##fileformat=VCFv4.1 ##FILTER= ##FILTER= ##FILTER= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4"> ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##GATKCommandLine= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4] filterName=[filter] genotypeFilterExpression=[] genotypeFilterName=[] clusterSize=3 clusterWindowSize=10 maskExtension=0 maskName=Mask filterNotInMask=false missingValuesInExpressionsShouldEvaluateAsFailing=false invalidatePreviousFilters=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false",Date="Tue Jan 14 23:34:55 PST 2014",Epoch=1389771295025,Version=2.8-1-g932cd3a> ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[/srv/gs1/projects/cherry/giltae/strains/hugeseq/L1528/chrI.recal.bam] read_buffer_size=null phone_home=STANDARD gatk_key=null read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/srv/gs1/projects/cherry/sacCer3/sacCer3.fa nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=CALCULATE_AS_NECESSARY baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 defaultBaseQualities=-1 validation_strictness=LENIENT remove_program_records=false keep_program_records=false unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT pcr_error_rate=1.0E-4 noSLOD=false annotateNDA=false min_base_quality_score=17 max_deletion_fraction=0.05 cap_max_alternate_alleles_for_indels=false min_indel_count_for_genotyping=5 min_indel_fraction_per_sample=0.25 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10 indelGapOpenPenalty=45 indelHaplotypeSize=80 noBandedIndel=false indelDebug=false ignoreSNPAlleles=false allReadsSP=false ignoreLaneInfo=false reference_sample_calls=(RodBinding name= source=UNBOUND) reference_sample_name=null sample_ploidy=2 min_quality_score=1 max_quality_score=40 site_quality_prior=20 min_power_threshold_for_calling=0.95 min_reference_depth=100 exclude_filtered_reference_sites=false heterozygosity=0.001 genotyping_mode=DISCOVERY output_mode=EMIT_VARIANTS_ONLY standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=10.0 alleles=(RodBinding name= source=UNBOUND) max_alternate_alleles=3 dbsnp=(RodBinding name=dbsnp source=/srv/gs1/projects/cherry/giltae/hugeseq_data/snp.d/chrI_SNPs.vcf) comp=[] out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub debug_file=null metrics_file=null annotation=[DepthOfCoverage, MappingQualityZero] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##reference=file:///srv/gs1/projects/cherry/sacCer3/sacCer3.fa #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT L1528 chrI 547 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.537;DP=13;Dels=0.00;FS=18.195;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.45;MQ0=1;MQRankSum=-1.396;QD=0.93;ReadPosRankSum=1.182;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,11:13:6:43,6,0 chrI 588 . C A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=13;Dels=0.00;FS=14.150;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.20;MQ0=0;MQRankSum=-0.691;QD=0.93;ReadPosRankSum=-1.480;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,11:13:6:43,6,0 chrI 594 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DP=4;Dels=0.00;FS=4.771;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=15.90;MQ0=0;MQRankSum=0.000;QD=3.01;ReadPosRankSum=1.026;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,2:4:6:43,6,0 chrI 595 . C G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DP=4;Dels=0.00;FS=4.771;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=15.90;MQ0=0;MQRankSum=1.026;QD=3.01;ReadPosRankSum=1.026;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,2:4:6:43,6,0 chrI 693 . T A 339 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=9.2162;MLEAC=2;MLEAF=1.00;MQ=23.50;MQ0=0;QD=11.30;SB=-4.401e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:45:372,45,0 chrI 701 . C A 341 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.88;MQ0=0;QD=10.66;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:45:374,45,0 chrI 703 . T A 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;DP=34;Dels=0.00;FS=27.313;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.44;MQ0=0;MQRankSum=1.804;QD=1.35;ReadPosRankSum=1.665;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,15:34:76:76,0,223 chrI 708 . A G 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;DP=34;Dels=0.00;FS=29.412;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.44;MQ0=0;MQRankSum=2.501;QD=1.82;ReadPosRankSum=1.570;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,16:34:92:92,0,200 chrI 709 . T C 168.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.950;DP=34;Dels=0.00;FS=29.412;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=23.44;MQ0=0;MQRankSum=-1.259;QD=4.94;ReadPosRankSum=-1.811;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:16,18:34:92:198,0,92 chrI 737 . C T 63.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.277;DP=28;Dels=0.00;FS=71.180;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=21.55;MQ0=0;MQRankSum=3.668;QD=2.25;ReadPosRankSum=-2.373;SB=-3.030e+00 GT:AD:DP:GQ:PL 0/1:10,18:28:22:93,0,22 chrI 738 . C G 125.39 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=21.22;MQ0=0;QD=4.64;SB=15.60 GT:AD:DP:GQ:PL 1/1:0,16:27:21:158,21,0 chrI 743 . A T 129.39 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.01;MQ0=0;QD=5.18;SB=15.60 GT:AD:DP:GQ:PL 1/1:0,15:25:21:162,21,0 chrI 772 . C T 54.51 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.98;MQ0=0;QD=4.96;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:87,12,0 chrI 773 . T C 54.51 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.98;MQ0=0;QD=4.96;SB=-4.255e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:87,12,0 chrI 801 . G A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=8.92;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:49,6,0 chrI 826 . T C 48.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.79;MQ0=0;QD=9.79;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:81,9,0 chrI 831 . C T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.79;MQ0=0;QD=5.16;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:57,6,0 chrI 848 . C T 73.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=12.25;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:106,12,0 chrI 870 . G A 89.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.262;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.17;MQ0=0;MQRankSum=1.377;QD=8.09;ReadPosRankSum=1.531;SB=-1.951e-02 GT:AD:DP:GQ:PL 0/1:3,8:11:22:119,0,22 chrI 871 . G T 98.40 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.66;MQ0=0;QD=8.20;SB=20.66 GT:AD:DP:GQ:PL 1/1:0,8:12:15:130,15,0 chrI 876 . T C 164.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=17;Dels=0.00;FS=12.304;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;MQRankSum=-1.123;QD=9.65;ReadPosRankSum=1.531;SB=-4.069e-02 GT:AD:DP:GQ:PL 1/1:1,16:17:24:197,24,0 chrI 878 . T C 219 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.717;DP=23;Dels=0.00;FS=32.482;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=25.89;MQ0=0;MQRankSum=-0.041;QD=9.52;ReadPosRankSum=2.961;SB=-1.513e-02 GT:AD:DP:GQ:PL 1/1:4,19:23:30:252,30,0 chrI 883 . G A 79.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.522;DP=38;Dels=0.00;FS=18.365;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=26.62;MQ0=0;MQRankSum=0.195;QD=2.08;ReadPosRankSum=2.920;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,9:38:99:109,0,253 chrI 884 . A G 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;DP=40;Dels=0.00;FS=18.365;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=26.74;MQ0=0;MQRankSum=1.009;QD=0.85;ReadPosRankSum=2.319;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,9:40:64:64,0,364 chrI 904 . G A 1010 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=0;QD=21.49;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1043,114,0 chrI 925 . T C 1029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=1;MQRankSum=0.693;QD=20.18;ReadPosRankSum=1.663;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1062,123,0 chrI 980 . A G 39.06 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.63;MQ0=0;QD=6.51;SB=10.91 GT:AD:DP:GQ:PL 1/1:0,4:6:9:71,9,0 chrI 981 . A C 39.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=6.990;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;MQRankSum=0.731;QD=7.99;ReadPosRankSum=0.731;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,4:5:9:72,9,0 chrI 1053 . C G 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;DP=19;Dels=0.00;FS=6.726;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.59;MQ0=3;MQRankSum=0.741;QD=0.60;ReadPosRankSum=2.540;SB=-6.884e-03 GT:AD:DP:GQ:PL 0/1:12,7:19:37:41,0,37 chrI 1087 . C T 407.42 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.928;DP=35;Dels=0.00;FS=87.391;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.33;MQ0=1;MQRankSum=3.874;QD=11.64;ReadPosRankSum=-0.955;SB=-3.430e+00 GT:AD:DP:GQ:PL 0/1:13,22:35:7:437,0,7 chrI 1096 . C T 419.11 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;DP=37;Dels=0.00;FS=90.975;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.54;MQ0=1;MQRankSum=3.507;QD=11.33;ReadPosRankSum=3.171;SB=-3.124e+00 GT:AD:DP:GQ:PL 0/1:13,24:37:13:449,0,13 chrI 1101 . G A 540 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=1;QD=15.43;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:66:573,66,0 chrI 1103 . A C 395.18 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.909;DP=35;Dels=0.00;FS=81.177;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.86;MQ0=1;MQRankSum=2.778;QD=11.29;ReadPosRankSum=4.328;SB=-3.186e+00 GT:AD:DP:GQ:PL 0/1:11,24:35:11:425,0,11 chrI 1104 . C T 406.14 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;DP=35;Dels=0.00;FS=81.177;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=25.86;MQ0=1;MQRankSum=2.929;QD=11.60;ReadPosRankSum=4.328;SB=-3.152e+00 GT:AD:DP:GQ:PL 0/1:11,24:35:12:436,0,12 chrI 1126 . T A 501 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=1;QD=15.18;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:60:534,60,0 chrI 1133 . G T 497 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=15.53;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:60:530,60,0 chrI 1141 . A G 126.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;MQRankSum=-1.596;QD=3.94;ReadPosRankSum=2.297;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:2,30:32:18:159,18,0 chrI 1164 . T C 148.06 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=8.71;SB=-7.483e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:21:181,21,0 chrI 1263 . C T 279 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.84;MQ0=10;QD=7.54;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:36:312,36,0 chrI 1269 . G A 281 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.003;DP=50;Dels=0.00;FS=4.337;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=16.52;MQ0=10;MQRankSum=1.185;QD=5.62;ReadPosRankSum=1.185;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:2,47:50:36:314,36,0 chrI 1334 . C T 232 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=16.47;MQ0=4;QD=3.93;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:33:265,33,0 chrI 1358 . T C 81.26 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.98;MQ0=0;QD=1.93;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,42:42:15:114,15,0 chrI 1364 . T C 58.51 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.17;MQ0=0;QD=1.95;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:12:91,12,0 chrI 1377 . G A 54.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrI 1483 . C A 419 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.54;MQ0=4;QD=9.11;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:57:452,57,0 chrI 1491 . C T 432 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.612;DP=47;Dels=0.00;FS=5.037;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.47;MQ0=4;MQRankSum=1.776;QD=9.19;ReadPosRankSum=2.164;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:12,35:47:57:465,57,0 chrI 1506 . T G 432 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.65;MQ0=1;QD=8.00;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:57:465,57,0 chrI 1518 . T C 434 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=21.06;MQ0=0;QD=7.36;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:57:467,57,0 chrI 1707 . A G 317.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.854;DP=22;Dels=0.00;FS=5.898;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=1;MQRankSum=-0.352;QD=14.41;ReadPosRankSum=-0.955;SB=-1.981e+02 GT:AD:DP:GQ:PL 1/1:3,19:22:22:350,22,0 chrI 1747 . T C 118.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;DP=14;Dels=0.00;FS=2.932;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=33.64;MQ0=0;MQRankSum=-0.370;QD=8.49;ReadPosRankSum=0.185;SB=-4.479e+01 GT:AD:DP:GQ:PL 0/1:3,9:14:4:148,0,4 chrI 1757 . G A 64.51 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.44;MQ0=0;QD=16.13;SB=-2.155e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:12:97,12,0 chrI 1761 . A C 65.51 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.44;MQ0=0;QD=16.38;SB=-2.155e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:12:98,12,0 chrI 1846 . A C 183.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.8075;MLEAC=1;MLEAF=0.500;MQ=19.20;MQ0=19;MQRankSum=-0.973;QD=1.71;ReadPosRankSum=-0.147;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:41,66:107:99:213,0,502 chrI 1847 . C T 152.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.236;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.8075;MLEAC=1;MLEAF=0.500;MQ=19.16;MQ0=20;MQRankSum=-1.456;QD=1.37;ReadPosRankSum=-0.285;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:42,69:111:99:182,0,496 chrI 1855 . G A 308.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.2578;MLEAC=1;MLEAF=0.500;MQ=24.18;MQ0=25;MQRankSum=-0.601;QD=2.00;ReadPosRankSum=-0.516;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:48,99:154:99:338,0,474 chrI 1871 . C G 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;DP=282;Dels=0.00;FS=3.098;HaplotypeScore=22.8717;MLEAC=1;MLEAF=0.500;MQ=32.13;MQ0=25;MQRankSum=-9.765;QD=0.27;ReadPosRankSum=5.103;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/1:177,102:282:99:107,0,2404 chrI 2029 . T C 520 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=20.71;MQ0=12;MQRankSum=0.686;QD=10.40;ReadPosRankSum=2.125;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:2,48:50:63:553,63,0 chrI 2146 . G A 4754.01 filter AC=2;AF=1.00;AN=2;DP=401;Dels=0.00;FS=0.000;HaplotypeScore=32.1691;MLEAC=2;MLEAF=1.00;MQ=29.49;MQ0=42;QD=11.86;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:12,389:401:99:4754,537,0 chrI 2216 . G A 459.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;DP=103;Dels=0.00;FS=6.755;HaplotypeScore=29.7076;MLEAC=1;MLEAF=0.500;MQ=27.16;MQ0=10;MQRankSum=-4.729;QD=4.46;ReadPosRankSum=-4.596;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:38,65:103:99:489,0,626 chrI 2223 . T A 659.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.995;DP=90;Dels=0.00;FS=19.643;HaplotypeScore=27.1137;MLEAC=1;MLEAF=0.500;MQ=27.65;MQ0=9;MQRankSum=4.611;QD=7.32;ReadPosRankSum=3.658;SB=-9.601e+01 GT:AD:DP:GQ:PL 0/1:50,40:90:99:689,0,272 chrI 2225 . A C 585.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.528;DP=88;Dels=0.00;FS=3.900;HaplotypeScore=27.1137;MLEAC=1;MLEAF=0.500;MQ=27.79;MQ0=8;MQRankSum=4.912;QD=6.65;ReadPosRankSum=4.072;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:51,37:88:99:615,0,238 chrI 2243 . C G 503.12 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.234;DP=43;Dels=0.00;FS=5.461;HaplotypeScore=11.2795;MLEAC=2;MLEAF=1.00;MQ=29.86;MQ0=1;MQRankSum=3.379;QD=11.70;ReadPosRankSum=4.534;SB=-4.412e+01 GT:AD:DP:GQ:PL 1/1:14,27:43:5:534,5,0 chrI 2275 . T G 76.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;DP=34;Dels=0.00;FS=52.899;HaplotypeScore=3.7608;MLEAC=1;MLEAF=0.500;MQ=25.68;MQ0=0;MQRankSum=-0.055;QD=2.24;ReadPosRankSum=1.345;SB=-6.498e-03 GT:AD:DP:GQ:PL 0/1:20,13:34:99:106,0,331 chrI 2278 . C T 73.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;DP=33;Dels=0.00;FS=60.101;HaplotypeScore=2.9721;MLEAC=1;MLEAF=0.500;MQ=25.26;MQ0=0;MQRankSum=-0.565;QD=2.21;ReadPosRankSum=-1.111;SB=7.160e-03 GT:AD:DP:GQ:PL 0/1:19,14:33:99:103,0,311 chrI 2283 . G C 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;DP=29;Dels=0.00;FS=48.453;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.23;MQ0=0;MQRankSum=-0.344;QD=0.79;ReadPosRankSum=-3.464;SB=3.421e-04 GT:AD:DP:GQ:PL 0/1:19,10:29:53:53,0,317 chrI 2284 . G T 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;DP=29;Dels=0.00;FS=48.453;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.23;MQ0=0;MQRankSum=0.574;QD=0.66;ReadPosRankSum=-3.464;SB=-4.795e-03 GT:AD:DP:GQ:PL 0/1:19,10:29:49:49,0,320 chrI 2287 . T C 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DP=29;Dels=0.00;FS=48.453;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.23;MQ0=0;MQRankSum=0.711;QD=0.76;ReadPosRankSum=-3.923;SB=-1.068e-03 GT:AD:DP:GQ:PL 0/1:19,10:29:52:52,0,274 chrI 2288 . G A 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;DP=29;Dels=0.00;FS=48.453;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.23;MQ0=0;MQRankSum=0.619;QD=0.93;ReadPosRankSum=-3.923;SB=-3.079e-03 GT:AD:DP:GQ:PL 0/1:19,10:29:57:57,0,309 chrI 2290 . T C 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.675;DP=29;Dels=0.00;FS=48.453;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=25.23;MQ0=0;MQRankSum=-0.436;QD=0.62;ReadPosRankSum=-3.923;SB=4.350e-03 GT:AD:DP:GQ:PL 0/1:19,10:29:48:48,0,323 chrI 2291 . G A 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;DP=29;Dels=0.00;FS=48.453;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=25.23;MQ0=0;MQRankSum=-0.161;QD=0.86;ReadPosRankSum=-3.923;SB=-4.348e-03 GT:AD:DP:GQ:PL 0/1:19,10:29:55:55,0,311 chrI 2295 . T C 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;DP=29;Dels=0.00;FS=48.453;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=25.23;MQ0=0;MQRankSum=0.206;QD=0.86;ReadPosRankSum=-3.923;SB=-3.786e-03 GT:AD:DP:GQ:PL 0/1:19,10:29:55:55,0,316 chrI 2331 . A C 365 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.9513;MLEAC=2;MLEAF=1.00;MQ=25.46;MQ0=0;QD=12.17;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:45:398,45,0 chrI 2340 . T C 332 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=1;QD=10.37;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:42:365,42,0 chrI 2442 . A C 17.16 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.26;MQ0=0;MQRankSum=1.231;QD=3.43;ReadPosRankSum=-0.358;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:3,2:5:15:47,0,15 chrI 2446 . C G 13.28 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=0;MQRankSum=1.537;QD=2.21;ReadPosRankSum=-0.988;SB=0.060 GT:AD:DP:GQ:PL 0/1:3,3:6:15:43,0,15 chrI 2449 . T C 13.28 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=0;MQRankSum=1.537;QD=2.21;ReadPosRankSum=-0.988;SB=0.060 GT:AD:DP:GQ:PL 0/1:3,3:6:15:43,0,15 chrI 2451 . A T 17.16 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=0;MQRankSum=1.537;QD=2.86;ReadPosRankSum=-0.406;SB=0.060 GT:AD:DP:GQ:PL 0/1:3,3:6:15:47,0,15 chrI 2455 . G C 14.24 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.10;MQ0=0;MQRankSum=1.754;QD=2.03;ReadPosRankSum=-0.937;SB=0.190 GT:AD:DP:GQ:PL 0/1:3,4:7:15:44,0,15 chrI 2477 . G A 143.77 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.113;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.99;MQ0=0;MQRankSum=2.451;QD=11.06;ReadPosRankSum=-1.099;SB=-3.802e+00 GT:AD:DP:GQ:PL 0/1:3,10:13:0:172,0,0 chrI 2478 . G C 136.77 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.99;MQ0=0;MQRankSum=2.451;QD=10.52;ReadPosRankSum=-1.099;SB=-3.802e+00 GT:AD:DP:GQ:PL 0/1:3,10:13:0:165,0,0 chrI 2480 . A G 137.77 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.99;MQ0=0;MQRankSum=2.451;QD=10.60;ReadPosRankSum=-0.423;SB=-3.802e+00 GT:AD:DP:GQ:PL 0/1:3,10:13:0:166,0,0 chrI 2488 . T A 161.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.369;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.86;MQ0=0;MQRankSum=2.100;QD=11.50;ReadPosRankSum=-0.456;SB=-7.279e-02 GT:AD:DP:GQ:PL 1/1:2,12:14:21:194,21,0 chrI 2500 . G A 136.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.764;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=0;MQRankSum=1.783;QD=9.08;ReadPosRankSum=1.444;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:2,13:15:18:169,18,0 chrI 2501 . A G 127.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.085;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=0;MQRankSum=1.783;QD=8.48;ReadPosRankSum=1.444;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:2,13:15:18:160,18,0 chrI 2524 . T C 122.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.04;MQ0=0;QD=8.72;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:155,18,0 chrI 2531 . G T 105.26 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.04;MQ0=0;QD=7.52;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:138,15,0 chrI 2534 . A G 107.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.80;MQ0=0;MQRankSum=-1.203;QD=8.25;ReadPosRankSum=1.470;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:1,12:13:15:140,15,0 chrI 2535 . C A 105.26 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.51;MQ0=0;QD=8.77;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:138,15,0 chrI 2542 . T G 99.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=12;Dels=0.00;FS=10.792;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.60;MQ0=0;MQRankSum=0.579;QD=8.27;ReadPosRankSum=1.448;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:1,11:12:15:132,15,0 chrI 12396 . T C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=7.52;MQ0=31;QD=0.57;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,42:42:6:55,6,0 chrI 12594 . A T 115.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.733;DP=21;Dels=0.00;FS=3.214;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=3;MQRankSum=-0.222;QD=5.48;ReadPosRankSum=-2.177;SB=2.87 GT:AD:DP:GQ:PL 1/1:11,10:21:18:148,18,0 chrI 12600 . A T 86.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.433;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.50;MQ0=3;MQRankSum=-0.625;QD=4.31;ReadPosRankSum=-1.395;SB=2.74 GT:AD:DP:GQ:PL 1/1:10,10:20:15:119,15,0 chrI 12619 . G A 103.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.027;DP=30;Dels=0.00;FS=1.983;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.57;MQ0=3;MQRankSum=-1.513;QD=3.44;ReadPosRankSum=0.664;SB=2.87 GT:AD:DP:GQ:PL 1/1:9,21:30:18:136,18,0 chrI 12620 . T C 109.13 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.57;MQ0=3;QD=3.64;SB=-1.415e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:18:142,18,0 chrI 12648 . A G 245.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.429;DP=87;Dels=0.00;FS=7.486;HaplotypeScore=34.1699;MLEAC=1;MLEAF=0.500;MQ=23.74;MQ0=0;MQRankSum=-0.154;QD=2.82;ReadPosRankSum=1.261;SB=3.23 GT:AD:DP:GQ:PL 0/1:8,60:87:10:275,0,10 chrI 12666 . T C 93.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.428;DP=104;Dels=0.00;FS=17.451;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=23.83;MQ0=0;MQRankSum=2.290;QD=0.89;ReadPosRankSum=-2.290;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,13:104:99:123,0,304 chrI 12667 . G A 255.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.469;DP=104;Dels=0.00;FS=4.627;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=23.83;MQ0=0;MQRankSum=-0.759;QD=2.45;ReadPosRankSum=2.119;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:15,89:104:99:285,0,118 chrI 12668 . T C 486 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=0;MQRankSum=0.313;QD=4.58;ReadPosRankSum=2.403;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:2,104:106:60:519,60,0 chrI 12690 . A T 113.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;DP=110;Dels=0.00;FS=0.963;HaplotypeScore=7.8292;MLEAC=1;MLEAF=0.500;MQ=23.67;MQ0=0;MQRankSum=0.700;QD=1.03;ReadPosRankSum=-2.740;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:84,26:110:99:143,0,326 chrI 12695 . T C 290.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254;DP=108;Dels=0.00;FS=3.082;HaplotypeScore=14.6443;MLEAC=1;MLEAF=0.500;MQ=24.18;MQ0=0;MQRankSum=0.282;QD=2.69;ReadPosRankSum=5.783;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,73:108:99:320,0,182 chrI 12696 . A T 93.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;DP=108;Dels=0.00;FS=4.514;HaplotypeScore=14.6443;MLEAC=1;MLEAF=0.500;MQ=24.18;MQ0=0;MQRankSum=0.914;QD=0.86;ReadPosRankSum=-4.696;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:73,16:108:99:123,0,322 chrI 12697 . A G 292.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.893;DP=108;Dels=0.00;FS=3.082;HaplotypeScore=14.6443;MLEAC=1;MLEAF=0.500;MQ=24.18;MQ0=0;MQRankSum=0.538;QD=2.70;ReadPosRankSum=5.652;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,73:108:99:322,0,179 chrI 12705 . A G 323.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=16.5600;MLEAC=1;MLEAF=0.500;MQ=24.57;MQ0=0;MQRankSum=0.454;QD=2.14;ReadPosRankSum=6.332;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,81:151:99:353,0,415 chrI 12714 . T C 289.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;DP=193;Dels=0.00;FS=1.355;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=26.67;MQ0=0;MQRankSum=0.105;QD=1.50;ReadPosRankSum=6.554;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,87:193:99:319,0,622 chrI 12715 . G A 624.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;DP=198;Dels=0.00;FS=0.636;HaplotypeScore=5.0704;MLEAC=1;MLEAF=0.500;MQ=27.21;MQ0=0;MQRankSum=1.837;QD=3.15;ReadPosRankSum=-5.584;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:88,106:198:99:654,0,320 chrI 12738 . T A 234.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;DP=169;Dels=0.00;FS=37.503;HaplotypeScore=9.8231;MLEAC=1;MLEAF=0.500;MQ=28.63;MQ0=0;MQRankSum=0.331;QD=1.38;ReadPosRankSum=-3.047;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,69:169:99:264,0,977 chrI 12743 . T C 117.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;DP=151;Dels=0.00;FS=36.638;HaplotypeScore=7.1902;MLEAC=1;MLEAF=0.500;MQ=29.24;MQ0=0;MQRankSum=0.662;QD=0.77;ReadPosRankSum=0.996;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,49:151:99:147,0,982 chrI 12744 . A G 769.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.609;DP=151;Dels=0.00;FS=34.606;HaplotypeScore=8.1061;MLEAC=1;MLEAF=0.500;MQ=29.24;MQ0=0;MQRankSum=0.194;QD=5.09;ReadPosRankSum=-1.278;SB=-1.170e+02 GT:AD:DP:GQ:PL 0/1:50,95:151:99:799,0,161 chrI 12745 . A G 121.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.085;DP=152;Dels=0.00;FS=45.064;HaplotypeScore=8.1061;MLEAC=1;MLEAF=0.500;MQ=29.17;MQ0=0;MQRankSum=1.242;QD=0.80;ReadPosRankSum=1.537;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:103,49:152:99:151,0,999 chrI 12753 . A G 147.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.478;DP=150;Dels=0.00;FS=42.267;HaplotypeScore=7.3174;MLEAC=1;MLEAF=0.500;MQ=29.32;MQ0=0;MQRankSum=1.667;QD=0.98;ReadPosRankSum=2.977;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,49:150:99:177,0,992 chrI 12762 . T C 179.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;DP=147;Dels=0.00;FS=35.284;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=29.16;MQ0=0;MQRankSum=1.971;QD=1.22;ReadPosRankSum=-0.148;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:95,52:147:99:209,0,854 chrI 12763 . G A 781.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.702;DP=146;Dels=0.00;FS=35.608;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=29.23;MQ0=0;MQRankSum=-0.599;QD=5.35;ReadPosRankSum=0.411;SB=-1.030e+02 GT:AD:DP:GQ:PL 0/1:52,94:146:99:811,0,202 chrI 12764 . T C 1295 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;QD=8.87;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1328,156,0 chrI 12786 . T A 1331 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.364;DP=147;Dels=0.00;FS=2.472;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=6;MQRankSum=1.850;QD=9.05;ReadPosRankSum=2.950;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:3,144:147:99:1364,155,0 chrI 12809 . T C 321.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;DP=86;Dels=0.00;FS=69.669;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=24.56;MQ0=8;MQRankSum=-1.413;QD=3.73;ReadPosRankSum=4.741;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:34,51:86:99:351,0,117 chrI 12810 . T C 549 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.98;MQ0=8;QD=7.04;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:69:582,69,0 chrI 12814 . G C 694 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.10;MQ0=8;QD=9.01;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:84:727,84,0 chrI 12821 . T C 762 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=67;Dels=0.00;FS=14.698;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.80;MQ0=8;MQRankSum=-0.910;QD=11.37;ReadPosRankSum=1.674;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,66:67:93:795,93,0 chrI 12964 . A G 939 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.190;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=6;MQRankSum=-1.357;QD=10.55;ReadPosRankSum=1.690;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:972,108,0 chrI 13011 . A T 37.11 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.63;MQ0=0;MQRankSum=2.285;QD=2.65;ReadPosRankSum=-0.471;SB=1.34 GT:AD:DP:GQ:PL 0/1:6,8:14:13:67,0,13 chrI 13013 . G A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=0;QD=1.63;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:54,6,0 chrI 13025 . A C 460 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=11.50;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:57:493,57,0 chrI 13028 . A G 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.024;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.74;MQ0=0;MQRankSum=0.161;QD=1.26;ReadPosRankSum=-2.049;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,17:43:84:84,0,225 chrI 13036 . A G 161.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.9827;MLEAC=1;MLEAF=0.500;MQ=27.87;MQ0=0;MQRankSum=1.024;QD=3.35;ReadPosRankSum=-2.369;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,22:48:99:191,0,252 chrI 13042 . G A 214.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.9381;MLEAC=1;MLEAF=0.500;MQ=28.44;MQ0=0;MQRankSum=2.270;QD=4.46;ReadPosRankSum=-4.169;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,25:48:99:244,0,265 chrI 13073 . A G 51.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.9547;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=3;MQRankSum=0.921;QD=0.82;ReadPosRankSum=-3.224;SB=-4.197e+01 GT:AD:DP:GQ:PL 1/1:54,9:63:9:84,9,0 chrI 13081 . A G 1065 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.9748;MLEAC=2;MLEAF=1.00;MQ=27.30;MQ0=7;QD=15.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1098,126,0 chrI 13099 . T A 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.377;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.9359;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=8;MQRankSum=-0.264;QD=0.25;ReadPosRankSum=-3.572;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,12:65:46:46,0,740 chrI 13122 . G A 473 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.93;MQ0=8;QD=13.51;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:57:506,57,0 chrI 24491 . T C 330 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=25.72;MQ0=5;QD=8.05;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,40:41:42:363,42,0 chrI 24514 . C T 480 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.4839;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=2;QD=11.71;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:57:513,57,0 chrI 24603 . A G 202.01 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.25;MQ0=7;QD=8.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:27:235,27,0 chrI 24659 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.61;MQ0=15;QD=1.27;SB=-2.676e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:6:54,6,0 chrI 24814 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.26;MQ0=58;QD=0.24;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,90:91:6:53,6,0 chrI 24826 . G A 235 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.2599;MLEAC=2;MLEAF=1.00;MQ=15.83;MQ0=46;QD=2.47;SB=-1.109e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:30:268,30,0 chrI 24861 . A G 612 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.25;MQ0=44;QD=8.38;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:75:645,75,0 chrI 24937 . A G 1239 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.542;DP=156;Dels=0.00;FS=84.918;HaplotypeScore=5.8866;MLEAC=2;MLEAF=1.00;MQ=22.14;MQ0=5;MQRankSum=4.081;QD=7.94;ReadPosRankSum=7.228;SB=3.00 GT:AD:DP:GQ:PL 1/1:64,92:156:99:1272,147,0 chrI 24956 . T C 1114 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.208;DP=152;Dels=0.00;FS=39.690;HaplotypeScore=21.0393;MLEAC=2;MLEAF=1.00;MQ=22.32;MQ0=7;MQRankSum=0.723;QD=7.33;ReadPosRankSum=2.741;SB=3.00 GT:AD:DP:GQ:PL 1/1:31,119:152:99:1147,132,0 chrI 24958 . A G 1106 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.239;DP=149;Dels=0.00;FS=32.320;HaplotypeScore=19.4619;MLEAC=2;MLEAF=1.00;MQ=22.25;MQ0=7;MQRankSum=-0.227;QD=7.42;ReadPosRankSum=2.361;SB=3.00 GT:AD:DP:GQ:PL 1/1:33,116:149:99:1139,132,0 chrI 24966 . A G 1063 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.311;DP=151;Dels=0.00;FS=30.198;HaplotypeScore=20.6892;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=12;MQRankSum=-1.189;QD=7.04;ReadPosRankSum=0.867;SB=3.00 GT:AD:DP:GQ:PL 1/1:31,119:151:99:1096,126,0 chrI 24975 . T C 900 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.231;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=17.0034;MLEAC=2;MLEAF=1.00;MQ=21.74;MQ0=12;MQRankSum=-1.721;QD=6.38;ReadPosRankSum=-3.231;SB=-2.400e+01 GT:AD:DP:GQ:PL 1/1:20,121:141:99:933,108,0 chrI 24999 . T A 339.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;DP=108;Dels=0.00;FS=15.286;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=21.80;MQ0=12;MQRankSum=4.827;QD=3.14;ReadPosRankSum=-3.681;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,45:108:99:369,0,144 chrI 25054 . G A 138.13 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=18.09;MQ0=6;QD=4.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:18:171,18,0 chrI 25070 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=0;QD=3.47;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:6:6:52,6,0 chrI 25071 . C A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.95;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:51,6,0 chrI 25178 . G A 97.26 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.06;MQ0=0;QD=4.05;SB=-8.127e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:15:130,15,0 chrI 25190 . A C 120.13 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.05;MQ0=0;QD=3.53;SB=-1.591e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:18:153,18,0 chrI 25208 . G A 59.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=7.7563;MLEAC=1;MLEAF=0.500;MQ=26.81;MQ0=0;MQRankSum=0.875;QD=1.69;ReadPosRankSum=1.634;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:18,17:35:31:89,0,31 chrI 25216 . G A 64.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.308;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=10.6363;MLEAC=1;MLEAF=0.500;MQ=26.99;MQ0=0;MQRankSum=1.428;QD=1.94;ReadPosRankSum=0.054;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:18,15:33:29:94,0,29 chrI 25222 . A G 61.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.222;DP=33;Dels=0.03;FS=0.000;HaplotypeScore=16.5932;MLEAC=1;MLEAF=0.500;MQ=26.99;MQ0=0;MQRankSum=1.842;QD=1.85;ReadPosRankSum=-2.564;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:18,14:32:31:91,0,31 chrI 25223 . G A 62.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.222;DP=33;Dels=0.03;FS=0.000;HaplotypeScore=17.5879;MLEAC=1;MLEAF=0.500;MQ=26.99;MQ0=0;MQRankSum=0.952;QD=1.88;ReadPosRankSum=-2.936;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:21,11:32:32:92,0,32 chrI 25231 . G A 67.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.979;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=22.6719;MLEAC=1;MLEAF=0.500;MQ=26.85;MQ0=0;MQRankSum=0.951;QD=2.16;ReadPosRankSum=-2.979;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:21,10:31:29:97,0,29 chrI 25238 . A G 73.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.415;DP=27;Dels=0.00;FS=1.983;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.81;MQ0=0;MQRankSum=0.360;QD=2.72;ReadPosRankSum=-2.407;SB=-3.551e+01 GT:AD:DP:GQ:PL 1/1:20,7:27:12:106,12,0 chrI 25246 . A G 90.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.174;DP=34;Dels=0.00;FS=7.132;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=1;MQRankSum=-0.727;QD=2.65;ReadPosRankSum=1.621;SB=-1.303e+02 GT:AD:DP:GQ:PL 1/1:1,31:34:15:123,15,0 chrI 25340 . C A 366 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.80;MQ0=1;QD=11.44;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:51:399,51,0 chrI 25351 . A G 510 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=1;QD=13.08;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:66:543,66,0 chrI 25374 . A T 635 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=1;QD=16.28;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:81:668,81,0 chrI 25418 . T C 445 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=6.6478;MLEAC=2;MLEAF=1.00;MQ=24.66;MQ0=1;QD=11.41;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,37:39:57:478,57,0 chrI 26796 . A G 36.97 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=0;QD=1.76;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:69,9,0 chrI 26811 . T G 36.97 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=0;QD=1.76;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:69,9,0 chrI 26819 . A T 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=0;QD=1.86;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:71,9,0 chrI 26823 . G T 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=0;QD=1.81;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:70,9,0 chrI 26826 . A G 35.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=0;QD=1.71;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:68,9,0 chrI 26829 . A T 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=0;QD=1.86;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:71,9,0 chrI 26835 . G T 36.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=1.85;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:9:69,9,0 chrI 26838 . A G 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=0;QD=1.81;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,20:21:9:70,9,0 chrI 26846 . T C 57.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=2.88;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:90,12,0 chrI 26847 . G A 58.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=2.93;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:91,12,0 chrI 26848 . T G 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=3.08;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:94,12,0 chrI 26855 . G C 29.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.07;MQ0=0;MQRankSum=0.401;QD=2.25;ReadPosRankSum=-1.737;SB=-3.059e+00 GT:AD:DP:GQ:PL 0/1:1,12:13:10:59,0,10 chrI 26856 . C T 28.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.369;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=0;MQRankSum=0.639;QD=2.02;ReadPosRankSum=-0.091;SB=-3.059e+00 GT:AD:DP:GQ:PL 0/1:2,12:14:10:58,0,10 chrI 26859 . A G 29.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.552;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=0;MQRankSum=0.822;QD=2.09;ReadPosRankSum=-0.091;SB=-3.059e+00 GT:AD:DP:GQ:PL 0/1:2,12:14:10:59,0,10 chrI 26862 . T C 26.23 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.90;MQ0=0;MQRankSum=1.371;QD=1.75;ReadPosRankSum=0.505;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:3,12:15:10:56,0,10 chrI 26878 . G C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=2.41;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrI 26880 . G T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=2.41;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrI 26896 . C T 112.03 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.374;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=0;MQRankSum=2.297;QD=5.33;ReadPosRankSum=-2.374;SB=-3.376e-02 GT:AD:DP:GQ:PL 0/1:6,15:21:19:142,0,19 chrI 26900 . T C 102.03 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.518;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=0;MQRankSum=2.764;QD=4.86;ReadPosRankSum=-2.374;SB=-3.377e-02 GT:AD:DP:GQ:PL 0/1:6,15:21:19:132,0,19 chrI 26901 . T A 127.75 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=0;QD=6.08;SB=18.24 GT:AD:DP:GQ:PL 1/1:0,15:21:18:160,18,0 chrI 26923 . C G 145.06 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;QD=6.31;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:21:178,21,0 chrI 26931 . A G 164.03 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;QD=6.31;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:24:197,24,0 chrI 26940 . A G 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.56;MQ0=0;MQRankSum=-0.586;QD=1.18;ReadPosRankSum=-4.857;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,17:34:70:70,0,129 chrI 26945 . C T 94.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.999;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.84;MQ0=0;MQRankSum=0.231;QD=2.24;ReadPosRankSum=5.048;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:25,17:42:70:124,0,70 chrI 26946 . T A,G 92.02 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.87;MQ0=0;MQRankSum=0.846;QD=2.14;ReadPosRankSum=1.652;SB=-1.880e-02 GT:AD:DP:GQ:PL 1/2:1,17,25:43:53:152,87,78,65,0,53 chrI 26949 . G A 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.258;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=28.01;MQ0=0;MQRankSum=0.746;QD=0.94;ReadPosRankSum=4.904;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:32,17:49:66:76,0,66 chrI 26954 . A T 356 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=7.57;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:42:389,42,0 chrI 26955 . T C 50.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=28.31;MQ0=0;MQRankSum=1.660;QD=0.89;ReadPosRankSum=3.364;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,16:56:80:80,0,178 chrI 26958 . G A,T 264.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.83;MQ0=0;QD=4.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:0,16,40:56:99:324,168,150,157,0,136 chrI 26961 . A G 164.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.84;MQ0=0;MQRankSum=0.844;QD=2.73;ReadPosRankSum=0.276;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,44:60:99:194,0,106 chrI 26964 . A C,T 297.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.85;MQ0=0;QD=4.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:0,15,47:62:99:357,212,194,145,0,115 chrI 26970 . G T 201.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.223;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=0;MQRankSum=-0.206;QD=2.79;ReadPosRankSum=4.219;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,58:72:99:231,0,113 chrI 26973 . A G 394 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=5.47;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:51:427,51,0 chrI 26981 . T C 259 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=3.98;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,65:65:33:292,33,0 chrI 26982 . G A 258 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=3.97;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,65:65:33:291,33,0 chrI 26983 . T G 258 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;MQRankSum=1.344;QD=3.79;ReadPosRankSum=2.897;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:3,65:68:33:291,33,0 chrI 26990 . G C 389 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=4.63;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:48:422,48,0 chrI 26991 . C T 385 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=4.58;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:48:418,48,0 chrI 26994 . A G 377 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=4.05;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:48:410,48,0 chrI 26997 . T C 359 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.295;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;MQRankSum=0.171;QD=3.66;ReadPosRankSum=3.367;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:4,94:98:48:392,48,0 chrI 27027 . A T 907 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;MQRankSum=1.689;QD=5.70;ReadPosRankSum=0.294;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:940,105,0 chrI 27031 . C T 996 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.103;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.7971;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;MQRankSum=-0.170;QD=6.07;ReadPosRankSum=4.324;SB=3.00 GT:AD:DP:GQ:PL 1/1:23,141:164:99:1029,111,0 chrI 27035 . T C 868 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.255;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;MQRankSum=1.015;QD=5.53;ReadPosRankSum=4.210;SB=3.00 GT:AD:DP:GQ:PL 1/1:25,132:157:65:901,65,0 chrI 27036 . G A 896 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.936;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;MQRankSum=0.367;QD=5.71;ReadPosRankSum=3.797;SB=3.00 GT:AD:DP:GQ:PL 1/1:25,132:157:62:929,62,0 chrI 27044 . C T 856 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=4.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,182:182:96:889,96,0 chrI 27060 . A C,T 1051.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.71;MQ0=0;QD=5.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:0,53,146:199:99:1111,826,790,285,0,180 chrI 27062 . C A 160.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.930;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=0;MQRankSum=1.639;QD=0.80;ReadPosRankSum=0.068;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:146,53:199:99:190,0,766 chrI 27063 . G A 1189 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=6.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:1222,138,0 chrI 27072 . A G 698.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.439;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.78;MQ0=0;MQRankSum=0.763;QD=3.42;ReadPosRankSum=0.475;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,137:204:99:728,0,177 chrI 27075 . G A 666.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.281;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.78;MQ0=0;MQRankSum=1.486;QD=3.35;ReadPosRankSum=0.827;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,132:199:99:696,0,179 chrI 27080 . C T 678.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.964;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=0;MQRankSum=0.526;QD=3.61;ReadPosRankSum=1.762;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,120:188:99:708,0,183 chrI 27081 . G A 578.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=0;MQRankSum=-0.462;QD=3.07;ReadPosRankSum=1.552;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,120:188:99:608,0,181 chrI 27084 . G A 547.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=0;MQRankSum=-0.573;QD=2.83;ReadPosRankSum=0.514;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,125:193:99:577,0,148 chrI 27090 . T C 548.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.386;DP=193;Dels=0.00;FS=2.565;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.52;MQ0=0;MQRankSum=1.539;QD=2.84;ReadPosRankSum=0.015;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:69,124:193:99:578,0,176 chrI 27093 . A T 147.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;DP=195;Dels=0.00;FS=10.192;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=28.43;MQ0=0;MQRankSum=-0.210;QD=0.75;ReadPosRankSum=0.782;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,67:195:99:177,0,719 chrI 27096 . A G 136.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;DP=190;Dels=0.00;FS=17.794;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=28.26;MQ0=0;MQRankSum=1.129;QD=0.72;ReadPosRankSum=1.193;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,65:190:99:166,0,722 chrI 27099 . T C 655.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;DP=187;Dels=0.00;FS=28.671;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=27.93;MQ0=0;MQRankSum=-2.602;QD=3.50;ReadPosRankSum=-0.233;SB=-3.250e+02 GT:AD:DP:GQ:PL 0/1:66,121:187:99:685,0,186 chrI 27105 . A G,T 1019.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.6954;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.83;MQ0=0;QD=5.66;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/2:0,125,55:180:99:1079,264,150,815,0,782 chrI 27114 . A G 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.481;DP=178;Dels=0.00;FS=51.082;HaplotypeScore=3.9502;MLEAC=1;MLEAF=0.500;MQ=28.01;MQ0=0;MQRankSum=2.345;QD=0.28;ReadPosRankSum=0.289;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,43:178:79:79,0,1088 chrI 27126 . T C 1496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.789;DP=167;Dels=0.00;FS=78.408;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=0;MQRankSum=-0.667;QD=8.96;ReadPosRankSum=2.115;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:27,140:167:70:1529,70,0 chrI 27129 . C G 1753 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=10.56;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:1786,213,0 chrI 27210 . A G 5696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=285;Dels=0.00;FS=2.959;HaplotypeScore=22.8216;MLEAC=2;MLEAF=1.00;MQ=34.81;MQ0=0;MQRankSum=0.603;QD=19.99;ReadPosRankSum=2.432;SB=-2.705e+03 GT:AD:DP:GQ:PL 1/1:2,281:285:99:5696,651,0 chrI 27290 . C A 4368.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=19.0772;MLEAC=2;MLEAF=1.00;MQ=29.24;MQ0=0;QD=18.67;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:4368,477,0 chrI 27356 . T C 2416 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=0;QD=21.01;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2449,299,0 chrI 27357 . A G 2365 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=19.71;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2398,296,0 chrI 27370 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=20.73;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2832,338,0 chrI 27380 . T G 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=155;Dels=0.00;FS=2.376;HaplotypeScore=11.0727;MLEAC=2;MLEAF=1.00;MQ=35.29;MQ0=0;MQRankSum=-1.539;QD=19.14;ReadPosRankSum=1.227;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:2999,356,0 chrI 27417 . C T 2506 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.43;MQ0=0;QD=15.76;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2539,285,0 chrI 27476 . G A 1178 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.2984;MLEAC=2;MLEAF=1.00;MQ=26.12;MQ0=0;QD=12.40;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1211,138,0 chrI 27486 . G A 1119 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.46;MQ0=0;QD=15.12;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1152,132,0 chrI 27489 . G A 1024 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.10;MQ0=0;QD=14.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1057,120,0 chrI 27492 . A T 983 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=0;MQRankSum=1.213;QD=16.38;ReadPosRankSum=1.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1016,120,0 chrI 27494 . C T 1038 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.71;MQ0=0;QD=17.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1071,120,0 chrI 27498 . A T 990 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=0;QD=19.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1023,120,0 chrI 27504 . C A 985 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=0;QD=19.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1018,120,0 chrI 27505 . T G 889 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=0;QD=17.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:922,114,0 chrI 27506 . T A 923 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=0;QD=18.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:956,120,0 chrI 27507 . G A 929 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=0;QD=18.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:962,120,0 chrI 27510 . T C 949 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=12.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:982,120,0 chrI 27522 . C T 862 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=0;QD=11.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:895,111,0 chrI 27540 . A G 824 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.93;MQ0=0;QD=11.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:857,108,0 chrI 27561 . T G 739 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.42;MQ0=0;QD=10.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:96:772,96,0 chrI 27563 . C T 700 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.42;MQ0=0;QD=10.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:93:733,93,0 chrI 27573 . G A 394 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.354;DP=55;Dels=0.00;FS=17.404;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.59;MQ0=0;MQRankSum=-0.409;QD=7.16;ReadPosRankSum=1.354;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:1,54:55:54:427,54,0 chrI 27576 . A G 388 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=23.47;MQ0=0;MQRankSum=-1.532;QD=7.46;ReadPosRankSum=1.666;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:1,51:52:54:421,54,0 chrI 27582 . G A 422 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.81;MQ0=0;QD=8.61;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:57:455,57,0 chrI 27585 . A G 427 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=0;MQRankSum=-0.727;QD=9.28;ReadPosRankSum=2.343;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:2,44:46:57:460,57,0 chrI 27591 . T C 424 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=0;QD=10.87;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:57:457,57,0 chrI 27593 . A G 406 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=0;QD=10.41;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:54:439,54,0 chrI 27597 . A T 454 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.41;MQ0=0;MQRankSum=-1.368;QD=11.64;ReadPosRankSum=1.641;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:1,37:39:60:487,60,0 chrI 27611 . C A 365 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.33;MQ0=0;QD=10.43;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:48:398,48,0 chrI 27614 . T C 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.575;DP=17;Dels=0.00;FS=28.325;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.39;MQ0=0;MQRankSum=-0.945;QD=1.40;ReadPosRankSum=-1.827;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:3,14:17:6:55,6,0 chrI 27616 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=17;Dels=0.00;FS=22.304;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.39;MQ0=0;MQRankSum=-0.057;QD=1.28;ReadPosRankSum=-0.623;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:4,13:17:6:53,6,0 chrI 27617 . T C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.78;MQ0=0;QD=1.36;SB=-7.974e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:6:53,6,0 chrI 27619 . G T 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.076;DP=16;Dels=0.00;FS=27.482;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.78;MQ0=0;MQRankSum=-0.538;QD=1.42;ReadPosRankSum=-1.883;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:3,13:16:6:54,6,0 chrI 27627 . A G 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.78;MQ0=0;QD=2.69;SB=-7.595e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:9:75,9,0 chrI 27630 . A G 47.97 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=14.4976;MLEAC=2;MLEAF=1.00;MQ=24.78;MQ0=0;QD=3.00;SB=-8.595e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:9:80,9,0 chrI 27646 . T C 43.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.06;MQ0=0;MQRankSum=0.187;QD=0.68;ReadPosRankSum=1.679;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:9:76,9,0 chrI 27667 . A T 72.66 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=70;Dels=0.00;FS=16.435;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.36;MQ0=0;MQRankSum=-1.260;QD=1.04;ReadPosRankSum=1.654;SB=12.33 GT:AD:DP:GQ:PL 1/1:1,43:70:12:105,12,0 chrI 27668 . A T 79.66 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.34;MQ0=0;QD=1.15;SB=12.33 GT:AD:DP:GQ:PL 1/1:0,43:69:12:112,12,0 chrI 27681 . A G 154.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=4.523;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;MQRankSum=1.477;QD=2.27;ReadPosRankSum=1.681;SB=-4.731e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:21:187,21,0 chrI 27684 . A C 122.13 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=0;QD=2.14;SB=-3.491e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:18:155,18,0 chrI 27685 . G T 124.13 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=0;QD=2.18;SB=-3.421e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:18:157,18,0 chrI 27688 . A T 134.13 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;QD=2.24;SB=-3.451e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:18:167,18,0 chrI 27693 . G C 107.26 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;QD=1.82;SB=-2.663e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:15:140,15,0 chrI 27699 . T A 129.13 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=2.87;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,38:45:18:162,18,0 chrI 27701 . A T 128.13 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=2.85;SB=-1.691e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:18:161,18,0 chrI 27702 . A T 121.13 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=2.69;SB=-1.621e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:18:154,18,0 chrI 27703 . C G 120.13 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=2.67;SB=-1.561e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:18:153,18,0 chrI 27716 . T G 149.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;MQRankSum=1.249;QD=3.47;ReadPosRankSum=1.652;SB=-2.207e+01 GT:AD:DP:GQ:PL 1/1:1,42:43:21:182,21,0 chrI 27723 . A G 183.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=6.78;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:24:216,24,0 chrI 27725 . C T 185.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=6.85;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:24:218,24,0 chrI 27726 . A G 178.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=6.59;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:24:211,24,0 chrI 27729 . C A 172.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;QD=6.14;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:24:205,24,0 chrI 27732 . G T 180.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=6.21;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:24:213,24,0 chrI 27738 . A C 179.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=7.16;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:24:212,24,0 chrI 27744 . T C 149.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=5.52;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:21:182,21,0 chrI 27747 . T A 82.51 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=3.93;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:12:115,12,0 chrI 27749 . C T 98.26 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=4.68;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:15:131,15,0 chrI 27750 . G A 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=3.31;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:12:102,12,0 chrI 27756 . A G 97.26 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=13.8876;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=4.42;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:15:130,15,0 chrI 27761 . G A 103.26 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=15.8641;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=4.69;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:15:136,15,0 chrI 27781 . C T 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=2.14;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:79,9,0 chrI 27782 . C G 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=2.14;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:79,9,0 chrI 27783 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=0.99;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,22:22:6:53,6,0 chrI 27804 . C A 163.03 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=3.88;SB=-5.004e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:24:196,24,0 chrI 27810 . T C 271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;MQRankSum=-0.485;QD=5.42;ReadPosRankSum=1.663;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:36:304,36,0 chrI 27816 . G A 363 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=0;QD=6.72;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:45:396,45,0 chrI 27822 . T C 428 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;MQRankSum=-1.732;QD=6.90;ReadPosRankSum=1.621;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:54:461,54,0 chrI 27823 . C A 411 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=0;QD=6.52;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:51:444,51,0 chrI 27825 . C T 395 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=0;QD=5.64;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:51:428,51,0 chrI 27914 . T C 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;MQRankSum=1.117;QD=21.24;ReadPosRankSum=1.676;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2688,297,0 chrI 27948 . A G 1074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=4.357;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;MQRankSum=0.866;QD=17.90;ReadPosRankSum=1.617;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1107,126,0 chrI 27970 . T G 709 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.54;MQ0=0;QD=15.76;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:84:742,84,0 chrI 27983 . T A 572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.38;MQ0=0;MQRankSum=-0.409;QD=10.40;ReadPosRankSum=1.417;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:66:605,66,0 chrI 27997 . T C 967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;MQRankSum=1.050;QD=14.65;ReadPosRankSum=1.680;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1000,114,0 chrI 28007 . G C 1265 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=0;QD=16.87;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1298,147,0 chrI 28083 . T C 2729 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.2538;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=20.52;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2762,318,0 chrI 28117 . G C 1892 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=19.31;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1925,225,0 chrI 28127 . T C 1710 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=20.36;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1743,195,0 chrI 28321 . G A 1904 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=0;QD=20.70;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1937,231,0 chrI 28352 . C T 2250 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;QD=23.94;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2283,261,0 chrI 28384 . G C 1869 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=21.00;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1902,225,0 chrI 28385 . A G 1803 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=20.26;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1836,219,0 chrI 28433 . G A 1803 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=20.03;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1836,207,0 chrI 28458 . C T 2075 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=22.31;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2108,228,0 chrI 28495 . A G 1929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;MQRankSum=-0.995;QD=20.52;ReadPosRankSum=1.695;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1962,219,0 chrI 28517 . A G 1540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=80.0424;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;MQRankSum=-0.966;QD=16.21;ReadPosRankSum=1.696;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1573,180,0 chrI 28560 . A G 206.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.204;DP=132;Dels=0.00;FS=0.832;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=42.05;MQ0=0;MQRankSum=-2.873;QD=1.56;ReadPosRankSum=-7.588;SB=-1.190e+02 GT:AD:DP:GQ:PL 0/1:107,25:132:99:236,0,964 chrI 28650 . G T 1850 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=19.07;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1883,210,0 chrI 28666 . A G 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.802;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;MQRankSum=0.096;QD=18.85;ReadPosRankSum=1.700;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2069,234,0 chrI 28684 . A G 1888 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.4540;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=15.60;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:1921,225,0 chrI 28696 . G T 1658 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=14.54;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1691,192,0 chrI 28844 . C T 2218 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=20.92;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2251,252,0 chrI 28926 . A T 2647 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.1230;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;QD=22.43;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2680,303,0 chrI 29093 . A T 1227 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.74;MQ0=0;QD=18.88;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1260,147,0 chrI 29109 . G C 981 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=0;QD=15.82;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1014,117,0 chrI 29118 . C T 879 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=14.65;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:912,102,0 chrI 29126 . T C 851 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;QD=14.67;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:884,102,0 chrI 29131 . A G 803 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;QD=14.09;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:96:836,96,0 chrI 29154 . G A 687 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=14.02;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:78:720,78,0 chrI 29180 . T C 633 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=13.19;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:75:666,75,0 chrI 29209 . C T 510 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=14.57;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:63:543,63,0 chrI 29226 . C T 438 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.51;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:54:471,54,0 chrI 29227 . A G 432 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.34;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,33:35:54:465,54,0 chrI 29245 . G A 439 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=12.54;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:54:472,54,0 chrI 29282 . C T 182.03 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=14.7836;MLEAC=2;MLEAF=1.00;MQ=33.23;MQ0=0;QD=6.74;SB=-5.404e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:24:215,24,0 chrI 29322 . G C 679 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=16.97;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:90:712,90,0 chrI 29352 . T C 635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;MQRankSum=-0.133;QD=16.28;ReadPosRankSum=1.644;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:87:668,87,0 chrI 29354 . T A 649 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=16.64;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:84:682,84,0 chrI 29374 . C T 729 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=16.57;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:762,93,0 chrI 29397 . T C 75.51 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=3.43;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,21:22:12:108,12,0 chrI 29400 . C T 80.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.03;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:113,12,0 chrI 29402 . A T 80.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.03;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:113,12,0 chrI 29440 . G T 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=3.81;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:101,12,0 chrI 29441 . C T 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=3.86;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:102,12,0 chrI 29449 . A G 100.26 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;QD=5.01;SB=-2.727e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:15:133,15,0 chrI 29459 . C T 74.51 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=36.0170;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=4.38;SB=-2.752e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:107,12,0 chrI 29476 . A G 49.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;QD=4.54;SB=-3.096e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:82,9,0 chrI 29508 . T C 140.06 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.55;MQ0=0;QD=9.34;SB=-1.391e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:173,21,0 chrI 29522 . T A 226 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.69;MQ0=0;QD=12.56;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:33:259,33,0 chrI 29530 . C T 259 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=16.6808;MLEAC=2;MLEAF=1.00;MQ=23.70;MQ0=0;QD=12.95;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:36:292,36,0 chrI 29564 . T C 551 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=10.6567;MLEAC=2;MLEAF=1.00;MQ=27.14;MQ0=0;QD=14.89;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:72:584,72,0 chrI 29666 . C A 844 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.05;FS=0.000;HaplotypeScore=8.5207;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;QD=20.10;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:877,102,0 chrI 29693 . G A 976 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=24.40;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1009,114,0 chrI 29713 . T A 804 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=22.97;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:837,99,0 chrI 29746 . T C 436 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=12.8178;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=0;QD=20.76;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,20:21:57:469,57,0 chrI 29778 . G A 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=12.09;SB=-2.226e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:105,12,0 chrI 29782 . A T 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=10.50;SB=-2.239e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:106,12,0 chrI 29787 . G A 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=8.06;SB=-2.245e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:105,12,0 chrI 29817 . G A 179.03 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=0;QD=11.94;SB=-7.204e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:24:212,24,0 chrI 29849 . C T 265 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=25.6315;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=0;QD=8.28;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:36:298,36,0 chrI 29875 . T G 478 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.88;MQ0=0;QD=9.37;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:60:511,60,0 chrI 29883 . T C 510 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=98.4624;MLEAC=2;MLEAF=1.00;MQ=25.95;MQ0=0;QD=9.81;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:63:543,63,0 chrI 29908 . C T 531 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.88;MQ0=0;QD=9.32;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:66:564,66,0 chrI 29911 . A G 576 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=0;QD=10.11;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:72:609,72,0 chrI 29929 . A G 419 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.88;MQ0=0;QD=9.74;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:54:452,54,0 chrI 29931 . A C 417 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.88;MQ0=0;QD=9.70;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:54:450,54,0 chrI 29996 . T C 79.79 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;DP=15;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.15;MQ0=0;MQRankSum=1.504;QD=5.32;ReadPosRankSum=0.810;SB=-1.167e+02 GT:AD:DP:GQ:PL 0/1:1,14:15:4:109,0,4 chrI 30004 . T C 109.13 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;QD=7.28;SB=-1.471e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:18:142,18,0 chrI 30006 . T C 111.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;MQRankSum=-1.735;QD=6.95;ReadPosRankSum=0.000;SB=-1.491e+02 GT:AD:DP:GQ:PL 1/1:1,15:16:18:144,18,0 chrI 30051 . C T 155.03 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=12.92;SB=-4.303e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:188,24,0 chrI 30066 . T A 182.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;MQRankSum=-0.401;QD=14.00;ReadPosRankSum=1.470;SB=-4.302e+01 GT:AD:DP:GQ:PL 1/1:1,12:13:27:215,27,0 chrI 30071 . G A 211 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=15.07;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:30:244,30,0 chrI 30091 . A G 213 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=3.9676;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;QD=17.75;SB=-7.100e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:30:246,30,0 chrI 30153 . G A 1332 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=53.1319;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=0;QD=22.58;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1365,147,0 chrI 30204 . A G 1113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=4.523;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=0;MQRankSum=-1.121;QD=21.82;ReadPosRankSum=1.664;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1146,141,0 chrI 30209 . T A 855 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.06;MQ0=0;QD=20.36;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:888,111,0 chrI 30220 . G A 760 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.48;MQ0=0;QD=20.54;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:793,99,0 chrI 30239 . A G 584 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.30;MQ0=0;QD=19.47;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:81:617,81,0 chrI 30265 . T G 120.13 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=0;QD=13.35;SB=-2.207e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:153,18,0 chrI 30268 . C G 149.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=14.91;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:182,21,0 chrI 30274 . G A 151.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=8.9129;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=15.11;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:184,21,0 chrI 30275 . A G 148.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=8.9129;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=14.81;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:181,21,0 chrI 30277 . A G 151.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=8.9129;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=15.11;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:184,21,0 chrI 30290 . C A 164.06 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=12.62;SB=-7.388e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:21:197,21,0 chrI 30300 . C A 191.01 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.94;SB=-2.368e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:27:224,27,0 chrI 30307 . T C 228 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.00;SB=-1.516e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:30:261,30,0 chrI 30313 . A G 234 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.091;QD=12.32;ReadPosRankSum=1.552;SB=-1.516e-02 GT:AD:DP:GQ:PL 1/1:1,18:19:30:267,30,0 chrI 30335 . C T 301 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.54;SB=-8.699e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:36:334,36,0 chrI 30351 . A G 399 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;MQRankSum=0.168;QD=12.87;ReadPosRankSum=1.621;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:1,30:31:48:432,48,0 chrI 30352 . C A 414 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=13.80;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:48:447,48,0 chrI 30356 . C G 473 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;QD=12.78;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:57:506,57,0 chrI 30361 . A T 527 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;QD=13.51;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:60:560,60,0 chrI 30371 . C A 484 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=11.80;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:57:517,57,0 chrI 30381 . T C 429 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=12.26;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:54:462,54,0 chrI 30413 . G A 374 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.13;MQ0=0;QD=12.90;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:48:407,48,0 chrI 30422 . G A 385 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.75;MQ0=0;QD=13.28;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:51:418,51,0 chrI 30427 . G C 378 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;QD=13.50;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:51:411,51,0 chrI 30432 . G T 300 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=12.50;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:42:333,42,0 chrI 30434 . C T 272 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=11.33;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:39:305,39,0 chrI 30468 . G A 75.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.84;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:15:108,15,0 chrI 30478 . C T 75.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=8.36;SB=-6.514e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:108,15,0 chrI 30493 . G A 54.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.06;SB=-4.345e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:87,12,0 chrI 30516 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=2.01;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:43,6,0 chrI 30522 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=2.41;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrI 30548 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=3.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:43,6,0 chrI 30551 . G A 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=9.49;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:70,9,0 chrI 30558 . G A 59.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=11.90;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:92,12,0 chrI 30583 . A G 39.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=5.00;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:72,9,0 chrI 30601 . C T 71.51 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=5.11;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:104,12,0 chrI 30602 . G A 60.51 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=4.32;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:93,12,0 chrI 30613 . C T 93.26 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=4.66;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:15:126,15,0 chrI 30614 . T C 90.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=0;MQRankSum=0.908;QD=4.30;ReadPosRankSum=1.569;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:1,20:21:15:123,15,0 chrI 30624 . T A 128.13 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=4.93;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:18:161,18,0 chrI 30662 . T G 334 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.14;MQ0=0;QD=6.30;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:45:367,45,0 chrI 30669 . T C 336 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=0;QD=6.72;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:45:369,45,0 chrI 30670 . T C 332 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=0;QD=6.64;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:45:365,45,0 chrI 30713 . T G 509 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.03;MQ0=0;QD=9.43;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:66:542,66,0 chrI 30747 . A C 258 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.08;MQ0=0;QD=8.90;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:33:291,33,0 chrI 30749 . G A 257 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.08;MQ0=0;QD=8.86;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:33:290,33,0 chrI 30755 . C G 251 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.85;MQ0=0;QD=7.84;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:33:284,33,0 chrI 30782 . T C 110.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=0;MQRankSum=0.714;QD=3.24;ReadPosRankSum=1.631;SB=-6.514e+01 GT:AD:DP:GQ:PL 1/1:1,33:34:18:143,18,0 chrI 30787 . T C 285 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.07;MQ0=0;QD=7.31;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:39:318,39,0 chrI 30817 . T C 692 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.07;MQ0=0;QD=14.42;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:87:725,87,0 chrI 30840 . G A 1427 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;QD=20.39;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1460,162,0 chrI 30852 . T C 1480 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.65;MQ0=0;QD=21.45;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1513,174,0 chrI 30980 . G A 597 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.66;MQ0=0;QD=14.56;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:75:630,75,0 chrI 30987 . T G 684 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;QD=17.10;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:84:717,84,0 chrI 31018 . G A 769 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;QD=15.08;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:802,93,0 chrI 31026 . G C 669 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;QD=12.87;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:84:702,84,0 chrI 31058 . G A 722 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=14.73;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:87:755,87,0 chrI 31152 . C T 213.01 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.14;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:27:246,27,0 chrI 31154 . G A 151.06 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.19;SB=-1.611e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:21:184,21,0 chrI 31168 . A G 268 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.16;MQ0=0;QD=8.38;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:33:301,33,0 chrI 31176 . A G 332 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=9.22;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:42:365,42,0 chrI 31212 . G A 1108 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=17.05;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1141,129,0 chrI 31391 . A G 1003 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=20.06;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1036,117,0 chrI 31403 . T A 974 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=17.71;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1007,114,0 chrI 31635 . T C 1739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-1.951;QD=22.01;ReadPosRankSum=2.356;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1772,201,0 chrI 31755 . C T 3068 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.5188;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=23.97;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3101,348,0 chrI 31821 . C T 2922 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.83;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2955,321,0 chrI 31848 . T C 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.452;DP=141;Dels=0.00;FS=16.260;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.976;QD=20.88;ReadPosRankSum=4.701;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:8,133:141:99:2977,342,0 chrI 31975 . C T 4117.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.4798;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.18;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4117,447,0 chrI 31989 . T C 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.803;DP=197;Dels=0.00;FS=2.939;HaplotypeScore=12.3069;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=0.666;QD=17.84;ReadPosRankSum=2.424;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:2,188:197:99:3514,389,0 chrI 32145 . C T 3927.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.3800;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.34;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3927,453,0 chrI 32158 . T C 4220.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.4718;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=0.914;QD=19.54;ReadPosRankSum=1.700;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4220,480,0 chrI 32271 . G A 5997.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=23.9982;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.92;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,296:301:99:5997,681,0 chrI 32511 . C T 9014.01 filter AC=2;AF=1.00;AN=2;DP=426;Dels=0.00;FS=0.000;HaplotypeScore=20.5035;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.16;SB=-5.058e+03 GT:AD:DP:GQ:PL 1/1:0,426:426:99:9014,1037,0 chrI 32652 . A C 5747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=23.3613;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-2.349;QD=19.42;ReadPosRankSum=2.416;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,292:296:99:5747,651,0 chrI 32883 . C T 2568 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.05;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2601,288,0 chrI 32986 . G T 2962 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=21.01;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2995,324,0 chrI 32989 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=20.43;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2913,315,0 chrI 33040 . A G 2131 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;QD=14.90;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2164,249,0 chrI 33048 . A C 1983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.871;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;MQRankSum=-0.561;QD=14.27;ReadPosRankSum=1.707;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2016,231,0 chrI 33070 . A T 1837 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;QD=14.46;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1870,210,0 chrI 33077 . G A 1789 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=14.09;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1822,204,0 chrI 33086 . G A 1875 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=14.88;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1908,216,0 chrI 33147 . G T 2496 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=17.83;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2529,279,0 chrI 33152 . T C 2636 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.31;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2669,306,0 chrI 33200 . C T 3186 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=19.19;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3219,372,0 chrI 33293 . A T 3226.07 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=22.25;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3259,369,0 chrI 33328 . C A 2930 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=18.90;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2963,339,0 chrI 33347 . T A 2973 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=18.94;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3006,345,0 chrI 33348 . G C 3047 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=19.16;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3080,357,0 chrI 33502 . A G 5803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=249;Dels=0.00;FS=4.988;HaplotypeScore=17.3298;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.479;QD=23.31;ReadPosRankSum=1.718;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,245:249:99:5803,660,0 chrI 33548 . A C 5849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=252;Dels=0.00;FS=4.912;HaplotypeScore=19.5033;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.056;QD=23.21;ReadPosRankSum=1.704;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:1,250:252:99:5849,654,0 chrI 33612 . A G 5090.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.75;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5090,579,0 chrI 33892 . C G 6898.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=27.5053;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.11;SB=-3.303e+03 GT:AD:DP:GQ:PL 1/1:0,308:312:99:6898,780,0 chrI 33996 . A G 7164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.144;DP=342;Dels=0.00;FS=7.837;HaplotypeScore=36.6818;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.678;QD=20.95;ReadPosRankSum=1.132;SB=-3.244e+03 GT:AD:DP:GQ:PL 1/1:2,335:342:99:7164,801,0 chrI 34170 . T A 7595.01 PASS AC=2;AF=1.00;AN=2;DP=333;Dels=0.00;FS=0.000;HaplotypeScore=32.8610;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.81;SB=-3.575e+03 GT:AD:DP:GQ:PL 1/1:0,332:333:99:7595,846,0 chrI 34308 . C T 7303.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.13;SB=-3.782e+03 GT:AD:DP:GQ:PL 1/1:0,330:330:99:7303,816,0 chrI 34515 . T C 5339.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.77;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:5339,606,0 chrI 34554 . A G 4488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.153;DP=222;Dels=0.00;FS=4.987;HaplotypeScore=15.6992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.769;QD=20.22;ReadPosRankSum=3.405;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:4,217:222:99:4488,507,0 chrI 34991 . A G 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.674;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.337;QD=16.59;ReadPosRankSum=2.864;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:1626,183,0 chrI 35059 . G A 1820 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=18.57;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1853,204,0 chrI 35070 . C T 1575 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=17.70;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1608,174,0 chrI 35466 . G A 5437.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=22.47;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5437,606,0 chrI 35508 . A G 3946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.324;DP=221;Dels=0.00;FS=8.671;HaplotypeScore=6.9289;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;MQRankSum=-1.428;QD=17.86;ReadPosRankSum=3.420;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:4,214:221:99:3946,444,0 chrI 35514 . T C 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=223;Dels=0.00;FS=10.143;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;MQRankSum=0.486;QD=17.22;ReadPosRankSum=2.968;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:3,218:223:99:3839,435,0 chrI 35565 . A G 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;MQRankSum=-0.645;QD=15.77;ReadPosRankSum=1.639;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:3517,402,0 chrI 35568 . A G 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.172;DP=221;Dels=0.00;FS=14.223;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=0.302;QD=17.14;ReadPosRankSum=4.081;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:6,214:221:99:3789,423,0 chrI 35631 . G C 3955.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.4434;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=17.98;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:3955,447,0 chrI 35668 . G A 4333.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.54;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4333,477,0 chrI 35736 . G A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=19.13;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3788,432,0 chrI 35751 . T C 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=195;Dels=0.01;FS=6.180;HaplotypeScore=10.2677;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=-0.744;QD=19.44;ReadPosRankSum=2.399;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:3791,423,0 chrI 35796 . T C 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.233;DP=156;Dels=0.00;FS=14.274;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-0.513;QD=19.26;ReadPosRankSum=3.357;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:4,151:156:99:3037,348,0 chrI 35818 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.425;QD=20.86;ReadPosRankSum=1.710;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3338,378,0 chrI 35970 . T C 4215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.667;DP=202;Dels=0.00;FS=5.394;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.458;QD=20.87;ReadPosRankSum=2.965;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:3,199:202:99:4215,489,0 chrI 36005 . A G 4438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=201;Dels=0.00;FS=8.956;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.861;QD=22.08;ReadPosRankSum=2.401;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4438,498,0 chrI 36048 . C G 4861.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.15;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4861,552,0 chrI 36123 . C T 3433.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.51;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3433,381,0 chrI 36160 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.51;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3405,378,0 chrI 36313 . A G 1879 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.17;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1912,219,0 chrI 36524 . C T 2938 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=26.71;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2971,321,0 chrI 36574 . A G 1773 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1806,204,0 chrI 36637 . A G 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.544;QD=23.26;ReadPosRankSum=1.619;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2196,246,0 chrI 36898 . C T 2052 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.32;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2085,234,0 chrI 37008 . C A 1907 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.26;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1940,210,0 chrI 37019 . A G 1732 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=24.06;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1765,201,0 chrI 37069 . C T 2008 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=24.79;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2041,219,0 chrI 37255 . T C 1391 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.5450;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=19.87;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1424,162,0 chrI 37294 . T C 1856 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.84;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1889,216,0 chrI 37315 . T A 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=0.772;QD=18.73;ReadPosRankSum=1.690;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1606,186,0 chrI 37330 . A G 1744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.694;DP=91;Dels=0.00;FS=3.793;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-1.466;QD=19.16;ReadPosRankSum=-0.019;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1777,181,0 chrI 37553 . A G 2953 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.04;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2986,336,0 chrI 37595 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.18;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3523,384,0 chrI 37885 . C T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.53;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3703,420,0 chrI 37976 . C A 2725 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.34;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2758,306,0 chrI 38120 . A T 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=188;Dels=0.00;FS=7.423;HaplotypeScore=14.7817;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.042;QD=22.90;ReadPosRankSum=2.290;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4305,480,0 chrI 38236 . A G 4687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.339;DP=203;Dels=0.00;FS=21.107;HaplotypeScore=21.1252;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-1.153;QD=23.09;ReadPosRankSum=3.365;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:4,198:203:99:4687,522,0 chrI 38361 . C T 4241.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.32;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4241,459,0 chrI 38490 . C G 4146.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.0802;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;QD=19.11;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4146,462,0 chrI 38504 . T G 3119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.709;DP=192;Dels=0.00;FS=11.532;HaplotypeScore=3.1526;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;MQRankSum=1.556;QD=16.24;ReadPosRankSum=2.963;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:3,187:192:99:3152,354,0 chrI 38508 . G T 3090 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=0;QD=17.56;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3123,333,0 chrI 38524 . C A 2538 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=39.47;MQ0=0;QD=13.79;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:2571,288,0 chrI 38533 . T C 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.110;DP=170;Dels=0.00;FS=9.172;HaplotypeScore=6.4372;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;MQRankSum=-2.596;QD=13.18;ReadPosRankSum=3.346;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:4,166:170:99:2273,236,0 chrI 38657 . G A 4458.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=15.9058;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.34;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4458,483,0 chrI 38689 . G C 4024.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.99;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,179:183:99:4024,453,0 chrI 38888 . A C 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.556;QD=22.47;ReadPosRankSum=1.710;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3572,408,0 chrI 38980 . G A 2853 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.82;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2886,312,0 chrI 39009 . T C 2443 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.86;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2476,285,0 chrI 39105 . A G 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=177;Dels=0.00;FS=4.170;HaplotypeScore=6.5777;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-0.782;QD=19.66;ReadPosRankSum=1.712;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3479,393,0 chrI 39123 . C T 3985.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.51;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3985,450,0 chrI 39162 . C G 4028.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.77;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4028,453,0 chrI 39795 . G A 2029 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.45;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2062,225,0 chrI 39901 . T C 2230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=3.777;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=1.006;QD=21.04;ReadPosRankSum=1.699;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2263,255,0 chrI 39919 . T C 2141 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.46;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2174,243,0 chrI 39920 . T C 2081 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.09;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2114,240,0 chrI 39963 . G A 1675 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=17.82;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1708,189,0 chrI 40064 . C T 2204 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.40;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2237,252,0 chrI 40237 . C T 2430 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.06;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2463,273,0 chrI 40380 . G A 2726 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2759,309,0 chrI 40860 . A G 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.789;QD=19.75;ReadPosRankSum=1.710;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3154,357,0 chrI 40866 . T C 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=154;Dels=0.00;FS=14.402;HaplotypeScore=5.8210;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.013;QD=19.09;ReadPosRankSum=2.914;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:3,149:154:99:2973,333,0 chrI 40914 . C G 3169 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=15.6066;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.45;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3202,363,0 chrI 41278 . G A 4963.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.1187;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.66;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4963,564,0 chrI 41481 . A G 4661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=4.5429;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=-1.295;QD=20.90;ReadPosRankSum=1.685;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:1,221:223:99:4661,537,0 chrI 41497 . A C 4512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;MQRankSum=-1.334;QD=19.88;ReadPosRankSum=1.701;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4512,519,0 chrI 41499 . A G 4560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=232;Dels=0.00;FS=5.679;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=0.170;QD=19.66;ReadPosRankSum=2.935;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:3,228:232:99:4560,504,0 chrI 41587 . C T 4558.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=16.6837;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.08;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:4558,504,0 chrI 41736 . T C 2685 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=19.89;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2718,315,0 chrI 41739 . A G 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=0.117;QD=20.09;ReadPosRankSum=1.706;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2705,303,0 chrI 41802 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=18.82;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2141,240,0 chrI 41883 . C T 1845 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.21;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1878,210,0 chrI 41906 . G A 1529 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.16;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1562,174,0 chrI 41987 . C T 705 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.14;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:738,87,0 chrI 42048 . T G 1019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=54;Dels=0.00;FS=4.455;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.686;QD=18.87;ReadPosRankSum=1.667;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1052,120,0 chrI 42115 . T C 1411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.607;DP=77;Dels=0.00;FS=5.027;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-2.160;QD=18.32;ReadPosRankSum=3.711;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:5,72:77:99:1444,165,0 chrI 42257 . G A 3650.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=25.89;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3650,405,0 chrI 42484 . G A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=16.74;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:3833,411,0 chrI 42527 . T C 3301.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=19.19;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,168:172:99:3301,369,0 chrI 42554 . A T 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;MQRankSum=-0.521;QD=20.44;ReadPosRankSum=1.659;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2956,324,0 chrI 42562 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=19.78;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2862,321,0 chrI 42590 . G A 2073 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=18.35;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2106,246,0 chrI 42629 . A G 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.613;QD=20.15;ReadPosRankSum=1.679;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2653,297,0 chrI 42635 . C T 2581 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.01;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2614,294,0 chrI 42684 . G A 2575 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6964;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.96;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2608,285,0 chrI 43004 . G A 2069 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.9098;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.25;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:2102,237,0 chrI 43137 . C T 5133.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.65;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5133,567,0 chrI 43478 . G A 3778.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.7308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3778,429,0 chrI 43565 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.133;QD=22.10;ReadPosRankSum=1.688;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3448,399,0 chrI 43691 . C T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.3473;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3495,387,0 chrI 43784 . C G 3448.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.68;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3448,387,0 chrI 43838 . G A 3838.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3838,420,0 chrI 44384 . A G 4941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=218;Dels=0.00;FS=3.522;HaplotypeScore=16.0375;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.331;QD=22.67;ReadPosRankSum=1.716;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:1,215:218:99:4941,567,0 chrI 44588 . A G 4737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.2095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.398;QD=21.43;ReadPosRankSum=1.716;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:1,217:221:99:4737,531,0 chrI 44675 . G A 4129.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.4473;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.95;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4129,471,0 chrI 44891 . A G 3042 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.9587;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.63;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3075,348,0 chrI 44935 . C A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.2404;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3337,366,0 chrI 45024 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=159.8106;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.59;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3605,399,0 chrI 45198 . G A 2311 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.40;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2344,276,0 chrI 45431 . G A 1355 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.07;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1388,162,0 chrI 45546 . A T 2371 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=18.24;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2404,270,0 chrI 45831 . G C 3104 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.82;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3137,357,0 chrI 46030 . G A 3734.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.97;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3734,426,0 chrI 46375 . A T 7583.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=369;Dels=0.00;FS=3.156;HaplotypeScore=36.3293;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.180;QD=20.55;ReadPosRankSum=1.656;SB=-4.676e+03 GT:AD:DP:GQ:PL 1/1:1,368:369:99:7583,826,0 chrI 46447 . C G 7119.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=24.0233;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.18;SB=-3.869e+03 GT:AD:DP:GQ:PL 1/1:0,314:321:99:7119,816,0 chrI 46723 . A G 5124.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.18;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5124,582,0 chrI 46837 . G A 4078.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.81;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4078,459,0 chrI 46846 . T C 3899.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.31;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3899,438,0 chrI 46894 . A G 2872 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=17.73;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2905,324,0 chrI 46912 . T G 2528 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.01;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2561,291,0 chrI 46966 . T C 2090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=3.786;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.189;QD=18.83;ReadPosRankSum=1.669;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2123,237,0 chrI 47015 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.38;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3073,336,0 chrI 47044 . A C 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=128;Dels=0.00;FS=6.699;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-1.385;QD=22.32;ReadPosRankSum=2.411;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2890,330,0 chrI 47206 . A G 2692 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.79;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2725,321,0 chrI 47518 . A G 4074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=19.8327;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.880;QD=22.26;ReadPosRankSum=1.675;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4074,468,0 chrI 47660 . T C 4156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.3539;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.198;QD=21.42;ReadPosRankSum=1.714;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:4156,477,0 chrI 47690 . T C 3808.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.67;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3808,426,0 chrI 47896 . C T 4604.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=16.9882;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.57;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4604,519,0 chrI 48115 . G C 2064 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.20;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2097,234,0 chrI 48286 . A T 1223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=74;Dels=0.00;FS=3.057;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.783;QD=16.53;ReadPosRankSum=2.350;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1256,141,0 chrI 48751 . T C 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=157;Dels=0.00;FS=6.026;HaplotypeScore=18.3404;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.706;QD=19.99;ReadPosRankSum=2.863;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:3,151:157:99:3171,360,0 chrI 48815 . T C 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=154;Dels=0.00;FS=2.941;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=2.000;QD=23.69;ReadPosRankSum=2.401;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3649,408,0 chrI 48890 . C T 4203.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.3170;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.12;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4203,459,0 chrI 49103 . C T 2352 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.4581;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=18.09;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2385,273,0 chrI 49114 . T C 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=137;Dels=0.00;FS=10.278;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-0.226;QD=19.86;ReadPosRankSum=2.395;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2754,306,0 chrI 49247 . C T 2192 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.83;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2225,243,0 chrI 49403 . C T 2180 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.57;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2213,252,0 chrI 49589 . T C 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.033;QD=23.17;ReadPosRankSum=1.702;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2674,300,0 chrI 49871 . C T 2052 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.55;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2085,228,0 chrI 50024 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.05;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2964,324,0 chrI 50204 . A G 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=148;Dels=0.00;FS=10.835;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.871;QD=21.43;ReadPosRankSum=2.885;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3205,360,0 chrI 50343 . A G 2468 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.46;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2501,282,0 chrI 50354 . C T 2382 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.21;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2415,273,0 chrI 50384 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.20;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2832,315,0 chrI 50432 . T C 2628 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.27;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2661,297,0 chrI 50456 . G A 2249 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.22;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2282,252,0 chrI 50498 . A G 2130 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.48;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2163,246,0 chrI 50660 . T A 1946 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=17.53;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1979,222,0 chrI 50663 . C T 1985 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=18.05;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2018,228,0 chrI 50741 . T C 2278 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.98;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2311,264,0 chrI 50840 . A G 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=131;Dels=0.00;FS=2.978;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.880;QD=21.29;ReadPosRankSum=2.336;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2822,321,0 chrI 50954 . C G 2751 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.92;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2784,315,0 chrI 51095 . G A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.12;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3653,396,0 chrI 51287 . T C 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=151;Dels=0.00;FS=16.302;HaplotypeScore=9.7004;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.921;QD=20.64;ReadPosRankSum=3.273;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:4,147:151:99:3150,354,0 chrI 51321 . T C 2713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=133;Dels=0.00;FS=6.120;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.120;QD=20.40;ReadPosRankSum=2.376;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2746,315,0 chrI 51371 . A C 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=143;Dels=0.00;FS=3.010;HaplotypeScore=11.4886;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.376;QD=20.99;ReadPosRankSum=2.415;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3034,342,0 chrI 51434 . A G 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=108;Dels=0.00;FS=2.722;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.330;QD=19.31;ReadPosRankSum=2.404;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2119,240,0 chrI 51951 . T G 1686 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.34;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1719,201,0 chrI 52164 . C T 4881.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.47;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4881,543,0 chrI 52310 . A G 3707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=176;Dels=0.00;FS=5.615;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-2.359;QD=21.06;ReadPosRankSum=2.960;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:3,171:176:99:3707,411,0 chrI 52603 . A T 1230 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=16.62;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1263,144,0 chrI 52613 . G A 1200 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=17.65;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1233,135,0 chrI 52632 . T C 1405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=4.094;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=1.552;QD=18.25;ReadPosRankSum=1.687;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1438,162,0 chrI 52733 . A G 2007 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.07;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2040,231,0 chrI 52846 . G A 2285 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.03;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=19.36;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2318,255,0 chrI 52849 . A G 2350 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.50;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,121:127:99:2383,270,0 chrI 52858 . T C 2526 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.14;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2559,294,0 chrI 52939 . C T 2893 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=20.96;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2926,327,0 chrI 52951 . G T 2787 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=21.60;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2820,309,0 chrI 52984 . A G 2924 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.51;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2957,336,0 chrI 52996 . A G 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=4.638;HaplotypeScore=4.7458;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-0.238;QD=17.99;ReadPosRankSum=1.667;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2912,333,0 chrI 53146 . T G 3999.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=22.09;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3999,450,0 chrI 53167 . A G 3980.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.63;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3980,453,0 chrI 53266 . C T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.16;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3768,420,0 chrI 53542 . C T 4670.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.2744;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.89;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4670,519,0 chrI 53836 . A G 3141 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=21.66;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3174,366,0 chrI 53843 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=20.54;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2949,330,0 chrI 53851 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=20.05;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2740,297,0 chrI 53935 . A T 2438 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.39;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2471,270,0 chrI 54175 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.44;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3366,387,0 chrI 54198 . G A 3793.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.41;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3793,417,0 chrI 54244 . A G 3875.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.27;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3875,438,0 chrI 54319 . T C 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=166;Dels=0.00;FS=2.748;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.750;QD=22.17;ReadPosRankSum=2.420;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3681,408,0 chrI 54478 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.50;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3192,351,0 chrI 54481 . T C 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.405;DP=162;Dels=0.00;FS=9.179;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.081;QD=18.56;ReadPosRankSum=3.373;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:4,158:162:99:3039,342,0 chrI 54508 . A G 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.2937;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.412;QD=16.31;ReadPosRankSum=1.691;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:2790,318,0 chrI 54661 . G T 2116 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=16.79;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2149,246,0 chrI 54679 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=16.60;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:1992,231,0 chrI 54742 . A C 1873 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=18.01;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1906,225,0 chrI 54784 . A G 1431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.2861;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.072;QD=16.84;ReadPosRankSum=1.691;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1464,165,0 chrI 54806 . T C 947 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=15.27;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:980,108,0 chrI 55145 . C T 1933 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.35;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1966,231,0 chrI 55171 . A G 2224 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.59;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2257,255,0 chrI 55213 . A C 2194 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8881;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=20.31;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2227,255,0 chrI 55256 . A G 2793 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.65;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2826,321,0 chrI 55327 . C A 2202 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.2723;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.97;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2235,246,0 chrI 55508 . T C 2551 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.58;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2584,291,0 chrI 55688 . T C 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.063;QD=20.03;ReadPosRankSum=1.701;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,109:113:99:2296,255,0 chrI 55793 . T C 2187 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4225;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.06;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2220,249,0 chrI 56007 . A G 3980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=5.010;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.949;QD=23.55;ReadPosRankSum=1.608;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3980,450,0 chrI 56107 . T C 2387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=114;Dels=0.00;FS=3.041;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.751;QD=20.94;ReadPosRankSum=2.363;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2420,276,0 chrI 56129 . T C 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.324;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-0.765;QD=19.42;ReadPosRankSum=1.678;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2557,288,0 chrI 56144 . T G 2733 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.5736;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=18.85;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2766,315,0 chrI 56195 . A G 3350.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=18.93;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3350,375,0 chrI 56351 . G A 2839 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.18;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2872,315,0 chrI 56786 . G A 2016 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.16;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2049,231,0 chrI 56871 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=16.78;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2265,243,0 chrI 56878 . T C 2030 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=104.5816;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=15.74;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2063,237,0 chrI 56904 . G C 1756 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.72;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1789,198,0 chrI 57041 . C T 2198 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2231,246,0 chrI 57155 . G A 3045 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.5689;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.75;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3078,357,0 chrI 57320 . C T 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=4.225;HaplotypeScore=8.1969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.521;QD=20.16;ReadPosRankSum=-0.465;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3307,378,0 chrI 57669 . T C 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=158;Dels=0.00;FS=11.124;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.561;QD=22.52;ReadPosRankSum=2.955;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:3,153:158:99:3558,396,0 chrI 58073 . G A 3164 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.67;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3197,357,0 chrI 58490 . A T 4767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=5.2918;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-0.396;QD=20.20;ReadPosRankSum=1.717;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:4767,525,0 chrI 58494 . C T 4590.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=3.6387;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=19.96;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4590,498,0 chrI 58600 . G T 4897.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;QD=23.43;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4897,540,0 chrI 58794 . G A 4746.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.4175;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.71;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4746,522,0 chrI 58827 . G A 4155.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.21;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4155,450,0 chrI 59073 . C T 4116.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.13;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4116,453,0 chrI 59229 . G T 3895.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.5511;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.78;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3895,429,0 chrI 59349 . A C 4565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=209;Dels=0.00;FS=4.856;HaplotypeScore=12.7333;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.066;QD=21.84;ReadPosRankSum=1.715;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4565,528,0 chrI 59394 . G A 4561.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.7796;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.03;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,203:207:99:4561,513,0 chrI 59475 . C T 4708.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=6.7278;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.06;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:4708,525,0 chrI 59496 . A G 5169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=281;Dels=0.00;FS=8.381;HaplotypeScore=11.4810;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.039;QD=18.40;ReadPosRankSum=2.414;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:2,278:281:99:5169,588,0 chrI 59659 . C G 5188.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=19.1786;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=19.95;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,255:260:99:5188,582,0 chrI 59976 . T C 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=3.664;HaplotypeScore=7.3698;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-0.726;QD=20.01;ReadPosRankSum=1.713;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3581,405,0 chrI 59985 . T C 3278.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.21;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,174:180:99:3278,372,0 chrI 60198 . C T 3097 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.11;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3130,339,0 chrI 60246 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.8816;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.13;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3109,342,0 chrI 60384 . C T 3593.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.95;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3593,396,0 chrI 60417 . C T 3891.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.7775;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.02;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3891,429,0 chrI 60526 . A G 4033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=179;Dels=0.00;FS=9.894;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.894;QD=22.53;ReadPosRankSum=2.422;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,175:179:99:4033,450,0 chrI 60774 . T C 7841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=348;Dels=0.00;FS=5.991;HaplotypeScore=19.1263;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=2.032;QD=22.53;ReadPosRankSum=2.951;SB=-4.067e+03 GT:AD:DP:GQ:PL 1/1:3,344:348:99:7841,897,0 chrI 60912 . A G 7161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=329;Dels=0.00;FS=6.955;HaplotypeScore=24.1872;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.354;QD=21.77;ReadPosRankSum=2.390;SB=-3.555e+03 GT:AD:DP:GQ:PL 1/1:2,327:329:99:7161,813,0 chrI 62361 . T C 4575.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=18.4495;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.61;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4575,513,0 chrI 62654 . C T 1876 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1909,210,0 chrI 63529 . G A 3101 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:3134,345,0 chrI 65365 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.4434;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.19;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2470,276,0 chrI 65451 . A C 1080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=0.124;QD=19.29;ReadPosRankSum=1.670;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1113,123,0 chrI 65453 . A G 1004 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=18.25;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1037,120,0 chrI 65506 . T C 990 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=19.04;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1023,114,0 chrI 65514 . A T 882 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=15.75;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:915,105,0 chrI 65570 . A G 815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-0.704;QD=15.98;ReadPosRankSum=2.354;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:96:848,96,0 chrI 65590 . T C 609 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=15.22;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:72:642,72,0 chrI 65871 . G A 1503 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.78;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1536,165,0 chrI 65892 . A C 1404 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=16.71;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1437,162,0 chrI 65910 . T C 1531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.725;QD=17.40;ReadPosRankSum=1.611;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,85:88:99:1564,180,0 chrI 65991 . G A 3427.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=23.16;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3427,375,0 chrI 66003 . T C 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.2311;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-1.455;QD=19.97;ReadPosRankSum=1.686;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3029,351,0 chrI 66033 . A G 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=141;Dels=0.00;FS=3.796;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=1.259;QD=18.72;ReadPosRankSum=1.707;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:2672,303,0 chrI 67269 . A G 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=209;Dels=0.00;FS=6.934;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.125;QD=17.94;ReadPosRankSum=2.390;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:2,204:209:99:3749,426,0 chrI 67275 . G A 3738.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=17.55;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:3738,405,0 chrI 67421 . A C 6314.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=9.8682;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.92;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:0,285:288:99:6314,708,0 chrI 67441 . G A 5887.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=12.1089;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.80;SB=-2.988e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:5887,645,0 chrI 67476 . C G 4923.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=23.0076;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=19.93;SB=-2.902e+03 GT:AD:DP:GQ:PL 1/1:0,242:247:99:4923,555,0 chrI 69388 . C T 4445.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=19.0555;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.93;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4445,489,0 chrI 69603 . T C 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=4.960;HaplotypeScore=7.8667;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.332;QD=20.11;ReadPosRankSum=1.708;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2868,324,0 chrI 69675 . G A 719.20 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.176;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=1;MLEAF=0.500;MQ=51.68;MQ0=0;MQRankSum=2.151;QD=7.82;ReadPosRankSum=4.246;SB=-6.144e+02 GT:AD:DP:GQ:PL 0/1:10,82:92:2:748,0,2 chrI 69730 . T A 70.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=196.8120;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;MQRankSum=1.760;QD=0.93;ReadPosRankSum=-4.275;SB=-2.551e+01 GT:AD:DP:GQ:PL 1/1:69,7:76:12:103,12,0 chrI 69759 . G A 1035 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=15.22;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1068,120,0 chrI 70024 . T C 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-1.347;QD=20.76;ReadPosRankSum=1.612;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3022,348,0 chrI 70045 . A G 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=0.890;QD=20.66;ReadPosRankSum=1.708;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3028,351,0 chrI 70071 . C T 3489.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.89;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3489,384,0 chrI 70280 . A G 2991 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.52;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3024,348,0 chrI 70905 . G C 285 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.04;FS=0.000;HaplotypeScore=17.7837;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=11.87;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,22:23:36:318,36,0 chrI 71601 . G A 1407 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=18.51;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1440,162,0 chrI 75211 . T C 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.086;QD=24.74;ReadPosRankSum=1.703;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2952,333,0 chrI 76368 . G C 4673.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=4.4742;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=20.06;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:4673,537,0 chrI 76386 . G A 5305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=254;Dels=0.00;FS=3.203;HaplotypeScore=6.9723;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-1.157;QD=20.89;ReadPosRankSum=-0.445;SB=-3.203e+03 GT:AD:DP:GQ:PL 1/1:1,252:254:99:5305,588,0 chrI 76417 . T C 4569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=15.9961;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-0.686;QD=18.50;ReadPosRankSum=1.718;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:1,244:247:99:4569,516,0 chrI 76456 . G A 4603.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=24.5545;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.01;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4603,504,0 chrI 76496 . A G 3756.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.97;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3756,417,0 chrI 76497 . A G 3740.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.7409;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.89;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:3740,414,0 chrI 77115 . G T 3437.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2683;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.46;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3437,387,0 chrI 77381 . G A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.9683;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.88;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,166:171:99:3571,405,0 chrI 81442 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3877,432,0 chrI 81980 . A G 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=199;Dels=0.00;FS=4.216;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.875;QD=22.51;ReadPosRankSum=1.715;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4480,495,0 chrI 82226 . A G 4287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=194;Dels=0.00;FS=3.265;HaplotypeScore=13.0135;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.660;QD=22.10;ReadPosRankSum=1.714;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4287,489,0 chrI 82379 . G A 4205.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.68;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4205,465,0 chrI 85480 . C T 3803.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.8613;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.37;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3803,414,0 chrI 85751 . C T 2318 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2351,264,0 chrI 88173 . C A 2874 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.38;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2907,330,0 chrI 88212 . C T 2645 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.66;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2678,300,0 chrI 88393 . A C 2397 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.79;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2430,276,0 chrI 88638 . A G 2629 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.37;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2662,306,0 chrI 88645 . G C 2720 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.09;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2753,312,0 chrI 88782 . G A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.6923;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.52;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3288,360,0 chrI 88812 . A G 3848.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.11;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3848,441,0 chrI 89010 . T C 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=147;Dels=0.00;FS=3.965;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=1.355;QD=21.31;ReadPosRankSum=1.685;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3165,366,0 chrI 89060 . C T 3763.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.01;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3763,429,0 chrI 89266 . A C 3191 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=20.46;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3224,366,0 chrI 89268 . T C 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-1.427;QD=19.97;ReadPosRankSum=1.667;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3208,360,0 chrI 89334 . T C 2944 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=18.87;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2977,336,0 chrI 89430 . C T 3004 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=19.26;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3037,342,0 chrI 89433 . A G 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=159;Dels=0.00;FS=3.726;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;MQRankSum=-0.066;QD=18.06;ReadPosRankSum=1.688;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:2905,339,0 chrI 89472 . A G 2668 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=17.91;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2701,309,0 chrI 89484 . C G 2363 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=16.18;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2396,270,0 chrI 89494 . A G 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=149;Dels=0.00;FS=6.061;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;MQRankSum=-1.561;QD=15.70;ReadPosRankSum=2.926;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:2373,267,0 chrI 89561 . T C 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.175;DP=154;Dels=0.00;FS=3.020;HaplotypeScore=14.4957;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.881;QD=18.55;ReadPosRankSum=2.353;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:2,150:154:99:2889,330,0 chrI 89679 . T A 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=151;Dels=0.00;FS=3.030;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-0.350;QD=20.06;ReadPosRankSum=2.059;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3062,348,0 chrI 89705 . T C 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=151;Dels=0.00;FS=3.069;HaplotypeScore=6.7187;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=-0.300;QD=21.25;ReadPosRankSum=1.709;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3241,366,0 chrI 89805 . C T 3166 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.45;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3199,348,0 chrI 89979 . A G 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.789;QD=20.46;ReadPosRankSum=1.710;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3273,369,0 chrI 90064 . G T 2797 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2830,312,0 chrI 90330 . G T 2344 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2377,270,0 chrI 93464 . T A 4922.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.78;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4922,543,0 chrI 93789 . T A 5430.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=15.6443;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.11;SB=-3.044e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:5430,588,0 chrI 94472 . G A 2386 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.75;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2419,264,0 chrI 94811 . T C 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.269;DP=165;Dels=0.00;FS=14.129;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.118;QD=23.42;ReadPosRankSum=3.364;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:4,161:165:99:3865,444,0 chrI 96049 . G A 3739.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.52;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3739,405,0 chrI 99471 . A G 3664.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.1593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3664,420,0 chrI 106664 . T C 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.292;QD=22.71;ReadPosRankSum=1.714;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4473,507,0 chrI 107538 . G A 4465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.4176;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.875;QD=22.67;ReadPosRankSum=1.571;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:1,193:197:99:4465,492,0 chrI 108324 . C A 4660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=15.8813;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.409;QD=23.07;ReadPosRankSum=1.401;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4660,510,0 chrI 109735 . A G 5663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=252;Dels=0.00;FS=6.610;HaplotypeScore=22.5916;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.495;QD=22.47;ReadPosRankSum=2.411;SB=-2.953e+03 GT:AD:DP:GQ:PL 1/1:2,250:252:99:5663,639,0 chrI 111956 . C T 3592.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.0371;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.52;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3592,402,0 chrI 112136 . G T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.0331;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.96;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3513,399,0 chrI 112237 . C T 4391.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4391,480,0 chrI 113132 . A G 7564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=352;Dels=0.00;FS=8.648;HaplotypeScore=20.1481;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.066;QD=21.49;ReadPosRankSum=2.422;SB=-3.319e+03 GT:AD:DP:GQ:PL 1/1:2,349:352:99:7564,878,0 chrI 113207 . T C 5382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=265;Dels=0.00;FS=9.281;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.316;QD=20.31;ReadPosRankSum=2.951;SB=-3.283e+03 GT:AD:DP:GQ:PL 1/1:3,261:265:99:5382,609,0 chrI 113326 . C G 5798.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=20.7051;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=18.29;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:0,314:317:99:5798,663,0 chrI 114652 . C T 5684.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=20.9843;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=19.60;SB=-3.755e+03 GT:AD:DP:GQ:PL 1/1:0,289:290:99:5684,618,0 chrI 114824 . C T 6049.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=15.1878;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.84;SB=-3.348e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:6049,666,0 chrI 115974 . G A 4145.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4145,456,0 chrI 116327 . T C 6382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.362;DP=285;Dels=0.00;FS=8.992;HaplotypeScore=16.9531;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.596;QD=22.39;ReadPosRankSum=3.338;SB=-3.348e+03 GT:AD:DP:GQ:PL 1/1:4,278:285:99:6382,720,0 chrI 119344 . G A 3940.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=18.67;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:3940,444,0 chrI 119350 . A G 4099.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=20.09;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4099,468,0 chrI 119460 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2540,279,0 chrI 119659 . T G 767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=50;Dels=0.00;FS=5.643;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=1.496;QD=15.34;ReadPosRankSum=1.654;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:1,43:50:90:800,90,0 chrI 119920 . T C 2246 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.15;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2279,255,0 chrI 119951 . T C 2723 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5894;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.14;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2756,312,0 chrI 120281 . A G 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=3.278;HaplotypeScore=6.7025;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.620;QD=22.67;ReadPosRankSum=1.629;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3071,345,0 chrI 120320 . A G 2364 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.95;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2397,276,0 chrI 120347 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.74;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2664,297,0 chrI 120378 . G A 2500 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.53;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2533,279,0 chrI 124599 . T A 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.6885;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.006;QD=25.45;ReadPosRankSum=1.699;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2731,297,0 chrI 125812 . A G 2931 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.21;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2964,336,0 chrI 128704 . C A 4008.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.1844;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.65;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4008,447,0 chrI 129407 . C T 5113.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.2093;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.03;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5113,582,0 chrI 129476 . A G 5999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=273;Dels=0.00;FS=7.064;HaplotypeScore=19.6280;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.068;QD=21.97;ReadPosRankSum=2.304;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:2,268:273:99:5999,681,0 chrI 129517 . T C 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.272;DP=214;Dels=0.00;FS=8.947;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.938;QD=20.38;ReadPosRankSum=3.354;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:4,210:214:99:4362,498,0 chrI 129785 . C A 7856.01 PASS AC=2;AF=1.00;AN=2;DP=352;Dels=0.00;FS=0.000;HaplotypeScore=15.1541;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.32;SB=-4.340e+03 GT:AD:DP:GQ:PL 1/1:0,351:352:99:7856,873,0 chrI 129816 . C T 7700.01 PASS AC=2;AF=1.00;AN=2;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.00;SB=-4.178e+03 GT:AD:DP:GQ:PL 1/1:0,346:350:99:7700,841,0 chrI 130254 . T C 2466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=156;Dels=0.00;FS=6.105;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-0.357;QD=15.81;ReadPosRankSum=2.354;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:2499,282,0 chrI 130271 . C T 2115 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.5921;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=11.88;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:2148,240,0 chrI 130292 . C T 2269 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=12.07;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:2302,258,0 chrI 130362 . C T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.55;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3448,381,0 chrI 130648 . A C 1906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.02;FS=0.000;HaplotypeScore=18.6531;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.242;QD=20.06;ReadPosRankSum=1.695;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1939,222,0 chrI 130776 . C G 2476 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.14;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2509,285,0 chrI 130975 . G A 3777.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.17;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3777,414,0 chrI 131539 . C T 5744.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=15.5908;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.20;SB=-3.198e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:5744,627,0 chrI 131635 . T C 6261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=298;Dels=0.00;FS=3.069;HaplotypeScore=15.0291;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.772;QD=21.01;ReadPosRankSum=1.697;SB=-3.494e+03 GT:AD:DP:GQ:PL 1/1:1,295:298:99:6261,728,0 chrI 131980 . C T 1828 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.9276;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=15.62;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1861,198,0 chrI 132012 . C T 1306 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=14.20;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1339,150,0 chrI 132189 . A C 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=101;Dels=0.00;FS=5.485;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.207;QD=24.02;ReadPosRankSum=1.697;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2459,276,0 chrI 132243 . G A 1841 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.45;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1874,207,0 chrI 132423 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=145;Dels=0.00;FS=3.041;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.640;QD=22.61;ReadPosRankSum=2.347;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3278,366,0 chrI 132468 . T C 2802 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.1125;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.24;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2835,318,0 chrI 132618 . A G 4129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=4.747;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.476;QD=22.56;ReadPosRankSum=1.694;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4129,480,0 chrI 132723 . G A 4278.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.25;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4278,462,0 chrI 132831 . A G 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.025;QD=21.56;ReadPosRankSum=1.679;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4226,480,0 chrI 133080 . A G 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.703;QD=21.92;ReadPosRankSum=1.657;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3058,351,0 chrI 133134 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.93;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3269,366,0 chrI 133174 . G A 3948.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=15.6935;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=25.15;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3948,429,0 chrI 133346 . C T 3769.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.23;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3769,417,0 chrI 133347 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.52;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3648,414,0 chrI 133425 . G C 3357.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=15.26;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:3357,390,0 chrI 133429 . T G 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=209;Dels=0.00;FS=4.584;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.119;QD=16.54;ReadPosRankSum=1.715;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,203:209:99:3456,384,0 chrI 133470 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=18.29;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3032,336,0 chrI 133615 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=23.17;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2814,306,0 chrI 133640 . A G 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.966;QD=22.69;ReadPosRankSum=1.701;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2620,297,0 chrI 133749 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.98;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1731,189,0 chrI 133857 . G A 2620 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.48;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2653,291,0 chrI 134219 . C T 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.657;QD=24.42;ReadPosRankSum=-0.896;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2890,302,0 chrI 134475 . T C 2822 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.88;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2855,321,0 chrI 134587 . G A 2407 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.75;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2440,276,0 chrI 134604 . A G 2341 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=20.90;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2374,270,0 chrI 134639 . G A 2142 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.47;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2175,234,0 chrI 134661 . G A 1936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.938;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.652;QD=17.44;ReadPosRankSum=1.669;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1969,222,0 chrI 135181 . C T 2972 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.36;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3005,330,0 chrI 135222 . G A 3218.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3251,351,0 chrI 135325 . G C 2758 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.24;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2791,315,0 chrI 135353 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.97;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2801,297,0 chrI 135417 . T A 3180 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.34;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3213,348,0 chrI 135827 . G A 3102 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.05;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3135,333,0 chrI 135952 . C T 2441 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5917;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.23;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2474,279,0 chrI 136041 . G A 3125 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.26;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3158,351,0 chrI 136057 . A G 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.182;QD=18.39;ReadPosRankSum=1.709;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2829,318,0 chrI 136153 . C G 2545 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.88;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2578,294,0 chrI 136160 . C T 2658 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.60;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2691,297,0 chrI 136195 . C T 2563 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=18.85;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2596,294,0 chrI 136667 . G A 1833 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.56;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1866,201,0 chrI 136814 . T C 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=68;Dels=0.00;FS=2.579;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.829;QD=21.22;ReadPosRankSum=2.303;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:2,65:68:99:1476,165,0 chrI 136961 . T C 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.627;QD=24.40;ReadPosRankSum=1.708;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3441,390,0 chrI 137148 . C G 4255.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.4176;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.49;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4255,483,0 chrI 137167 . C A 4315.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.90;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4315,465,0 chrI 137237 . G A 3574.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.42;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3574,405,0 chrI 137264 . A G 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=178;Dels=0.00;FS=3.004;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.271;QD=22.13;ReadPosRankSum=2.394;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3939,438,0 chrI 137336 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.329;QD=22.69;ReadPosRankSum=1.711;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3721,414,0 chrI 138499 . G A 2224 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=12.4156;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.98;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2257,249,0 chrI 138591 . A G 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;MQRankSum=0.387;QD=21.65;ReadPosRankSum=2.331;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2718,303,0 chrI 138650 . A G 1388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.02;MQ0=0;MQRankSum=-1.526;QD=16.52;ReadPosRankSum=1.650;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1421,159,0 chrI 138655 . G A 1361 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.35;MQ0=0;QD=16.01;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1394,156,0 chrI 138666 . A G 1181 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=15.96;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1214,135,0 chrI 138667 . A G 1162 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=15.70;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1195,135,0 chrI 138668 . T G 1180 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=0;MQRankSum=-1.178;QD=15.73;ReadPosRankSum=1.686;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1213,135,0 chrI 138669 . T C 1151 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=77;Dels=0.00;FS=3.061;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.95;MQ0=0;MQRankSum=-1.970;QD=14.95;ReadPosRankSum=2.386;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1184,132,0 chrI 138770 . A G 1246 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.29;MQ0=0;QD=16.61;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1279,147,0 chrI 138780 . C T 1005 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=0;QD=13.40;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1038,117,0 chrI 138785 . C T 862 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.94;MQ0=0;QD=12.14;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:895,102,0 chrI 138791 . T C 697 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.40;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:84:730,84,0 chrI 138793 . T C 683 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.69;MQ0=0;QD=10.04;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:81:716,81,0 chrI 138806 . A T 557 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=31.62;MQ0=0;QD=7.63;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:69:590,69,0 chrI 138807 . G A 569 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=32.17;MQ0=0;QD=7.69;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:69:602,69,0 chrI 138823 . A G 554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;MQRankSum=0.091;QD=7.19;ReadPosRankSum=1.687;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:69:587,69,0 chrI 138824 . T C 563 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.20;MQ0=0;QD=7.41;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:69:596,69,0 chrI 139045 . C G 1948 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.6104;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=22.14;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1981,228,0 chrI 139073 . G A 1781 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=21.20;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1814,204,0 chrI 139123 . T C 761 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;QD=14.09;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:90:794,90,0 chrI 139132 . A T 750 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;QD=14.15;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:87:783,87,0 chrI 139199 . T A 1010 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=1;QD=19.80;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1043,111,0 chrI 139277 . T C 938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=8.709;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=0.866;QD=18.04;ReadPosRankSum=1.666;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:971,111,0 chrI 139311 . T C 677 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=15.74;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,40:43:81:710,81,0 chrI 139692 . G A 4375.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=21.66;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4375,501,0 chrI 140286 . A G 745.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.096;DP=244;Dels=0.00;FS=59.736;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=16.04;MQ0=106;MQRankSum=-1.141;QD=3.05;ReadPosRankSum=0.422;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,108:244:99:775,0,881 chrI 140397 . T C 323.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.734;DP=183;Dels=0.00;FS=10.536;HaplotypeScore=11.8302;MLEAC=1;MLEAF=0.500;MQ=31.18;MQ0=42;MQRankSum=-6.637;QD=1.77;ReadPosRankSum=-1.534;SB=-2.100e+02 GT:AD:DP:GQ:PL 0/1:124,58:183:99:353,0,1823 chrI 140418 . G A 695.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.802;DP=202;Dels=0.00;FS=4.648;HaplotypeScore=9.8695;MLEAC=1;MLEAF=0.500;MQ=31.15;MQ0=24;MQRankSum=-7.828;QD=3.44;ReadPosRankSum=-0.605;SB=-2.690e+02 GT:AD:DP:GQ:PL 0/1:128,73:202:99:725,0,2023 chrI 140451 . T C 2486.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.829;DP=268;Dels=0.00;FS=0.491;HaplotypeScore=20.0086;MLEAC=1;MLEAF=0.500;MQ=30.32;MQ0=2;MQRankSum=4.928;QD=9.28;ReadPosRankSum=0.599;SB=-9.190e+02 GT:AD:DP:GQ:PL 0/1:114,153:268:99:2516,0,1611 chrI 140526 . C T 872.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.970;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=19.1185;MLEAC=1;MLEAF=0.500;MQ=16.45;MQ0=144;MQRankSum=-2.186;QD=3.59;ReadPosRankSum=0.778;SB=-4.450e+02 GT:AD:DP:GQ:PL 0/1:116,123:243:99:902,0,760 chrI 140646 . G A 154.06 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.49;MQ0=43;QD=3.02;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,47:51:21:187,21,0 chrI 141030 . T A 2051 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=88;Dels=0.00;FS=14.367;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=29.06;MQ0=5;MQRankSum=-1.013;QD=23.31;ReadPosRankSum=1.482;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,84:88:99:2084,231,0 chrI 141135 . A T 3345.01 filter AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=29.13;MQ0=9;QD=19.91;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3345,375,0 chrI 141180 . G A 3978.01 filter AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=8;QD=16.24;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:3978,453,0 chrI 141184 . G C 4507.01 filter AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=38.14;MQ0=8;QD=18.25;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:4507,504,0 chrI 141342 . A G 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.514;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=17.4307;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=3;MQRankSum=1.233;QD=19.49;ReadPosRankSum=-1.045;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:4405,466,0 chrI 141802 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.58;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2584,291,0 chrI 141835 . A G 2058 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.39;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2091,237,0 chrI 141913 . C T 1729 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.20;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1762,189,0 chrI 141984 . T C 2633 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2666,303,0 chrI 143085 . T C 3103 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.1738;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.15;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3136,354,0 chrI 143622 . A G 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=1.237;QD=19.27;ReadPosRankSum=1.705;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2480,276,0 chrI 143638 . C A 2692 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.5351;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.55;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2725,300,0 chrI 143679 . G A 2531 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.9458;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.08;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:2564,294,0 chrI 143806 . T C 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.367;QD=23.60;ReadPosRankSum=1.687;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3587,405,0 chrI 143852 . T C 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.022;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.0301;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.374;QD=22.57;ReadPosRankSum=1.108;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:3193,338,0 chrI 144684 . T C 1822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.491;DP=106;Dels=0.00;FS=5.542;HaplotypeScore=12.4955;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.433;QD=17.19;ReadPosRankSum=2.933;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:3,102:106:99:1855,210,0 chrI 144826 . C G 2016 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.16;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2049,240,0 chrI 145634 . T C 1965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.032;QD=21.59;ReadPosRankSum=1.654;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,88:91:99:1998,231,0 chrI 145720 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2836,324,0 chrI 146738 . A G 2463 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2496,282,0 chrI 146820 . T C 2728 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2761,309,0 chrI 147726 . A G 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=104;Dels=0.00;FS=6.284;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.747;QD=22.41;ReadPosRankSum=1.698;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2364,264,0 chrI 147738 . C T 2428 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.48;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2461,276,0 chrI 147785 . C G 2557 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.4088;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.79;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2590,288,0 chrI 149307 . T C 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=138;Dels=0.00;FS=6.310;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.686;QD=19.46;ReadPosRankSum=2.271;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2718,312,0 chrI 149467 . C T 2504 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2537,273,0 chrI 149590 . G T 2678 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.09;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2711,291,0 chrI 149773 . C T 1885 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1918,213,0 chrI 150303 . G A 2022 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.82;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2055,228,0 chrI 150921 . G A 2576 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.66;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2609,294,0 chrI 151010 . C T 2683 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.30;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2716,303,0 chrI 151332 . A C 1152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.204;QD=19.53;ReadPosRankSum=1.674;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1185,135,0 chrI 151450 . A T 157.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=14.28;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:190,21,0 chrI 151453 . G A 212.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=19.27;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:27:245,27,0 chrI 151460 . G C 175.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.45;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:24:208,24,0 chrI 151465 . G A 148.06 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.45;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:21:181,21,0 chrI 151475 . A G 97.26 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.89;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:130,15,0 chrI 151478 . A G 118.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.88;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,7:7:18:151,18,0 chrI 151483 . A T 75.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.736;QD=12.59;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,5:6:12:108,12,0 chrI 151501 . A T 50.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.727;QD=12.74;ReadPosRankSum=0.727;SB=-2.721e+01 GT:AD:DP:GQ:PL 1/1:1,3:4:9:83,9,0 chrI 151502 . A T 52.97 SnpCluster AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.66;SB=-2.821e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:85,9,0 chrI 151503 . A T 51.97 SnpCluster AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.32;SB=-2.821e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:84,9,0 chrI 151511 . T A 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.32;SB=-2.421e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:81,9,0 chrI 151521 . T C 49.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.66;SB=-2.721e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:82,9,0 chrI 151658 . G C 1064 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1097,123,0 chrI 151740 . T C 995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.956;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.025;QD=19.90;ReadPosRankSum=2.352;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:99:1028,114,0 chrI 151834 . C A 1926 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.27;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1959,222,0 chrI 151963 . T A 1428 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.03;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1461,156,0 chrI 152004 . A G 1312 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.83;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1345,153,0 chrI 152155 . A G 1513 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.58;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1546,174,0 chrI 152235 . G A 1699 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=20.72;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1732,189,0 chrI 152239 . T C 1526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.855;QD=19.32;ReadPosRankSum=1.644;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1559,177,0 chrI 152274 . G A 1226 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=14.77;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1259,147,0 chrI 152291 . C T 1580 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=16.29;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1613,180,0 chrI 152336 . A G 2791 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.14;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2824,321,0 chrI 152709 . A G 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=6.434;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.858;QD=21.06;ReadPosRankSum=2.408;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2539,288,0 chrI 152728 . G A 2751 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.37;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2784,303,0 chrI 152932 . A G 4072.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.7429;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.24;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4072,456,0 chrI 152970 . C T 4384.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.95;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4384,486,0 chrI 153156 . A T 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.737;QD=21.16;ReadPosRankSum=1.692;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3766,420,0 chrI 153742 . T C 3862.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=23.13;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3862,429,0 chrI 153762 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.044;QD=20.46;ReadPosRankSum=1.666;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3266,372,0 chrI 154086 . A G 1870 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.67;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1903,222,0 chrI 154332 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.00;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3162,363,0 chrI 154746 . C T 2264 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2297,243,0 chrI 155562 . T G 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=3.563;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.011;QD=20.53;ReadPosRankSum=1.667;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3285,375,0 chrI 156174 . T G 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=173;Dels=0.00;FS=4.362;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-1.470;QD=21.43;ReadPosRankSum=1.591;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3708,426,0 chrI 156314 . T C 3088 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=20.72;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,145:149:99:3121,357,0 chrI 156315 . A G 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;MQRankSum=-1.445;QD=21.13;ReadPosRankSum=1.708;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3118,357,0 chrI 156383 . T G 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=113;Dels=0.00;FS=3.590;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=0;MQRankSum=1.701;QD=16.20;ReadPosRankSum=1.701;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:1864,216,0 chrI 156393 . G T 1485 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;QD=15.63;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1518,177,0 chrI 156394 . G A 1566 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;QD=16.48;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1599,183,0 chrI 156403 . T C 1793 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;QD=15.59;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1826,213,0 chrI 156518 . T C 2066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=6.747;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;MQRankSum=-1.044;QD=17.36;ReadPosRankSum=2.408;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2099,243,0 chrI 156538 . T C 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=6.515;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;MQRankSum=-1.491;QD=17.69;ReadPosRankSum=2.408;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2121,240,0 chrI 156554 . C A 2046 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=18.60;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2079,231,0 chrI 156584 . T C 2011 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=19.15;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2044,234,0 chrI 156614 . T A 2120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.203;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;MQRankSum=-1.732;QD=18.43;ReadPosRankSum=1.702;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2153,246,0 chrI 156615 . C T 2070 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=18.00;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2103,246,0 chrI 156651 . A G 2037 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=15.09;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2070,240,0 chrI 156666 . G A 1817 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=13.56;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,129:134:99:1850,216,0 chrI 156835 . G A 2940 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=13.3214;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=22.44;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2973,333,0 chrI 156949 . T C 4408.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.61;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4408,498,0 chrI 157114 . A G 3318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=0.745;QD=20.87;ReadPosRankSum=1.688;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3318,375,0 chrI 157134 . G A 3380.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.5105;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.48;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3380,366,0 chrI 157339 . C T 2118 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=18.58;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2151,234,0 chrI 157344 . A G 1996 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=17.66;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2029,234,0 chrI 157428 . G A 2930 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.20;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2963,327,0 chrI 157912 . C G 2990 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.62;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3023,348,0 chrI 157927 . T A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.88;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3347,378,0 chrI 158089 . A G 2811 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.79;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2844,318,0 chrI 158200 . A G 3225.28 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.94;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3258,372,0 chrI 158341 . T C 2968 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.8660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.05;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3001,339,0 chrI 158503 . C T 3127 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.27;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3160,348,0 chrI 158597 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.10;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3789,417,0 chrI 158641 . C T 3172 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.73;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3205,357,0 chrI 158733 . A T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.44;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3328,360,0 chrI 158824 . G C 2697 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=18.73;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2730,309,0 chrI 158827 . G A 2626 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=18.11;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2659,291,0 chrI 158870 . T C 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-0.691;QD=19.02;ReadPosRankSum=1.690;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3171,357,0 chrI 158971 . A G 3607.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.58;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3607,411,0 chrI 159164 . G C 3555.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.94;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3555,405,0 chrI 159467 . G A 4573.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4573,525,0 chrI 166091 . A T 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.53;MQ0=5;QD=1.61;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:5,21:26:9:74,9,0 chrI 166095 . C T 51.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=5;QD=1.57;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:5,28:33:9:84,9,0 chrI 166097 . G A 50.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=4;QD=1.59;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:4,28:32:9:83,9,0 chrI 166111 . A G 127.13 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.15;MQ0=2;QD=3.18;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:2,38:40:18:160,18,0 chrI 166116 . T C 133.13 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=3.50;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:18:166,18,0 chrI 166118 . A G 133.13 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=3.50;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:18:166,18,0 chrI 166120 . G T 125.13 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=3.29;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:18:158,18,0 chrI 166122 . A T 133.13 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=3.50;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:18:166,18,0 chrI 166128 . T A 129.13 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=3.40;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:18:162,18,0 chrI 166130 . G A 132.13 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=3.48;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:18:165,18,0 chrI 166133 . A G 131.13 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=3.45;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:18:164,18,0 chrI 166134 . G A 142.13 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=3.74;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:18:175,18,0 chrI 166136 . A C 135.13 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=3.56;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:18:168,18,0 chrI 166139 . T A 133.13 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=3.50;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:18:166,18,0 chrI 166369 . T C 3385.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.8402;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=20.39;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3385,381,0 chrI 166416 . T C 4465.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.1392;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.86;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4465,495,0 chrI 167636 . C G 6316.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=12.3801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:6316,711,0 chrI 168197 . A G 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=3.286;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.358;QD=19.73;ReadPosRankSum=1.713;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3532,405,0 chrI 168686 . G A 3086 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.2857;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.99;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3119,354,0 chrI 168767 . G T 3482.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=17.95;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3482,402,0 chrI 168772 . G A 3627.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=17.52;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3627,390,0 chrI 168787 . C A 3413.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.8960;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=16.41;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3413,381,0 chrI 168836 . G A 3065 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=16.66;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3098,345,0 chrI 169205 . C T 761 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=15.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:84:794,84,0 chrI 169217 . T C 487 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=13.91;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,34:35:60:520,60,0 chrI 169243 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=1.78;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,9:10:6:49,6,0 chrI 169269 . T C 1643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.922;QD=21.34;ReadPosRankSum=1.687;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1676,189,0 chrI 169422 . C T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.23;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3355,381,0 chrI 169476 . T C 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.247;DP=159;Dels=0.00;FS=5.434;HaplotypeScore=3.5573;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.146;QD=22.45;ReadPosRankSum=2.880;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:3569,383,0 chrI 169638 . T C 4829.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.46;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4829,540,0 chrI 169689 . C T 4832.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.27;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4832,537,0 chrI 169830 . A G 4533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=207;Dels=0.00;FS=3.666;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.661;QD=21.90;ReadPosRankSum=1.699;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4533,507,0 chrI 169887 . C T 5172.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.3230;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.49;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5172,564,0 chrI 169992 . T C 4560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=215;Dels=0.00;FS=5.222;HaplotypeScore=16.1445;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.155;QD=21.21;ReadPosRankSum=1.700;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,212:215:99:4560,522,0 chrI 170022 . T C 3990.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.11;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3990,453,0 chrI 170311 . C G 3111 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.04;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3144,354,0 chrI 170564 . G A 1866 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.1783;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.77;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1899,210,0 chrI 171133 . T C 3339.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=16.9530;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.11;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3339,384,0 chrI 171200 . G A 2307 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.89;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2340,264,0 chrI 171389 . A G 2740 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.8558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2773,315,0 chrI 171685 . A G 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.157;QD=20.58;ReadPosRankSum=1.706;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2791,315,0 chrI 171975 . A G 1838 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.7485;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.20;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1871,210,0 chrI 172113 . C A 1779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.866;QD=23.41;ReadPosRankSum=0.866;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1812,198,0 chrI 172129 . A T 1428 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.64;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1461,162,0 chrI 172431 . A T 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=4.082;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.541;QD=23.44;ReadPosRankSum=1.705;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3033,336,0 chrI 172585 . A T 2439 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2472,276,0 chrI 173222 . A C 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=3.545;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.778;QD=22.92;ReadPosRankSum=0.929;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3219,369,0 chrI 173339 . G A 3160 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.94;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3193,348,0 chrI 173831 . A G 2907 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.3126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2940,336,0 chrI 174118 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.39;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3807,420,0 chrI 174371 . T C 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=179;Dels=0.00;FS=6.394;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.611;QD=22.04;ReadPosRankSum=2.422;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3945,444,0 chrI 174746 . T G 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=161;Dels=0.00;FS=5.509;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.281;QD=18.66;ReadPosRankSum=1.710;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3037,339,0 chrI 174919 . A G 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=136;Dels=0.00;FS=8.041;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-1.248;QD=22.42;ReadPosRankSum=2.413;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:2,131:136:99:3082,348,0 chrI 174938 . G A 3297.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.98;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3297,369,0 chrI 175281 . G A 4820.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.6565;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:4820,528,0 chrI 175315 . G A 4504.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4504,495,0 chrI 176230 . T C 1813 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.38;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1846,210,0 chrI 176266 . A T 1013 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=15.58;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1046,114,0 chrI 176273 . A G 909 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=17.48;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:942,108,0 chrI 176512 . T A 187.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.107;DP=12;Dels=0.00;FS=5.643;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;MQRankSum=0.791;QD=15.59;ReadPosRankSum=1.423;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:24:220,24,0 chrI 176650 . G A 2800 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=25.69;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2833,306,0 chrI 176694 . A G 1776 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=8;QD=21.66;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1809,210,0 chrI 176721 . G A 1491 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=10;QD=17.96;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1524,177,0 chrI 176847 . G A 4409.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=22.16;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4409,483,0 chrI 176858 . A G 4131.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=19.86;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4131,474,0 chrI 176948 . A G 3405.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=156;Dels=0.00;FS=3.670;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=7;MQRankSum=1.011;QD=21.83;ReadPosRankSum=1.686;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3405,381,0 chrI 177137 . C A 2363 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=14.68;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:2396,261,0 chrI 177140 . T G 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.728;DP=160;Dels=0.00;FS=5.954;HaplotypeScore=4.2945;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=0.943;QD=14.15;ReadPosRankSum=2.918;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:3,156:160:99:2297,264,0 chrI 177196 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.7893;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=19.42;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3282,357,0 chrI 177241 . C T 3418.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.05;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3418,378,0 chrI 177270 . G A 3277.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=19.39;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3277,363,0 chrI 177285 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=178;Dels=0.00;FS=3.931;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.681;QD=19.29;ReadPosRankSum=1.713;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3433,390,0 chrI 177604 . C T 4476.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.3408;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.07;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4476,492,0 chrI 177667 . T C 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=151;Dels=0.00;FS=3.027;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.077;QD=20.87;ReadPosRankSum=2.398;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:2,142:151:99:3185,357,0 chrI 177692 . A G 2597 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.61;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2630,297,0 chrI 178191 . A T 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.504;QD=19.99;ReadPosRankSum=1.709;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3112,354,0 chrI 178602 . G C 2883 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.45;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2916,327,0 chrI 178654 . G A 2223 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.85;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2256,240,0 chrI 178674 . G A 1696 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=15.70;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1729,195,0 chrI 178682 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=16.40;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2017,225,0 chrI 178802 . A G 3499.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.1677;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.73;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3499,396,0 chrI 178875 . G C 2994 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.51;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,140:146:99:3027,357,0 chrI 178905 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.56;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3888,420,0 chrI 178989 . A G 3068 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=21.31;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3101,354,0 chrI 179014 . A G 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=-0.309;QD=20.48;ReadPosRankSum=1.705;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2696,306,0 chrI 179051 . A G 2187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-0.887;QD=17.64;ReadPosRankSum=1.450;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2220,252,0 chrI 179052 . A G 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=122;Dels=0.00;FS=2.744;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-2.265;QD=17.26;ReadPosRankSum=2.306;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:2,118:122:99:2139,240,0 chrI 179221 . A G 2210 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=76.3541;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.65;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2243,261,0 chrI 179397 . A G 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=121;Dels=0.00;FS=6.281;HaplotypeScore=13.7712;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.506;QD=17.47;ReadPosRankSum=2.202;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:2,117:121:99:2147,240,0 chrI 179578 . G A 3271.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.10;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:3271,369,0 chrI 179772 . T C 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=156;Dels=0.00;FS=6.163;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-0.104;QD=20.39;ReadPosRankSum=2.274;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3214,366,0 chrI 179796 . A C 3819.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.70;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3819,432,0 chrI 179942 . C T 2922 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=9.7744;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=18.49;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2955,321,0 chrI 179951 . A G 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.738;DP=151;Dels=0.01;FS=7.851;HaplotypeScore=12.3139;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;MQRankSum=-1.937;QD=17.32;ReadPosRankSum=3.696;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:5,145:150:99:2649,300,0 chrI 179996 . A G 1891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;MQRankSum=-0.417;QD=16.30;ReadPosRankSum=2.300;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:2,113:116:99:1924,216,0 chrI 180069 . A G 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=153;Dels=0.00;FS=2.884;HaplotypeScore=10.3215;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-1.406;QD=19.77;ReadPosRankSum=2.417;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3058,342,0 chrI 180103 . T C 1820 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=15.04;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,115:121:99:1853,207,0 chrI 180134 . C T 1584 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=382.6679;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;QD=14.27;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1617,177,0 chrI 180177 . A G 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=3.532;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;MQRankSum=-1.144;QD=13.59;ReadPosRankSum=1.699;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:1487,171,0 chrI 180231 . A G 1399 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;QD=14.42;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1432,162,0 chrI 180286 . A G 115.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=115;Dels=0.00;FS=6.214;HaplotypeScore=100.4222;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;MQRankSum=-1.630;QD=1.00;ReadPosRankSum=2.407;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:18:148,18,0 chrI 180393 . G A 3678.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=23.13;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3678,408,0 chrI 180592 . A G 2971 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.7953;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=22.34;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3004,342,0 chrI 180646 . C T 2305 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=18.74;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2338,255,0 chrI 180652 . A C 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;MQRankSum=0.377;QD=17.75;ReadPosRankSum=1.702;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2074,237,0 chrI 180697 . A G 2033 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.15;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2066,231,0 chrI 180726 . G C 2033 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.9855;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=19.00;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2066,240,0 chrI 180747 . A G 1825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-0.640;QD=19.84;ReadPosRankSum=1.694;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1858,207,0 chrI 180787 . C T 1083 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;QD=15.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1116,123,0 chrI 180794 . T A 845 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=15.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:878,99,0 chrI 181013 . T C 2248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=2.617;HaplotypeScore=12.0311;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;MQRankSum=-1.659;QD=20.62;ReadPosRankSum=2.405;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2281,255,0 chrI 181117 . G A 2551 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=20.74;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2584,291,0 chrI 181118 . T C 2603 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=-0.698;QD=20.99;ReadPosRankSum=1.704;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2636,300,0 chrI 181119 . G A 2658 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=21.26;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2691,303,0 chrI 181197 . G T 2872 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=20.66;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2905,330,0 chrI 181589 . G A 4180.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.59;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4180,474,0 chrI 181752 . G C 3153 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.60;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3186,354,0 chrI 181824 . G A 2673 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=16.6403;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.25;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2706,303,0 chrI 182045 . A G 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=4.732;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-1.701;QD=23.25;ReadPosRankSum=1.701;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2590,294,0 chrI 182093 . C T 2517 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.27;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2550,291,0 chrI 182141 . G T 3019 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.04;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3052,339,0 chrI 182201 . C T 3019 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=22.04;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3052,330,0 chrI 182210 . T A 2955 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=21.11;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2988,324,0 chrI 182240 . T C 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=6.435;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=0.834;QD=18.74;ReadPosRankSum=2.415;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:2675,312,0 chrI 182259 . G A 2549 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=20.23;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2582,285,0 chrI 182380 . G A 3092 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=21.93;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3125,348,0 chrI 182447 . T A 2445 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=20.90;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2478,282,0 chrI 182496 . G A 1702 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7052;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=17.73;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1735,198,0 chrI 182519 . T C 1738 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=2;QD=19.98;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1771,204,0 chrI 182605 . A T 1066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.1003;MLEAC=2;MLEAF=1.00;MQ=33.74;MQ0=1;MQRankSum=-1.501;QD=17.19;ReadPosRankSum=1.675;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1099,123,0 chrI 182616 . T C 849 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=0;QD=16.98;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,49:50:99:882,102,0 chrI 183100 . G A 1238 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;QD=20.98;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1271,144,0 chrI 183101 . A G 1208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=3.074;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;MQRankSum=-1.068;QD=20.47;ReadPosRankSum=2.283;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1241,144,0 chrI 183214 . G A 998 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=2;QD=18.48;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1031,114,0 chrI 183270 . T C 1358 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=4;QD=19.13;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1391,156,0 chrI 183311 . G A 450 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.04;MQ0=7;QD=10.47;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:57:483,57,0 chrI 183331 . G T 206 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.53;MQ0=5;QD=8.58;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,23:24:30:239,30,0 chrI 183353 . C T 96.26 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.57;MQ0=3;QD=6.88;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:129,15,0 chrI 183400 . T C 52.97 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.73;MQ0=2;QD=6.62;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:85,9,0 chrI 183401 . T C 52.97 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.73;MQ0=2;QD=6.62;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:85,9,0 chrI 183404 . G A 103.26 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.04;MQ0=2;QD=9.39;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:15:136,15,0 chrI 183432 . C A 483 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=3;QD=16.66;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:57:516,57,0 chrI 183545 . C T 410 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=5;QD=10.00;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:51:443,51,0 chrI 183590 . A G 280 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=7.37;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:36:313,36,0 chrI 183591 . C G 286 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=7.53;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:36:319,36,0 chrI 183596 . C T 288 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=0;QD=7.02;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:36:321,36,0 chrI 183650 . G A 651 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.8691;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=8.80;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:78:684,78,0 chrI 183881 . T C 2466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=137;Dels=0.00;FS=3.238;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-0.089;QD=18.00;ReadPosRankSum=1.656;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2499,285,0 chrI 184083 . T C 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.158;QD=21.04;ReadPosRankSum=1.714;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,186:190:99:3997,456,0 chrI 184235 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=3.354;HaplotypeScore=5.3169;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=-1.732;QD=22.24;ReadPosRankSum=1.023;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3826,432,0 chrI 184256 . A G 3918.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.73;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3918,447,0 chrI 184334 . G A 3196 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=16.4822;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.89;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3229,354,0 chrI 184418 . C A 2449 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=20.07;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2482,282,0 chrI 184422 . A T 2295 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=18.51;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2328,261,0 chrI 184481 . C A 1965 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.62;MQ0=0;QD=16.65;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1998,228,0 chrI 184488 . T C 1738 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.52;MQ0=0;QD=14.36;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:1771,198,0 chrI 184492 . T C 1641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.11;MQ0=0;MQRankSum=-0.527;QD=14.27;ReadPosRankSum=1.672;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1674,192,0 chrI 184510 . T C 2071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=130;Dels=0.00;FS=6.059;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;MQRankSum=0.227;QD=15.93;ReadPosRankSum=2.946;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:3,126:130:99:2104,240,0 chrI 184921 . A T 5134.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.75;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5134,582,0 chrI 185150 . A G 3810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.090;DP=193;Dels=0.00;FS=4.320;HaplotypeScore=8.8358;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-1.263;QD=19.74;ReadPosRankSum=-1.552;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:3810,414,0 chrI 185159 . A G 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.1214;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=0.484;QD=20.48;ReadPosRankSum=1.713;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3829,435,0 chrI 185480 . T G 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.100;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.4064;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.693;QD=20.62;ReadPosRankSum=0.915;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2796,294,0 chrI 185879 . G A 2790 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.1951;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=22.68;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2823,309,0 chrI 186098 . T A 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=156;Dels=0.00;FS=2.857;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;MQRankSum=-0.859;QD=17.16;ReadPosRankSum=2.371;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:2710,294,0 chrI 186099 . G A 2619 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;QD=17.01;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2652,291,0 chrI 186131 . A G 1948 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;QD=13.25;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:1981,222,0 chrI 186139 . C T 1790 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;QD=12.26;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:1823,195,0 chrI 186146 . T G 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-1.206;QD=11.76;ReadPosRankSum=1.637;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:1738,195,0 chrI 186256 . T C 3131 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.82;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3164,360,0 chrI 186291 . A G 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.688;DP=153;Dels=0.00;FS=7.548;HaplotypeScore=15.1878;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=-0.021;QD=18.26;ReadPosRankSum=3.781;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:5,147:153:99:2827,315,0 chrI 186440 . A T 3033 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.63;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3066,345,0 chrI 186504 . G C 2072 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=16.06;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2105,237,0 chrI 186505 . A C 2026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=4.082;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;MQRankSum=-1.434;QD=15.71;ReadPosRankSum=1.705;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2059,231,0 chrI 186596 . G A 4057.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=9.7880;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=25.36;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:4057,432,0 chrI 186619 . C A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;QD=23.18;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4010,450,0 chrI 186714 . C T 4025.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=22.49;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4025,447,0 chrI 186754 . G A 3772.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=12.5415;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=21.68;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3772,426,0 chrI 186807 . C T 3172 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;QD=18.66;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3205,357,0 chrI 186819 . T C 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=3.590;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-1.417;QD=16.09;ReadPosRankSum=1.712;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:2865,333,0 chrI 186841 . G A 2487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.605;DP=164;Dels=0.00;FS=3.671;HaplotypeScore=149.0833;MLEAC=2;MLEAF=1.00;MQ=36.96;MQ0=0;MQRankSum=-1.456;QD=15.16;ReadPosRankSum=-0.478;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:2520,258,0 chrI 186857 . T C 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=166;Dels=0.00;FS=10.987;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=38.76;MQ0=0;MQRankSum=-2.109;QD=11.99;ReadPosRankSum=2.812;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:2024,231,0 chrI 186907 . T C 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;MQRankSum=-0.012;QD=16.30;ReadPosRankSum=1.707;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2299,261,0 chrI 186936 . G A 2310 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=16.15;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2343,270,0 chrI 186963 . C A 2018 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.27;MQ0=0;QD=15.06;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2051,234,0 chrI 186974 . C T 1884 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;QD=13.75;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1917,213,0 chrI 186987 . G A 1857 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=13.36;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1890,213,0 chrI 186990 . G C 1801 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;QD=13.24;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:1834,210,0 chrI 187062 . T C 2127 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=18.50;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2160,246,0 chrI 187280 . C G 2746 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;QD=21.97;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2779,315,0 chrI 187411 . C T 1015 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.79;MQ0=0;QD=18.45;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1048,120,0 chrI 187414 . G T 957 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=17.40;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:990,114,0 chrI 187420 . C T 915 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.27;MQ0=0;QD=19.06;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:948,102,0 chrI 187422 . A G 885 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.42;MQ0=0;MQRankSum=0.416;QD=17.70;ReadPosRankSum=1.525;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,49:50:99:918,105,0 chrI 187426 . T C 867 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=12.218;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.63;MQ0=0;MQRankSum=1.317;QD=17.34;ReadPosRankSum=1.663;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,49:50:99:900,102,0 chrI 187427 . T A 898 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.63;MQ0=0;QD=17.96;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:931,102,0 chrI 187515 . G A 1618 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.68;MQ0=0;QD=15.41;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1651,189,0 chrI 187524 . A G 1424 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=29.09;MQ0=0;QD=14.10;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1457,168,0 chrI 187528 . G A 976 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=13.37;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1009,114,0 chrI 187530 . A C 934 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;MQRankSum=-0.024;QD=12.79;ReadPosRankSum=1.590;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:967,111,0 chrI 187532 . A G 968 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=0;QD=13.83;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1001,111,0 chrI 187535 . G A 980 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=14.20;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1013,111,0 chrI 187537 . A G 923 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=13.38;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:956,111,0 chrI 187539 . C T 949 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=13.75;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:982,111,0 chrI 187555 . T G 789 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=0;QD=9.51;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:90:822,90,0 chrI 187557 . A T 792 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=0;MQRankSum=0.730;QD=9.54;ReadPosRankSum=1.690;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:93:825,93,0 chrI 187558 . A G 781 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=9.52;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:93:814,93,0 chrI 187561 . C T 778 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=9.49;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:93:811,93,0 chrI 187563 . C G 799 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=9.74;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:93:832,93,0 chrI 187568 . T C 766 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=9.34;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:93:799,93,0 chrI 187569 . C G 807 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=9.84;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:93:840,93,0 chrI 187681 . T C 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=0.25;SB=-5.377e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:6:50,6,0 chrI 187685 . A G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=0.21;SB=-9.077e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:6:48,6,0 chrI 187687 . G C 84.26 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;QD=0.99;SB=-1.803e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:15:117,15,0 chrI 187705 . G A 524 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=33.78;MQ0=0;QD=5.19;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:63:557,63,0 chrI 187734 . C T 821 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=8.21;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:854,99,0 chrI 187768 . A G 1718 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;QD=14.81;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1751,207,0 chrI 187795 . T C 1456 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.04;FS=0.000;HaplotypeScore=6.8337;MLEAC=2;MLEAF=1.00;MQ=38.96;MQ0=0;QD=13.24;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1489,171,0 chrI 187797 . C A 1472 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.018;DP=109;Dels=0.00;FS=5.311;HaplotypeScore=4.7229;MLEAC=2;MLEAF=1.00;MQ=39.36;MQ0=0;MQRankSum=-0.496;QD=13.50;ReadPosRankSum=2.465;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:4,104:109:99:1505,171,0 chrI 187801 . T C 1462 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.074;DP=116;Dels=0.00;FS=8.098;HaplotypeScore=3.7362;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;MQRankSum=-2.719;QD=12.60;ReadPosRankSum=3.630;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:5,111:116:99:1495,174,0 chrI 188057 . A G 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=3.261;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;MQRankSum=1.150;QD=23.26;ReadPosRankSum=1.704;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2941,330,0 chrI 188063 . C T 2806 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=23.38;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2839,303,0 chrI 188086 . A G 2612 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=21.41;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2645,306,0 chrI 188151 . T C 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=5.798;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;MQRankSum=-0.122;QD=21.11;ReadPosRankSum=1.641;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2439,276,0 chrI 188190 . T C 1980 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=34.71;MQ0=0;QD=21.06;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2013,225,0 chrI 188347 . T C 2410 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=24.34;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2443,273,0 chrI 188386 . A G 2049 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=4;QD=22.03;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2082,234,0 chrI 188466 . G A 134.13 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.36;MQ0=32;QD=3.35;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,39:40:18:167,18,0 chrI 188549 . A G 2029 filter AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.4380;MLEAC=2;MLEAF=1.00;MQ=22.40;MQ0=25;QD=11.40;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,174:178:99:2062,237,0 chrI 188558 . G A 2290 filter AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=22.36;MQ0=25;QD=11.93;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,188:192:99:2323,261,0 chrI 188881 . G C 2974 filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=7;QD=20.09;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3007,342,0 chrI 188939 . A G 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=22.2330;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;MQRankSum=-0.545;QD=19.94;ReadPosRankSum=1.652;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:1,215:219:99:4367,501,0 chrI 189066 . T C 797 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=1;QD=12.65;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:93:830,93,0 chrI 189123 . C T 1639 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=0;QD=19.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1672,186,0 chrI 189292 . G A 100.26 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.46;MQ0=1;QD=14.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:15:133,15,0 chrI 189416 . T C 150.06 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=3;QD=10.72;SB=-7.781e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:21:183,21,0 chrI 189492 . G A 92.26 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.51;MQ0=5;QD=5.43;SB=-4.730e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:15:125,15,0 chrI 189636 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=17.11;MQ0=2;MQRankSum=0.736;QD=2.72;ReadPosRankSum=0.736;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,7:8:6:53,6,0 chrI 189665 . C A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.73;MQ0=0;MQRankSum=0.742;QD=3.40;ReadPosRankSum=0.742;SB=-4.680e+01 GT:AD:DP:GQ:PL 1/1:1,6:7:6:55,6,0 chrI 189669 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.45;MQ0=0;MQRankSum=0.747;QD=2.60;ReadPosRankSum=0.747;SB=-5.480e+01 GT:AD:DP:GQ:PL 1/1:1,7:8:6:52,6,0 chrI 189688 . A G 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=2.97;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:52,6,0 chrI 189689 . C T 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=2.97;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:52,6,0 chrI 189690 . G A 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=2.97;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:52,6,0 chrI 189704 . T A 46.97 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=2.61;SB=-2.298e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:9:79,9,0 chrI 189735 . T C 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=1.95;SB=-2.298e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:75,9,0 chrI 189736 . C A 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=2.04;SB=-2.298e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:77,9,0 chrI 189740 . A G 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=2.09;SB=-2.298e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:78,9,0 chrI 189855 . T C 665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.93;MQ0=0;MQRankSum=-2.214;QD=7.07;ReadPosRankSum=2.397;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:78:698,78,0 chrI 189876 . A G 810 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;QD=8.27;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:96:843,96,0 chrI 189986 . G A 343 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=5.44;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:45:376,45,0 chrI 189989 . C A 479 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.32;MQ0=0;QD=6.65;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:60:512,60,0 chrI 190025 . C T 1651 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=13.31;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1684,189,0 chrI 190031 . G A 1891 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=0;QD=13.60;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:1924,219,0 chrI 191617 . T C 6158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.393;DP=333;Dels=0.00;FS=9.102;HaplotypeScore=21.6853;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.321;QD=18.49;ReadPosRankSum=3.409;SB=-4.112e+03 GT:AD:DP:GQ:PL 1/1:4,326:333:99:6158,684,0 chrI 191704 . G C 5169.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=24.5271;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=17.95;SB=-3.502e+03 GT:AD:DP:GQ:PL 1/1:0,287:288:99:5169,591,0 chrI 192073 . G A 4450.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=16.98;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:4450,492,0 chrI 192139 . G A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=17.40;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3359,369,0 chrI 192169 . G A 2858 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=17.53;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2891,318,0 chrI 192170 . A G 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=-0.414;QD=17.37;ReadPosRankSum=1.605;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:1,162:164:99:2881,321,0 chrI 192196 . A G 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=1.012;QD=15.75;ReadPosRankSum=1.674;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:1,177:178:99:2837,318,0 chrI 192427 . T C 444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=3.522;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=-0.578;QD=16.44;ReadPosRankSum=1.605;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:54:477,54,0 chrI 192429 . G C 415 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=14.82;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:51:448,51,0 chrI 192469 . G A 659 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=16.90;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:75:692,75,0 chrI 192531 . C T 406 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=15.04;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:48:439,48,0 chrI 192551 . C A 75.51 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.04;FS=0.000;HaplotypeScore=9.5409;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;QD=3.28;SB=-1.565e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:12:108,12,0 chrI 192566 . T A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;DP=52;Dels=0.00;FS=1.412;HaplotypeScore=12.7634;MLEAC=1;MLEAF=0.500;MQ=48.99;MQ0=0;MQRankSum=-3.884;QD=0.50;ReadPosRankSum=0.743;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:32,20:52:56:56,0,316 chrI 192618 . C T 3000 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2669;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.19;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3033,339,0 chrI 192693 . C T 2309 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.56;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2342,261,0 chrI 192954 . C A 5973.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=14.8193;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.33;SB=-3.547e+03 GT:AD:DP:GQ:PL 1/1:0,306:309:99:5973,684,0 chrI 193260 . T C 5252.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=252;Dels=0.00;FS=3.315;HaplotypeScore=14.3234;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.332;QD=20.84;ReadPosRankSum=1.691;SB=-2.882e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:5252,588,0 chrI 193452 . G A 4520.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=21.5829;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.64;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4520,516,0 chrI 193500 . C T 4228.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.14;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4228,471,0 chrI 194101 . A G 2225 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=17.52;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2258,261,0 chrI 194104 . C T 2211 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=17.27;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2244,252,0 chrI 194166 . T C 1518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=0.444;QD=14.06;ReadPosRankSum=2.359;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:2,106:108:99:1551,177,0 chrI 194169 . T C 1582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=-0.417;QD=13.64;ReadPosRankSum=2.940;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:3,113:116:99:1615,183,0 chrI 194241 . C T 3445.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.08;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3445,381,0 chrI 194290 . C A 4675.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.1974;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.80;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4675,519,0 chrI 194475 . C T 2590 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.0580;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.08;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2623,300,0 chrI 194499 . T A 3098 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.79;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3131,348,0 chrI 194626 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.2909;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.14;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2902,309,0 chrI 194700 . C T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.83;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3448,378,0 chrI 195459 . T C 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=3.751;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.571;QD=21.92;ReadPosRankSum=1.676;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4056,465,0 chrI 195677 . A G 2372 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.9530;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.81;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2405,270,0 chrI 195872 . C T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.1983;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.56;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3362,369,0 chrI 195910 . A G 3531.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.9013;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.54;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3531,396,0 chrI 196198 . A G 1543 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.78;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1576,177,0 chrI 196248 . G C 855 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.81;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:888,102,0 chrI 196284 . G A 632 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=17.56;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:75:665,75,0 chrI 196423 . C T 1299 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=23.62;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1332,144,0 chrI 196452 . C T 1250 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.3527;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.19;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1283,141,0 chrI 196500 . C T 1171 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=18.59;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1204,135,0 chrI 196523 . T A 1141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=1.392;QD=18.70;ReadPosRankSum=1.675;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1174,135,0 chrI 196564 . G A 1664 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=23.44;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1697,183,0 chrI 196587 . C T 1571 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=23.45;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1604,177,0 chrI 196623 . C T 1195 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=19.27;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1228,141,0 chrI 196647 . T C 1303 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.35;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1336,150,0 chrI 196805 . C T 1768 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=21.30;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1801,198,0 chrI 196861 . C T 893 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=37.58;MQ0=0;QD=15.67;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:926,102,0 chrI 196864 . C A 872 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=33.4178;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=14.78;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:905,102,0 chrI 196884 . C T 664 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.54;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:78:697,78,0 chrI 196891 . G T 799 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=12.89;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:93:832,93,0 chrI 196929 . A G 132.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.670;DP=96;Dels=0.00;FS=2.206;HaplotypeScore=82.1208;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=0;MQRankSum=-0.458;QD=1.38;ReadPosRankSum=2.926;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:3,92:96:21:165,21,0 chrI 196932 . C T 1263 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=81.6948;MLEAC=2;MLEAF=1.00;MQ=40.29;MQ0=0;QD=12.89;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1296,147,0 chrI 197024 . A G 1642 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=20.78;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1675,189,0 chrI 197120 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.25;MQ0=0;QD=18.14;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1575,177,0 chrI 197123 . G A 1577 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=18.55;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1610,174,0 chrI 197225 . G A 1593 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=17.51;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1626,183,0 chrI 197236 . G T 1667 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=20.08;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1700,192,0 chrI 197266 . G T 1703 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.35;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1736,192,0 chrI 197344 . C T 1502 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=21.77;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1535,168,0 chrI 197350 . G A 1606 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=21.70;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1639,180,0 chrI 197428 . A T 1610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=76;Dels=0.00;FS=2.992;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;MQRankSum=-0.178;QD=21.18;ReadPosRankSum=2.385;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1643,183,0 chrI 197459 . T C 1627 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=21.13;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1660,192,0 chrI 197484 . T C 1609 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=20.37;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1642,189,0 chrI 197497 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=19.39;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1507,171,0 chrI 197560 . A G 1274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;MQRankSum=-0.632;QD=20.22;ReadPosRankSum=1.677;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1307,150,0 chrI 197583 . T C 1061 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.86;MQ0=0;QD=19.65;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1094,126,0 chrI 197587 . G A 1090 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.46;MQ0=0;QD=20.96;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1123,123,0 chrI 197629 . C T 861 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;QD=14.35;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:894,105,0 chrI 197646 . T G 1048 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.68;MQ0=0;QD=17.18;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1081,132,0 chrI 197656 . A G 1273 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=38.68;MQ0=0;QD=16.97;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1306,156,0 chrI 197694 . G T 1482 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=0;QD=18.52;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1515,174,0 chrI 197695 . A G 1429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.590;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=0;MQRankSum=-1.169;QD=17.86;ReadPosRankSum=1.689;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1462,174,0 chrI 197758 . A G 723 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=0;QD=14.46;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:87:756,87,0 chrI 197760 . G C 676 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=0;MQRankSum=-1.732;QD=13.52;ReadPosRankSum=0.901;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:84:709,84,0 chrI 197765 . C G 793 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.6159;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;QD=14.42;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:93:826,93,0 chrI 197770 . A G 740 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.6159;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=0;MQRankSum=-0.999;QD=14.23;ReadPosRankSum=1.666;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:87:773,87,0 chrI 197772 . A G 696 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=50;Dels=0.00;FS=3.071;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;MQRankSum=-1.857;QD=13.92;ReadPosRankSum=2.352;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:81:729,81,0 chrI 197783 . G A 530 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=12.93;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:63:563,63,0 chrI 197791 . A G 482 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=11.48;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:57:515,57,0 chrI 197811 . G A 643 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=11.91;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:78:676,78,0 chrI 197813 . T C 676 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.090;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;MQRankSum=1.606;QD=12.29;ReadPosRankSum=1.669;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:81:709,81,0 chrI 197819 . A G 882 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=0;MQRankSum=-0.979;QD=12.60;ReadPosRankSum=1.682;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:915,108,0 chrI 197825 . G A 853 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=0;QD=12.92;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:886,102,0 chrI 197873 . G A 1010 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.10;MQ0=0;QD=12.17;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1043,120,0 chrI 197890 . C T 1178 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=0;QD=13.09;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1211,141,0 chrI 197908 . C T 1098 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.63;MQ0=0;QD=11.32;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1131,132,0 chrI 197983 . T A 1199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=6.5330;MLEAC=2;MLEAF=1.00;MQ=36.24;MQ0=0;MQRankSum=0.483;QD=15.99;ReadPosRankSum=2.383;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1232,138,0 chrI 198013 . T A 1117 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=33.89;MQ0=0;QD=18.31;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1150,126,0 chrI 198022 . A G 1124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=3.409;HaplotypeScore=47.2420;MLEAC=2;MLEAF=1.00;MQ=32.70;MQ0=0;MQRankSum=-1.428;QD=19.38;ReadPosRankSum=1.672;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:99:1157,132,0 chrI 198027 . C T 1059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=60;Dels=0.00;FS=6.247;HaplotypeScore=53.0753;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=0;MQRankSum=2.374;QD=17.65;ReadPosRankSum=2.781;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:3,57:60:99:1092,120,0 chrI 198118 . G A 2650 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=17.2500;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;QD=22.27;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2683,306,0 chrI 198168 . G T 2626 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=23.04;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2659,297,0 chrI 198190 . T C 2207 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=22.07;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2240,258,0 chrI 198215 . C A 1607 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.36;MQ0=0;QD=19.84;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1640,183,0 chrI 198232 . C G 1127 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;QD=16.10;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1160,135,0 chrI 198244 . G T 872 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.62;MQ0=0;QD=13.84;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:905,105,0 chrI 198252 . C G 659 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.73;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:78:692,78,0 chrI 198253 . T G 650 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.54;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:75:683,75,0 chrI 198259 . T C 633 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;QD=13.47;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:75:666,75,0 chrI 198267 . A G 660 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.02;MQ0=0;QD=14.35;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:78:693,78,0 chrI 198279 . A G 804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=0;MQRankSum=-1.228;QD=14.62;ReadPosRankSum=1.606;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:93:837,93,0 chrI 198287 . A G 934 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=14.59;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:967,108,0 chrI 198331 . G T 1338 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=18.58;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1371,153,0 chrI 198351 . G A 1674 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=19.47;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1707,186,0 chrI 198398 . C T 1370 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=21.08;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1403,153,0 chrI 198456 . T A 1138 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=32.55;MQ0=0;QD=21.47;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1171,129,0 chrI 198490 . G C 859 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=0;QD=19.52;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:892,105,0 chrI 198533 . C T 509 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.37;MQ0=0;QD=14.97;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:63:542,63,0 chrI 198536 . C T 523 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=0;QD=16.34;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:63:556,63,0 chrI 198560 . T C 480 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=12.97;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:57:513,57,0 chrI 198562 . G A 462 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.20;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:54:495,54,0 chrI 198568 . G C 356 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.19;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:45:389,45,0 chrI 198586 . A G 290 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=5.9729;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.08;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,22:24:36:323,36,0 chrI 198605 . C T 339 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.14;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:42:372,42,0 chrI 198619 . C T 251 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.94;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:33:284,33,0 chrI 198620 . T G 255 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.17;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:33:288,33,0 chrI 198623 . A T 261 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.50;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:33:294,33,0 chrI 198628 . C G 198.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.38;SB=-2.354e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:27:231,27,0 chrI 198642 . T C 206.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.36;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:239,27,0 chrI 198648 . C T 210.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.13;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:27:243,27,0 chrI 198652 . A G 238 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.52;SB=-2.602e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:30:271,30,0 chrI 198657 . C T 250 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.42;SB=-2.802e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:30:283,30,0 chrI 198664 . A G 183.03 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.32;SB=-2.804e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:24:216,24,0 chrI 198675 . T C 138.06 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=6.90;SB=-2.807e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:21:171,21,0 chrI 198676 . C T 138.06 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=6.90;SB=-2.707e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:21:171,21,0 chrI 198677 . A G 142.06 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=7.10;SB=-2.707e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:21:175,21,0 chrI 198707 . C T 204.01 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.29;SB=-2.302e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:27:237,27,0 chrI 198713 . C T 220 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=27.0622;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;QD=6.29;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:30:253,30,0 chrI 198851 . G C 159.06 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.72;SB=-2.694e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:21:192,21,0 chrI 198856 . T C 90.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.89;SB=-2.714e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:123,15,0 chrI 198946 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.98;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:55,6,0 chrI 198961 . G A 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.26;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:81,9,0 chrI 198964 . C T 78.51 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.23;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:111,12,0 chrI 198966 . C T 78.51 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.23;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:111,12,0 chrI 198971 . C T 79.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.36;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:112,12,0 chrI 198972 . C T 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.79;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:101,12,0 chrI 198973 . G A 77.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.07;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:110,12,0 chrI 198976 . T C 75.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.79;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:108,12,0 chrI 198980 . G A 65.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.36;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:98,12,0 chrI 198981 . G A 81.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.64;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:114,12,0 chrI 198983 . G A 71.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.22;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:104,12,0 chrI 198986 . C G 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.64;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:107,12,0 chrI 198988 . G A 70.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.07;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:103,12,0 chrI 198989 . G C 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.50;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:106,12,0 chrI 198990 . C T 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.50;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:106,12,0 chrI 198994 . G A 80.51 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.66;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:12:113,12,0 chrI 199012 . C G 72.51 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.30;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:12:105,12,0 chrI 199026 . T A 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.38;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,18:18:6:56,6,0 chrI 199027 . G T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.21;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,18:18:6:53,6,0 chrI 199029 . T G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.32;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,18:18:6:55,6,0 chrI 199032 . C T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.21;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,18:18:6:53,6,0 chrI 202563 . A G 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=1.73;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:77,9,0 chrI 202564 . T G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=1.85;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:80,9,0 chrI 202567 . G A 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=1.73;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:77,9,0 chrI 202571 . A C 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=1.88;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:81,9,0 chrI 202572 . G A 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=1.81;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:79,9,0 chrI 202575 . G T 51.97 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=2.00;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:84,9,0 chrI 202579 . A G 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=1.69;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:76,9,0 chrI 202581 . T C 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=1.81;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:79,9,0 chrI 202589 . G A 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=1.22;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,37:37:9:77,9,0 chrI 202616 . C G 126.13 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=3.41;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,37:37:18:159,18,0 chrI 202618 . T C 127.13 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=3.44;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,37:37:18:160,18,0 chrI 202626 . A T 104.26 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=2.82;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,37:37:15:137,15,0 chrI 202631 . G A 108.26 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.38;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:15:141,15,0 chrI 202633 . G A 153.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.78;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:21:186,21,0 chrI 202636 . C T 163.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.80;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,34:34:21:196,21,0 chrI 202663 . C T 158.06 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=29.7215;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=4.52;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,35:35:21:191,21,0 chrI 202664 . T C 174.03 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=29.7215;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=4.97;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,35:35:24:207,24,0 chrI 202692 . G T 274 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=37.6685;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;QD=5.83;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,47:47:33:307,33,0 chrI 202710 . T C 128.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8328;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;MQRankSum=1.750;QD=1.78;ReadPosRankSum=5.040;SB=-1.416e-01 GT:AD:DP:GQ:PL 1/1:10,62:72:18:161,18,0 chrI 202712 . C G 147.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.148;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8328;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;MQRankSum=0.318;QD=2.04;ReadPosRankSum=5.040;SB=1.12 GT:AD:DP:GQ:PL 1/1:10,62:72:21:180,21,0 chrI 202713 . T C 218 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;MQRankSum=0.306;QD=3.21;ReadPosRankSum=1.681;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:1,67:68:30:251,30,0 chrI 202718 . A T 690 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=8.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:81:723,81,0 chrI 202724 . A G 728 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;QD=8.77;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:87:761,87,0 chrI 202727 . T C 792 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.08;MQ0=0;MQRankSum=-1.732;QD=9.21;ReadPosRankSum=1.692;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:1,85:86:96:825,96,0 chrI 202732 . G A 904 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=0;QD=9.93;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,91:91:99:937,105,0 chrI 202763 . C G 2106 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=39.74;MQ0=0;QD=15.95;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2139,252,0 chrI 202801 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=21.33;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2955,318,0 chrI 202825 . G A 2820 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=21.86;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2853,318,0 chrI 202953 . A G 2751 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=21.16;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2784,312,0 chrI 202957 . T C 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=5.111;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;MQRankSum=0.664;QD=20.59;ReadPosRankSum=1.628;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2812,321,0 chrI 202977 . A T 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.20;MQ0=0;MQRankSum=1.064;QD=24.04;ReadPosRankSum=1.683;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3366,354,0 chrI 203049 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=22.19;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2740,306,0 chrI 203105 . A G 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=-1.033;QD=20.22;ReadPosRankSum=1.703;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2439,279,0 chrI 203111 . C T 2377 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=20.32;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2410,270,0 chrI 203180 . T C 856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=3.174;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=0;MQRankSum=-1.027;QD=15.56;ReadPosRankSum=1.668;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:1,53:55:99:889,102,0 chrI 203181 . G A 861 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=37.55;MQ0=0;QD=15.65;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:894,102,0 chrI 203214 . G C 874 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;QD=14.33;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:907,105,0 chrI 203215 . C T 788 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;QD=12.92;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:96:821,96,0 chrI 203222 . A C 849 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;QD=12.30;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:882,99,0 chrI 203235 . A G 1113 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2345;MLEAC=2;MLEAF=1.00;MQ=37.69;MQ0=0;QD=13.74;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1146,132,0 chrI 203283 . A T 1754 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;QD=19.93;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1787,198,0 chrI 203301 . G A 1623 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.13;MQ0=0;QD=17.27;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1656,189,0 chrI 203313 . G A 2021 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=20.62;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2054,231,0 chrI 203349 . C T 1909 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=37.98;MQ0=0;QD=19.89;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1942,216,0 chrI 203386 . A T 2244 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=0;QD=21.58;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2277,255,0 chrI 203458 . C T 1857 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;QD=22.93;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1890,204,0 chrI 203461 . G A 1759 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.39;MQ0=0;QD=21.99;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1792,198,0 chrI 203561 . A G 1207 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=8;MQRankSum=-2.318;QD=18.57;ReadPosRankSum=2.362;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1240,141,0 chrI 203567 . G T 1057 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.14;MQ0=7;QD=15.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1090,126,0 chrI 203588 . T C 1264 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=1;QD=20.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1297,147,0 chrI 203589 . G C 1255 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=20.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1288,147,0 chrI 203590 . G A 1298 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=20.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1331,147,0 chrI 203597 . C A 599 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.11;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:75:632,75,0 chrI 203598 . T G 544 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.54;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:75:577,75,0 chrI 203599 . C A 491 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.03;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:69:524,69,0 chrI 203600 . A C 481 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.74;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:69:514,69,0 chrI 203604 . A G 597 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.06;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:75:630,75,0 chrI 203605 . C T 642 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.34;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:75:675,75,0 chrI 203610 . C T 684 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:78:717,78,0 chrI 203612 . A G 661 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:78:694,78,0 chrI 203615 . T C 668 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:78:701,78,0 chrI 203621 . C T 687 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:81:720,81,0 chrI 203622 . G A 695 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:81:728,81,0 chrI 203624 . A T 692 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:81:725,81,0 chrI 203627 . A G 688 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:81:721,81,0 chrI 203633 . T G 620 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.69;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:75:653,75,0 chrI 203639 . C A 513 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.50;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:60:546,60,0 chrI 203642 . G T 409 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.87;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:51:442,51,0 chrI 203645 . T C 331 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.20;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:42:364,42,0 chrI 203646 . G A 345 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.50;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:42:378,42,0 chrI 203648 . T C 333 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.24;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:42:366,42,0 chrI 203655 . A C 238 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.10;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,39:39:30:271,30,0 chrI 203660 . C T 233 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.30;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:30:266,30,0 chrI 203668 . G C 75.51 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.80;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:12:108,12,0 chrI 203669 . T A 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.46;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:12:99,12,0 chrI 203670 . T A 75.51 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.80;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:12:108,12,0 chrI 203672 . A C 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.76;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:12:107,12,0 chrI 203678 . C G 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.50;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,29:29:12:105,12,0 chrI 203683 . T A 75.51 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.70;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:12:108,12,0 chrI 203686 . C A 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.68;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:106,12,0 chrI 203687 . T G 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.63;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:105,12,0 chrI 203690 . T C 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.73;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:107,12,0 chrI 203703 . T G 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.91;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:79,9,0 chrI 203705 . C A 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.83;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:78,9,0 chrI 203711 . A T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.741;QD=2.38;ReadPosRankSum=1.393;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:1,9:10:6:55,6,0 chrI 203714 . C T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.64;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:55,6,0 chrI 203828 . T G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.727;QD=5.45;ReadPosRankSum=0.727;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,3:4:6:53,6,0 chrI 203831 . T C 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.198;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.198;QD=1.99;ReadPosRankSum=1.495;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:2,5:7:6:45,6,0 chrI 203860 . C T 1178 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=21.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1211,135,0 chrI 203912 . A T 3300.01 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=26.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3300,372,0 chrI 203922 . A G 3539.01 filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.7634;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=24.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3539,411,0 chrI 203973 . G A 1651 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=21.44;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1684,207,0 chrI 203984 . G A 1310 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=24.26;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1343,153,0 chrI 204012 . A G 634 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=26.76;MQ0=0;QD=20.45;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:81:667,81,0 chrI 204023 . C T 301 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=18.81;SB=-1.779e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:42:334,42,0 chrI 204029 . T C 173.03 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=15.73;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:24:206,24,0 chrI 204035 . C T 260 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=17.33;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:33:293,33,0 chrI 204041 . C A 244 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=16.27;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:33:277,33,0 chrI 204043 . A T 262 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=17.47;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:33:295,33,0 chrI 204047 . T C 359 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=17.10;SB=-6.790e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:45:392,45,0 chrI 204050 . T C 349 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;QD=13.96;SB=-7.066e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:42:382,42,0 chrI 204071 . G A 1059 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=16.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1092,126,0 chrI 204074 . C T 1156 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=17.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1189,132,0 chrI 204113 . T G 2151 filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=18.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2184,246,0 chrI 204116 . A T 2182 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=18.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2215,249,0 chrI 204125 . C A 2154 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=18.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2187,249,0 chrI 204126 . A G 2155 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=18.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2188,249,0 chrI 204129 . G A 2208 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=18.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2241,249,0 chrI 204131 . A C 2109 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=18.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2142,249,0 chrI 204146 . A G 1938 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=0;MQRankSum=-0.884;QD=17.15;ReadPosRankSum=2.938;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:1971,225,0 chrI 204149 . G A 1852 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.724;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=0;MQRankSum=0.189;QD=16.84;ReadPosRankSum=1.575;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:1885,213,0 chrI 204155 . C G 1563 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=15.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1596,189,0 chrI 204167 . C T 1621 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=17.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1654,189,0 chrI 204173 . C T 1134 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=0;QD=16.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1167,129,0 chrI 204174 . C T 1096 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=0;QD=15.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1129,129,0 chrI 204176 . A G 1015 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=0;QD=14.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1048,123,0 chrI 204178 . G C 1087 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=0;QD=15.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1120,129,0 chrI 204186 . A G 933 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=0;MQRankSum=0.666;QD=14.35;ReadPosRankSum=1.679;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,64:65:99:966,111,0 chrI 204188 . C T 887 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=0;QD=13.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:920,105,0 chrI 204194 . T C 507 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.39;MQ0=0;QD=12.07;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:63:540,63,0 chrI 204195 . G A 526 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.39;MQ0=0;QD=12.52;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:63:559,63,0 chrI 204197 . C T 535 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.39;MQ0=0;QD=12.74;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:63:568,63,0 chrI 204200 . T A 511 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.39;MQ0=0;QD=12.17;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:63:544,63,0 chrI 204203 . C T 534 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.39;MQ0=0;QD=12.71;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:63:567,63,0 chrI 204212 . T C 417 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.36;MQ0=0;QD=12.26;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:51:450,51,0 chrI 204216 . G A 407 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=0;QD=14.54;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:51:440,51,0 chrI 204219 . G A 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=9.79;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:81,9,0 chrI 204224 . T G 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=8.39;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:74,9,0 chrI 204225 . A C 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=7.79;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:71,9,0 chrI 204233 . A C 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=7.99;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:72,9,0 chrI 204236 . T C 33.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=6.79;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:66,9,0 chrI 204239 . A C 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=7.99;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:72,9,0 chrI 204242 . G T 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=9.79;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:81,9,0 chrI 206351 . T C 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=0.91;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,25:25:6:54,6,0 chrI 206352 . G A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=0.95;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,25:25:6:55,6,0 chrI 206354 . G C 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=0.95;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,25:25:6:55,6,0 chrI 206361 . A G 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.24;MQ0=0;QD=1.05;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,39:39:9:73,9,0 chrI 206365 . G A 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=0;QD=1.32;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:9:82,9,0 chrI 206369 . T A 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.09;MQ0=0;QD=1.25;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,36:36:9:77,9,0 chrI 206375 . C A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.42;MQ0=0;QD=0.66;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,27:27:6:49,6,0 chrI 206377 . G C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.42;MQ0=0;QD=0.59;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,27:27:6:47,6,0 chrI 206392 . G T 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.26;MQ0=0;QD=0.31;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,44:44:6:45,6,0 chrI 206393 . C A 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.26;MQ0=0;QD=0.37;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,44:44:6:48,6,0 chrI 206396 . C T 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.09;MQ0=0;QD=0.26;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,66:66:6:48,6,0 chrI 206399 . C A 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.09;MQ0=0;QD=0.21;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,66:66:6:45,6,0 chrI 206405 . A G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.720;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;MQRankSum=3.717;QD=0.24;ReadPosRankSum=3.732;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:15,54:69:6:48,6,0 chrI 206417 . T C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.371;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;MQRankSum=3.470;QD=0.23;ReadPosRankSum=1.287;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:15,54:69:6:47,6,0 chrI 206422 . T C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=0;MQRankSum=3.367;QD=0.23;ReadPosRankSum=1.915;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:17,57:74:6:48,6,0 chrI 206426 . T C 63.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=26.55;MQ0=0;MQRankSum=-0.440;QD=0.86;ReadPosRankSum=1.556;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,58:74:12:96,12,0 chrI 206432 . A G 114.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-4.571;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=26.44;MQ0=0;MQRankSum=3.134;QD=1.61;ReadPosRankSum=3.430;SB=-1.416e-01 GT:AD:DP:GQ:PL 1/1:15,56:71:18:147,18,0 chrI 206441 . A G 68.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.934;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=0;MQRankSum=3.531;QD=1.14;ReadPosRankSum=3.465;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:8,51:60:12:101,12,0 chrI 206447 . C T 93.26 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=2.07;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,45:45:15:126,15,0 chrI 206450 . C T 70.51 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=1.72;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,41:41:12:103,12,0 chrI 206451 . G A 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=1.70;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,41:41:12:102,12,0 chrI 206456 . C T 77.51 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=1.99;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,39:39:12:110,12,0 chrI 206459 . T C 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;QD=1.96;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,37:37:12:105,12,0 chrI 206462 . T C 74.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;MQRankSum=-1.444;QD=2.07;ReadPosRankSum=1.636;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,35:36:12:107,12,0 chrI 206469 . C G 87.26 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=2.81;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,31:31:15:120,15,0 chrI 206470 . A T 94.26 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=3.04;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,31:31:15:127,15,0 chrI 206487 . G A 79.51 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=4.18;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:12:112,12,0 chrI 206489 . G C 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=2.31;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:0,18:19:9:76,9,0 chrI 206496 . A G 99.26 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=5.84;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:15:132,15,0 chrI 206500 . G A 79.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=4.97;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:112,12,0 chrI 206504 . T A 102.26 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=6.82;SB=-2.718e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:135,15,0 chrI 206558 . T C 75.26 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.02;MQ0=0;QD=7.53;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:108,15,0 chrI 206561 . T A 97.13 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.66;MQ0=0;QD=6.48;SB=-5.011e+01 GT:AD:DP:GQ:PL 1/1:0,13:15:18:130,18,0 chrI 206564 . G T 145.03 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.37;MQ0=0;QD=9.06;SB=-7.603e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:24:178,24,0 chrI 206567 . T A 171.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=21;Dels=0.00;FS=5.798;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.73;MQ0=0;MQRankSum=-1.369;QD=8.14;ReadPosRankSum=1.552;SB=-5.702e+01 GT:AD:DP:GQ:PL 1/1:1,18:21:27:204,27,0 chrI 206580 . T A 696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.296;DP=59;Dels=0.00;FS=20.082;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=0;MQRankSum=1.265;QD=11.80;ReadPosRankSum=3.265;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:4,55:59:84:729,84,0 chrI 206785 . T A 321.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;DP=88;Dels=0.00;FS=51.717;HaplotypeScore=35.8867;MLEAC=1;MLEAF=0.500;MQ=25.50;MQ0=5;MQRankSum=-0.728;QD=3.65;ReadPosRankSum=-1.791;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:46,42:88:98:351,0,98 chrI 206799 . T G 353 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.217;DP=69;Dels=0.00;FS=10.280;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=4;MQRankSum=1.678;QD=5.12;ReadPosRankSum=1.678;SB=-9.601e+01 GT:AD:DP:GQ:PL 1/1:1,67:69:45:386,45,0 chrI 206803 . C T 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.036;DP=71;Dels=0.00;FS=11.164;HaplotypeScore=18.7492;MLEAC=1;MLEAF=0.500;MQ=26.29;MQ0=4;MQRankSum=-0.965;QD=0.21;ReadPosRankSum=-2.243;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,27:71:45:45,0,255 chrI 206811 . C T 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.910;DP=72;Dels=0.00;FS=11.795;HaplotypeScore=33.5741;MLEAC=1;MLEAF=0.500;MQ=26.69;MQ0=2;MQRankSum=-2.451;QD=0.50;ReadPosRankSum=0.647;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,30:72:66:66,0,275 chrI 206812 . C T 210.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;DP=72;Dels=0.00;FS=30.174;HaplotypeScore=33.5741;MLEAC=1;MLEAF=0.500;MQ=26.69;MQ0=2;MQRankSum=2.866;QD=2.92;ReadPosRankSum=-3.011;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:51,21:72:82:240,0,82 chrI 206818 . T C 148.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015;DP=67;Dels=0.00;FS=6.500;HaplotypeScore=61.9332;MLEAC=1;MLEAF=0.500;MQ=26.54;MQ0=0;MQRankSum=1.512;QD=2.21;ReadPosRankSum=-3.482;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:52,15:67:99:178,0,101 chrI 206828 . A T 66.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=55.0203;MLEAC=1;MLEAF=0.500;MQ=26.51;MQ0=0;MQRankSum=-0.132;QD=0.99;ReadPosRankSum=6.126;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,33:67:96:96,0,172 chrI 206833 . T C 123.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=42.1781;MLEAC=1;MLEAF=0.500;MQ=25.39;MQ0=6;MQRankSum=1.273;QD=1.66;ReadPosRankSum=-4.511;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,10:74:99:153,0,124 chrI 206867 . T C 178.03 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.01;MQ0=14;QD=4.45;SB=-4.094e-02 GT:AD:DP:GQ:PL 1/1:1,39:40:24:211,24,0 chrI 219826 . C T 388.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;DP=523;Dels=0.00;FS=0.000;HaplotypeScore=18.3103;MLEAC=1;MLEAF=0.500;MQ=14.04;MQ0=240;MQRankSum=0.053;QD=0.74;ReadPosRankSum=1.192;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:362,154:523:99:418,0,1669 chrI 220048 . C G 808 filter AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=10.35;MQ0=146;QD=3.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:103,97:204:96:841,96,0 chrI 220328 . C G 1853 filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=20.73;MQ0=22;QD=15.84;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:18,98:117:99:1886,213,0 chrI 220596 . G A 1487.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;DP=242;Dels=0.00;FS=27.069;HaplotypeScore=17.3054;MLEAC=1;MLEAF=0.500;MQ=17.93;MQ0=89;MQRankSum=9.581;QD=6.14;ReadPosRankSum=0.504;SB=-6.870e+02 GT:AD:DP:GQ:PL 0/1:143,98:242:99:1517,0,511 chrI 222339 . G A 982.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.667;DP=987;Dels=0.00;FS=2.144;HaplotypeScore=203.3101;MLEAC=1;MLEAF=0.500;MQ=16.71;MQ0=329;MQRankSum=1.765;QD=0.99;ReadPosRankSum=1.131;SB=-5.201e+01 GT:AD:DP:GQ:PL 0/1:768,205:987:99:1012,0,6203 chrI 222348 . G A 2975.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.210;DP=967;Dels=0.00;FS=0.000;HaplotypeScore=165.7506;MLEAC=1;MLEAF=0.500;MQ=15.22;MQ0=346;MQRankSum=-0.181;QD=3.08;ReadPosRankSum=-0.596;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:463,493:967:99:3005,0,2911 chrI 225099 . G A 199.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.074;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.6412;MLEAC=1;MLEAF=0.500;MQ=20.04;MQ0=30;MQRankSum=-3.440;QD=3.16;ReadPosRankSum=-1.683;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,27:63:98:229,0,98 chrI 226519 . A C 1480 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.583;DP=92;Dels=0.00;FS=105.162;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=21;MQRankSum=5.598;QD=16.09;ReadPosRankSum=5.598;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:13,72:92:99:1513,154,0 chrI 227665 . G A 99.26 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.48;MQ0=5;QD=9.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:15:132,15,0 chrI 227697 . C T 104.26 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=4;QD=11.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:15:137,15,0 chrI 227707 . A C 99.26 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=4;QD=11.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:15:132,15,0 chrI 227853 . G A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.28;MQ0=4;QD=3.26;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:7:6:54,6,0 chrI 228232 . C T 175.03 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.44;MQ0=9;QD=6.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,25:26:24:208,24,0 chrI 228234 . A G 194.01 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.44;MQ0=9;QD=7.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:27:227,27,0 chrI 228268 . A G 32.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.80;MQ0=49;MQRankSum=-0.480;QD=0.54;ReadPosRankSum=0.000;SB=-4.532e+01 GT:AD:DP:GQ:PL 0/1:26,33:59:15:62,0,15 chrI 228446 . G C 65.51 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=17.70;MQ0=11;QD=2.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,27:30:12:98,12,0 chrI 229086 . C T 23.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=16.97;MQ0=0;MQRankSum=-0.425;QD=1.44;ReadPosRankSum=2.123;SB=-4.292e+01 GT:AD:DP:GQ:PL 0/1:2,13:16:14:53,0,14 chrI 229092 . A G 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.84;MQ0=0;MQRankSum=-1.240;QD=2.36;ReadPosRankSum=1.488;SB=-4.347e+01 GT:AD:DP:GQ:PL 1/1:1,13:14:9:65,9,0 chrI 229098 . C T 32.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.73;MQ0=0;QD=3.00;SB=-4.347e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:65,9,0 chrI 229104 . C A 32.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.73;MQ0=0;QD=3.00;SB=-4.347e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:65,9,0 chrII 98 . A C 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.22;MQ0=23;MQRankSum=-2.239;QD=0.59;ReadPosRankSum=0.825;SB=6.615e-03 GT:AD:DP:GQ:PL 0/1:25,9:34:36:50,0,36 chrII 100 . A T 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.532;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.39;MQ0=22;MQRankSum=-2.239;QD=1.18;ReadPosRankSum=1.296;SB=0.014 GT:AD:DP:GQ:PL 0/1:24,9:33:34:69,0,34 chrII 110 . T G 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.13;MQ0=12;QD=2.60;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:11,9:21:12:87,12,0 chrII 114 . T A 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.14;MQ0=4;QD=4.19;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:3,10:13:12:87,12,0 chrII 117 . C T 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.13;MQ0=1;QD=5.45;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:10:12:87,12,0 chrII 118 . A T 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.06;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:87,12,0 chrII 120 . T C 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.06;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:87,12,0 chrII 121 . T C 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.06;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:87,12,0 chrII 127 . C G 54.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.92;MQ0=0;MQRankSum=-1.741;QD=5.45;ReadPosRankSum=1.393;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:1,9:10:12:87,12,0 chrII 129 . C G 42.18 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.92;MQ0=0;MQRankSum=-1.741;QD=4.22;ReadPosRankSum=1.393;SB=-6.424e-01 GT:AD:DP:GQ:PL 0/1:1,9:10:11:72,0,11 chrII 140 . C G 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;DP=12;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.70;MQ0=0;MQRankSum=2.404;QD=2.42;ReadPosRankSum=-2.589;SB=-1.900e+01 GT:AD:DP:GQ:PL 0/1:9,3:12:59:59,0,66 chrII 143 . C T 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;DP=17;Dels=0.00;FS=5.315;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=0;MQRankSum=-2.688;QD=2.12;ReadPosRankSum=1.528;SB=7.159e-03 GT:AD:DP:GQ:PL 0/1:5,12:17:62:66,0,62 chrII 145 . G A 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;DP=18;Dels=0.00;FS=3.274;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=25.55;MQ0=0;MQRankSum=-3.512;QD=2.00;ReadPosRankSum=3.416;SB=2.116e-03 GT:AD:DP:GQ:PL 0/1:8,9:18:65:66,0,65 chrII 147 . C T 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.583;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=26.42;MQ0=0;MQRankSum=-3.799;QD=1.50;ReadPosRankSum=3.723;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,9:20:60:60,0,113 chrII 255 . C G 459 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.659;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.6823;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=9;MQRankSum=2.216;QD=15.30;ReadPosRankSum=-1.258;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:11,19:30:51:492,51,0 chrII 279 . T A 244 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.041;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.79;MQ0=19;MQRankSum=2.041;QD=7.87;ReadPosRankSum=-0.322;SB=-5.598e+01 GT:AD:DP:GQ:PL 1/1:21,10:31:30:277,30,0 chrII 356 . T C 135.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;DP=38;Dels=0.00;FS=2.197;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=14.86;MQ0=21;MQRankSum=-3.074;QD=3.55;ReadPosRankSum=-0.049;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:28,10:38:46:165,0,46 chrII 358 . C T 132.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;DP=41;Dels=0.00;FS=12.882;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=15.47;MQ0=21;MQRankSum=-3.645;QD=3.22;ReadPosRankSum=-0.713;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:28,13:41:73:162,0,73 chrII 376 . T C 285.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;DP=51;Dels=0.00;FS=22.214;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.02;MQ0=13;MQRankSum=-5.099;QD=5.59;ReadPosRankSum=0.651;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:27,24:51:99:315,0,160 chrII 394 . T C 208.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.090;DP=43;Dels=0.00;FS=26.268;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.22;MQ0=0;MQRankSum=5.084;QD=4.84;ReadPosRankSum=-1.933;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,18:43:99:238,0,307 chrII 400 . C T 276.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.279;DP=44;Dels=0.00;FS=26.410;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.36;MQ0=0;MQRankSum=-5.189;QD=6.27;ReadPosRankSum=1.706;SB=-1.510e+02 GT:AD:DP:GQ:PL 0/1:19,25:44:99:306,0,258 chrII 430 . G A 157.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;DP=44;Dels=0.00;FS=37.353;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=23.58;MQ0=1;MQRankSum=-5.625;QD=3.57;ReadPosRankSum=-1.786;SB=-3.600e+01 GT:AD:DP:GQ:PL 0/1:23,21:44:99:187,0,310 chrII 433 . T C 77.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.819;DP=34;Dels=0.00;FS=28.099;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.34;MQ0=1;MQRankSum=-4.808;QD=2.26;ReadPosRankSum=-0.829;SB=-3.575e+01 GT:AD:DP:GQ:PL 0/1:21,13:34:99:107,0,325 chrII 457 . C T 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;DP=23;Dels=0.00;FS=6.435;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.16;MQ0=1;MQRankSum=-3.369;QD=0.53;ReadPosRankSum=-2.899;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:18,5:23:42:42,0,252 chrII 465 . T C 189.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.635;DP=33;Dels=0.00;FS=81.626;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.51;MQ0=2;MQRankSum=4.635;QD=5.73;ReadPosRankSum=4.635;SB=-3.987e-02 GT:AD:DP:GQ:PL 1/1:17,15:33:24:222,24,0 chrII 526 . C G 11.36 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;DP=121;Dels=0.00;FS=14.548;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=5.96;MQ0=102;MQRankSum=1.926;QD=0.09;ReadPosRankSum=0.066;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,2:121:19:41,0,19 chrII 541 . C G 58.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.150;DP=129;Dels=0.00;FS=35.884;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.59;MQ0=110;MQRankSum=2.950;QD=0.45;ReadPosRankSum=-0.050;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:125,4:129:12:91,12,0 chrII 547 . T A 61.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.050;DP=131;Dels=0.00;FS=35.884;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.54;MQ0=112;MQRankSum=2.950;QD=0.47;ReadPosRankSum=2.050;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:127,4:131:12:94,12,0 chrII 549 . C G 61.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.850;DP=132;Dels=0.00;FS=35.884;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.52;MQ0=113;MQRankSum=2.950;QD=0.47;ReadPosRankSum=2.950;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:128,4:132:12:94,12,0 chrII 564 . C G 81.26 filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.24;MQ0=109;QD=0.71;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:109,6:115:15:114,15,0 chrII 615 . G A 75.26 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.24;MQ0=45;QD=1.45;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:42,9:52:15:108,15,0 chrII 619 . T C 75.26 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.56;MQ0=40;QD=1.60;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:40,7:47:15:108,15,0 chrII 628 . T C 32.97 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.54;MQ0=42;QD=0.70;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:42,5:47:9:65,9,0 chrII 639 . A G 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.42;MQ0=44;MQRankSum=0.736;QD=0.66;ReadPosRankSum=0.736;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:44,5:50:9:65,9,0 chrII 644 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.68;MQ0=49;MQRankSum=1.380;QD=0.22;ReadPosRankSum=0.720;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:51,4:55:6:43,6,0 chrII 1372 . G C 790 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.509;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.9761;MLEAC=2;MLEAF=1.00;MQ=24.09;MQ0=14;MQRankSum=-1.733;QD=16.46;ReadPosRankSum=1.621;SB=-6.516e-03 GT:AD:DP:GQ:PL 1/1:1,38:48:90:823,90,0 chrII 1771 . A G 77.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.97;MQ0=0;MQRankSum=0.731;QD=15.50;ReadPosRankSum=0.731;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,4:5:12:110,12,0 chrII 1778 . A G 248 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.71;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:30:281,30,0 chrII 1795 . A C 351 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.55;SB=-7.059e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:42:384,42,0 chrII 1850 . G A 253.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.354;DP=55;Dels=0.00;FS=6.274;HaplotypeScore=3.4880;MLEAC=1;MLEAF=0.500;MQ=26.78;MQ0=2;MQRankSum=2.055;QD=4.60;ReadPosRankSum=-1.272;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,27:55:99:283,0,319 chrII 1924 . A G 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;DP=41;Dels=0.00;FS=7.570;HaplotypeScore=9.4095;MLEAC=1;MLEAF=0.500;MQ=24.95;MQ0=1;MQRankSum=-2.563;QD=0.49;ReadPosRankSum=3.702;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:33,8:41:50:50,0,323 chrII 1925 . G C 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.744;DP=41;Dels=0.00;FS=7.570;HaplotypeScore=10.1981;MLEAC=1;MLEAF=0.500;MQ=24.95;MQ0=1;MQRankSum=-2.563;QD=0.56;ReadPosRankSum=4.093;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:33,8:41:53:53,0,305 chrII 1927 . C G 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.820;DP=38;Dels=0.00;FS=7.231;HaplotypeScore=8.6208;MLEAC=1;MLEAF=0.500;MQ=24.60;MQ0=1;MQRankSum=-2.385;QD=0.61;ReadPosRankSum=4.052;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:30,8:38:53:53,0,282 chrII 1931 . T G 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;DP=35;Dels=0.00;FS=6.864;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=24.62;MQ0=1;MQRankSum=-2.428;QD=1.00;ReadPosRankSum=4.004;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:27,8:35:65:65,0,211 chrII 1937 . G C 121.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;DP=27;Dels=0.00;FS=4.949;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=23.33;MQ0=1;MQRankSum=1.835;QD=4.48;ReadPosRankSum=-3.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:9,17:27:89:151,0,89 chrII 1939 . A G 73.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.783;DP=26;Dels=0.00;FS=4.437;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.08;MQ0=1;MQRankSum=2.293;QD=2.81;ReadPosRankSum=-2.519;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:10,16:26:96:103,0,96 chrII 5890 . A T 51.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.826;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=18.3522;MLEAC=2;MLEAF=1.00;MQ=26.17;MQ0=0;MQRankSum=0.581;QD=1.13;ReadPosRankSum=0.489;SB=2.03 GT:AD:DP:GQ:PL 1/1:7,39:46:9:84,9,0 chrII 5899 . T A 123.15 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.063;DP=74;Dels=0.03;FS=0.000;HaplotypeScore=29.5293;MLEAC=1;MLEAF=0.500;MQ=26.58;MQ0=0;MQRankSum=1.207;QD=1.66;ReadPosRankSum=1.810;SB=3.84 GT:AD:DP:GQ:PL 1/1:5,51:72:18:156,18,0 chrII 5927 . T A 567.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;DP=147;Dels=0.00;FS=8.909;HaplotypeScore=68.8016;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=2;MQRankSum=2.773;QD=3.86;ReadPosRankSum=0.327;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,123:147:99:597,0,108 chrII 5928 . C T 487.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.744;DP=147;Dels=0.00;FS=4.210;HaplotypeScore=68.8016;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=2;MQRankSum=1.970;QD=3.31;ReadPosRankSum=2.382;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,90:147:99:517,0,199 chrII 5933 . T C 170.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;DP=198;Dels=0.00;FS=5.297;HaplotypeScore=91.2284;MLEAC=1;MLEAF=0.500;MQ=27.17;MQ0=5;MQRankSum=0.484;QD=0.86;ReadPosRankSum=1.612;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:136,62:198:99:200,0,546 chrII 5943 . T C 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.005;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=62.0369;MLEAC=1;MLEAF=0.500;MQ=27.30;MQ0=9;MQRankSum=1.544;QD=0.11;ReadPosRankSum=-0.875;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:173,57:230:55:55,0,1110 chrII 5944 . C T 868.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.100;DP=230;Dels=0.00;FS=5.248;HaplotypeScore=58.6974;MLEAC=1;MLEAF=0.500;MQ=27.30;MQ0=9;MQRankSum=2.957;QD=3.77;ReadPosRankSum=-0.950;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,155:230:99:898,0,278 chrII 5945 . C T 16.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;DP=241;Dels=0.00;FS=12.194;HaplotypeScore=58.7174;MLEAC=1;MLEAF=0.500;MQ=27.42;MQ0=9;MQRankSum=-1.354;QD=0.07;ReadPosRankSum=4.812;SB=-1.366e-03 GT:AD:DP:GQ:PL 0/1:226,15:241:46:46,0,1112 chrII 5948 . T C 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.848;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=58.7174;MLEAC=1;MLEAF=0.500;MQ=27.45;MQ0=9;MQRankSum=0.797;QD=0.16;ReadPosRankSum=-0.815;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:187,58:245:70:70,0,1169 chrII 5950 . C T 859.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;DP=244;Dels=0.00;FS=5.450;HaplotypeScore=58.7174;MLEAC=1;MLEAF=0.500;MQ=27.48;MQ0=9;MQRankSum=1.278;QD=3.52;ReadPosRankSum=-2.197;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,168:244:99:889,0,300 chrII 5951 . A C 848.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.901;DP=244;Dels=0.00;FS=5.563;HaplotypeScore=69.1684;MLEAC=1;MLEAF=0.500;MQ=27.48;MQ0=9;MQRankSum=3.210;QD=3.48;ReadPosRankSum=-2.234;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,169:243:99:878,0,293 chrII 5972 . C G 864.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.351;DP=279;Dels=0.00;FS=3.667;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=27.66;MQ0=9;MQRankSum=2.360;QD=3.10;ReadPosRankSum=-1.756;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,204:279:99:894,0,301 chrII 5980 . C T 1634 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=284;Dels=0.00;FS=21.383;HaplotypeScore=11.1138;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=9;MQRankSum=1.656;QD=5.75;ReadPosRankSum=0.989;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:1,283:284:99:1667,186,0 chrII 6000 . T C,G 841.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.715;DP=213;Dels=0.03;FS=0.000;HaplotypeScore=5.7730;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.22;MQ0=8;MQRankSum=1.384;QD=3.95;ReadPosRankSum=1.715;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/2:1,41,165:207:99:901,712,688,189,0,99 chrII 6001 . C T 657.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.783;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.4134;MLEAC=1;MLEAF=0.500;MQ=28.22;MQ0=8;MQRankSum=0.183;QD=3.08;ReadPosRankSum=3.225;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,165:213:86:687,0,86 chrII 6002 . A C,T 832.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=5.7730;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.22;MQ0=8;QD=3.91;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/2:0,48,165:213:90:892,712,688,180,0,90 chrII 6006 . G T 743.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.841;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.4134;MLEAC=1;MLEAF=0.500;MQ=28.11;MQ0=8;MQRankSum=2.216;QD=3.33;ReadPosRankSum=4.030;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,173:223:99:773,0,106 chrII 6034 . G C 404 filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=0;QD=3.45;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,117:117:48:437,48,0 chrII 6041 . T C 371 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=51.8688;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;QD=3.82;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,97:97:45:404,45,0 chrII 6051 . T C 258.18 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=43.9326;MLEAC=1;MLEAF=0.500;MQ=27.39;MQ0=0;MQRankSum=0.169;QD=3.15;ReadPosRankSum=1.416;SB=-3.186e+00 GT:AD:DP:GQ:PL 0/1:6,76:82:11:288,0,11 chrII 6072 . T C 157.06 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.9392;MLEAC=2;MLEAF=1.00;MQ=19.47;MQ0=30;QD=2.15;SB=-8.707e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:21:190,21,0 chrII 6087 . C G 14.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.074;DP=62;Dels=0.00;FS=12.305;HaplotypeScore=3.8936;MLEAC=1;MLEAF=0.500;MQ=15.13;MQ0=30;MQRankSum=1.228;QD=0.23;ReadPosRankSum=1.113;SB=-4.952e-02 GT:AD:DP:GQ:PL 0/1:48,14:62:17:44,0,17 chrII 6089 . G C 13.25 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;DP=62;Dels=0.00;FS=15.600;HaplotypeScore=3.8936;MLEAC=1;MLEAF=0.500;MQ=15.01;MQ0=31;MQRankSum=1.421;QD=0.21;ReadPosRankSum=1.101;SB=-4.074e-02 GT:AD:DP:GQ:PL 0/1:48,14:62:18:43,0,18 chrII 6098 . C T 85.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.3921;MLEAC=2;MLEAF=1.00;MQ=13.57;MQ0=31;QD=1.42;SB=-1.952e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:15:118,15,0 chrII 6099 . A G 53.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;DP=60;Dels=0.00;FS=6.306;HaplotypeScore=7.3921;MLEAC=1;MLEAF=0.500;MQ=13.57;MQ0=31;MQRankSum=0.952;QD=0.89;ReadPosRankSum=1.793;SB=-1.642e+01 GT:AD:DP:GQ:PL 0/1:47,13:60:7:83,0,7 chrII 6116 . T A 852.41 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.811;DP=141;Dels=0.00;FS=25.907;HaplotypeScore=53.1906;MLEAC=2;MLEAF=1.00;MQ=21.57;MQ0=31;MQRankSum=2.961;QD=6.05;ReadPosRankSum=-4.081;SB=-1.074e+02 GT:AD:DP:GQ:PL 1/1:60,80:141:13:885,13,0 chrII 6155 . C T 3872.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.609;DP=316;Dels=0.01;FS=7.850;HaplotypeScore=51.6369;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=6;MQRankSum=3.812;QD=12.25;ReadPosRankSum=2.029;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:60,250:312:27:3872,27,0 chrII 6157 . T C 4828.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.646;DP=331;Dels=0.02;FS=50.706;HaplotypeScore=59.5237;MLEAC=2;MLEAF=1.00;MQ=27.38;MQ0=5;MQRankSum=4.709;QD=14.59;ReadPosRankSum=2.238;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:36,289:325:99:4828,408,0 chrII 6258 . C T 1768.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.554;DP=260;Dels=0.02;FS=2.558;HaplotypeScore=69.0344;MLEAC=1;MLEAF=0.500;MQ=27.94;MQ0=5;MQRankSum=3.720;QD=6.80;ReadPosRankSum=-2.794;SB=-3.770e+02 GT:AD:DP:GQ:PL 0/1:155,94:256:99:1798,0,997 chrII 6295 . C A 273.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.130;DP=151;Dels=0.00;FS=15.986;HaplotypeScore=421.5136;MLEAC=1;MLEAF=0.500;MQ=28.00;MQ0=2;MQRankSum=0.546;QD=1.81;ReadPosRankSum=-4.970;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:122,28:151:99:303,0,1073 chrII 6301 . G C 409.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;DP=154;Dels=0.01;FS=4.256;HaplotypeScore=87.9206;MLEAC=1;MLEAF=0.500;MQ=28.22;MQ0=2;MQRankSum=-1.296;QD=2.66;ReadPosRankSum=0.398;SB=-3.570e+02 GT:AD:DP:GQ:PL 0/1:64,89:153:99:439,0,1016 chrII 6302 . A G 502.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;DP=153;Dels=0.00;FS=22.861;HaplotypeScore=86.7177;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=2;MQRankSum=2.958;QD=3.28;ReadPosRankSum=2.910;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,38:153:99:532,0,990 chrII 6326 . T C 64.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;DP=125;Dels=0.01;FS=95.097;HaplotypeScore=35.9722;MLEAC=1;MLEAF=0.500;MQ=28.92;MQ0=4;MQRankSum=-0.798;QD=0.51;ReadPosRankSum=0.040;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,18:124:94:94,0,1169 chrII 6328 . A G 504.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;DP=130;Dels=0.00;FS=60.523;HaplotypeScore=71.0938;MLEAC=1;MLEAF=0.500;MQ=28.37;MQ0=3;MQRankSum=2.302;QD=3.88;ReadPosRankSum=-1.779;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,30:130:99:534,0,829 chrII 6334 . C T 139.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.447;DP=128;Dels=0.00;FS=142.739;HaplotypeScore=74.2934;MLEAC=1;MLEAF=0.500;MQ=28.07;MQ0=3;MQRankSum=-2.133;QD=1.09;ReadPosRankSum=2.415;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,27:128:99:169,0,1131 chrII 6335 . C T 666.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;DP=125;Dels=0.00;FS=26.081;HaplotypeScore=74.2934;MLEAC=1;MLEAF=0.500;MQ=27.97;MQ0=3;MQRankSum=-0.668;QD=5.33;ReadPosRankSum=5.653;SB=-7.290e+02 GT:AD:DP:GQ:PL 0/1:39,86:125:99:696,0,588 chrII 6337 . A G 124.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DP=121;Dels=0.00;FS=125.328;HaplotypeScore=73.5587;MLEAC=1;MLEAF=0.500;MQ=27.93;MQ0=3;MQRankSum=-2.620;QD=1.02;ReadPosRankSum=3.061;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,26:121:99:154,0,1045 chrII 6379 . A T 2088 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.7405;MLEAC=2;MLEAF=1.00;MQ=25.65;MQ0=2;QD=15.58;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2121,228,0 chrII 6389 . C G 1764.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.126;DP=144;Dels=0.00;FS=88.431;HaplotypeScore=20.5550;MLEAC=2;MLEAF=1.00;MQ=25.89;MQ0=2;MQRankSum=2.583;QD=12.25;ReadPosRankSum=3.595;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:19,125:144:24:1797,24,0 chrII 6434 . C T 175.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.207;DP=189;Dels=0.00;FS=2.862;HaplotypeScore=24.4552;MLEAC=1;MLEAF=0.500;MQ=26.43;MQ0=10;MQRankSum=1.570;QD=0.93;ReadPosRankSum=-3.221;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:154,32:189:99:205,0,1873 chrII 6440 . G C 2811 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.244;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=18.1458;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=11;MQRankSum=2.184;QD=14.64;ReadPosRankSum=0.733;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:3,184:192:99:2844,303,0 chrII 6458 . T A 884.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.417;DP=208;Dels=0.00;FS=74.651;HaplotypeScore=9.6487;MLEAC=1;MLEAF=0.500;MQ=27.06;MQ0=10;MQRankSum=4.799;QD=4.25;ReadPosRankSum=2.101;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:140,68:208:99:914,0,1670 chrII 6488 . G A 232.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.942;DP=237;Dels=0.00;FS=43.786;HaplotypeScore=10.2616;MLEAC=1;MLEAF=0.500;MQ=27.27;MQ0=11;MQRankSum=0.553;QD=0.98;ReadPosRankSum=-3.936;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:204,32:237:99:262,0,2896 chrII 6493 . A G 103.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.671;DP=233;Dels=0.00;FS=35.933;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=27.24;MQ0=11;MQRankSum=0.297;QD=0.44;ReadPosRankSum=-4.786;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:206,27:233:99:133,0,3043 chrII 6515 . A G 306.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.274;DP=207;Dels=0.00;FS=9.676;HaplotypeScore=26.2417;MLEAC=1;MLEAF=0.500;MQ=27.26;MQ0=7;MQRankSum=2.069;QD=1.48;ReadPosRankSum=-3.133;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:156,51:207:99:336,0,2181 chrII 6526 . C T 175.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.730;DP=151;Dels=0.00;FS=4.450;HaplotypeScore=17.8706;MLEAC=1;MLEAF=0.500;MQ=28.01;MQ0=4;MQRankSum=-0.449;QD=1.16;ReadPosRankSum=-2.566;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,29:151:99:205,0,1900 chrII 6533 . A T 113.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;DP=122;Dels=0.00;FS=2.343;HaplotypeScore=9.8784;MLEAC=1;MLEAF=0.500;MQ=27.62;MQ0=2;MQRankSum=-0.036;QD=0.93;ReadPosRankSum=-1.308;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,20:122:99:143,0,1445 chrII 6536 . C A 119.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.230;DP=105;Dels=0.00;FS=16.982;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=28.33;MQ0=1;MQRankSum=0.056;QD=1.13;ReadPosRankSum=-2.032;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,18:105:99:149,0,1301 chrII 6537 . A G 129.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.003;DP=100;Dels=0.00;FS=12.230;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=28.30;MQ0=1;MQRankSum=-0.748;QD=1.29;ReadPosRankSum=-0.748;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,14:100:99:159,0,1304 chrII 6545 . A G 124.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;DP=88;Dels=0.00;FS=9.040;HaplotypeScore=4.6227;MLEAC=1;MLEAF=0.500;MQ=28.06;MQ0=1;MQRankSum=-0.861;QD=1.41;ReadPosRankSum=-1.623;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,14:88:99:154,0,1103 chrII 6581 . T C 346 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.709;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=37.6262;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;MQRankSum=0.681;QD=4.74;ReadPosRankSum=2.904;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:3,70:73:42:379,42,0 chrII 6588 . T A 463 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=6.34;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:54:496,54,0 chrII 6589 . T A 477 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=6.53;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:54:510,54,0 chrII 6592 . C A 484 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=6.63;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:54:517,54,0 chrII 6593 . G T 477 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=6.53;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:54:510,54,0 chrII 6595 . A C 460 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=6.30;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:54:493,54,0 chrII 6603 . C T 366.08 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.538;DP=102;Dels=0.00;FS=37.664;HaplotypeScore=3.5764;MLEAC=2;MLEAF=1.00;MQ=23.32;MQ0=4;MQRankSum=4.996;QD=3.59;ReadPosRankSum=1.483;SB=-9.252e-02 GT:AD:DP:GQ:PL 1/1:23,79:102:20:399,20,0 chrII 6605 . C T 420 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.086;DP=100;Dels=0.00;FS=64.640;HaplotypeScore=7.8795;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=4;MQRankSum=4.185;QD=4.20;ReadPosRankSum=3.467;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:11,89:100:48:453,48,0 chrII 6607 . C G 416 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.989;DP=102;Dels=0.00;FS=85.847;HaplotypeScore=7.8795;MLEAC=2;MLEAF=1.00;MQ=23.20;MQ0=4;MQRankSum=4.748;QD=4.08;ReadPosRankSum=4.182;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:13,89:102:48:449,48,0 chrII 6609 . A C 407 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.597;DP=105;Dels=0.00;FS=90.522;HaplotypeScore=12.3499;MLEAC=2;MLEAF=1.00;MQ=22.89;MQ0=4;MQRankSum=5.156;QD=3.88;ReadPosRankSum=4.924;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:16,89:105:48:440,48,0 chrII 6618 . C G 335.64 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.882;DP=109;Dels=0.00;FS=83.055;HaplotypeScore=28.8850;MLEAC=1;MLEAF=0.500;MQ=22.90;MQ0=4;MQRankSum=5.705;QD=3.08;ReadPosRankSum=3.478;SB=-3.654e+00 GT:AD:DP:GQ:PL 0/1:30,79:109:5:365,0,5 chrII 6619 . T A 355.79 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.216;DP=109;Dels=0.00;FS=114.776;HaplotypeScore=28.8850;MLEAC=1;MLEAF=0.500;MQ=22.90;MQ0=4;MQRankSum=5.256;QD=3.26;ReadPosRankSum=5.285;SB=-3.805e+00 GT:AD:DP:GQ:PL 0/1:20,79:109:4:385,0,4 chrII 6621 . T C 326.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;DP=114;Dels=0.00;FS=121.986;HaplotypeScore=57.0007;MLEAC=1;MLEAF=0.500;MQ=23.08;MQ0=4;MQRankSum=3.947;QD=2.86;ReadPosRankSum=6.191;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,89:114:50:356,0,50 chrII 6624 . C T 350.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;DP=132;Dels=0.00;FS=141.733;HaplotypeScore=31.7331;MLEAC=1;MLEAF=0.500;MQ=22.88;MQ0=4;MQRankSum=3.452;QD=2.65;ReadPosRankSum=3.856;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:26,106:132:74:380,0,74 chrII 6626 . C T 344.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.706;DP=133;Dels=0.00;FS=93.485;HaplotypeScore=30.9010;MLEAC=1;MLEAF=0.500;MQ=22.93;MQ0=4;MQRankSum=4.933;QD=2.59;ReadPosRankSum=6.332;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,81:133:99:374,0,109 chrII 6631 . A G 350.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.866;DP=199;Dels=0.00;FS=126.704;HaplotypeScore=38.7229;MLEAC=1;MLEAF=0.500;MQ=23.38;MQ0=4;MQRankSum=4.947;QD=1.76;ReadPosRankSum=-0.415;SB=-6.175e-03 GT:AD:DP:GQ:PL 0/1:57,142:199:99:380,0,116 chrII 6633 . G A 362.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.832;DP=201;Dels=0.00;FS=130.704;HaplotypeScore=28.8602;MLEAC=1;MLEAF=0.500;MQ=23.38;MQ0=4;MQRankSum=4.453;QD=1.80;ReadPosRankSum=-0.141;SB=0.062 GT:AD:DP:GQ:PL 0/1:59,142:201:99:392,0,118 chrII 6661 . A G 463.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704;DP=242;Dels=0.00;FS=196.592;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.40;MQ0=6;MQRankSum=4.773;QD=1.91;ReadPosRankSum=-4.435;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:46,196:242:99:493,0,199 chrII 6663 . C A 522.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.802;DP=242;Dels=0.00;FS=196.592;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.40;MQ0=6;MQRankSum=4.881;QD=2.16;ReadPosRankSum=-4.706;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:45,196:242:99:552,0,178 chrII 6676 . G A 500.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.612;DP=257;Dels=0.00;FS=229.590;HaplotypeScore=66.7881;MLEAC=1;MLEAF=0.500;MQ=23.92;MQ0=8;MQRankSum=6.189;QD=1.95;ReadPosRankSum=0.268;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,158:257:99:530,0,489 chrII 6677 . G T 532.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.203;DP=255;Dels=0.00;FS=216.893;HaplotypeScore=67.7039;MLEAC=1;MLEAF=0.500;MQ=23.99;MQ0=8;MQRankSum=4.226;QD=2.09;ReadPosRankSum=0.855;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:72,158:255:99:562,0,437 chrII 6680 . A G 1370 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=259;Dels=0.00;FS=4.854;HaplotypeScore=88.7416;MLEAC=2;MLEAF=1.00;MQ=24.12;MQ0=8;MQRankSum=2.205;QD=5.29;ReadPosRankSum=0.142;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:2,257:259:99:1403,156,0 chrII 6684 . T C 851.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940;DP=272;Dels=0.00;FS=16.640;HaplotypeScore=175.5220;MLEAC=1;MLEAF=0.500;MQ=24.56;MQ0=7;MQRankSum=3.687;QD=3.13;ReadPosRankSum=4.497;SB=-3.550e+02 GT:AD:DP:GQ:PL 0/1:67,205:272:99:881,0,264 chrII 6689 . G A 1266 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.467;DP=252;Dels=0.00;FS=24.300;HaplotypeScore=150.5277;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=4;MQRankSum=2.102;QD=5.02;ReadPosRankSum=-1.202;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:22,230:252:90:1299,90,0 chrII 6690 . A G 454.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;DP=258;Dels=0.00;FS=190.470;HaplotypeScore=158.6434;MLEAC=1;MLEAF=0.500;MQ=25.10;MQ0=4;MQRankSum=2.786;QD=1.76;ReadPosRankSum=0.730;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,143:257:99:484,0,658 chrII 6698 . T G 818 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-6.857;DP=200;Dels=0.00;FS=130.753;HaplotypeScore=32.9549;MLEAC=2;MLEAF=1.00;MQ=25.74;MQ0=4;MQRankSum=-0.562;QD=4.09;ReadPosRankSum=-8.507;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:90,110:200:99:851,99,0 chrII 6699 . A T 830 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=32.9549;MLEAC=2;MLEAF=1.00;MQ=25.74;MQ0=4;QD=4.15;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,200:200:99:863,99,0 chrII 6704 . T A 1479 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=32.2762;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=5;MQRankSum=-1.368;QD=7.14;ReadPosRankSum=2.425;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:3,204:207:99:1512,168,0 chrII 6705 . C T 666.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.110;DP=209;Dels=0.00;FS=18.642;HaplotypeScore=33.0102;MLEAC=1;MLEAF=0.500;MQ=26.07;MQ0=5;MQRankSum=2.517;QD=3.19;ReadPosRankSum=5.438;SB=-2.130e+02 GT:AD:DP:GQ:PL 0/1:102,107:209:99:696,0,507 chrII 6706 . A G 451.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.366;DP=215;Dels=0.00;FS=119.997;HaplotypeScore=35.0047;MLEAC=1;MLEAF=0.500;MQ=26.16;MQ0=5;MQRankSum=2.379;QD=2.10;ReadPosRankSum=7.581;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,90:215:99:481,0,749 chrII 6712 . C T 406.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.037;DP=229;Dels=0.00;FS=107.651;HaplotypeScore=34.2160;MLEAC=1;MLEAF=0.500;MQ=26.23;MQ0=5;MQRankSum=2.924;QD=1.77;ReadPosRankSum=5.235;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,90:229:99:436,0,743 chrII 6713 . A T 560.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.767;DP=231;Dels=0.00;FS=7.578;HaplotypeScore=33.2213;MLEAC=1;MLEAF=0.500;MQ=26.21;MQ0=5;MQRankSum=2.812;QD=2.42;ReadPosRankSum=2.474;SB=-1.980e+02 GT:AD:DP:GQ:PL 0/1:124,107:231:99:590,0,577 chrII 6714 . T C 398.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;DP=231;Dels=0.00;FS=107.234;HaplotypeScore=33.2213;MLEAC=1;MLEAF=0.500;MQ=26.21;MQ0=5;MQRankSum=4.559;QD=1.72;ReadPosRankSum=4.076;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,90:231:99:428,0,701 chrII 6723 . A G 448.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.689;DP=304;Dels=0.00;FS=139.299;HaplotypeScore=17.6295;MLEAC=1;MLEAF=0.500;MQ=26.97;MQ0=6;MQRankSum=5.394;QD=1.47;ReadPosRankSum=-3.954;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:148,156:304:99:478,0,801 chrII 6724 . T C 437.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.314;DP=306;Dels=0.00;FS=134.569;HaplotypeScore=8.0593;MLEAC=1;MLEAF=0.500;MQ=27.34;MQ0=7;MQRankSum=4.335;QD=1.43;ReadPosRankSum=-3.881;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:150,156:306:99:467,0,751 chrII 6726 . A T 453.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.556;DP=308;Dels=0.00;FS=137.084;HaplotypeScore=12.8994;MLEAC=1;MLEAF=0.500;MQ=27.21;MQ0=7;MQRankSum=5.709;QD=1.47;ReadPosRankSum=-4.478;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:149,159:308:99:483,0,692 chrII 6735 . C A 566.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.348;DP=311;Dels=0.00;FS=45.767;HaplotypeScore=25.7231;MLEAC=1;MLEAF=0.500;MQ=29.14;MQ0=6;MQRankSum=-2.268;QD=1.82;ReadPosRankSum=7.444;SB=-4.090e+02 GT:AD:DP:GQ:PL 0/1:174,136:311:99:596,0,633 chrII 6740 . T C 725.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;DP=301;Dels=0.00;FS=62.667;HaplotypeScore=24.5374;MLEAC=1;MLEAF=0.500;MQ=29.40;MQ0=6;MQRankSum=3.650;QD=2.41;ReadPosRankSum=-2.935;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:144,157:301:99:755,0,609 chrII 6754 . A C 461.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.974;DP=281;Dels=0.00;FS=31.759;HaplotypeScore=43.8551;MLEAC=1;MLEAF=0.500;MQ=31.70;MQ0=5;MQRankSum=-4.488;QD=1.64;ReadPosRankSum=0.960;SB=-3.930e+02 GT:AD:DP:GQ:PL 0/1:143,95:281:99:491,0,808 chrII 6755 . T C 453.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.981;DP=284;Dels=0.00;FS=26.750;HaplotypeScore=42.2343;MLEAC=1;MLEAF=0.500;MQ=31.75;MQ0=5;MQRankSum=-0.361;QD=1.60;ReadPosRankSum=0.325;SB=-3.840e+02 GT:AD:DP:GQ:PL 0/1:189,95:284:99:483,0,980 chrII 6762 . C T 58.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;DP=241;Dels=0.00;FS=6.523;HaplotypeScore=104.2182;MLEAC=1;MLEAF=0.500;MQ=33.26;MQ0=4;MQRankSum=-0.030;QD=0.24;ReadPosRankSum=5.290;SB=-1.480e+02 GT:AD:DP:GQ:PL 0/1:184,57:241:88:88,0,1169 chrII 6766 . A C 114.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.984;DP=240;Dels=0.00;FS=20.755;HaplotypeScore=78.8182;MLEAC=1;MLEAF=0.500;MQ=33.76;MQ0=4;MQRankSum=-5.878;QD=0.48;ReadPosRankSum=3.471;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:142,95:240:99:144,0,1334 chrII 6767 . A T 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;DP=240;Dels=0.00;FS=0.863;HaplotypeScore=80.2862;MLEAC=1;MLEAF=0.500;MQ=33.79;MQ0=4;MQRankSum=0.300;QD=0.11;ReadPosRankSum=4.362;SB=-1.280e+02 GT:AD:DP:GQ:PL 0/1:185,55:240:56:56,0,1433 chrII 6769 . C T 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.736;DP=242;Dels=0.00;FS=17.730;HaplotypeScore=82.2767;MLEAC=1;MLEAF=0.500;MQ=33.75;MQ0=4;MQRankSum=-3.826;QD=0.40;ReadPosRankSum=3.191;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:143,99:242:99:127,0,1464 chrII 6813 . T G 2584.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.706;DP=280;Dels=0.00;FS=78.443;HaplotypeScore=33.6121;MLEAC=1;MLEAF=0.500;MQ=32.72;MQ0=6;MQRankSum=3.597;QD=9.23;ReadPosRankSum=4.072;SB=-1.117e+03 GT:AD:DP:GQ:PL 0/1:110,170:280:99:2614,0,504 chrII 6815 . T C 2581.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.933;DP=287;Dels=0.00;FS=87.050;HaplotypeScore=36.7009;MLEAC=1;MLEAF=0.500;MQ=32.33;MQ0=6;MQRankSum=4.557;QD=8.99;ReadPosRankSum=3.368;SB=-1.161e+03 GT:AD:DP:GQ:PL 0/1:110,177:287:99:2611,0,561 chrII 6817 . T C 197.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.815;DP=295;Dels=0.00;FS=19.406;HaplotypeScore=36.7009;MLEAC=1;MLEAF=0.500;MQ=31.95;MQ0=7;MQRankSum=-2.746;QD=0.67;ReadPosRankSum=-3.066;SB=-1.890e+02 GT:AD:DP:GQ:PL 0/1:216,79:295:99:227,0,3030 chrII 6958 . A G 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;DP=374;Dels=0.00;FS=10.949;HaplotypeScore=25.0835;MLEAC=1;MLEAF=0.500;MQ=32.06;MQ0=2;MQRankSum=-4.540;QD=0.09;ReadPosRankSum=-1.301;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:313,59:374:65:65,0,5635 chrII 6965 . T C 276.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.156;DP=372;Dels=0.00;FS=6.964;HaplotypeScore=36.1095;MLEAC=1;MLEAF=0.500;MQ=32.45;MQ0=2;MQRankSum=-5.998;QD=0.74;ReadPosRankSum=0.406;SB=-5.201e+01 GT:AD:DP:GQ:PL 0/1:296,72:372:99:306,0,4990 chrII 6982 . C A 547.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.137;DP=359;Dels=0.00;FS=0.000;HaplotypeScore=28.7423;MLEAC=1;MLEAF=0.500;MQ=35.31;MQ0=3;MQRankSum=-3.335;QD=1.52;ReadPosRankSum=2.635;SB=-4.060e+02 GT:AD:DP:GQ:PL 0/1:268,89:359:99:577,0,4554 chrII 6999 . A G 1674.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;DP=358;Dels=0.00;FS=15.485;HaplotypeScore=128.1928;MLEAC=1;MLEAF=0.500;MQ=36.13;MQ0=5;MQRankSum=-0.451;QD=4.68;ReadPosRankSum=0.403;SB=-7.110e+02 GT:AD:DP:GQ:PL 0/1:247,111:358:99:1704,0,3752 chrII 7006 . C G 1230.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;DP=350;Dels=0.00;FS=1.361;HaplotypeScore=123.5116;MLEAC=1;MLEAF=0.500;MQ=35.73;MQ0=7;MQRankSum=-2.324;QD=3.51;ReadPosRankSum=0.744;SB=-6.710e+02 GT:AD:DP:GQ:PL 0/1:229,118:350:99:1260,0,4316 chrII 7044 . C T 976.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;DP=313;Dels=0.00;FS=21.336;HaplotypeScore=20.0738;MLEAC=1;MLEAF=0.500;MQ=34.33;MQ0=12;MQRankSum=1.015;QD=3.12;ReadPosRankSum=1.065;SB=-1.270e+02 GT:AD:DP:GQ:PL 0/1:229,80:313:99:1006,0,3459 chrII 7075 . A G 1355.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;DP=236;Dels=0.00;FS=91.069;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=30.09;MQ0=13;MQRankSum=1.696;QD=5.74;ReadPosRankSum=1.371;SB=-3.690e+02 GT:AD:DP:GQ:PL 0/1:129,107:236:99:1385,0,1633 chrII 7085 . C T 970.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.556;DP=201;Dels=0.00;FS=131.814;HaplotypeScore=7.8756;MLEAC=1;MLEAF=0.500;MQ=26.78;MQ0=13;MQRankSum=0.656;QD=4.83;ReadPosRankSum=1.930;SB=-2.890e+02 GT:AD:DP:GQ:PL 0/1:111,89:201:99:1000,0,1447 chrII 7100 . C T 733.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;DP=183;Dels=0.00;FS=157.298;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=26.76;MQ0=8;MQRankSum=0.330;QD=4.01;ReadPosRankSum=1.057;SB=-2.570e+02 GT:AD:DP:GQ:PL 0/1:98,83:183:99:763,0,1324 chrII 7109 . G C 570.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.625;DP=172;Dels=0.00;FS=148.020;HaplotypeScore=94.5138;MLEAC=1;MLEAF=0.500;MQ=26.63;MQ0=6;MQRankSum=-0.973;QD=3.31;ReadPosRankSum=2.097;SB=-1.860e+02 GT:AD:DP:GQ:PL 0/1:99,72:172:99:600,0,1291 chrII 7116 . C A 1521 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=159;Dels=0.02;FS=12.620;HaplotypeScore=150.2470;MLEAC=2;MLEAF=1.00;MQ=27.24;MQ0=3;MQRankSum=0.070;QD=9.57;ReadPosRankSum=4.311;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:8,147:156:99:1554,183,0 chrII 7124 . C G 431.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.504;DP=155;Dels=0.00;FS=118.839;HaplotypeScore=100.1426;MLEAC=1;MLEAF=0.500;MQ=30.42;MQ0=3;MQRankSum=-2.452;QD=2.78;ReadPosRankSum=-0.159;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,52:155:99:461,0,1101 chrII 7125 . C G 257.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;DP=156;Dels=0.00;FS=12.229;HaplotypeScore=98.9472;MLEAC=1;MLEAF=0.500;MQ=30.70;MQ0=3;MQRankSum=2.777;QD=1.65;ReadPosRankSum=2.849;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:124,32:156:99:287,0,1369 chrII 7129 . A C 850.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.019;DP=150;Dels=0.00;FS=150.837;HaplotypeScore=66.5253;MLEAC=1;MLEAF=0.500;MQ=31.15;MQ0=3;MQRankSum=0.024;QD=5.67;ReadPosRankSum=2.470;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:69,80:150:99:880,0,757 chrII 7133 . T G 821.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;DP=144;Dels=0.00;FS=168.726;HaplotypeScore=81.5221;MLEAC=1;MLEAF=0.500;MQ=33.39;MQ0=3;MQRankSum=-1.905;QD=5.70;ReadPosRankSum=3.123;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,75:144:99:851,0,732 chrII 7138 . C T 893.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.345;DP=139;Dels=0.00;FS=183.975;HaplotypeScore=10.4476;MLEAC=1;MLEAF=0.500;MQ=35.64;MQ0=2;MQRankSum=-1.527;QD=6.42;ReadPosRankSum=3.375;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,71:139:99:923,0,815 chrII 7141 . A G 868.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.585;DP=148;Dels=0.00;FS=183.891;HaplotypeScore=8.8815;MLEAC=1;MLEAF=0.500;MQ=37.31;MQ0=2;MQRankSum=-2.621;QD=5.86;ReadPosRankSum=3.936;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,71:148:99:898,0,962 chrII 7150 . G C 958.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.731;DP=158;Dels=0.00;FS=203.542;HaplotypeScore=40.4708;MLEAC=1;MLEAF=0.500;MQ=39.07;MQ0=2;MQRankSum=-3.701;QD=6.06;ReadPosRankSum=2.361;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,79:158:99:988,0,1308 chrII 7156 . A G 402.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;DP=169;Dels=0.00;FS=80.528;HaplotypeScore=80.4776;MLEAC=1;MLEAF=0.500;MQ=40.26;MQ0=2;MQRankSum=-2.937;QD=2.38;ReadPosRankSum=1.103;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,44:169:99:432,0,2041 chrII 7162 . T C 309.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.644;DP=185;Dels=0.00;FS=64.488;HaplotypeScore=87.9279;MLEAC=1;MLEAF=0.500;MQ=40.40;MQ0=2;MQRankSum=-3.652;QD=1.67;ReadPosRankSum=-0.351;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,44:185:99:339,0,2475 chrII 7167 . A G 1078.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.693;DP=183;Dels=0.00;FS=182.926;HaplotypeScore=45.8950;MLEAC=1;MLEAF=0.500;MQ=40.75;MQ0=2;MQRankSum=-7.765;QD=5.89;ReadPosRankSum=-1.672;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,89:183:99:1108,0,1817 chrII 7168 . T C 1074.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.951;DP=182;Dels=0.00;FS=194.722;HaplotypeScore=44.1275;MLEAC=1;MLEAF=0.500;MQ=40.99;MQ0=2;MQRankSum=-7.371;QD=5.90;ReadPosRankSum=-1.913;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,90:182:99:1104,0,1776 chrII 7172 . C T 928.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.745;DP=194;Dels=0.00;FS=202.010;HaplotypeScore=44.1275;MLEAC=1;MLEAF=0.500;MQ=41.65;MQ0=2;MQRankSum=-7.946;QD=4.78;ReadPosRankSum=-2.924;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,98:194:99:958,0,1806 chrII 7181 . G A 719.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.970;DP=194;Dels=0.00;FS=155.636;HaplotypeScore=7.9303;MLEAC=1;MLEAF=0.500;MQ=43.31;MQ0=2;MQRankSum=-9.152;QD=3.71;ReadPosRankSum=-1.221;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,86:194:99:749,0,2249 chrII 7183 . T C 705.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;DP=196;Dels=0.00;FS=158.938;HaplotypeScore=7.2196;MLEAC=1;MLEAF=0.500;MQ=43.31;MQ0=2;MQRankSum=-9.086;QD=3.60;ReadPosRankSum=-1.225;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,86:196:99:735,0,2299 chrII 7186 . G A 643.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.708;DP=208;Dels=0.00;FS=146.901;HaplotypeScore=8.2154;MLEAC=1;MLEAF=0.500;MQ=43.20;MQ0=2;MQRankSum=-10.175;QD=3.09;ReadPosRankSum=-1.249;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,92:208:99:673,0,2403 chrII 7209 . A G 601.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.268;DP=244;Dels=0.00;FS=111.600;HaplotypeScore=8.6208;MLEAC=1;MLEAF=0.500;MQ=43.57;MQ0=0;MQRankSum=-11.252;QD=2.46;ReadPosRankSum=1.553;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:143,100:244:99:631,0,2911 chrII 7211 . C T 660.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.258;DP=248;Dels=0.00;FS=104.345;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=43.53;MQ0=0;MQRankSum=-11.080;QD=2.66;ReadPosRankSum=1.293;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:145,103:248:99:690,0,3195 chrII 7217 . C A 676.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;DP=255;Dels=0.00;FS=79.700;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=43.11;MQ0=0;MQRankSum=-11.623;QD=2.65;ReadPosRankSum=0.857;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,108:255:99:706,0,3231 chrII 7273 . A G 508.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;DP=172;Dels=0.00;FS=4.229;HaplotypeScore=3.9667;MLEAC=1;MLEAF=0.500;MQ=38.01;MQ0=0;MQRankSum=-0.098;QD=2.95;ReadPosRankSum=3.128;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:130,42:172:99:538,0,1959 chrII 7510 . G T 1206.05 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=34.37;MQ0=5;QD=19.14;SB=-1.871e+02 GT:AD:DP:GQ:PL 1/1:0,51:61:99:1239,138,0 chrII 7549 . T C 782.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;DP=175;Dels=0.00;FS=16.213;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=20.22;MQ0=120;MQRankSum=1.575;QD=4.47;ReadPosRankSum=0.829;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:111,64:175:99:812,0,204 chrII 7683 . A G 490.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.468;DP=95;Dels=0.00;FS=12.763;HaplotypeScore=7.4662;MLEAC=1;MLEAF=0.500;MQ=25.81;MQ0=26;MQRankSum=0.724;QD=5.16;ReadPosRankSum=-0.129;SB=-2.230e+02 GT:AD:DP:GQ:PL 0/1:44,48:95:99:520,0,464 chrII 7866 . C A 758.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;DP=346;Dels=0.00;FS=36.923;HaplotypeScore=11.1099;MLEAC=1;MLEAF=0.500;MQ=19.38;MQ0=191;MQRankSum=0.239;QD=2.19;ReadPosRankSum=-3.474;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:283,63:346:99:788,0,1153 chrII 8139 . T C 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.736;DP=112;Dels=0.00;FS=9.733;HaplotypeScore=9.0731;MLEAC=1;MLEAF=0.500;MQ=22.17;MQ0=41;MQRankSum=0.636;QD=0.34;ReadPosRankSum=3.562;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,16:112:68:68,0,384 chrII 8161 . C G 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DP=112;Dels=0.00;FS=12.146;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.42;MQ0=35;MQRankSum=1.394;QD=0.47;ReadPosRankSum=-0.795;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,13:112:83:83,0,470 chrII 8174 . T A 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;DP=129;Dels=0.00;FS=12.179;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.35;MQ0=49;MQRankSum=1.298;QD=0.26;ReadPosRankSum=-4.653;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,14:129:64:64,0,494 chrII 8186 . C T 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.115;DP=134;Dels=0.00;FS=12.226;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=21.93;MQ0=54;MQRankSum=1.406;QD=0.31;ReadPosRankSum=-2.446;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,16:134:72:72,0,452 chrII 8187 . T C 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.370;DP=134;Dels=0.00;FS=12.226;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=21.78;MQ0=55;MQRankSum=1.406;QD=0.24;ReadPosRankSum=-2.009;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,15:134:62:62,0,463 chrII 9332 . G C 1301 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.423;DP=107;Dels=0.00;FS=17.482;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=20.86;MQ0=51;MQRankSum=1.670;QD=12.16;ReadPosRankSum=1.670;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:50,56:107:99:1334,128,0 chrII 10135 . C T 3485.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.0606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3485,372,0 chrII 10208 . C T 2637 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2670,279,0 chrII 10621 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.8540;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.44;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3399,354,0 chrII 11771 . A T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.45;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3367,354,0 chrII 13061 . G T 4686.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=16.3180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4686,499,0 chrII 15222 . T A 3720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.168;QD=25.83;ReadPosRankSum=1.660;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3720,393,0 chrII 15510 . G T 3654.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.97;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3654,390,0 chrII 15518 . A G 3803.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.45;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3803,408,0 chrII 16380 . C T 5494.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.4347;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.42;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5494,574,0 chrII 16392 . A G 5155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.9065;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.531;QD=22.81;ReadPosRankSum=1.686;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:5155,555,0 chrII 17986 . G T 2428 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.48;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2461,267,0 chrII 18004 . C T 2755 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9498;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.22;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2788,291,0 chrII 18127 . T A 4916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=204;Dels=0.00;FS=2.691;HaplotypeScore=17.4177;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.295;QD=24.10;ReadPosRankSum=2.425;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4916,526,0 chrII 18636 . T C 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=154;Dels=0.00;FS=7.531;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.136;QD=22.66;ReadPosRankSum=2.418;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3490,375,0 chrII 19516 . G T 4511.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.52;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4511,481,0 chrII 19967 . T C 4612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=194;Dels=0.00;FS=3.007;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.935;QD=23.77;ReadPosRankSum=2.386;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4612,487,0 chrII 21488 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.07;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3145,333,0 chrII 24209 . T C 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.472;QD=25.20;ReadPosRankSum=1.689;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:4032,429,0 chrII 26500 . A C 4031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.9023;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.188;QD=22.90;ReadPosRankSum=1.712;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4031,432,0 chrII 29490 . G T 4026.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;QD=24.55;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:4026,426,0 chrII 29530 . A C 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;MQRankSum=-1.601;QD=21.92;ReadPosRankSum=1.667;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2357,258,0 chrII 29726 . A G 2494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.316;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;MQRankSum=0.533;QD=21.88;ReadPosRankSum=0.751;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2527,255,0 chrII 29817 . T C 634 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=4;QD=15.85;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:2,38:40:78:667,78,0 chrII 30012 . C T 1754 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=25.51;MQ0=6;QD=17.90;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:6,92:98:99:1787,210,0 chrII 30210 . T C 349 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.40;MQ0=37;MQRankSum=1.552;QD=6.23;ReadPosRankSum=1.004;SB=-7.578e-03 GT:AD:DP:GQ:PL 1/1:1,51:56:39:382,39,0 chrII 32599 . C G 870.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.338;DP=462;Dels=0.00;FS=0.000;HaplotypeScore=8.2567;MLEAC=1;MLEAF=0.500;MQ=12.32;MQ0=280;MQRankSum=5.844;QD=1.88;ReadPosRankSum=0.279;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:385,71:462:99:900,0,475 chrII 32701 . A G 154.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.474;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.81;MQ0=208;MQRankSum=1.107;QD=0.70;ReadPosRankSum=-1.423;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:192,27:219:21:187,21,0 chrII 32785 . C T 1956.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.705;DP=570;Dels=0.00;FS=0.000;HaplotypeScore=13.8285;MLEAC=1;MLEAF=0.500;MQ=22.76;MQ0=154;MQRankSum=9.481;QD=3.43;ReadPosRankSum=-6.502;SB=-1.092e+03 GT:AD:DP:GQ:PL 0/1:417,152:570:99:1986,0,4056 chrII 32850 . T C 778.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;DP=405;Dels=0.00;FS=107.398;HaplotypeScore=19.8723;MLEAC=1;MLEAF=0.500;MQ=33.56;MQ0=133;MQRankSum=-10.226;QD=1.92;ReadPosRankSum=1.989;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:192,207:405:99:808,0,3871 chrII 33039 . T C 3707.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.037;DP=479;Dels=0.00;FS=7.626;HaplotypeScore=42.9069;MLEAC=1;MLEAF=0.500;MQ=35.84;MQ0=48;MQRankSum=4.987;QD=7.74;ReadPosRankSum=-0.033;SB=-2.037e+03 GT:AD:DP:GQ:PL 0/1:260,218:479:99:3707,0,2439 chrII 33391 . T C 1060.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.208;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=1;MLEAF=0.500;MQ=28.93;MQ0=8;MQRankSum=-2.551;QD=6.39;ReadPosRankSum=1.330;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,78:166:99:1090,0,881 chrII 33392 . A C 1074.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=1;MLEAF=0.500;MQ=28.93;MQ0=8;MQRankSum=-3.162;QD=6.36;ReadPosRankSum=1.883;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,77:169:99:1104,0,930 chrII 35631 . C T 68.51 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.38;MQ0=0;QD=17.13;SB=-4.875e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:12:101,12,0 chrII 35642 . G T 64.51 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.38;MQ0=0;QD=16.13;SB=-4.475e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:12:97,12,0 chrII 35660 . T C 64.51 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.38;MQ0=0;QD=16.13;SB=-4.575e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:12:97,12,0 chrII 35672 . G T 67.51 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.38;MQ0=0;QD=16.88;SB=-4.775e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:12:100,12,0 chrII 35688 . T G 66.51 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.38;MQ0=0;QD=16.63;SB=-4.775e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:12:99,12,0 chrII 36362 . A G 1904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=101;Dels=0.00;FS=4.603;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;MQRankSum=0.017;QD=18.85;ReadPosRankSum=1.664;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1937,207,0 chrII 36366 . A T 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=107;Dels=0.00;FS=4.853;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;MQRankSum=0.340;QD=17.94;ReadPosRankSum=1.635;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1953,207,0 chrII 36389 . T C 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=147;Dels=0.00;FS=2.710;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;MQRankSum=-1.162;QD=18.00;ReadPosRankSum=2.416;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2679,294,0 chrII 36492 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=17.98;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2137,228,0 chrII 36830 . A G 2028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=91;Dels=0.00;FS=5.544;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.674;QD=22.29;ReadPosRankSum=2.922;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:3,87:91:99:2061,225,0 chrII 37424 . G A 4520.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.42;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4520,498,0 chrII 37454 . C T 5108.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.60;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5108,535,0 chrII 37628 . C T 6162.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=23.3793;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.25;SB=-3.164e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:6162,655,0 chrII 38273 . C T 3628.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.32;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3628,390,0 chrII 38779 . C A 82.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=16.50;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:115,12,0 chrII 38800 . G A 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=8.92;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:58,6,0 chrII 39234 . A T 3006 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3039,324,0 chrII 40714 . T A 1728 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1761,180,0 chrII 49603 . A G 5809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=244;Dels=0.00;FS=7.306;HaplotypeScore=14.1411;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.515;QD=23.81;ReadPosRankSum=1.718;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,241:244:99:5809,633,0 chrII 51795 . T C 3831.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.09;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3831,408,0 chrII 56928 . C T 2894 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2927,312,0 chrII 59755 . T C 1043 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.68;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1076,117,0 chrII 64308 . G A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.8291;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3496,366,0 chrII 68834 . C T 4028.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=16.6289;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.28;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4028,435,0 chrII 71431 . G A 3852.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.75;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,191:195:99:3852,405,0 chrII 71601 . T C 2337 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2370,252,0 chrII 72663 . T C 5851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=305;Dels=0.00;FS=5.705;HaplotypeScore=27.8282;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-0.182;QD=19.18;ReadPosRankSum=2.917;SB=-3.451e+03 GT:AD:DP:GQ:PL 1/1:3,301:305:99:5851,639,0 chrII 73337 . T C 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.646;QD=21.59;ReadPosRankSum=1.703;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2602,276,0 chrII 73354 . C T 2991 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2392;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.67;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3024,327,0 chrII 73448 . A G 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=131;Dels=0.00;FS=7.205;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.804;QD=22.00;ReadPosRankSum=2.412;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2915,309,0 chrII 73470 . T C 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.506;QD=21.60;ReadPosRankSum=1.701;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2495,276,0 chrII 73697 . A C 6051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=253;Dels=0.00;FS=9.969;HaplotypeScore=19.3137;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.406;QD=23.92;ReadPosRankSum=2.381;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:2,249:253:99:6051,660,0 chrII 73758 . G T 7416.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=19.4821;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.47;SB=-2.925e+03 GT:AD:DP:GQ:PL 1/1:0,313:316:99:7416,805,0 chrII 73871 . C T 5158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=245;Dels=0.00;FS=3.892;HaplotypeScore=6.4151;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.605;QD=21.05;ReadPosRankSum=-0.827;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5158,541,0 chrII 73943 . G A 5122.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=18.0211;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.33;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5122,552,0 chrII 74102 . C T 3696.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3696,399,0 chrII 74189 . T C 5130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.0305;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.277;QD=23.11;ReadPosRankSum=2.405;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:5130,564,0 chrII 74688 . C T 5043.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=22.7436;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.41;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5043,543,0 chrII 74853 . A T 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=150;Dels=0.01;FS=8.943;HaplotypeScore=9.0311;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.957;QD=22.95;ReadPosRankSum=3.400;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:4,145:149:99:3442,375,0 chrII 74920 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.03;FS=0.000;HaplotypeScore=32.7612;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.23;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2123,228,0 chrII 75097 . T A 1464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.269;DP=113;Dels=0.00;FS=7.974;HaplotypeScore=32.1303;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;MQRankSum=0.183;QD=12.96;ReadPosRankSum=3.240;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:5,108:113:99:1497,165,0 chrII 75103 . T A 671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.342;DP=104;Dels=0.00;FS=22.741;HaplotypeScore=10.5024;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;MQRankSum=-0.295;QD=6.45;ReadPosRankSum=2.492;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:15,89:104:41:704,41,0 chrII 75163 . G A 2391 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.94;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2424,255,0 chrII 75564 . C T 4970.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.6903;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.22;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4970,517,0 chrII 76203 . A G 3691.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.3614;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.53;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3691,411,0 chrII 76212 . C T 3982.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.11;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3982,420,0 chrII 76298 . G A 7133.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=7.3481;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=24.10;SB=-3.009e+03 GT:AD:DP:GQ:PL 1/1:0,296:296:99:7133,736,0 chrII 76314 . T G 5996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=285;Dels=0.00;FS=5.315;HaplotypeScore=10.4088;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.370;QD=21.04;ReadPosRankSum=2.954;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:3,282:285:99:5996,678,0 chrII 76824 . A G 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=149;Dels=0.00;FS=3.378;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.679;QD=23.24;ReadPosRankSum=1.709;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3463,390,0 chrII 76869 . G A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=11.8874;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.63;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3568,372,0 chrII 76947 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.39;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3488,378,0 chrII 77223 . T C 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=112;Dels=0.00;FS=6.218;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=-1.703;QD=17.47;ReadPosRankSum=2.406;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1990,222,0 chrII 77238 . G A 2331 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.27;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2364,249,0 chrII 77239 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=20.74;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2439,258,0 chrII 77259 . G T 2466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6494;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.615;QD=19.89;ReadPosRankSum=0.894;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2499,264,0 chrII 79068 . T C 4537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=190;Dels=0.00;FS=3.031;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.092;QD=23.88;ReadPosRankSum=2.346;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4537,495,0 chrII 80202 . C T 446 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:51:479,51,0 chrII 80873 . C A 2169 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2202,231,0 chrII 83698 . C T 5321.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=15.2205;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.34;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5321,582,0 chrII 84052 . G A 6083.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.13;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:6083,643,0 chrII 84532 . T G 4377.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.45;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4377,504,0 chrII 89547 . A G 4785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.028;DP=195;Dels=0.00;FS=23.441;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.815;QD=24.54;ReadPosRankSum=4.102;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:6,187:195:99:4785,513,0 chrII 92027 . C T 1574 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.49;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1607,171,0 chrII 93811 . T C 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=133;Dels=0.00;FS=2.988;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.117;QD=23.85;ReadPosRankSum=2.357;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3205,345,0 chrII 95085 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2878,315,0 chrII 98153 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.6666;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3399,354,0 chrII 102053 . T C 7093.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=371;Dels=0.00;FS=8.997;HaplotypeScore=24.5118;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.188;QD=19.12;ReadPosRankSum=2.403;SB=-3.395e+03 GT:AD:DP:GQ:PL 1/1:2,369:371:99:7093,774,0 chrII 102728 . G A 5243.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5243,553,0 chrII 103646 . C T 2369 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.42;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2402,264,0 chrII 103652 . C T 2410 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.78;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2443,258,0 chrII 104641 . T C 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=2.966;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.269;QD=24.47;ReadPosRankSum=2.349;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2431,264,0 chrII 104669 . G A 2396 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.60;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2429,267,0 chrII 104975 . T C 4092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=16.2746;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.408;QD=23.52;ReadPosRankSum=1.712;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:4092,435,0 chrII 105154 . A G 3326.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.78;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3326,357,0 chrII 105289 . A G 2076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.657;DP=116;Dels=0.00;FS=11.795;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=-0.775;QD=17.90;ReadPosRankSum=3.494;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:5,111:116:99:2109,231,0 chrII 105299 . C T 1954 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=17.76;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1987,216,0 chrII 105303 . C A 1845 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.6132;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=15.77;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1878,207,0 chrII 105449 . A G 3211.99 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.52;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3245,354,0 chrII 107069 . C A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.1234;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.09;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3822,405,0 chrII 108254 . G A 5113.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=15.4717;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5113,532,0 chrII 108452 . T A 4424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.742;QD=25.28;ReadPosRankSum=1.712;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4424,460,0 chrII 108764 . T C 3359.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3359,363,0 chrII 109094 . T C 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=127;Dels=0.00;FS=3.027;HaplotypeScore=10.7283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.576;QD=23.74;ReadPosRankSum=2.411;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:3048,336,0 chrII 109165 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.0073;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.84;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3358,363,0 chrII 109608 . C T 4276.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.1170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4276,459,0 chrII 111451 . T C 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.543;DP=188;Dels=0.00;FS=5.382;HaplotypeScore=17.2156;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.059;QD=22.00;ReadPosRankSum=2.930;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:3,184:188:99:4136,453,0 chrII 112335 . C A 2771 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2804,300,0 chrII 113678 . C T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.7373;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.39;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3626,384,0 chrII 114766 . T C 5836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=241;Dels=0.00;FS=2.812;HaplotypeScore=15.1694;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.936;QD=24.22;ReadPosRankSum=2.429;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:2,238:241:99:5836,634,0 chrII 115774 . G A 5209.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.79;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5209,553,0 chrII 116038 . C T 4516.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=25.09;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4516,472,0 chrII 116084 . C T 4220.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.3038;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.45;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4220,447,0 chrII 116102 . G A 4232.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.2105;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=22.63;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4232,445,0 chrII 116106 . T C 3974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=3.634;HaplotypeScore=6.1028;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-1.028;QD=21.14;ReadPosRankSum=1.658;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:3974,429,0 chrII 116143 . G A 4570.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.74;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4570,484,0 chrII 116518 . C T 4848.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.2728;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.76;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4848,514,0 chrII 116536 . G A 4918.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.20;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4918,526,0 chrII 116701 . C T 4854.01 SnpCluster AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=21.57;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4854,534,0 chrII 116704 . T C 4718.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.389;DP=226;Dels=0.00;FS=14.641;HaplotypeScore=6.6971;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;MQRankSum=-1.440;QD=20.88;ReadPosRankSum=3.381;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:4,217:226:99:4718,507,0 chrII 116707 . A T 4901.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=229;Dels=0.00;FS=2.928;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=-0.884;QD=21.40;ReadPosRankSum=2.417;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:4901,534,0 chrII 116832 . A G 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=192;Dels=0.00;FS=8.085;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-0.096;QD=20.24;ReadPosRankSum=2.411;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:3887,423,0 chrII 116848 . G T 3316.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=156.5972;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;QD=18.32;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3316,348,0 chrII 116850 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=164.0516;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=18.45;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3414,363,0 chrII 116939 . G A 5090.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=20.36;SB=-3.022e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5090,558,0 chrII 116947 . T G 5011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=-0.202;QD=20.71;ReadPosRankSum=1.689;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:1,239:242:99:5011,549,0 chrII 117297 . A G 70.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.307;DP=174;Dels=0.00;FS=7.198;HaplotypeScore=149.6100;MLEAC=1;MLEAF=0.500;MQ=54.87;MQ0=0;MQRankSum=0.824;QD=0.40;ReadPosRankSum=-4.672;SB=-1.600e+02 GT:AD:DP:GQ:PL 0/1:164,10:174:87:100,0,87 chrII 117298 . A G 62.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.197;DP=173;Dels=0.00;FS=7.216;HaplotypeScore=2.7007;MLEAC=1;MLEAF=0.500;MQ=54.84;MQ0=0;MQRankSum=0.075;QD=0.36;ReadPosRankSum=4.966;SB=-1.943e+03 GT:AD:DP:GQ:PL 0/1:10,163:173:63:92,0,63 chrII 117312 . T A 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=179;Dels=0.00;FS=3.608;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=1.035;QD=21.12;ReadPosRankSum=1.713;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3780,399,0 chrII 117595 . T C 5095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.8255;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.000;QD=24.50;ReadPosRankSum=1.699;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:5095,549,0 chrII 117972 . G A 4944.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=20.6937;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.00;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4944,540,0 chrII 118370 . A G 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=157;Dels=0.00;FS=2.936;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.843;QD=22.61;ReadPosRankSum=2.371;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3550,384,0 chrII 118457 . C T 5378.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.69;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5378,591,0 chrII 118818 . C A 4249.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.8881;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.35;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4249,451,0 chrII 118921 . C T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.70;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3555,375,0 chrII 118953 . C T 2590 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.56;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2623,282,0 chrII 118959 . C T 2473 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=20.78;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2506,267,0 chrII 119103 . T G 2425 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8813;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.25;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2458,267,0 chrII 119247 . A C 1057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=47;Dels=0.00;FS=8.491;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.818;QD=22.49;ReadPosRankSum=2.345;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:2,45:47:99:1090,117,0 chrII 119499 . A G 5204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=224;Dels=0.00;FS=5.721;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.670;QD=23.23;ReadPosRankSum=1.686;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:5204,585,0 chrII 119604 . A G 5025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=14.3361;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.037;QD=19.63;ReadPosRankSum=1.718;SB=-3.189e+03 GT:AD:DP:GQ:PL 1/1:1,253:256:99:5025,558,0 chrII 119739 . A G 4740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=217;Dels=0.00;FS=2.569;HaplotypeScore=18.4339;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.744;QD=21.84;ReadPosRankSum=2.930;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:3,213:217:99:4740,513,0 chrII 120170 . G A 3167 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.46;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3200,339,0 chrII 120369 . G C 2762 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=23.41;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2795,303,0 chrII 120427 . C T 2622 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=23.62;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2655,285,0 chrII 120430 . G A 2715 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=22.82;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2748,288,0 chrII 120437 . C A 2454 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=21.53;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2487,270,0 chrII 120585 . A G 2791 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.26;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2824,318,0 chrII 120630 . G A 3204 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=14.1219;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.27;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3237,334,0 chrII 120701 . A G 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.6721;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.316;QD=21.18;ReadPosRankSum=1.666;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3367,366,0 chrII 120888 . G C 2452 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.61;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2485,276,0 chrII 121101 . C T 2074 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2107,222,0 chrII 121194 . G A 3009 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3042,315,0 chrII 121421 . G A 3119 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3152,333,0 chrII 121530 . C T 2476 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.9348;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.63;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2509,270,0 chrII 121589 . T C 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=3.076;HaplotypeScore=10.5990;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=1.318;QD=22.62;ReadPosRankSum=1.680;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3087,330,0 chrII 121809 . C T 2678 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.8482;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.60;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2711,288,0 chrII 121848 . C T 2993 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.7025;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=23.75;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3026,321,0 chrII 121859 . T C 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=136;Dels=0.00;FS=3.076;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.595;QD=21.43;ReadPosRankSum=1.680;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2947,324,0 chrII 121896 . C T 3166 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.11;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3199,336,0 chrII 121908 . G A 2957 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.82;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2990,315,0 chrII 123008 . G A 5110.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.23;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5110,558,0 chrII 123103 . T A 4835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.331;DP=230;Dels=0.00;FS=4.272;HaplotypeScore=14.5304;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=1.461;QD=21.02;ReadPosRankSum=1.687;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:4835,485,0 chrII 123311 . C T 4725.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.9114;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=23.51;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:4725,507,0 chrII 123320 . T C 4119.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.79;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4119,465,0 chrII 123339 . C T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.43;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3656,390,0 chrII 123764 . G A 4258.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.89;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4258,459,0 chrII 123800 . C T 3014 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.9412;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.83;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3047,318,0 chrII 123940 . C T 4177.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.28;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4177,438,0 chrII 124174 . C G 3834.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.96;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3834,414,0 chrII 124193 . C A 3669.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.65;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3669,390,0 chrII 124286 . C A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.36;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3377,363,0 chrII 124505 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.87;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3747,417,0 chrII 124574 . T C 3211.99 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.13;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3245,357,0 chrII 124616 . C T 2509 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.03;FS=0.000;HaplotypeScore=10.1761;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=17.79;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2542,267,0 chrII 124617 . A G 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=143;Dels=0.03;FS=3.659;HaplotypeScore=10.9648;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-1.429;QD=17.13;ReadPosRankSum=1.707;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2482,270,0 chrII 124932 . T C 4923.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.58;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4923,537,0 chrII 124959 . A C 4585.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.3394;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=22.48;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4585,481,0 chrII 124966 . A T 4548.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.2489;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.96;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4548,481,0 chrII 125022 . A G 3972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.928;QD=21.47;ReadPosRankSum=1.713;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:1,180:185:99:3972,423,0 chrII 125552 . T C 3714.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.1517;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.51;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3714,405,0 chrII 126130 . C T 1394 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1427,153,0 chrII 126263 . T C 2901 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=17.3330;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.15;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2934,321,0 chrII 126335 . G A 3180 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3213,360,0 chrII 126692 . G T 2899 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2932,312,0 chrII 126836 . G A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.91;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3825,414,0 chrII 127964 . C T 4291.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.7136;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.66;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4291,462,0 chrII 128257 . A G 5675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=13.2445;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=1.076;QD=20.12;ReadPosRankSum=1.695;SB=-3.437e+03 GT:AD:DP:GQ:PL 1/1:1,280:282:99:5675,615,0 chrII 128423 . G A 6053.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=13.1830;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=23.02;SB=-3.360e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:6053,649,0 chrII 128479 . T G 4251.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=20.94;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4251,459,0 chrII 128480 . T A 4421.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=22.22;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4421,463,0 chrII 128547 . A G 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=163;Dels=0.00;FS=2.983;HaplotypeScore=14.3970;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.614;QD=22.12;ReadPosRankSum=2.389;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3606,384,0 chrII 128669 . A G 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.740;DP=202;Dels=0.00;FS=5.939;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.373;QD=19.27;ReadPosRankSum=2.924;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:3,194:202:99:3893,435,0 chrII 129254 . C T 4541.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.0169;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.37;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4541,481,0 chrII 129308 . T A 5130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=226;Dels=0.00;FS=3.856;HaplotypeScore=14.4009;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.594;QD=22.70;ReadPosRankSum=1.671;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:5130,561,0 chrII 129347 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.18;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4034,426,0 chrII 129386 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=152;Dels=0.00;FS=10.414;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.188;QD=21.22;ReadPosRankSum=2.913;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:3,147:152:99:3258,354,0 chrII 129437 . G A 4278.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.77;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4278,459,0 chrII 129668 . C T 4239.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.8294;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.31;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4239,465,0 chrII 129692 . C T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.3360;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.77;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4005,421,0 chrII 129791 . T A 6428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=12.6367;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.948;QD=22.40;ReadPosRankSum=1.720;SB=-3.455e+03 GT:AD:DP:GQ:PL 1/1:1,286:287:99:6428,711,0 chrII 130349 . G A 5333.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.49;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5333,571,0 chrII 130370 . G T 5009.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.31;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5009,537,0 chrII 130407 . A G 4142.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=19.0014;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.72;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,206:210:99:4142,459,0 chrII 130769 . C T 3888.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,169:174:99:3888,423,0 chrII 130988 . T C 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=164;Dels=0.00;FS=6.263;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.202;QD=23.14;ReadPosRankSum=2.420;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3795,414,0 chrII 131020 . A G 4329.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.5917;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.27;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4329,468,0 chrII 131051 . G A 4604.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.46;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4604,513,0 chrII 131313 . T C 5132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=218;Dels=0.00;FS=7.909;HaplotypeScore=12.5250;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.850;QD=23.54;ReadPosRankSum=2.359;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:5132,552,0 chrII 131652 . G A 4583.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.32;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4583,481,0 chrII 131705 . G A 4089.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.8002;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.34;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4089,427,0 chrII 131783 . G A 4224.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.71;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4224,459,0 chrII 132280 . T C 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=144;Dels=0.00;FS=3.036;HaplotypeScore=8.9816;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.263;QD=23.09;ReadPosRankSum=2.398;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3325,366,0 chrII 132482 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.2795;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.56;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3407,360,0 chrII 132564 . T C 3204.99 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.5702;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=17.71;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3238,369,0 chrII 132576 . G A 3195 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.3155;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=17.09;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3228,345,0 chrII 132654 . T C 4031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=3.190;HaplotypeScore=7.1983;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.151;QD=23.30;ReadPosRankSum=1.712;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4031,435,0 chrII 132945 . A G 5260.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.93;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5260,570,0 chrII 132975 . T A 4600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;MQRankSum=0.645;QD=20.63;ReadPosRankSum=1.670;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:4600,504,0 chrII 133163 . G C 6665.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=17.0632;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=23.14;SB=-3.191e+03 GT:AD:DP:GQ:PL 1/1:0,284:288:99:6665,718,0 chrII 133239 . C T 6547.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=18.3244;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=23.81;SB=-3.101e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:6547,700,0 chrII 133595 . A G 4276.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.36;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4276,471,0 chrII 133612 . A G 3775.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.01;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=20.08;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3775,411,0 chrII 133742 . C T 4321.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.7015;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.16;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,191:195:99:4321,445,0 chrII 133779 . C T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.08;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3555,367,0 chrII 133938 . A C 681 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=60.94;MQ0=0;QD=20.64;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,32:33:78:714,78,0 chrII 134090 . A G 1597 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.18;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1630,177,0 chrII 135183 . A C 4341.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.46;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4341,480,0 chrII 135214 . G A 4546.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.62;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4546,475,0 chrII 135402 . C T 3730.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.61;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3730,390,0 chrII 135630 . T A 3077 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.4060;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=22.14;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3110,342,0 chrII 135667 . A C 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=135;Dels=0.00;FS=8.008;HaplotypeScore=13.1340;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.466;QD=23.84;ReadPosRankSum=2.413;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3251,351,0 chrII 135827 . G A 2209 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.04;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2242,234,0 chrII 135898 . A T 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.481;QD=21.26;ReadPosRankSum=1.684;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3095,339,0 chrII 135923 . C T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.82;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3446,375,0 chrII 136398 . T A 2748 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.03;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=22.71;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2781,297,0 chrII 136582 . C G 1846 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1879,201,0 chrII 136632 . T G 1713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.522;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.661;QD=23.79;ReadPosRankSum=3.699;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:5,67:72:99:1746,189,0 chrII 136840 . A T 4532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.032;DP=192;Dels=0.00;FS=16.080;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.005;QD=23.60;ReadPosRankSum=3.323;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:4,188:192:99:4532,486,0 chrII 137272 . T C 4712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=19.3870;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.466;QD=16.89;ReadPosRankSum=1.645;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:1,278:279:99:4712,519,0 chrII 137341 . C T 4217.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=16.7518;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.27;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4217,442,0 chrII 137745 . A G 2349 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2382,276,0 chrII 137801 . T C 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.049;QD=25.19;ReadPosRankSum=1.683;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1796,192,0 chrII 137859 . T G 1919 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=21.81;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1952,210,0 chrII 137868 . A G 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=99;Dels=0.00;FS=9.120;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.884;QD=20.27;ReadPosRankSum=1.591;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2040,225,0 chrII 137948 . A G 3901.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.36;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3901,414,0 chrII 138209 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.9449;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.58;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2297,246,0 chrII 138346 . T C 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.230;QD=23.96;ReadPosRankSum=1.701;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2741,294,0 chrII 138529 . G T 5203.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=25.63;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5203,556,0 chrII 138734 . C T 4483.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.7831;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4483,478,0 chrII 138835 . A G 4467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=191;Dels=0.00;FS=3.032;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.382;QD=23.39;ReadPosRankSum=2.372;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4467,483,0 chrII 139079 . T G 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=178;Dels=0.00;FS=3.534;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.181;QD=22.32;ReadPosRankSum=1.712;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:3973,444,0 chrII 140021 . C T 3784.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.80;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3784,399,0 chrII 140061 . T C 3720.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.28;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3720,405,0 chrII 140131 . T C 3270.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.8449;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.24;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3270,351,0 chrII 140174 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.99;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3098,330,0 chrII 140383 . A G 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=162;Dels=0.00;FS=9.618;HaplotypeScore=14.4806;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.554;QD=23.33;ReadPosRankSum=2.931;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:3,157:162:99:3780,426,0 chrII 140643 . C A 4673.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.37;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4673,490,0 chrII 140863 . G T 3052 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=20.48;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3085,339,0 chrII 140880 . C T 3004 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=4.7440;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.72;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3037,321,0 chrII 140963 . C T 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=198;Dels=0.00;FS=7.405;HaplotypeScore=4.4782;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=1.323;QD=20.59;ReadPosRankSum=2.019;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:2,192:198:99:4076,435,0 chrII 140964 . T C 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=194;Dels=0.01;FS=7.482;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.225;QD=20.80;ReadPosRankSum=2.424;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4036,435,0 chrII 141015 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=22.07;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3575,375,0 chrII 141175 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.01;FS=0.000;HaplotypeScore=2.5027;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=19.44;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3635,393,0 chrII 141176 . G A 3664.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=19.39;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3664,411,0 chrII 141191 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=17.96;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3610,396,0 chrII 141207 . A G 2846 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=14.52;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:2879,318,0 chrII 141215 . C T 2743 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=14.21;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:2776,309,0 chrII 141553 . C T 3673.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.32;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3673,384,0 chrII 141579 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.8116;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.05;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3512,381,0 chrII 141987 . A T 2120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.130;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.539;QD=21.20;ReadPosRankSum=2.351;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2153,234,0 chrII 142133 . C T 2285 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.7702;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.16;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2318,249,0 chrII 142181 . C T 2273 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.85;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2306,252,0 chrII 142186 . G A 2355 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.41;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2388,252,0 chrII 142208 . G A 2243 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.4718;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.50;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2276,237,0 chrII 142364 . A G 5009.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.80;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5009,543,0 chrII 142625 . C T 4160.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.91;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4160,453,0 chrII 142804 . C G 4469.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.29;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4469,480,0 chrII 142980 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.4063;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.14;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3404,363,0 chrII 143298 . A T 2124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=92;Dels=0.00;FS=3.303;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-1.356;QD=23.09;ReadPosRankSum=1.619;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2157,231,0 chrII 143327 . C T 1901 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=17.77;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1934,213,0 chrII 143335 . C G 1959 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=17.97;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1992,213,0 chrII 143356 . T G 2029 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.4676;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=17.34;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2062,222,0 chrII 143491 . T C 2186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.488;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.722;QD=22.54;ReadPosRankSum=1.624;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2219,237,0 chrII 143613 . A G 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=1.526;QD=21.37;ReadPosRankSum=1.698;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,100:103:99:2234,240,0 chrII 143759 . A T 771 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.36;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:90:804,90,0 chrII 144151 . G A 2912 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.00;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2945,306,0 chrII 144820 . T G 4193.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.73;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4193,474,0 chrII 144853 . G A 4036.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.7474;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.82;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4036,441,0 chrII 144937 . T C 5865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.727;DP=247;Dels=0.00;FS=11.431;HaplotypeScore=15.9134;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.187;QD=23.74;ReadPosRankSum=3.772;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:5,241:247:99:5865,631,0 chrII 144991 . A G 5508.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5508,589,0 chrII 145108 . T C 4333.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.55;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4333,477,0 chrII 145474 . A G 5295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=252;Dels=0.00;FS=9.189;HaplotypeScore=11.4759;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-1.333;QD=21.01;ReadPosRankSum=2.924;SB=-3.247e+03 GT:AD:DP:GQ:PL 1/1:3,247:252:99:5295,568,0 chrII 145486 . A G 5297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=255;Dels=0.00;FS=9.128;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.367;QD=20.77;ReadPosRankSum=3.427;SB=-3.250e+03 GT:AD:DP:GQ:PL 1/1:4,250:255:99:5297,571,0 chrII 145980 . G T 992 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.84;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1025,111,0 chrII 146099 . C T 1183 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=15.57;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1216,135,0 chrII 146107 . C A 975 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=39.10;MQ0=0;QD=12.66;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1008,111,0 chrII 146113 . A T 1017 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;QD=12.11;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1050,117,0 chrII 146114 . C T 1028 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=39.74;MQ0=0;QD=12.39;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1061,120,0 chrII 146129 . T A 1159 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=40.25;MQ0=0;QD=12.88;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1192,129,0 chrII 146169 . G A 2222 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=18.99;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2255,240,0 chrII 146217 . T G 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.478;QD=24.98;ReadPosRankSum=1.709;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3747,402,0 chrII 146248 . A G 3755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=4.997;HaplotypeScore=9.5380;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.460;QD=23.47;ReadPosRankSum=1.666;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3755,408,0 chrII 146312 . C G 4023.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=22.10;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4023,456,0 chrII 146333 . G A 4389.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.7408;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=21.73;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4389,465,0 chrII 146444 . C T 5562.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.8253;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.47;SB=-3.057e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5562,595,0 chrII 146609 . G A 4699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=200;Dels=0.00;FS=4.949;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.554;QD=23.50;ReadPosRankSum=-1.697;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4699,499,0 chrII 146672 . G T 2978 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.58;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3011,324,0 chrII 146699 . G A 3170 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.97;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3203,336,0 chrII 146992 . C T 3135 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.12;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3168,330,0 chrII 147197 . A T 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.260;QD=24.55;ReadPosRankSum=1.687;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3781,397,0 chrII 147484 . A G 3218.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=16.8408;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.50;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3251,351,0 chrII 148172 . C T 6117.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.28;SB=-3.222e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:6117,640,0 chrII 148327 . A T 5516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=239;Dels=0.00;FS=3.572;HaplotypeScore=15.2330;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.616;QD=23.08;ReadPosRankSum=1.616;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5516,589,0 chrII 148429 . C T 5328.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.39;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5328,591,0 chrII 148600 . T A 5062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=203;Dels=0.00;FS=3.011;HaplotypeScore=13.9929;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.699;QD=24.94;ReadPosRankSum=2.304;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:5062,523,0 chrII 149026 . C T 3557.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6019;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.71;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3557,384,0 chrII 149400 . T C 5244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.082;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=21.5488;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=1;MQRankSum=0.037;QD=22.03;ReadPosRankSum=1.904;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:3,232:238:99:5244,562,0 chrII 149696 . A C 4678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=195;Dels=0.00;FS=2.839;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.686;QD=23.99;ReadPosRankSum=2.411;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:2,191:195:99:4678,501,0 chrII 149872 . T C 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8567;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.073;QD=24.43;ReadPosRankSum=1.708;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3493,381,0 chrII 150200 . A T 1559 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1592,165,0 chrII 150422 . A T 2302 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2335,252,0 chrII 150513 . C T 2102 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2135,228,0 chrII 150781 . T C 3391.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.74;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3391,375,0 chrII 151212 . A T 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=16.2318;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-1.066;QD=21.95;ReadPosRankSum=1.705;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2909,312,0 chrII 151397 . T C 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=1.052;QD=20.95;ReadPosRankSum=1.711;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3519,384,0 chrII 151407 . G T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.63;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3633,381,0 chrII 151574 . T C 4371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=185;Dels=0.00;FS=6.061;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.299;QD=23.63;ReadPosRankSum=2.940;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:4371,465,0 chrII 151682 . A G 3843.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.84;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3843,441,0 chrII 151709 . G A 3956.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.18;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3956,429,0 chrII 151724 . G A 4071.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.88;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4071,441,0 chrII 151946 . A G 4504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=193;Dels=0.00;FS=3.078;HaplotypeScore=9.0809;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.888;QD=23.34;ReadPosRankSum=1.714;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4504,486,0 chrII 151976 . G A 4209.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.88;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4209,459,0 chrII 152073 . C T 5177.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.2701;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.75;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5177,553,0 chrII 152204 . A G 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.172;DP=135;Dels=0.00;FS=3.023;HaplotypeScore=9.9595;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.490;QD=21.03;ReadPosRankSum=2.413;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:2,131:135:99:2872,321,0 chrII 152451 . T C 3901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.3054;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.622;QD=25.01;ReadPosRankSum=1.710;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3901,423,0 chrII 152612 . A G 3953.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.21;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3953,420,0 chrII 152624 . C T 3980.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.87;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3980,418,0 chrII 152750 . A C 3016 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.58;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3049,345,0 chrII 152894 . A G 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=181;Dels=0.00;FS=7.456;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.020;QD=23.23;ReadPosRankSum=2.395;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4205,450,0 chrII 152949 . A G 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=3.865;HaplotypeScore=12.7967;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.907;QD=23.46;ReadPosRankSum=1.650;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3964,432,0 chrII 153007 . C T 3315.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3315,360,0 chrII 153732 . T A 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.332;QD=23.53;ReadPosRankSum=1.688;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1868,195,0 chrII 153787 . T A 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.6149;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.972;QD=23.27;ReadPosRankSum=1.704;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2895,315,0 chrII 154001 . A C 3123 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.2923;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.84;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3156,348,0 chrII 154142 . G A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.49;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3735,402,0 chrII 154160 . A G 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.8068;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.895;QD=22.08;ReadPosRankSum=1.686;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,148:152:99:3356,366,0 chrII 154235 . C T 3337.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.28;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3337,351,0 chrII 154740 . A G 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=132;Dels=0.00;FS=2.693;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.177;QD=22.12;ReadPosRankSum=2.412;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2953,318,0 chrII 154799 . G A 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.475;DP=137;Dels=0.00;FS=3.310;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.270;QD=21.59;ReadPosRankSum=1.270;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2991,330,0 chrII 155354 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.650;QD=21.70;ReadPosRankSum=1.710;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3493,387,0 chrII 155527 . T A 2860 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.70;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2893,309,0 chrII 155739 . T G 2079 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=24.46;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2112,225,0 chrII 155780 . G A 2249 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.49;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2282,237,0 chrII 155783 . A G 2212 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.48;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2245,240,0 chrII 156194 . C T 2175 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.14;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2208,237,0 chrII 156203 . C A 2389 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=20.96;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2422,258,0 chrII 156652 . C T 4481.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:4481,504,0 chrII 157062 . A G 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.191;DP=147;Dels=0.00;FS=18.372;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.322;QD=24.10;ReadPosRankSum=3.373;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:4,140:147:99:3543,384,0 chrII 157788 . G C 4776.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.9862;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.76;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4776,511,0 chrII 158114 . A G 7964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=319;Dels=0.00;FS=9.407;HaplotypeScore=13.0617;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.984;QD=24.97;ReadPosRankSum=2.372;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:2,316:319:99:7964,871,0 chrII 158591 . C T 3360.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=24.89;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3360,357,0 chrII 158728 . A C 3685.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2756;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.47;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3685,402,0 chrII 158800 . G T 4143.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=18.50;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4143,450,0 chrII 158803 . A G 4341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=237;Dels=0.00;FS=4.347;HaplotypeScore=3.3225;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.785;QD=18.32;ReadPosRankSum=1.688;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:1,233:237:99:4341,471,0 chrII 158953 . G A 7702.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=13.8459;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.77;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:0,323:324:99:7702,826,0 chrII 159079 . C T 7740.01 PASS AC=2;AF=1.00;AN=2;DP=359;Dels=0.00;FS=0.000;HaplotypeScore=21.7019;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.56;SB=-4.494e+03 GT:AD:DP:GQ:PL 1/1:0,356:359:99:7740,823,0 chrII 159139 . T G 6813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=342;Dels=0.00;FS=3.624;HaplotypeScore=11.3065;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.954;QD=19.92;ReadPosRankSum=1.691;SB=-3.838e+03 GT:AD:DP:GQ:PL 1/1:1,334:342:99:6813,742,0 chrII 159161 . G T 7120.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=9.8307;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.40;SB=-4.081e+03 GT:AD:DP:GQ:PL 1/1:0,347:349:99:7120,757,0 chrII 159797 . C T 4489.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=24.13;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4489,478,0 chrII 159857 . C G 3189 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.28;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3222,348,0 chrII 159891 . A C 3176 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.1217;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.81;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3209,345,0 chrII 159926 . C A 3532.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9692;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3532,390,0 chrII 160143 . T G 3329.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3329,366,0 chrII 160403 . G T 6672.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=14.3911;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.37;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:6672,709,0 chrII 160810 . T G 6651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=15.4006;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=1.195;QD=23.42;ReadPosRankSum=1.464;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:1,283:284:99:6651,712,0 chrII 160970 . T A 4066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=190;Dels=0.00;FS=4.527;HaplotypeScore=9.4186;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.711;QD=21.40;ReadPosRankSum=1.659;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4066,424,0 chrII 161065 . G A 3556.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.1205;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.79;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3556,396,0 chrII 161297 . G A 2163 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.85;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2196,231,0 chrII 161484 . T G 1561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.562;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9412;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.140;QD=20.81;ReadPosRankSum=1.217;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1594,171,0 chrII 161512 . T C 2286 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.63;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2319,249,0 chrII 161687 . T C 3446.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.72;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3446,372,0 chrII 161757 . G A 3882.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.84;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3882,405,0 chrII 161840 . T C 3006 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.48;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3039,324,0 chrII 162251 . A G 5573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.776;DP=257;Dels=0.00;FS=6.038;HaplotypeScore=22.8282;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.437;QD=21.68;ReadPosRankSum=2.933;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:3,253:257:99:5573,624,0 chrII 162420 . T C 4971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=220;Dels=0.00;FS=7.600;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.006;QD=22.60;ReadPosRankSum=2.405;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:4971,540,0 chrII 162773 . T C 1357 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.56;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1390,162,0 chrII 163080 . G A 5603.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.3604;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=28.02;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5603,577,0 chrII 163180 . C T 5152.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.31;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5152,549,0 chrII 163349 . G T 6182.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=24.1633;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.89;SB=-3.279e+03 GT:AD:DP:GQ:PL 1/1:0,294:296:99:6182,670,0 chrII 163497 . A G 6463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=282;Dels=0.00;FS=7.890;HaplotypeScore=15.1251;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.126;QD=22.92;ReadPosRankSum=2.397;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:2,280:282:99:6463,697,0 chrII 163787 . A C 6363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=21.2831;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.288;QD=22.64;ReadPosRankSum=1.707;SB=-3.155e+03 GT:AD:DP:GQ:PL 1/1:1,280:281:99:6363,705,0 chrII 163854 . T C 5389.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=17.0081;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.13;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:1,230:233:99:5389,574,0 chrII 163892 . C T 4405.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.71;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4405,483,0 chrII 163967 . A G 3893.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.50;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3893,420,0 chrII 163989 . G A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.4564;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.75;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3545,387,0 chrII 164378 . T C 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.406;QD=21.60;ReadPosRankSum=0.509;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1869,201,0 chrII 164419 . T C 1512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=4.459;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.422;QD=22.57;ReadPosRankSum=1.681;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1545,174,0 chrII 164827 . A G 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=136;Dels=0.00;FS=3.595;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.090;QD=21.85;ReadPosRankSum=1.629;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3005,324,0 chrII 164828 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.72;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2943,321,0 chrII 164914 . A G 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.224;QD=23.45;ReadPosRankSum=1.709;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3447,375,0 chrII 164995 . T G 2216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.3090;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-0.394;QD=17.18;ReadPosRankSum=1.260;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:3,125:129:99:2249,246,0 chrII 165048 . C T 2964 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.5841;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=18.88;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2997,324,0 chrII 165107 . A G 3688.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.3350;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.08;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3688,420,0 chrII 165259 . G A 4114.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.7703;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.34;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4114,438,0 chrII 165525 . G A 4117.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.59;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4117,450,0 chrII 165729 . T C 2663 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.48;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,126:130:99:2696,303,0 chrII 165877 . T C 1304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=67;Dels=0.00;FS=4.973;HaplotypeScore=5.8839;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-1.575;QD=19.46;ReadPosRankSum=1.680;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1337,141,0 chrII 166019 . T C 1335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=-0.467;QD=20.54;ReadPosRankSum=1.677;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:1,62:65:99:1368,150,0 chrII 166311 . C T 1218 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.03;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1251,132,0 chrII 166544 . G A 2073 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=27.64;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2106,222,0 chrII 166572 . C T 2080 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=26.00;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2113,219,0 chrII 166703 . G A 4391.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.86;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4391,468,0 chrII 166909 . C G 2474 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.0061;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.45;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2507,282,0 chrII 167174 . A G 2313 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.6767;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.22;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2346,267,0 chrII 167373 . C T 1852 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.74;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1885,195,0 chrII 167426 . G A 1600 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=8.8335;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.78;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1633,180,0 chrII 167527 . G A 1780 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.42;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1813,201,0 chrII 167897 . A G 2085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.566;QD=19.86;ReadPosRankSum=1.666;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2118,237,0 chrII 167948 . T C 1542 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.52;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1575,171,0 chrII 167998 . G A 522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=101;Dels=0.00;FS=6.118;HaplotypeScore=8.4748;MLEAC=2;MLEAF=1.00;MQ=37.97;MQ0=0;MQRankSum=-0.500;QD=5.17;ReadPosRankSum=1.694;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:1,97:101:60:555,60,0 chrII 168012 . T A 999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=100;Dels=0.00;FS=4.159;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;MQRankSum=-1.312;QD=9.99;ReadPosRankSum=1.592;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1032,111,0 chrII 168036 . A C 1519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=109;Dels=0.00;FS=3.134;HaplotypeScore=5.7881;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=-0.178;QD=13.94;ReadPosRankSum=0.955;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:1552,157,0 chrII 168065 . T C 2267 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.21;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2300,246,0 chrII 168150 . C G 4558.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.64;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4558,513,0 chrII 168194 . G A 4576.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.6613;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=25.56;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4576,486,0 chrII 168448 . T C 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=3.458;HaplotypeScore=9.4338;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=1.121;QD=23.48;ReadPosRankSum=1.709;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3616,387,0 chrII 168467 . T G 3327.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.5384;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=24.11;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3327,357,0 chrII 168536 . A G 2686 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=23.56;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2719,306,0 chrII 168653 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.14;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3331,354,0 chrII 168711 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=23.25;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3488,372,0 chrII 168731 . A G 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=149;Dels=0.00;FS=6.595;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-0.652;QD=19.56;ReadPosRankSum=2.400;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2948,321,0 chrII 168747 . A G 3060 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.2003;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=20.00;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3093,333,0 chrII 168775 . A T 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=145;Dels=0.00;FS=8.795;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-1.890;QD=19.31;ReadPosRankSum=2.399;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2833,303,0 chrII 168802 . T C 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.962;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.4210;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=1.059;QD=18.40;ReadPosRankSum=1.564;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:2720,297,0 chrII 168914 . C T 4186.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=20.0346;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.39;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4186,445,0 chrII 169483 . A G 2829 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=22.10;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2862,312,0 chrII 169496 . G C 2588 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=23.11;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2621,291,0 chrII 169566 . G T 2019 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.71;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2052,219,0 chrII 169589 . A G 2455 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=24.07;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2488,264,0 chrII 169621 . C T 2415 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=22.16;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2448,267,0 chrII 169820 . G T 4812.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.0170;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=23.25;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4812,516,0 chrII 169875 . T C 2490 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=14.31;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:2523,279,0 chrII 170167 . C G 821 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=18.66;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:93:854,93,0 chrII 170206 . G T 476 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=15.87;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:54:509,54,0 chrII 170207 . C T 453 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=13.73;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:51:486,51,0 chrII 170208 . C T 484 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=14.24;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:54:517,54,0 chrII 170320 . A C 1688 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1721,186,0 chrII 170442 . T C 2297 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.93;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2330,249,0 chrII 170790 . T C 4609.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.05;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4609,519,0 chrII 171183 . G T 2902 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.02;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2935,309,0 chrII 171279 . T C 1746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.047;QD=22.97;ReadPosRankSum=1.685;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:1,73:76:99:1779,195,0 chrII 171433 . A G 3141 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.35;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3174,357,0 chrII 171570 . A G 4768.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.70;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4768,510,0 chrII 171612 . G C 5310.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.58;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:5310,574,0 chrII 172028 . G C 4838.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=21.41;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:0,222:226:99:4838,540,0 chrII 172038 . T A 4854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=234;Dels=0.00;FS=3.202;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=-1.165;QD=20.74;ReadPosRankSum=1.672;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:4854,531,0 chrII 172113 . T C 4365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=179;Dels=0.00;FS=8.793;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.980;QD=24.39;ReadPosRankSum=2.422;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:4365,466,0 chrII 172223 . A G 3595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=-0.898;QD=22.47;ReadPosRankSum=2.311;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3595,387,0 chrII 172245 . C T 2750 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=20.52;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2783,309,0 chrII 172262 . A G 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=0.031;QD=21.70;ReadPosRankSum=2.408;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2594,279,0 chrII 172346 . A T 2855 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.84;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2888,303,0 chrII 172488 . A G 2733 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=25.07;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2766,294,0 chrII 173028 . T C 4930.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=6.1224;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.72;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:4930,531,0 chrII 173043 . A G 4572.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.97;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4572,492,0 chrII 173254 . A T 4676.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=20.42;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4676,522,0 chrII 173256 . C T 4891.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=21.93;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4891,517,0 chrII 173385 . G A 5050.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.82;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:5050,549,0 chrII 173505 . G A 3765.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.6699;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.53;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3765,399,0 chrII 173659 . T C 3754.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3754,408,0 chrII 174030 . G A 4505.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.7043;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.98;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4505,501,0 chrII 174060 . T C 4006.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.02;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4006,447,0 chrII 174535 . C T 1749 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=20.82;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1782,189,0 chrII 174555 . A C 1494 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=18.91;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1527,174,0 chrII 174597 . A G 1404 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=20.06;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1437,156,0 chrII 174599 . G C 1432 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=20.46;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1465,156,0 chrII 174685 . A G 545 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=10.1989;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=0;QD=13.62;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,37:40:63:578,63,0 chrII 174688 . C T 545 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.03;FS=0.000;HaplotypeScore=16.1661;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=0;QD=14.34;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,36:37:63:578,63,0 chrII 174715 . T A 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.739;DP=36;Dels=0.00;FS=1.793;HaplotypeScore=29.6387;MLEAC=2;MLEAF=1.00;MQ=40.07;MQ0=0;MQRankSum=-0.412;QD=0.39;ReadPosRankSum=-0.095;SB=-4.176e+01 GT:AD:DP:GQ:PL 1/1:19,17:36:6:45,6,0 chrII 174853 . C T 518 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=8.78;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:60:551,60,0 chrII 174871 . A T 522 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=69.5384;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;QD=7.15;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:60:555,60,0 chrII 175054 . A G 2477 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=23.15;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2510,270,0 chrII 175109 . T A 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;MQRankSum=-1.147;QD=24.99;ReadPosRankSum=1.665;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3848,414,0 chrII 175409 . A G 5776.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=10.3517;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.80;SB=-2.790e+03 GT:AD:DP:GQ:PL 1/1:0,263:265:99:5776,625,0 chrII 175439 . G A 5399.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.34;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5399,597,0 chrII 175505 . C A 4680.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.08;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4680,499,0 chrII 175526 . A G 4612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.2202;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.732;QD=20.87;ReadPosRankSum=2.568;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:3,218:221:99:4612,510,0 chrII 175784 . T C 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=183;Dels=0.00;FS=2.938;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.821;QD=22.72;ReadPosRankSum=2.341;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:2,179:183:99:4158,459,0 chrII 175964 . T C 3783.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.4077;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.87;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3783,402,0 chrII 176009 . A G 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.8625;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.346;QD=22.18;ReadPosRankSum=1.690;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3682,408,0 chrII 176084 . T C 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=164;Dels=0.01;FS=0.000;HaplotypeScore=18.5366;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.112;QD=22.38;ReadPosRankSum=1.625;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3671,390,0 chrII 176261 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3590,387,0 chrII 177622 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=17.3172;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3436,366,0 chrII 177793 . G A 2538 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.28;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2571,273,0 chrII 178351 . C T 4130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.190;DP=181;Dels=0.00;FS=3.444;HaplotypeScore=12.3157;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.939;QD=22.82;ReadPosRankSum=-1.597;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:4130,412,0 chrII 179248 . A G 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.433;QD=21.98;ReadPosRankSum=1.711;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3714,411,0 chrII 179257 . C T 3813.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.39;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3813,397,0 chrII 179290 . C G 3218.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.11;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3251,363,0 chrII 179410 . T C 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.9910;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.221;QD=22.63;ReadPosRankSum=1.710;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:3598,390,0 chrII 179872 . T C 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.169;QD=23.78;ReadPosRankSum=1.711;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3923,423,0 chrII 180070 . T G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.1993;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.94;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3349,366,0 chrII 180255 . G T 3325.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.27;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3325,357,0 chrII 180379 . A G 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.5195;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.230;QD=21.14;ReadPosRankSum=1.669;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3510,387,0 chrII 180607 . G A 3129 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.67;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3162,339,0 chrII 181033 . T C 6022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.412;DP=288;Dels=0.00;FS=5.194;HaplotypeScore=3.4373;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-0.504;QD=20.91;ReadPosRankSum=3.388;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:4,281:288:99:6022,652,0 chrII 181034 . G T 6163.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=1.8600;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=21.62;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:6163,658,0 chrII 181279 . C T 6409.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=16.7885;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.01;SB=-3.397e+03 GT:AD:DP:GQ:PL 1/1:0,303:305:99:6409,673,0 chrII 181425 . A C 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=4.051;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-1.713;QD=22.59;ReadPosRankSum=0.066;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4134,450,0 chrII 181635 . C T 4048.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.19;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4048,427,0 chrII 181647 . T C 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=188;Dels=0.00;FS=2.787;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.125;QD=18.47;ReadPosRankSum=2.358;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:3472,384,0 chrII 182128 . T C 6626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.384;DP=337;Dels=0.00;FS=14.159;HaplotypeScore=15.7982;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-1.236;QD=19.66;ReadPosRankSum=3.374;SB=-3.890e+03 GT:AD:DP:GQ:PL 1/1:4,333:337:99:6626,712,0 chrII 182137 . G T 6697.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.23;SB=-4.115e+03 GT:AD:DP:GQ:PL 1/1:0,331:331:99:6697,703,0 chrII 182323 . C G 6343.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=18.2341;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.67;SB=-2.972e+03 GT:AD:DP:GQ:PL 1/1:0,265:268:99:6343,682,0 chrII 182436 . T C 4114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=180;Dels=0.00;FS=7.376;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.395;QD=22.86;ReadPosRankSum=2.380;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:4114,456,0 chrII 182892 . G A 5845.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=17.1755;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.88;SB=-3.485e+03 GT:AD:DP:GQ:PL 1/1:0,278:280:99:5845,616,0 chrII 182901 . C T 5391.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=14.5637;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=18.72;SB=-3.121e+03 GT:AD:DP:GQ:PL 1/1:0,282:288:99:5391,588,0 chrII 183084 . A C 4841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.109;DP=225;Dels=0.00;FS=10.548;HaplotypeScore=14.9565;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=1.018;QD=21.52;ReadPosRankSum=4.147;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:6,218:225:99:4841,525,0 chrII 183117 . T C 4886.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.27;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4886,525,0 chrII 183198 . T C 4825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=4.490;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=1.321;QD=24.62;ReadPosRankSum=1.696;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:4825,519,0 chrII 183456 . A G 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=116;Dels=0.00;FS=5.943;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.122;QD=22.27;ReadPosRankSum=2.940;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2616,282,0 chrII 183459 . C T 2569 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.34;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2602,276,0 chrII 183619 . T C 3531.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.1605;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.49;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3531,387,0 chrII 183810 . C T 4855.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.40;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4855,514,0 chrII 183889 . C T 2695 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2728,288,0 chrII 184146 . T C 3116 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.8317;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.97;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3149,342,0 chrII 184236 . G C 2908 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.64;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2941,315,0 chrII 184249 . T C 3110 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.92;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3143,339,0 chrII 184343 . T C 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.341;QD=23.86;ReadPosRankSum=1.643;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2872,309,0 chrII 184372 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.05;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3075,327,0 chrII 184388 . G A 2777 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.40;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2810,297,0 chrII 184606 . C A 3650.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.86;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3650,390,0 chrII 184932 . A C 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.755;QD=21.34;ReadPosRankSum=1.697;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,194:198:99:4226,456,0 chrII 184941 . T A 4103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=188;Dels=0.00;FS=3.877;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-1.235;QD=21.82;ReadPosRankSum=1.714;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4103,435,0 chrII 185376 . G A 3167 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.94;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3200,331,0 chrII 185442 . C G 2897 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=23.94;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2930,312,0 chrII 185458 . A C 2429 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=22.70;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2462,273,0 chrII 185478 . C G 2230 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.08;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2263,246,0 chrII 185492 . C T 2401 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.06;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2434,261,0 chrII 185526 . A G 2308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.8597;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-1.341;QD=19.90;ReadPosRankSum=1.672;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2341,252,0 chrII 185579 . A G 2781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=126;Dels=0.00;FS=3.027;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.283;QD=22.07;ReadPosRankSum=2.411;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2814,303,0 chrII 185762 . T C 2347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=1.332;QD=22.57;ReadPosRankSum=1.699;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2380,261,0 chrII 185891 . T A 2189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.130;DP=100;Dels=0.00;FS=10.272;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.899;QD=21.89;ReadPosRankSum=0.259;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2222,221,0 chrII 185922 . A G 2286 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.86;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2319,252,0 chrII 185954 . A G 2005 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0413;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.85;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2038,228,0 chrII 185979 . T A 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=116;Dels=0.00;FS=3.043;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=0.541;QD=18.08;ReadPosRankSum=2.407;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2130,237,0 chrII 186008 . T G 3159 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.7200;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.79;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3192,345,0 chrII 186049 . T A 5259.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.836;QD=25.65;ReadPosRankSum=1.715;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:1,204:205:99:5259,559,0 chrII 186067 . A G 5230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=209;Dels=0.00;FS=9.201;HaplotypeScore=7.4589;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.966;QD=25.02;ReadPosRankSum=1.682;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:1,207:209:99:5230,582,0 chrII 186185 . G A 5574.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=26.42;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5574,598,0 chrII 186210 . G C 6110.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=11.3762;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=24.25;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:6110,661,0 chrII 186253 . A G 6855.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.70;SB=-3.420e+03 GT:AD:DP:GQ:PL 1/1:0,301:302:99:6855,762,0 chrII 186366 . A G 4709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.357;DP=227;Dels=0.00;FS=1.857;HaplotypeScore=16.9080;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.740;QD=20.74;ReadPosRankSum=3.426;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:5,222:227:99:4709,501,0 chrII 186379 . T C 4728.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=21.49;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4728,499,0 chrII 186397 . T C 4784.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=2.6420;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.94;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4784,510,0 chrII 186424 . A G 4665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.401;DP=236;Dels=0.00;FS=5.225;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-0.542;QD=19.77;ReadPosRankSum=3.401;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:4,229:236:99:4665,507,0 chrII 186525 . A G 5285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=215;Dels=0.00;FS=3.782;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=1.007;QD=24.58;ReadPosRankSum=1.700;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:5285,573,0 chrII 186623 . C T 4023.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=23.95;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4023,421,0 chrII 186648 . C G 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=3.298;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.777;QD=22.74;ReadPosRankSum=0.289;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3593,396,0 chrII 186709 . A T 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.048;QD=22.44;ReadPosRankSum=1.713;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4062,427,0 chrII 186753 . G A 4554.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=22.54;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4554,484,0 chrII 186759 . G A 4523.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=22.73;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4523,481,0 chrII 186778 . A G 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.019;DP=189;Dels=0.00;FS=2.957;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.006;QD=21.81;ReadPosRankSum=1.709;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4122,444,0 chrII 186915 . T C 5351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=218;Dels=0.00;FS=2.769;HaplotypeScore=10.4462;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-0.073;QD=24.55;ReadPosRankSum=2.382;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:5351,579,0 chrII 187153 . G A 4312.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=23.06;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4312,457,0 chrII 187157 . G A 4210.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=23.39;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4210,445,0 chrII 187788 . C T 3682.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3682,382,0 chrII 187873 . T C 2868 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2901,321,0 chrII 188701 . G A 4519.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.04;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4519,489,0 chrII 188734 . T C 4406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=212;Dels=0.00;FS=9.501;HaplotypeScore=9.1538;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-1.286;QD=20.78;ReadPosRankSum=2.426;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:2,209:212:99:4406,471,0 chrII 188743 . G A 4601.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.2318;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.20;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4601,489,0 chrII 189163 . A C 5847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=13.9522;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.155;QD=21.82;ReadPosRankSum=1.706;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:1,267:268:99:5847,660,0 chrII 189263 . T C 4741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=213;Dels=0.00;FS=7.278;HaplotypeScore=19.0091;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=2.021;QD=22.26;ReadPosRankSum=2.426;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:2,210:213:99:4741,508,0 chrII 189739 . G C 4245.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4245,474,0 chrII 190246 . C T 3912.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.6641;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.92;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3912,414,0 chrII 190255 . A G 3630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.7397;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=0.166;QD=20.51;ReadPosRankSum=1.634;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3630,402,0 chrII 190308 . T C 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=3.565;HaplotypeScore=12.0518;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=0.762;QD=21.64;ReadPosRankSum=1.653;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3809,408,0 chrII 190351 . C T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=19.06;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3355,357,0 chrII 190355 . C T 3681.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=20.45;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3681,390,0 chrII 190452 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.863;QD=23.42;ReadPosRankSum=2.092;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3747,405,0 chrII 190737 . A T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.48;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3844,408,0 chrII 190816 . G A 4193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.140;QD=22.54;ReadPosRankSum=-0.309;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4193,456,0 chrII 190944 . T C 4419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;MQRankSum=0.884;QD=23.51;ReadPosRankSum=1.695;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4419,486,0 chrII 190980 . G C 4586.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=24.39;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4586,492,0 chrII 191066 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=19.82;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2174,234,0 chrII 191084 . T A 1474 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.26;MQ0=0;QD=18.20;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1507,165,0 chrII 191087 . A G 1204 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.14;MQ0=0;MQRankSum=-1.732;QD=17.20;ReadPosRankSum=1.633;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1237,135,0 chrII 191088 . A G 1199 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=17.63;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1232,132,0 chrII 191090 . T G 1090 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.200;DP=69;Dels=0.00;FS=11.856;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=0;MQRankSum=0.340;QD=15.80;ReadPosRankSum=2.343;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1123,126,0 chrII 191091 . G C 1155 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=73;Dels=0.00;FS=6.084;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=0;MQRankSum=0.377;QD=15.82;ReadPosRankSum=1.531;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:1,68:73:99:1188,132,0 chrII 191207 . T C 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=3.326;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.61;MQ0=0;MQRankSum=0.077;QD=15.51;ReadPosRankSum=1.578;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2483,270,0 chrII 191214 . G A 2402 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;QD=15.80;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2435,255,0 chrII 191222 . C T 2102 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.14;MQ0=0;QD=15.23;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2135,228,0 chrII 191226 . C T 1820 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=14.33;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1853,201,0 chrII 191228 . C T 1749 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=14.34;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1782,189,0 chrII 191242 . C A 1365 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=0;QD=12.19;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1398,150,0 chrII 191281 . A G 780 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=8.30;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:90:813,90,0 chrII 191288 . T C 756 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=8.49;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:87:789,87,0 chrII 191289 . A G 779 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=8.75;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:93:812,93,0 chrII 191294 . C T 803 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=8.92;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:90:836,90,0 chrII 191298 . T A 751 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=8.63;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:87:784,87,0 chrII 191304 . C A 757 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.74;MQ0=0;QD=8.51;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:84:790,84,0 chrII 191311 . A C 889 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9096;MLEAC=2;MLEAF=1.00;MQ=33.10;MQ0=0;QD=9.77;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:922,102,0 chrII 191363 . C T 2480 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=18.10;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2513,261,0 chrII 191377 . A G 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=7.209;HaplotypeScore=4.8030;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;MQRankSum=1.036;QD=16.80;ReadPosRankSum=2.401;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2604,297,0 chrII 191422 . G A 2905 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.9952;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;QD=18.39;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2938,318,0 chrII 191424 . T C 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;MQRankSum=-0.960;QD=18.59;ReadPosRankSum=1.685;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,147:151:99:2840,315,0 chrII 191470 . A T 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.182;DP=147;Dels=0.00;FS=3.016;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=40.73;MQ0=0;MQRankSum=1.547;QD=20.22;ReadPosRankSum=2.383;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3005,318,0 chrII 191521 . G C 2925 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=22.33;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2958,330,0 chrII 191528 . G A 2934 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=22.74;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2967,312,0 chrII 191599 . C T 3008 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=21.33;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3041,318,0 chrII 191751 . C T 3090 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.6557;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=22.39;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3123,327,0 chrII 192038 . G A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=24.85;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3280,342,0 chrII 192085 . A G 2736 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.79;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2769,297,0 chrII 192122 . C T 1940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.530;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.1921;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.697;QD=19.60;ReadPosRankSum=1.308;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1973,210,0 chrII 192148 . A G 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.728;QD=23.09;ReadPosRankSum=1.667;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2504,267,0 chrII 192289 . G C 1671 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=17.97;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1704,192,0 chrII 192390 . C T 3660.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.56;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3660,393,0 chrII 192591 . C T 4067.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.59;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4067,435,0 chrII 193359 . A G 4696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=217;Dels=0.00;FS=3.009;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-0.759;QD=21.64;ReadPosRankSum=2.404;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:2,213:217:99:4696,525,0 chrII 193380 . A G 4844.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=20.79;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4844,522,0 chrII 193398 . C T 4487.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.4451;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.59;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4487,475,0 chrII 193450 . T C 5148.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=10.4785;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.67;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5148,561,0 chrII 193664 . T C 4096.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.01;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.38;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4096,459,0 chrII 193867 . C T 4885.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=18.6811;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.20;SB=-3.010e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4885,514,0 chrII 194057 . T C 4283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=197;Dels=0.00;FS=5.463;HaplotypeScore=6.9598;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.009;QD=21.74;ReadPosRankSum=1.714;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4283,474,0 chrII 194108 . C T 3627.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3627,393,0 chrII 194226 . C T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.2762;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.61;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3501,366,0 chrII 194232 . G C 3204.99 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.68;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,150:155:99:3238,342,0 chrII 195009 . C T 7027.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=22.1700;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.42;SB=-3.766e+03 GT:AD:DP:GQ:PL 1/1:0,297:300:99:7027,736,0 chrII 195168 . A G 5192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.378;DP=233;Dels=0.00;FS=9.140;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=0.168;QD=22.28;ReadPosRankSum=3.401;SB=-3.097e+03 GT:AD:DP:GQ:PL 1/1:4,229:233:99:5192,556,0 chrII 195177 . T A 4809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=-0.895;QD=20.29;ReadPosRankSum=1.703;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:1,235:237:99:4809,528,0 chrII 195180 . C G 4937.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=20.92;SB=-3.077e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:4937,537,0 chrII 195719 . G A 4512.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.6135;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.62;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4512,483,0 chrII 195960 . A T 2133 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.97;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2166,231,0 chrII 196145 . C A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=21.66;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3487,375,0 chrII 196155 . A G 3181 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.1881;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.40;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3214,345,0 chrII 196185 . T C 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-0.171;QD=18.08;ReadPosRankSum=1.714;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:3489,381,0 chrII 196206 . G A 3395.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=17.50;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3395,360,0 chrII 196417 . A G 5191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.8123;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-1.332;QD=24.84;ReadPosRankSum=1.715;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:5191,558,0 chrII 196581 . G A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=13.2727;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.29;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3366,372,0 chrII 196633 . G A 4347.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.50;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4347,462,0 chrII 196681 . A G 4987.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.97;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4987,535,0 chrII 196964 . A T 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=11.2171;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.789;QD=17.34;ReadPosRankSum=2.286;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2148,225,0 chrII 197035 . A G 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.240;QD=22.02;ReadPosRankSum=1.705;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2895,309,0 chrII 197372 . T C 4118.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=167;Dels=0.00;FS=7.342;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=1.758;QD=24.66;ReadPosRankSum=2.420;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4118,435,0 chrII 197440 . G A 2523 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=22.33;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2556,270,0 chrII 197464 . T C 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=5.298;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;MQRankSum=0.280;QD=19.55;ReadPosRankSum=1.633;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2086,225,0 chrII 197474 . G C 2297 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=22.52;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2330,246,0 chrII 197588 . C G 1269 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.97;MQ0=1;QD=17.38;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1302,144,0 chrII 197703 . T A 399 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.260;DP=29;Dels=0.00;FS=42.965;HaplotypeScore=22.5049;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=0;MQRankSum=-1.645;QD=13.76;ReadPosRankSum=1.184;SB=-1.501e+01 GT:AD:DP:GQ:PL 1/1:5,24:29:45:432,45,0 chrII 197712 . A C 225 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.00;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:33:258,33,0 chrII 197713 . G T 243 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.20;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:33:276,33,0 chrII 197715 . G T 291 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.714;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.510;QD=17.12;ReadPosRankSum=1.327;SB=0.035 GT:AD:DP:GQ:PL 1/1:1,16:17:36:324,36,0 chrII 197761 . G A 314 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.42;MQ0=6;QD=12.08;SB=-8.563e-03 GT:AD:DP:GQ:PL 1/1:4,22:26:36:347,36,0 chrII 197836 . C G 153.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.091;DP=39;Dels=0.00;FS=9.590;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.24;MQ0=25;MQRankSum=1.734;QD=3.92;ReadPosRankSum=-0.639;SB=-8.004e+01 GT:AD:DP:GQ:PL 1/1:23,16:39:21:186,21,0 chrII 197842 . T G 150.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.594;DP=42;Dels=0.00;FS=8.451;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.18;MQ0=27;MQRankSum=2.123;QD=3.57;ReadPosRankSum=-0.425;SB=-7.804e+01 GT:AD:DP:GQ:PL 1/1:25,17:42:21:183,21,0 chrII 197966 . A C 531 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.304;DP=71;Dels=0.00;FS=44.663;HaplotypeScore=8.1041;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=13;MQRankSum=2.877;QD=7.48;ReadPosRankSum=-2.877;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:10,60:71:63:564,63,0 chrII 198029 . A G 1733 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=4;QD=19.92;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1766,183,0 chrII 198085 . G C 1590 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=18.28;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1623,180,0 chrII 198086 . T C 1513 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;MQRankSum=-1.361;QD=17.59;ReadPosRankSum=2.364;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1546,174,0 chrII 198093 . A G 1507 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.05;MQ0=0;QD=17.52;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1540,168,0 chrII 198095 . A G 1437 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;QD=17.11;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1470,162,0 chrII 198168 . C T 2351 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=20.27;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2384,258,0 chrII 198180 . C T 2843 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.4503;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=22.74;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2876,303,0 chrII 198368 . A C 2181 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.19;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2214,240,0 chrII 198512 . A G 1876 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=23.75;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1909,207,0 chrII 198526 . A G 1673 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=22.01;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1706,189,0 chrII 198605 . C T 2041 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.01;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2074,216,0 chrII 198672 . C T 2533 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.67;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2566,273,0 chrII 198751 . T C 4705.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=25.57;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4705,507,0 chrII 198778 . T G 4120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-1.570;QD=23.95;ReadPosRankSum=1.611;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4120,441,0 chrII 198782 . C T 3737.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.2460;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.51;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3737,390,0 chrII 198826 . A G 2321 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=19.02;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2354,264,0 chrII 199139 . T C 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.835;QD=24.58;ReadPosRankSum=1.707;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3441,378,0 chrII 199248 . T C 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=3.590;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.096;QD=21.11;ReadPosRankSum=1.684;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3094,345,0 chrII 199390 . T C 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.634;QD=17.76;ReadPosRankSum=1.704;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2235,240,0 chrII 199391 . A C 2179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.615;DP=126;Dels=0.00;FS=3.859;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.475;QD=17.29;ReadPosRankSum=-1.648;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2212,224,0 chrII 199514 . C T 3215 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.81;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3248,348,0 chrII 199762 . A C 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=142;Dels=0.00;FS=7.176;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.131;QD=23.54;ReadPosRankSum=2.415;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3343,357,0 chrII 199961 . A G 3475.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3475,378,0 chrII 200008 . C T 3072 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.62;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3105,330,0 chrII 200483 . G A 3824.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.90;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3824,420,0 chrII 200522 . A G 3664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.638;QD=21.18;ReadPosRankSum=1.692;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3664,405,0 chrII 200530 . G T 4062.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=22.44;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4062,429,0 chrII 200968 . C T 3465.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.66;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3465,363,0 chrII 201063 . C T 3986.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.91;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3986,429,0 chrII 201476 . G A 5625.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.8141;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.44;SB=-3.008e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5625,598,0 chrII 201611 . T C 5853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=257;Dels=0.00;FS=3.308;HaplotypeScore=15.5031;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.020;QD=22.77;ReadPosRankSum=1.651;SB=-3.218e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:5853,639,0 chrII 201647 . C T 5079.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.7967;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.37;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5079,546,0 chrII 201782 . C T 4280.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.62;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4280,468,0 chrII 201831 . G A 4225.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.3658;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.96;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4225,456,0 chrII 201879 . C T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.65;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3402,354,0 chrII 202001 . G C 4557.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.2232;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.18;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4557,498,0 chrII 202108 . A T 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=173;Dels=0.00;FS=3.992;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.010;QD=23.99;ReadPosRankSum=1.712;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4150,439,0 chrII 202227 . T A 5032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=23.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.655;QD=22.17;ReadPosRankSum=1.671;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:5032,543,0 chrII 202411 . G A 6569.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=20.0163;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.63;SB=-2.988e+03 GT:AD:DP:GQ:PL 1/1:0,276:278:99:6569,688,0 chrII 202580 . C G 4992.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.9620;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.80;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:4992,543,0 chrII 202724 . T C 3648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=218;Dels=0.00;FS=4.771;HaplotypeScore=20.5103;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.160;QD=16.73;ReadPosRankSum=1.716;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,215:218:99:3648,402,0 chrII 202739 . G T 3412.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.4319;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=18.25;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,182:187:99:3412,360,0 chrII 203114 . C T 3856.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.10;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3856,408,0 chrII 203566 . T C 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.874;QD=23.10;ReadPosRankSum=2.390;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2897,315,0 chrII 203783 . G C 4178.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.76;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4178,462,0 chrII 203910 . C G 2599 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=17.4970;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=14.77;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:2632,303,0 chrII 204179 . T C 4512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=223;Dels=0.00;FS=6.035;HaplotypeScore=10.6995;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-0.586;QD=20.23;ReadPosRankSum=2.914;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:3,218:222:99:4512,501,0 chrII 204182 . T C 4470.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.7614;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=20.60;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4470,475,0 chrII 204215 . T C 4361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.465;QD=19.21;ReadPosRankSum=0.298;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4361,471,0 chrII 204404 . C T 5289.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=16.9593;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.30;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5289,565,0 chrII 204458 . C T 6605.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=24.28;SB=-3.609e+03 GT:AD:DP:GQ:PL 1/1:0,270:272:99:6605,706,0 chrII 204536 . A G 6034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=269;Dels=0.00;FS=3.016;HaplotypeScore=26.2144;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.625;QD=22.43;ReadPosRankSum=2.422;SB=-3.353e+03 GT:AD:DP:GQ:PL 1/1:2,263:269:99:6034,649,0 chrII 204923 . A T 2984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=156;Dels=0.00;FS=8.200;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=-0.543;QD=19.13;ReadPosRankSum=2.276;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3017,318,0 chrII 204924 . T C 2940 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.34;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2973,321,0 chrII 204995 . C T 3176 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.5087;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.03;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3209,342,0 chrII 205151 . G A 4379.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=21.79;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4379,463,0 chrII 205157 . C A 4042.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=20.73;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4042,432,0 chrII 205343 . A C 4178.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.01;FS=0.000;HaplotypeScore=8.9313;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.43;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4178,459,0 chrII 205478 . T C 7028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.390;QD=24.66;ReadPosRankSum=1.695;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,283:285:99:7028,765,0 chrII 205891 . T C 3053 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.3018;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.49;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3086,351,0 chrII 206076 . C G 3935.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.8568;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.01;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3935,432,0 chrII 206280 . T C 5004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=227;Dels=0.00;FS=3.875;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.816;QD=22.04;ReadPosRankSum=1.702;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:5004,546,0 chrII 206369 . T C 5116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=230;Dels=0.00;FS=4.165;HaplotypeScore=12.8091;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.298;QD=22.24;ReadPosRankSum=1.717;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:1,226:230:99:5116,567,0 chrII 206713 . G A 3550.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.8732;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3550,384,0 chrII 207171 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=22.28;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3498,381,0 chrII 207192 . A G 3782.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.3426;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.99;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3782,408,0 chrII 207220 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.35;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3409,360,0 chrII 207561 . T C 3146 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.20;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3179,348,0 chrII 207819 . C G 4719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=206;Dels=0.00;FS=3.140;HaplotypeScore=14.8776;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.613;QD=22.91;ReadPosRankSum=1.121;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4719,505,0 chrII 207923 . C T 4558.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.26;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4558,475,0 chrII 208189 . C T 4515.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.64;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4515,475,0 chrII 208213 . C T 4597.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.4036;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.70;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4597,484,0 chrII 208351 . T A 4510.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.55;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4510,498,0 chrII 208417 . G A 4881.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.04;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4881,522,0 chrII 208471 . A G 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=189;Dels=0.00;FS=2.927;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.272;QD=21.49;ReadPosRankSum=2.423;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:2,183:189:99:4062,453,0 chrII 208543 . A G 4855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=3.128;HaplotypeScore=7.4858;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.639;QD=25.82;ReadPosRankSum=1.695;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4855,522,0 chrII 208574 . A G 4994.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.1238;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.01;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4994,534,0 chrII 208735 . C T 3072 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.90;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3105,339,0 chrII 208870 . C T 2419 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=17.40;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2452,267,0 chrII 208879 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5432;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=18.32;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2689,285,0 chrII 208915 . C T 2099 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=14.38;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2132,231,0 chrII 208916 . C G 2122 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=14.34;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2155,234,0 chrII 208963 . C A 2514 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=18.90;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2547,267,0 chrII 209245 . G A 3162 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3195,348,0 chrII 209373 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3017,330,0 chrII 209754 . A G 4822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=208;Dels=0.00;FS=3.617;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.226;QD=23.18;ReadPosRankSum=1.648;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4822,540,0 chrII 210006 . T C 4786.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=22.8113;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.19;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:4786,540,0 chrII 210102 . C T 4165.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=16.2064;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.69;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4165,459,0 chrII 210387 . A G 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=155;Dels=0.00;FS=6.105;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.706;QD=23.66;ReadPosRankSum=2.386;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3668,390,0 chrII 210582 . G A 3340.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.69;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3340,369,0 chrII 210974 . T C 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=147;Dels=0.00;FS=2.951;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-1.179;QD=21.08;ReadPosRankSum=2.416;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3132,342,0 chrII 210990 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.15;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3136,342,0 chrII 211332 . G A 5799.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.01;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5799,610,0 chrII 211581 . C T 5110.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.7123;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.56;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5110,549,0 chrII 212351 . G A 842 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.14;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:875,93,0 chrII 212495 . G T 170.06 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=8.95;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:21:203,21,0 chrII 212638 . T C 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-1.581;QD=25.89;ReadPosRankSum=1.711;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:1,160:161:99:4168,456,0 chrII 212810 . T C 6282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=268;Dels=0.00;FS=2.915;HaplotypeScore=15.8605;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.427;QD=23.44;ReadPosRankSum=2.431;SB=-2.937e+03 GT:AD:DP:GQ:PL 1/1:2,266:268:99:6282,673,0 chrII 212882 . A G 5622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.284;DP=286;Dels=0.00;FS=5.214;HaplotypeScore=6.9781;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-0.999;QD=19.66;ReadPosRankSum=3.382;SB=-3.009e+03 GT:AD:DP:GQ:PL 1/1:4,282:286:99:5622,610,0 chrII 212886 . C G 5477.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.06;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:5477,592,0 chrII 213058 . C T 5755.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=17.4500;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.11;SB=-2.974e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5755,607,0 chrII 213466 . A G 6736.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=22.5630;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.49;SB=-3.032e+03 GT:AD:DP:GQ:PL 1/1:0,270:275:99:6736,724,0 chrII 213545 . G C 4692.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.33;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:4692,522,0 chrII 213628 . T A 5686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=252;Dels=0.00;FS=3.222;HaplotypeScore=16.2604;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.347;QD=22.56;ReadPosRankSum=1.705;SB=-3.081e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:5686,610,0 chrII 213728 . T G 4646.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.51;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4646,493,0 chrII 214190 . G C 3736.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.37;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3736,420,0 chrII 214439 . G A 3535.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.82;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3535,375,0 chrII 214711 . G A 2822 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2855,300,0 chrII 214801 . G A 3716.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.60;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3716,390,0 chrII 214810 . C T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.76;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3537,369,0 chrII 214891 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.72;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3453,381,0 chrII 215181 . G A 4730.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.5928;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.38;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4730,499,0 chrII 215748 . T C 7553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=359;Dels=0.00;FS=7.120;HaplotypeScore=27.6381;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.511;QD=21.04;ReadPosRankSum=2.429;SB=-4.027e+03 GT:AD:DP:GQ:PL 1/1:2,356:359:99:7553,814,0 chrII 215946 . G C 3290.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=15.74;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,205:209:99:3290,363,0 chrII 215962 . G A 3652.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=15.22;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:3652,402,0 chrII 216520 . A G 5478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=240;Dels=0.00;FS=6.068;HaplotypeScore=11.1208;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.101;QD=22.83;ReadPosRankSum=2.937;SB=-3.073e+03 GT:AD:DP:GQ:PL 1/1:3,235:240:99:5478,583,0 chrII 216541 . A C 5225.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=9.9238;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.77;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5225,594,0 chrII 216631 . A G 5041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.376;DP=214;Dels=0.00;FS=9.097;HaplotypeScore=15.6261;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.415;QD=23.56;ReadPosRankSum=3.418;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:4,205:214:99:5041,541,0 chrII 216794 . T C 8249.01 PASS AC=2;AF=1.00;AN=2;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=26.8023;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.91;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:0,343:345:99:8249,895,0 chrII 217015 . G C 9884.01 filter AC=2;AF=1.00;AN=2;DP=444;Dels=0.00;FS=0.000;HaplotypeScore=27.4030;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.26;SB=-5.153e+03 GT:AD:DP:GQ:PL 1/1:0,439:444:99:9884,1072,0 chrII 217070 . C T 7820.01 PASS AC=2;AF=1.00;AN=2;DP=356;Dels=0.00;FS=0.000;HaplotypeScore=21.4480;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.97;SB=-4.040e+03 GT:AD:DP:GQ:PL 1/1:0,355:356:99:7820,814,0 chrII 217109 . T C 6196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=288;Dels=0.00;FS=4.604;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.200;QD=21.51;ReadPosRankSum=1.633;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:1,279:288:99:6196,664,0 chrII 217360 . T A 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=152;Dels=0.00;FS=3.306;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.342;QD=23.21;ReadPosRankSum=1.709;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3528,369,0 chrII 217636 . A G 4183.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.9548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4183,468,0 chrII 217676 . C T 4499.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.3541;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4499,486,0 chrII 218039 . A G 2327 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.27;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2360,255,0 chrII 218507 . T C 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.102;QD=19.88;ReadPosRankSum=1.681;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2776,306,0 chrII 218630 . C T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.08;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3612,378,0 chrII 218666 . G A 3783.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.79;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3783,405,0 chrII 219410 . C T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.9675;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.77;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3295,345,0 chrII 219506 . A G 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=155;Dels=0.00;FS=2.587;HaplotypeScore=13.1597;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.325;QD=23.06;ReadPosRankSum=2.402;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3574,387,0 chrII 220055 . C T 3552.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.0285;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=25.19;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3552,367,0 chrII 220122 . G A 3142 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.14;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3175,348,0 chrII 220136 . C T 3506.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=23.07;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3506,372,0 chrII 220216 . A G 4956.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=25.16;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4956,523,0 chrII 220331 . C T 5394.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=24.63;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5394,588,0 chrII 220403 . A G 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=199;Dels=0.02;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=1.323;QD=19.93;ReadPosRankSum=1.714;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3967,429,0 chrII 220405 . G A 4045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=196;Dels=0.00;FS=6.082;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=0.246;QD=20.64;ReadPosRankSum=2.841;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:4045,435,0 chrII 220424 . A C 2983 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=17.24;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3016,339,0 chrII 220451 . T G 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.4090;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-1.692;QD=17.91;ReadPosRankSum=1.653;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3186,348,0 chrII 220776 . C T 2287 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=20.06;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2320,246,0 chrII 220790 . C T 2171 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=19.38;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2204,237,0 chrII 220911 . G T 2358 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=1;QD=23.82;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2391,249,0 chrII 220914 . C T 2259 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=22.59;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2292,252,0 chrII 226877 . A T 51.97 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=1;QD=2.08;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,24:25:9:84,9,0 chrII 226878 . T A 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=1;QD=2.00;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,24:25:9:82,9,0 chrII 226887 . C T 52.97 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=1;QD=2.30;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,22:23:9:85,9,0 chrII 226900 . C T 52.97 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=1;QD=2.30;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,22:23:9:85,9,0 chrII 226903 . T C 53.97 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=1;QD=2.35;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,22:23:9:86,9,0 chrII 226906 . T A 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=1;QD=2.17;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,22:23:9:82,9,0 chrII 226912 . A G 53.97 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=1;QD=2.35;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,22:23:9:86,9,0 chrII 226931 . C G 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=1;QD=3.91;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:1,11:12:9:79,9,0 chrII 226932 . T A 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=1;QD=4.08;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:1,11:12:9:81,9,0 chrII 226936 . C A 51.97 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=1;QD=4.33;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:84,9,0 chrII 226965 . G A 173.06 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;QD=4.02;SB=-2.341e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:21:206,21,0 chrII 226979 . T C 492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=0;MQRankSum=-2.410;QD=7.94;ReadPosRankSum=2.291;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:60:525,60,0 chrII 227201 . C T 3481.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=8.9972;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=25.04;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3481,366,0 chrII 227302 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=0.636;QD=20.46;ReadPosRankSum=1.710;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3268,348,0 chrII 227328 . G A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=21.81;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3294,360,0 chrII 227387 . A T 3304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.369;QD=23.10;ReadPosRankSum=1.684;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3304,354,0 chrII 227511 . A G 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.844;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.715;QD=23.53;ReadPosRankSum=1.705;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2998,333,0 chrII 227881 . T C 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=3.718;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.506;QD=23.18;ReadPosRankSum=1.640;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2675,288,0 chrII 228106 . T C 3283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.254;DP=138;Dels=0.00;FS=8.516;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.387;QD=23.79;ReadPosRankSum=3.254;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:4,133:138:99:3283,357,0 chrII 228251 . T C 3843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.2641;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.423;QD=24.32;ReadPosRankSum=1.710;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3843,420,0 chrII 228551 . C T 3683.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.92;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3683,387,0 chrII 228581 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.98;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3453,369,0 chrII 228645 . C T 3118 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.17;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3151,330,0 chrII 229777 . T C 3523.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=15.2089;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3523,381,0 chrII 230037 . A T 4667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=206;Dels=0.00;FS=3.025;HaplotypeScore=8.5550;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.483;QD=22.66;ReadPosRankSum=2.402;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4667,498,0 chrII 230255 . C T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.82;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:3519,378,0 chrII 230576 . A G 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=4.678;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.929;QD=23.20;ReadPosRankSum=1.707;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3234,366,0 chrII 230849 . A G 4961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=215;Dels=0.00;FS=9.790;HaplotypeScore=18.1862;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.005;QD=23.07;ReadPosRankSum=2.967;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:3,210:215:99:4961,534,0 chrII 231614 . A G 3684.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3684,396,0 chrII 231704 . A G 3903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.655;DP=173;Dels=0.00;FS=11.638;HaplotypeScore=11.2755;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.269;QD=22.56;ReadPosRankSum=1.661;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:3903,429,0 chrII 231837 . A G 5508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=223;Dels=0.00;FS=3.149;HaplotypeScore=12.8668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.085;QD=24.70;ReadPosRankSum=1.670;SB=-2.859e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:5508,594,0 chrII 232618 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.05;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3231,351,0 chrII 233405 . C T 4458.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4458,466,0 chrII 234340 . T C 4959.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.66;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4959,540,0 chrII 234385 . G A 5614.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=11.8032;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.73;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5614,604,0 chrII 234604 . T C 3608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.0737;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.110;QD=21.10;ReadPosRankSum=1.711;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,166:171:99:3608,396,0 chrII 234613 . T A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.94;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3671,387,0 chrII 234673 . G A 3534.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.65;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3534,384,0 chrII 234856 . C G 3609.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=24.55;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3609,387,0 chrII 235112 . G A 1645 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=21.09;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1678,174,0 chrII 235113 . C T 1662 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.77;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1695,174,0 chrII 235634 . T C 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=151;Dels=0.00;FS=2.955;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-1.213;QD=23.32;ReadPosRankSum=2.417;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3522,384,0 chrII 235845 . A G 177.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=164;Dels=0.00;FS=5.974;HaplotypeScore=148.1310;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-1.242;QD=1.08;ReadPosRankSum=2.919;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:3,159:164:24:210,24,0 chrII 236156 . C T 2323 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.74;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2356,246,0 chrII 236256 . T A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.0076;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.58;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3453,363,0 chrII 236313 . C T 1631 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.39;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1664,183,0 chrII 236383 . G A 323 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=16.15;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:39:356,39,0 chrII 236390 . G A 358 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;QD=14.92;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,23:24:42:391,42,0 chrII 236391 . G A 385 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=15.40;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,24:25:45:418,45,0 chrII 236441 . T A 1260 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;QD=18.00;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1293,138,0 chrII 236489 . C A 2079 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.85;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2112,225,0 chrII 236626 . T C 2247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-0.676;QD=21.40;ReadPosRankSum=1.666;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2280,246,0 chrII 237151 . A G 2515 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2548,291,0 chrII 237541 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.4476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3344,354,0 chrII 237656 . C T 2316 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=20.86;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2349,252,0 chrII 237660 . T C 2206 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=20.05;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2239,240,0 chrII 237729 . A G 1905 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.84;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1938,213,0 chrII 237971 . A T 1414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=5.330;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=0.717;QD=24.38;ReadPosRankSum=1.673;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1447,156,0 chrII 238080 . G C 1597 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.47;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1630,186,0 chrII 238111 . A G 1894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.711;QD=24.28;ReadPosRankSum=1.688;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1927,207,0 chrII 238137 . T C 1660 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=24.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1693,183,0 chrII 238163 . A T 1134 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=0.237;QD=24.13;ReadPosRankSum=2.345;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,45:47:99:1167,126,0 chrII 238186 . G A 449 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=21.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:51:482,51,0 chrII 238189 . C T 399 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;QD=23.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:48:432,48,0 chrII 238224 . T A 81.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.30;SB=-2.755e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:114,12,0 chrII 238239 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=5.95;SB=-2.676e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:55,6,0 chrII 238287 . A C 210.01 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=11.67;SB=-2.368e-02 GT:AD:DP:GQ:PL 1/1:0,17:18:27:243,27,0 chrII 238291 . T C 238 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.642;QD=9.15;ReadPosRankSum=2.729;SB=-1.513e-02 GT:AD:DP:GQ:PL 1/1:3,23:26:30:271,30,0 chrII 238346 . T G 1840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.140;QD=23.29;ReadPosRankSum=2.388;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1873,201,0 chrII 238452 . A G 2670 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.72;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2703,291,0 chrII 238608 . A C 3584.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.4712;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.37;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,178:185:99:3584,387,0 chrII 238611 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.118;DP=187;Dels=0.00;FS=7.877;HaplotypeScore=5.0486;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-0.538;QD=18.89;ReadPosRankSum=1.812;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:2,183:187:99:3532,387,0 chrII 238675 . C T 4011.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=22.16;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4011,421,0 chrII 238737 . G A 3560.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.89;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3560,384,0 chrII 238944 . T A 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=1.189;QD=22.49;ReadPosRankSum=1.680;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3046,324,0 chrII 239434 . T A 4242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.391;QD=22.81;ReadPosRankSum=1.658;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4242,465,0 chrII 239528 . A C 4566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=203;Dels=0.00;FS=3.811;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.303;QD=22.49;ReadPosRankSum=1.698;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4566,507,0 chrII 239597 . C T 5152.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.6547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.85;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5152,547,0 chrII 239625 . T C 4631.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.8807;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.16;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4631,504,0 chrII 239864 . G A 3763.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.97;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3763,399,0 chrII 239951 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.86;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3340,360,0 chrII 240048 . C A 2893 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2926,309,0 chrII 240542 . C T 2658 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2691,285,0 chrII 240840 . G A 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.408;DP=140;Dels=0.00;FS=3.577;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.636;QD=22.95;ReadPosRankSum=1.682;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3246,339,0 chrII 240963 . C T 3883.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.81;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3883,426,0 chrII 241143 . A G 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.286;QD=21.56;ReadPosRankSum=1.698;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2254,243,0 chrII 241196 . C T 1493 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.99;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1526,171,0 chrII 241422 . T C 488 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.07;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:57:521,57,0 chrII 241482 . C T 1200 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.91;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1233,129,0 chrII 242012 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=147;Dels=0.00;FS=7.974;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.226;QD=22.78;ReadPosRankSum=2.416;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3349,360,0 chrII 242038 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.534;QD=20.79;ReadPosRankSum=1.710;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:3389,366,0 chrII 242434 . G A 6283.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=12.9182;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.68;SB=-3.534e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:6283,670,0 chrII 242746 . C G 3859.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.9844;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.53;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:3859,420,0 chrII 243436 . G A 5752.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=16.3051;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5752,627,0 chrII 243486 . G A 4521.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4521,481,0 chrII 243609 . T C 4691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=197;Dels=0.00;FS=11.040;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.740;QD=23.81;ReadPosRankSum=2.893;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:3,194:197:99:4691,507,0 chrII 243768 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.74;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4060,432,0 chrII 243846 . C T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.2762;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=18.59;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3439,369,0 chrII 244011 . A G 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=19.5049;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.127;QD=22.69;ReadPosRankSum=1.690;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3744,411,0 chrII 244215 . A G 1490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.335;QD=20.41;ReadPosRankSum=2.247;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1523,165,0 chrII 244489 . A T 1496 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1529,165,0 chrII 244711 . G A 3154 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=13.0397;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.19;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3187,330,0 chrII 244779 . A G 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=138;Dels=0.00;FS=8.811;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.296;QD=24.62;ReadPosRankSum=2.414;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3397,360,0 chrII 245034 . C T 4729.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.57;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4729,493,0 chrII 245073 . A G 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=177;Dels=0.00;FS=2.729;HaplotypeScore=6.1199;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.916;QD=21.85;ReadPosRankSum=2.365;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3867,423,0 chrII 245305 . C T 1975 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2008,219,0 chrII 245747 . T C 2523 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=18.28;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2556,279,0 chrII 245877 . G A 4421.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=17.3099;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.43;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4421,460,0 chrII 246027 . T G 6797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.700;DP=281;Dels=0.00;FS=7.942;HaplotypeScore=15.1909;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.394;QD=24.19;ReadPosRankSum=3.683;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:5,274:281:99:6797,733,0 chrII 246059 . G A 6976.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.39;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:6976,736,0 chrII 246172 . G A 7826.01 PASS AC=2;AF=1.00;AN=2;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=9.6659;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.02;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,340:340:99:7826,832,0 chrII 246265 . C T 5739.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=19.6957;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.64;SB=-3.174e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:5739,615,0 chrII 246575 . T C 2032 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.73;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2065,222,0 chrII 246579 . A C 1944 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=18.69;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1977,228,0 chrII 246816 . G A 2345 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.45;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2378,264,0 chrII 246960 . C T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.54;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3831,405,0 chrII 247040 . C T 3371.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3371,363,0 chrII 247234 . A G 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=176;Dels=0.00;FS=2.984;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=0.204;QD=21.86;ReadPosRankSum=2.422;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3848,426,0 chrII 247522 . G A 3464.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.50;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3464,369,0 chrII 247531 . C T 3387.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.53;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3387,363,0 chrII 247603 . A T 3093 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=18.86;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3126,339,0 chrII 247759 . G A 3896.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.2585;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=22.52;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3896,426,0 chrII 247789 . A G 3972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=4.434;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-0.161;QD=24.22;ReadPosRankSum=1.711;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3972,418,0 chrII 247813 . C T 3701.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.03;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3701,393,0 chrII 247993 . C T 5467.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=15.0082;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=25.08;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5467,568,0 chrII 248152 . A T 4557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.8569;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.840;QD=22.12;ReadPosRankSum=0.852;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4557,498,0 chrII 248212 . A G 4921.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.43;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4921,531,0 chrII 248555 . G T 2034 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.1437;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.97;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2067,228,0 chrII 248659 . G A 2429 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.81;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2462,258,0 chrII 248671 . C G 2109 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.88;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2142,228,0 chrII 248728 . A G 2346 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.5271;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.78;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2379,255,0 chrII 248918 . C T 3733.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=18.4323;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.22;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3733,399,0 chrII 249073 . G A 4617.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.41;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4617,492,0 chrII 249400 . G C 5194.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.40;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5194,559,0 chrII 249533 . T C 4368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=201;Dels=0.00;FS=3.622;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.070;QD=21.73;ReadPosRankSum=1.680;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:1,197:201:99:4368,483,0 chrII 249570 . G A 4156.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=17.1570;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.65;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4156,430,0 chrII 249967 . A G 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=167;Dels=0.00;FS=8.459;HaplotypeScore=14.7765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.807;QD=21.98;ReadPosRankSum=2.376;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3670,414,0 chrII 250250 . G A 2711 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2744,297,0 chrII 250316 . G A 3277.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3277,348,0 chrII 250482 . C A 2897 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.62;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,130:134:99:2930,315,0 chrII 251004 . A T 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.113;DP=146;Dels=0.00;FS=6.418;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.749;QD=21.59;ReadPosRankSum=2.399;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3185,345,0 chrII 251045 . T C 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=146;Dels=0.00;FS=2.854;HaplotypeScore=16.8878;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.691;QD=21.34;ReadPosRankSum=2.415;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3148,351,0 chrII 251105 . T G 3743.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.15;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3743,390,0 chrII 251134 . G T 4082.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.46;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4082,427,0 chrII 251548 . G A 3984.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=16.2423;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.64;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:3984,421,0 chrII 251790 . C T 2098 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=21.19;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2131,231,0 chrII 251800 . C T 1913 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=18.75;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1946,210,0 chrII 251820 . G C 1969 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=19.12;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2002,222,0 chrII 251882 . A G 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=0.646;QD=19.90;ReadPosRankSum=1.703;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2401,267,0 chrII 252013 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=21.61;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3058,318,0 chrII 252027 . C T 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=131;Dels=0.00;FS=3.849;HaplotypeScore=1.9722;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;MQRankSum=-0.780;QD=20.23;ReadPosRankSum=1.653;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2683,274,0 chrII 252036 . C T 2510 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=19.02;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2543,276,0 chrII 252044 . C T 2420 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=18.62;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2453,264,0 chrII 252161 . C G 4175.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.94;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4175,453,0 chrII 252193 . A G 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.253;QD=21.54;ReadPosRankSum=1.695;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3985,432,0 chrII 252572 . T G 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=193;Dels=0.00;FS=2.839;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;MQRankSum=0.681;QD=14.15;ReadPosRankSum=2.399;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:2764,309,0 chrII 252578 . C T 2921 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;QD=14.90;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:2954,315,0 chrII 252589 . T C 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.3763;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;MQRankSum=-0.760;QD=14.76;ReadPosRankSum=1.661;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:2925,321,0 chrII 252599 . T C 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.4885;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=-1.621;QD=14.77;ReadPosRankSum=1.695;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:2795,309,0 chrII 252680 . A G 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=144;Dels=0.00;FS=3.024;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-1.831;QD=19.88;ReadPosRankSum=2.398;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:2896,321,0 chrII 252704 . G T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.7595;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.59;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3411,360,0 chrII 252792 . T G 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=188;Dels=0.00;FS=4.244;HaplotypeScore=15.1878;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;MQRankSum=-0.130;QD=22.92;ReadPosRankSum=1.695;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4309,477,0 chrII 253219 . G A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.92;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3397,360,0 chrII 253709 . G A 5716.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=19.4407;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.53;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5716,598,0 chrII 254030 . C T 3614.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3614,384,0 chrII 254124 . T C 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.129;DP=138;Dels=0.00;FS=3.027;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.062;QD=21.61;ReadPosRankSum=2.414;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3015,330,0 chrII 254349 . C T 4232.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.18;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4232,436,0 chrII 254368 . C T 4115.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.1159;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.21;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4115,453,0 chrII 254409 . C T 4130.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.2310;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.96;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4130,430,0 chrII 254436 . T C 3928.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=20.67;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3928,438,0 chrII 254728 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.26;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3536,375,0 chrII 254742 . C T 2886 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.38;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2919,303,0 chrII 254834 . A G 2597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.256;QD=22.58;ReadPosRankSum=1.702;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2630,276,0 chrII 254899 . T A 2067 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.23;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2100,228,0 chrII 255033 . C T 1127 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.00;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1160,123,0 chrII 255127 . A G 849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;FS=5.682;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.171;QD=22.95;ReadPosRankSum=1.639;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:96:882,96,0 chrII 255469 . G A 2753 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.02;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2786,294,0 chrII 255688 . T A 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.559;DP=112;Dels=0.00;FS=12.664;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-0.541;QD=18.44;ReadPosRankSum=2.937;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2098,228,0 chrII 255740 . G A 2183 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.83;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,96:100:99:2216,234,0 chrII 255743 . C T 2123 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.02;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2156,234,0 chrII 255828 . T C 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.249;DP=110;Dels=0.00;FS=4.944;HaplotypeScore=12.8480;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;MQRankSum=1.509;QD=22.79;ReadPosRankSum=3.313;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:4,106:110:99:2540,273,0 chrII 256267 . C A 2414 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2447,261,0 chrII 256925 . T C 1566 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.47;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1599,171,0 chrII 256941 . A T 1706 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.37;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1739,183,0 chrII 257430 . C T 5324.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.00;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5324,574,0 chrII 257913 . T C 4990.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=15.1983;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.88;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4990,540,0 chrII 258153 . T C 5404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.0033;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.572;QD=23.70;ReadPosRankSum=1.717;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5404,580,0 chrII 258208 . A C 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=220;Dels=0.00;FS=6.929;HaplotypeScore=7.2569;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-1.759;QD=19.22;ReadPosRankSum=2.416;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:2,215:220:99:4229,456,0 chrII 258211 . A G 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;DP=217;Dels=0.00;FS=10.780;HaplotypeScore=6.7007;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-1.879;QD=19.17;ReadPosRankSum=2.968;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:3,213:217:99:4160,447,0 chrII 258313 . G C 4126.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4126,444,0 chrII 258409 . C A 4429.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=18.1791;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.82;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4429,483,0 chrII 258662 . C T 3004 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.11;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3037,324,0 chrII 258851 . T C 1335 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=17.57;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1368,147,0 chrII 258852 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=18.25;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1438,156,0 chrII 258896 . A G 1767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.01;FS=3.285;HaplotypeScore=5.0581;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-0.318;QD=17.85;ReadPosRankSum=1.661;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1800,198,0 chrII 258961 . A G 1232 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=3.227;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;MQRankSum=-0.760;QD=15.02;ReadPosRankSum=1.648;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1265,135,0 chrII 258965 . T A 1214 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;MQRankSum=-0.755;QD=15.56;ReadPosRankSum=1.688;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1247,135,0 chrII 258971 . C T 1199 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=15.78;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1232,129,0 chrII 259158 . A G 3351.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=25.78;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3351,366,0 chrII 259235 . T C 2694 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=23.63;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2727,294,0 chrII 259410 . A C 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.6478;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=0;MQRankSum=-0.719;QD=23.78;ReadPosRankSum=1.705;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3125,336,0 chrII 259419 . T C 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=118;Dels=0.00;FS=3.941;HaplotypeScore=2.7591;MLEAC=2;MLEAF=1.00;MQ=42.37;MQ0=0;MQRankSum=-0.213;QD=22.09;ReadPosRankSum=1.702;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,113:118:99:2640,282,0 chrII 259438 . A T 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=108;Dels=0.00;FS=2.930;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;MQRankSum=-1.060;QD=21.32;ReadPosRankSum=2.313;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2336,249,0 chrII 259451 . T A 2606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=3.299;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;MQRankSum=0.620;QD=23.91;ReadPosRankSum=1.669;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2639,279,0 chrII 259521 . C T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=24.02;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3252,366,0 chrII 259561 . A G 1989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=37.88;MQ0=0;MQRankSum=-1.535;QD=22.60;ReadPosRankSum=1.693;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2022,222,0 chrII 259797 . T C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.29;MQ0=3;QD=2.69;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:3,4:7:6:50,6,0 chrII 265775 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.98;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3645,387,0 chrII 265831 . A G 4552.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.87;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4552,492,0 chrII 266107 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.4648;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.36;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3332,348,0 chrII 266250 . A T 3892.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.77;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3892,414,0 chrII 266324 . T C 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;DP=120;Dels=0.00;FS=6.086;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=1.670;QD=23.37;ReadPosRankSum=2.873;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:3,116:120:99:2838,306,0 chrII 266339 . T G 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=125;Dels=0.00;FS=5.763;HaplotypeScore=1.9765;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-0.686;QD=22.01;ReadPosRankSum=2.944;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2784,300,0 chrII 266358 . C T 3105 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.3172;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=22.02;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3138,330,0 chrII 266478 . G A 2693 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2726,297,0 chrII 266551 . C G 3757.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.72;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3757,402,0 chrII 266622 . T C 3139 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=16.0614;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.75;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3172,339,0 chrII 266791 . G A 4190.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.65;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4190,444,0 chrII 266952 . A G 3928.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.58;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3928,441,0 chrII 267510 . C T 2706 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.00;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2739,294,0 chrII 267525 . T A 2497 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=21.16;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2530,267,0 chrII 267594 . A G 2760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=127;Dels=0.00;FS=7.406;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.513;QD=21.73;ReadPosRankSum=2.254;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2793,300,0 chrII 269396 . C T 4708.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.19;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4708,507,0 chrII 269653 . C T 2401 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=14.1811;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.21;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2434,261,0 chrII 271446 . G A 5089.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.95;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:5089,532,0 chrII 271912 . G A 2672 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2705,291,0 chrII 272240 . C T 3634.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3634,384,0 chrII 273221 . C T 4180.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.73;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4180,441,0 chrII 273323 . A G 4742.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.0143;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4742,522,0 chrII 275698 . G A 2308 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.41;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2341,243,0 chrII 277029 . A G 5098.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.3284;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.98;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5098,573,0 chrII 277912 . A G 4418.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=15.1783;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.63;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4418,477,0 chrII 279910 . T C 4747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=198;Dels=0.00;FS=5.705;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.359;QD=23.97;ReadPosRankSum=2.944;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:3,193:198:99:4747,510,0 chrII 281251 . A T 2345 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.33;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2378,261,0 chrII 287483 . G A 5080.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.1462;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.74;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5080,549,0 chrII 290619 . C T 2770 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.34;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2803,297,0 chrII 292835 . C T 3749.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3749,396,0 chrII 294812 . C T 3383.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3383,354,0 chrII 295710 . C G 4792.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.50;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4792,522,0 chrII 295912 . T C 2626 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.60;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2659,300,0 chrII 296073 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.70;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2138,225,0 chrII 296082 . C A 1845 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=23.06;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1878,201,0 chrII 296148 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DP=7;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=0.742;QD=1.72;ReadPosRankSum=-0.742;SB=-4.174e+01 GT:AD:DP:GQ:PL 1/1:1,6:7:6:43,6,0 chrII 296867 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.48;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3451,366,0 chrII 297226 . G A 4809.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.9815;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.23;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4809,511,0 chrII 298141 . C T 3994.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3994,421,0 chrII 298721 . G A 4280.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.1694;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.52;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4280,448,0 chrII 298966 . T C 2954 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.23;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2987,318,0 chrII 298990 . G A 2487 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5637;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.58;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2520,264,0 chrII 299034 . A G 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=4.015;HaplotypeScore=8.1382;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.157;QD=22.55;ReadPosRankSum=1.703;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2762,297,0 chrII 299174 . T C 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.472;QD=21.47;ReadPosRankSum=1.711;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3543,387,0 chrII 299196 . T C 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=176;Dels=0.00;FS=5.625;HaplotypeScore=9.1428;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.663;QD=21.34;ReadPosRankSum=2.937;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:3756,402,0 chrII 299389 . A G 6122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=243;Dels=0.00;FS=3.759;HaplotypeScore=11.2752;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;MQRankSum=-1.184;QD=25.19;ReadPosRankSum=1.703;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:1,239:243:99:6122,661,0 chrII 299524 . C T 4586.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=8.7721;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=18.64;SB=-3.179e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:4586,501,0 chrII 299553 . A T 119.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.709;DP=263;Dels=0.00;FS=2.902;HaplotypeScore=458.7807;MLEAC=1;MLEAF=0.500;MQ=38.95;MQ0=0;MQRankSum=2.612;QD=0.45;ReadPosRankSum=-5.396;SB=-1.120e+02 GT:AD:DP:GQ:PL 0/1:217,44:262:99:149,0,2012 chrII 299803 . C A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.9512;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=23.97;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3571,375,0 chrII 300849 . C T 362 filter AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.9809;MLEAC=2;MLEAF=1.00;MQ=12.77;MQ0=73;QD=2.51;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:30,113:144:45:395,45,0 chrII 301002 . T C 2259 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.03;MQ0=35;MQRankSum=-1.325;QD=16.49;ReadPosRankSum=1.698;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2292,249,0 chrII 301044 . C T 1387 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=68;Dels=0.00;FS=17.924;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=25.82;MQ0=6;MQRankSum=1.173;QD=20.40;ReadPosRankSum=-0.279;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1420,130,0 chrII 301399 . T C 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=1.074;QD=21.97;ReadPosRankSum=2.943;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2735,277,0 chrII 301406 . T A 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-1.732;QD=20.16;ReadPosRankSum=1.649;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2553,285,0 chrII 301455 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.9907;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.15;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,139:143:99:2915,315,0 chrII 301549 . C T 4358.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.1214;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=23.43;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4358,462,0 chrII 301569 . T C 4102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=3.944;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.756;QD=22.66;ReadPosRankSum=1.675;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4102,435,0 chrII 301570 . T C 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=4.016;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-1.403;QD=22.48;ReadPosRankSum=1.713;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4046,426,0 chrII 301937 . T A 4012.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.61;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4012,441,0 chrII 302104 . A G 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=150;Dels=0.00;FS=2.759;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.486;QD=23.61;ReadPosRankSum=2.400;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:2,146:150:99:3542,387,0 chrII 302245 . G C 4544.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.38;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4544,492,0 chrII 302473 . T C 6744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=293;Dels=0.00;FS=2.996;HaplotypeScore=14.3310;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.265;QD=23.02;ReadPosRankSum=2.408;SB=-3.579e+03 GT:AD:DP:GQ:PL 1/1:2,291:293:99:6744,724,0 chrII 302839 . T G 5059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=225;Dels=0.00;FS=3.522;HaplotypeScore=8.8807;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.670;QD=22.48;ReadPosRankSum=1.640;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5059,555,0 chrII 303125 . G A 3388.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.6586;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.06;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3388,357,0 chrII 303446 . C T 3078 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3111,336,0 chrII 303528 . C G 2448 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2481,270,0 chrII 304472 . G A 5446.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.8631;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.98;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5446,565,0 chrII 306136 . T C 1260 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.50;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1293,138,0 chrII 306242 . T G 1831 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.1148;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.89;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1864,216,0 chrII 308097 . A G 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.573;QD=22.60;ReadPosRankSum=1.709;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3458,393,0 chrII 308890 . A G 1257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.369;QD=20.61;ReadPosRankSum=1.675;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1290,141,0 chrII 310030 . T C 5442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=254;Dels=0.00;FS=4.129;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.752;QD=21.43;ReadPosRankSum=1.677;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:1,251:254:99:5442,589,0 chrII 310113 . G A 5322.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=18.4951;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.37;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5322,565,0 chrII 311608 . T G 3889.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.74;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3889,423,0 chrII 311662 . G T 2464 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2497,261,0 chrII 314198 . A G 4938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=229;Dels=0.00;FS=7.540;HaplotypeScore=12.0362;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.727;QD=21.56;ReadPosRankSum=2.385;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:2,226:229:99:4938,534,0 chrII 315267 . G T 3321.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.55;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3321,357,0 chrII 315318 . T A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3375,369,0 chrII 315453 . C T 2735 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.98;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2768,291,0 chrII 318379 . T C 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.378;QD=23.83;ReadPosRankSum=1.705;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3060,333,0 chrII 319900 . G A 4271.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.2433;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4271,465,0 chrII 320188 . T C 2004 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2037,219,0 chrII 320415 . T A 1484 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.90;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1517,162,0 chrII 320539 . A G 2154 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.67;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2187,249,0 chrII 320583 . G A 1991 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.8910;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=20.96;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2024,210,0 chrII 320597 . C T 1944 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=18.51;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1977,204,0 chrII 320632 . C T 1615 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;QD=12.82;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1648,174,0 chrII 320638 . C G 1606 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;QD=11.81;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:1639,183,0 chrII 320644 . T G 2072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.724;DP=157;Dels=0.00;FS=7.578;HaplotypeScore=2.9677;MLEAC=2;MLEAF=1.00;MQ=43.33;MQ0=0;MQRankSum=-2.514;QD=13.20;ReadPosRankSum=3.794;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:5,152:157:99:2105,225,0 chrII 320656 . A G 2793 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=15.35;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:2826,309,0 chrII 320788 . A T 4552.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.46;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4552,489,0 chrII 320851 . T C 5287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=-0.722;QD=24.03;ReadPosRankSum=1.652;SB=-2.864e+03 GT:AD:DP:GQ:PL 1/1:1,217:220:99:5287,573,0 chrII 320886 . C T 6152.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=23.84;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:6152,661,0 chrII 320988 . C A 3937.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.50;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3937,415,0 chrII 321385 . C A 3599.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.37;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3599,393,0 chrII 321438 . A G 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.7155;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.234;QD=23.84;ReadPosRankSum=1.637;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3481,372,0 chrII 321553 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3391,357,0 chrII 321857 . G C 3127 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3160,342,0 chrII 321906 . A G 3089 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.71;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3122,330,0 chrII 322122 . T C 4559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.601;QD=23.26;ReadPosRankSum=1.714;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4559,495,0 chrII 322182 . A T 4976.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.9834;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.12;SB=-2.840e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4976,543,0 chrII 322479 . T C 4028.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4028,447,0 chrII 322610 . G C 2667 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.05;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2700,291,0 chrII 322620 . G A 2769 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.50;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2802,294,0 chrII 322797 . A G 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=4.098;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.504;QD=21.51;ReadPosRankSum=1.649;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,166:170:99:3657,393,0 chrII 322869 . A G 4463.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.7168;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.65;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4463,483,0 chrII 322945 . G A 4797.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.06;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4797,502,0 chrII 322968 . T C 4235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.279;DP=206;Dels=0.00;FS=8.954;HaplotypeScore=16.1615;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.205;QD=20.56;ReadPosRankSum=3.400;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:4,198:206:99:4235,465,0 chrII 323106 . C T 4774.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.11;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4774,510,0 chrII 323184 . C T 4426.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.92;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4426,483,0 chrII 323214 . C G 4049.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.82;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4049,435,0 chrII 323577 . G A 4631.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,202:206:99:4631,507,0 chrII 324106 . A C 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.189;DP=152;Dels=0.00;FS=6.711;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.359;QD=21.97;ReadPosRankSum=2.385;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3340,363,0 chrII 324220 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.7499;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3137,342,0 chrII 324274 . C T 3143 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.46;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3176,351,0 chrII 324455 . T A 4726.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.0321;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.61;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4726,496,0 chrII 324525 . G A 5258.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.1711;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.37;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5258,567,0 chrII 324887 . A G 4897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=211;Dels=0.00;FS=2.884;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.273;QD=23.21;ReadPosRankSum=2.391;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:4897,531,0 chrII 324926 . T C 3962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=4.301;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.802;QD=22.64;ReadPosRankSum=1.653;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3962,426,0 chrII 325007 . G A 4087.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.71;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4087,441,0 chrII 325175 . T C 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=156;Dels=0.00;FS=2.810;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.142;QD=23.30;ReadPosRankSum=2.418;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3635,402,0 chrII 325202 . A G 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=185;Dels=0.00;FS=4.323;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.885;QD=22.42;ReadPosRankSum=1.638;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4148,450,0 chrII 325550 . A G 4112.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4112,444,0 chrII 325595 . T C 4447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=208;Dels=0.00;FS=2.972;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.817;QD=21.38;ReadPosRankSum=2.342;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:2,204:208:99:4447,480,0 chrII 325701 . T C 5005.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.0014;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.72;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:5005,555,0 chrII 326112 . A T 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-1.039;QD=24.19;ReadPosRankSum=1.642;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2815,291,0 chrII 326179 . A G 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=11.6117;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.158;QD=22.19;ReadPosRankSum=1.711;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3662,396,0 chrII 326297 . T C 2993 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.33;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:3026,327,0 chrII 326357 . C T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=22.02;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3281,345,0 chrII 326372 . C T 3468.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.81;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3468,363,0 chrII 326394 . A G 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=162;Dels=0.00;FS=3.260;HaplotypeScore=5.7141;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-1.711;QD=19.71;ReadPosRankSum=1.711;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3226,354,0 chrII 326660 . C T 2996 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.1203;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=22.19;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3029,321,0 chrII 326680 . C T 2531 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=19.47;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2564,282,0 chrII 326704 . G A 2648 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.73;MQ0=0;QD=18.52;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2681,279,0 chrII 326734 . T A 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=0;MQRankSum=0.448;QD=14.27;ReadPosRankSum=1.659;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2074,222,0 chrII 326744 . G A 1958 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.18;MQ0=0;QD=13.79;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1991,213,0 chrII 326754 . A G 1872 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.95;MQ0=0;QD=13.57;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1905,207,0 chrII 326757 . A T 1936 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.18;MQ0=0;QD=13.63;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1969,216,0 chrII 326765 . G T 1970 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=35.85;MQ0=0;QD=13.22;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2003,210,0 chrII 326899 . G A 3141 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=24.16;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3174,327,0 chrII 326919 . A T 3318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=146;Dels=0.00;FS=3.255;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;MQRankSum=0.024;QD=22.73;ReadPosRankSum=1.685;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3318,348,0 chrII 327083 . T C 3094 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=22.26;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3127,339,0 chrII 327098 . C A 2716 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=21.73;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2749,300,0 chrII 327156 . T A 3449.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=23.62;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3449,366,0 chrII 327179 . A G 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.5159;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=1.083;QD=23.46;ReadPosRankSum=1.645;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3754,402,0 chrII 327300 . C A 2352 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=21.38;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2385,252,0 chrII 327327 . C T 1781 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=19.79;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1814,198,0 chrII 327363 . C T 1887 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=16.7559;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=18.87;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1920,216,0 chrII 327403 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=24.41;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2572,273,0 chrII 327596 . A G 2436 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=23.88;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2469,267,0 chrII 327608 . C G 2477 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.92;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2510,273,0 chrII 327972 . T C 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.445;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-0.495;QD=23.59;ReadPosRankSum=1.677;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3005,318,0 chrII 327989 . T C 2832 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=21.29;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2865,324,0 chrII 328001 . T C 2883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=3.854;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.993;QD=21.20;ReadPosRankSum=-1.656;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2916,309,0 chrII 328068 . C T 3695.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.67;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3695,396,0 chrII 328093 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.28;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3701,405,0 chrII 328179 . A G 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=153;Dels=0.00;FS=13.970;HaplotypeScore=10.4318;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.107;QD=24.48;ReadPosRankSum=2.953;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:3,147:153:99:3746,402,0 chrII 328278 . A C 3691.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.21;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3691,399,0 chrII 328525 . A G 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=157;Dels=0.00;FS=5.671;HaplotypeScore=5.5531;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-0.083;QD=18.17;ReadPosRankSum=2.930;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:2886,318,0 chrII 328531 . G A 2906 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=19.25;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2939,309,0 chrII 328557 . A G 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.895;QD=17.54;ReadPosRankSum=1.703;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2155,240,0 chrII 328647 . A G 3100 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.68;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3133,339,0 chrII 328908 . A G 3510.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.2486;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.94;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3510,393,0 chrII 329472 . T C 1861 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.59;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1894,204,0 chrII 329583 . C A 2265 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.45;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2298,252,0 chrII 329654 . C T 1032 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1065,114,0 chrII 329730 . T C 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.352;QD=25.37;ReadPosRankSum=1.690;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:2113,225,0 chrII 329757 . C A 2477 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.72;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2510,270,0 chrII 329976 . T C 3063 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.20;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3096,336,0 chrII 330203 . T A 1648 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.86;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1681,177,0 chrII 330474 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.46;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1628,177,0 chrII 330495 . C A 1465 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.2603;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.35;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1498,165,0 chrII 330647 . C T 2802 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.58;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2835,303,0 chrII 331253 . C T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.1266;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.24;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3626,384,0 chrII 331350 . A G 4437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=199;Dels=0.00;FS=10.952;HaplotypeScore=11.6973;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-1.726;QD=22.30;ReadPosRankSum=2.924;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:3,195:199:99:4437,477,0 chrII 331378 . G A 4166.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=17.4663;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.59;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,188:193:99:4166,447,0 chrII 331446 . T A 5479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=231;Dels=0.00;FS=2.866;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-2.141;QD=23.72;ReadPosRankSum=2.407;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:5479,606,0 chrII 331527 . A G 5949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.223;DP=264;Dels=0.00;FS=9.107;HaplotypeScore=14.8181;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.010;QD=22.53;ReadPosRankSum=3.369;SB=-3.383e+03 GT:AD:DP:GQ:PL 1/1:4,260:264:99:5949,646,0 chrII 331557 . G A 5510.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.60;SB=-2.842e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5510,583,0 chrII 331783 . G A 4927.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.2587;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.57;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4927,526,0 chrII 331804 . A G 4544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=200;Dels=0.00;FS=6.539;HaplotypeScore=6.4989;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=1.487;QD=22.72;ReadPosRankSum=2.425;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:4544,492,0 chrII 331937 . A G 2971 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.03;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3004,333,0 chrII 331973 . T C 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.500;DP=149;Dels=0.00;FS=4.572;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.244;QD=21.32;ReadPosRankSum=1.686;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3209,351,0 chrII 332399 . A G 2412 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=21.54;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2445,264,0 chrII 332412 . T C 2262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=121;Dels=0.00;FS=7.867;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;MQRankSum=-0.573;QD=18.69;ReadPosRankSum=2.408;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:2,116:121:99:2295,246,0 chrII 332422 . G T 2315 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;QD=19.45;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2348,249,0 chrII 332452 . C T 1339 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=14.24;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1372,147,0 chrII 332471 . G A 1750 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=16.20;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1783,186,0 chrII 332654 . T C 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=179;Dels=0.00;FS=5.684;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-0.294;QD=22.59;ReadPosRankSum=2.859;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:4044,444,0 chrII 332772 . A G 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-1.709;QD=22.67;ReadPosRankSum=1.709;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3378,375,0 chrII 332940 . C G 2286 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=23.09;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2319,243,0 chrII 332992 . C G 2341 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=22.73;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2374,258,0 chrII 333015 . A G 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.532;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=0.294;QD=22.97;ReadPosRankSum=1.699;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2468,267,0 chrII 333043 . C T 2257 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=20.71;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2290,243,0 chrII 333044 . C T 2206 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=20.24;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2239,243,0 chrII 333194 . G A 1782 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=15.50;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1815,195,0 chrII 333196 . A G 1698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=115;Dels=0.00;FS=8.016;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;MQRankSum=-1.380;QD=14.77;ReadPosRankSum=2.407;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:1731,189,0 chrII 333214 . A G 1844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=116;Dels=0.00;FS=3.667;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=-0.820;QD=15.90;ReadPosRankSum=1.702;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:1877,210,0 chrII 333270 . A T 2306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.106;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;MQRankSum=-0.518;QD=16.83;ReadPosRankSum=1.707;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2339,246,0 chrII 333321 . G A 2680 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=19.56;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2713,285,0 chrII 333347 . T A 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=0.067;QD=23.02;ReadPosRankSum=1.710;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3591,393,0 chrII 333382 . T A 4441.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.6291;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=23.75;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4441,477,0 chrII 334051 . G A 1014 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.73;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1047,111,0 chrII 334070 . T C 863 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.55;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:896,99,0 chrII 334452 . G A 2520 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2553,282,0 chrII 335049 . T A 6543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=19.1521;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.260;QD=23.37;ReadPosRankSum=0.755;SB=-3.777e+03 GT:AD:DP:GQ:PL 1/1:1,279:280:99:6543,709,0 chrII 335310 . A G 5230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=24.6571;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.328;QD=21.79;ReadPosRankSum=1.703;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:1,239:240:99:5230,567,0 chrII 335995 . G C 6108.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=8.3416;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.95;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,252:255:99:6108,655,0 chrII 336720 . G A 6053.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=11.1290;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.10;SB=-3.359e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:6053,631,0 chrII 336747 . A G 5098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.502;DP=240;Dels=0.00;FS=13.592;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.288;QD=21.24;ReadPosRankSum=4.469;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:7,230:240:99:5098,555,0 chrII 337074 . G A 3780.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=19.48;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3780,417,0 chrII 337088 . A C 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=189;Dels=0.00;FS=5.898;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-1.176;QD=19.63;ReadPosRankSum=2.729;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:3,186:189:99:3710,402,0 chrII 337181 . A G 3908.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=60.75;MQ0=0;QD=25.54;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3908,417,0 chrII 337320 . C A 4623.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=30.4056;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.81;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4623,490,0 chrII 337526 . T C 5401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=254;Dels=0.00;FS=7.573;HaplotypeScore=19.0783;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.421;QD=21.26;ReadPosRankSum=2.400;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:2,246:254:99:5401,585,0 chrII 337567 . A G 6233.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=12.2835;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.50;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:6233,667,0 chrII 337611 . T C 6851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=304;Dels=0.00;FS=4.786;HaplotypeScore=11.7116;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.006;QD=22.54;ReadPosRankSum=1.721;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:1,301:304:99:6851,733,0 chrII 337897 . G A 2351 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.05;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2384,261,0 chrII 338292 . G T 3197 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.75;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3230,354,0 chrII 338656 . A T 4540.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.27;SB=-2.917e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4540,484,0 chrII 338664 . A T 4430.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=5.7979;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.69;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4430,480,0 chrII 339083 . T G 3589.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3589,387,0 chrII 339200 . C T 4180.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.6130;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.62;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4180,447,0 chrII 339228 . C T 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.425;QD=22.81;ReadPosRankSum=0.156;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3809,399,0 chrII 339326 . A G 2650 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.46;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2683,282,0 chrII 339413 . C T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.6220;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.28;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4005,432,0 chrII 339511 . G A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.89;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3846,429,0 chrII 339542 . G A 4127.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.0781;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.93;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4127,421,0 chrII 339568 . A G 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=172;Dels=0.00;FS=9.093;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-0.817;QD=21.23;ReadPosRankSum=2.392;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3651,393,0 chrII 339674 . C T 3963.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.31;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3963,417,0 chrII 339739 . T C 5015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.8491;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.029;QD=23.22;ReadPosRankSum=2.381;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:5015,533,0 chrII 339902 . A G 4529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=198;Dels=0.00;FS=6.403;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.229;QD=22.87;ReadPosRankSum=2.412;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4529,481,0 chrII 339903 . A G 4466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=199;Dels=0.00;FS=6.355;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-1.191;QD=22.44;ReadPosRankSum=2.376;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4466,480,0 chrII 339966 . G A 4492.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.69;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4492,483,0 chrII 340305 . A G 3600.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3600,393,0 chrII 340466 . G A 4437.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.35;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4437,463,0 chrII 340644 . G A 3462.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.05;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3462,372,0 chrII 340743 . A C 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.674;QD=21.00;ReadPosRankSum=1.660;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,143:147:99:3120,339,0 chrII 340824 . G A 3769.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3769,414,0 chrII 341038 . C T 3845.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.88;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3845,426,0 chrII 341186 . T C 5241.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.72;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5241,579,0 chrII 341216 . G A 3672.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.67;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3672,390,0 chrII 341233 . A G 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=151;Dels=0.00;FS=3.921;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-1.732;QD=19.87;ReadPosRankSum=1.685;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,147:151:99:3034,330,0 chrII 341309 . A G 4215.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.1447;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.36;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4215,459,0 chrII 341391 . T A 4526.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.09;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4526,501,0 chrII 341451 . A G 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=159;Dels=0.00;FS=2.891;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-0.070;QD=22.48;ReadPosRankSum=2.418;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3574,384,0 chrII 341567 . A C 3001 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.2384;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.44;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3034,336,0 chrII 341715 . T C 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=120;Dels=0.00;FS=2.826;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.320;QD=22.29;ReadPosRankSum=2.346;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2708,291,0 chrII 341837 . G A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=20.75;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4067,429,0 chrII 341985 . C T 4052.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.9425;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;QD=19.02;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4052,424,0 chrII 342004 . A G 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=203;Dels=0.00;FS=3.937;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=40.97;MQ0=0;MQRankSum=-1.220;QD=16.14;ReadPosRankSum=1.698;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:3277,354,0 chrII 342023 . G A 2175 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=11.63;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:2208,240,0 chrII 342025 . G C 2349 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=0;QD=12.63;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:2382,258,0 chrII 342041 . A G 1859 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.22;MQ0=0;QD=10.94;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:1892,207,0 chrII 342048 . A C 1912 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;QD=11.05;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:1945,210,0 chrII 342383 . G T 4069.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.7953;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.88;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4069,441,0 chrII 342723 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.06;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2265,237,0 chrII 343086 . A T 1186 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=5.9084;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1219,129,0 chrII 343406 . C T 4894.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.8105;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.10;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4894,520,0 chrII 343713 . A G 5302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=242;Dels=0.00;FS=2.862;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.015;QD=21.91;ReadPosRankSum=2.378;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:2,237:242:99:5302,582,0 chrII 343838 . G A 5538.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.29;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:5538,595,0 chrII 343845 . C T 5420.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.61;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:5420,580,0 chrII 343970 . T C 5252.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=221;Dels=0.00;FS=3.110;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=1.058;QD=23.76;ReadPosRankSum=1.669;SB=-2.928e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:5252,565,0 chrII 344093 . A G 4658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=197;Dels=0.00;FS=2.911;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.480;QD=23.64;ReadPosRankSum=2.412;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4658,496,0 chrII 344211 . C T 2570 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=21.97;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2603,282,0 chrII 344225 . C T 2152 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.2988;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=19.93;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2185,243,0 chrII 344282 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8791;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.98;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2825,309,0 chrII 344668 . G A 4235.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.06;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4235,465,0 chrII 344938 . C T 3218.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.50;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3251,348,0 chrII 345172 . C T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.71;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3367,354,0 chrII 345288 . A G 2341 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2374,258,0 chrII 345802 . A G 3640.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.04;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3640,411,0 chrII 346125 . T C 3798.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.88;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3798,408,0 chrII 346363 . A G 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.1491;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.326;QD=20.68;ReadPosRankSum=1.651;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2680,291,0 chrII 346437 . C T 2734 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.53;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2767,300,0 chrII 346636 . A G 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=3.310;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.126;QD=24.42;ReadPosRankSum=1.674;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2963,315,0 chrII 346663 . A G 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=3.288;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.843;QD=24.32;ReadPosRankSum=1.671;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2806,303,0 chrII 346741 . G A 3004 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.9747;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3037,315,0 chrII 347227 . T C 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.038;QD=21.20;ReadPosRankSum=1.707;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2937,315,0 chrII 347231 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.58;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3011,315,0 chrII 347317 . C T 3061 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6997;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.14;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3094,327,0 chrII 347559 . A T 1839 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=21.38;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1872,201,0 chrII 347560 . A G 1804 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=20.98;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1837,198,0 chrII 347777 . A G 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=3.177;HaplotypeScore=6.6619;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-1.177;QD=23.43;ReadPosRankSum=1.699;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2517,282,0 chrII 347803 . T A 2590 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=23.98;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2623,279,0 chrII 347856 . T G 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=107;Dels=0.00;FS=2.603;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=1.029;QD=22.83;ReadPosRankSum=2.915;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:3,103:107:99:2476,264,0 chrII 347935 . T C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.586;QD=25.62;ReadPosRankSum=1.679;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3330,354,0 chrII 348625 . T C 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=15.8053;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.280;QD=23.35;ReadPosRankSum=1.711;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3759,405,0 chrII 348820 . G A 5019.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=19.6036;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5019,535,0 chrII 349415 . A T 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=3.432;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.032;QD=22.81;ReadPosRankSum=1.668;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2497,267,0 chrII 351335 . G A 4200.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4200,447,0 chrII 351799 . C G 1919 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1952,210,0 chrII 353632 . A G 106.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.024;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=3.1209;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.778;QD=7.58;ReadPosRankSum=0.934;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,11:14:18:139,18,0 chrII 353634 . A G 227 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=16.21;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:33:260,33,0 chrII 355349 . C T 4389.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.7352;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.39;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4389,466,0 chrII 355626 . G A 4136.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4512;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.48;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4136,447,0 chrII 355836 . A G 4244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.4626;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-2.014;QD=22.46;ReadPosRankSum=2.133;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:2,185:189:99:4244,450,0 chrII 356477 . A G 4655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=197;Dels=0.00;FS=13.416;HaplotypeScore=18.1791;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.781;QD=23.63;ReadPosRankSum=2.903;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:3,194:197:99:4655,504,0 chrII 357199 . A G 5425.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=15.2507;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.03;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5425,588,0 chrII 359006 . G A 3670.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.68;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3670,387,0 chrII 359116 . G A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0562;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.59;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3659,387,0 chrII 359471 . A G 4206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=176;Dels=0.00;FS=3.918;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.703;QD=23.90;ReadPosRankSum=1.673;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4206,450,0 chrII 359576 . C T 4595.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.6751;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.57;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4595,492,0 chrII 359654 . G A 4038.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.25;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4038,418,0 chrII 359662 . A G 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-0.147;QD=19.45;ReadPosRankSum=1.595;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3482,378,0 chrII 359957 . C T 4771.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.93;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,224:228:99:4771,516,0 chrII 359978 . C T 5152.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=16.0541;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.30;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5152,550,0 chrII 360477 . A C 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=126;Dels=0.00;FS=3.032;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.207;QD=21.31;ReadPosRankSum=2.391;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2718,294,0 chrII 360862 . T C 4294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=184;Dels=0.00;FS=2.790;HaplotypeScore=13.9491;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.914;QD=23.34;ReadPosRankSum=2.316;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4294,468,0 chrII 361468 . T C 3485.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.72;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3485,378,0 chrII 361648 . G T 2353 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.20;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2386,258,0 chrII 361669 . G A 2157 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.47;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2190,234,0 chrII 362082 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.15;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2689,288,0 chrII 362354 . C T 4255.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=22.39;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:4255,442,0 chrII 362377 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.78;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3346,363,0 chrII 362543 . C G 3484.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.6537;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=22.92;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3484,375,0 chrII 362638 . C T 2940 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.6999;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=18.61;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2973,321,0 chrII 362688 . T G 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.661;QD=20.18;ReadPosRankSum=2.942;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:3,187:190:99:3834,438,0 chrII 362702 . C T 4403.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.1582;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.13;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4403,463,0 chrII 362748 . T C 4068.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.86;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4068,450,0 chrII 362789 . T G 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=0.108;QD=21.09;ReadPosRankSum=1.696;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4071,447,0 chrII 362800 . G C 3797.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=20.98;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3797,405,0 chrII 362833 . C T 4619.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.1258;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=21.69;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4619,501,0 chrII 362997 . A G 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.5594;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=1.159;QD=20.01;ReadPosRankSum=1.709;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3094,336,0 chrII 363144 . T C 2805 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=22.09;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2838,309,0 chrII 363224 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=21.98;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2715,285,0 chrII 363228 . T C 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.087;QD=21.42;ReadPosRankSum=1.703;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2603,285,0 chrII 363277 . C G 2573 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.4607;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.09;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2606,282,0 chrII 363362 . A G 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-0.478;QD=24.16;ReadPosRankSum=1.672;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2835,306,0 chrII 363386 . G A 2608 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=23.50;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2641,276,0 chrII 363408 . A G 2057 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=19.05;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2090,231,0 chrII 363414 . A G 1892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=105;Dels=0.00;FS=5.725;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;MQRankSum=1.106;QD=18.02;ReadPosRankSum=2.895;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:3,102:105:99:1925,207,0 chrII 363574 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.02;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.67;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2000,219,0 chrII 363616 . T C 2670 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=22.82;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2703,288,0 chrII 363700 . T G 2487 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=20.72;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2520,270,0 chrII 363721 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.02;FS=0.000;HaplotypeScore=7.1981;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=19.72;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2478,264,0 chrII 363749 . A C 2450 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=136.9391;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=15.71;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2483,267,0 chrII 363765 . T A 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=151.8274;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;MQRankSum=-0.793;QD=14.49;ReadPosRankSum=1.713;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:2613,285,0 chrII 364073 . C T 4758.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.01;FS=0.000;HaplotypeScore=19.7916;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=24.40;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4758,510,0 chrII 364161 . T C 4569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=1.195;QD=24.43;ReadPosRankSum=1.677;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4569,492,0 chrII 364205 . C T 4638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=197;Dels=0.00;FS=3.100;HaplotypeScore=10.7749;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=0.177;QD=23.54;ReadPosRankSum=1.714;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4638,485,0 chrII 364373 . C T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=24.23;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3755,411,0 chrII 364408 . A G 2117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.254;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-0.313;QD=20.36;ReadPosRankSum=3.321;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:4,100:104:99:2150,231,0 chrII 364419 . C T 1709 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.59;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,79:83:99:1742,183,0 chrII 364642 . A G 797 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.97;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:96:830,96,0 chrII 364895 . C T 2939 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.51;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2972,321,0 chrII 365120 . A C 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=196;Dels=0.00;FS=7.345;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=1.165;QD=20.42;ReadPosRankSum=2.387;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:4003,444,0 chrII 365126 . C T 4103.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.83;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4103,441,0 chrII 365306 . G A 6162.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=22.49;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6162,652,0 chrII 365326 . A G 5497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=258;Dels=0.00;FS=3.552;HaplotypeScore=14.2172;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-1.664;QD=21.31;ReadPosRankSum=1.705;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:1,255:258:99:5497,583,0 chrII 365525 . C T 5206.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=23.5078;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.60;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5206,567,0 chrII 365830 . G A 1870 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1903,201,0 chrII 366120 . C T 3204 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.73;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3237,342,0 chrII 366264 . C T 4647.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=16.8909;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4647,501,0 chrII 366323 . T A 5413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=13.2517;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.254;QD=23.33;ReadPosRankSum=1.717;SB=-2.882e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5413,571,0 chrII 366409 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=14.0173;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.85;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3300,366,0 chrII 366754 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2234,234,0 chrII 366921 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8894;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.25;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3056,330,0 chrII 366946 . G C 2833 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.5457;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.30;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,129:133:99:2866,309,0 chrII 367200 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.67;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3559,384,0 chrII 367429 . T C 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-1.120;QD=23.54;ReadPosRankSum=1.711;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3908,423,0 chrII 367502 . T C 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=180;Dels=0.00;FS=5.739;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.291;QD=21.36;ReadPosRankSum=2.928;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:3844,405,0 chrII 367503 . T C 3678.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.66;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3678,399,0 chrII 367531 . C T 3738.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.5529;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.48;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3738,396,0 chrII 367587 . A G 3728.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.55;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3728,405,0 chrII 367601 . C T 3968.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=22.55;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3968,417,0 chrII 367774 . A T 4518.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.8526;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.78;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4518,489,0 chrII 367802 . A G 5104.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=25.27;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5104,550,0 chrII 367884 . A G 3002 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=25.02;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3035,324,0 chrII 368051 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.85;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2940,306,0 chrII 368084 . G T 2400 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.62;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2433,255,0 chrII 368093 . C T 2292 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.46;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2325,249,0 chrII 368247 . T C 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=104;Dels=0.00;FS=3.274;HaplotypeScore=10.0875;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.257;QD=22.51;ReadPosRankSum=1.698;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2374,264,0 chrII 368496 . C T 2643 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.66;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2676,276,0 chrII 368536 . T C 2728 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=20.36;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2761,306,0 chrII 368563 . A G 2619 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=19.40;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2652,291,0 chrII 368565 . G A 2563 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=18.99;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2596,285,0 chrII 368583 . T C 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.289;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-1.111;QD=19.28;ReadPosRankSum=1.660;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2828,303,0 chrII 368630 . T G 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.650;QD=19.41;ReadPosRankSum=1.310;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2440,264,0 chrII 369040 . C T 3385.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.1349;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.51;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3385,366,0 chrII 369085 . T C 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.278;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.060;QD=23.41;ReadPosRankSum=1.706;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3170,351,0 chrII 369657 . G A 3177 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.90;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3210,339,0 chrII 369692 . C T 3523.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=16.9350;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.22;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3523,387,0 chrII 369831 . G C 1608 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.8696;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=15.46;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1641,180,0 chrII 369847 . A C 1898 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=9.0453;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=17.57;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1931,210,0 chrII 370007 . T G 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.669;DP=145;Dels=0.00;FS=5.377;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.232;QD=22.60;ReadPosRankSum=2.909;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:3,140:145:99:3277,351,0 chrII 370707 . T C 1543 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1576,168,0 chrII 370780 . T G 1178 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.1792;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.42;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1211,132,0 chrII 370967 . C T 2011 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=25.46;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2044,213,0 chrII 371029 . A G 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=3.979;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.449;QD=22.18;ReadPosRankSum=1.575;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2473,267,0 chrII 371139 . T G 2235 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.3097;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=17.33;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2268,246,0 chrII 371146 . C T 1988 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=16.16;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2021,222,0 chrII 371555 . C T 3557.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.71;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3557,384,0 chrII 371598 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.666;DP=148;Dels=0.00;FS=9.089;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-1.945;QD=0.12;ReadPosRankSum=-2.832;SB=-1.628e+02 GT:AD:DP:GQ:PL 1/1:144,4:148:6:49,6,0 chrII 371601 . C G 123.13 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.2383;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=0.83;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,143:148:18:156,18,0 chrII 371707 . C G 3224.03 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.2199;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=19.42;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3257,366,0 chrII 371746 . A C 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=143;Dels=0.00;FS=10.404;HaplotypeScore=13.6010;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.607;QD=22.43;ReadPosRankSum=2.907;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:3,138:143:99:3241,351,0 chrII 371941 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.25;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2943,315,0 chrII 372481 . A G 7779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=332;Dels=0.00;FS=9.076;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.260;QD=23.43;ReadPosRankSum=3.304;SB=-4.325e+03 GT:AD:DP:GQ:PL 1/1:4,328:332:99:7779,838,0 chrII 372547 . A G 7039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=305;Dels=0.00;FS=5.709;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.319;QD=23.08;ReadPosRankSum=2.918;SB=-3.569e+03 GT:AD:DP:GQ:PL 1/1:3,302:305:99:7039,754,0 chrII 372730 . G A 4303.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.1860;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.07;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4303,468,0 chrII 372845 . G A 3285.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.7109;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.51;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3285,354,0 chrII 372954 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=17.36;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:2689,285,0 chrII 372958 . T C 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=146;Dels=0.00;FS=2.966;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.771;QD=20.02;ReadPosRankSum=2.382;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:2956,327,0 chrII 373487 . C G 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.7332;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=1.041;QD=16.70;ReadPosRankSum=0.900;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:2672,291,0 chrII 373488 . A C 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.135;DP=157;Dels=0.00;FS=2.347;HaplotypeScore=5.7332;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.096;QD=16.70;ReadPosRankSum=1.058;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:2655,291,0 chrII 373603 . T C 3165 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.13;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3198,345,0 chrII 373731 . G A 4256.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=20.2848;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=25.49;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4256,448,0 chrII 373782 . A G 4468.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=24.69;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4468,489,0 chrII 374149 . G C 4752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.515;DP=211;Dels=0.00;FS=3.382;HaplotypeScore=19.3672;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.682;QD=22.52;ReadPosRankSum=1.448;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:1,207:211:99:4752,516,0 chrII 375303 . T C 4292.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.3941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4292,456,0 chrII 375370 . T A 4546.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.6495;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.07;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4546,489,0 chrII 375505 . C T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.6712;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.42;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3770,399,0 chrII 375801 . T C 3724.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3724,399,0 chrII 375942 . T C 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=177;Dels=0.00;FS=2.583;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-0.370;QD=24.64;ReadPosRankSum=2.324;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:4362,474,0 chrII 375972 . G A 4172.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=24.12;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4172,438,0 chrII 376093 . C T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.8480;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.79;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3759,396,0 chrII 376172 . C T 2390 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.03;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=13.06;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:2423,255,0 chrII 376186 . C T 2587 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=14.95;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2620,276,0 chrII 376375 . G A 2213 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.08;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2246,237,0 chrII 376703 . C T 4194.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=25.73;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4194,439,0 chrII 376898 . C T 5993.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=6.9729;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.41;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:5993,625,0 chrII 376916 . G T 5423.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=12.8695;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.27;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5423,583,0 chrII 377588 . A G 5376.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=20.4975;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=21.42;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:0,247:251:99:5376,606,0 chrII 377622 . T C 4982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=227;Dels=0.00;FS=5.995;HaplotypeScore=14.3919;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.323;QD=21.95;ReadPosRankSum=2.942;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:3,222:227:99:4982,540,0 chrII 377657 . T C 5201.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=16.7076;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.80;SB=-3.110e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5201,579,0 chrII 377735 . C T 5130.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.1954;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=21.55;SB=-3.069e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5130,535,0 chrII 377765 . T G 4544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=243;Dels=0.00;FS=6.558;HaplotypeScore=5.9046;MLEAC=2;MLEAF=1.00;MQ=41.80;MQ0=0;MQRankSum=-1.567;QD=18.70;ReadPosRankSum=2.429;SB=-3.114e+03 GT:AD:DP:GQ:PL 1/1:2,240:243:99:4544,486,0 chrII 377771 . A G 4458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=254;Dels=0.00;FS=3.019;HaplotypeScore=6.7532;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;MQRankSum=-1.266;QD=17.55;ReadPosRankSum=2.410;SB=-3.180e+03 GT:AD:DP:GQ:PL 1/1:2,249:254:99:4458,486,0 chrII 377776 . T C 4610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=260;Dels=0.00;FS=6.207;HaplotypeScore=7.7146;MLEAC=2;MLEAF=1.00;MQ=41.60;MQ0=0;MQRankSum=-1.407;QD=17.73;ReadPosRankSum=2.421;SB=-3.384e+03 GT:AD:DP:GQ:PL 1/1:2,257:260:99:4610,495,0 chrII 377807 . G T 3296.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.63;MQ0=0;QD=13.29;SB=-2.998e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:3296,360,0 chrII 377820 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;QD=13.05;SB=-3.128e+03 GT:AD:DP:GQ:PL 1/1:0,250:253:99:3302,354,0 chrII 377822 . A G 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=257;Dels=0.00;FS=3.441;HaplotypeScore=4.2188;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;MQRankSum=0.750;QD=12.54;ReadPosRankSum=1.705;SB=-3.133e+03 GT:AD:DP:GQ:PL 1/1:1,253:257:99:3256,357,0 chrII 377867 . G A 5261.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=12.9239;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.52;SB=-3.154e+03 GT:AD:DP:GQ:PL 1/1:0,283:284:99:5261,567,0 chrII 378164 . C T 3925.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.1904;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=18.87;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:3925,438,0 chrII 378189 . A C 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=208;Dels=0.00;FS=5.477;HaplotypeScore=16.4033;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.946;QD=19.41;ReadPosRankSum=2.886;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:3,200:208:99:4038,453,0 chrII 378523 . G A 3522.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.6646;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;QD=21.22;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3522,375,0 chrII 378868 . C G 3904.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.1077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:3904,417,0 chrII 379311 . T C 3912.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.7137;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.01;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3912,423,0 chrII 379421 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=147;Dels=0.00;FS=6.061;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.229;QD=22.82;ReadPosRankSum=2.910;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:3,142:147:99:3355,354,0 chrII 379464 . A G 3352.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=21.91;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3352,360,0 chrII 379470 . G A 3429.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.7666;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.04;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3429,363,0 chrII 379598 . T C 2922 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8357;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.31;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2955,321,0 chrII 379969 . C T 2968 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.90;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3001,327,0 chrII 380911 . T C 3031 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.02;FS=0.000;HaplotypeScore=43.6447;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=17.32;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3064,345,0 chrII 380932 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=18.12;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:2932,312,0 chrII 380971 . C T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.43;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3290,351,0 chrII 381431 . A T 4068.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.6600;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.79;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4068,438,0 chrII 381522 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;QD=16.83;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:3786,408,0 chrII 382471 . G T 6042.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=13.6021;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.07;SB=-3.183e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:6042,631,0 chrII 382571 . A G 4942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=20.3806;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-1.132;QD=21.21;ReadPosRankSum=1.717;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:4942,523,0 chrII 382581 . G A 4311.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.4493;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.14;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4311,468,0 chrII 382644 . G A 4133.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.10;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4133,441,0 chrII 382823 . A G 3775.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=24.20;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3775,408,0 chrII 382880 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.99;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2608,276,0 chrII 382911 . C T 2095 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=20.74;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2128,231,0 chrII 382963 . T C 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=4.851;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.819;QD=19.79;ReadPosRankSum=1.638;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2210,240,0 chrII 383124 . A T 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.246;DP=142;Dels=0.01;FS=17.878;HaplotypeScore=20.1764;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.582;QD=19.86;ReadPosRankSum=3.383;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:4,136:140:99:2853,303,0 chrII 383390 . C T 4297.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.87;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4297,465,0 chrII 383707 . G A 4787.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.4977;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4787,505,0 chrII 383768 . C T 4346.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.5607;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.42;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4346,454,0 chrII 384206 . G A 3967.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.11;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3967,412,0 chrII 384458 . C T 2466 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.69;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2499,264,0 chrII 384578 . G A 2211 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2244,237,0 chrII 384692 . T C 2921 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.75;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2954,315,0 chrII 384884 . C T 3949.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.99;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3949,415,0 chrII 385111 . A G 4696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.689;DP=205;Dels=0.00;FS=12.105;HaplotypeScore=14.2915;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.199;QD=22.91;ReadPosRankSum=3.812;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:6,199:205:99:4696,501,0 chrII 385403 . T G 3342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=3.582;HaplotypeScore=8.9135;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.308;QD=22.73;ReadPosRankSum=1.685;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3342,372,0 chrII 385445 . T C 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=171;Dels=0.00;FS=6.910;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.163;QD=23.33;ReadPosRankSum=2.406;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3989,426,0 chrII 385559 . G A 3634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.442;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.6093;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.883;QD=23.29;ReadPosRankSum=0.972;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3634,375,0 chrII 385766 . A T 4376.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.0595;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.18;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4376,471,0 chrII 385829 . A G 3864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.245;QD=20.13;ReadPosRankSum=1.696;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,190:192:99:3864,423,0 chrII 385925 . A C 3917.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.49;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,200:201:99:3917,417,0 chrII 386202 . A G 765 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.5427;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.21;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:87:798,87,0 chrII 386474 . C T 3144 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.76;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3177,339,0 chrII 386919 . G A 3970.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.35;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3970,435,0 chrII 386954 . A T 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=199;Dels=0.00;FS=3.694;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.757;QD=20.38;ReadPosRankSum=1.715;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4056,447,0 chrII 386957 . T C 4123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=0.009;QD=21.36;ReadPosRankSum=1.696;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4123,438,0 chrII 387022 . G A 2841 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.2312;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.33;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2874,306,0 chrII 387453 . T C 2472 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.68;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2505,276,0 chrII 387602 . A T 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.356;QD=21.22;ReadPosRankSum=1.652;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2770,306,0 chrII 387923 . T C 4470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.0575;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.966;QD=21.49;ReadPosRankSum=1.715;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4470,477,0 chrII 387935 . G A 3868.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.5587;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.54;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3868,423,0 chrII 387954 . C T 4368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=226;Dels=0.00;FS=3.167;HaplotypeScore=12.5586;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=1.257;QD=19.33;ReadPosRankSum=1.671;SB=-3.065e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4368,457,0 chrII 388325 . C G 3397.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.35;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3397,369,0 chrII 388687 . T C 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=3.114;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.897;QD=23.58;ReadPosRankSum=1.712;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4032,432,0 chrII 388769 . G T 5002.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.7053;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5002,537,0 chrII 388878 . G A 3175 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.1330;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=23.52;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3208,333,0 chrII 388901 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.86;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3181,339,0 chrII 389007 . G T 2742 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.85;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2775,291,0 chrII 389242 . T C 874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=42;Dels=0.00;FS=9.760;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-0.207;QD=20.81;ReadPosRankSum=2.333;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:2,40:42:96:907,96,0 chrII 389243 . T C 868 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=20.67;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:96:901,96,0 chrII 389341 . G A 466 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=0;QD=19.42;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:54:499,54,0 chrII 389411 . A C 530 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=24.09;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:60:563,60,0 chrII 389492 . T C 314 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=14.95;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:36:347,36,0 chrII 389557 . G A 510 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=16.2033;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=0;QD=16.45;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:60:543,60,0 chrII 389570 . C T 473 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.76;MQ0=0;QD=16.31;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:54:506,54,0 chrII 389571 . C T 504 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.76;MQ0=0;QD=17.38;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:57:537,57,0 chrII 389585 . C T 590 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;QD=18.44;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:66:623,66,0 chrII 389614 . A G 407 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.06;MQ0=0;QD=15.07;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:48:440,48,0 chrII 389620 . G A 387 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.27;MQ0=0;QD=14.88;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:45:420,45,0 chrII 389683 . G A 544 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=14.32;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:60:577,60,0 chrII 389687 . T C 537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;MQRankSum=-0.817;QD=13.10;ReadPosRankSum=2.330;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:63:570,63,0 chrII 389867 . C T 1884 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=21.66;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1917,207,0 chrII 389875 . T C 1785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=87;Dels=0.00;FS=2.510;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=0.494;QD=20.52;ReadPosRankSum=2.801;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1818,198,0 chrII 389912 . G A 2629 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=20.70;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2662,291,0 chrII 389935 . C A 2762 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=20.46;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2795,288,0 chrII 390133 . A G 3187 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.25;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3220,351,0 chrII 390139 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.00;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3454,357,0 chrII 390252 . C T 3910.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.70;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3910,423,0 chrII 390461 . A T 2724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.462;QD=22.70;ReadPosRankSum=1.674;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2757,297,0 chrII 390676 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.6517;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2536,273,0 chrII 390823 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2879,306,0 chrII 390895 . A T 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.637;DP=126;Dels=0.00;FS=1.867;HaplotypeScore=14.4589;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.075;QD=23.33;ReadPosRankSum=2.787;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:5,121:126:99:2972,318,0 chrII 391457 . C T 4025.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.5028;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.54;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4025,438,0 chrII 391835 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.5040;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.81;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4034,438,0 chrII 391895 . C T 4116.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.36;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4116,438,0 chrII 392090 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.60;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3481,369,0 chrII 392135 . G A 3867.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.02;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3867,411,0 chrII 392182 . T A 3720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=3.628;HaplotypeScore=11.1948;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.315;QD=22.41;ReadPosRankSum=1.711;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3720,393,0 chrII 392522 . G A 216.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=1.33;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:27:249,27,0 chrII 392785 . T G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.879;DP=156;Dels=0.00;FS=3.030;HaplotypeScore=9.6536;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.706;QD=20.72;ReadPosRankSum=1.419;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3265,338,0 chrII 392904 . A T 211.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.245;DP=142;Dels=0.00;FS=3.256;HaplotypeScore=57.4739;MLEAC=1;MLEAF=0.500;MQ=42.34;MQ0=0;MQRankSum=-5.003;QD=1.49;ReadPosRankSum=-3.630;SB=-4.210e+02 GT:AD:DP:GQ:PL 0/1:97,45:142:99:241,0,791 chrII 393191 . A T 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=20.2629;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.576;QD=23.10;ReadPosRankSum=-1.039;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3580,381,0 chrII 393269 . T C 3354.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.3538;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=20.96;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3354,360,0 chrII 393489 . C T 4189.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=24.07;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4189,442,0 chrII 393507 . G A 3850.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=21.88;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3850,403,0 chrII 393519 . A T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.1759;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=20.19;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3513,369,0 chrII 393698 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=19.61;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:3844,403,0 chrII 393708 . T C 3639.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=17.84;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3639,390,0 chrII 394376 . G A 5628.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=16.6304;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.65;SB=-3.022e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:5628,615,0 chrII 394415 . C A 5943.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.30;SB=-3.021e+03 GT:AD:DP:GQ:PL 1/1:0,277:279:99:5943,625,0 chrII 394430 . C T 6313.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=8.8448;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.62;SB=-3.393e+03 GT:AD:DP:GQ:PL 1/1:0,292:292:99:6313,690,0 chrII 394726 . G C 2369 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=14.02;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,168:169:99:2402,258,0 chrII 394873 . G A 555 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.00;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:63:588,63,0 chrII 395030 . A G 305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.085;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.519;QD=19.06;ReadPosRankSum=-1.085;SB=-9.500e+01 GT:AD:DP:GQ:PL 1/1:1,15:16:36:338,36,0 chrII 395115 . C T 521 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=24.81;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:60:554,60,0 chrII 395218 . G A 1147 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.67;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1180,129,0 chrII 395258 . C A 1545 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.92;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1578,171,0 chrII 395349 . G A 2072 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.77;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,87:91:99:2105,228,0 chrII 395756 . G A 4665.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4665,490,0 chrII 395853 . C T 4784.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.45;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4784,496,0 chrII 396484 . G C 4714.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=17.7490;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.41;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,224:231:99:4714,522,0 chrII 396556 . T C 6131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=262;Dels=0.00;FS=6.052;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.745;QD=23.40;ReadPosRankSum=2.965;SB=-3.132e+03 GT:AD:DP:GQ:PL 1/1:3,257:262:99:6131,678,0 chrII 396793 . T C 5000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=232;Dels=0.00;FS=3.029;HaplotypeScore=20.7406;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.338;QD=21.55;ReadPosRankSum=2.428;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:2,227:232:99:5000,549,0 chrII 396967 . A G 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-1.696;QD=20.91;ReadPosRankSum=1.679;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4057,435,0 chrII 396972 . C T 4039.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.15;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4039,447,0 chrII 397114 . G A 4421.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.5379;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.77;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4421,471,0 chrII 397162 . T C 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=173;Dels=0.00;FS=5.784;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.180;QD=23.46;ReadPosRankSum=2.925;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:4059,435,0 chrII 397435 . A G 5057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=198;Dels=0.00;FS=11.196;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.179;QD=25.54;ReadPosRankSum=1.658;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:3,194:198:99:5057,544,0 chrII 397645 . A G 4877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=216;Dels=0.00;FS=2.977;HaplotypeScore=10.0563;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.278;QD=22.58;ReadPosRankSum=2.415;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:4877,540,0 chrII 397813 . T C 3972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.120;DP=176;Dels=0.00;FS=14.687;HaplotypeScore=12.6367;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.624;QD=22.57;ReadPosRankSum=3.410;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:4,171:176:99:3972,429,0 chrII 397849 . C T 4366.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.2922;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.26;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4366,480,0 chrII 397984 . A G 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=166;Dels=0.00;FS=3.430;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.521;QD=24.31;ReadPosRankSum=1.711;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:4035,429,0 chrII 398292 . G A 2363 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.37;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2396,255,0 chrII 398314 . G A 2069 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.28;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2102,222,0 chrII 398387 . C G 1382 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1415,153,0 chrII 398429 . T G 1465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=5.956;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.370;QD=21.54;ReadPosRankSum=1.681;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1498,162,0 chrII 399535 . C T 3715.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=23.81;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3715,390,0 chrII 399796 . G A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.08;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3624,393,0 chrII 399991 . G A 4798.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.61;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4798,525,0 chrII 400386 . A G 3750.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.8775;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.73;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3750,399,0 chrII 400486 . A G 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=3.027;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-2.024;QD=24.18;ReadPosRankSum=2.418;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3797,405,0 chrII 400667 . G A 3712.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.96;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3712,411,0 chrII 400827 . T C 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.709;QD=22.90;ReadPosRankSum=1.642;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3504,387,0 chrII 400907 . C T 3218.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3251,339,0 chrII 401143 . A G 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.513;QD=22.46;ReadPosRankSum=1.668;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3638,402,0 chrII 401604 . C G 4218.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.4425;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.35;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:4218,468,0 chrII 401612 . T C 4446.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.4003;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.21;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4446,474,0 chrII 401915 . A G 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=142;Dels=0.00;FS=7.380;HaplotypeScore=7.3517;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.095;QD=24.33;ReadPosRankSum=2.415;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3455,369,0 chrII 402150 . T C 4533.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.01;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4533,492,0 chrII 402249 . T C 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.372;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.201;QD=22.78;ReadPosRankSum=1.570;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3440,378,0 chrII 403146 . C T 2775 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.0089;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.02;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2808,300,0 chrII 403244 . C T 4588.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.06;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4588,484,0 chrII 403354 . T C 4321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.444;QD=22.27;ReadPosRankSum=1.714;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:1,190:194:99:4321,474,0 chrII 403369 . T C 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=190;Dels=0.00;FS=2.985;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-0.627;QD=20.29;ReadPosRankSum=2.398;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3855,420,0 chrII 403621 . C G 3183 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.57;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3216,348,0 chrII 403763 . T C 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=3.043;HaplotypeScore=11.8844;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.346;QD=22.58;ReadPosRankSum=1.681;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3081,333,0 chrII 403944 . C T 2672 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.64;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2705,294,0 chrII 404067 . T C 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-1.401;QD=23.04;ReadPosRankSum=1.666;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3617,393,0 chrII 404090 . A G 2756 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.20;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2789,303,0 chrII 404101 . C T 2691 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.79;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2724,291,0 chrII 404406 . G A 3207 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.0425;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.24;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3240,348,0 chrII 404586 . C T 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=178;Dels=0.00;FS=3.237;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.362;QD=17.74;ReadPosRankSum=1.145;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3191,333,0 chrII 404589 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=16.83;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:2979,321,0 chrII 404662 . C T 5058.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.5506;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.42;SB=-2.881e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:5058,529,0 chrII 404844 . T C 4956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=215;Dels=0.00;FS=3.154;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=0.540;QD=23.05;ReadPosRankSum=1.700;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4956,534,0 chrII 405122 . C T 4546.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.96;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4546,501,0 chrII 405275 . G A 2944 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.30;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2977,312,0 chrII 405577 . T A 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=4.578;HaplotypeScore=3.1753;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.892;QD=21.83;ReadPosRankSum=1.548;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2936,318,0 chrII 405578 . A C 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.394;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7527;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=-0.535;QD=21.53;ReadPosRankSum=3.136;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:4,132:137:99:2983,327,0 chrII 405625 . G A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=24.33;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3309,354,0 chrII 405666 . C A 2625 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=21.69;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2658,294,0 chrII 405695 . A C 2206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=3.433;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;MQRankSum=-1.696;QD=22.74;ReadPosRankSum=1.696;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2239,240,0 chrII 405713 . T C 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.00;FS=3.010;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;MQRankSum=0.144;QD=21.07;ReadPosRankSum=1.660;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2077,222,0 chrII 405716 . A T 2009 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;QD=21.60;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2042,213,0 chrII 405749 . A G 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=3.757;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=41.45;MQ0=0;MQRankSum=-1.155;QD=19.34;ReadPosRankSum=1.671;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2238,255,0 chrII 405790 . A C 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=109;Dels=0.00;FS=6.643;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=41.30;MQ0=0;MQRankSum=0.192;QD=18.82;ReadPosRankSum=2.359;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2084,225,0 chrII 405803 . G A 1975 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.96;MQ0=0;QD=18.81;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2008,210,0 chrII 405845 . T A 1699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;MQRankSum=-1.371;QD=14.77;ReadPosRankSum=1.642;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1732,186,0 chrII 405851 . A T 1692 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.2880;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=14.10;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1725,180,0 chrII 406051 . C T 2731 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;QD=17.85;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2764,303,0 chrII 406057 . T C 2860 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.5165;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=18.82;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2893,309,0 chrII 406258 . C T 3384.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=26.03;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3384,360,0 chrII 406787 . T G 5266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=233;Dels=0.00;FS=7.199;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.796;QD=22.60;ReadPosRankSum=2.376;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:5266,588,0 chrII 407113 . T G 3077 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.2128;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.62;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3110,339,0 chrII 407146 . A G 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.074;QD=23.34;ReadPosRankSum=1.703;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2857,309,0 chrII 407450 . T C 2496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.127;QD=23.11;ReadPosRankSum=2.404;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2529,273,0 chrII 407559 . T C 1778 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=96.3303;MLEAC=2;MLEAF=1.00;MQ=30.86;MQ0=0;QD=14.94;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:1811,207,0 chrII 407570 . C T 1567 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.54;MQ0=0;QD=12.64;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1600,174,0 chrII 407571 . A G 1581 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.54;MQ0=0;QD=12.75;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1614,174,0 chrII 407645 . G A 3617.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.92;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3617,384,0 chrII 407830 . G A 2548 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.75;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2581,279,0 chrII 407831 . A T 2484 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=2.631;HaplotypeScore=5.1064;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=1.607;QD=22.38;ReadPosRankSum=2.339;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2517,279,0 chrII 407836 . A G 2563 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.7381;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.147;QD=23.51;ReadPosRankSum=1.118;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2596,279,0 chrII 408073 . G A 2190 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=15.4924;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.55;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2223,237,0 chrII 408107 . A G 2667 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8425;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.60;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2700,288,0 chrII 408433 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=151;Dels=0.00;FS=2.793;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.287;QD=22.87;ReadPosRankSum=2.368;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3453,372,0 chrII 408580 . G A 3998.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.9765;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=23.52;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3998,418,0 chrII 408643 . C T 3064 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.2199;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=18.91;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3097,345,0 chrII 408644 . T G 3041 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.100;DP=163;Dels=0.00;FS=5.610;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=-1.292;QD=18.66;ReadPosRankSum=2.907;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:3,159:163:99:3074,336,0 chrII 408652 . G C 3041 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=18.77;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3074,324,0 chrII 408801 . T C 3634.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.8699;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.23;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3634,384,0 chrII 408838 . A G 3604.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.6485;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.40;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3604,381,0 chrII 408987 . C T 2540 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=14.9133;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.71;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2573,273,0 chrII 409116 . A C 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.885;QD=21.89;ReadPosRankSum=1.578;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2003,216,0 chrII 409149 . A G 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=4.726;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.295;QD=23.55;ReadPosRankSum=1.696;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2294,246,0 chrII 409264 . G A 3388.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=14.3349;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3388,369,0 chrII 409364 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=178;Dels=0.00;FS=9.543;HaplotypeScore=11.9448;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.705;QD=21.05;ReadPosRankSum=2.394;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:3747,426,0 chrII 409999 . T C 4534.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.9156;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.25;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4534,489,0 chrII 410209 . G T 4216.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.0279;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.51;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4216,453,0 chrII 410546 . T C 5162.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.6097;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5162,555,0 chrII 410961 . G A 3775.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.9269;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.46;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3775,399,0 chrII 410985 . A G 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.683;DP=213;Dels=0.00;FS=9.599;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=-0.474;QD=13.37;ReadPosRankSum=2.967;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:3,210:213:99:2880,327,0 chrII 410998 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=11.78;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:2354,255,0 chrII 411003 . C T 2487 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.3514;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=12.75;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:2520,267,0 chrII 411152 . T A 4824.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.53;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4824,514,0 chrII 412233 . A C 3650.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.10;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3650,405,0 chrII 412403 . T C 3470.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.27;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3470,378,0 chrII 412642 . A G 4819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=3.740;HaplotypeScore=11.8697;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.571;QD=24.71;ReadPosRankSum=1.661;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4819,520,0 chrII 413099 . A G 5309.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=13.1529;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=19.81;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:5309,582,0 chrII 413111 . G A 4825.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=4.4343;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=19.00;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,250:254:99:4825,505,0 chrII 413117 . T A 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=247;Dels=0.00;FS=8.146;HaplotypeScore=8.2242;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-0.790;QD=18.52;ReadPosRankSum=2.390;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:4574,501,0 chrII 413148 . A T 5069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=243;Dels=0.00;FS=3.007;HaplotypeScore=18.3210;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.904;QD=20.86;ReadPosRankSum=2.379;SB=-3.151e+03 GT:AD:DP:GQ:PL 1/1:2,241:243:99:5069,552,0 chrII 413264 . C A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.5786;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.74;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4065,441,0 chrII 413270 . C T 4196.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.4356;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.74;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4196,444,0 chrII 413321 . C A 4368.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.9847;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.32;SB=-2.783e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4368,471,0 chrII 413777 . A G 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=184;Dels=0.00;FS=3.032;HaplotypeScore=14.3277;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.331;QD=21.57;ReadPosRankSum=2.422;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:2,179:184:99:3968,447,0 chrII 414756 . G A 4175.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.7663;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.19;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4175,456,0 chrII 414849 . C T 3308.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.30;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3308,360,0 chrII 414987 . C G 3010 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=17.2983;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.80;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3043,327,0 chrII 415314 . T A 4618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.253;DP=194;Dels=0.00;FS=8.146;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=1.291;QD=23.80;ReadPosRankSum=3.307;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:4,190:194:99:4618,484,0 chrII 415534 . G A 4177.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=23.21;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4177,442,0 chrII 415547 . T C 3545.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.6598;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=20.98;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3545,399,0 chrII 415575 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.5021;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=21.52;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3529,375,0 chrII 415599 . C A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=19.13;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3290,351,0 chrII 415607 . T C 3097 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=19.73;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3130,336,0 chrII 415620 . C A 2722 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=18.27;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2755,297,0 chrII 415846 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=24.78;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3056,327,0 chrII 415863 . G C 3163 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.97;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3196,360,0 chrII 415869 . A C 3079 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.99;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3112,339,0 chrII 415997 . T C 3053 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.1677;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.62;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3086,336,0 chrII 416243 . T C 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=3.310;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.524;QD=22.43;ReadPosRankSum=1.714;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4374,471,0 chrII 416328 . T C 4464.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.66;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4464,474,0 chrII 416426 . A C 4539.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4539,498,0 chrII 416935 . C A 1747 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.99;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1780,192,0 chrII 417239 . A G 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=121;Dels=0.00;FS=3.752;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.272;QD=19.24;ReadPosRankSum=1.703;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2361,255,0 chrII 417346 . G A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.19;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3846,423,0 chrII 417468 . T C 2097 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=23.30;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2130,225,0 chrII 417503 . A G 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-1.039;QD=23.78;ReadPosRankSum=1.699;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2530,270,0 chrII 417531 . A T 2183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.234;QD=21.83;ReadPosRankSum=2.351;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2216,234,0 chrII 417692 . T C 688 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=22.19;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:721,75,0 chrII 417694 . T C 675 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=21.77;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:708,75,0 chrII 417699 . G A 598 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=19.93;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,28:30:63:631,63,0 chrII 417762 . A C 1039 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=0;QD=25.34;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1072,114,0 chrII 417795 . A G 945 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=23.05;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:978,108,0 chrII 417797 . T C 1041 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;QD=24.21;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1074,111,0 chrII 417889 . G A 1224 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.47;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1257,138,0 chrII 417917 . G C 964 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=20.08;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:997,102,0 chrII 417944 . T A 712 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;QD=16.95;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:745,81,0 chrII 417950 . C T 666 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.91;MQ0=0;QD=16.24;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:78:699,78,0 chrII 417952 . T G 647 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.94;MQ0=0;QD=17.03;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:75:680,75,0 chrII 417959 . C T 594 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=16.50;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:69:627,69,0 chrII 417968 . T C 631 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=18.03;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:72:664,72,0 chrII 417969 . T A 632 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=18.06;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:72:665,72,0 chrII 417980 . T C 660 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=16.50;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:693,75,0 chrII 418007 . G A 627 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.31;MQ0=0;QD=13.63;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:69:660,69,0 chrII 418023 . C T 658 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;QD=12.42;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:78:691,78,0 chrII 418042 . G C 912 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;QD=13.61;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:945,102,0 chrII 418045 . T C 935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=3.051;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.23;MQ0=0;MQRankSum=-1.303;QD=13.17;ReadPosRankSum=2.381;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:968,105,0 chrII 418065 . G A 1295 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.19;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1328,141,0 chrII 418148 . A C 1764 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=22.91;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1797,192,0 chrII 418150 . C T 1750 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;QD=21.87;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1783,192,0 chrII 418183 . A T 2115 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=37.99;MQ0=0;QD=21.58;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2148,225,0 chrII 418255 . G A 3574.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=25.71;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3574,367,0 chrII 418288 . T C 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;MQRankSum=-0.012;QD=23.94;ReadPosRankSum=1.708;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3376,357,0 chrII 418348 . T C 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=125;Dels=0.00;FS=6.105;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=0.379;QD=22.35;ReadPosRankSum=2.944;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2827,303,0 chrII 418383 . C A 2622 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=21.49;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2655,282,0 chrII 418399 . A T 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.30;MQ0=0;MQRankSum=-1.703;QD=20.32;ReadPosRankSum=1.703;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2471,273,0 chrII 418404 . T G 2309 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.99;MQ0=0;QD=20.08;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2342,255,0 chrII 418420 . C T 2081 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=41.08;MQ0=0;QD=20.20;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2114,219,0 chrII 418450 . A G 1907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;MQRankSum=-0.328;QD=20.29;ReadPosRankSum=2.345;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1940,207,0 chrII 418451 . C T 1977 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;QD=21.49;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2010,207,0 chrII 418484 . T C 2035 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=20.15;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2068,219,0 chrII 418505 . T A 1956 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=20.16;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1989,216,0 chrII 418524 . G A 2158 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.75;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2191,231,0 chrII 418557 . A G 1622 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.53;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1655,180,0 chrII 419086 . G A 4484.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.24;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4484,472,0 chrII 419139 . C T 3081 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.65;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3114,327,0 chrII 419197 . A G 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.278;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-0.439;QD=20.09;ReadPosRankSum=1.655;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2725,306,0 chrII 419204 . G A 2783 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.60;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2816,306,0 chrII 419221 . A G 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=3.492;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.351;QD=19.83;ReadPosRankSum=1.708;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2868,309,0 chrII 419913 . C G 2153 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.75;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2186,237,0 chrII 419937 . C T 2377 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.86;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2410,255,0 chrII 420402 . A G 1716 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=9.13;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:1749,189,0 chrII 420411 . C T 2566 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=12.46;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:2599,276,0 chrII 420567 . G T 5627.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=20.1363;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=22.60;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:0,245:249:99:5627,615,0 chrII 420692 . G A 6509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.860;QD=22.52;ReadPosRankSum=1.599;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:1,285:289:99:6509,679,0 chrII 420720 . G A 5768.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=19.9383;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.90;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:5768,636,0 chrII 420843 . C T 5462.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.38;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5462,586,0 chrII 421082 . A G 4707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=205;Dels=0.00;FS=2.573;HaplotypeScore=18.2133;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.192;QD=22.96;ReadPosRankSum=2.936;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:3,201:205:99:4707,502,0 chrII 421116 . C A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.28;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3833,406,0 chrII 421574 . G A 3684.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.2324;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.03;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3684,390,0 chrII 421673 . T C 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=0.267;QD=23.72;ReadPosRankSum=1.673;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4151,438,0 chrII 421692 . A G 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=157;Dels=0.00;FS=10.257;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=-0.455;QD=19.25;ReadPosRankSum=2.776;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3056,324,0 chrII 421695 . C G 2953 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=19.95;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2986,321,0 chrII 422076 . C G 3333.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.9208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.33;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3333,357,0 chrII 422148 . T C 2414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=126;Dels=0.02;FS=2.879;HaplotypeScore=7.5436;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-2.309;QD=19.16;ReadPosRankSum=2.329;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:2,120:124:99:2447,264,0 chrII 422164 . T C 2770 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.98;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2803,300,0 chrII 422415 . C T 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.884;DP=148;Dels=0.00;FS=3.040;HaplotypeScore=11.6851;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.318;QD=24.43;ReadPosRankSum=-1.638;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3615,367,0 chrII 422475 . T A 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8581;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.732;QD=22.77;ReadPosRankSum=1.703;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2697,285,0 chrII 422583 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.63;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3300,348,0 chrII 422622 . A G 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-1.164;QD=20.39;ReadPosRankSum=1.675;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2541,282,0 chrII 422634 . G A 2395 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.3663;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.16;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2428,261,0 chrII 422762 . T G 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=131;Dels=0.00;FS=3.027;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.258;QD=22.70;ReadPosRankSum=2.336;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:3007,324,0 chrII 422913 . G A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.03;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3749,391,0 chrII 423054 . C T 3712.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.75;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3712,402,0 chrII 423264 . A G 1880 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.38;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1913,207,0 chrII 423351 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.41;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1870,204,0 chrII 423506 . A G 1979 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=21.99;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2012,216,0 chrII 423518 . A G 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=3.664;HaplotypeScore=5.9208;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=0.615;QD=21.39;ReadPosRankSum=1.695;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2044,225,0 chrII 423550 . G A 2155 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.13;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2188,234,0 chrII 423698 . G T 2832 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.02;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2865,309,0 chrII 423800 . C T 3634.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.2044;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.00;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3634,387,0 chrII 423950 . A G 4593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=4.098;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=1.283;QD=24.69;ReadPosRankSum=1.695;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4593,492,0 chrII 424031 . C T 4351.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.4082;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.31;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4351,454,0 chrII 424193 . G A 5211.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=5.0153;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=22.36;SB=-3.106e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5211,559,0 chrII 424199 . G A 4984.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.55;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4984,529,0 chrII 424346 . C T 4838.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=8.9573;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.22;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:4838,514,0 chrII 424367 . C T 4326.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.00;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4326,462,0 chrII 424421 . A G 4303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.3830;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-0.619;QD=21.95;ReadPosRankSum=1.679;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4303,471,0 chrII 424448 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.6616;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=22.35;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3978,432,0 chrII 424451 . C T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=22.13;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4005,426,0 chrII 424490 . G A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.63;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3631,399,0 chrII 424607 . A G 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.548;QD=22.25;ReadPosRankSum=-0.745;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3516,372,0 chrII 424811 . T C 2188 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.53;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2221,240,0 chrII 424906 . G A 501 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=8.8102;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=13.54;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:57:534,57,0 chrII 426865 . C T 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.564;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.1226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.282;QD=22.54;ReadPosRankSum=0.322;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3877,408,0 chrII 426936 . G C 4049.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.1253;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.31;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4049,429,0 chrII 427377 . A G 4239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=210;Dels=0.00;FS=2.822;HaplotypeScore=12.6511;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=2.249;QD=20.19;ReadPosRankSum=2.320;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:2,206:210:99:4239,456,0 chrII 427525 . T A 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=12.389;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.366;QD=21.54;ReadPosRankSum=1.699;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2273,243,0 chrII 427545 . A G 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.935;QD=18.99;ReadPosRankSum=2.899;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2103,231,0 chrII 427719 . G A 2759 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.9714;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.07;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2792,306,0 chrII 427812 . A G 2413 filter AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.1500;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=18;QD=16.19;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2446,276,0 chrII 427872 . G A 3091 filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.0758;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=13;QD=19.56;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3124,339,0 chrII 427998 . G A 5332.01 filter AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=13.7085;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=13;QD=18.71;SB=-3.045e+03 GT:AD:DP:GQ:PL 1/1:1,284:285:99:5332,568,0 chrII 428040 . T C 2506 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=239;Dels=0.00;FS=1.431;HaplotypeScore=13.4398;MLEAC=2;MLEAF=1.00;MQ=38.47;MQ0=11;MQRankSum=2.435;QD=10.49;ReadPosRankSum=1.236;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:18,221:239:99:2539,174,0 chrII 428055 . A T 2295 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.549;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=7;MQRankSum=-1.854;QD=9.44;ReadPosRankSum=2.867;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:12,231:243:99:2328,156,0 chrII 428058 . A G 1901 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.249;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=5.1694;MLEAC=2;MLEAF=1.00;MQ=36.56;MQ0=6;MQRankSum=-1.577;QD=8.23;ReadPosRankSum=3.552;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:11,219:231:99:1934,174,0 chrII 428059 . G A 2042 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.080;DP=230;Dels=0.00;FS=6.277;HaplotypeScore=3.5921;MLEAC=2;MLEAF=1.00;MQ=36.42;MQ0=6;MQRankSum=-0.411;QD=8.88;ReadPosRankSum=2.121;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:7,223:230:99:2075,176,0 chrII 428060 . C T 2014 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.449;DP=232;Dels=0.00;FS=6.078;HaplotypeScore=1.9367;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=5;MQRankSum=0.341;QD=8.68;ReadPosRankSum=2.168;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:5,225:232:99:2047,175,0 chrII 428064 . G T 2522 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.220;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=4.7086;MLEAC=2;MLEAF=1.00;MQ=38.65;MQ0=1;MQRankSum=-0.276;QD=9.52;ReadPosRankSum=1.627;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:2,263:265:99:2555,253,0 chrII 428433 . G A 7591.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=23.5631;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.29;SB=-3.451e+03 GT:AD:DP:GQ:PL 1/1:0,326:326:99:7591,820,0 chrII 428478 . A G 6673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=330;Dels=0.00;FS=3.050;HaplotypeScore=5.5888;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.963;QD=20.22;ReadPosRankSum=1.669;SB=-4.382e+03 GT:AD:DP:GQ:PL 1/1:1,328:330:99:6673,712,0 chrII 428484 . T G 6214.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.48;SB=-4.190e+03 GT:AD:DP:GQ:PL 1/1:0,318:319:99:6214,678,0 chrII 428694 . C T 8514.01 filter AC=2;AF=1.00;AN=2;DP=370;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.01;SB=-4.145e+03 GT:AD:DP:GQ:PL 1/1:0,368:370:99:8514,931,0 chrII 428751 . G A 6899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.608;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=19.1095;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=1.698;QD=22.62;ReadPosRankSum=-1.606;SB=-3.293e+03 GT:AD:DP:GQ:PL 1/1:1,301:305:99:6899,724,0 chrII 428805 . T G 6081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=269;Dels=0.00;FS=3.109;HaplotypeScore=15.1118;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=-0.026;QD=22.61;ReadPosRankSum=1.719;SB=-3.460e+03 GT:AD:DP:GQ:PL 1/1:1,267:269:99:6081,649,0 chrII 428862 . T A 6189.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.87;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:0,283:283:99:6189,678,0 chrII 428886 . A G 6142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.624;QD=20.89;ReadPosRankSum=1.650;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:1,293:294:99:6142,684,0 chrII 428982 . G A 4736.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.2698;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.63;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4736,502,0 chrII 429095 . T C 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=133;Dels=0.00;FS=7.951;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=-1.283;QD=19.29;ReadPosRankSum=1.626;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2599,285,0 chrII 429123 . T G 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=108;Dels=0.00;FS=6.451;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;MQRankSum=-0.425;QD=18.12;ReadPosRankSum=1.699;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,105:108:99:1990,216,0 chrII 429124 . C A 1965 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=18.19;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:1998,210,0 chrII 429183 . T A 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=109;Dels=0.00;FS=5.750;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.969;QD=17.94;ReadPosRankSum=1.669;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1989,213,0 chrII 429199 . G A 1935 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=19.16;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1968,216,0 chrII 429360 . G A 1787 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=24.82;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1820,195,0 chrII 429746 . A G 5398.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=22.87;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5398,603,0 chrII 429839 . T C 304 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=192;Dels=0.01;FS=4.003;HaplotypeScore=6.8933;MLEAC=2;MLEAF=1.00;MQ=13.84;MQ0=9;MQRankSum=-1.732;QD=1.58;ReadPosRankSum=1.694;SB=-7.338e-03 GT:AD:DP:GQ:PL 1/1:1,189:191:39:337,39,0 chrII 429840 . C T 312 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=196;Dels=0.00;FS=3.921;HaplotypeScore=7.5584;MLEAC=2;MLEAF=1.00;MQ=14.43;MQ0=9;MQRankSum=-1.339;QD=1.59;ReadPosRankSum=-0.028;SB=-7.578e-03 GT:AD:DP:GQ:PL 1/1:1,193:196:39:345,39,0 chrII 429842 . G A 357 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.3470;MLEAC=2;MLEAF=1.00;MQ=16.98;MQ0=9;QD=1.78;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,197:200:42:390,42,0 chrII 430040 . G A 3786.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=9.1101;MLEAC=2;MLEAF=1.00;MQ=47.13;MQ0=0;QD=15.08;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,251:251:99:3786,417,0 chrII 430055 . C T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=14.22;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,235:235:99:3342,351,0 chrII 430067 . A G 3478.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=13.17;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,263:264:99:3478,372,0 chrII 430145 . A G 8622.01 filter AC=2;AF=1.00;AN=2;DP=370;Dels=0.00;FS=0.000;HaplotypeScore=19.2764;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.30;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:0,368:370:99:8622,937,0 chrII 430301 . A G 10483.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.689;DP=443;Dels=0.00;FS=18.482;HaplotypeScore=29.4209;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=1.804;QD=23.66;ReadPosRankSum=3.788;SB=-4.843e+03 GT:AD:DP:GQ:PL 1/1:5,435:443:99:10483,1117,0 chrII 430846 . C A 5437.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=18.6152;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.24;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5437,586,0 chrII 431057 . T C 4688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=225;Dels=0.00;FS=2.816;HaplotypeScore=16.6307;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.073;QD=20.84;ReadPosRankSum=2.382;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:2,219:225:99:4688,513,0 chrII 431229 . A G 4193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.2386;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.378;QD=20.97;ReadPosRankSum=2.425;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:2,196:200:99:4193,465,0 chrII 431273 . T C 4471.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=19.9194;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.70;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4471,477,0 chrII 431479 . A G 4918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=198;Dels=0.00;FS=5.702;HaplotypeScore=11.3762;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.064;QD=24.84;ReadPosRankSum=1.679;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4918,531,0 chrII 431521 . A G 5216.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.39;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5216,582,0 chrII 431663 . G A 4864.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=15.4717;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.62;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4864,514,0 chrII 431703 . C T 4956.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.4304;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.05;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4956,523,0 chrII 431761 . A T 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.8746;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.688;QD=22.29;ReadPosRankSum=1.710;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3477,381,0 chrII 431781 . A G 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.354;DP=142;Dels=0.00;FS=17.847;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.179;QD=22.42;ReadPosRankSum=3.505;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:7,135:142:99:3217,328,0 chrII 431851 . C G 2761 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.5912;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.24;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2794,303,0 chrII 431912 . A T 2743 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.48;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2776,297,0 chrII 431999 . C T 2365 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.90;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2398,258,0 chrII 432022 . A T 2074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=108;Dels=0.04;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=1.632;QD=19.20;ReadPosRankSum=1.699;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2107,222,0 chrII 432025 . T C 2198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=3.345;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-0.577;QD=20.35;ReadPosRankSum=1.700;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2231,237,0 chrII 432185 . G A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.02;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3327,354,0 chrII 432284 . T C 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.443;QD=21.81;ReadPosRankSum=1.674;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,179:184:99:4013,441,0 chrII 432329 . T C 4608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.2339;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.970;QD=23.04;ReadPosRankSum=1.611;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4608,498,0 chrII 432356 . A G 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=184;Dels=0.00;FS=4.075;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.431;QD=22.55;ReadPosRankSum=1.694;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4149,453,0 chrII 432415 . C A 4104.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.4238;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.55;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4104,438,0 chrII 432497 . C T 4212.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.4905;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.02;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,179:183:99:4212,456,0 chrII 432974 . G C 4712.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.3976;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.65;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4712,513,0 chrII 433187 . C T 2554 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.21;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2587,279,0 chrII 433196 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.98;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2583,279,0 chrII 433232 . C A 2809 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.29;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2842,306,0 chrII 433640 . C T 5088.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=19.6309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:5088,552,0 chrII 434976 . G T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.3207;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.80;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,178:182:99:3967,423,0 chrII 435201 . C T 3977.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.7891;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.70;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3977,432,0 chrII 435236 . C T 4296.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.87;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4296,462,0 chrII 435261 . C T 4530.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.23;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4530,472,0 chrII 435391 . G C 4488.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.1656;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.78;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:4488,480,0 chrII 435637 . T C 4748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.120;QD=23.86;ReadPosRankSum=1.715;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4748,507,0 chrII 435843 . G A 3012 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.9032;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3045,321,0 chrII 436119 . T C 2319 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2352,258,0 chrII 437154 . T C 3639.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=16.4335;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.05;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3639,393,0 chrII 437187 . G A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.36;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3376,366,0 chrII 437295 . G A 2886 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.07;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2919,321,0 chrII 437307 . A G 2916 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5806;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.98;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2949,321,0 chrII 437440 . A T 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.506;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.386;QD=23.83;ReadPosRankSum=1.682;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3312,351,0 chrII 437754 . C T 3225.28 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3258,354,0 chrII 438061 . G A 2166 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.33;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2199,243,0 chrII 438126 . A C 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=121;Dels=0.00;FS=3.121;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.237;QD=21.75;ReadPosRankSum=1.703;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2665,291,0 chrII 438190 . A G 2618 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2651,285,0 chrII 438300 . A C 3051 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3084,342,0 chrII 438523 . A G 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=188;Dels=0.00;FS=3.528;HaplotypeScore=14.2223;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.602;QD=23.95;ReadPosRankSum=1.695;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4503,486,0 chrII 438582 . T C 4222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=189;Dels=0.00;FS=3.019;HaplotypeScore=12.9825;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.768;QD=22.34;ReadPosRankSum=2.423;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4222,453,0 chrII 438864 . C T 2265 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.04;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2298,243,0 chrII 438870 . T C 2019 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=18.19;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2052,219,0 chrII 438919 . C G 1538 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.3342;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.53;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1571,171,0 chrII 438954 . T G 2201 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.16;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2234,246,0 chrII 439191 . A G 1603 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1636,174,0 chrII 439486 . T C 2880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=125;Dels=0.00;FS=2.675;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.151;QD=23.04;ReadPosRankSum=2.332;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2913,312,0 chrII 440046 . C A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.72;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3582,375,0 chrII 440220 . A T 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.758;QD=22.58;ReadPosRankSum=1.713;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4199,453,0 chrII 440349 . G A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3401,360,0 chrII 441419 . A C 4206.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.7032;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.98;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4206,459,0 chrII 441722 . G A 5694.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=9.6910;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.43;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5694,621,0 chrII 441772 . T C 6127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=272;Dels=0.00;FS=3.916;HaplotypeScore=13.3451;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.543;QD=22.53;ReadPosRankSum=1.694;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:1,270:272:99:6127,664,0 chrII 441927 . A G 4840.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.94;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4840,537,0 chrII 442031 . G C 3871.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.2645;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=21.75;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3871,432,0 chrII 442040 . A G 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.351;DP=177;Dels=0.00;FS=13.114;HaplotypeScore=3.9445;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-0.607;QD=20.95;ReadPosRankSum=3.193;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:4,173:177:99:3708,402,0 chrII 442059 . G C 3604.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=19.59;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3604,384,0 chrII 442063 . T C 3552.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=19.10;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3552,381,0 chrII 442233 . C A 4716.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.3453;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=24.31;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4716,501,0 chrII 442249 . G A 4717.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.8456;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=24.19;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4717,501,0 chrII 442309 . A G 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=171;Dels=0.00;FS=2.987;HaplotypeScore=13.1791;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=1.395;QD=22.05;ReadPosRankSum=2.406;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3770,411,0 chrII 442819 . G A 3134 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.56;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3167,333,0 chrII 447158 . G A 3792.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3792,405,0 chrII 447264 . T C 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.340;QD=23.27;ReadPosRankSum=1.710;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3700,411,0 chrII 447300 . C T 3084 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.19;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3117,333,0 chrII 447536 . G T 4172.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.6607;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.54;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4172,450,0 chrII 447579 . A G 4732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=196;Dels=0.00;FS=3.265;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.673;QD=24.14;ReadPosRankSum=1.714;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:1,192:196:99:4732,507,0 chrII 447685 . T C 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=0.780;QD=23.14;ReadPosRankSum=1.694;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4234,456,0 chrII 447707 . A G 3728.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.4108;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=20.60;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3728,402,0 chrII 447726 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=18.20;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3313,360,0 chrII 447741 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.3041;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=18.65;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3450,378,0 chrII 447876 . G A 4433.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.96;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4433,469,0 chrII 448135 . G A 2906 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2939,324,0 chrII 448470 . G A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.8076;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.16;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3749,414,0 chrII 448507 . G T 4170.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4170,444,0 chrII 448634 . T C 4073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=171;Dels=0.00;FS=2.726;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.265;QD=23.82;ReadPosRankSum=2.421;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:4073,441,0 chrII 449152 . T A 5120.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.7786;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.26;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5120,558,0 chrII 449253 . C T 5461.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=17.4194;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.54;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:5461,577,0 chrII 449416 . T C 2381 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.70;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2414,258,0 chrII 449588 . G A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.1244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3276,357,0 chrII 450377 . T C 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DP=160;Dels=0.00;FS=5.877;HaplotypeScore=18.8705;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.411;QD=21.21;ReadPosRankSum=1.791;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:3,156:160:99:3393,372,0 chrII 450938 . T C 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.7766;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.732;QD=21.33;ReadPosRankSum=1.664;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,100:103:99:2230,243,0 chrII 451124 . G A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.7696;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=23.02;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3683,385,0 chrII 451203 . T C 3788.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.55;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3788,417,0 chrII 451343 . G A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.90;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3257,354,0 chrII 451344 . A T 3224.03 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.66;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3257,354,0 chrII 451373 . G A 4255.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.8173;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.17;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4255,448,0 chrII 451442 . G A 4733.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.55;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4733,496,0 chrII 451454 . G T 4251.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.49;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4251,462,0 chrII 451540 . C T 4951.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=25.13;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4951,520,0 chrII 451599 . C T 5866.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=12.8084;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=24.24;SB=-3.056e+03 GT:AD:DP:GQ:PL 1/1:0,239:242:99:5866,633,0 chrII 452218 . A G 2323 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=13.3483;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.74;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2356,258,0 chrII 452365 . T C 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.666;QD=22.51;ReadPosRankSum=1.703;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2667,288,0 chrII 452408 . C T 1394 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0093;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=16.02;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1427,153,0 chrII 452891 . G A 6004.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.7124;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.71;SB=-3.246e+03 GT:AD:DP:GQ:PL 1/1:0,239:243:99:6004,625,0 chrII 453044 . C T 5263.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.84;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5263,565,0 chrII 453048 . T C 4853.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.38;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:4853,525,0 chrII 453192 . A C 674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=90;Dels=0.00;FS=3.979;HaplotypeScore=11.5312;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-1.733;QD=7.49;ReadPosRankSum=1.559;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:1,41:90:78:707,78,0 chrII 453417 . G A 2134 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=15.6811;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.71;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:2167,222,0 chrII 453556 . A T 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=3.144;HaplotypeScore=4.8283;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.123;QD=21.04;ReadPosRankSum=1.690;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3471,372,0 chrII 453581 . G A 3065 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.4127;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.71;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3098,342,0 chrII 453718 . G A 4633.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=20.9925;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=24.01;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4633,481,0 chrII 454021 . A G 4323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.224;QD=20.59;ReadPosRankSum=1.715;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4323,477,0 chrII 454027 . T C 4331.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=20.53;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4331,468,0 chrII 454122 . T C 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.683;DP=205;Dels=0.00;FS=7.969;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-1.500;QD=19.88;ReadPosRankSum=3.774;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:5,200:205:99:4076,450,0 chrII 454135 . T C 4178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.148;QD=19.71;ReadPosRankSum=1.699;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4178,456,0 chrII 454261 . G A 4607.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=20.85;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4607,493,0 chrII 454272 . A G 4350.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.33;SB=-2.743e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4350,468,0 chrII 454336 . T C 4919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=222;Dels=0.00;FS=6.693;HaplotypeScore=7.4434;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-1.421;QD=22.16;ReadPosRankSum=2.405;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:4919,534,0 chrII 454371 . T A 5305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=225;Dels=0.00;FS=3.654;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=0.762;QD=23.58;ReadPosRankSum=1.717;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5305,568,0 chrII 454467 . T G 4556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=205;Dels=0.00;FS=7.345;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.842;QD=22.22;ReadPosRankSum=2.340;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:2,200:205:99:4556,489,0 chrII 454488 . A G 4711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=209;Dels=0.00;FS=2.910;HaplotypeScore=4.8580;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.076;QD=22.54;ReadPosRankSum=2.391;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4711,507,0 chrII 454587 . A G 2885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=2.905;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=-1.369;QD=20.46;ReadPosRankSum=2.345;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2918,315,0 chrII 454598 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=19.06;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2473,255,0 chrII 454753 . T C 4247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=185;Dels=0.00;FS=2.681;HaplotypeScore=16.6028;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-1.872;QD=22.96;ReadPosRankSum=2.409;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:4247,462,0 chrII 454884 . T C 4411.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=24.64;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4411,486,0 chrII 455010 . T A 5971.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.98;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5971,628,0 chrII 455029 . T C 5311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=225;Dels=0.00;FS=4.150;HaplotypeScore=11.4324;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=1.654;QD=23.60;ReadPosRankSum=1.685;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:1,220:225:99:5311,579,0 chrII 455204 . C T 6797.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.45;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:6797,727,0 chrII 455407 . A T 7323.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=27.1482;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.35;SB=-3.871e+03 GT:AD:DP:GQ:PL 1/1:0,343:343:99:7323,793,0 chrII 455916 . C T 6798.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=15.9540;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.72;SB=-3.720e+03 GT:AD:DP:GQ:PL 1/1:0,313:313:99:6798,739,0 chrII 455991 . A G 5675.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.748;DP=362;Dels=0.00;FS=11.970;HaplotypeScore=31.6483;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.299;QD=15.68;ReadPosRankSum=3.769;SB=-4.134e+03 GT:AD:DP:GQ:PL 1/1:5,356:362:99:5675,642,0 chrII 456055 . G A 7383.01 PASS AC=2;AF=1.00;AN=2;DP=355;Dels=0.00;FS=0.000;HaplotypeScore=16.8281;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.80;SB=-4.567e+03 GT:AD:DP:GQ:PL 1/1:0,354:355:99:7383,813,0 chrII 456132 . T G 6530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=324;Dels=0.00;FS=3.306;HaplotypeScore=18.9516;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.136;QD=20.15;ReadPosRankSum=1.678;SB=-3.817e+03 GT:AD:DP:GQ:PL 1/1:1,318:324:99:6530,726,0 chrII 456187 . G C 6614.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=14.3451;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=21.76;SB=-3.447e+03 GT:AD:DP:GQ:PL 1/1:0,298:304:99:6614,715,0 chrII 456231 . A G 5545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.318;DP=307;Dels=0.00;FS=7.949;HaplotypeScore=13.3867;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-0.896;QD=18.06;ReadPosRankSum=3.381;SB=-3.014e+03 GT:AD:DP:GQ:PL 1/1:4,301:307:99:5545,630,0 chrII 456240 . G A 5525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.652;QD=17.88;ReadPosRankSum=-1.102;SB=-3.318e+03 GT:AD:DP:GQ:PL 1/1:1,307:309:99:5525,600,0 chrII 456336 . G T 7277.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=27.8064;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.32;SB=-3.989e+03 GT:AD:DP:GQ:PL 1/1:0,312:312:99:7277,778,0 chrII 456431 . C G 5750.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=21.78;SB=-3.537e+03 GT:AD:DP:GQ:PL 1/1:0,262:264:99:5750,613,0 chrII 456442 . C T 5181.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=21.23;SB=-3.207e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5181,547,0 chrII 456535 . C T 4897.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.93;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4897,517,0 chrII 456657 . G T 4931.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=20.63;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:4931,537,0 chrII 456662 . G A 4585.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=20.65;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4585,481,0 chrII 456718 . G C 2737 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=0;QD=14.04;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:2770,300,0 chrII 456733 . C T 725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.556;DP=193;Dels=0.00;FS=11.326;HaplotypeScore=237.9314;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;MQRankSum=-4.040;QD=3.76;ReadPosRankSum=-10.168;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:117,74:193:81:758,81,0 chrII 456771 . G A 3592.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.8328;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=18.23;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3592,387,0 chrII 457002 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.7451;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=20.78;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3575,387,0 chrII 457014 . G A 3601.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.9430;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.76;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3601,390,0 chrII 457048 . A G 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=173;Dels=0.00;FS=2.867;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.993;QD=17.16;ReadPosRankSum=2.392;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3002,336,0 chrII 457101 . A G 2154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=103;Dels=0.00;FS=3.019;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.036;QD=20.91;ReadPosRankSum=2.378;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2187,249,0 chrII 457215 . G A 2884 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.71;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2917,306,0 chrII 457395 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6061;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3048,318,0 chrII 457684 . T A 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.211;QD=23.47;ReadPosRankSum=1.709;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3591,375,0 chrII 457818 . C T 4486.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4486,477,0 chrII 458104 . G A 4016.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.5902;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4016,423,0 chrII 458570 . T C 4291.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.7565;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=25.69;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4291,459,0 chrII 458604 . A C 4335.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.0082;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.69;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,179:183:99:4335,468,0 chrII 458640 . G C 4141.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.88;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4141,447,0 chrII 458748 . T C 4066.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.37;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4066,435,0 chrII 458800 . C T 4318.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.8933;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.86;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4318,471,0 chrII 458813 . G C 4179.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.5016;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.00;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4179,450,0 chrII 458841 . G A 4365.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.16;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4365,457,0 chrII 458919 . C T 5114.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.1847;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.07;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:5114,538,0 chrII 459048 . T C 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.364;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.568;QD=23.27;ReadPosRankSum=1.705;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3012,324,0 chrII 459093 . T C 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=151;Dels=0.00;FS=4.155;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.539;QD=20.32;ReadPosRankSum=1.709;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3102,345,0 chrII 459628 . A G 3847.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,166:170:99:3847,414,0 chrII 459672 . T C 3852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=160;Dels=0.00;FS=3.322;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.599;QD=24.08;ReadPosRankSum=1.689;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3852,420,0 chrII 460202 . A G 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=2.987;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=-1.323;QD=21.92;ReadPosRankSum=2.381;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3189,339,0 chrII 460203 . T C 3188 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=22.61;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3221,339,0 chrII 460337 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=1.162;QD=22.16;ReadPosRankSum=1.710;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3502,372,0 chrII 460385 . G A 3482.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=25.23;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3482,366,0 chrII 460418 . A T 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=99;Dels=0.00;FS=2.895;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-0.037;QD=22.86;ReadPosRankSum=2.400;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2296,243,0 chrII 460459 . G A 2865 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=25.13;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2898,297,0 chrII 460520 . G A 3096 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=22.43;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3129,333,0 chrII 460561 . A G 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=-0.013;QD=20.21;ReadPosRankSum=1.679;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2681,294,0 chrII 460566 . A G 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=0.417;QD=19.78;ReadPosRankSum=1.707;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2763,300,0 chrII 460668 . T C 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.389;DP=127;Dels=0.00;FS=4.931;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.600;QD=23.76;ReadPosRankSum=3.389;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:4,123:127:99:3051,330,0 chrII 460748 . A G 4565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.117;DP=198;Dels=0.01;FS=5.163;HaplotypeScore=190.1066;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-1.591;QD=23.06;ReadPosRankSum=1.679;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4565,487,0 chrII 460876 . G C 5120.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=23.70;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5120,553,0 chrII 461012 . T C 5365.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=18.2349;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.54;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5365,600,0 chrII 461079 . T A 6231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=9.0540;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=0.077;QD=23.08;ReadPosRankSum=1.694;SB=-3.187e+03 GT:AD:DP:GQ:PL 1/1:1,269:270:99:6231,664,0 chrII 461088 . A T 5848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=267;Dels=0.00;FS=11.505;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.620;QD=21.90;ReadPosRankSum=2.936;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:3,264:267:99:5848,633,0 chrII 461298 . A G 4675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.577;QD=20.41;ReadPosRankSum=1.686;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:4675,519,0 chrII 461718 . G A 2929 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=11.5034;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=18.90;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:2962,324,0 chrII 461771 . C T 3614.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=19.8916;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.31;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3614,381,0 chrII 461817 . A G 5218.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.05;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5218,564,0 chrII 461852 . C G 6043.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=13.5923;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.57;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:6043,634,0 chrII 461887 . G C 4714.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.4596;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.13;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,209:213:99:4714,531,0 chrII 462116 . T C 2942 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.6476;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.72;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2975,324,0 chrII 462229 . G A 2173 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=10.3386;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.37;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2206,231,0 chrII 462458 . T C 2367 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.91;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2400,258,0 chrII 462560 . A G 1234 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.28;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1267,138,0 chrII 462587 . G A 1155 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.79;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1188,129,0 chrII 462765 . T C 1110 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1143,126,0 chrII 462876 . G A 2996 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.83;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3029,324,0 chrII 462933 . C T 4716.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4716,502,0 chrII 463266 . A C 5814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=32.3180;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.373;QD=21.30;ReadPosRankSum=1.719;SB=-2.999e+03 GT:AD:DP:GQ:PL 1/1:1,269:273:99:5814,645,0 chrII 463354 . G A 4388.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=22.27;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4388,466,0 chrII 463357 . C T 4305.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=22.08;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4305,451,0 chrII 463509 . A G 5017.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.23;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5017,541,0 chrII 463791 . G A 8790.01 PASS AC=2;AF=1.00;AN=2;DP=352;Dels=0.00;FS=0.000;HaplotypeScore=15.1616;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=24.97;SB=-4.796e+03 GT:AD:DP:GQ:PL 1/1:0,349:352:99:8790,910,0 chrII 464001 . G A 16395.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=661;Dels=0.00;FS=0.000;HaplotypeScore=35.2841;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-0.708;QD=24.80;ReadPosRankSum=1.721;SB=-4.539e+03 GT:AD:DP:GQ:PL 1/1:1,655:661:99:16395,1719,0 chrII 464058 . T C 5579.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.969;DP=614;Dels=0.00;FS=3.641;HaplotypeScore=78.6336;MLEAC=1;MLEAF=0.500;MQ=52.85;MQ0=2;MQRankSum=0.211;QD=9.09;ReadPosRankSum=-1.672;SB=-1.334e+03 GT:AD:DP:GQ:PL 0/1:296,314:614:99:5579,0,3443 chrII 464061 . T C 4302.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.328;DP=607;Dels=0.00;FS=0.353;HaplotypeScore=70.4329;MLEAC=1;MLEAF=0.500;MQ=52.98;MQ0=2;MQRankSum=-1.546;QD=7.09;ReadPosRankSum=-4.590;SB=-1.208e+03 GT:AD:DP:GQ:PL 0/1:338,269:607:99:4302,0,4365 chrII 464079 . T C 7941.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.271;DP=603;Dels=0.00;FS=8.572;HaplotypeScore=65.3712;MLEAC=1;MLEAF=0.500;MQ=54.52;MQ0=2;MQRankSum=4.318;QD=13.17;ReadPosRankSum=15.462;SB=-2.622e+03 GT:AD:DP:GQ:PL 0/1:142,461:603:99:7941,0,693 chrII 464151 . C T 630.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.413;DP=778;Dels=0.00;FS=12.592;HaplotypeScore=82.3135;MLEAC=1;MLEAF=0.500;MQ=52.02;MQ0=0;MQRankSum=-10.616;QD=0.81;ReadPosRankSum=-10.409;SB=-1.091e+03 GT:AD:DP:GQ:PL 0/1:592,177:778:99:660,0,10430 chrII 464160 . A T 2148.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;DP=775;Dels=0.00;FS=11.873;HaplotypeScore=90.4722;MLEAC=1;MLEAF=0.500;MQ=51.82;MQ0=0;MQRankSum=-4.229;QD=2.77;ReadPosRankSum=-10.632;SB=-2.535e+03 GT:AD:DP:GQ:PL 0/1:481,293:775:99:2178,0,7368 chrII 464184 . C T 5069.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.687;DP=773;Dels=0.00;FS=49.876;HaplotypeScore=63.3886;MLEAC=1;MLEAF=0.500;MQ=51.33;MQ0=0;MQRankSum=1.328;QD=6.56;ReadPosRankSum=-4.793;SB=-1.947e+03 GT:AD:DP:GQ:PL 0/1:441,331:773:99:5069,0,4840 chrII 464193 . C T 3176.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.965;DP=732;Dels=0.00;FS=50.216;HaplotypeScore=34.4619;MLEAC=1;MLEAF=0.500;MQ=50.99;MQ0=0;MQRankSum=-0.123;QD=4.34;ReadPosRankSum=-10.243;SB=-1.227e+03 GT:AD:DP:GQ:PL 0/1:482,245:732:99:3206,0,5421 chrII 464205 . T A,C 9343.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=7.499;DP=776;Dels=0.00;FS=78.304;HaplotypeScore=41.6082;MLEAC=1,1;MLEAF=0.500,0.500;MQ=52.12;MQ0=0;MQRankSum=-1.065;QD=12.04;ReadPosRankSum=5.540;SB=-7.664e+03 GT:AD:DP:GQ:PL 1/2:24,600,150:776:99:9343,1783,885,7560,0,7332 chrII 464208 . T C 351.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.862;DP=802;Dels=0.00;FS=39.651;HaplotypeScore=60.7931;MLEAC=1;MLEAF=0.500;MQ=52.30;MQ0=0;MQRankSum=-5.841;QD=0.44;ReadPosRankSum=-7.790;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:680,122:802:99:381,0,8010 chrII 464259 . A T 11673.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.365;DP=833;Dels=0.00;FS=6.720;HaplotypeScore=71.4695;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-0.019;QD=14.01;ReadPosRankSum=4.197;SB=-5.833e+03 GT:AD:DP:GQ:PL 1/1:8,823:832:99:11673,1240,0 chrII 464478 . G A 5301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=23.8581;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.439;QD=20.79;ReadPosRankSum=-0.053;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:2,253:255:99:5301,568,0 chrII 464655 . A G 4323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-1.025;QD=21.51;ReadPosRankSum=1.715;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4323,468,0 chrII 464667 . G A 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.0023;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=1.240;QD=20.29;ReadPosRankSum=0.237;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3855,411,0 chrII 464940 . G T 6958.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.68;SB=-3.113e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:6958,727,0 chrII 465103 . T C 5544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=271;Dels=0.00;FS=10.178;HaplotypeScore=13.0189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.031;QD=20.46;ReadPosRankSum=2.386;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:2,268:271:99:5544,598,0 chrII 465156 . T C 4802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=223;Dels=0.00;FS=10.451;HaplotypeScore=15.8951;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.271;QD=21.53;ReadPosRankSum=2.383;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:2,220:223:99:4802,514,0 chrII 465493 . C T 7361.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=21.0643;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.29;SB=-3.873e+03 GT:AD:DP:GQ:PL 1/1:0,300:303:99:7361,784,0 chrII 465618 . G A 3427.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.70;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3427,378,0 chrII 465657 . G C 3071 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.9762;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.07;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3104,342,0 chrII 465694 . T C 3443.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.66;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3443,390,0 chrII 465824 . A C 3423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=168;Dels=0.00;FS=3.199;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.543;QD=20.38;ReadPosRankSum=1.690;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:1,164:168:99:3423,384,0 chrII 465853 . C T 3481.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.8660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.68;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:3481,375,0 chrII 465979 . G A 2916 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.81;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2949,309,0 chrII 466295 . A G 5333.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.04;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5333,606,0 chrII 466414 . A G 6636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=292;Dels=0.00;FS=7.686;HaplotypeScore=11.5605;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.334;QD=22.73;ReadPosRankSum=1.036;SB=-2.947e+03 GT:AD:DP:GQ:PL 1/1:2,288:292:99:6636,747,0 chrII 466676 . T C 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=178;Dels=0.00;FS=7.872;HaplotypeScore=14.4816;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=0.765;QD=19.53;ReadPosRankSum=0.934;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,173:178:99:3476,370,0 chrII 466718 . T C 3218.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.37;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3251,351,0 chrII 466724 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.926;HaplotypeScore=4.1038;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=0.563;QD=19.71;ReadPosRankSum=1.711;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3269,345,0 chrII 466848 . A G 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=137;Dels=0.00;FS=3.075;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.255;QD=21.64;ReadPosRankSum=1.656;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2997,324,0 chrII 466961 . T A 2211 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=17.98;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2244,252,0 chrII 466995 . T A 2563 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.7732;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=18.99;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2596,279,0 chrII 467369 . G A 6309.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=15.9196;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.74;SB=-3.296e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:6309,664,0 chrII 467538 . C T 4288.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.55;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4288,456,0 chrII 467580 . C T 4607.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.63;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4607,492,0 chrII 467631 . A G 4679.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4679,510,0 chrII 467964 . C T 6792.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.09;SB=-3.434e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:6792,736,0 chrII 468345 . A G 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=174;Dels=0.00;FS=11.825;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.187;QD=23.40;ReadPosRankSum=2.948;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:3,169:174:99:4072,435,0 chrII 468566 . A G 5217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=211;Dels=0.00;FS=3.026;HaplotypeScore=16.8160;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.229;QD=24.73;ReadPosRankSum=2.426;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:2,207:211:99:5217,562,0 chrII 468804 . A G 5179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=207;Dels=0.00;FS=3.458;HaplotypeScore=12.7820;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.138;QD=25.02;ReadPosRankSum=1.715;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:1,203:207:99:5179,561,0 chrII 468870 . C T 4917.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=25.09;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4917,514,0 chrII 469086 . C T 5870.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=18.8228;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=24.56;SB=-3.185e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5870,636,0 chrII 469119 . T C 4300.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.72;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4300,486,0 chrII 469122 . G A 4431.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.04;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4431,495,0 chrII 469152 . G A 3841.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.99;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3841,408,0 chrII 469344 . C T 3209 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.5986;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.69;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,151:163:99:3242,366,0 chrII 469374 . G A 3540.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.25;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3540,375,0 chrII 469512 . T C 2454 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.28;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2487,288,0 chrII 469575 . T C 2048 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.76;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2081,222,0 chrII 469648 . C T 419 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=12.70;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:48:452,48,0 chrII 469663 . T C 808 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.36;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:93:841,93,0 chrII 469766 . T C 2219 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.73;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2252,243,0 chrII 469816 . G A 1708 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=25.12;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1741,180,0 chrII 470054 . C T 3141 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.5996;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.27;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3174,348,0 chrII 470150 . T C 4177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=178;Dels=0.00;FS=6.663;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.040;QD=23.47;ReadPosRankSum=2.422;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:4177,450,0 chrII 470377 . C T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.25;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4316,462,0 chrII 470537 . C T 4313.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.19;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4313,454,0 chrII 470582 . A T 4288.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.30;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4288,457,0 chrII 470609 . A G 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=187;Dels=0.00;FS=2.973;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-1.116;QD=21.84;ReadPosRankSum=2.370;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4084,459,0 chrII 470873 . T C 4318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=178;Dels=0.00;FS=2.954;HaplotypeScore=12.8091;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=2.198;QD=24.26;ReadPosRankSum=2.408;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:4318,468,0 chrII 471002 . A G 3820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=173;Dels=0.00;FS=6.081;HaplotypeScore=13.0558;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.491;QD=22.08;ReadPosRankSum=2.936;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:3820,423,0 chrII 471887 . C G 3726.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.70;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3726,411,0 chrII 472319 . A C 5914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=13.6884;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.368;QD=22.92;ReadPosRankSum=1.566;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:2,248:258:99:5914,634,0 chrII 472718 . G A 4321.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.2922;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.05;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4321,474,0 chrII 472731 . T A 4403.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.93;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4403,463,0 chrII 472853 . T C 5437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=253;Dels=0.00;FS=7.268;HaplotypeScore=13.1775;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.905;QD=21.49;ReadPosRankSum=2.342;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:2,249:253:99:5437,603,0 chrII 473429 . G A 4135.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4135,453,0 chrII 473605 . T G 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.6880;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.024;QD=22.34;ReadPosRankSum=-1.195;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3228,332,0 chrII 473668 . A C 4120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=168;Dels=0.00;FS=3.620;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.052;QD=24.52;ReadPosRankSum=1.650;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4120,444,0 chrII 474179 . C T 1791 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.9660;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.35;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1824,192,0 chrII 474281 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.77;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3708,388,0 chrII 474348 . A G 4317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=196;Dels=0.00;FS=9.678;HaplotypeScore=15.1751;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-0.892;QD=22.03;ReadPosRankSum=2.399;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,192:196:99:4317,462,0 chrII 475550 . A G 4774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=3.475;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.025;QD=22.95;ReadPosRankSum=1.648;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4774,510,0 chrII 475721 . G A 4851.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.75;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4851,525,0 chrII 475856 . T C 5571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=313;Dels=0.00;FS=2.989;HaplotypeScore=9.0939;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.115;QD=17.80;ReadPosRankSum=2.434;SB=-3.836e+03 GT:AD:DP:GQ:PL 1/1:2,308:313:99:5571,615,0 chrII 475859 . A T 5740.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=4.2770;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.88;SB=-3.923e+03 GT:AD:DP:GQ:PL 1/1:0,304:304:99:5740,607,0 chrII 475985 . C T 5864.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.09;SB=-3.465e+03 GT:AD:DP:GQ:PL 1/1:0,275:278:99:5864,625,0 chrII 475994 . G A 5800.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.64;SB=-3.338e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:5800,613,0 chrII 476335 . G A 4121.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4121,427,0 chrII 476506 . T G 5851.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=15.3997;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.68;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5851,633,0 chrII 476602 . T G 6002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=242;Dels=0.00;FS=2.431;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.813;QD=24.80;ReadPosRankSum=2.946;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:3,238:242:99:6002,652,0 chrII 476730 . C T 6688.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=14.5556;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.63;SB=-3.623e+03 GT:AD:DP:GQ:PL 1/1:0,281:283:99:6688,718,0 chrII 476894 . G A 4922.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.31;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:4922,520,0 chrII 476910 . C T 3534.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=19.97;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3534,390,0 chrII 476954 . C T 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.366;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.000;QD=20.06;ReadPosRankSum=0.024;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:1,141:145:99:2942,305,0 chrII 477171 . G C 2086 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.73;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2119,234,0 chrII 477246 . T G 1942 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=20.88;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1975,213,0 chrII 477249 . T C 1998 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=21.48;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2031,222,0 chrII 477263 . G A 2160 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=21.82;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2193,234,0 chrII 477343 . A G 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.047;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.8511;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;MQRankSum=-0.433;QD=16.56;ReadPosRankSum=1.227;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:3,95:98:99:1656,165,0 chrII 479201 . G A 1487 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.04;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1520,162,0 chrII 479267 . C T 1082 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=7.9884;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.22;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1115,120,0 chrII 479318 . T A 1529 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.17;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1562,171,0 chrII 479376 . T C 2144 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.0342;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=22.33;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2177,234,0 chrII 479536 . C T 3625.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.54;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3625,396,0 chrII 479625 . A G 3517.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.8258;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3517,375,0 chrII 479684 . A G 4688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=199;Dels=0.00;FS=3.622;HaplotypeScore=12.6511;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.962;QD=23.56;ReadPosRankSum=1.680;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4688,504,0 chrII 479744 . G T 4129.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.75;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4129,453,0 chrII 479752 . G A 3734.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=18.58;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:3734,391,0 chrII 480069 . G A 3464.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=19.14;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3464,361,0 chrII 480074 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=179;Dels=0.00;FS=7.777;HaplotypeScore=6.7008;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=0.007;QD=18.59;ReadPosRankSum=2.422;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3327,357,0 chrII 480143 . C T 2994 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=17.93;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3027,324,0 chrII 480150 . T C 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=160;Dels=0.00;FS=2.940;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.161;QD=19.17;ReadPosRankSum=2.419;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3101,327,0 chrII 480237 . G A 3350.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.7516;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.59;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3350,354,0 chrII 480275 . C T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=23.37;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3389,372,0 chrII 480324 . A G 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=159;Dels=0.00;FS=2.582;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-0.647;QD=23.21;ReadPosRankSum=2.955;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:3,154:159:99:3690,402,0 chrII 480674 . A G 3204 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.39;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3237,348,0 chrII 481140 . T C 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=133;Dels=0.00;FS=8.845;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.456;QD=22.21;ReadPosRankSum=2.338;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2987,318,0 chrII 481261 . C T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.80;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3665,399,0 chrII 481477 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.095;QD=23.18;ReadPosRankSum=1.661;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3384,366,0 chrII 481661 . G A 4354.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.0403;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.55;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4354,460,0 chrII 481670 . G A 4334.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.11;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4334,468,0 chrII 481711 . A G 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=198;Dels=0.00;FS=3.957;HaplotypeScore=10.5220;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.982;QD=21.96;ReadPosRankSum=1.679;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:2,193:198:99:4348,460,0 chrII 481964 . G A 4184.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.2783;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.92;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4184,450,0 chrII 482219 . G A 4960.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.4911;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.96;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4960,529,0 chrII 482984 . G A 3172 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.88;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3205,354,0 chrII 483785 . A G 4588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=193;Dels=0.00;FS=3.879;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.332;QD=23.77;ReadPosRankSum=1.714;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4588,492,0 chrII 483944 . A G 4449.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.8639;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.05;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4449,483,0 chrII 484231 . A G 3009 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.15;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3042,336,0 chrII 484506 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.28;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3497,361,0 chrII 484558 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.11;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,129:133:99:2840,315,0 chrII 484574 . G A 2888 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4937;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.71;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2921,306,0 chrII 484617 . G A 2767 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.45;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2800,306,0 chrII 484628 . G T 2704 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=19.31;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2737,303,0 chrII 485107 . T C 4853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=15.1210;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.502;QD=19.97;ReadPosRankSum=1.531;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,240:243:99:4853,534,0 chrII 485257 . T G 4980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.6909;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.658;QD=22.74;ReadPosRankSum=1.716;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,215:219:99:4980,561,0 chrII 485396 . T C 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=155;Dels=0.00;FS=9.821;HaplotypeScore=14.8643;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.654;QD=23.01;ReadPosRankSum=2.928;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3566,384,0 chrII 485585 . A G 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=154;Dels=0.00;FS=3.038;HaplotypeScore=14.6757;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=0.105;QD=22.87;ReadPosRankSum=2.401;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:2,150:154:99:3522,381,0 chrII 485633 . C T 3660.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.18;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3660,399,0 chrII 485764 . T C 2370 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.15;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2403,261,0 chrII 486033 . A G 3126 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9658;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.05;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3159,339,0 chrII 486404 . G C 2957 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.28;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2990,318,0 chrII 486737 . T C 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=150;Dels=0.00;FS=7.438;HaplotypeScore=8.1953;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=0.893;QD=22.05;ReadPosRankSum=2.400;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3307,360,0 chrII 486878 . G A 1701 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;QD=21.53;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1734,186,0 chrII 487047 . G A 209.01 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=13.93;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:27:242,27,0 chrII 487454 . G A 3542.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=17.7417;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.79;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3542,384,0 chrII 487661 . C G 6957.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.50;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,294:296:99:6957,771,0 chrII 488565 . C A 2429 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.50;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2462,264,0 chrII 488579 . A G 2428 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.49;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2461,270,0 chrII 488707 . G A 951 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=18.65;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:984,105,0 chrII 488755 . C G 974 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.29;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1007,108,0 chrII 488757 . G A 989 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.04;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1022,108,0 chrII 488875 . T A 1554 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=26.34;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1587,165,0 chrII 488899 . G A 2417 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=25.71;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2450,252,0 chrII 489223 . G A 5325.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.82;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5325,553,0 chrII 489238 . A G 5169.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=19.65;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:5169,553,0 chrII 489241 . A G 5191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=275;Dels=0.00;FS=4.019;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=-0.057;QD=18.88;ReadPosRankSum=1.719;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:1,274:275:99:5191,561,0 chrII 489688 . G A 5706.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=9.2423;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=20.82;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:5706,621,0 chrII 489703 . T C 5465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.431;DP=269;Dels=0.00;FS=8.082;HaplotypeScore=7.7501;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=-0.691;QD=20.32;ReadPosRankSum=2.395;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:2,266:269:99:5465,586,0 chrII 489712 . G A 5196.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=20.38;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5196,556,0 chrII 489778 . C T 5082.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=13.2236;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.57;SB=-3.173e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5082,546,0 chrII 489805 . G A 6525.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=13.5210;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.14;SB=-3.329e+03 GT:AD:DP:GQ:PL 1/1:0,280:282:99:6525,691,0 chrII 490264 . C T 7668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=31.2637;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.224;QD=22.49;ReadPosRankSum=0.858;SB=-3.862e+03 GT:AD:DP:GQ:PL 1/1:1,340:341:99:7668,826,0 chrII 490619 . A C 5121.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.61;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5121,558,0 chrII 491265 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=14.1675;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.79;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2174,234,0 chrII 492025 . A C 4755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.1428;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.659;QD=20.95;ReadPosRankSum=1.717;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4755,516,0 chrII 495627 . C T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.19;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3571,372,0 chrII 497021 . G C 3823.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3823,423,0 chrII 498348 . G A 4482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.254;QD=24.76;ReadPosRankSum=-0.373;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4482,466,0 chrII 498404 . T A 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=179;Dels=0.00;FS=4.675;HaplotypeScore=15.2421;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.784;QD=21.66;ReadPosRankSum=1.693;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3878,420,0 chrII 498500 . T C 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=155;Dels=0.00;FS=6.645;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.463;QD=24.05;ReadPosRankSum=2.320;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:2,150:155:99:3727,396,0 chrII 498575 . A G 4137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=3.688;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=0.651;QD=23.91;ReadPosRankSum=1.652;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4137,441,0 chrII 498596 . C T 3784.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.52;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3784,400,0 chrII 498623 . C T 3351.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.76;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3351,348,0 chrII 498674 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=0.257;QD=20.72;ReadPosRankSum=1.710;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3269,360,0 chrII 498695 . C T 3395.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=23.10;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3395,360,0 chrII 498697 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=0.375;QD=22.10;ReadPosRankSum=1.709;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3271,348,0 chrII 498782 . T C 2724 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.64;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2757,303,0 chrII 498905 . A G 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=1.440;QD=21.52;ReadPosRankSum=2.376;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2185,240,0 chrII 498935 . C T 1333 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=20.83;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1366,156,0 chrII 498937 . A G 1372 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=21.78;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1405,159,0 chrII 498959 . G A 984 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=17.89;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1017,114,0 chrII 499010 . G A 1012 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=18.40;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1045,111,0 chrII 499037 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.90;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1325,141,0 chrII 499049 . T A 1267 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.44;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1300,138,0 chrII 499070 . A G 1041 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.59;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1074,117,0 chrII 499194 . A C 945 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=25.54;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:978,108,0 chrII 499294 . A G 797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.433;QD=24.91;ReadPosRankSum=1.625;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:90:830,90,0 chrII 499401 . A C 821 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.81;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:854,93,0 chrII 499454 . T C 566 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.21;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:66:599,66,0 chrII 499494 . G T 508 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.17;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,23:24:57:541,57,0 chrII 499621 . G T 1582 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.52;MQ0=0;QD=25.52;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1615,174,0 chrII 499780 . T C 3880.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.7155;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=25.19;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3880,420,0 chrII 499937 . T C 4796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=193;Dels=0.00;FS=2.999;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.113;QD=24.85;ReadPosRankSum=2.411;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4796,513,0 chrII 499985 . G A 4740.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.94;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4740,502,0 chrII 500276 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.72;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3680,405,0 chrII 500498 . T C 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.885;QD=23.78;ReadPosRankSum=1.713;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4305,465,0 chrII 500795 . G T 4625.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.4416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4625,495,0 chrII 500843 . T A 4214.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4214,456,0 chrII 500915 . A T 4370.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.3622;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=23.00;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4370,474,0 chrII 500944 . C G 4019.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.51;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4019,426,0 chrII 500945 . A T 3930.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=19.55;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:3930,415,0 chrII 501004 . A G 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.7481;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.893;QD=18.98;ReadPosRankSum=1.714;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:3645,396,0 chrII 501201 . A G 5055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=228;Dels=0.00;FS=6.981;HaplotypeScore=16.6376;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=1.075;QD=22.17;ReadPosRankSum=2.428;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:2,223:228:99:5055,546,0 chrII 501490 . A G 5038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=10.0923;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-0.796;QD=20.56;ReadPosRankSum=2.429;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:2,243:245:99:5038,541,0 chrII 501527 . C A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=145.7465;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;QD=0.15;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:6:55,6,0 chrII 501537 . C G 2651 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.63;MQ0=0;QD=14.41;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:2684,294,0 chrII 501576 . A T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.9792;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=18.46;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3342,360,0 chrII 501990 . C T 5161.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=17.7591;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.00;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5161,556,0 chrII 502058 . G A 4494.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.8260;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.41;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4494,478,0 chrII 502224 . G A 4452.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=16.2057;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.20;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4452,492,0 chrII 502292 . C T 4210.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.76;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4210,453,0 chrII 502305 . A T 3905.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=22.57;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3905,417,0 chrII 502313 . G A 3655.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=21.76;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3655,387,0 chrII 502627 . A G 2922 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.5432;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.64;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2955,315,0 chrII 503196 . C T 2552 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2585,273,0 chrII 503310 . G C 3539.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.91;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3539,375,0 chrII 503967 . A G 4748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.099;QD=20.47;ReadPosRankSum=1.627;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:4748,507,0 chrII 504587 . C T 2747 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1647;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.52;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2780,291,0 chrII 504615 . T C 2607 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.47;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2640,285,0 chrII 504739 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.85;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3837,426,0 chrII 504741 . C T 3875.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.06;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3875,414,0 chrII 504833 . T C 4730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=15.7422;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.439;QD=23.42;ReadPosRankSum=1.715;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4730,516,0 chrII 505396 . T A 1378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.631;DP=102;Dels=0.03;FS=0.000;HaplotypeScore=37.8663;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=2.411;QD=13.51;ReadPosRankSum=1.458;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:4,93:99:99:1411,153,0 chrII 505399 . A T 1181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.334;DP=97;Dels=0.01;FS=2.345;HaplotypeScore=67.7764;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;MQRankSum=2.276;QD=12.18;ReadPosRankSum=2.140;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:24,70:96:99:1214,129,0 chrII 505431 . G A 177.03 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=3.28;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:24:210,24,0 chrII 505640 . T C 1360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.852;QD=21.59;ReadPosRankSum=1.677;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1393,153,0 chrII 505654 . G A 1390 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.72;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1423,147,0 chrII 505691 . T C 1611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.753;QD=20.92;ReadPosRankSum=2.322;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1644,180,0 chrII 505856 . C T 3133 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.38;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3166,348,0 chrII 506292 . A G 2784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=124;Dels=0.00;FS=3.823;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.296;QD=22.45;ReadPosRankSum=1.648;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2817,309,0 chrII 506342 . C T 2829 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.76;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2862,306,0 chrII 506364 . G C 2798 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.9077;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.13;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,135:139:99:2831,303,0 chrII 506696 . C T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.06;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3331,357,0 chrII 506915 . C T 3713.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.0362;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.11;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:3713,390,0 chrII 507219 . A G 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-0.765;QD=23.39;ReadPosRankSum=1.705;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:3097,333,0 chrII 507323 . A T 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=3.046;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.074;QD=22.93;ReadPosRankSum=1.618;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2807,294,0 chrII 507473 . T C 2445 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.74;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2478,270,0 chrII 507491 . T A 2214 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.59;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2247,243,0 chrII 507533 . G A 2444 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.82;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2477,273,0 chrII 507938 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=25.50;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:3017,312,0 chrII 508130 . A G 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=141;Dels=0.00;FS=4.027;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.860;QD=25.55;ReadPosRankSum=1.707;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:3603,387,0 chrII 508226 . G A 3353.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.84;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3353,346,0 chrII 508255 . A G 3352.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.6060;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.12;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3352,360,0 chrII 508385 . T A 3661.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3661,408,0 chrII 508631 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3341,366,0 chrII 508712 . A G 3662.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.7399;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.33;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3662,402,0 chrII 508784 . C T 3653.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.5046;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.97;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3653,402,0 chrII 508875 . C A 4123.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.83;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4123,459,0 chrII 508946 . A G 4118.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.22;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4118,444,0 chrII 509103 . T C 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=0.906;QD=20.49;ReadPosRankSum=1.692;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3544,384,0 chrII 509108 . T C 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=175;Dels=0.00;FS=2.993;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=0.206;QD=19.45;ReadPosRankSum=2.364;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:3404,381,0 chrII 509222 . G A 3778.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.32;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3778,402,0 chrII 509321 . T C 3139 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.35;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3172,351,0 chrII 509360 . G A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.03;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3503,378,0 chrII 509396 . A T 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.473;QD=20.91;ReadPosRankSum=1.638;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3107,342,0 chrII 509485 . A T 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=4.039;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=-0.601;QD=22.67;ReadPosRankSum=1.661;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3332,348,0 chrII 509507 . C T 2977 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=19.98;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3010,321,0 chrII 509627 . T C 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.6726;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.259;QD=23.67;ReadPosRankSum=1.689;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3858,420,0 chrII 509717 . C T 3577.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.65;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3577,390,0 chrII 509720 . A G 3636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-1.178;QD=20.78;ReadPosRankSum=1.633;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3636,390,0 chrII 509885 . G A 3967.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.34;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3967,415,0 chrII 510237 . A G 3773.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.59;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3773,408,0 chrII 511946 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.93;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3518,381,0 chrII 512167 . T C 3837.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.11;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3837,417,0 chrII 512285 . T C 4985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.7566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.132;QD=23.74;ReadPosRankSum=1.716;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4985,546,0 chrII 512345 . C T 4607.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.99;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4607,487,0 chrII 512880 . T C 3827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=174;Dels=0.00;FS=11.253;HaplotypeScore=10.5096;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-2.181;QD=21.99;ReadPosRankSum=2.365;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3827,414,0 chrII 512993 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.4615;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.11;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3192,333,0 chrII 513202 . T C 3600.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.90;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3600,381,0 chrII 513451 . G T 4021.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.3473;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.38;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4021,432,0 chrII 513591 . G A 2820 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.56;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2853,306,0 chrII 513601 . A C 2716 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.26;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2749,300,0 chrII 513777 . T C 2530 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.87;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2563,279,0 chrII 513994 . A G 2709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.023;QD=21.33;ReadPosRankSum=1.705;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2742,300,0 chrII 514077 . T C 2553 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.76;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2586,282,0 chrII 514089 . T A 2573 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.58;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2606,279,0 chrII 514468 . C T 2843 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2876,303,0 chrII 514806 . C T 3750.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3750,385,0 chrII 514842 . G A 4455.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.73;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4455,489,0 chrII 514935 . G A 4732.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=18.6948;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.52;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4732,490,0 chrII 515050 . T G 5342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=233;Dels=0.00;FS=3.029;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.283;QD=22.93;ReadPosRankSum=2.428;SB=-3.113e+03 GT:AD:DP:GQ:PL 1/1:2,228:233:99:5342,571,0 chrII 515130 . T C 4272.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.25;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4272,462,0 chrII 515157 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.58;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4065,429,0 chrII 515211 . G A 4224.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.5011;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.59;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4224,459,0 chrII 515316 . C G 2680 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.6652;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=19.71;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2713,291,0 chrII 515369 . A G 2446 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.5080;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=17.85;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2479,267,0 chrII 515762 . C T 4324.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.64;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4324,459,0 chrII 515871 . G A 3177 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=20.63;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3210,348,0 chrII 515876 . C T 3457.01 SnpCluster AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=21.61;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3457,375,0 chrII 515878 . C A 3277.01 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=20.74;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3277,351,0 chrII 515879 . A G 3189 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=19.81;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3222,348,0 chrII 515936 . A C 4197.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.1329;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=20.67;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4197,459,0 chrII 515987 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.2910;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.57;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3623,381,0 chrII 515996 . T C 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=157;Dels=0.00;FS=3.037;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-0.721;QD=21.27;ReadPosRankSum=2.370;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:3340,375,0 chrII 516343 . A G 4414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=218;Dels=0.00;FS=4.976;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=0.902;QD=20.25;ReadPosRankSum=1.652;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:4414,486,0 chrII 516344 . A G 4514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=216;Dels=0.00;FS=9.915;HaplotypeScore=4.8986;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.108;QD=20.90;ReadPosRankSum=2.370;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:4514,486,0 chrII 516924 . C T 4423.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=25.13;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4423,466,0 chrII 517153 . C G 3084 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.87;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,137:141:99:3117,336,0 chrII 517160 . G A 3012 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.15;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3045,330,0 chrII 517214 . C G 2098 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.2706;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.98;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2131,234,0 chrII 517253 . G A 1594 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.70;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1627,171,0 chrII 517283 . C A 1301 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=17.58;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1334,144,0 chrII 517291 . A C 1339 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.13;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1372,150,0 chrII 517334 . A G 1422 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.61;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1455,156,0 chrII 517410 . C T 1987 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.94;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2020,219,0 chrII 517470 . A G 2218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=103;Dels=0.00;FS=7.490;HaplotypeScore=9.5772;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.978;QD=21.53;ReadPosRankSum=1.698;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:1,100:103:99:2251,246,0 chrII 517497 . T C 2370 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.94;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2403,264,0 chrII 517631 . A G 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=168;Dels=0.00;FS=6.817;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.769;QD=23.78;ReadPosRankSum=2.390;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3995,429,0 chrII 517869 . G A 3915.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.10;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3915,420,0 chrII 518106 . T A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.97;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3795,402,0 chrII 518385 . T C 4244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=3.208;HaplotypeScore=10.6707;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.617;QD=23.19;ReadPosRankSum=1.713;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:1,179:183:99:4244,450,0 chrII 518844 . C T 3578.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.79;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3578,381,0 chrII 519060 . C T 3881.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.66;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3881,417,0 chrII 519087 . A G 3614.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.73;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3614,414,0 chrII 519317 . A G 6218.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.82;SB=-3.096e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:6218,664,0 chrII 519618 . C T 4340.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.4952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4340,477,0 chrII 519668 . A C 4220.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.9268;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.11;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:4220,459,0 chrII 519873 . T C 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.315;DP=161;Dels=0.00;FS=9.161;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.301;QD=21.22;ReadPosRankSum=3.382;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:4,154:161:99:3416,378,0 chrII 519924 . C T 4696.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.59;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4696,490,0 chrII 520147 . C T 4646.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.07;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4646,493,0 chrII 520292 . T C 4269.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.6539;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.83;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4269,456,0 chrII 520340 . T C 4408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=185;Dels=0.00;FS=6.091;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.027;QD=23.83;ReadPosRankSum=2.962;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:3,181:185:99:4408,474,0 chrII 520452 . G A 3878.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.36;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3878,426,0 chrII 520537 . G A 4506.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.97;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4506,472,0 chrII 520564 . G A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0640;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.98;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3735,408,0 chrII 520611 . T C 3427.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.42;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3427,372,0 chrII 520641 . A G 3571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=168;Dels=0.00;FS=2.997;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.797;QD=21.26;ReadPosRankSum=2.420;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3571,393,0 chrII 520673 . T C 2907 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=19.00;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2940,318,0 chrII 520674 . T C 2934 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=19.18;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2967,315,0 chrII 520823 . T C 2832 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3090;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.95;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2865,312,0 chrII 520962 . T C 2948 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=19.27;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2981,324,0 chrII 520965 . T G 2941 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=19.10;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2974,324,0 chrII 520983 . G A 3155 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.12;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3188,351,0 chrII 521049 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.97;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2980,312,0 chrII 521113 . T C 3288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=143;Dels=0.00;FS=6.429;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=2.294;QD=22.99;ReadPosRankSum=2.398;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3288,351,0 chrII 521403 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=22.18;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3393,366,0 chrII 521427 . G A 3036 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=20.79;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3069,327,0 chrII 521433 . A G 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=140;Dels=0.00;FS=6.243;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;MQRankSum=-0.964;QD=17.84;ReadPosRankSum=2.361;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2530,285,0 chrII 521451 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=18.78;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2549,276,0 chrII 521478 . G A 2641 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=19.71;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2674,282,0 chrII 521571 . G T 3598.01 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=21.94;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3598,384,0 chrII 521574 . G A 3421.01 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=20.73;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3421,369,0 chrII 521577 . T C 3226.07 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=3.332;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;MQRankSum=-0.082;QD=19.20;ReadPosRankSum=1.711;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3259,354,0 chrII 521631 . T C 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;MQRankSum=0.283;QD=21.14;ReadPosRankSum=1.687;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3277,363,0 chrII 521652 . T C 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=148;Dels=0.00;FS=3.001;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=-0.855;QD=20.99;ReadPosRankSum=2.416;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3139,342,0 chrII 521820 . G A 3763.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=25.26;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3763,399,0 chrII 521976 . G T 2238 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.81;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2271,252,0 chrII 522035 . G A 3077 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3110,330,0 chrII 522555 . G C 3484.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3484,378,0 chrII 522636 . C T 2300 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.30;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2333,249,0 chrII 522647 . C G 1985 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.27;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2018,222,0 chrII 522687 . T C 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=3.090;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=0.031;QD=16.62;ReadPosRankSum=1.701;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:1878,204,0 chrII 522696 . T C 1758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=110;Dels=0.00;FS=6.643;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-1.140;QD=15.98;ReadPosRankSum=2.337;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:1791,198,0 chrII 522774 . C T 2770 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.15;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2803,309,0 chrII 522849 . C A 2734 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.78;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2767,285,0 chrII 522921 . A G 2995 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=25.82;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:3028,321,0 chrII 523127 . A G 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=3.995;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.502;QD=23.80;ReadPosRankSum=1.632;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3285,354,0 chrII 523206 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2942,321,0 chrII 523386 . G A 2584 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2617,276,0 chrII 523695 . G A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.67;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3401,357,0 chrII 523878 . A G 5524.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=21.66;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5524,586,0 chrII 523893 . C A 5023.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=20.34;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:5023,552,0 chrII 523926 . G C 3979.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.8145;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=17.45;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,221:228:99:3979,444,0 chrII 523940 . T C 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=218;Dels=0.00;FS=2.765;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=0.085;QD=17.01;ReadPosRankSum=2.427;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:2,214:218:99:3708,408,0 chrII 524097 . G A 5755.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=17.1818;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.75;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:5755,619,0 chrII 524475 . A G 2674 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2707,288,0 chrII 524592 . G A 2430 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2463,261,0 chrII 524659 . C T 2597 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.78;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2630,282,0 chrII 524751 . G A 3042 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.14;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3075,315,0 chrII 524916 . T A 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=3.096;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.396;QD=23.51;ReadPosRankSum=1.687;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3597,375,0 chrII 525483 . T A 5231.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=3.4318;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.53;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5231,561,0 chrII 525492 . T A 4929.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=4.1672;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.91;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4929,523,0 chrII 525674 . G A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.44;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3376,363,0 chrII 526374 . A G 3548.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.34;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3548,393,0 chrII 526512 . T C 3171 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5178;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.43;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3204,357,0 chrII 526527 . T C 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=4.132;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-1.613;QD=21.15;ReadPosRankSum=1.708;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3100,330,0 chrII 526594 . A G 3005 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.4742;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.44;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3038,333,0 chrII 526612 . G A 3479.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=23.99;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3479,375,0 chrII 526673 . G A 2782 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.08;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2815,300,0 chrII 526690 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=20.80;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2404,252,0 chrII 526922 . C A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.84;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3695,405,0 chrII 527211 . G A 6492.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=13.2643;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.97;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,257:260:99:6492,688,0 chrII 527412 . A G 6685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.274;DP=309;Dels=0.00;FS=5.189;HaplotypeScore=18.5085;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.976;QD=21.63;ReadPosRankSum=3.433;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:4,303:309:99:6685,729,0 chrII 527451 . A C 5859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=269;Dels=0.00;FS=2.813;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-1.415;QD=21.78;ReadPosRankSum=2.422;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:2,266:269:99:5859,631,0 chrII 527493 . C T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=20.39;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3405,369,0 chrII 527516 . C T 2292 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=16.37;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2325,246,0 chrII 527518 . G A 2114 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=15.54;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:2147,231,0 chrII 527528 . A G 1969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=6.925;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;MQRankSum=-1.373;QD=14.27;ReadPosRankSum=2.414;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:2002,225,0 chrII 527601 . G A 3894.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.13;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3894,414,0 chrII 528069 . T C 4091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=173;Dels=0.00;FS=3.296;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.392;QD=23.65;ReadPosRankSum=1.692;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4091,438,0 chrII 528108 . T C 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=141;Dels=0.00;FS=10.853;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.167;QD=20.01;ReadPosRankSum=2.921;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:3,136:141:99:2854,309,0 chrII 528511 . C G 3141 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.7637;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.51;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3174,354,0 chrII 528754 . T A 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.065;DP=111;Dels=0.00;FS=31.702;HaplotypeScore=26.0106;MLEAC=1;MLEAF=0.500;MQ=40.39;MQ0=0;MQRankSum=3.706;QD=0.15;ReadPosRankSum=-4.603;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,11:111:46:46,0,264 chrII 528775 . C T 1993 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=14.65;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2026,219,0 chrII 528793 . T C 2399 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.9005;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=15.58;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2432,267,0 chrII 529032 . A G 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=155;Dels=0.00;FS=3.036;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.157;QD=23.77;ReadPosRankSum=2.386;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3685,414,0 chrII 529081 . G A 4020.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.1226;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.65;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4020,447,0 chrII 529129 . A G 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=170;Dels=0.00;FS=6.859;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.737;QD=23.68;ReadPosRankSum=2.406;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4025,435,0 chrII 529298 . A G 4095.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.7205;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.02;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4095,447,0 chrII 529327 . G A 4502.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.33;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4502,469,0 chrII 529459 . C T 3836.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.07;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3836,405,0 chrII 529507 . T C 4165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=171;Dels=0.00;FS=10.490;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.053;QD=24.36;ReadPosRankSum=2.959;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:4165,450,0 chrII 529552 . A G 3895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=157;Dels=0.00;FS=3.066;HaplotypeScore=10.4992;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.333;QD=24.81;ReadPosRankSum=1.688;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3895,414,0 chrII 529840 . G A 3733.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.48;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3733,388,0 chrII 529864 . G A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.91;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3659,384,0 chrII 530040 . C G 3546.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.12;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3546,381,0 chrII 530080 . T C 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=169;Dels=0.00;FS=9.268;HaplotypeScore=6.8782;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.311;QD=23.31;ReadPosRankSum=2.958;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:3,165:169:99:3939,426,0 chrII 530098 . G A 3726.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.86;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3726,393,0 chrII 530153 . T C 4000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.233;QD=23.12;ReadPosRankSum=1.692;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4000,426,0 chrII 530473 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.15;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2163,234,0 chrII 530521 . T C 1915 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.35;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1948,213,0 chrII 530672 . C T 1311 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1344,141,0 chrII 531175 . A G 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=162;Dels=0.00;FS=2.584;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.962;QD=19.67;ReadPosRankSum=2.905;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:3,155:162:99:3219,357,0 chrII 531256 . C T 3787.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.54;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3787,414,0 chrII 531481 . A T 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=1.269;QD=20.65;ReadPosRankSum=1.714;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3861,411,0 chrII 531496 . A G 4212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=1.212;QD=21.06;ReadPosRankSum=1.715;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4212,456,0 chrII 531664 . C A 4645.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.58;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4645,487,0 chrII 532114 . T C 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=128;Dels=0.00;FS=7.225;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.817;QD=23.72;ReadPosRankSum=2.373;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3069,330,0 chrII 532216 . C T 3079 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.15;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3112,333,0 chrII 532452 . T C 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=149;Dels=0.00;FS=11.129;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;MQRankSum=-0.858;QD=24.77;ReadPosRankSum=2.953;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3690,393,0 chrII 532473 . C T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.5187;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=24.61;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3617,396,0 chrII 532578 . C T 2729 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=22.01;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2762,300,0 chrII 532597 . T C 2469 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;QD=21.28;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2502,267,0 chrII 532609 . T C 2250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;MQRankSum=-0.329;QD=18.60;ReadPosRankSum=1.675;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2283,249,0 chrII 532643 . G A 1719 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=0;QD=14.45;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1752,189,0 chrII 532654 . G A 1692 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=13.43;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1725,186,0 chrII 532658 . A G 1664 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.27;MQ0=0;MQRankSum=-1.045;QD=13.75;ReadPosRankSum=1.646;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1697,186,0 chrII 532659 . A G 1654 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;QD=13.45;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:1687,183,0 chrII 532705 . A T 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=147;Dels=0.00;FS=3.582;HaplotypeScore=7.6807;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=0.332;QD=17.56;ReadPosRankSum=1.661;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2614,276,0 chrII 532782 . G A 4471.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=24.57;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4471,466,0 chrII 532827 . T G 3897.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=22.27;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3897,426,0 chrII 532850 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=20.61;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3145,354,0 chrII 532864 . A C 2536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=3.274;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;MQRankSum=-0.509;QD=18.51;ReadPosRankSum=1.681;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2569,288,0 chrII 532899 . T C 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=3.549;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;MQRankSum=0.087;QD=18.23;ReadPosRankSum=1.646;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,119:123:99:2275,252,0 chrII 532929 . G A 2593 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.91;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2626,282,0 chrII 533002 . A G 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.497;QD=21.34;ReadPosRankSum=2.365;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3191,345,0 chrII 533095 . A C 1868 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=19.66;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1901,210,0 chrII 533102 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=19.64;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1722,186,0 chrII 533146 . G A 1128 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=65.1494;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=15.67;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1161,123,0 chrII 533152 . G A 46.11 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.098;DP=70;Dels=0.00;FS=6.874;HaplotypeScore=63.0838;MLEAC=1;MLEAF=0.500;MQ=46.55;MQ0=0;MQRankSum=0.335;QD=0.66;ReadPosRankSum=1.639;SB=-7.701e+02 GT:AD:DP:GQ:PL 0/1:2,68:70:13:76,0,13 chrII 533246 . A G 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=3.747;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.016;QD=23.56;ReadPosRankSum=1.700;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2601,279,0 chrII 533310 . G A 3416.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=23.56;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3416,366,0 chrII 533325 . T C 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.035;QD=21.48;ReadPosRankSum=1.639;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3255,357,0 chrII 533657 . C T 2912 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.26;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2945,321,0 chrII 533723 . G A 3069 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.49;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3102,333,0 chrII 533727 . A G 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.076;DP=163;Dels=0.00;FS=15.339;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;MQRankSum=-1.661;QD=18.34;ReadPosRankSum=3.944;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:6,157:163:99:3022,327,0 chrII 533745 . T A 3092 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=18.08;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3125,336,0 chrII 533760 . T A 2813 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=15.63;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2846,303,0 chrII 533767 . T C 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.3175;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;MQRankSum=-1.099;QD=13.73;ReadPosRankSum=1.676;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:2586,279,0 chrII 534460 . T C 5064.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.6856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:5064,561,0 chrII 534637 . C T 3085 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.16;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3118,333,0 chrII 534745 . T C 2132 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2165,243,0 chrII 534845 . T A 615 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;MQRankSum=-0.173;QD=15.37;ReadPosRankSum=1.646;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:69:648,69,0 chrII 534851 . C A 630 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=17.03;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:72:663,72,0 chrII 534852 . T A 639 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;MQRankSum=-0.234;QD=17.27;ReadPosRankSum=1.639;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:72:672,72,0 chrII 534922 . T C 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.801;QD=24.01;ReadPosRankSum=1.695;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2266,243,0 chrII 535096 . A T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=24.94;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3342,354,0 chrII 535193 . G A 2719 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.85;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2752,291,0 chrII 535517 . C T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=23.89;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3297,357,0 chrII 535535 . C T 3044 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=23.24;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3077,330,0 chrII 535549 . A G 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-0.368;QD=21.59;ReadPosRankSum=1.705;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2796,306,0 chrII 535736 . A G 4407.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=24.48;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4407,471,0 chrII 535775 . T C 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=171;Dels=0.00;FS=2.584;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.455;QD=24.50;ReadPosRankSum=2.334;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:4189,450,0 chrII 535883 . G A 4570.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.93;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4570,484,0 chrII 535991 . C G 4612.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=11.3259;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.63;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:0,226:235:99:4612,516,0 chrII 535995 . C T 4897.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.6525;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.20;SB=-3.017e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:4897,514,0 chrII 536426 . C A 3406.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.65;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3406,366,0 chrII 536475 . G A 3804.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5846;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=25.36;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3804,397,0 chrII 536637 . A G 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=165;Dels=0.00;FS=4.269;HaplotypeScore=7.1469;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-1.520;QD=21.89;ReadPosRankSum=1.690;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3612,408,0 chrII 536661 . T C 3141 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.7220;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.88;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3174,354,0 chrII 536673 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.49;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3332,363,0 chrII 536700 . G A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=19.17;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3374,363,0 chrII 536726 . T C 3664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=197;Dels=0.00;FS=6.545;HaplotypeScore=3.9826;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-0.517;QD=18.60;ReadPosRankSum=2.387;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:3664,408,0 chrII 536751 . T C 4378.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.7385;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.36;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4378,480,0 chrII 536808 . T A 5194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=226;Dels=0.00;FS=3.329;HaplotypeScore=13.1700;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.720;QD=22.98;ReadPosRankSum=1.701;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:5194,561,0 chrII 536917 . C T 4241.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.6892;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.56;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4241,448,0 chrII 537038 . C G 4267.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.97;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4267,459,0 chrII 537174 . G A 2427 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=21.48;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2460,261,0 chrII 537210 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=24.86;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3605,370,0 chrII 537282 . C T 2845 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.23;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2878,303,0 chrII 537351 . C T 1099 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;QD=13.91;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1132,120,0 chrII 537535 . G A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=22.94;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3487,366,0 chrII 537796 . A G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=0.160;QD=24.08;ReadPosRankSum=1.705;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3164,345,0 chrII 537821 . G A 2894 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=21.76;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2927,309,0 chrII 537829 . T C 2640 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=21.29;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2673,300,0 chrII 537888 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.08;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2969,309,0 chrII 537962 . T A 2444 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=21.63;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2477,267,0 chrII 537981 . T C 2151 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=19.38;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2184,231,0 chrII 538014 . C T 2466 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;QD=17.37;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2499,264,0 chrII 538023 . A G 2322 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;QD=15.28;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2355,258,0 chrII 538047 . G A 2017 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=14.10;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2050,228,0 chrII 538048 . A G 2054 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=14.46;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2087,228,0 chrII 538328 . C G 3297.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=15.6793;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.72;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3297,351,0 chrII 538427 . A C 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.704;DP=146;Dels=0.00;FS=9.867;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.800;QD=21.42;ReadPosRankSum=2.566;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3160,342,0 chrII 538428 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=22.50;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3250,345,0 chrII 538483 . A G 2841 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.01;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:2874,315,0 chrII 538507 . A G 3144 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.14;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3177,351,0 chrII 538836 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.10;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2481,273,0 chrII 538837 . A G 2469 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.47;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2502,273,0 chrII 538897 . A T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.91;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3440,384,0 chrII 538919 . A C 3580.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=20.23;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3580,378,0 chrII 538926 . G A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=20.83;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3562,381,0 chrII 538968 . T A 2760 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.40;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2793,297,0 chrII 539105 . T C 2387 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=23.87;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2420,264,0 chrII 539253 . G A 1352 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=17.33;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1385,156,0 chrII 539637 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.60;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3469,369,0 chrII 539810 . A T 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=127;Dels=0.00;FS=5.017;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.405;QD=23.17;ReadPosRankSum=1.623;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2975,315,0 chrII 539825 . G T 2982 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.05;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3015,318,0 chrII 539861 . A G 2872 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.61;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2905,312,0 chrII 539908 . G A 2624 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.75;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2657,276,0 chrII 540296 . G A 4672.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.25;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4672,490,0 chrII 540838 . G A 4525.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=22.51;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4525,486,0 chrII 541093 . C T 1606 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.89;MQ0=0;QD=10.78;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:1639,168,0 chrII 541103 . A G 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=2.696;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.84;MQ0=0;MQRankSum=0.773;QD=11.05;ReadPosRankSum=2.417;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:1702,183,0 chrII 541108 . A T 1950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.27;MQ0=0;MQRankSum=-0.466;QD=12.50;ReadPosRankSum=1.710;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:1983,204,0 chrII 541139 . G A 2221 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.15;MQ0=0;QD=15.75;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:2254,234,0 chrII 541156 . G A 2359 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=19.82;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2392,252,0 chrII 541186 . A G 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=3.268;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;MQRankSum=-1.566;QD=21.60;ReadPosRankSum=1.699;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2279,246,0 chrII 541386 . A G 1497 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=19.96;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1530,162,0 chrII 541425 . A G 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-0.176;QD=21.05;ReadPosRankSum=2.386;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1654,180,0 chrII 541493 . C T 63.51 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.87;SB=-8.652e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:12:96,12,0 chrII 541494 . A G 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.631;QD=1.12;ReadPosRankSum=-1.733;SB=-8.498e+01 GT:AD:DP:GQ:PL 1/1:1,33:34:9:70,9,0 chrII 541521 . A T 766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.841;QD=10.94;ReadPosRankSum=0.148;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:84:799,84,0 chrII 541524 . A G 742 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.45;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:84:775,84,0 chrII 541574 . T A 557 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=47;Dels=0.00;FS=11.203;HaplotypeScore=241.4941;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.501;QD=11.85;ReadPosRankSum=2.536;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:5,42:47:40:590,40,0 chrII 541579 . T G 576 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.573;DP=47;Dels=0.00;FS=14.540;HaplotypeScore=42.3811;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.858;QD=12.26;ReadPosRankSum=0.210;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:4,43:47:66:609,66,0 chrII 541582 . A G 625 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.602;DP=49;Dels=0.00;FS=15.065;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=30.88;MQ0=0;MQRankSum=-0.566;QD=12.76;ReadPosRankSum=-1.296;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:4,45:49:72:658,72,0 chrII 541588 . C G 657 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.73;MQ0=0;QD=13.14;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:75:690,75,0 chrII 542283 . T C 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.607;DP=111;Dels=0.00;FS=3.050;HaplotypeScore=9.8450;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.514;QD=21.89;ReadPosRankSum=1.514;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2463,244,0 chrII 542402 . G A 2976 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.0600;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.89;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3009,321,0 chrII 542430 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=21.81;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2803,291,0 chrII 542433 . T C 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=129;Dels=0.01;FS=6.767;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=0.720;QD=21.10;ReadPosRankSum=2.411;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2755,297,0 chrII 542481 . A C 2171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=0.340;QD=19.38;ReadPosRankSum=1.670;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2204,237,0 chrII 542486 . A G 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.069;DP=110;Dels=0.00;FS=2.907;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=0.817;QD=17.49;ReadPosRankSum=2.383;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:1957,213,0 chrII 542535 . G A 2039 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.39;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2072,228,0 chrII 542592 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.51;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2667,294,0 chrII 542664 . G A 3203 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=24.45;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3236,336,0 chrII 542895 . G A 4032.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.86;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4032,424,0 chrII 543006 . T C 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.239;DP=152;Dels=0.00;FS=5.222;HaplotypeScore=13.1517;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-1.188;QD=24.49;ReadPosRankSum=3.401;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:4,147:152:99:3723,402,0 chrII 543054 . T C 3851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-1.732;QD=22.13;ReadPosRankSum=1.672;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3851,420,0 chrII 543063 . A G 3787.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.54;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3787,426,0 chrII 543092 . A G 4200.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.33;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4200,447,0 chrII 543129 . G A 5016.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.12;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5016,523,0 chrII 543246 . T C 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=1.024;QD=21.30;ReadPosRankSum=1.712;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3770,414,0 chrII 543264 . G A 3838.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.81;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3838,400,0 chrII 543299 . A G 3659.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.9046;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.33;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3659,390,0 chrII 543363 . C T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.0319;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.59;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3411,375,0 chrII 543393 . A G 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=136;Dels=0.00;FS=2.573;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.607;QD=22.11;ReadPosRankSum=2.934;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3040,327,0 chrII 543495 . C T 2766 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.31;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2799,306,0 chrII 543588 . T C 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.1037;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.155;QD=23.46;ReadPosRankSum=1.677;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2989,324,0 chrII 543997 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.7555;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.55;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3518,375,0 chrII 544134 . G A 3951.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.2378;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.52;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3951,423,0 chrII 544218 . C G 4153.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.69;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4153,468,0 chrII 544278 . C G 4360.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=22.59;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4360,489,0 chrII 544298 . G A 4043.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=22.34;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4043,421,0 chrII 544299 . C T 3867.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=21.72;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3867,414,0 chrII 544459 . C T 2982 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=21.00;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3015,312,0 chrII 544475 . T A 2377 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=19.33;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2410,264,0 chrII 544499 . C A 1945 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=19.65;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1978,216,0 chrII 544514 . T C 1734 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=20.16;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1767,189,0 chrII 544676 . T A 1328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.260;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-1.627;QD=20.12;ReadPosRankSum=1.680;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1361,150,0 chrII 544692 . G A 1528 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=22.14;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1561,171,0 chrII 544773 . G A 2210 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=26.00;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2243,234,0 chrII 544991 . C T 3999.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.15;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3999,432,0 chrII 545201 . C T 4172.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.84;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4172,444,0 chrII 545438 . C T 4977.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=22.94;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4977,543,0 chrII 545558 . C T 5056.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5056,538,0 chrII 545606 . A G 4212.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.6801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4212,471,0 chrII 545985 . G A 2308 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;QD=20.61;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2341,243,0 chrII 545996 . A C 2226 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=19.19;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2259,243,0 chrII 546010 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=20.35;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2577,261,0 chrII 546015 . A C 2295 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;QD=17.93;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2328,252,0 chrII 546026 . C T 2047 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=17.20;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2080,231,0 chrII 546118 . C A 2868 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=21.09;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2901,318,0 chrII 546124 . T C 2665 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=112.8840;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=20.66;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2698,288,0 chrII 546140 . A T 2539 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=107.6958;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=19.23;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2572,273,0 chrII 546224 . T C 2921 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.37;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2954,321,0 chrII 546316 . A G 3421.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=24.26;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3421,366,0 chrII 546732 . C G 5882.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=4.8625;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.42;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,286:288:99:5882,660,0 chrII 546739 . G A 6024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=296;Dels=0.00;FS=4.528;HaplotypeScore=5.7308;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=1.638;QD=20.35;ReadPosRankSum=0.476;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:1,294:296:99:6024,660,0 chrII 546889 . T A 6675.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.67;SB=-3.880e+03 GT:AD:DP:GQ:PL 1/1:0,282:282:99:6675,718,0 chrII 546933 . A G 6917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.432;DP=300;Dels=0.00;FS=5.216;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.657;QD=23.06;ReadPosRankSum=3.432;SB=-3.050e+03 GT:AD:DP:GQ:PL 1/1:4,294:300:99:6917,745,0 chrII 547137 . A G 4568.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.5780;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.07;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4568,510,0 chrII 547559 . C T 4289.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=24.37;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4289,451,0 chrII 547596 . G A 3845.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.01;FS=0.000;HaplotypeScore=2.6493;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=20.90;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3845,403,0 chrII 547617 . C T 3161 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=18.49;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3194,348,0 chrII 547633 . G T 2909 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=16.16;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2942,327,0 chrII 547636 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=15.65;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2850,315,0 chrII 547945 . G A 3537.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.6682;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.27;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,148:152:99:3537,372,0 chrII 547966 . A G 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=172;Dels=0.00;FS=15.281;HaplotypeScore=14.9357;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=0.339;QD=22.03;ReadPosRankSum=2.816;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:3,166:172:99:3790,411,0 chrII 548060 . A C 3285.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.51;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3285,348,0 chrII 548176 . G A 2720 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6954;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.25;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2753,294,0 chrII 548249 . C T 1918 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.40;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1951,210,0 chrII 548425 . T C 1784 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=25.13;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1817,201,0 chrII 548443 . T C 1715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.393;QD=22.87;ReadPosRankSum=1.594;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1748,189,0 chrII 549229 . G A 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=88;Dels=0.00;FS=3.612;HaplotypeScore=11.6583;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=0.265;QD=23.12;ReadPosRankSum=-0.550;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:1,84:88:99:2068,219,0 chrII 549465 . G T 1929 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=38.28;MQ0=0;QD=17.38;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1962,213,0 chrII 549466 . C A 1930 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=38.28;MQ0=0;QD=17.39;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1963,213,0 chrII 549489 . C T 1817 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=33.98;MQ0=0;QD=13.87;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1850,198,0 chrII 549494 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=33.23;MQ0=0;QD=11.81;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1628,177,0 chrII 549503 . T C 1533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=140;Dels=0.00;FS=2.696;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=34.68;MQ0=0;MQRankSum=-2.397;QD=10.95;ReadPosRankSum=2.415;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:1566,171,0 chrII 549517 . C T 1756 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.56;MQ0=0;QD=11.95;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:1789,189,0 chrII 549535 . A C 2238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=3.176;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;MQRankSum=-0.022;QD=13.99;ReadPosRankSum=1.645;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2271,246,0 chrII 549576 . A G 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=2.731;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-1.441;QD=19.08;ReadPosRankSum=2.418;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3028,321,0 chrII 549769 . G A 5409.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=18.0932;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=25.76;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:5409,574,0 chrII 549815 . A G 6479.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=20.5887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.92;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:6479,685,0 chrII 550124 . A G 4785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=226;Dels=0.00;FS=2.995;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-0.788;QD=21.17;ReadPosRankSum=2.417;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:4785,528,0 chrII 550133 . G A 5050.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=22.15;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5050,532,0 chrII 550142 . T C 5030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=246;Dels=0.00;FS=6.400;HaplotypeScore=6.8326;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.254;QD=20.45;ReadPosRankSum=2.390;SB=-3.130e+03 GT:AD:DP:GQ:PL 1/1:2,244:246:99:5030,564,0 chrII 550241 . C T 3928.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.55;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3928,417,0 chrII 550268 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.51;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3699,390,0 chrII 550330 . C A 4103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;DP=186;Dels=0.00;FS=4.633;HaplotypeScore=8.2016;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=1.602;QD=22.06;ReadPosRankSum=1.695;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4103,435,0 chrII 550736 . C T 4188.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.9760;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.78;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4188,456,0 chrII 550847 . A C 3888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.4342;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.445;QD=22.87;ReadPosRankSum=1.671;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3888,417,0 chrII 550907 . C T 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=18.1416;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.106;QD=22.29;ReadPosRankSum=1.500;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3656,390,0 chrII 551016 . C T 3966.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.0207;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.42;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3966,423,0 chrII 551109 . A G 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=150;Dels=0.00;FS=4.543;HaplotypeScore=17.8503;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.889;QD=24.11;ReadPosRankSum=1.638;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3616,393,0 chrII 551302 . A G 4838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=217;Dels=0.00;FS=8.132;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.131;QD=22.29;ReadPosRankSum=2.359;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:4838,540,0 chrII 551347 . G A 4265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.1769;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.696;QD=22.33;ReadPosRankSum=1.440;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4265,451,0 chrII 551377 . A G 3760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.8113;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-1.353;QD=20.22;ReadPosRankSum=1.694;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:1,182:186:99:3760,423,0 chrII 551397 . A G 4086.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.62;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4086,435,0 chrII 551704 . C T 2795 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.29;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2828,297,0 chrII 552046 . C T 1891 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.30;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1924,207,0 chrII 552407 . A G 3335.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2816;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.80;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3335,366,0 chrII 552684 . C T 3636.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.7933;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.92;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3636,379,0 chrII 552727 . T G 3490.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.42;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3490,378,0 chrII 552889 . G A 3824.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.04;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3824,405,0 chrII 553211 . T G 2889 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.78;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2922,318,0 chrII 553227 . G A 2757 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.05;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2790,294,0 chrII 553255 . C T 2718 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.23;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2751,294,0 chrII 553403 . A G 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.599;QD=22.59;ReadPosRankSum=1.643;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1795,195,0 chrII 553663 . C T 2591 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.91;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2624,282,0 chrII 553726 . G A 3902.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=25.67;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3902,409,0 chrII 553780 . G A 3433.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.02;FS=0.000;HaplotypeScore=8.0102;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.18;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3433,369,0 chrII 553783 . A G 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.341;DP=178;Dels=0.00;FS=17.662;HaplotypeScore=8.7988;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=0.094;QD=19.00;ReadPosRankSum=3.351;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:4,173:178:99:3382,369,0 chrII 553854 . T C 4465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.6283;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-0.034;QD=21.89;ReadPosRankSum=1.715;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4465,483,0 chrII 554441 . T C 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.274;QD=24.62;ReadPosRankSum=1.703;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3012,324,0 chrII 554537 . G A 2809 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2842,303,0 chrII 554599 . T C 3408.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3408,375,0 chrII 554815 . T C 4298.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.88;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4298,474,0 chrII 554862 . T C 4262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.029;QD=23.81;ReadPosRankSum=1.655;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4262,456,0 chrII 555375 . A C 979 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=10.53;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1012,111,0 chrII 555518 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.73;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2670,276,0 chrII 555562 . G A 2381 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=96.4730;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=21.26;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2414,255,0 chrII 555569 . A G 2089 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=19.34;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,104:108:99:2122,237,0 chrII 555623 . C G 2194 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.4553;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=15.78;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2227,240,0 chrII 555624 . A G 2198 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.4553;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=16.16;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2231,237,0 chrII 555819 . C T 4030.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=24.72;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4030,426,0 chrII 555881 . G T 2680 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.8758;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.10;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2713,291,0 chrII 555964 . G A 3901.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.5667;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.79;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3901,426,0 chrII 556110 . G A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.29;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3342,369,0 chrII 556201 . A G 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=69.5258;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=-0.406;QD=21.21;ReadPosRankSum=2.384;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2409,264,0 chrII 556272 . T C 2760 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=19.86;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2793,300,0 chrII 556275 . A G 2790 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5338;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.67;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2823,306,0 chrII 556310 . C A 2276 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.6524;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.88;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2309,246,0 chrII 556539 . T C 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.567;QD=25.42;ReadPosRankSum=2.954;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3839,420,0 chrII 556857 . T C 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.014;QD=24.78;ReadPosRankSum=1.677;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3131,342,0 chrII 556887 . T C 2676 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.93;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2709,297,0 chrII 557225 . G A 3803.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.86;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3803,408,0 chrII 557246 . A G 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=0.671;QD=20.79;ReadPosRankSum=1.712;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3639,405,0 chrII 557352 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.11;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3742,393,0 chrII 557651 . T A 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.684;QD=22.57;ReadPosRankSum=1.625;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3656,387,0 chrII 557658 . A G 3455.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.07;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3455,372,0 chrII 557763 . G C 3325.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3325,360,0 chrII 558380 . G C 1516 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=24.85;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1549,168,0 chrII 558397 . T C 1313 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=20.84;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1346,144,0 chrII 558401 . C T 1282 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=21.02;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1315,138,0 chrII 558471 . A G 1517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=6.500;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-1.525;QD=22.64;ReadPosRankSum=1.681;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1550,168,0 chrII 558499 . T C 1728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.344;DP=80;Dels=0.00;FS=2.445;HaplotypeScore=7.4199;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=1.777;QD=21.60;ReadPosRankSum=3.344;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:4,76:80:99:1761,189,0 chrII 558504 . G A 1666 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.09;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1699,174,0 chrII 558576 . T C 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=109.9102;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.887;QD=22.04;ReadPosRankSum=1.705;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2832,300,0 chrII 558597 . A C 2717 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.28;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2750,306,0 chrII 558866 . C G 5218.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.83;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5218,547,0 chrII 558881 . C T 5564.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.99;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5564,583,0 chrII 559000 . C T 5516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.682;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=18.7384;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.532;QD=23.78;ReadPosRankSum=0.232;SB=-3.019e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:5516,552,0 chrII 559131 . T C 5027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=225;Dels=0.00;FS=3.615;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=0.148;QD=22.34;ReadPosRankSum=1.654;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:1,222:225:99:5027,543,0 chrII 559186 . A G 4068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.667;DP=198;Dels=0.00;FS=2.565;HaplotypeScore=16.0573;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-1.108;QD=20.55;ReadPosRankSum=2.964;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:3,193:198:99:4068,432,0 chrII 559359 . T C 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=4.167;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-1.170;QD=19.85;ReadPosRankSum=1.665;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3110,333,0 chrII 559378 . G A 2630 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.4464;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.20;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2663,285,0 chrII 559515 . A G 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=122;Dels=0.00;FS=2.753;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.817;QD=22.07;ReadPosRankSum=2.389;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2725,300,0 chrII 559650 . C T 1429 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=19.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1462,153,0 chrII 559695 . A G 1148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.274;QD=16.64;ReadPosRankSum=1.681;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1181,129,0 chrII 559732 . T C 517 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.61;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:60:550,60,0 chrII 559922 . C G 1210 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.00;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1243,132,0 chrII 559960 . C T 1210 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=11.7203;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.61;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1243,135,0 chrII 560022 . C A 2484 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.79;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2517,270,0 chrII 560048 . G A 3190 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.15;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3223,333,0 chrII 560167 . T A 3470.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.44;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3470,369,0 chrII 560207 . C T 3753.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.5540;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.02;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3753,396,0 chrII 560494 . G C 4177.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4177,444,0 chrII 561150 . A T 2400 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2433,258,0 chrII 561193 . T A 1747 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.44;MQ0=0;QD=23.93;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1780,189,0 chrII 561291 . T C 1154 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.5237;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.08;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1187,126,0 chrII 561879 . G A 5036.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.9309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5036,529,0 chrII 562452 . C T 4087.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4087,441,0 chrII 562617 . T C 3739.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.37;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3739,399,0 chrII 562763 . G A 1921 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.11;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1954,210,0 chrII 562894 . A G 736 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.263;QD=22.30;ReadPosRankSum=1.628;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,32:33:84:769,84,0 chrII 562936 . C T 411 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=21.63;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,18:19:48:444,48,0 chrII 562937 . C T 399 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=22.17;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,17:18:48:432,48,0 chrII 562976 . A G 185.03 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.56;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:24:218,24,0 chrII 563135 . G A 87.51 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=41.7418;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=1.75;SB=-3.052e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:12:120,12,0 chrII 563175 . A T 846 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=16.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:93:879,93,0 chrII 563201 . G A 794 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=9.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:83:87:827,87,0 chrII 563203 . C T 814 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=9.69;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,84:84:87:847,87,0 chrII 563317 . T C 2476 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.93;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2509,276,0 chrII 563527 . T C 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=168;Dels=0.00;FS=6.008;HaplotypeScore=6.6564;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=2.036;QD=23.79;ReadPosRankSum=2.958;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3996,435,0 chrII 563635 . A G 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=191;Dels=0.00;FS=3.079;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-1.333;QD=19.50;ReadPosRankSum=1.714;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3725,396,0 chrII 563644 . G A 3455.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.88;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3455,378,0 chrII 563695 . G A 4828.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=19.55;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:4828,525,0 chrII 564041 . T A 6053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=0.642;QD=21.16;ReadPosRankSum=1.696;SB=-3.563e+03 GT:AD:DP:GQ:PL 1/1:1,285:286:99:6053,631,0 chrII 564047 . G A 6087.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=6.5448;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.49;SB=-3.963e+03 GT:AD:DP:GQ:PL 1/1:0,295:297:99:6087,646,0 chrII 564550 . C G 3213.98 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.3771;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.57;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3247,360,0 chrII 564615 . G T 2223 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=22.92;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2256,237,0 chrII 564636 . T C 1860 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=21.38;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,83:87:99:1893,216,0 chrII 564639 . G A 1986 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=22.83;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2019,216,0 chrII 564695 . A G 1036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;MQRankSum=-1.013;QD=19.55;ReadPosRankSum=1.602;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1069,117,0 chrII 564708 . G A 781 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.79;MQ0=0;QD=19.05;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:87:814,87,0 chrII 564727 . G C 405 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=16.87;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,23:24:48:438,48,0 chrII 565153 . A G 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=201;Dels=0.00;FS=3.098;HaplotypeScore=15.9780;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.745;QD=19.95;ReadPosRankSum=1.680;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4009,453,0 chrII 565250 . G A 5905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=257;Dels=0.00;FS=3.310;HaplotypeScore=12.5678;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.433;QD=22.98;ReadPosRankSum=1.284;SB=-3.175e+03 GT:AD:DP:GQ:PL 1/1:1,254:257:99:5905,625,0 chrII 565460 . G T 4594.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.18;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4594,487,0 chrII 565493 . C T 3869.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.6821;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.74;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3869,414,0 chrII 565566 . A G 4909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.715;DP=208;Dels=0.00;FS=9.743;HaplotypeScore=15.9360;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.348;QD=23.60;ReadPosRankSum=2.937;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:4909,543,0 chrII 565627 . G A 4110.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=25.21;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4110,435,0 chrII 565711 . T C 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=149;Dels=0.00;FS=6.349;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.008;QD=22.44;ReadPosRankSum=2.351;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3343,372,0 chrII 565735 . G A 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=171;Dels=0.00;FS=6.961;HaplotypeScore=21.7381;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=1.717;QD=21.78;ReadPosRankSum=-1.027;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3725,351,0 chrII 565750 . T C 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=190;Dels=0.00;FS=6.527;HaplotypeScore=12.2565;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.456;QD=19.76;ReadPosRankSum=2.384;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:2,184:190:99:3754,405,0 chrII 566056 . T C 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=3.953;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.866;QD=20.22;ReadPosRankSum=1.690;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3316,363,0 chrII 566061 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=19.75;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3133,333,0 chrII 566217 . G C 3475.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.1381;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=24.13;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3475,378,0 chrII 566291 . C A 4334.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.0614;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=24.35;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4334,454,0 chrII 566469 . G A 3818.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.45;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3818,429,0 chrII 566478 . G A 4185.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.74;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4185,456,0 chrII 566552 . G A 3908.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.83;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3908,417,0 chrII 566670 . T A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.30;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3378,369,0 chrII 566827 . C A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.99;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3496,375,0 chrII 566838 . A G 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=12.601;HaplotypeScore=13.1262;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-1.955;QD=21.38;ReadPosRankSum=2.421;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:2,167:171:99:3656,396,0 chrII 566995 . A G 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=155;Dels=0.00;FS=5.867;HaplotypeScore=8.9656;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.253;QD=23.33;ReadPosRankSum=2.929;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3616,384,0 chrII 567265 . C A 3019 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3052,333,0 chrII 567480 . G A 2117 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.38;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2150,228,0 chrII 567602 . C T 1804 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.27;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1837,198,0 chrII 567651 . C T 1835 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.85;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1868,195,0 chrII 567658 . T C 1670 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.65;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1703,186,0 chrII 567682 . G C 1458 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=18.94;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1491,159,0 chrII 567697 . A G 1362 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=17.24;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1395,153,0 chrII 568357 . A G 2516 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.50;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2549,276,0 chrII 568406 . T C 2612 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.24;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2645,297,0 chrII 568465 . G T 2110 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.45;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2143,234,0 chrII 568676 . G C 2511 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=12.1146;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.22;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2544,270,0 chrII 568762 . T G 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=3.334;HaplotypeScore=10.6323;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.781;QD=24.18;ReadPosRankSum=1.709;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3723,396,0 chrII 568819 . T C 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=124;Dels=0.00;FS=10.620;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.680;QD=17.43;ReadPosRankSum=2.927;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:3,120:124:99:2194,249,0 chrII 568820 . T G 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=3.424;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=0.673;QD=18.01;ReadPosRankSum=1.703;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2248,246,0 chrII 569064 . T C 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=3.882;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-1.035;QD=21.99;ReadPosRankSum=1.620;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3386,360,0 chrII 569301 . T A 3173 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.60;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3206,342,0 chrII 569302 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.168;QD=20.86;ReadPosRankSum=1.687;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3266,348,0 chrII 569460 . C T 5204.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.6205;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.98;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:5204,559,0 chrII 569856 . T G 1886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-1.037;QD=23.00;ReadPosRankSum=2.390;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1919,213,0 chrII 569872 . G C 1648 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.54;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1681,180,0 chrII 570256 . G A 2475 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.62;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2508,270,0 chrII 570264 . T C 2509 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.91;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2542,282,0 chrII 570267 . C T 2479 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=20.32;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2512,276,0 chrII 570301 . A G 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=148;Dels=0.00;FS=2.881;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-1.658;QD=21.17;ReadPosRankSum=2.399;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3166,345,0 chrII 570508 . G T 3834.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=15.9514;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.81;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3834,414,0 chrII 570929 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.34;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3596,384,0 chrII 571034 . G A 3482.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.90;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,154:159:99:3482,360,0 chrII 571050 . G A 3482.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.23;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3482,372,0 chrII 571089 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.71;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2932,315,0 chrII 571218 . G A 2340 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.08;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2373,252,0 chrII 571243 . C T 2597 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.29;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2630,282,0 chrII 571349 . A G 932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.9675;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.069;QD=11.10;ReadPosRankSum=1.686;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:99:965,111,0 chrII 571411 . A G 2623 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2656,285,0 chrII 571717 . T G 4394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=196;Dels=0.00;FS=3.332;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.502;QD=22.42;ReadPosRankSum=1.679;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4394,489,0 chrII 571870 . T G 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=155;Dels=0.00;FS=4.288;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.464;QD=21.10;ReadPosRankSum=1.687;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3271,348,0 chrII 571919 . T G 3560.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.98;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3560,387,0 chrII 572114 . T C 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=60.50;MQ0=0;MQRankSum=-1.709;QD=24.53;ReadPosRankSum=1.686;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3704,402,0 chrII 572340 . G T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.25;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3537,381,0 chrII 572944 . A G 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.956;QD=24.74;ReadPosRankSum=1.702;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2927,315,0 chrII 572996 . C T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.3948;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.31;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3331,348,0 chrII 573399 . A G 3628.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.51;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3628,396,0 chrII 573446 . G A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.04;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3681,384,0 chrII 573536 . A G 2801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=124;Dels=0.00;FS=2.774;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-1.990;QD=22.59;ReadPosRankSum=2.390;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2834,306,0 chrII 573554 . G A 2404 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.34;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2437,252,0 chrII 573669 . G T 2027 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2630;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.27;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2060,225,0 chrII 573743 . G A 1770 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.85;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1803,198,0 chrII 573792 . A T 1631 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.65;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1664,177,0 chrII 573799 . T G 1584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-1.172;QD=23.29;ReadPosRankSum=1.681;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1617,174,0 chrII 573826 . G A 1824 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.98;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1857,198,0 chrII 573868 . T C 1738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.351;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=0.514;QD=18.89;ReadPosRankSum=-0.704;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1771,173,0 chrII 573886 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=21.65;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1938,201,0 chrII 573907 . A G 1594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=86;Dels=0.00;FS=4.929;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.412;QD=18.53;ReadPosRankSum=1.691;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:1,83:86:99:1627,177,0 chrII 574371 . T C 4560.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.35;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4560,501,0 chrII 574593 . C A 6215.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.86;SB=-3.103e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:6215,658,0 chrII 574678 . C T 4474.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.4610;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.43;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4474,472,0 chrII 574683 . A G 4233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=210;Dels=0.00;FS=5.996;HaplotypeScore=7.4130;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=1.219;QD=20.16;ReadPosRankSum=2.956;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:3,204:210:99:4233,456,0 chrII 574755 . G A 5283.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.07;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5283,553,0 chrII 574962 . G T 4351.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.9003;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=24.31;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4351,460,0 chrII 575070 . T C 3095 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3128,342,0 chrII 575422 . G A 4061.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.332;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.0388;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=-0.945;QD=20.41;ReadPosRankSum=-1.557;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4061,414,0 chrII 575423 . G A 4128.01 SnpCluster AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.8822;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=20.64;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4128,441,0 chrII 575427 . T A 4123.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.6722;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-0.979;QD=19.92;ReadPosRankSum=1.715;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4123,444,0 chrII 575460 . G A 4704.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=26.8414;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=19.85;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:4704,507,0 chrII 575523 . G A 6103.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=18.4226;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.84;SB=-3.196e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:6103,658,0 chrII 575685 . C G 4420.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=16.7330;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.82;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4420,489,0 chrII 575784 . G A 4158.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=17.7748;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.32;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4158,453,0 chrII 575877 . G C 2525 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.6374;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.15;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2558,276,0 chrII 575949 . T C 1900 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.35;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1933,210,0 chrII 576022 . G A 1398 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=57.4220;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=14.72;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1431,159,0 chrII 576057 . A G 954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=90;Dels=0.00;FS=2.608;HaplotypeScore=7.8650;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.652;QD=10.60;ReadPosRankSum=2.742;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:3,87:90:99:987,108,0 chrII 576135 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.98;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1507,162,0 chrII 576166 . C T 1570 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.79;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1603,168,0 chrII 576434 . A G 1510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.057;QD=19.61;ReadPosRankSum=1.642;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1543,174,0 chrII 576971 . G A 4445.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.79;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4445,471,0 chrII 576997 . T C 5179.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=4.2752;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.52;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5179,559,0 chrII 577418 . T C 3505.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3505,390,0 chrII 578147 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.1505;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.49;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3853,405,0 chrII 578174 . A C 3998.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.46;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3998,432,0 chrII 578954 . A G 1155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-0.645;QD=22.65;ReadPosRankSum=1.664;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1188,129,0 chrII 579032 . A T 1404 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-0.507;QD=16.92;ReadPosRankSum=1.690;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1437,159,0 chrII 579038 . A C 1707 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=20.57;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1740,186,0 chrII 579042 . A G 1572 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=19.41;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1605,171,0 chrII 579131 . A G 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=8.195;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.525;QD=26.44;ReadPosRankSum=1.470;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1778,189,0 chrII 579408 . G T 3588.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.43;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3588,387,0 chrII 579501 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3346;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.57;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3276,363,0 chrII 579644 . A G 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=140;Dels=0.00;FS=2.951;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-0.722;QD=21.80;ReadPosRankSum=2.271;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:3085,327,0 chrII 579647 . T C 2924 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.19;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2957,324,0 chrII 579919 . C G 2831 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=19.94;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2864,312,0 chrII 579920 . T C 2793 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=19.81;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2826,312,0 chrII 579936 . A G 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=1.208;QD=19.25;ReadPosRankSum=1.687;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2959,327,0 chrII 579957 . G A 3003 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.43;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3036,327,0 chrII 580057 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4362;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.38;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3437,372,0 chrII 580260 . G T 4599.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.1092;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.22;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4599,504,0 chrII 580307 . C T 5298.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.7052;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.74;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5298,565,0 chrII 580371 . C T 6112.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=17.5659;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.67;SB=-3.471e+03 GT:AD:DP:GQ:PL 1/1:0,282:282:99:6112,643,0 chrII 580507 . T C 6782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=278;Dels=0.00;FS=3.026;HaplotypeScore=18.9671;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-1.214;QD=24.40;ReadPosRankSum=2.432;SB=-3.676e+03 GT:AD:DP:GQ:PL 1/1:2,276:278:99:6782,727,0 chrII 580560 . A C 5878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.468;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=12.3640;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=1.334;QD=21.22;ReadPosRankSum=2.396;SB=-3.296e+03 GT:AD:DP:GQ:PL 1/1:2,273:277:99:5878,636,0 chrII 580575 . T C 6350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=302;Dels=0.00;FS=2.919;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.518;QD=21.03;ReadPosRankSum=2.433;SB=-3.590e+03 GT:AD:DP:GQ:PL 1/1:2,299:302:99:6350,682,0 chrII 580722 . A T 6897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=302;Dels=0.00;FS=3.387;HaplotypeScore=9.8187;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.387;QD=22.84;ReadPosRankSum=1.709;SB=-3.493e+03 GT:AD:DP:GQ:PL 1/1:1,300:301:99:6897,742,0 chrII 580746 . C T 6868.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=10.6309;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.44;SB=-4.176e+03 GT:AD:DP:GQ:PL 1/1:0,304:306:99:6868,712,0 chrII 580809 . A T 7927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=11.4544;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-1.654;QD=22.46;ReadPosRankSum=1.722;SB=-4.418e+03 GT:AD:DP:GQ:PL 1/1:1,352:353:99:7927,853,0 chrII 580868 . T C 6947.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=24.7580;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.98;SB=-3.334e+03 GT:AD:DP:GQ:PL 1/1:0,314:316:99:6947,742,0 chrII 580923 . A T 6269.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=292;Dels=0.00;FS=2.899;HaplotypeScore=18.9171;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.971;QD=21.47;ReadPosRankSum=2.399;SB=-3.230e+03 GT:AD:DP:GQ:PL 1/1:2,290:292:99:6269,673,0 chrII 581091 . A C 5073.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.06;SB=-2.809e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5073,570,0 chrII 581181 . C A 5713.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.5823;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.00;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5713,624,0 chrII 581216 . C T 5226.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=20.5057;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.92;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,224:228:99:5226,579,0 chrII 581322 . A G 4045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.3476;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.584;QD=23.11;ReadPosRankSum=1.712;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4045,444,0 chrII 581355 . C T 4203.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.3966;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.22;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4203,444,0 chrII 581460 . A G 2247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;MQRankSum=-1.470;QD=19.04;ReadPosRankSum=2.408;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2280,249,0 chrII 581465 . A G 2416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;MQRankSum=-0.859;QD=20.30;ReadPosRankSum=1.645;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2449,264,0 chrII 581484 . G C 2141 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=18.62;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2174,252,0 chrII 581510 . C T 1789 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=17.04;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1822,192,0 chrII 581511 . C T 1688 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=15.92;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1721,189,0 chrII 581615 . A G 2237 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=20.91;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2270,249,0 chrII 581695 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=19.06;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2568,282,0 chrII 581822 . G A 6342.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=12.7141;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.87;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,253:255:99:6342,682,0 chrII 582285 . T C 4276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=3.201;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.658;QD=22.99;ReadPosRankSum=1.713;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4276,477,0 chrII 582334 . T G 4499.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.56;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4499,480,0 chrII 582375 . T A 5323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=214;Dels=0.00;FS=2.980;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.110;QD=24.87;ReadPosRankSum=2.380;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:5323,565,0 chrII 582406 . A G 5164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=220;Dels=0.00;FS=7.201;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.198;QD=23.47;ReadPosRankSum=2.359;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:2,215:220:99:5164,550,0 chrII 582433 . G A 4891.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.40;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4891,511,0 chrII 582458 . T C 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=201;Dels=0.00;FS=2.940;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-0.352;QD=18.64;ReadPosRankSum=2.413;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:3746,396,0 chrII 582470 . A T 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=205;Dels=0.00;FS=6.986;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-0.976;QD=18.17;ReadPosRankSum=2.402;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:3724,396,0 chrII 582806 . A G 5556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.961;DP=250;Dels=0.00;FS=15.164;HaplotypeScore=20.2498;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.714;QD=22.22;ReadPosRankSum=4.180;SB=-2.991e+03 GT:AD:DP:GQ:PL 1/1:6,242:250:99:5556,624,0 chrII 583100 . T C 4650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=207;Dels=0.00;FS=3.271;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.715;QD=22.46;ReadPosRankSum=1.682;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4650,504,0 chrII 583262 . C T 2891 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.90;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2924,303,0 chrII 583267 . G A 2778 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.21;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2811,297,0 chrII 583514 . T C 1196 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=19.93;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1229,132,0 chrII 583576 . T A 1324 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.04;MQ0=0;QD=15.05;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1357,144,0 chrII 583825 . T G 6571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=20.9272;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.176;QD=24.70;ReadPosRankSum=2.958;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:3,259:266:99:6571,709,0 chrII 583984 . T C 5748.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.6010;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.18;SB=-3.187e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5748,622,0 chrII 584238 . A G 4733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=203;Dels=0.00;FS=3.032;HaplotypeScore=16.3840;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.833;QD=23.32;ReadPosRankSum=2.425;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:4733,508,0 chrII 584397 . C T 5798.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=10.3071;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.47;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5798,610,0 chrII 584634 . C T 3177 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.19;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3210,333,0 chrII 584764 . G A 2647 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.02;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2680,300,0 chrII 585012 . C T 3750.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.9378;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.15;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3750,405,0 chrII 585092 . G A 3008 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.4423;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.64;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3041,336,0 chrII 585569 . C T 4006.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4006,441,0 chrII 585655 . T C 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=6.575;HaplotypeScore=7.5307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.276;QD=21.75;ReadPosRankSum=2.414;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3035,330,0 chrII 585769 . T C 3734.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.63;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3734,411,0 chrII 585814 . C T 3582.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.83;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3582,393,0 chrII 586121 . A G 2445 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.1102;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.37;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2478,264,0 chrII 586133 . G A 2532 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.10;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2565,279,0 chrII 586154 . T C 2120 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.58;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2153,228,0 chrII 586221 . C T 1838 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1871,198,0 chrII 586315 . G C 1184 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1207;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.73;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1217,135,0 chrII 586488 . A T 1664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.476;QD=20.80;ReadPosRankSum=1.602;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1697,186,0 chrII 586751 . A C 4565.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=26.24;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4565,483,0 chrII 586853 . A G 4127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=171;Dels=0.00;FS=10.319;HaplotypeScore=11.8624;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.300;QD=24.13;ReadPosRankSum=2.924;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:4127,441,0 chrII 586961 . C T 3849.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.84;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3849,420,0 chrII 586964 . A T 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=0.255;QD=19.79;ReadPosRankSum=1.662;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3898,429,0 chrII 587130 . G T 4063.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.90;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4063,427,0 chrII 587405 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.43;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3196,342,0 chrII 587432 . A T 2952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.472;QD=22.36;ReadPosRankSum=1.653;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2985,327,0 chrII 587830 . G C 2391 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.16;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2424,267,0 chrII 588089 . A G 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=4.440;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-1.204;QD=24.67;ReadPosRankSum=1.711;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:4071,453,0 chrII 588182 . T C 3047 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.74;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3080,339,0 chrII 588326 . C T 3763.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=20.02;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:3763,402,0 chrII 588329 . G C 3474.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.6711;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=18.98;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,179:183:99:3474,390,0 chrII 588368 . A C 3362.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.88;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3362,375,0 chrII 589145 . C T 4144.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=19.27;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4144,436,0 chrII 589164 . T C 4091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=3.376;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.700;QD=20.35;ReadPosRankSum=1.662;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:1,197:201:99:4091,459,0 chrII 589394 . G A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.98;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3693,393,0 chrII 589837 . C T 3692.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.78;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3692,396,0 chrII 589871 . A G 2621 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.86;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2654,297,0 chrII 589872 . G T 2730 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.84;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2763,300,0 chrII 589895 . T C 2537 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=19.67;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2570,279,0 chrII 589941 . G A 2480 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=18.79;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2513,270,0 chrII 590112 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=152;Dels=0.00;FS=3.529;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.677;QD=22.95;ReadPosRankSum=1.709;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3488,384,0 chrII 590242 . G T 2865 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2898,303,0 chrII 590654 . A G 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=162;Dels=0.00;FS=5.937;HaplotypeScore=8.9564;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.025;QD=23.35;ReadPosRankSum=2.868;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:3,157:162:99:3782,411,0 chrII 590742 . C T 3886.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.7598;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3886,408,0 chrII 590853 . G A 4213.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4213,450,0 chrII 590898 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4179,442,0 chrII 590982 . T C 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=155;Dels=0.00;FS=7.136;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.795;QD=22.91;ReadPosRankSum=2.322;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3551,390,0 chrII 591250 . T C 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=3.194;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.331;QD=23.02;ReadPosRankSum=1.675;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2865,306,0 chrII 591285 . T C 1817 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.42;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1850,204,0 chrII 591323 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.63;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2137,225,0 chrII 591378 . C A 2261 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=17.13;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2294,249,0 chrII 591631 . T A 520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.200;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;MQRankSum=0.267;QD=20.00;ReadPosRankSum=1.333;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:60:553,60,0 chrII 591710 . A G 2097 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=38.90;MQ0=0;QD=24.10;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:2130,231,0 chrII 592177 . A G 3133 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.575;DP=317;Dels=0.00;FS=122.812;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=19.66;MQ0=146;MQRankSum=3.501;QD=9.88;ReadPosRankSum=3.331;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:76,240:317:99:3166,215,0 chrII 592447 . G A 3382.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=21.68;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3382,360,0 chrII 592495 . T C 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=152;Dels=0.00;FS=4.155;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.526;QD=21.66;ReadPosRankSum=1.709;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3292,354,0 chrII 592600 . G A 4378.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.16;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4378,483,0 chrII 592634 . T A 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.099;QD=22.03;ReadPosRankSum=1.688;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3459,378,0 chrII 592643 . G C 3208 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.82;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:3241,345,0 chrII 592744 . T A 3087 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=136.1451;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=19.92;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3120,333,0 chrII 592815 . A T 4353.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.98;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4353,463,0 chrII 592905 . C T 2455 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.12;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2488,270,0 chrII 592938 . T C 1563 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=16.28;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1596,168,0 chrII 593091 . T C 1658 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.4491;MLEAC=2;MLEAF=1.00;MQ=61.22;MQ0=0;QD=17.09;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1691,192,0 chrII 593396 . T C 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.232;QD=25.26;ReadPosRankSum=1.696;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2483,267,0 chrII 593719 . C T 4072.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0221;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.98;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4072,427,0 chrII 593800 . G A 2006 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=12.3817;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=18.92;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2039,222,0 chrII 593968 . A G 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.097;QD=20.65;ReadPosRankSum=1.646;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3324,363,0 chrII 594007 . C T 3904.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.66;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3904,414,0 chrII 594022 . C G 3883.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.5227;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=19.81;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:3883,417,0 chrII 594044 . G A 4100.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.71;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4100,450,0 chrII 594148 . C T 3549.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.65;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3549,381,0 chrII 594298 . A T 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=199;Dels=0.00;FS=7.626;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=1.191;QD=20.90;ReadPosRankSum=2.413;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4159,450,0 chrII 594303 . T A 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.2908;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.913;QD=21.20;ReadPosRankSum=1.713;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3964,426,0 chrII 594492 . A G 5501.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=16.8717;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.45;SB=-3.169e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5501,592,0 chrII 594781 . T C 2687 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.85;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2720,297,0 chrII 594784 . T G 2730 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.94;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2763,300,0 chrII 595222 . C T 3361.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.01;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3361,369,0 chrII 595246 . C T 3105 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.7422;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.90;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3138,336,0 chrII 595497 . A G 2206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=98;Dels=0.00;FS=9.722;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=1.464;QD=22.51;ReadPosRankSum=2.928;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:3,95:98:99:2239,240,0 chrII 595508 . A G 1934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=7.577;HaplotypeScore=82.6844;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=0.298;QD=20.36;ReadPosRankSum=2.294;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1967,210,0 chrII 595530 . A G 1815 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=17.79;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1848,204,0 chrII 595808 . C T 1032 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=16.92;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1065,114,0 chrII 595927 . T C 1259 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.64;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1292,138,0 chrII 596041 . T C 894 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.79;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:927,102,0 chrII 596047 . G A 1123 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.96;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1156,120,0 chrII 596219 . C T 1811 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.52;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1844,198,0 chrII 596654 . G A 5592.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.59;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5592,612,0 chrII 596681 . T A 4442.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=21.67;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4442,483,0 chrII 596684 . C T 4336.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.85;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4336,480,0 chrII 597100 . G A 470 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.43;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:54:503,54,0 chrII 597806 . C T 2608 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.93;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2641,279,0 chrII 597962 . G T 2436 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.88;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2469,264,0 chrII 598025 . T G 2598 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.51;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2631,285,0 chrII 598133 . C T 2014 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.34;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2047,216,0 chrII 598137 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=21.41;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2174,228,0 chrII 598254 . T G 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=140;Dels=0.00;FS=2.639;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.840;QD=22.15;ReadPosRankSum=2.397;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3134,339,0 chrII 598272 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5806;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.11;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3018,327,0 chrII 598753 . G T 3085 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.85;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3118,324,0 chrII 598928 . C T 1758 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1791,192,0 chrII 599098 . T C 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.8201;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.747;QD=24.85;ReadPosRankSum=1.700;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2767,303,0 chrII 599150 . A T 2831 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.46;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2864,306,0 chrII 599573 . T C 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=178;Dels=0.00;FS=7.327;HaplotypeScore=10.4194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.375;QD=22.29;ReadPosRankSum=2.422;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:3967,438,0 chrII 599687 . C T 4542.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4542,486,0 chrII 599732 . A G 3568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=156;Dels=0.00;FS=2.972;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.699;QD=22.87;ReadPosRankSum=2.401;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3568,384,0 chrII 599869 . A G 3107 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3140,333,0 chrII 599903 . T C 2720 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2753,303,0 chrII 599979 . G T 2481 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2514,270,0 chrII 600505 . T A 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.584;QD=24.56;ReadPosRankSum=1.683;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1752,186,0 chrII 600570 . C T 1629 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.4648;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.96;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1662,177,0 chrII 600991 . T C 3778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.315;QD=24.53;ReadPosRankSum=1.687;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3778,408,0 chrII 601074 . G A 2963 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=19.24;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2996,321,0 chrII 601087 . A G 2676 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=16.32;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2709,303,0 chrII 601097 . T C 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.738;DP=173;Dels=0.00;FS=9.535;HaplotypeScore=1.6584;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;MQRankSum=-2.606;QD=15.49;ReadPosRankSum=4.651;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:8,165:173:99:2712,288,0 chrII 601104 . G A 2569 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.2269;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=15.29;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:2602,267,0 chrII 601142 . A G 3487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=190;Dels=0.00;FS=3.493;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=-1.112;QD=18.35;ReadPosRankSum=1.696;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3487,369,0 chrII 601251 . G A 4555.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.85;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4555,492,0 chrII 601560 . A G 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.247;QD=23.59;ReadPosRankSum=1.674;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2840,306,0 chrII 601570 . G T 2804 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.98;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2837,303,0 chrII 602047 . G A 2480 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.57;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2513,264,0 chrII 602171 . C T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=24.44;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3861,403,0 chrII 602182 . T C 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.560;DP=170;Dels=0.00;FS=8.021;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.249;QD=20.36;ReadPosRankSum=3.800;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:5,165:170:99:3461,387,0 chrII 602361 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.6583;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.19;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3139,336,0 chrII 602682 . T C 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=2.978;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=-1.093;QD=18.52;ReadPosRankSum=2.419;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3052,330,0 chrII 602687 . C T 2972 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=17.18;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3005,327,0 chrII 602697 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=17.13;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3133,333,0 chrII 602847 . G C 4404.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.8182;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=23.18;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,185:190:99:4404,466,0 chrII 602855 . G A 4290.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.34;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4290,471,0 chrII 603595 . A T 3449.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=126.7893;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.83;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3449,363,0 chrII 603825 . C T 4459.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.86;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4459,463,0 chrII 603837 . A T 3832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.589;QD=19.45;ReadPosRankSum=1.714;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3832,426,0 chrII 603865 . A G 3612.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.6543;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=18.43;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:3612,405,0 chrII 603916 . T C 3957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.7721;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-1.478;QD=20.72;ReadPosRankSum=1.714;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3957,435,0 chrII 603980 . T C 4531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.5374;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=0.615;QD=21.07;ReadPosRankSum=1.716;SB=-2.891e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4531,484,0 chrII 603992 . A G 3951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.6645;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=0.686;QD=18.90;ReadPosRankSum=1.715;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:1,202:209:99:3951,435,0 chrII 604017 . C T 3917.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.0588;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.56;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:3917,420,0 chrII 604051 . A T 4930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=236;Dels=0.00;FS=3.643;HaplotypeScore=13.5193;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-1.160;QD=20.89;ReadPosRankSum=1.703;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:4930,520,0 chrII 604155 . T C 5261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=222;Dels=0.00;FS=3.171;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.362;QD=23.70;ReadPosRankSum=1.716;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:1,219:222:99:5261,576,0 chrII 604420 . T C 3286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.314;HaplotypeScore=7.8641;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.562;QD=21.76;ReadPosRankSum=1.709;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,147:151:99:3286,366,0 chrII 604449 . A G 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.682;QD=20.11;ReadPosRankSum=1.707;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2808,303,0 chrII 605039 . G A 2325 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.02;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2358,249,0 chrII 605067 . G A 2920 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.42;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2953,318,0 chrII 605709 . C A 2225 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=24.18;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,88:92:99:2258,246,0 chrII 605773 . C T 2418 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=19.66;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2451,270,0 chrII 605775 . T C 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=0.070;QD=18.90;ReadPosRankSum=1.704;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2377,264,0 chrII 605930 . T C 5456.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=22.73;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5456,594,0 chrII 605935 . A T 5455.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=217.3413;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=22.27;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5455,583,0 chrII 605969 . A C 4195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=238;Dels=0.00;FS=16.634;HaplotypeScore=12.1404;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.223;QD=17.63;ReadPosRankSum=2.927;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:3,231:238:99:4195,459,0 chrII 605997 . C T 3502.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.2006;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=16.92;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3502,369,0 chrII 606236 . A G 5228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=219;Dels=0.00;FS=2.958;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=1.097;QD=23.87;ReadPosRankSum=2.393;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:2,214:219:99:5228,564,0 chrII 606458 . C T 3702.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.88;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3702,393,0 chrII 606494 . T A 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=144;Dels=0.00;FS=10.368;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.050;QD=22.92;ReadPosRankSum=2.415;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3300,354,0 chrII 606590 . C G 3855.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3855,417,0 chrII 606658 . T C 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.372;QD=23.75;ReadPosRankSum=2.424;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4631,504,0 chrII 607035 . T C 1342 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.45;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1375,147,0 chrII 607269 . T C 753 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=22.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:84:786,84,0 chrII 607487 . G A 2676 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=26.50;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2709,279,0 chrII 607539 . A C 2539 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=21.52;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2572,282,0 chrII 607542 . A T 2480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=3.048;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.637;QD=21.02;ReadPosRankSum=0.577;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2513,276,0 chrII 607558 . T C 2329 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.56;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2362,255,0 chrII 607602 . C T 2961 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.56;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2994,315,0 chrII 607669 . T A 3667.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.32;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3667,402,0 chrII 607705 . A G 3059 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=20.12;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3092,351,0 chrII 607867 . C A 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=8.485;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.723;QD=20.09;ReadPosRankSum=-1.105;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2604,279,0 chrII 608320 . A G 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=180;Dels=0.00;FS=6.025;HaplotypeScore=11.4592;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.107;QD=23.04;ReadPosRankSum=2.815;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:3,176:180:99:4148,456,0 chrII 608350 . T C 4540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=204;Dels=0.00;FS=6.943;HaplotypeScore=12.8324;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.222;QD=22.25;ReadPosRankSum=2.401;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4540,507,0 chrII 608432 . A C 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=180;Dels=0.00;FS=3.004;HaplotypeScore=12.6466;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.528;QD=21.96;ReadPosRankSum=2.395;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3952,435,0 chrII 609073 . A G 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=128;Dels=0.00;FS=3.928;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.155;QD=23.57;ReadPosRankSum=1.705;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:3050,327,0 chrII 609102 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=151;Dels=0.00;FS=9.369;HaplotypeScore=9.6376;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.883;QD=24.06;ReadPosRankSum=2.384;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3633,396,0 chrII 609255 . A T 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=176;Dels=0.00;FS=4.260;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.279;QD=22.45;ReadPosRankSum=1.653;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3952,417,0 chrII 609397 . A G 5323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=239;Dels=0.00;FS=3.315;HaplotypeScore=20.5150;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.763;QD=22.27;ReadPosRankSum=1.703;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:1,236:239:99:5323,582,0 chrII 609547 . C T 5978.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=16.8647;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.44;SB=-2.953e+03 GT:AD:DP:GQ:PL 1/1:0,253:255:99:5978,649,0 chrII 609798 . G T 3049 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.19;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3082,324,0 chrII 610045 . A G 3367.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3367,375,0 chrII 610094 . C T 2864 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.8807;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.55;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2897,312,0 chrII 610295 . A G 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=3.305;HaplotypeScore=11.1053;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.049;QD=22.88;ReadPosRankSum=1.707;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3190,348,0 chrII 610376 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.27;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2828,309,0 chrII 610437 . A T 3597.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.7707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3597,378,0 chrII 610492 . T G 3957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.296;QD=24.28;ReadPosRankSum=1.689;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:2,158:163:99:3957,432,0 chrII 610603 . G T 6001.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=15.4305;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.70;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:6001,643,0 chrII 610797 . T C 4007.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=21.2397;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.08;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4007,435,0 chrII 611052 . G T 3999.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.69;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3999,420,0 chrII 611232 . A C 4410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.2518;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.381;QD=24.23;ReadPosRankSum=1.713;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4410,474,0 chrII 611711 . T C 4965.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.34;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4965,546,0 chrII 611905 . T C 3659.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.7455;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.16;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,153:158:99:3659,414,0 chrII 612026 . G C 1951 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.68;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1984,216,0 chrII 612275 . A G 2523 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.94;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2556,282,0 chrII 612287 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.39;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2700,279,0 chrII 612323 . G A 2842 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.86;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2875,309,0 chrII 612575 . A G 5645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.394;DP=260;Dels=0.00;FS=9.131;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.801;QD=21.71;ReadPosRankSum=3.374;SB=-3.267e+03 GT:AD:DP:GQ:PL 1/1:4,256:260:99:5645,636,0 chrII 612968 . G A 7367.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=20.2616;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.46;SB=-3.343e+03 GT:AD:DP:GQ:PL 1/1:0,314:314:99:7367,796,0 chrII 613145 . G A 7813.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=18.5852;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.04;SB=-4.352e+03 GT:AD:DP:GQ:PL 1/1:0,325:325:99:7813,832,0 chrII 613202 . G A 7986.01 PASS AC=2;AF=1.00;AN=2;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=16.9375;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.77;SB=-3.974e+03 GT:AD:DP:GQ:PL 1/1:0,335:336:99:7986,868,0 chrII 613388 . C T 9587.01 filter AC=2;AF=1.00;AN=2;DP=410;Dels=0.00;FS=0.000;HaplotypeScore=17.7454;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.38;SB=-4.296e+03 GT:AD:DP:GQ:PL 1/1:0,410:410:99:9587,1045,0 chrII 613415 . A G 9062.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.685;DP=418;Dels=0.00;FS=19.557;HaplotypeScore=35.5349;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.571;QD=21.68;ReadPosRankSum=3.824;SB=-4.281e+03 GT:AD:DP:GQ:PL 1/1:5,408:418:99:9062,999,0 chrII 613517 . A G 10816.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=465;Dels=0.00;FS=3.019;HaplotypeScore=16.4274;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-0.364;QD=23.26;ReadPosRankSum=2.402;SB=-6.252e+03 GT:AD:DP:GQ:PL 1/1:2,461:465:99:10816,1156,0 chrII 614131 . A G 3150 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.05;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:3183,339,0 chrII 614308 . G T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.6610;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.43;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3866,417,0 chrII 614359 . T C 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=174;Dels=0.00;FS=2.938;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.628;QD=23.29;ReadPosRankSum=2.393;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:4053,441,0 chrII 614485 . G C 3858.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.8128;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=19.89;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3858,423,0 chrII 614507 . C T 4255.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=21.60;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4255,450,0 chrII 614520 . A G 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=188;Dels=0.00;FS=2.963;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.803;QD=21.20;ReadPosRankSum=2.423;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:3985,453,0 chrII 614550 . G A 4024.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.64;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4024,426,0 chrII 614683 . T C 5384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=14.3414;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-1.686;QD=23.31;ReadPosRankSum=1.702;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:1,227:231:99:5384,591,0 chrII 614824 . A G 3940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=15.0477;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=2.270;QD=20.41;ReadPosRankSum=2.424;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:3940,429,0 chrII 614924 . G A 4059.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.74;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4059,432,0 chrII 615097 . T A 4352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.6590;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.224;QD=22.79;ReadPosRankSum=1.696;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4352,480,0 chrII 615157 . A G 4388.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.11;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4388,471,0 chrII 615204 . C A 4581.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.25;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4581,501,0 chrII 615346 . G A 6081.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=12.4771;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=23.39;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:6081,643,0 chrII 615549 . G A 5850.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=13.3227;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.67;SB=-3.022e+03 GT:AD:DP:GQ:PL 1/1:0,281:283:99:5850,639,0 chrII 615566 . T C 4654.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=18.69;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:4654,528,0 chrII 615644 . T C 5936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=304;Dels=0.00;FS=5.609;HaplotypeScore=15.2906;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-1.663;QD=19.53;ReadPosRankSum=1.698;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:1,303:304:99:5936,657,0 chrII 615654 . G C 6273.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=10.6832;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.43;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,304:307:99:6273,661,0 chrII 615698 . G A 4981.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=24.2603;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=19.23;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:4981,535,0 chrII 615775 . C T 3449.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=22.0715;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.41;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3449,363,0 chrII 615887 . A G 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=1.241;QD=17.95;ReadPosRankSum=1.708;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2564,285,0 chrII 615970 . C G 4418.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.0373;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.77;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4418,498,0 chrII 616310 . G A 4344.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.9129;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.99;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4344,477,0 chrII 616376 . A G 5359.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=21.5690;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.20;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5359,585,0 chrII 616532 . C T 5416.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.3470;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.18;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5416,568,0 chrII 616646 . C T 6612.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=10.4318;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.97;SB=-3.043e+03 GT:AD:DP:GQ:PL 1/1:0,300:301:99:6612,700,0 chrII 616805 . A C 4847.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.54;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4847,543,0 chrII 616838 . G A 4864.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.8868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.27;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4864,511,0 chrII 617504 . A G 3080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=140;Dels=0.00;FS=6.836;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.746;QD=22.00;ReadPosRankSum=2.292;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3113,345,0 chrII 617606 . A C 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.257;QD=22.58;ReadPosRankSum=1.698;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2336,252,0 chrII 617783 . A T 1793 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.99;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1826,198,0 chrII 617810 . T C 1758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.652;QD=22.83;ReadPosRankSum=1.597;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1791,192,0 chrII 618167 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.4814;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.135;QD=24.72;ReadPosRankSum=2.398;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3560,387,0 chrII 618353 . C T 4859.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.4866;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.36;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4859,519,0 chrII 618506 . A G 4363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=227;Dels=0.00;FS=2.699;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.173;QD=19.22;ReadPosRankSum=2.428;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:2,223:227:99:4363,477,0 chrII 618597 . T C 4398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.096;DP=207;Dels=0.00;FS=12.342;HaplotypeScore=16.6558;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.351;QD=21.25;ReadPosRankSum=2.935;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:4,202:207:99:4398,464,0 chrII 618736 . T G 5167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.5752;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=1.029;QD=24.37;ReadPosRankSum=1.699;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:5167,558,0 chrII 618844 . A T 3661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=178;Dels=0.00;FS=5.819;HaplotypeScore=9.6661;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-1.028;QD=20.57;ReadPosRankSum=2.893;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:3661,387,0 chrII 618892 . G A 3137 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.8457;MLEAC=2;MLEAF=1.00;MQ=42.87;MQ0=0;QD=15.92;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3170,348,0 chrII 618901 . G A 3018 SnpCluster AC=2;AF=1.00;AN=2;DP=196;Dels=0.01;FS=0.000;HaplotypeScore=17.6727;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=15.40;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3051,321,0 chrII 618907 . A G 2897 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;MQRankSum=-1.326;QD=14.78;ReadPosRankSum=1.644;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:2930,318,0 chrII 618908 . T C 2858 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=196;Dels=0.00;FS=10.819;HaplotypeScore=2.3983;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;MQRankSum=-1.395;QD=14.58;ReadPosRankSum=2.954;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:2891,309,0 chrII 618941 . T G 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=206;Dels=0.00;FS=6.943;HaplotypeScore=13.8772;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;MQRankSum=-1.306;QD=15.58;ReadPosRankSum=2.425;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:2,202:206:99:3243,360,0 chrII 619028 . C A 3630.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.41;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3630,399,0 chrII 619256 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.78;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3400,357,0 chrII 619502 . T C 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.437;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=0.710;QD=21.62;ReadPosRankSum=1.583;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3038,333,0 chrII 619507 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=22.68;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2982,312,0 chrII 619593 . T G 3650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=151;Dels=0.00;FS=3.728;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.365;QD=24.17;ReadPosRankSum=1.663;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3650,393,0 chrII 619746 . A G 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=3.965;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.035;QD=20.56;ReadPosRankSum=1.685;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3076,333,0 chrII 619747 . A G 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=3.949;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=1.203;QD=20.84;ReadPosRankSum=1.708;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,144:148:99:3118,333,0 chrII 620102 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.49;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3527,369,0 chrII 620302 . G A 2720 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.71;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2753,300,0 chrII 620443 . G T 1497 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.15;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1530,162,0 chrII 620480 . C T 1736 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.43;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1769,195,0 chrII 620513 . G A 1817 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1850,204,0 chrII 620680 . A G 2785 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.01;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2818,309,0 chrII 621057 . A G 3851.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.3071;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.20;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3851,414,0 chrII 621285 . G A 4673.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4673,513,0 chrII 621546 . C T 5192.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.2552;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.97;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5192,556,0 chrII 621963 . C T 3051 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.2229;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.76;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,141:147:99:3084,333,0 chrII 622305 . T A 2197 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.88;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2230,240,0 chrII 622655 . G A 1774 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1807,189,0 chrII 622789 . G T 867 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.43;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:96:900,96,0 chrII 622849 . A T 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=78;Dels=0.00;FS=5.992;HaplotypeScore=14.1798;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.197;QD=22.71;ReadPosRankSum=1.961;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:3,75:78:99:1804,179,0 chrII 622888 . C A 2037 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.84;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2070,228,0 chrII 622971 . T C 2233 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.6761;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.07;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2266,246,0 chrII 622981 . A C 2212 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.87;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2245,246,0 chrII 623027 . T C 2264 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=19.03;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2297,246,0 chrII 623272 . C A 3669.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.7831;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=25.30;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3669,402,0 chrII 623413 . A T 3372.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=21.90;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3372,357,0 chrII 623418 . A T 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=0.342;QD=20.41;ReadPosRankSum=1.710;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3237,357,0 chrII 623427 . A G 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=148;Dels=0.00;FS=2.881;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-0.547;QD=19.84;ReadPosRankSum=2.382;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:2970,321,0 chrII 623785 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.11;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3979,435,0 chrII 623818 . A G 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.960;QD=23.06;ReadPosRankSum=1.688;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3667,399,0 chrII 623968 . G T 4576.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.5156;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.71;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4576,498,0 chrII 624009 . C T 4978.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=25.40;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4978,523,0 chrII 624052 . A T 4644.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.4639;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.54;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4644,504,0 chrII 624076 . T C 4631.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.3790;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.16;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4631,501,0 chrII 624215 . A G 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.387;QD=22.27;ReadPosRankSum=1.695;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4209,456,0 chrII 624273 . A G 4026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.651;DP=179;Dels=0.00;FS=7.461;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.285;QD=22.49;ReadPosRankSum=3.785;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:5,171:179:99:4026,447,0 chrII 624493 . C T 2454 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.93;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2487,264,0 chrII 624540 . A T 2154 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.54;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2187,237,0 chrII 624583 . T C 1783 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=17.65;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1816,201,0 chrII 624736 . C T 1835 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.73;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1868,207,0 chrII 624740 . A G 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=93;Dels=0.00;FS=3.039;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.736;QD=19.54;ReadPosRankSum=2.343;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:2,90:93:99:1850,204,0 chrII 624762 . T C 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=3.050;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.475;QD=19.80;ReadPosRankSum=2.401;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2033,222,0 chrII 624798 . A G 1771 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=17.71;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1804,195,0 chrII 624805 . G A 1671 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=17.59;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1704,177,0 chrII 624836 . C A 1860 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.18;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1893,198,0 chrII 625077 . T C 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=3.076;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.215;QD=21.50;ReadPosRankSum=1.706;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2936,321,0 chrII 625150 . C G 4666.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.60;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4666,493,0 chrII 625203 . C A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.1530;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=18.92;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3348,363,0 chrII 625210 . G A 2604 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=16.69;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2637,279,0 chrII 625234 . T G 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=3.595;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.014;QD=17.61;ReadPosRankSum=1.706;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2410,264,0 chrII 625298 . A G 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=127;Dels=0.00;FS=3.045;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-1.326;QD=24.94;ReadPosRankSum=2.411;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:3201,339,0 chrII 625628 . A C 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.5450;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.602;QD=24.47;ReadPosRankSum=0.477;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3402,369,0 chrII 625653 . C T 3671.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.2112;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.80;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3671,390,0 chrII 625690 . C A 3018 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.52;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3051,321,0 chrII 625721 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.52;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2968,321,0 chrII 625733 . G C 3138 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.25;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3171,348,0 chrII 625761 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=185;Dels=0.00;FS=2.934;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-0.394;QD=20.46;ReadPosRankSum=2.303;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:3786,414,0 chrII 625843 . T C 4647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.2904;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.026;QD=22.78;ReadPosRankSum=1.664;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4647,504,0 chrII 625876 . T C 5160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=222;Dels=0.00;FS=5.407;HaplotypeScore=8.3026;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.344;QD=23.24;ReadPosRankSum=2.914;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:3,219:222:99:5160,573,0 chrII 626092 . A G 6428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=269;Dels=0.00;FS=9.377;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.427;QD=23.90;ReadPosRankSum=2.951;SB=-3.424e+03 GT:AD:DP:GQ:PL 1/1:3,265:269:99:6428,691,0 chrII 626278 . C T 4255.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.60;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4255,474,0 chrII 626455 . G A 4870.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=23.64;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4870,502,0 chrII 626470 . C T 4015.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.8431;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.56;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4015,424,0 chrII 626608 . T C 5004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=216;Dels=0.00;FS=7.069;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.278;QD=23.17;ReadPosRankSum=2.290;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:5004,540,0 chrII 626656 . G A 5357.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.5849;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.81;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5357,571,0 chrII 626680 . A T 5295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=223;Dels=0.00;FS=6.482;HaplotypeScore=8.1721;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-1.558;QD=23.74;ReadPosRankSum=2.372;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:5295,568,0 chrII 627001 . T A 4645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=203;Dels=0.00;FS=3.163;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.459;QD=22.88;ReadPosRankSum=1.698;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4645,504,0 chrII 627055 . A T 4529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=199;Dels=0.00;FS=4.012;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.339;QD=22.76;ReadPosRankSum=1.697;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4529,495,0 chrII 628074 . C G 4555.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.7231;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.76;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4555,486,0 chrII 628267 . T C 1377 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=16.39;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1410,162,0 chrII 628269 . T C 1316 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=16.05;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1349,156,0 chrII 628345 . T C 1131 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=13.31;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1164,123,0 chrII 628674 . T C 1199 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.20;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1232,132,0 chrII 628807 . T C 975 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=18.40;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1008,108,0 chrII 628817 . G A 1263 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.05;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1296,135,0 chrII 628898 . T C 143.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DP=16;Dels=0.00;FS=12.041;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;MQRankSum=-1.302;QD=8.94;ReadPosRankSum=-1.735;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:1,15:16:21:176,21,0 chrII 628943 . C G 577 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:66:610,66,0 chrII 629013 . G A 1210 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1243,132,0 chrII 629133 . A G 1745 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=18.56;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1778,195,0 chrII 629145 . A G 1810 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=18.28;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1843,207,0 chrII 629259 . G A 5318.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.69;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5318,553,0 chrII 629636 . C T 2248 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=19.21;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2281,246,0 chrII 629641 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.86;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2297,246,0 chrII 629782 . T C 3799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.447;QD=24.04;ReadPosRankSum=1.688;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3799,408,0 chrII 630052 . C T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.8671;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.39;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3507,387,0 chrII 630091 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.01;FS=4.819;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.190;QD=17.55;ReadPosRankSum=1.694;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3262,351,0 chrII 630094 . A G 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.1580;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.890;QD=17.33;ReadPosRankSum=1.713;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:3204,360,0 chrII 630671 . T A 3699.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3699,396,0 chrII 630784 . C T 2998 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.2249;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3031,321,0 chrII 630833 . C T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.88;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3295,348,0 chrII 631243 . C T 3987.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3987,432,0 chrII 631321 . T C 3719.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.82;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3719,405,0 chrII 631353 . G A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.30;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3281,342,0 chrII 631572 . A T 2075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=88;Dels=0.00;FS=7.836;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.266;QD=23.58;ReadPosRankSum=2.338;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:2108,225,0 chrII 631668 . T C 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=99;Dels=0.00;FS=5.584;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.235;QD=23.87;ReadPosRankSum=2.909;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:3,96:99:99:2396,258,0 chrII 631864 . T C 1274 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.30;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1307,144,0 chrII 631870 . A G 1226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.323;QD=18.86;ReadPosRankSum=2.298;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1259,138,0 chrII 632170 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.04;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1711,180,0 chrII 632747 . T C 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.241;DP=146;Dels=0.00;FS=5.264;HaplotypeScore=15.8155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.501;QD=22.70;ReadPosRankSum=3.253;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:4,141:146:99:3314,369,0 chrII 632812 . G A 4519.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.26;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4519,498,0 chrII 632857 . C T 4350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=3.058;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.713;QD=23.90;ReadPosRankSum=0.876;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4350,454,0 chrII 632896 . G A 4136.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.0664;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.89;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4136,444,0 chrII 632908 . C T 4126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=207;Dels=0.00;FS=4.463;HaplotypeScore=6.3732;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-1.477;QD=19.93;ReadPosRankSum=-0.458;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:1,203:207:99:4126,444,0 chrII 632938 . G A 5229.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=12.2005;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.43;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5229,559,0 chrII 632980 . G A 6313.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=13.9813;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.62;SB=-3.167e+03 GT:AD:DP:GQ:PL 1/1:0,292:292:99:6313,693,0 chrII 633052 . G T 5906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=237;Dels=0.00;FS=3.933;HaplotypeScore=18.0190;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.555;QD=24.92;ReadPosRankSum=-1.290;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:1,234:237:99:5906,616,0 chrII 633129 . C T 5625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=254;Dels=0.00;FS=3.997;HaplotypeScore=17.2234;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.476;QD=22.15;ReadPosRankSum=0.683;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:1,250:254:99:5625,592,0 chrII 633176 . T G 5409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=257;Dels=0.00;FS=4.215;HaplotypeScore=16.7694;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.001;QD=21.05;ReadPosRankSum=1.705;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:1,255:257:99:5409,583,0 chrII 633308 . T A 4533.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=22.33;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4533,481,0 chrII 633318 . T C 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=3.762;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.950;QD=20.24;ReadPosRankSum=1.714;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,194:198:99:4007,429,0 chrII 633358 . T C 3592.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.07;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3592,384,0 chrII 633402 . G C 3520.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=18.82;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:3520,393,0 chrII 633409 . G A 3951.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.47;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3951,414,0 chrII 633468 . T G 5092.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=6.3561;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.85;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5092,552,0 chrII 633618 . A C 5031.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=15.8547;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.56;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:0,218:223:99:5031,549,0 chrII 633855 . T C 4944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.422;DP=225;Dels=0.00;FS=14.059;HaplotypeScore=10.5188;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.345;QD=21.97;ReadPosRankSum=3.336;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:4,221:225:99:4944,529,0 chrII 633876 . G A 5500.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=7.3476;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.73;SB=-3.016e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5500,589,0 chrII 633957 . G A 4744.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.47;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4744,493,0 chrII 633960 . C T 4388.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.68;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4388,480,0 chrII 633991 . T C 5341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.388;DP=262;Dels=0.00;FS=9.056;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.396;QD=20.39;ReadPosRankSum=3.401;SB=-3.470e+03 GT:AD:DP:GQ:PL 1/1:4,258:262:99:5341,571,0 chrII 634225 . C T 4991.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=23.11;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4991,529,0 chrII 634599 . G A 3981.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.1028;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.84;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3981,418,0 chrII 635127 . G A 2940 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.8232;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2973,330,0 chrII 635445 . A G 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.086;QD=21.50;ReadPosRankSum=2.357;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4580,498,0 chrII 635476 . G A 4536.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.16;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:4536,489,0 chrII 635478 . C T 4683.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=21.09;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4683,487,0 chrII 635928 . C A 5147.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.5677;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.28;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5147,553,0 chrII 636093 . T C 6106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=20.9490;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.054;QD=21.58;ReadPosRankSum=1.720;SB=-3.431e+03 GT:AD:DP:GQ:PL 1/1:1,280:283:99:6106,684,0 chrII 636168 . C T 5859.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=12.8482;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.98;SB=-3.170e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5859,636,0 chrII 636267 . C T 6375.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-2.964e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:6375,682,0 chrII 636372 . T C 5155.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.43;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5155,558,0 chrII 636537 . A G 3372.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.8611;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3372,378,0 chrII 636709 . C G 3428.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0109;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3428,387,0 chrII 636994 . T C 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.000;QD=22.19;ReadPosRankSum=1.708;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3184,339,0 chrII 637041 . C T 3867.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.72;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3867,406,0 chrII 637063 . T A 4223.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.55;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4223,450,0 chrII 637264 . T C 4735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.208;QD=21.52;ReadPosRankSum=1.684;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:1,217:220:99:4735,534,0 chrII 637366 . T C 6075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.446;QD=22.25;ReadPosRankSum=1.719;SB=-3.525e+03 GT:AD:DP:GQ:PL 1/1:1,271:273:99:6075,660,0 chrII 637447 . A G 5541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=249;Dels=0.00;FS=2.573;HaplotypeScore=16.4963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.012;QD=22.25;ReadPosRankSum=2.972;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:3,245:249:99:5541,612,0 chrII 637651 . C G 3186 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.97;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3219,348,0 chrII 637785 . T C 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=134;Dels=0.00;FS=6.527;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.305;QD=21.28;ReadPosRankSum=2.339;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2884,312,0 chrII 637795 . C A 2715 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.26;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2748,300,0 chrII 637928 . T G 4749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=203;Dels=0.00;FS=2.577;HaplotypeScore=11.4201;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.074;QD=23.39;ReadPosRankSum=2.965;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:3,200:203:99:4749,516,0 chrII 637990 . C T 4624.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.13;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4624,472,0 chrII 638086 . A G 6200.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=13.6646;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.70;SB=-2.839e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:6200,652,0 chrII 638716 . A G 5329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=15.0533;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.364;QD=21.75;ReadPosRankSum=1.704;SB=-3.111e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5329,576,0 chrII 639220 . C G 3152 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3358;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=23.18;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3185,366,0 chrII 639337 . C T 3071 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.3746;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.09;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3104,330,0 chrII 639427 . A G 2803 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.9695;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2836,303,0 chrII 639700 . C T 4816.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.32;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4816,502,0 chrII 639745 . G A 4423.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.5604;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.68;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4423,471,0 chrII 639793 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=21.2404;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.44;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4010,441,0 chrII 639832 . G A 4713.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.8749;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.22;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4713,510,0 chrII 640834 . T C 4467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=188;Dels=0.00;FS=7.855;HaplotypeScore=14.9393;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.151;QD=23.76;ReadPosRankSum=2.410;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:4467,477,0 chrII 641071 . T G 3791.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=17.9046;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.94;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3791,411,0 chrII 641302 . C T 3995.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3995,418,0 chrII 641433 . A G 3787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=162;Dels=0.00;FS=6.078;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.844;QD=23.38;ReadPosRankSum=2.931;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3787,411,0 chrII 641467 . A G 4494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=192;Dels=0.00;FS=3.032;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.276;QD=23.41;ReadPosRankSum=2.385;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4494,486,0 chrII 641842 . C T 4213.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=19.2640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,189:193:99:4213,456,0 chrII 642049 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2572,273,0 chrII 642483 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.25;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2625,276,0 chrII 642492 . A G 2558 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.14;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2591,288,0 chrII 642773 . G A 4611.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=23.89;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4611,504,0 chrII 642806 . A G 4233.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=24.61;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4233,450,0 chrII 642969 . A G 2389 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;MQRankSum=-0.825;QD=16.03;ReadPosRankSum=1.686;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2422,264,0 chrII 642976 . A C 2061 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;MQRankSum=-1.618;QD=15.38;ReadPosRankSum=2.413;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:2094,228,0 chrII 642978 . G A 2071 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.80;MQ0=0;QD=15.93;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2104,222,0 chrII 643098 . G T 2775 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.35;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2808,306,0 chrII 643134 . G A 3174 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.0131;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.51;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3207,336,0 chrII 643176 . G A 3052 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=22.78;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3085,336,0 chrII 643432 . G A 3142 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=23.62;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3175,336,0 chrII 643489 . G T 1475 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=32.85;MQ0=0;QD=19.93;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1508,159,0 chrII 643492 . G T 1225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=70;Dels=0.00;FS=15.378;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.21;MQ0=0;MQRankSum=-1.582;QD=17.50;ReadPosRankSum=1.632;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1258,141,0 chrII 643866 . A T 213 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=0;QD=8.19;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:30:246,30,0 chrII 643914 . G A 1398 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.81;MQ0=0;QD=22.55;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1431,156,0 chrII 643915 . T A 1424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.79;MQ0=0;MQRankSum=0.162;QD=22.25;ReadPosRankSum=1.678;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1457,162,0 chrII 643931 . T C 1807 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.83;MQ0=0;QD=22.31;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1840,204,0 chrII 643991 . A C 2362 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=22.93;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2395,258,0 chrII 644145 . G A 1597 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=40.63;MQ0=0;QD=12.98;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:1630,183,0 chrII 644333 . G T 3204 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=23.73;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3237,339,0 chrII 644482 . G C 3167 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3200,345,0 chrII 644529 . C T 3678.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.3762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3678,399,0 chrII 644646 . C T 4908.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.7101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4908,537,0 chrII 644790 . T C 6423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=262;Dels=0.00;FS=5.535;HaplotypeScore=14.9788;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.571;QD=24.52;ReadPosRankSum=2.934;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:3,257:262:99:6423,685,0 chrII 645021 . C T 4566.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=25.2328;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.94;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4566,492,0 chrII 645058 . C A 3524.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.98;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3524,378,0 chrII 645081 . T C 2849 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=18.03;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2882,312,0 chrII 645084 . C T 2983 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=19.00;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3016,312,0 chrII 645127 . C A 2343 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=16.62;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2376,252,0 chrII 645132 . A G 2062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.275;DP=145;Dels=0.00;FS=2.047;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;MQRankSum=-0.630;QD=14.22;ReadPosRankSum=2.491;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:4,139:145:99:2095,228,0 chrII 645158 . A G 2211 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=17.01;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2244,246,0 chrII 645289 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=23.32;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2832,297,0 chrII 645341 . A G 3014 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=23.92;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3047,339,0 chrII 645592 . C T 2166 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.63;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2199,234,0 chrII 645738 . A G 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.680;QD=21.98;ReadPosRankSum=1.701;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2517,282,0 chrII 645807 . T C 2791 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.51;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2824,303,0 chrII 646099 . C T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=3.14;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:50,6,0 chrII 646107 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=5.95;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:49,6,0 chrII 646209 . C T 1822 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.96;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1855,198,0 chrII 646524 . G A 4664.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.56;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4664,493,0 chrII 646716 . A T 4505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=191;Dels=0.00;FS=7.269;HaplotypeScore=16.0549;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.971;QD=23.59;ReadPosRankSum=2.372;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4505,486,0 chrII 646843 . A G 3733.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.9791;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.09;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3733,402,0 chrII 646863 . G A 3999.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=22.47;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3999,429,0 chrII 646935 . A T 5539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=233;Dels=0.00;FS=3.380;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.543;QD=23.77;ReadPosRankSum=1.717;SB=-2.942e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:5539,597,0 chrII 647284 . C T 4578.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.97;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4578,484,0 chrII 647422 . C G 3627.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.12;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3627,405,0 chrII 647496 . A C 3296.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.54;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3296,360,0 chrII 647502 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=21.42;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3225,351,0 chrII 647924 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.4261;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3671,393,0 chrII 648275 . C T 3510.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3510,366,0 chrII 648554 . C T 5175.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.4145;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.53;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5175,541,0 chrII 648668 . A G 3912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=176;Dels=0.00;FS=3.061;HaplotypeScore=14.5914;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.234;QD=22.23;ReadPosRankSum=1.652;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3912,426,0 chrII 649511 . C T 5630.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.82;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5630,598,0 chrII 649517 . A T 5351.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.66;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5351,565,0 chrII 649588 . C A 5142.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=25.8623;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=19.55;SB=-3.398e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:5142,541,0 chrII 649931 . T C 3132 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.6406;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.90;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3165,351,0 chrII 650261 . C T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.04;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=0.78;SB=-2.618e+02 GT:AD:DP:GQ:PL 1/1:0,22:23:6:50,6,0 chrII 650411 . A G 2690 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=25.87;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2723,291,0 chrII 650526 . G A 4047.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=25.78;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4047,421,0 chrII 650548 . G A 3806.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.7409;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.52;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3806,408,0 chrII 650605 . C T 4001.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=22.35;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4001,423,0 chrII 650619 . A G 3692.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.63;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:3692,402,0 chrII 650631 . C T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.7448;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.62;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3752,417,0 chrII 650976 . G A 5424.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,235:238:99:5424,600,0 chrII 651310 . C A 5139.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=5.8003;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5139,561,0 chrII 651616 . T A 5550.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=11.0394;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=18.81;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:1,294:295:99:5550,615,0 chrII 651951 . G A 4794.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.6500;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4794,508,0 chrII 652086 . C T 4539.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.7151;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.41;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4539,483,0 chrII 652113 . G A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.3792;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.31;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3879,408,0 chrII 652362 . C T 4191.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=23.68;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4191,448,0 chrII 652373 . G A 4358.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.1748;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=24.08;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4358,451,0 chrII 652587 . T C 6159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=12.0501;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.161;QD=23.60;ReadPosRankSum=2.431;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:2,259:261:99:6159,664,0 chrII 652830 . T C 5358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=283;Dels=0.00;FS=4.771;HaplotypeScore=8.6750;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.418;QD=18.93;ReadPosRankSum=1.671;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:1,281:283:99:5358,577,0 chrII 653007 . G A 1790 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=19.6663;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=13.46;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1823,192,0 chrII 653133 . C T 1596 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.82;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1629,174,0 chrII 653275 . A G 1624 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.30;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1657,180,0 chrII 653427 . T C 3412.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=22.30;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3412,369,0 chrII 653429 . G C 3208 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.70;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3241,354,0 chrII 653440 . C A 2908 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=20.34;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2941,321,0 chrII 653730 . A G 2323 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.36;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2356,264,0 chrII 653876 . G A 2762 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=22.83;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2795,294,0 chrII 654127 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=22.28;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2952,309,0 chrII 654312 . C T 3557.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=23.10;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3557,384,0 chrII 654339 . C G 2364 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;QD=17.26;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:2397,273,0 chrII 654351 . T C 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;MQRankSum=-0.698;QD=16.19;ReadPosRankSum=1.636;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:2381,267,0 chrII 654360 . T C 2486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;MQRankSum=-0.723;QD=16.46;ReadPosRankSum=1.709;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2519,276,0 chrII 654388 . A G 2507 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=16.17;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2540,279,0 chrII 654500 . G A 1806 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;QD=13.28;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:1839,198,0 chrII 654507 . T C 1368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=127;Dels=0.00;FS=4.014;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=37.78;MQ0=0;MQRankSum=-0.110;QD=10.77;ReadPosRankSum=1.705;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:1401,162,0 chrII 654520 . A C 864 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=132;Dels=0.00;FS=16.724;HaplotypeScore=24.1679;MLEAC=2;MLEAF=1.00;MQ=35.07;MQ0=0;MQRankSum=-2.675;QD=6.55;ReadPosRankSum=3.982;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:8,124:132:99:897,105,0 chrII 654523 . G T 733 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.04;FS=0.000;HaplotypeScore=22.5341;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;MQRankSum=-1.233;QD=5.96;ReadPosRankSum=1.468;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:84:766,84,0 chrII 654525 . C T 765 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=125;Dels=0.00;FS=14.884;HaplotypeScore=23.1221;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;MQRankSum=-1.935;QD=6.12;ReadPosRankSum=3.066;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:6,119:125:90:798,90,0 chrII 655451 . G A 2474 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.12;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2507,276,0 chrII 655511 . G A 2961 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=13.9094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.68;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2994,309,0 chrII 655607 . G A 1588 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.25;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1621,174,0 chrII 655620 . C T 1828 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=10.7513;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.46;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1861,195,0 chrII 656242 . A G 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.889;QD=21.83;ReadPosRankSum=1.670;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2478,270,0 chrII 656467 . G A 3137 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6318;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.13;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3170,339,0 chrII 656530 . G A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.03;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3879,420,0 chrII 656574 . T C 4045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=168;Dels=0.00;FS=2.574;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.578;QD=24.08;ReadPosRankSum=2.376;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:4045,435,0 chrII 656779 . T C 4429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=3.887;HaplotypeScore=16.7630;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=1.322;QD=23.81;ReadPosRankSum=1.713;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4429,477,0 chrII 657120 . G T 3121 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3154,345,0 chrII 657562 . A G 3546.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.15;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3546,390,0 chrII 657582 . T A 3860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=189;Dels=0.00;FS=8.667;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.786;QD=20.42;ReadPosRankSum=2.320;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3860,414,0 chrII 658243 . A G 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.391;QD=23.74;ReadPosRankSum=1.706;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3167,342,0 chrII 658786 . T C 3501.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.02;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.16;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3501,372,0 chrII 658797 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.61;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3459,369,0 chrII 659685 . A G 5868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=258;Dels=0.00;FS=4.873;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.363;QD=22.74;ReadPosRankSum=1.692;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:1,257:258:99:5868,666,0 chrII 659976 . C T 4965.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=20.6414;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.49;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4965,534,0 chrII 660237 . A G 5176.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=3;QD=22.90;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5176,564,0 chrII 660369 . A G 5567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=246;Dels=0.00;FS=6.037;HaplotypeScore=16.5309;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.654;QD=22.63;ReadPosRankSum=2.913;SB=-3.116e+03 GT:AD:DP:GQ:PL 1/1:3,239:246:99:5567,601,0 chrII 660402 . C T 6462.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=19.1217;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.76;SB=-3.499e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:6462,685,0 chrII 660728 . G A 4264.01 filter AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.8291;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=12;QD=21.32;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4264,451,0 chrII 661314 . T C 5001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.143;DP=236;Dels=0.00;FS=8.366;HaplotypeScore=19.5934;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=2.611;QD=21.19;ReadPosRankSum=3.379;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:4,232:236:99:5001,555,0 chrII 661542 . A T 7098.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=16.0545;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=23.35;SB=-3.782e+03 GT:AD:DP:GQ:PL 1/1:0,303:304:99:7098,769,0 chrII 661818 . T A 6812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=307;Dels=0.00;FS=4.578;HaplotypeScore=15.6072;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;MQRankSum=-0.976;QD=22.19;ReadPosRankSum=1.642;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:1,306:307:99:6812,730,0 chrII 661878 . G A 5026.01 filter AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=14.7199;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=8;QD=21.12;SB=-2.915e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5026,541,0 chrII 662073 . G A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.1960;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=17.11;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3336,360,0 chrII 662094 . A G 2929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=0.791;QD=16.83;ReadPosRankSum=1.612;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:2962,327,0 chrII 662112 . G A 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=4.797;HaplotypeScore=3.5141;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;MQRankSum=-0.338;QD=17.42;ReadPosRankSum=1.691;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:2994,330,0 chrII 662272 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.85;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3343,351,0 chrII 662354 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.5087;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=25.09;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3094,324,0 chrII 662444 . G A 1696 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1729,186,0 chrII 662477 . T A 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=4.954;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.446;QD=26.00;ReadPosRankSum=1.661;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2555,270,0 chrII 662669 . C T 2506 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=24.10;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2539,276,0 chrII 662749 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.17;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1909,210,0 chrII 663226 . G A 5050.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.6893;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.96;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5050,558,0 chrII 663478 . C T 3474.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.32;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3474,375,0 chrII 663562 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.3316;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.35;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3760,414,0 chrII 663901 . T C 3939.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.5909;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.29;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3939,447,0 chrII 664165 . T C 5184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.242;QD=24.34;ReadPosRankSum=1.699;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:5184,573,0 chrII 664354 . T A 5702.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=15.6319;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.72;SB=-3.296e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5702,598,0 chrII 664761 . G T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3623,376,0 chrII 665139 . G C 4423.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=17.5490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4423,495,0 chrII 665576 . C A 4324.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.37;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4324,451,0 chrII 665795 . A G 4716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=3.361;HaplotypeScore=13.1487;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.538;QD=22.78;ReadPosRankSum=1.698;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4716,507,0 chrII 666366 . A T 4581.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.3768;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.46;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4581,498,0 chrII 666708 . A G 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=143;Dels=0.00;FS=3.104;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.560;QD=22.08;ReadPosRankSum=1.658;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3191,345,0 chrII 666849 . T A 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=158;Dels=0.00;FS=2.938;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.101;QD=22.82;ReadPosRankSum=2.356;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3606,384,0 chrII 666875 . G A 3628.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.8730;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.72;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3628,376,0 chrII 666885 . G A 3603.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.71;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3603,384,0 chrII 667131 . G A 4576.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.65;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4576,501,0 chrII 667170 . C T 6077.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=17.3596;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.50;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:6077,640,0 chrII 667560 . T C 6601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=278;Dels=0.00;FS=6.065;HaplotypeScore=20.5719;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=2.589;QD=23.74;ReadPosRankSum=2.887;SB=-3.568e+03 GT:AD:DP:GQ:PL 1/1:3,273:278:99:6601,709,0 chrII 667779 . A G 5147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.400;DP=230;Dels=0.00;FS=5.237;HaplotypeScore=12.0860;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.187;QD=22.38;ReadPosRankSum=3.323;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:4,225:230:99:5147,579,0 chrII 668585 . A G 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=6.962;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=0.338;QD=17.09;ReadPosRankSum=1.645;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,158:161:99:2784,297,0 chrII 668596 . G A 2954 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=16.23;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,179:182:99:2987,309,0 chrII 668651 . C T 6931.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=15.4376;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.80;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,317:318:99:6931,739,0 chrII 668768 . G A 5498.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.5093;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=23.90;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5498,586,0 chrII 668968 . C T 4696.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.26;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4696,502,0 chrII 668984 . A G 4488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.949;QD=22.33;ReadPosRankSum=1.715;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:4488,481,0 chrII 669257 . C T 3210.99 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=20.45;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3244,339,0 chrII 669262 . C T 3391.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.06;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3391,357,0 chrII 669668 . G A 3557.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6329;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3557,367,0 chrII 670083 . T C 5006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=217;Dels=0.00;FS=2.626;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.454;QD=23.07;ReadPosRankSum=2.426;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:2,211:217:99:5006,546,0 chrII 670150 . C T 4570.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.97;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4570,484,0 chrII 670277 . G C 5172.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.44;SB=-2.930e+03 GT:AD:DP:GQ:PL 1/1:0,250:253:99:5172,561,0 chrII 670302 . G A 5197.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=6.3723;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=20.71;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5197,567,0 chrII 670480 . A T 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.002;QD=19.48;ReadPosRankSum=1.669;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3266,348,0 chrII 670742 . T C 3940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.230;QD=22.77;ReadPosRankSum=1.672;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3940,435,0 chrII 671233 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.0820;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.30;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3070,321,0 chrII 671376 . T C 2104 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.64;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2137,231,0 chrII 671544 . A T 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=3.269;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.503;QD=24.75;ReadPosRankSum=1.703;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3028,324,0 chrII 671577 . T C 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=111;Dels=0.00;FS=2.970;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.942;QD=23.98;ReadPosRankSum=2.361;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2695,300,0 chrII 672003 . A G 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=153;Dels=0.00;FS=2.997;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.715;QD=19.05;ReadPosRankSum=2.401;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2948,318,0 chrII 672013 . T C 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=152;Dels=0.00;FS=6.529;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=1.385;QD=19.30;ReadPosRankSum=2.400;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:2966,318,0 chrII 672049 . G A 3305.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=18.99;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3305,360,0 chrII 672147 . T G 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.0440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.931;QD=23.30;ReadPosRankSum=1.710;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3775,405,0 chrII 672200 . A C 3308.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.63;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3308,360,0 chrII 672318 . G A 3301.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.1327;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.25;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3301,345,0 chrII 673212 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.48;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3133,348,0 chrII 673311 . G A 1955 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.0229;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.58;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1988,213,0 chrII 673342 . T A 1350 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=61.4889;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.75;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1383,153,0 chrII 673390 . G T 1556 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=11.0245;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.21;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1589,168,0 chrII 673645 . A G 2035 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.76;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:2068,219,0 chrII 674295 . T A 4951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=203;Dels=0.00;FS=5.765;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.284;QD=24.39;ReadPosRankSum=2.935;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:3,199:203:99:4951,529,0 chrII 674848 . C T 4032.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4032,426,0 chrII 674889 . C T 4394.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.1394;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.53;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4394,454,0 chrII 675146 . G A 2612 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.32;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2645,282,0 chrII 675204 . T A 2245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.367;DP=129;Dels=0.00;FS=2.587;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-0.649;QD=17.40;ReadPosRankSum=2.196;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2278,252,0 chrII 675206 . A G 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=129;Dels=0.00;FS=7.903;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-1.043;QD=18.01;ReadPosRankSum=3.569;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:5,124:129:99:2356,261,0 chrII 675236 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.98;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2583,267,0 chrII 675293 . A G 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.590;DP=137;Dels=0.00;FS=14.811;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.769;QD=21.83;ReadPosRankSum=2.948;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:3,132:137:99:3024,333,0 chrII 675336 . T C 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.9681;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.044;QD=24.97;ReadPosRankSum=1.644;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3945,420,0 chrII 675612 . T C 5598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=245;Dels=0.00;FS=10.523;HaplotypeScore=14.6094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.605;QD=22.85;ReadPosRankSum=2.429;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:2,242:245:99:5598,639,0 chrII 675714 . G C 3146 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3179,357,0 chrII 675804 . A G 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.806;QD=22.66;ReadPosRankSum=1.672;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2662,288,0 chrII 675879 . G A 2955 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.09;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2988,333,0 chrII 676050 . T C 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-0.125;QD=21.50;ReadPosRankSum=1.704;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2763,303,0 chrII 676055 . G C 2531 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.25;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2564,288,0 chrII 676110 . G A 2143 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=19.48;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2176,237,0 chrII 676125 . T C 2156 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=20.73;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2189,234,0 chrII 676163 . T C 2022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.151;DP=108;Dels=0.00;FS=9.067;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.150;QD=18.72;ReadPosRankSum=2.404;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2055,231,0 chrII 676339 . T C 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.327;DP=121;Dels=0.00;FS=4.993;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=-0.979;QD=21.06;ReadPosRankSum=3.371;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:4,117:121:99:2581,273,0 chrII 676341 . A C 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=120;Dels=0.00;FS=5.192;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=1.121;QD=20.50;ReadPosRankSum=1.703;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2493,267,0 chrII 676380 . C T 1913 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=18.75;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1946,210,0 chrII 676447 . C T 2436 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.42;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2469,258,0 chrII 676481 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.76;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3392,360,0 chrII 676577 . G A 3668.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.66;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3668,399,0 chrII 676632 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=22.45;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3269,360,0 chrII 676645 . T C 3158 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.78;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3191,351,0 chrII 677014 . A G 4264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=3.528;HaplotypeScore=9.7960;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.382;QD=23.82;ReadPosRankSum=1.693;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4264,459,0 chrII 677110 . T C 4834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=210;Dels=0.00;FS=10.148;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.522;QD=23.02;ReadPosRankSum=2.966;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:3,205:210:99:4834,525,0 chrII 677653 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.29;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2715,300,0 chrII 677672 . G A 2833 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.46;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2866,300,0 chrII 677719 . A G 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=99;Dels=0.00;FS=6.335;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.137;QD=19.91;ReadPosRankSum=2.400;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2004,219,0 chrII 678377 . C T 4442.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.02;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4442,474,0 chrII 678410 . A G 5283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.557;QD=23.38;ReadPosRankSum=1.717;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:1,223:226:99:5283,559,0 chrII 678574 . G A 4155.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.42;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,190:194:99:4155,450,0 chrII 678648 . C T 4867.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.9040;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.18;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4867,525,0 chrII 678941 . G A 4059.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.94;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4059,432,0 chrII 678984 . A G 4691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.2178;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.089;QD=24.06;ReadPosRankSum=1.643;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4691,507,0 chrII 679024 . C T 4358.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.6342;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.12;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4358,459,0 chrII 679063 . G A 4124.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.54;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4124,450,0 chrII 679168 . C G 2918 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.94;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2951,315,0 chrII 679276 . A C 2010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.321;QD=18.27;ReadPosRankSum=2.405;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2043,228,0 chrII 679332 . G T 2483 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=12.0486;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.17;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2516,261,0 chrII 679502 . G A 1209 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.81;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1242,138,0 chrII 679565 . C T 2305 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.60;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2338,255,0 chrII 679642 . A G 2209 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=17.96;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2242,246,0 chrII 679643 . G T 2252 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.61;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2285,249,0 chrII 680372 . A G 1609 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=10.18;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:1642,177,0 chrII 680373 . A C 1647 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=10.42;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:1680,180,0 chrII 680550 . T C 2117 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=17.79;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2150,246,0 chrII 680703 . G A 1518 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.69;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1551,162,0 chrII 680726 . A G 1134 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.29;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1167,132,0 chrII 681025 . A G 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.230;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.625;QD=22.49;ReadPosRankSum=1.689;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3643,396,0 chrII 681127 . T A 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=128;Dels=0.00;FS=5.524;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-1.402;QD=24.45;ReadPosRankSum=2.945;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:3162,339,0 chrII 681206 . A T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.81;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3513,372,0 chrII 681344 . T G 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=3.228;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.957;QD=22.97;ReadPosRankSum=1.659;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3307,354,0 chrII 681398 . C T 2011 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.34;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2044,216,0 chrII 681414 . A G 2099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.189;QD=18.74;ReadPosRankSum=1.701;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2132,237,0 chrII 681488 . T A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.39;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3487,372,0 chrII 681492 . A G 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-1.291;QD=20.44;ReadPosRankSum=1.711;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3373,366,0 chrII 681557 . G A 2606 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=14.2351;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.36;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2639,282,0 chrII 682145 . G T 2373 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.4310;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.77;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2406,261,0 chrII 682192 . C T 2820 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=24.10;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2853,303,0 chrII 682449 . T C 3896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.410;DP=176;Dels=0.00;FS=14.687;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=1.203;QD=22.14;ReadPosRankSum=3.340;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:4,172:176:99:3896,417,0 chrII 682462 . C T 3871.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=22.38;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3871,414,0 chrII 682551 . T C 4257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.267;DP=182;Dels=0.00;FS=9.112;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.186;QD=23.39;ReadPosRankSum=3.382;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:4,177:182:99:4257,459,0 chrII 682968 . G A 5260.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=8.1573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5260,562,0 chrII 683084 . C T 4938.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.83;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:4938,526,0 chrII 683268 . A G 4619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=189;Dels=0.00;FS=3.222;HaplotypeScore=19.3715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.027;QD=24.44;ReadPosRankSum=1.714;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4619,493,0 chrII 683415 . C T 5564.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=18.8982;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.65;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:5564,595,0 chrII 683586 . T C 4041.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.62;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4041,450,0 chrII 684585 . G T 1896 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.07;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1929,201,0 chrII 684795 . A G 1441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5981;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=1.017;QD=22.52;ReadPosRankSum=1.622;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1474,159,0 chrII 684797 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=2.5981;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.34;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1463,159,0 chrII 685165 . A G 4247.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.84;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4247,453,0 chrII 685306 . T C 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=8.901;HaplotypeScore=5.1128;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.548;QD=21.56;ReadPosRankSum=1.653;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2879,315,0 chrII 685510 . C T 3093 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6592;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.21;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3126,330,0 chrII 685662 . T C 4609.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.4833;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.61;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4609,495,0 chrII 686563 . G A 4789.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.8501;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.14;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4789,516,0 chrII 686624 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6805;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.46;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2863,306,0 chrII 686767 . A G 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=3.572;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.651;QD=21.33;ReadPosRankSum=1.692;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3711,396,0 chrII 686783 . G A 3620.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.0318;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.22;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3620,396,0 chrII 687029 . C T 4625.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.96;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4625,490,0 chrII 687350 . T C 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=165;Dels=0.00;FS=3.367;HaplotypeScore=7.8863;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.123;QD=22.52;ReadPosRankSum=1.711;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3716,399,0 chrII 687626 . A T 3877.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.15;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3877,423,0 chrII 687872 . T A 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=15.1909;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.190;QD=22.37;ReadPosRankSum=1.690;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3668,399,0 chrII 687980 . G A 3900.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.3788;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.07;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3900,409,0 chrII 688355 . C T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.6534;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.67;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4375,471,0 chrII 688364 . G A 4406.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=22.25;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4406,466,0 chrII 688475 . G A 3163 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.2122;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.23;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3196,327,0 chrII 688487 . C T 3298.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.06;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3298,342,0 chrII 688640 . G A 3626.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.36;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3626,384,0 chrII 688700 . A T 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=3.582;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.925;QD=23.68;ReadPosRankSum=1.685;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3458,372,0 chrII 688949 . T A 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=153;Dels=0.00;FS=3.854;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.147;QD=23.07;ReadPosRankSum=1.709;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3530,378,0 chrII 689085 . A C 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.836;QD=22.37;ReadPosRankSum=1.708;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3254,360,0 chrII 689156 . C T 3275.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3275,345,0 chrII 689867 . G C 4077.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.57;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4077,456,0 chrII 689912 . G A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.12;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3423,366,0 chrII 689996 . A C 4327.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.42;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4327,471,0 chrII 690123 . T C 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=153;Dels=0.00;FS=5.458;HaplotypeScore=11.1763;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.625;QD=22.43;ReadPosRankSum=2.954;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3432,369,0 chrII 690313 . T C 4409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=3.056;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.276;QD=22.73;ReadPosRankSum=1.714;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:1,189:194:99:4409,477,0 chrII 690330 . G A 4140.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.50;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4140,450,0 chrII 691208 . T C 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.283;DP=179;Dels=0.00;FS=13.856;HaplotypeScore=17.1472;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;MQRankSum=-0.064;QD=21.26;ReadPosRankSum=3.401;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:4,174:179:99:3806,429,0 chrII 691367 . C T 3925.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.08;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3925,414,0 chrII 691485 . G T 5854.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=15.8859;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.05;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5854,616,0 chrII 691521 . A G 6347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=269;Dels=0.00;FS=7.870;HaplotypeScore=14.3701;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.437;QD=23.59;ReadPosRankSum=2.395;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:2,267:269:99:6347,679,0 chrII 691649 . G A 3362.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.69;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3362,357,0 chrII 691707 . G C 4285.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.9968;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.57;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,211:218:99:4285,471,0 chrII 691742 . T C 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=5.740;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.732;QD=20.93;ReadPosRankSum=1.714;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,194:198:99:4145,444,0 chrII 691776 . G T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.09;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3260,351,0 chrII 691838 . G A 3045 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.3999;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.98;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3078,324,0 chrII 691869 . G A 2602 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.87;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2635,291,0 chrII 691880 . A G 2356 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=20.49;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2389,252,0 chrII 691893 . T C 2215 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=18.31;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2248,246,0 chrII 691937 . C T 2131 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=17.47;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2164,234,0 chrII 691950 . C T 2383 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=18.47;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2416,246,0 chrII 692083 . C A 4259.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.34;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4259,442,0 chrII 692126 . G C 3756.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=23.77;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3756,399,0 chrII 692195 . A G 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=140;Dels=0.00;FS=5.940;HaplotypeScore=16.6080;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.197;QD=22.57;ReadPosRankSum=2.832;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:3,135:140:99:3193,348,0 chrII 692366 . A T 3417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=131;Dels=0.00;FS=7.272;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.211;QD=26.08;ReadPosRankSum=2.412;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3417,360,0 chrII 692680 . C T 2475 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=25.00;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2508,267,0 chrII 692883 . C T 3401.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.12;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3401,369,0 chrII 692889 . C T 3153 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.02;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3186,345,0 chrII 693069 . A T 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=3.122;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.425;QD=25.26;ReadPosRankSum=1.710;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3991,426,0 chrII 693391 . G A 4579.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.89;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4579,478,0 chrII 693469 . C T 3938.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3938,429,0 chrII 693651 . T C 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=170;Dels=0.00;FS=9.505;HaplotypeScore=13.6750;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=1.351;QD=23.95;ReadPosRankSum=2.911;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:4071,441,0 chrII 693825 . T A 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=180;Dels=0.00;FS=2.957;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.180;QD=23.76;ReadPosRankSum=2.340;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4277,451,0 chrII 693923 . T C 2954 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=142;Dels=0.00;FS=9.904;HaplotypeScore=3.5495;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;MQRankSum=-1.295;QD=20.80;ReadPosRankSum=2.907;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:3,137:142:99:2987,327,0 chrII 693925 . G A 3046 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=21.60;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3079,333,0 chrII 693928 . C T 3108 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=21.14;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3141,336,0 chrII 694124 . G A 2833 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=20.24;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2866,303,0 chrII 694133 . G A 2627 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=19.46;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2660,279,0 chrII 694151 . T A 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=143;Dels=0.00;FS=3.036;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;MQRankSum=-1.401;QD=17.08;ReadPosRankSum=2.364;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2476,264,0 chrII 694153 . T C 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=147;Dels=0.00;FS=6.095;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;MQRankSum=-0.377;QD=16.62;ReadPosRankSum=2.898;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:2476,264,0 chrII 694443 . A T 1576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.289;QD=21.89;ReadPosRankSum=1.684;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1609,174,0 chrII 694512 . A G 1409 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1442,156,0 chrII 694669 . G A 49.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.49;SB=-5.321e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:82,9,0 chrII 694728 . G A 172.03 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=17.20;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:24:205,24,0 chrII 695368 . T C 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=172;Dels=0.00;FS=2.894;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.567;QD=22.63;ReadPosRankSum=2.378;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3892,435,0 chrII 695575 . T C 4680.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=17.2781;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=21.67;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4680,513,0 chrII 695857 . A T 4347.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.02;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4347,465,0 chrII 696541 . T C 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.2852;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.488;QD=22.24;ReadPosRankSum=1.710;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3492,372,0 chrII 696652 . T C 4375.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.2562;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.79;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4375,474,0 chrII 696781 . A G 4501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=195;Dels=0.00;FS=6.317;HaplotypeScore=11.1860;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.589;QD=23.08;ReadPosRankSum=2.386;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4501,489,0 chrII 697043 . T C 6228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.331;DP=268;Dels=0.00;FS=5.209;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.297;QD=23.24;ReadPosRankSum=3.350;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:4,263:268:99:6228,687,0 chrII 697455 . C T 2622 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.0733;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.62;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2655,279,0 chrII 697695 . C T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.6815;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.17;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3335,366,0 chrII 697900 . T G 2327 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.9641;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.51;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2360,258,0 chrII 697933 . C A 1651 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.93;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1684,180,0 chrII 698208 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.02;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1310,138,0 chrII 698648 . A T 5026.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.5474;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.60;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5026,543,0 chrII 698958 . T C 4123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.202;DP=185;Dels=0.00;FS=13.698;HaplotypeScore=17.5194;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.110;QD=22.29;ReadPosRankSum=3.336;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:4,179:185:99:4123,444,0 chrII 699169 . A G 4304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=182;Dels=0.00;FS=7.541;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.794;QD=23.65;ReadPosRankSum=2.422;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:2,176:182:99:4304,471,0 chrII 699308 . T C 4187.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4187,459,0 chrII 699380 . G A 4792.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.5247;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:4792,528,0 chrII 699560 . T C 6137.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=21.6013;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.70;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:6137,655,0 chrII 699675 . T C 5260.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.17;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:5260,559,0 chrII 699878 . A G 4582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=205;Dels=0.00;FS=2.727;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.880;QD=22.35;ReadPosRankSum=2.366;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4582,486,0 chrII 700005 . A G 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=127;Dels=0.00;FS=2.826;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.101;QD=20.98;ReadPosRankSum=2.331;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:2,122:127:99:2697,288,0 chrII 700064 . G C 2770 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.30;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2803,306,0 chrII 700097 . T C 2473 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.11;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2506,270,0 chrII 700199 . A T 852 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-1.713;QD=14.95;ReadPosRankSum=2.320;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,55:57:99:885,99,0 chrII 700223 . G C 1020 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.62;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1053,111,0 chrII 700246 . T C 1212 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.90;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1245,135,0 chrII 700423 . T C 1534 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.344;QD=25.15;ReadPosRankSum=2.369;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,59:61:99:1567,171,0 chrII 700682 . G A 5964.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=8.0279;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.24;SB=-3.244e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5964,616,0 chrII 700715 . C T 5101.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=8.3118;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.08;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,239:242:99:5101,558,0 chrII 700736 . G A 4810.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.73;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:4810,505,0 chrII 703873 . G A 6588.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=9.0071;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.36;SB=-3.758e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:6588,700,0 chrII 704219 . T C 2376 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.21;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2409,258,0 chrII 704358 . G T 844 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.63;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:93:877,93,0 chrII 705558 . C T 3546.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3546,387,0 chrII 706067 . G A 4422.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.4663;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4422,466,0 chrII 707207 . A G 2270 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.3110;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.48;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2303,261,0 chrII 707491 . C T 2826 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.43;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2859,309,0 chrII 708909 . A G 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.026;QD=21.50;ReadPosRankSum=1.709;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3290,366,0 chrII 708952 . T C 4258.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=3.035;HaplotypeScore=9.3913;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.997;QD=23.79;ReadPosRankSum=1.693;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4258,448,0 chrII 710109 . A G 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=182;Dels=0.00;FS=2.673;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.581;QD=22.52;ReadPosRankSum=2.246;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:4099,447,0 chrII 712022 . C G 113.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;DP=182;Dels=0.00;FS=258.744;HaplotypeScore=16.5623;MLEAC=1;MLEAF=0.500;MQ=57.73;MQ0=0;MQRankSum=-0.034;QD=0.62;ReadPosRankSum=-7.422;SB=0.163 GT:AD:DP:GQ:PL 0/1:139,42:182:99:143,0,2234 chrII 714256 . T C 3422.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3422,366,0 chrII 715254 . G A 5564.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.40;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5564,580,0 chrII 716467 . C T 1001 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.25;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1034,111,0 chrII 716483 . G A 1067 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=19.40;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1100,120,0 chrII 716927 . T C 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.1904;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.716;QD=24.47;ReadPosRankSum=2.422;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4405,474,0 chrII 719785 . A G 2387 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2420,273,0 chrII 720889 . C G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.504;DP=108;Dels=0.00;FS=2.769;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=0.973;QD=0.19;ReadPosRankSum=-1.911;SB=-1.128e+02 GT:AD:DP:GQ:PL 1/1:103,2:108:6:52,6,0 chrII 721088 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.32;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3068,318,0 chrII 722169 . G A 3781.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.48;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3781,399,0 chrII 722533 . C T 2590 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2623,279,0 chrII 722589 . C T 4182.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.5585;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.47;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4182,447,0 chrII 723175 . G C 5528.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=16.3187;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.84;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,238:242:99:5528,600,0 chrII 724613 . T G 2248 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.04;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2281,255,0 chrII 724643 . C A 2035 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2068,222,0 chrII 725153 . C G 3048 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.41;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3081,345,0 chrII 725168 . A G 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=0.662;QD=19.35;ReadPosRankSum=1.660;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:3734,420,0 chrII 730168 . G T 1960 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.42;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1993,213,0 chrII 732123 . C T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.55;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3297,351,0 chrII 734445 . A G 4990.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.2059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4990,543,0 chrII 734490 . G A 4803.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4803,496,0 chrII 734775 . G A 5840.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=18.4855;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=24.13;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5840,651,0 chrII 737951 . T G 5313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.457;QD=24.83;ReadPosRankSum=1.716;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,213:214:99:5313,591,0 chrII 739500 . A G 3723.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.6116;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.59;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3723,399,0 chrII 739892 . T G 4630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.126;QD=25.16;ReadPosRankSum=1.713;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4630,501,0 chrII 740827 . G A 5555.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=19.6776;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.95;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:0,238:242:99:5555,586,0 chrII 741872 . G A 3073 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3106,321,0 chrII 742609 . A G 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.492;QD=20.04;ReadPosRankSum=1.684;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1476,159,0 chrII 742721 . C G 1117 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.48;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1150,126,0 chrII 742956 . G T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.10;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3393,357,0 chrII 744063 . G A 4901.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.26;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4901,508,0 chrII 744252 . G A 5170.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.1620;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.94;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5170,547,0 chrII 744342 . C T 3717.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.9289;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.86;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3717,402,0 chrII 744356 . A C 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=-0.699;QD=21.34;ReadPosRankSum=1.712;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3671,405,0 chrII 744413 . G T 2457 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=16.16;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2490,255,0 chrII 744417 . A G 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=0.109;QD=16.29;ReadPosRankSum=1.708;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2363,258,0 chrII 744466 . C T 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.318;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.489;QD=17.28;ReadPosRankSum=0.400;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2089,219,0 chrII 744516 . A G 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-1.013;QD=21.84;ReadPosRankSum=1.705;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2872,312,0 chrII 744519 . A G 2861 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.51;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2894,312,0 chrII 744640 . A T 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=1.095;QD=22.62;ReadPosRankSum=1.613;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2001,207,0 chrII 744816 . C T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.72;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3606,387,0 chrII 744823 . G A 3415.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.1741;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.21;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3415,354,0 chrII 745190 . G A 3007 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.2961;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.79;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3040,330,0 chrII 745192 . C G 3021 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.1269;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.37;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3054,327,0 chrII 745280 . C A 3677.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3677,393,0 chrII 745349 . G C 3588.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.08;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3588,399,0 chrII 745793 . G A 3650.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.01;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3650,387,0 chrII 746171 . G A 2165 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.32;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2198,240,0 chrII 746478 . G A 4174.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4174,456,0 chrII 746514 . C T 3857.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3857,414,0 chrII 746583 . C T 2983 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.46;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3016,321,0 chrII 746619 . C T 3486.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.1667;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.52;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3486,378,0 chrII 747177 . A T 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.610;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.447;QD=25.28;ReadPosRankSum=1.620;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3168,330,0 chrII 748042 . A G 2541 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.16;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2574,276,0 chrII 748066 . T C 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.196;QD=25.53;ReadPosRankSum=1.704;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3199,345,0 chrII 748404 . T C 6380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=308;Dels=0.00;FS=4.059;HaplotypeScore=19.7558;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.326;QD=20.71;ReadPosRankSum=1.686;SB=-3.185e+03 GT:AD:DP:GQ:PL 1/1:1,303:308:99:6380,714,0 chrII 748514 . A C 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=189;Dels=0.00;FS=2.994;HaplotypeScore=18.7500;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.594;QD=21.22;ReadPosRankSum=2.423;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4010,444,0 chrII 748630 . C G 4924.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.8671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:4924,529,0 chrII 749056 . C T 4898.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.55;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4898,514,0 chrII 749314 . C G 4491.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.3678;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.68;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4491,495,0 chrII 749547 . C A 3791.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3791,400,0 chrII 749992 . T C 5402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.005;DP=237;Dels=0.00;FS=14.446;HaplotypeScore=21.3910;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.364;QD=22.79;ReadPosRankSum=4.145;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:6,228:237:99:5402,597,0 chrII 750088 . T C 3967.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.04;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3967,429,0 chrII 750157 . T C 3293.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.3766;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.81;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3293,354,0 chrII 750649 . A C 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.148;QD=22.50;ReadPosRankSum=1.689;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3600,399,0 chrII 750709 . A C 3430.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.33;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3430,372,0 chrII 750714 . G T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.54;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3381,351,0 chrII 750883 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.73;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2531,273,0 chrII 750970 . T C 1611 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1534;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.07;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1644,177,0 chrII 751317 . T C 1773 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.97;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1806,198,0 chrII 751854 . A G 3029 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.48;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3062,345,0 chrII 751983 . T G 3138 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.6370;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.07;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3171,351,0 chrII 752106 . G A 3180 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=41.45;MQ0=0;QD=22.08;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3213,357,0 chrII 752136 . A G 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=162;Dels=0.00;FS=3.857;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;MQRankSum=-0.482;QD=22.04;ReadPosRankSum=1.710;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,157:162:99:3570,387,0 chrII 752153 . C T 4068.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=22.48;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4068,427,0 chrII 752266 . A G 3622.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.7086;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=19.90;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3622,387,0 chrII 752292 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=3.199;HaplotypeScore=9.4770;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;MQRankSum=-1.658;QD=17.95;ReadPosRankSum=1.714;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3392,369,0 chrII 752310 . T C 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.155;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.8173;MLEAC=2;MLEAF=1.00;MQ=39.01;MQ0=0;MQRankSum=-0.866;QD=15.57;ReadPosRankSum=0.686;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:3023,324,0 chrII 752329 . T C 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=199;Dels=0.00;FS=12.623;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;MQRankSum=1.241;QD=11.57;ReadPosRankSum=3.381;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:4,195:199:99:2336,255,0 chrII 752333 . C T 2121 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=36.58;MQ0=0;QD=10.88;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:2154,234,0 chrII 752344 . C T 2292 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=39.10;MQ0=0;QD=11.18;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:2325,243,0 chrII 752361 . G A 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;MQRankSum=-0.476;QD=12.82;ReadPosRankSum=0.547;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:2508,267,0 chrII 752501 . G C 6050.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=23.54;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:6050,678,0 chrII 752538 . A G 5773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=236;Dels=0.00;FS=10.891;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;MQRankSum=0.498;QD=24.46;ReadPosRankSum=2.970;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:3,231:236:99:5773,622,0 chrII 752597 . T C 6698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.300;DP=271;Dels=0.00;FS=5.228;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=-1.398;QD=24.72;ReadPosRankSum=3.377;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:4,267:271:99:6698,732,0 chrII 752672 . T C 6262.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=16.9427;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.53;SB=-3.751e+03 GT:AD:DP:GQ:PL 1/1:0,276:278:99:6262,670,0 chrII 752718 . T C 5433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=246;Dels=0.01;FS=3.482;HaplotypeScore=15.4032;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=1.062;QD=22.09;ReadPosRankSum=1.704;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:2,242:244:99:5433,580,0 chrII 752744 . C T 4836.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.42;SB=-3.037e+03 GT:AD:DP:GQ:PL 1/1:0,245:249:99:4836,534,0 chrII 752777 . T C 5557.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=18.97;SB=-3.643e+03 GT:AD:DP:GQ:PL 1/1:0,291:293:99:5557,624,0 chrII 752810 . T C 5602.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=7.4676;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=0.308;QD=17.45;ReadPosRankSum=0.987;SB=-4.122e+03 GT:AD:DP:GQ:PL 1/1:1,320:321:99:5602,606,0 chrII 752814 . G A 5310.01 SnpCluster AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=3.2666;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=16.86;SB=-3.886e+03 GT:AD:DP:GQ:PL 1/1:0,314:315:99:5310,579,0 chrII 752817 . A G 5342.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.803;DP=313;Dels=0.00;FS=11.814;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=-1.382;QD=17.07;ReadPosRankSum=3.833;SB=-3.866e+03 GT:AD:DP:GQ:PL 1/1:5,308:313:99:5342,582,0 chrII 752916 . G A 4428.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=21.81;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4428,477,0 chrII 752933 . C T 4273.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=21.91;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4273,456,0 chrII 753131 . T A 3604.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=21.84;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3604,378,0 chrII 753144 . C G 3464.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=20.99;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3464,366,0 chrII 753196 . C A 2694 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=17.49;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2727,294,0 chrII 753198 . C T 2647 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=16.75;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2680,282,0 chrII 753285 . G A 3422.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.4043;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3422,366,0 chrII 753573 . T C 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=3.802;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.397;QD=22.79;ReadPosRankSum=1.624;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2221,246,0 chrII 753610 . T C 2222 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.67;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2255,243,0 chrII 753721 . T C 1946 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=21.62;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1979,210,0 chrII 753723 . A G 1851 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=20.80;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1884,204,0 chrII 753753 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=17.54;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1489,162,0 chrII 753759 . C T 1353 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=16.70;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1386,147,0 chrII 753770 . T C 1320 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=16.10;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1353,147,0 chrII 753909 . G A 2546 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.0933;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.76;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2579,282,0 chrII 753942 . C T 2628 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=22.46;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2661,285,0 chrII 753990 . T C 2513 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=23.49;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2546,273,0 chrII 754103 . A T 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=124;Dels=0.00;FS=2.856;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.050;QD=23.56;ReadPosRankSum=2.370;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2955,315,0 chrII 754139 . G A 2612 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=24.19;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2645,279,0 chrII 754188 . G A 2023 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.99;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2056,222,0 chrII 754197 . T C 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=95;Dels=0.00;FS=3.443;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-1.513;QD=20.79;ReadPosRankSum=1.696;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2008,219,0 chrII 754343 . A G 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=10.055;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-0.602;QD=21.90;ReadPosRankSum=2.394;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1960,210,0 chrII 754355 . G A 2147 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.34;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2180,228,0 chrII 754404 . A G 1979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.405;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-0.377;QD=21.51;ReadPosRankSum=1.582;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2012,213,0 chrII 754416 . A G 1747 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=19.41;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1780,189,0 chrII 754436 . T C 1914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.199;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.737;QD=20.36;ReadPosRankSum=1.695;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1947,210,0 chrII 754776 . G A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.6398;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.44;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4242,465,0 chrII 754833 . T C 4524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.433;QD=24.59;ReadPosRankSum=1.694;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4524,489,0 chrII 754911 . A G 3827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.428;QD=22.25;ReadPosRankSum=1.712;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3827,429,0 chrII 755157 . G T 3634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=15.0335;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.640;QD=23.91;ReadPosRankSum=0.883;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3634,387,0 chrII 755817 . T C 2725 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.55;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2758,294,0 chrII 756042 . T C 2220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.5527;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.999;QD=21.14;ReadPosRankSum=1.632;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2253,240,0 chrII 756063 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=19.97;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2290,252,0 chrII 756114 . T A 2705 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.47;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2738,297,0 chrII 756213 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.73;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2189,240,0 chrII 756267 . T C 3084 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.42;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3117,339,0 chrII 756363 . A G 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=141;Dels=0.00;FS=7.698;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.080;QD=23.59;ReadPosRankSum=2.415;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3326,360,0 chrII 756533 . C A 3820.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.21;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3820,400,0 chrII 757005 . A G 2062 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.9062;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.83;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2095,225,0 chrII 757411 . T C 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=126;Dels=0.00;FS=3.300;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.056;QD=23.50;ReadPosRankSum=1.704;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2994,324,0 chrII 757437 . G C 2661 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.97;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2694,291,0 chrII 757498 . A T 3054 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=22.96;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3087,321,0 chrII 757513 . C T 2984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.872;DP=146;Dels=0.00;FS=3.485;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.466;QD=20.44;ReadPosRankSum=0.131;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3017,304,0 chrII 757931 . C T 4231.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=18.7388;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4231,447,0 chrII 763667 . G A 3957.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.8736;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.69;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3957,432,0 chrII 764397 . C A 3191 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.8225;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3224,342,0 chrII 764475 . C A 2502 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.86;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2535,273,0 chrII 764689 . T C 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.940;QD=24.92;ReadPosRankSum=1.699;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2650,285,0 chrII 764882 . A G 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.973;QD=23.70;ReadPosRankSum=1.613;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3508,381,0 chrII 767663 . T C 3170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=148;Dels=0.00;FS=3.040;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.176;QD=21.42;ReadPosRankSum=2.416;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3203,351,0 chrII 767690 . A T 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=0.499;QD=19.43;ReadPosRankSum=1.926;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3044,318,0 chrII 767691 . T C 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.359;DP=154;Dels=0.00;FS=2.752;HaplotypeScore=1.8268;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=-0.391;QD=18.52;ReadPosRankSum=1.923;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:2885,312,0 chrII 767731 . T C 2990 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.1950;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=16.70;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3023,324,0 chrII 767899 . G A 3818.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.5595;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=24.32;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3818,408,0 chrII 767991 . A G 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=112;Dels=0.01;FS=3.512;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;MQRankSum=-0.409;QD=24.23;ReadPosRankSum=1.669;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2747,297,0 chrII 768165 . T A 2698 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=20.91;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2731,282,0 chrII 768196 . G A 2210 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;QD=17.40;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2243,237,0 chrII 768210 . C G 1911 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;QD=14.48;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1944,207,0 chrII 768214 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;QD=13.96;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:1917,207,0 chrII 768260 . T G 2959 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.13;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2992,336,0 chrII 768374 . G A 3915.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=23.73;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3915,420,0 chrII 769003 . G A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.15;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3773,388,0 chrII 769150 . G A 4092.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4092,456,0 chrII 769258 . C T 5582.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=16.4416;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.06;SB=-3.023e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5582,595,0 chrII 769303 . G C 5526.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.2072;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.92;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5526,621,0 chrII 769903 . G A 3069 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.17;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3102,333,0 chrII 770543 . G T 3037 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.50;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3070,324,0 chrII 770709 . T C 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.184;DP=135;Dels=0.00;FS=2.402;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.883;QD=20.28;ReadPosRankSum=3.341;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:4,130:135:99:2771,306,0 chrII 770771 . T C 4809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=208;Dels=0.00;FS=5.963;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.106;QD=23.12;ReadPosRankSum=2.850;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:4809,525,0 chrII 771838 . T A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3255,342,0 chrII 772129 . T C 2822 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.0046;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.20;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2855,309,0 chrII 772302 . T C 3166 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.98;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3199,345,0 chrII 772498 . C T 2600 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.01;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2633,282,0 chrII 772534 . C T 2335 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.35;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2368,255,0 chrII 772685 . C T 2470 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.45;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2503,267,0 chrII 773042 . G A 3907.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3907,409,0 chrII 773188 . G C 2763 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.09;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2796,297,0 chrII 773200 . G A 2666 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.05;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2699,297,0 chrII 773821 . T A 237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=20;Dels=0.00;FS=6.160;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.847;QD=11.85;ReadPosRankSum=2.329;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:3,17:20:30:270,30,0 chrII 774253 . C T 2653 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.36;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2686,294,0 chrII 774535 . A C 1242 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.0356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1275,138,0 chrII 774954 . T C 4549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=198;Dels=0.00;FS=2.743;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.429;QD=22.97;ReadPosRankSum=2.374;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:2,193:198:99:4549,507,0 chrII 775070 . T C 5452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.322;DP=255;Dels=0.00;FS=8.953;HaplotypeScore=22.8018;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.691;QD=21.38;ReadPosRankSum=3.426;SB=-3.167e+03 GT:AD:DP:GQ:PL 1/1:4,247:255:99:5452,586,0 chrII 777303 . A G 5557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=230;Dels=0.00;FS=3.409;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.383;QD=24.16;ReadPosRankSum=1.702;SB=-2.804e+03 GT:AD:DP:GQ:PL 1/1:1,227:230:99:5557,612,0 chrII 779687 . T A 4483.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.2081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4483,469,0 chrII 780187 . A G 14861.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.714;DP=615;Dels=0.00;FS=14.116;HaplotypeScore=41.5903;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.205;QD=24.16;ReadPosRankSum=2.473;SB=-5.134e+03 GT:AD:DP:GQ:PL 1/1:5,609:615:99:14861,1586,0 chrII 782166 . G A 5062.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.7586;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.69;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5062,558,0 chrII 784284 . T A 3873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=3.943;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.295;QD=22.01;ReadPosRankSum=1.693;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3873,414,0 chrII 784600 . C T 2821 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8357;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.04;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2854,300,0 chrII 785333 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=154;Dels=0.00;FS=3.242;HaplotypeScore=8.1349;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.427;QD=21.27;ReadPosRankSum=1.710;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3276,357,0 chrII 785852 . G A 2453 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=18.2581;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.02;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2486,270,0 chrII 786053 . T C 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=110;Dels=0.00;FS=4.616;HaplotypeScore=9.3526;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.701;QD=19.17;ReadPosRankSum=1.638;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2142,240,0 chrII 786540 . G A 3180 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.71;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3213,348,0 chrII 786589 . T G 3867.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6567;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.16;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3867,417,0 chrII 787656 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.30;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3611,396,0 chrII 788369 . C T 3772.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.0555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3772,411,0 chrII 792237 . A G 1947 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.7109;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1980,216,0 chrII 795756 . C G 5305.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=16.1898;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.90;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5305,574,0 chrII 796648 . C T 887 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:920,99,0 chrII 797599 . C G 3820.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.9429;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:3820,417,0 chrII 798782 . A G 3183 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.5911;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3216,345,0 chrII 799021 . C T 2881 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.1973;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.43;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2914,318,0 chrII 799494 . C T 4207.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.5087;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.19;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4207,447,0 chrII 800115 . C T 2334 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2367,252,0 chrII 800655 . T C 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=4.433;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.560;QD=24.10;ReadPosRankSum=1.707;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3302,357,0 chrII 800746 . T C 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=158;Dels=0.00;FS=3.027;HaplotypeScore=16.6473;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=2.276;QD=22.15;ReadPosRankSum=2.402;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3500,384,0 chrII 800911 . A C 4125.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.18;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4125,444,0 chrII 801614 . A T 2510 SnpCluster AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=12.61;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:2543,282,0 chrII 801616 . A G 2350 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.53;MQ0=0;MQRankSum=-1.679;QD=11.93;ReadPosRankSum=1.714;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:2383,270,0 chrII 801617 . G A 2397 SnpCluster AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;QD=12.23;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:2430,273,0 chrII 801620 . T C 2556 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=214;Dels=0.00;FS=9.216;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=26.79;MQ0=0;MQRankSum=1.024;QD=11.94;ReadPosRankSum=2.948;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:3,211:214:99:2589,279,0 chrII 801624 . C T 2532 SnpCluster AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;QD=11.46;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:2565,270,0 chrII 801628 . A G 2327 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.419;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.1747;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=0;MQRankSum=0.552;QD=11.08;ReadPosRankSum=3.419;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:4,206:210:99:2360,258,0 chrII 801629 . C A 2329 SnpCluster AC=2;AF=1.00;AN=2;DP=208;Dels=0.01;FS=0.000;HaplotypeScore=4.5889;MLEAC=2;MLEAF=1.00;MQ=26.66;MQ0=0;QD=11.20;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:2362,258,0 chrII 801634 . T C 2011 SnpCluster AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=0;QD=9.49;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:2044,237,0 chrII 801635 . A G 2162 SnpCluster AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=10.06;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:2195,243,0 chrII 801638 . C T 2352 SnpCluster AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=5.5623;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=9.76;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:2385,255,0 chrII 801647 . A G 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.111;DP=276;Dels=0.00;FS=1.571;HaplotypeScore=9.5364;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;MQRankSum=-1.514;QD=9.61;ReadPosRankSum=4.022;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:6,265:276:99:2684,297,0 chrII 801650 . C A 2770 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.01;FS=0.000;HaplotypeScore=10.0255;MLEAC=2;MLEAF=1.00;MQ=33.39;MQ0=0;QD=9.82;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,278:280:99:2803,306,0 chrII 801782 . C T 3311.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.210;DP=349;Dels=0.00;FS=13.968;HaplotypeScore=32.4792;MLEAC=1;MLEAF=0.500;MQ=43.64;MQ0=0;MQRankSum=1.780;QD=9.49;ReadPosRankSum=-1.172;SB=-1.404e+03 GT:AD:DP:GQ:PL 0/1:171,176:349:99:3311,0,2302 chrII 802257 . C T 1502.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572;DP=183;Dels=0.00;FS=12.513;HaplotypeScore=9.5760;MLEAC=1;MLEAF=0.500;MQ=57.55;MQ0=0;MQRankSum=-1.927;QD=8.21;ReadPosRankSum=-1.214;SB=-6.150e+02 GT:AD:DP:GQ:PL 0/1:94,88:183:99:1532,0,1625 chrII 802259 . G T 1408.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.235;DP=181;Dels=0.00;FS=9.618;HaplotypeScore=8.7873;MLEAC=1;MLEAF=0.500;MQ=57.52;MQ0=0;MQRankSum=-1.378;QD=7.78;ReadPosRankSum=-1.610;SB=-5.420e+02 GT:AD:DP:GQ:PL 0/1:91,86:181:99:1438,0,1621 chrII 802607 . G A 2139 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2172,234,0 chrII 804707 . A G 2932.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.364;DP=327;Dels=0.00;FS=0.399;HaplotypeScore=24.9607;MLEAC=1;MLEAF=0.500;MQ=59.91;MQ0=0;MQRankSum=0.934;QD=8.97;ReadPosRankSum=-1.417;SB=-1.641e+03 GT:AD:DP:GQ:PL 0/1:166,160:327:99:2962,0,3354 chrII 805115 . C T 3684.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.9699;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=16;MQRankSum=-1.679;QD=17.30;ReadPosRankSum=1.537;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:3684,408,0 chrII 805343 . A T 4741.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.137;DP=216;Dels=0.00;FS=30.387;HaplotypeScore=19.0443;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=12;MQRankSum=-2.717;QD=21.95;ReadPosRankSum=4.417;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:7,209:216:99:4741,507,0 chrII 805905 . T C 169.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=11.64;MQ0=168;MQRankSum=0.046;QD=0.76;ReadPosRankSum=0.468;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,104:223:99:199,0,118 chrII 807206 . A G 1561 filter AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=20.15;MQ0=39;QD=9.64;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:1,160:162:99:1594,177,0 chrII 807670 . G A 3346.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.916;DP=349;Dels=0.00;FS=1.804;HaplotypeScore=19.2716;MLEAC=1;MLEAF=0.500;MQ=46.12;MQ0=6;MQRankSum=2.589;QD=9.59;ReadPosRankSum=-1.338;SB=-1.511e+03 GT:AD:DP:GQ:PL 0/1:176,172:349:99:3346,0,3047 chrII 807759 . A G 4451.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.624;DP=463;Dels=0.00;FS=6.082;HaplotypeScore=34.1377;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=-0.280;QD=9.61;ReadPosRankSum=0.482;SB=-1.980e+03 GT:AD:DP:GQ:PL 0/1:219,241:463:99:4451,0,3695 chrII 808294 . C T 1105.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.754;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.4972;MLEAC=1;MLEAF=0.500;MQ=60.93;MQ0=0;MQRankSum=-3.368;QD=6.42;ReadPosRankSum=-0.930;SB=-1.640e+02 GT:AD:DP:GQ:PL 0/1:88,84:172:99:1135,0,1407 chrII 809220 . T C 6706.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=7.4850;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=19;MQRankSum=0.054;QD=24.39;ReadPosRankSum=1.691;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,272:275:99:6706,724,0 chrII 809785 . G T 895.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.481;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=41.0617;MLEAC=1;MLEAF=0.500;MQ=31.39;MQ0=7;MQRankSum=-0.635;QD=6.78;ReadPosRankSum=0.185;SB=-2.140e+02 GT:AD:DP:GQ:PL 0/1:59,71:132:99:925,0,719 chrII 810077 . T C 2050.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;DP=431;Dels=0.00;FS=213.027;HaplotypeScore=6.5111;MLEAC=1;MLEAF=0.500;MQ=33.54;MQ0=39;MQRankSum=-9.010;QD=4.76;ReadPosRankSum=-1.105;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:276,155:431:99:2080,0,4360 chrII 810159 . C T 472.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.884;DP=294;Dels=0.00;FS=22.394;HaplotypeScore=11.0415;MLEAC=1;MLEAF=0.500;MQ=43.99;MQ0=2;MQRankSum=-4.644;QD=1.61;ReadPosRankSum=-3.442;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:246,48:294:99:502,0,3881 chrII 810163 . G A 675.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.016;DP=307;Dels=0.00;FS=20.701;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=43.31;MQ0=2;MQRankSum=-3.673;QD=2.20;ReadPosRankSum=-3.693;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:248,59:307:99:705,0,3882 chrII 810165 . G A 678.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.344;DP=316;Dels=0.00;FS=17.594;HaplotypeScore=9.5422;MLEAC=1;MLEAF=0.500;MQ=42.91;MQ0=2;MQRankSum=-4.098;QD=2.15;ReadPosRankSum=-4.051;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:248,67:316:99:708,0,3716 chrII 810219 . C A 1743.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;DP=515;Dels=0.00;FS=0.000;HaplotypeScore=246.8047;MLEAC=1;MLEAF=0.500;MQ=36.23;MQ0=6;MQRankSum=-0.652;QD=3.38;ReadPosRankSum=-0.011;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:388,127:515:99:1773,0,6132 chrII 810286 . A T 907.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.756;DP=342;Dels=0.00;FS=5.672;HaplotypeScore=28.2831;MLEAC=1;MLEAF=0.500;MQ=31.48;MQ0=15;MQRankSum=4.015;QD=2.65;ReadPosRankSum=-1.115;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:258,84:342:99:937,0,4044 chrII 810340 . C T 782 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.1617;MLEAC=2;MLEAF=1.00;MQ=20.27;MQ0=38;QD=7.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:30,76:110:87:815,87,0 chrII 810344 . A G 744 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.683;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=20.10;MQ0=37;MQRankSum=-1.454;QD=7.22;ReadPosRankSum=3.683;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:39,63:103:84:777,84,0 chrII 810350 . A G 561 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=17.83;MQ0=38;MQRankSum=-1.102;QD=5.97;ReadPosRankSum=1.669;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:39,54:94:69:594,69,0 chrII 810351 . G A 616 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=17.58;MQ0=39;MQRankSum=1.669;QD=6.55;ReadPosRankSum=1.669;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:38,54:93:69:649,69,0 chrII 810353 . A T 658 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=17.58;MQ0=39;QD=7.00;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:38,56:94:72:691,72,0 chrII 810363 . G A 430 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=14.90;MQ0=44;QD=4.39;SB=-6.584e-03 GT:AD:DP:GQ:PL 1/1:42,56:98:51:463,51,0 chrII 810373 . C T 389.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.843;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.37;MQ0=45;MQRankSum=2.263;QD=3.70;ReadPosRankSum=0.902;SB=0.195 GT:AD:DP:GQ:PL 1/1:75,30:105:29:422,29,0 chrII 810394 . T C 150.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=11.66;MQ0=49;MQRankSum=-1.567;QD=1.42;ReadPosRankSum=1.790;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:60,46:106:21:183,21,0 chrII 810411 . G A 175.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=10.89;MQ0=47;QD=1.84;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:46,49:95:24:208,24,0 chrII 810414 . A G 95.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=10.55;MQ0=47;QD=0.99;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:46,50:96:15:128,15,0 chrII 810417 . G C 78.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=10.55;MQ0=47;QD=0.82;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:46,50:96:12:111,12,0 chrII 810420 . A G 122.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.19;MQ0=50;QD=1.17;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:46,56:104:18:155,18,0 chrII 810461 . T C 574 filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.12;MQ0=49;QD=5.17;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:46,65:111:66:607,66,0 chrII 810487 . G A 388.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.904;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=14.93;MQ0=83;MQRankSum=3.869;QD=2.85;ReadPosRankSum=-0.920;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,35:136:99:418,0,154 chrII 810491 . A T 312.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.552;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.51;MQ0=88;MQRankSum=3.919;QD=2.23;ReadPosRankSum=-0.854;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,38:140:99:342,0,163 chrII 810508 . C A 66.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=1;MLEAF=0.500;MQ=12.79;MQ0=95;MQRankSum=1.136;QD=0.49;ReadPosRankSum=1.018;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,15:135:96:96,0,346 chrII 810515 . G A 433 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=11.99;MQ0=94;QD=3.41;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:63,64:127:51:466,51,0 chrIII 160 . A C 155.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.163;DP=220;Dels=0.02;FS=2.944;HaplotypeScore=85.7501;MLEAC=1;MLEAF=0.500;MQ=23.75;MQ0=21;MQRankSum=-1.173;QD=0.70;ReadPosRankSum=0.503;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:142,73:216:99:185,0,1068 chrIII 233 . C A 537.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.676;DP=314;Dels=0.02;FS=0.000;HaplotypeScore=264.0354;MLEAC=1;MLEAF=0.500;MQ=22.41;MQ0=29;MQRankSum=0.939;QD=1.71;ReadPosRankSum=0.070;SB=-4.190e+02 GT:AD:DP:GQ:PL 0/1:203,105:309:99:567,0,290 chrIII 388 . T A 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.559;DP=279;Dels=0.00;FS=255.485;HaplotypeScore=287.1209;MLEAC=1;MLEAF=0.500;MQ=23.81;MQ0=0;MQRankSum=-2.554;QD=0.07;ReadPosRankSum=1.463;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:36,224:279:49:49,0,52 chrIII 391 . T C 59.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.581;DP=273;Dels=0.00;FS=216.285;HaplotypeScore=304.8418;MLEAC=1;MLEAF=0.500;MQ=23.84;MQ0=0;MQRankSum=-2.067;QD=0.22;ReadPosRankSum=1.085;SB=-3.690e+02 GT:AD:DP:GQ:PL 0/1:34,237:273:57:89,0,57 chrIII 414 . C A 136.04 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.948;DP=221;Dels=0.00;FS=90.213;HaplotypeScore=225.5336;MLEAC=1;MLEAF=0.500;MQ=22.42;MQ0=0;MQRankSum=-2.597;QD=0.62;ReadPosRankSum=2.333;SB=-4.250e+02 GT:AD:DP:GQ:PL 0/1:17,195:221:23:166,0,23 chrIII 418 . T C 134.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.157;DP=215;Dels=0.00;FS=256.384;HaplotypeScore=94.3176;MLEAC=1;MLEAF=0.500;MQ=22.33;MQ0=0;MQRankSum=3.315;QD=0.62;ReadPosRankSum=-0.881;SB=-6.533e-03 GT:AD:DP:GQ:PL 0/1:171,35:215:52:164,0,52 chrIII 422 . T C 323 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=203;Dels=0.00;FS=26.974;HaplotypeScore=116.9711;MLEAC=2;MLEAF=1.00;MQ=22.16;MQ0=0;MQRankSum=-1.344;QD=1.59;ReadPosRankSum=3.909;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:9,194:203:36:356,36,0 chrIII 440 . T A 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.732;DP=165;Dels=0.00;FS=163.092;HaplotypeScore=57.0653;MLEAC=1;MLEAF=0.500;MQ=21.82;MQ0=3;MQRankSum=-3.091;QD=0.13;ReadPosRankSum=2.116;SB=-1.150e+02 GT:AD:DP:GQ:PL 0/1:40,112:165:52:52,0,250 chrIII 458 . T C 390.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;DP=143;Dels=0.00;FS=4.659;HaplotypeScore=105.8970;MLEAC=1;MLEAF=0.500;MQ=22.17;MQ0=3;MQRankSum=0.747;QD=2.73;ReadPosRankSum=1.914;SB=-3.300e+02 GT:AD:DP:GQ:PL 0/1:41,102:143:99:420,0,165 chrIII 461 . T C 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;DP=145;Dels=0.00;FS=113.169;HaplotypeScore=110.4588;MLEAC=1;MLEAF=0.500;MQ=22.19;MQ0=3;MQRankSum=-3.929;QD=0.15;ReadPosRankSum=-2.260;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:74,71:145:52:52,0,388 chrIII 468 . G A 841 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.209;DP=148;Dels=0.00;FS=3.235;HaplotypeScore=101.4220;MLEAC=2;MLEAF=1.00;MQ=23.23;MQ0=4;MQRankSum=-0.012;QD=5.68;ReadPosRankSum=-1.433;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,143:148:82:874,82,0 chrIII 632 . C T 316.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.108;DP=379;Dels=0.00;FS=455.865;HaplotypeScore=41.4462;MLEAC=1;MLEAF=0.500;MQ=21.06;MQ0=23;MQRankSum=-2.419;QD=0.83;ReadPosRankSum=1.157;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:226,152:379:99:346,0,663 chrIII 633 . T A 316.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;DP=384;Dels=0.00;FS=381.747;HaplotypeScore=43.0236;MLEAC=1;MLEAF=0.500;MQ=21.15;MQ0=23;MQRankSum=-2.320;QD=0.82;ReadPosRankSum=1.218;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:228,156:384:99:346,0,589 chrIII 656 . C T 805.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.206;DP=340;Dels=0.00;FS=265.551;HaplotypeScore=47.9177;MLEAC=1;MLEAF=0.500;MQ=23.82;MQ0=16;MQRankSum=3.967;QD=2.37;ReadPosRankSum=5.032;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:174,163:340:99:835,0,455 chrIII 658 . T C 1429 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.726;DP=338;Dels=0.00;FS=4.924;HaplotypeScore=56.7441;MLEAC=2;MLEAF=1.00;MQ=23.89;MQ0=16;MQRankSum=-0.154;QD=4.23;ReadPosRankSum=3.578;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:28,305:338:70:1462,70,0 chrIII 666 . T C 1791 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.419;DP=327;Dels=0.01;FS=2.223;HaplotypeScore=46.2160;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=16;MQRankSum=-1.428;QD=5.48;ReadPosRankSum=4.489;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:16,302:324:99:1824,189,0 chrIII 681 . C A 113.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.958;DP=327;Dels=0.00;FS=56.449;HaplotypeScore=424.2504;MLEAC=1;MLEAF=0.500;MQ=26.50;MQ0=14;MQRankSum=2.462;QD=0.35;ReadPosRankSum=-1.787;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:305,21:327:99:143,0,323 chrIII 686 . T C 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.829;DP=335;Dels=0.00;FS=80.383;HaplotypeScore=532.0944;MLEAC=1;MLEAF=0.500;MQ=26.58;MQ0=12;MQRankSum=1.053;QD=0.05;ReadPosRankSum=5.466;SB=-8.780e+02 GT:AD:DP:GQ:PL 0/1:205,130:335:47:47,0,1423 chrIII 700 . C G 218.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DP=458;Dels=0.00;FS=23.085;HaplotypeScore=267.3277;MLEAC=1;MLEAF=0.500;MQ=28.33;MQ0=9;MQRankSum=-2.583;QD=0.48;ReadPosRankSum=6.646;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:396,58:457:99:248,0,1581 chrIII 701 . T C 222.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.677;DP=461;Dels=0.00;FS=14.651;HaplotypeScore=271.7757;MLEAC=1;MLEAF=0.500;MQ=28.41;MQ0=9;MQRankSum=-2.444;QD=0.48;ReadPosRankSum=7.105;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:399,61:461:99:252,0,1677 chrIII 704 . C T 182.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;DP=465;Dels=0.00;FS=34.287;HaplotypeScore=274.6945;MLEAC=1;MLEAF=0.500;MQ=28.63;MQ0=6;MQRankSum=-2.814;QD=0.39;ReadPosRankSum=6.769;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:402,63:465:99:212,0,1875 chrIII 706 . T A,C 1533.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.713;DP=451;Dels=0.00;FS=12.040;HaplotypeScore=56.4724;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.81;MQ0=6;MQRankSum=-1.361;QD=3.40;ReadPosRankSum=7.943;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/2:167,215,69:451:99:1593,129,315,1149,0,1442 chrIII 717 . T A 1396.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;DP=421;Dels=0.00;FS=111.351;HaplotypeScore=562.9684;MLEAC=1;MLEAF=0.500;MQ=30.06;MQ0=5;MQRankSum=-0.165;QD=3.32;ReadPosRankSum=-2.005;SB=-1.658e+03 GT:AD:DP:GQ:PL 0/1:122,231:421:99:1426,0,1064 chrIII 724 . G T 1139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.943;DP=426;Dels=0.00;FS=264.338;HaplotypeScore=297.1939;MLEAC=1;MLEAF=0.500;MQ=30.58;MQ0=6;MQRankSum=-1.672;QD=2.67;ReadPosRankSum=-0.006;SB=-1.228e+03 GT:AD:DP:GQ:PL 0/1:204,222:426:99:1169,0,1498 chrIII 776 . T C 195.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;DP=668;Dels=0.00;FS=4.561;HaplotypeScore=93.3291;MLEAC=1;MLEAF=0.500;MQ=35.48;MQ0=5;MQRankSum=-1.491;QD=0.29;ReadPosRankSum=2.839;SB=-3.350e+02 GT:AD:DP:GQ:PL 0/1:568,98:668:99:225,0,7130 chrIII 822 . C T 4252.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.959;DP=761;Dels=0.00;FS=141.163;HaplotypeScore=253.5906;MLEAC=1;MLEAF=0.500;MQ=33.40;MQ0=33;MQRankSum=2.738;QD=5.59;ReadPosRankSum=-1.574;SB=-2.259e+03 GT:AD:DP:GQ:PL 0/1:386,372:761:99:4252,0,4491 chrIII 870 . G C 956.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.570;DP=760;Dels=0.00;FS=104.011;HaplotypeScore=59.2184;MLEAC=1;MLEAF=0.500;MQ=30.90;MQ0=40;MQRankSum=0.345;QD=1.26;ReadPosRankSum=-0.134;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:604,149:760:99:986,0,8413 chrIII 951 . C T 4810.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.047;DP=521;Dels=0.00;FS=11.094;HaplotypeScore=59.3344;MLEAC=1;MLEAF=0.500;MQ=34.20;MQ0=20;MQRankSum=1.339;QD=9.23;ReadPosRankSum=3.354;SB=-1.870e+03 GT:AD:DP:GQ:PL 0/1:248,270:521:99:4810,0,3004 chrIII 978 . A G 1613.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.835;DP=558;Dels=0.00;FS=13.624;HaplotypeScore=39.5889;MLEAC=1;MLEAF=0.500;MQ=37.07;MQ0=20;MQRankSum=-7.556;QD=2.89;ReadPosRankSum=-1.367;SB=-5.880e+02 GT:AD:DP:GQ:PL 0/1:335,222:558:99:1643,0,6047 chrIII 1016 . T C 185.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.431;DP=613;Dels=0.00;FS=182.133;HaplotypeScore=236.1035;MLEAC=1;MLEAF=0.500;MQ=36.54;MQ0=16;MQRankSum=-1.433;QD=0.30;ReadPosRankSum=-3.884;SB=-1.420e+02 GT:AD:DP:GQ:PL 0/1:496,113:613:99:215,0,7160 chrIII 1023 . A T 1411.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;DP=599;Dels=0.00;FS=19.983;HaplotypeScore=240.7083;MLEAC=1;MLEAF=0.500;MQ=36.67;MQ0=16;MQRankSum=-6.374;QD=2.36;ReadPosRankSum=0.709;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:402,197:599:99:1441,0,4869 chrIII 1028 . C A 1262.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.828;DP=562;Dels=0.00;FS=102.518;HaplotypeScore=253.7540;MLEAC=1;MLEAF=0.500;MQ=36.10;MQ0=18;MQRankSum=-5.418;QD=2.25;ReadPosRankSum=3.503;SB=-1.311e+03 GT:AD:DP:GQ:PL 0/1:273,279:562:99:1292,0,3818 chrIII 1034 . C T 2734.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.789;DP=564;Dels=0.00;FS=18.842;HaplotypeScore=237.7069;MLEAC=1;MLEAF=0.500;MQ=36.10;MQ0=20;MQRankSum=-3.699;QD=4.85;ReadPosRankSum=4.111;SB=-1.072e+03 GT:AD:DP:GQ:PL 0/1:281,282:564:99:2764,0,2868 chrIII 1040 . T C 2845.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.296;DP=564;Dels=0.00;FS=127.742;HaplotypeScore=33.3749;MLEAC=1;MLEAF=0.500;MQ=35.99;MQ0=19;MQRankSum=4.049;QD=5.04;ReadPosRankSum=-3.147;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:323,237:564:99:2875,0,2910 chrIII 1069 . C T 896.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;DP=448;Dels=0.03;FS=132.762;HaplotypeScore=286.2387;MLEAC=1;MLEAF=0.500;MQ=32.50;MQ0=27;MQRankSum=1.026;QD=2.00;ReadPosRankSum=-2.052;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:331,99:434:99:926,0,1799 chrIII 1070 . T C 923.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;DP=446;Dels=0.00;FS=134.640;HaplotypeScore=283.8726;MLEAC=1;MLEAF=0.500;MQ=32.17;MQ0=27;MQRankSum=1.361;QD=2.07;ReadPosRankSum=-1.507;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:346,100:446:99:953,0,1857 chrIII 1093 . C T 90.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;DP=442;Dels=0.00;FS=79.016;HaplotypeScore=53.5303;MLEAC=1;MLEAF=0.500;MQ=32.42;MQ0=27;MQRankSum=-0.982;QD=0.20;ReadPosRankSum=4.348;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:405,37:442:99:120,0,3693 chrIII 1095 . C T 1102.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.580;DP=399;Dels=0.00;FS=648.397;HaplotypeScore=56.1043;MLEAC=1;MLEAF=0.500;MQ=33.14;MQ0=24;MQRankSum=1.288;QD=2.76;ReadPosRankSum=3.218;SB=-4.140e+02 GT:AD:DP:GQ:PL 0/1:241,158:399:99:1132,0,2757 chrIII 1097 . C G 1082.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.860;DP=399;Dels=0.00;FS=646.705;HaplotypeScore=58.8542;MLEAC=1;MLEAF=0.500;MQ=32.95;MQ0=24;MQRankSum=-0.134;QD=2.71;ReadPosRankSum=4.130;SB=-4.060e+02 GT:AD:DP:GQ:PL 0/1:240,158:399:99:1112,0,2633 chrIII 1099 . A C 1114.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;DP=397;Dels=0.00;FS=645.007;HaplotypeScore=137.1965;MLEAC=1;MLEAF=0.500;MQ=32.84;MQ0=24;MQRankSum=-0.301;QD=2.81;ReadPosRankSum=4.999;SB=-4.750e+02 GT:AD:DP:GQ:PL 0/1:239,158:397:99:1144,0,2549 chrIII 1108 . C G 1124.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;DP=406;Dels=0.00;FS=709.861;HaplotypeScore=149.6391;MLEAC=1;MLEAF=0.500;MQ=30.89;MQ0=21;MQRankSum=1.046;QD=2.77;ReadPosRankSum=2.618;SB=-4.710e+02 GT:AD:DP:GQ:PL 0/1:210,193:405:99:1154,0,2215 chrIII 1109 . T A 2447.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.673;DP=405;Dels=0.00;FS=223.349;HaplotypeScore=140.6399;MLEAC=1;MLEAF=0.500;MQ=30.73;MQ0=21;MQRankSum=1.223;QD=6.04;ReadPosRankSum=-0.137;SB=-2.561e+03 GT:AD:DP:GQ:PL 0/1:107,298:405:99:2477,0,745 chrIII 1111 . T C 192.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;DP=420;Dels=0.00;FS=95.180;HaplotypeScore=140.4079;MLEAC=1;MLEAF=0.500;MQ=30.51;MQ0=21;MQRankSum=-2.263;QD=0.46;ReadPosRankSum=3.717;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:382,37:420:99:222,0,2581 chrIII 1114 . C T 1190.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.220;DP=420;Dels=0.01;FS=686.925;HaplotypeScore=283.4419;MLEAC=1;MLEAF=0.500;MQ=30.22;MQ0=21;MQRankSum=3.607;QD=2.83;ReadPosRankSum=2.013;SB=-6.270e+02 GT:AD:DP:GQ:PL 0/1:193,216:415:99:1220,0,1807 chrIII 1116 . C T 1395.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;DP=413;Dels=0.00;FS=676.034;HaplotypeScore=227.9032;MLEAC=1;MLEAF=0.500;MQ=29.49;MQ0=21;MQRankSum=1.122;QD=3.38;ReadPosRankSum=2.414;SB=-7.530e+02 GT:AD:DP:GQ:PL 0/1:193,217:412:99:1425,0,1979 chrIII 1121 . A G 1440.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;DP=435;Dels=0.00;FS=624.593;HaplotypeScore=157.9964;MLEAC=1;MLEAF=0.500;MQ=29.36;MQ0=20;MQRankSum=3.194;QD=3.31;ReadPosRankSum=1.120;SB=-1.084e+03 GT:AD:DP:GQ:PL 0/1:184,251:435:99:1470,0,1964 chrIII 1122 . C T 845.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.571;DP=432;Dels=0.00;FS=257.392;HaplotypeScore=217.5705;MLEAC=1;MLEAF=0.500;MQ=29.49;MQ0=18;MQRankSum=0.058;QD=1.96;ReadPosRankSum=-1.406;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:339,92:432:99:875,0,2467 chrIII 1123 . G A 217.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.100;DP=439;Dels=0.00;FS=150.982;HaplotypeScore=222.3827;MLEAC=1;MLEAF=0.500;MQ=30.17;MQ0=18;MQRankSum=-0.362;QD=0.49;ReadPosRankSum=-1.145;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:381,52:439:99:247,0,3125 chrIII 1132 . G T 3029.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.241;DP=446;Dels=0.00;FS=390.244;HaplotypeScore=169.4914;MLEAC=1;MLEAF=0.500;MQ=31.90;MQ0=17;MQRankSum=4.544;QD=6.79;ReadPosRankSum=1.527;SB=-2.586e+03 GT:AD:DP:GQ:PL 0/1:125,319:446:99:3059,0,634 chrIII 1607 . G A 3729.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;DP=437;Dels=0.00;FS=3.594;HaplotypeScore=26.5577;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=-0.538;QD=8.53;ReadPosRankSum=-0.766;SB=-1.842e+03 GT:AD:DP:GQ:PL 0/1:235,201:437:99:3729,0,4758 chrIII 1933 . C T 2346.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.404;DP=281;Dels=0.00;FS=2.014;HaplotypeScore=32.1716;MLEAC=1;MLEAF=0.500;MQ=59.79;MQ0=0;MQRankSum=-0.404;QD=8.35;ReadPosRankSum=-0.186;SB=-1.440e+03 GT:AD:DP:GQ:PL 0/1:140,138:281:99:2376,0,2295 chrIII 2339 . C G 3651.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.047;DP=355;Dels=0.00;FS=4.086;HaplotypeScore=26.4251;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=-0.423;QD=10.28;ReadPosRankSum=0.300;SB=-2.205e+03 GT:AD:DP:GQ:PL 0/1:156,196:355:99:3651,0,2809 chrIII 2869 . A G 10639.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=450;Dels=0.00;FS=3.219;HaplotypeScore=25.3623;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.810;QD=23.64;ReadPosRankSum=1.724;SB=-5.965e+03 GT:AD:DP:GQ:PL 1/1:1,447:450:99:10639,1073,0 chrIII 2926 . G A 3880.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.114;DP=432;Dels=0.00;FS=3.014;HaplotypeScore=18.1056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.201;QD=8.98;ReadPosRankSum=-2.196;SB=-2.306e+03 GT:AD:DP:GQ:PL 0/1:223,206:432:99:3880,0,4304 chrIII 2959 . G C 3299.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.928;DP=391;Dels=0.00;FS=0.767;HaplotypeScore=33.7107;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=-0.063;QD=8.44;ReadPosRankSum=2.693;SB=-1.832e+03 GT:AD:DP:GQ:PL 0/1:202,184:391:99:3299,0,3827 chrIII 3040 . T C 3826.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.870;DP=481;Dels=0.00;FS=0.000;HaplotypeScore=33.7656;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=-0.118;QD=7.95;ReadPosRankSum=0.768;SB=-2.158e+03 GT:AD:DP:GQ:PL 0/1:269,212:481:99:3826,0,5116 chrIII 3072 . C A 4150.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.704;DP=494;Dels=0.00;FS=1.047;HaplotypeScore=23.5979;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=-1.091;QD=8.40;ReadPosRankSum=-0.161;SB=-2.459e+03 GT:AD:DP:GQ:PL 0/1:269,223:494:99:4150,0,5368 chrIII 3240 . C T 2397.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.641;DP=352;Dels=0.00;FS=4.390;HaplotypeScore=18.1261;MLEAC=1;MLEAF=0.500;MQ=59.27;MQ0=0;MQRankSum=-0.776;QD=6.81;ReadPosRankSum=-0.494;SB=-9.180e+02 GT:AD:DP:GQ:PL 0/1:199,152:352:99:2427,0,3908 chrIII 3939 . C T 8252.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=17.1149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-3.760e+03 GT:AD:DP:GQ:PL 1/1:0,327:332:99:8252,856,0 chrIII 4053 . C T 3446.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.854;DP=321;Dels=0.00;FS=1.359;HaplotypeScore=28.0022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.113;QD=10.74;ReadPosRankSum=0.500;SB=-1.595e+03 GT:AD:DP:GQ:PL 0/1:155,163:321:99:3446,0,3032 chrIII 4489 . T C 4006.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=23.43;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4006,406,0 chrIII 4490 . T C 4142.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=23.80;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4142,421,0 chrIII 4607 . G T 1541.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.199;DP=153;Dels=0.00;FS=1.265;HaplotypeScore=11.9791;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=-1.087;QD=10.07;ReadPosRankSum=-0.065;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:66,86:153:99:1571,0,1334 chrIII 5961 . G T 1865.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.174;DP=219;Dels=0.00;FS=5.991;HaplotypeScore=15.9638;MLEAC=1;MLEAF=0.500;MQ=30.27;MQ0=20;MQRankSum=-1.660;QD=8.52;ReadPosRankSum=1.708;SB=-4.160e+02 GT:AD:DP:GQ:PL 0/1:113,104:219:99:1895,0,1814 chrIII 5983 . C T 911.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.421;DP=133;Dels=0.00;FS=7.064;HaplotypeScore=15.1697;MLEAC=1;MLEAF=0.500;MQ=29.35;MQ0=17;MQRankSum=-0.968;QD=6.85;ReadPosRankSum=0.474;SB=-4.770e+02 GT:AD:DP:GQ:PL 0/1:61,71:133:99:941,0,1035 chrIII 6009 . C T 1879 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=69.9399;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=8;QD=15.66;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1912,189,0 chrIII 6078 . G T 7172.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=22.7960;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=22.34;SB=-3.445e+03 GT:AD:DP:GQ:PL 1/1:0,321:321:99:7172,774,0 chrIII 6190 . C T 3211.99 filter AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=32.21;MQ0=4;QD=19.23;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3245,339,0 chrIII 7849 . A G 6362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=259;Dels=0.00;FS=9.032;HaplotypeScore=13.5220;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=1;MQRankSum=2.063;QD=24.56;ReadPosRankSum=3.393;SB=-3.398e+03 GT:AD:DP:GQ:PL 1/1:4,255:259:99:6362,655,0 chrIII 7958 . T C 6367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=18.4339;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=3;MQRankSum=-0.173;QD=24.12;ReadPosRankSum=1.719;SB=-3.065e+03 GT:AD:DP:GQ:PL 1/1:1,262:264:99:6367,655,0 chrIII 8254 . G A 1296.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;DP=222;Dels=0.00;FS=19.877;HaplotypeScore=11.0303;MLEAC=1;MLEAF=0.500;MQ=26.76;MQ0=15;MQRankSum=0.956;QD=5.84;ReadPosRankSum=-0.287;SB=-2.650e+02 GT:AD:DP:GQ:PL 0/1:117,105:222:99:1326,0,1403 chrIII 8528 . T C 1173.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.474;DP=131;Dels=0.00;FS=6.645;HaplotypeScore=5.7254;MLEAC=1;MLEAF=0.500;MQ=51.44;MQ0=1;MQRankSum=-4.186;QD=8.95;ReadPosRankSum=0.512;SB=-2.440e+02 GT:AD:DP:GQ:PL 0/1:65,66:131:99:1203,0,1340 chrIII 8572 . T C 586.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.389;DP=108;Dels=0.01;FS=4.473;HaplotypeScore=84.7722;MLEAC=1;MLEAF=0.500;MQ=49.41;MQ0=8;MQRankSum=-4.618;QD=5.43;ReadPosRankSum=-0.444;SB=-1.420e+02 GT:AD:DP:GQ:PL 0/1:55,51:107:99:616,0,1159 chrIII 8685 . C T 1608.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.958;DP=274;Dels=0.00;FS=12.102;HaplotypeScore=7.8756;MLEAC=1;MLEAF=0.500;MQ=46.55;MQ0=2;MQRankSum=-9.306;QD=5.87;ReadPosRankSum=1.082;SB=-9.830e+02 GT:AD:DP:GQ:PL 0/1:152,120:274:99:1638,0,3334 chrIII 8696 . G A 1417.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.780;DP=255;Dels=0.00;FS=10.766;HaplotypeScore=14.2397;MLEAC=1;MLEAF=0.500;MQ=44.37;MQ0=3;MQRankSum=-10.416;QD=5.56;ReadPosRankSum=1.706;SB=-8.840e+02 GT:AD:DP:GQ:PL 0/1:136,117:255:99:1447,0,2864 chrIII 8743 . C T 2361.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;DP=253;Dels=0.00;FS=9.373;HaplotypeScore=10.6946;MLEAC=1;MLEAF=0.500;MQ=50.63;MQ0=3;MQRankSum=-3.453;QD=9.33;ReadPosRankSum=-0.315;SB=-9.060e+02 GT:AD:DP:GQ:PL 0/1:117,135:253:99:2391,0,2315 chrIII 8947 . T G 1860.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.215;DP=288;Dels=0.00;FS=6.615;HaplotypeScore=19.9383;MLEAC=1;MLEAF=0.500;MQ=48.46;MQ0=4;MQRankSum=-4.506;QD=6.46;ReadPosRankSum=0.071;SB=-7.910e+02 GT:AD:DP:GQ:PL 0/1:162,125:288:99:1890,0,3291 chrIII 9136 . G A 367.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;DP=116;Dels=0.00;FS=2.513;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=48.04;MQ0=6;MQRankSum=-7.015;QD=3.16;ReadPosRankSum=-1.479;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:66,49:116:99:397,0,1196 chrIII 9265 . G A 535.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.243;DP=117;Dels=0.00;FS=18.722;HaplotypeScore=11.3002;MLEAC=1;MLEAF=0.500;MQ=37.15;MQ0=8;MQRankSum=0.366;QD=4.57;ReadPosRankSum=2.859;SB=-1.260e+02 GT:AD:DP:GQ:PL 0/1:71,42:117:99:565,0,1681 chrIII 9461 . G T 1775 filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.36;MQ0=37;QD=15.17;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1808,195,0 chrIII 9739 . A G 7909.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.470;DP=391;Dels=0.00;FS=33.671;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=45;MQRankSum=-2.173;QD=20.23;ReadPosRankSum=4.508;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:7,383:391:99:7909,847,0 chrIII 10243 . G C 2334.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.503;DP=236;Dels=0.00;FS=1.602;HaplotypeScore=18.8736;MLEAC=1;MLEAF=0.500;MQ=31.44;MQ0=0;MQRankSum=-1.695;QD=9.89;ReadPosRankSum=1.895;SB=-1.270e+03 GT:AD:DP:GQ:PL 0/1:108,119:236:99:2364,0,1933 chrIII 10635 . G T 351.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;DP=220;Dels=0.00;FS=43.741;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=14.34;MQ0=96;MQRankSum=-1.500;QD=1.60;ReadPosRankSum=-0.430;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,99:220:99:381,0,834 chrIII 11028 . A C 2432.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;DP=227;Dels=0.00;FS=71.868;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=42.18;MQ0=19;MQRankSum=0.030;QD=10.71;ReadPosRankSum=-0.927;SB=-1.291e+03 GT:AD:DP:GQ:PL 0/1:96,131:227:99:2462,0,1568 chrIII 11126 . T C 1526.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.789;DP=112;Dels=0.00;FS=51.659;HaplotypeScore=7.2989;MLEAC=1;MLEAF=0.500;MQ=43.43;MQ0=8;MQRankSum=1.403;QD=13.63;ReadPosRankSum=-1.004;SB=-6.660e+02 GT:AD:DP:GQ:PL 0/1:41,71:112:99:1556,0,486 chrIII 11201 . T C 2247 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.652;DP=106;Dels=0.00;FS=6.063;HaplotypeScore=8.4846;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=13;MQRankSum=2.922;QD=21.20;ReadPosRankSum=1.933;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:13,90:106:99:2280,231,0 chrIII 11775 . G T 401 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.456;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=4.1796;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;MQRankSum=1.595;QD=16.04;ReadPosRankSum=1.456;SB=-7.066e-03 GT:AD:DP:GQ:PL 1/1:1,24:25:42:434,42,0 chrIII 14139 . G T 2402 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=24.26;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2435,246,0 chrIII 14191 . G A 2311 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=24.59;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2344,231,0 chrIII 14356 . A T 829 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.84;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:862,93,0 chrIII 14631 . T A 1662 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4485;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.81;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1695,168,0 chrIII 15512 . A G 3878.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.5903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3878,423,0 chrIII 16356 . G A 3717.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.66;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3717,390,0 chrIII 17481 . T A 5975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=262;Dels=0.00;FS=3.559;HaplotypeScore=16.4047;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.803;QD=22.81;ReadPosRankSum=1.692;SB=-3.072e+03 GT:AD:DP:GQ:PL 1/1:1,260:262:99:5975,628,0 chrIII 17635 . C T 5895.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=20.7337;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.12;SB=-3.225e+03 GT:AD:DP:GQ:PL 1/1:0,250:255:99:5895,586,0 chrIII 18173 . G A 6259.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:6259,616,0 chrIII 18736 . G C 1276 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1309,138,0 chrIII 23149 . T C 3931.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.42;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3931,403,0 chrIII 23754 . A G 3889.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.77;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3889,405,0 chrIII 25689 . G A 4749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.416;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.516;QD=22.83;ReadPosRankSum=-0.017;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4749,479,0 chrIII 25808 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3511,343,0 chrIII 28423 . T A 4341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=175;Dels=0.00;FS=3.622;HaplotypeScore=10.8601;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.198;QD=24.81;ReadPosRankSum=1.712;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4341,459,0 chrIII 31409 . T C 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.398;QD=25.52;ReadPosRankSum=1.704;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:3172,322,0 chrIII 32816 . C T 5576.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.0782;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.93;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5576,574,0 chrIII 33284 . T A 3872.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.2631;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.81;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3872,388,0 chrIII 33569 . A C 4800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=205;Dels=0.00;FS=3.319;HaplotypeScore=18.1033;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.206;QD=23.41;ReadPosRankSum=1.698;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4800,499,0 chrIII 34008 . T C 2846 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.2921;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,117:121:99:2879,297,0 chrIII 34309 . C T 2685 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2718,274,0 chrIII 34434 . T C 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.169;QD=25.98;ReadPosRankSum=1.704;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:3255,336,0 chrIII 35941 . G T 4356.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.7094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4356,457,0 chrIII 37664 . A G 714 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:75:747,75,0 chrIII 38664 . A G 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.171;QD=23.76;ReadPosRankSum=1.708;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3422,346,0 chrIII 39540 . C A 1319 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.27;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1352,141,0 chrIII 40089 . G A 4435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.577;QD=22.74;ReadPosRankSum=-1.270;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4435,454,0 chrIII 40315 . G T 6718.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=17.4652;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.45;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:6718,697,0 chrIII 40376 . C T 4558.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.62;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4558,481,0 chrIII 43107 . T G 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=133;Dels=0.00;FS=2.587;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.023;QD=24.62;ReadPosRankSum=2.825;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:3275,337,0 chrIII 43835 . T G 3492.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=25.87;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3492,355,0 chrIII 43874 . G A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=24.04;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3390,352,0 chrIII 43877 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1940;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=23.71;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3509,358,0 chrIII 45881 . T C 5142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=16.9723;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.363;QD=25.08;ReadPosRankSum=1.715;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:5142,523,0 chrIII 46562 . T A 4307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=184;Dels=0.00;FS=6.334;HaplotypeScore=11.7775;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.208;QD=23.41;ReadPosRankSum=2.356;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4307,430,0 chrIII 48299 . G A 5125.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.63;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5125,511,0 chrIII 49221 . G A 6535.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=19.6187;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.94;SB=-3.752e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:6535,682,0 chrIII 49400 . C T 4902.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=20.6980;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=21.31;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:4902,496,0 chrIII 49436 . T C 6317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=280;Dels=0.00;FS=3.042;HaplotypeScore=16.7156;MLEAC=2;MLEAF=1.00;MQ=60.03;MQ0=0;MQRankSum=0.698;QD=22.56;ReadPosRankSum=1.707;SB=-3.754e+03 GT:AD:DP:GQ:PL 1/1:1,277:280:99:6317,652,0 chrIII 49571 . G A 7426.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=15.5004;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.34;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,291:293:99:7426,757,0 chrIII 49655 . G A 7216.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=18.9826;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.46;SB=-3.794e+03 GT:AD:DP:GQ:PL 1/1:0,294:295:99:7216,724,0 chrIII 49785 . A G 6293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.640;DP=271;Dels=0.00;FS=9.569;HaplotypeScore=23.2237;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=2.516;QD=23.22;ReadPosRankSum=4.778;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:8,262:271:99:6293,649,0 chrIII 50099 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.9354;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.30;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3265,328,0 chrIII 50269 . A G 2416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.004;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.414;QD=20.83;ReadPosRankSum=2.407;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2449,246,0 chrIII 50477 . T G 833 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=4.2980;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=26.03;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:87:866,87,0 chrIII 50543 . T A 424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=30.5726;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;MQRankSum=-1.191;QD=13.25;ReadPosRankSum=1.625;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:45:457,45,0 chrIII 50560 . C T 178.03 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=34.0150;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;QD=4.56;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,35:38:24:211,24,0 chrIII 50675 . T C 96.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.345;DP=109;Dels=0.00;FS=7.296;HaplotypeScore=99.9660;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-1.848;QD=0.88;ReadPosRankSum=4.271;SB=-8.813e+02 GT:AD:DP:GQ:PL 1/1:7,102:109:15:129,15,0 chrIII 50770 . C T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=14.5250;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=25.09;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3537,366,0 chrIII 50897 . G T 5751.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=24.68;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5751,595,0 chrIII 51119 . T C 5615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=248;Dels=0.00;FS=7.636;HaplotypeScore=19.0969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.255;QD=22.64;ReadPosRankSum=2.409;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:2,243:248:99:5615,565,0 chrIII 51419 . C T 9256.01 filter AC=2;AF=1.00;AN=2;DP=393;Dels=0.00;FS=0.000;HaplotypeScore=32.5823;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.55;SB=-5.237e+03 GT:AD:DP:GQ:PL 1/1:0,391:393:99:9256,964,0 chrIII 51491 . C T 7853.01 PASS AC=2;AF=1.00;AN=2;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=31.3233;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.44;SB=-3.299e+03 GT:AD:DP:GQ:PL 1/1:0,349:350:99:7853,835,0 chrIII 51650 . G A 8127.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=24.1958;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.26;SB=-3.970e+03 GT:AD:DP:GQ:PL 1/1:0,333:335:99:8127,812,0 chrIII 53724 . C T 5455.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=17.5412;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.57;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5455,547,0 chrIII 53891 . T C 8637.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=372;Dels=0.00;FS=2.499;HaplotypeScore=23.0258;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.057;QD=23.22;ReadPosRankSum=2.916;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:3,368:372:99:8637,910,0 chrIII 54426 . G A 5212.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=24.02;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5212,532,0 chrIII 54441 . C T 5191.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=24.14;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5191,526,0 chrIII 54482 . C A 5349.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.54;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5349,538,0 chrIII 54535 . T C 4447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=181;Dels=0.00;FS=8.673;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.224;QD=24.57;ReadPosRankSum=2.395;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4447,442,0 chrIII 54588 . T C 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.600;QD=23.23;ReadPosRankSum=1.688;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3670,376,0 chrIII 54609 . A C 3833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=4.127;HaplotypeScore=6.0108;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.416;QD=25.38;ReadPosRankSum=1.640;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3833,394,0 chrIII 54721 . C T 2606 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.90;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2639,262,0 chrIII 55716 . A G 5050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=225;Dels=0.00;FS=4.312;HaplotypeScore=9.5254;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=0.108;QD=22.44;ReadPosRankSum=1.701;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:5050,523,0 chrIII 56210 . T C 4417.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.0834;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.61;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4417,451,0 chrIII 57303 . A G 758 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:30:84:791,84,0 chrIII 58854 . T A 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=10.3613;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.311;QD=24.39;ReadPosRankSum=1.710;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3829,385,0 chrIII 59775 . G A 4183.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.86;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4183,427,0 chrIII 59925 . G A 4553.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.6402;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.35;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4553,460,0 chrIII 60024 . C T 4674.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.8589;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.13;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4674,466,0 chrIII 60058 . T C 4586.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.91;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4586,466,0 chrIII 60354 . C G 5493.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=21.6576;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.41;SB=-2.985e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:5493,568,0 chrIII 60463 . G A 7119.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=15.2792;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.04;SB=-4.057e+03 GT:AD:DP:GQ:PL 1/1:0,308:309:99:7119,748,0 chrIII 61224 . T A 1387 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1420,144,0 chrIII 61358 . G T 2410 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;QD=25.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2443,264,0 chrIII 61630 . A G 5587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=219;Dels=0.00;FS=12.152;HaplotypeScore=17.9066;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.356;QD=25.51;ReadPosRankSum=2.968;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:3,214:219:99:5587,562,0 chrIII 63611 . T C 5015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.277;DP=221;Dels=0.00;FS=12.902;HaplotypeScore=18.7211;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.657;QD=22.69;ReadPosRankSum=3.357;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:4,215:221:99:5015,511,0 chrIII 63878 . C G 5367.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.9755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.05;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5367,550,0 chrIII 63929 . C T 5194.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.1743;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.78;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5194,550,0 chrIII 64304 . C T 4233.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.65;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4233,459,0 chrIII 65867 . G A 541 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.24;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:60:574,60,0 chrIII 67277 . G A 4133.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=17.6118;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.09;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4133,412,0 chrIII 68070 . T G 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=17.4317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.382;QD=23.60;ReadPosRankSum=1.713;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:4248,430,0 chrIII 70158 . G T 5824.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.4974;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.47;SB=-2.974e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5824,598,0 chrIII 70425 . A T 6481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=263;Dels=0.00;FS=9.333;HaplotypeScore=22.8095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.546;QD=24.64;ReadPosRankSum=2.973;SB=-3.414e+03 GT:AD:DP:GQ:PL 1/1:3,260:263:99:6481,667,0 chrIII 71079 . T C 7015.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=17.0702;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.86;SB=-4.061e+03 GT:AD:DP:GQ:PL 1/1:0,292:294:99:7015,703,0 chrIII 72786 . T C 4534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.0791;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-0.078;QD=22.01;ReadPosRankSum=2.377;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:2,202:206:99:4534,466,0 chrIII 72790 . A G 4050.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.35;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4050,412,0 chrIII 73403 . C T 4669.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.8624;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.97;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4669,469,0 chrIII 73471 . G A 6859.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=13.6340;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.88;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:6859,703,0 chrIII 74074 . T C 4422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.254;DP=174;Dels=0.00;FS=3.655;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.080;QD=25.41;ReadPosRankSum=1.334;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4422,457,0 chrIII 74146 . C G 3802.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.4353;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.61;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,156:161:99:3802,385,0 chrIII 74327 . C A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.61;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3423,351,0 chrIII 74346 . A G 2831 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.12;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2864,297,0 chrIII 74505 . C T 2053 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.01;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2086,216,0 chrIII 74562 . G T 2570 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.48;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2603,264,0 chrIII 74673 . A G 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=8.189;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=1.063;QD=27.19;ReadPosRankSum=1.708;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3943,391,0 chrIII 74692 . C T 4040.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=26.58;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4040,409,0 chrIII 75025 . T C 5611.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=25.86;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5611,580,0 chrIII 75053 . T C 5678.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.86;SB=-3.031e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5678,580,0 chrIII 75088 . T A 5149.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.1328;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.17;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5149,517,0 chrIII 75130 . C T 4458.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.43;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4458,480,0 chrIII 75202 . G A 4824.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.4535;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.88;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4824,516,0 chrIII 75264 . A G 4132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=200;Dels=0.00;FS=2.774;HaplotypeScore=12.3038;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-1.314;QD=20.66;ReadPosRankSum=2.413;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:4132,427,0 chrIII 75288 . C T 4021.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.74;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4021,403,0 chrIII 75863 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.06;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2740,276,0 chrIII 76973 . G A 4413.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.43;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4413,433,0 chrIII 77505 . A G 5723.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=4.2939;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-3.124e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5723,580,0 chrIII 78354 . C T 4037.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.94;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4037,403,0 chrIII 78862 . T A 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.5671;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-1.494;QD=20.08;ReadPosRankSum=1.706;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2663,282,0 chrIII 79096 . G T 6330.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=14.2998;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.52;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:6330,652,0 chrIII 79170 . G A 6573.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=26.19;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:6573,697,0 chrIII 80341 . T C 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.4621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.086;QD=24.52;ReadPosRankSum=1.625;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3997,406,0 chrIII 81391 . G A 3205.99 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.47;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3239,328,0 chrIII 81425 . C A 3139 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.42;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3172,327,0 chrIII 81444 . C G 3576.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.6605;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=23.07;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3576,364,0 chrIII 81693 . A G 4262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=173;Dels=0.00;FS=6.839;HaplotypeScore=10.4832;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.092;QD=24.64;ReadPosRankSum=2.407;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4262,433,0 chrIII 81838 . C T 3918.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3918,394,0 chrIII 81970 . G A 2989 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.14;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3022,312,0 chrIII 82365 . G A 143.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:176,18,0 chrIII 82590 . C T 951 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=37.88;MQ0=0;QD=27.97;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:99:984,99,0 chrIII 82701 . G A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=11.39;SB=-2.476e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:54,6,0 chrIII 83036 . A T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=2.97;SB=-2.176e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:49,6,0 chrIII 83118 . T G 1891 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=25.90;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1924,198,0 chrIII 83421 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=24.49;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3265,328,0 chrIII 83576 . A G 2855 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=20.84;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2888,294,0 chrIII 83594 . A G 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=128;Dels=0.00;FS=6.111;HaplotypeScore=1.8835;MLEAC=2;MLEAF=1.00;MQ=43.01;MQ0=0;MQRankSum=-1.575;QD=17.55;ReadPosRankSum=2.945;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:2279,234,0 chrIII 83597 . G T 2205 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=42.59;MQ0=0;QD=17.36;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2238,222,0 chrIII 83607 . T A 1950 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;QD=16.25;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1983,195,0 chrIII 83631 . C T 2326 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=16.27;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2359,243,0 chrIII 84048 . C T 1557 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;QD=18.54;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1590,168,0 chrIII 84070 . G A 543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.506;DP=51;Dels=0.00;FS=29.172;HaplotypeScore=43.9765;MLEAC=2;MLEAF=1.00;MQ=30.55;MQ0=1;MQRankSum=0.941;QD=10.65;ReadPosRankSum=-4.094;SB=-3.400e+01 GT:AD:DP:GQ:PL 1/1:15,34:51:39:576,39,0 chrIII 84097 . C T 109.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.845;DP=90;Dels=0.00;FS=172.259;HaplotypeScore=6.3529;MLEAC=1;MLEAF=0.500;MQ=16.15;MQ0=8;MQRankSum=7.065;QD=1.22;ReadPosRankSum=-1.149;SB=-3.430e+00 GT:AD:DP:GQ:PL 0/1:62,28:90:7:139,0,7 chrIII 84099 . A G 93.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.805;DP=91;Dels=0.00;FS=197.882;HaplotypeScore=4.7755;MLEAC=1;MLEAF=0.500;MQ=16.06;MQ0=9;MQRankSum=7.249;QD=1.03;ReadPosRankSum=-0.424;SB=-3.430e+00 GT:AD:DP:GQ:PL 0/1:65,26:91:7:123,0,7 chrIII 84103 . A G 99.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;DP=91;Dels=0.00;FS=197.882;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=16.06;MQ0=9;MQRankSum=7.249;QD=1.09;ReadPosRankSum=-0.912;SB=-3.430e+00 GT:AD:DP:GQ:PL 0/1:65,26:91:7:129,0,7 chrIII 84109 . T C 96.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.712;DP=91;Dels=0.00;FS=197.882;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.06;MQ0=9;MQRankSum=7.249;QD=1.06;ReadPosRankSum=-1.858;SB=-3.430e+00 GT:AD:DP:GQ:PL 0/1:65,26:91:7:126,0,7 chrIII 84111 . C T 96.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.516;DP=91;Dels=0.00;FS=197.882;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.06;MQ0=9;MQRankSum=7.249;QD=1.06;ReadPosRankSum=-2.157;SB=-3.430e+00 GT:AD:DP:GQ:PL 0/1:65,26:91:7:126,0,7 chrIII 84112 . G C 101.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.639;DP=91;Dels=0.00;FS=197.882;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.06;MQ0=9;MQRankSum=7.249;QD=1.11;ReadPosRankSum=-2.486;SB=-3.430e+00 GT:AD:DP:GQ:PL 0/1:65,26:91:7:131,0,7 chrIII 84114 . T C 98.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.774;DP=92;Dels=0.00;FS=199.514;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.98;MQ0=9;MQRankSum=7.270;QD=1.07;ReadPosRankSum=-2.617;SB=-3.430e+00 GT:AD:DP:GQ:PL 0/1:66,26:92:7:128,0,7 chrIII 84116 . C G 95.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;DP=92;Dels=0.00;FS=199.514;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.98;MQ0=9;MQRankSum=7.270;QD=1.04;ReadPosRankSum=-2.744;SB=-3.430e+00 GT:AD:DP:GQ:PL 0/1:66,26:92:7:125,0,7 chrIII 84117 . T C 90.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;DP=92;Dels=0.00;FS=199.514;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.98;MQ0=9;MQRankSum=7.270;QD=0.98;ReadPosRankSum=-2.793;SB=-3.430e+00 GT:AD:DP:GQ:PL 0/1:66,26:92:7:120,0,7 chrIII 84133 . A G 260.64 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.798;DP=118;Dels=0.00;FS=299.209;HaplotypeScore=18.6162;MLEAC=2;MLEAF=1.00;MQ=19.61;MQ0=9;MQRankSum=8.988;QD=2.21;ReadPosRankSum=-6.840;SB=-6.469e-01 GT:AD:DP:GQ:PL 1/1:66,52:118:11:293,11,0 chrIII 84140 . T A 27.12 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.806;DP=123;Dels=0.05;FS=296.077;HaplotypeScore=92.0366;MLEAC=1;MLEAF=0.500;MQ=20.07;MQ0=9;MQRankSum=8.942;QD=0.22;ReadPosRankSum=-7.120;SB=-3.124e+00 GT:AD:DP:GQ:PL 0/1:66,51:117:13:57,0,13 chrIII 84147 . T C 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.376;DP=123;Dels=0.00;FS=244.340;HaplotypeScore=23.3634;MLEAC=2;MLEAF=1.00;MQ=20.07;MQ0=9;MQRankSum=8.081;QD=0.11;ReadPosRankSum=-4.149;SB=0.354 GT:AD:DP:GQ:PL 1/1:72,51:123:6:45,6,0 chrIII 84149 . A G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.345;DP=123;Dels=0.00;FS=244.340;HaplotypeScore=23.3634;MLEAC=2;MLEAF=1.00;MQ=20.07;MQ0=9;MQRankSum=8.645;QD=0.13;ReadPosRankSum=-3.704;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:72,51:123:6:47,6,0 chrIII 84152 . C T 156.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.309;DP=127;Dels=0.00;FS=343.209;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.50;MQ0=9;MQRankSum=9.353;QD=1.23;ReadPosRankSum=-4.325;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:65,62:127:24:189,24,0 chrIII 84161 . A G 365 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.581;DP=133;Dels=0.00;FS=340.927;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=21.25;MQ0=8;MQRankSum=9.291;QD=2.74;ReadPosRankSum=1.599;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:64,68:133:42:398,42,0 chrIII 84165 . A G 458 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.893;DP=125;Dels=0.00;FS=335.205;HaplotypeScore=1.8614;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=8;MQRankSum=9.235;QD=3.66;ReadPosRankSum=3.134;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:60,64:124:51:491,51,0 chrIII 84166 . T C 472 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.762;DP=123;Dels=0.00;FS=330.667;HaplotypeScore=1.8614;MLEAC=2;MLEAF=1.00;MQ=21.31;MQ0=8;MQRankSum=9.165;QD=3.84;ReadPosRankSum=3.489;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:58,65:123:51:505,51,0 chrIII 84181 . G A 470 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.924;DP=112;Dels=0.00;FS=256.529;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=24.49;MQ0=5;MQRankSum=7.835;QD=4.20;ReadPosRankSum=6.177;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:33,79:112:51:503,51,0 chrIII 84190 . G A 599 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.490;DP=83;Dels=0.00;FS=62.211;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=2;MQRankSum=3.346;QD=7.22;ReadPosRankSum=3.259;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:6,77:83:63:632,63,0 chrIII 84194 . C T 603 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.37;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:66:636,66,0 chrIII 84195 . A G 596 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.28;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:66:629,66,0 chrIII 84204 . G A 590 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.08;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:66:623,66,0 chrIII 84205 . A G 596 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.17;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:66:629,66,0 chrIII 84208 . A G 645 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.92;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:69:678,69,0 chrIII 84209 . T A 635 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.77;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:69:668,69,0 chrIII 84216 . G A 608 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.50;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:66:641,66,0 chrIII 84636 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrIII 84735 . C T 57.97 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=14.49;SB=-5.521e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:90,9,0 chrIII 91321 . C G 2089 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=12.2409;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.17;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2122,216,0 chrIII 91659 . A C 4684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=213;Dels=0.00;FS=3.441;HaplotypeScore=12.8059;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.147;QD=21.99;ReadPosRankSum=1.716;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:4684,487,0 chrIII 91728 . C T 4489.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=17.0741;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.03;SB=-3.306e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:4489,471,0 chrIII 91977 . G A 5591.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=17.6530;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=24.63;SB=-2.891e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5591,565,0 chrIII 92106 . T C 6302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.360;DP=262;Dels=0.00;FS=5.112;HaplotypeScore=11.5809;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.298;QD=24.05;ReadPosRankSum=3.427;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:4,256:262:99:6302,646,0 chrIII 92187 . C T 5638.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=23.69;SB=-3.063e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5638,568,0 chrIII 92193 . T C 5378.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=5.1764;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.89;SB=-3.185e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5378,553,0 chrIII 92292 . G A 5192.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=16.7401;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.39;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5192,526,0 chrIII 92556 . G C 2601 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=26.27;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2634,267,0 chrIII 92671 . C T 1851 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=27.63;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1884,186,0 chrIII 92716 . C T 1688 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.0510;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.37;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1721,171,0 chrIII 93230 . T C 5169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.203;QD=24.04;ReadPosRankSum=1.716;SB=-2.990e+03 GT:AD:DP:GQ:PL 1/1:1,212:215:99:5169,535,0 chrIII 93275 . C T 4099.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4099,433,0 chrIII 93455 . A G 4276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.4861;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.335;QD=23.11;ReadPosRankSum=1.713;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:1,181:185:99:4276,456,0 chrIII 93512 . A G 3679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.222;DP=155;Dels=0.00;FS=13.518;HaplotypeScore=8.6981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.175;QD=23.74;ReadPosRankSum=3.357;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:4,151:155:99:3679,379,0 chrIII 93620 . T C 4381.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.3888;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.55;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4381,457,0 chrIII 93824 . A G 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=167;Dels=0.00;FS=6.312;HaplotypeScore=11.2593;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=2.052;QD=24.85;ReadPosRankSum=2.405;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4150,421,0 chrIII 93866 . A C 5185.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.29;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5185,535,0 chrIII 94248 . C T 5144.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.60;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:5144,514,0 chrIII 94376 . T C 1500 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.81;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1533,159,0 chrIII 94470 . T G 1309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=66;Dels=0.00;FS=8.587;HaplotypeScore=9.7885;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.199;QD=19.83;ReadPosRankSum=1.679;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1342,138,0 chrIII 94554 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=23.89;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2159,222,0 chrIII 94573 . G A 2443 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=20.88;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2476,243,0 chrIII 94591 . C G 2912 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=21.26;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2945,306,0 chrIII 95029 . A G 7464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.684;DP=331;Dels=0.00;FS=16.560;HaplotypeScore=19.0489;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.997;QD=22.55;ReadPosRankSum=3.675;SB=-3.995e+03 GT:AD:DP:GQ:PL 1/1:5,326:331:99:7464,778,0 chrIII 95071 . A G 6966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=312;Dels=0.00;FS=10.366;HaplotypeScore=21.1362;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.308;QD=22.33;ReadPosRankSum=2.958;SB=-3.598e+03 GT:AD:DP:GQ:PL 1/1:3,307:312:99:6966,715,0 chrIII 95149 . A G 6482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=13.1318;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.391;QD=24.46;ReadPosRankSum=1.719;SB=-3.846e+03 GT:AD:DP:GQ:PL 1/1:1,263:265:99:6482,649,0 chrIII 95527 . T C 4842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=220;Dels=0.00;FS=4.246;HaplotypeScore=16.8589;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.350;QD=22.01;ReadPosRankSum=1.716;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:1,217:220:99:4842,490,0 chrIII 95697 . C T 3725.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.58;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3725,376,0 chrIII 95776 . T C 4244.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=25.88;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4244,424,0 chrIII 95815 . C T 4092.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.2067;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.12;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4092,438,0 chrIII 95935 . A C 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=3.318;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-0.664;QD=20.65;ReadPosRankSum=1.685;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3048,321,0 chrIII 95946 . C G 2361 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.49;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2394,240,0 chrIII 95967 . G T 1974 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=15.92;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2007,210,0 chrIII 96019 . A G 2586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=124;Dels=0.00;FS=3.035;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.545;QD=20.85;ReadPosRankSum=2.410;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2619,267,0 chrIII 96055 . A G 3738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=143;Dels=0.00;FS=3.030;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.367;QD=26.14;ReadPosRankSum=2.398;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3738,379,0 chrIII 96799 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=19.95;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3432,363,0 chrIII 96805 . A T 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=180;Dels=0.00;FS=2.802;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.184;QD=20.54;ReadPosRankSum=2.368;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3698,379,0 chrIII 96988 . A G 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=125;Dels=0.00;FS=2.998;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-1.367;QD=25.66;ReadPosRankSum=2.371;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:3240,325,0 chrIII 97369 . A G 2244 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2277,234,0 chrIII 97696 . A G 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=3.321;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.165;QD=25.82;ReadPosRankSum=1.702;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:3028,321,0 chrIII 98308 . T C 4552.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.31;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4552,466,0 chrIII 98535 . C G 4364.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.08;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4364,442,0 chrIII 98578 . C T 4422.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4974;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4422,451,0 chrIII 98617 . T C 3765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=3.396;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.302;QD=24.61;ReadPosRankSum=1.709;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3765,399,0 chrIII 99163 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.029;QD=25.75;ReadPosRankSum=1.706;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3450,358,0 chrIII 99195 . C A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.52;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3693,379,0 chrIII 99209 . A G 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=3.083;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.067;QD=22.25;ReadPosRankSum=1.713;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4049,421,0 chrIII 99392 . C T 4340.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=27.13;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:4340,430,0 chrIII 99481 . T C 3967.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.19;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3967,406,0 chrIII 99547 . C T 4001.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;QD=25.32;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4001,406,0 chrIII 99700 . T C 2891 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2924,303,0 chrIII 100212 . A G 3396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=137;Dels=0.00;FS=2.665;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.588;QD=24.79;ReadPosRankSum=2.414;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3396,343,0 chrIII 100244 . T C 3205.99 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3239,328,0 chrIII 100295 . A G 2037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.538;DP=94;Dels=0.00;FS=5.475;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.387;QD=21.67;ReadPosRankSum=2.904;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:3,91:94:99:2070,222,0 chrIII 100583 . G A 1811 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=16.32;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1844,222,0 chrIII 100585 . A G 1740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-0.140;QD=15.68;ReadPosRankSum=1.264;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1773,213,0 chrIII 100644 . A G 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=133;Dels=0.00;FS=2.993;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=-0.917;QD=20.29;ReadPosRankSum=2.393;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:2,129:133:99:2731,276,0 chrIII 100653 . T C 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=3.538;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.542;QD=20.91;ReadPosRankSum=1.706;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2772,285,0 chrIII 100869 . A G 3477.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=27.38;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3477,355,0 chrIII 100927 . C T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=26.57;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3507,349,0 chrIII 101152 . C T 2103 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.24;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2136,210,0 chrIII 101155 . C T 1942 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.82;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1975,201,0 chrIII 101527 . C A 3842.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.14;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3842,402,0 chrIII 101597 . A G 3850.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.2994;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=24.37;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3850,414,0 chrIII 101813 . T G 1869 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2679;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.32;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1902,195,0 chrIII 101894 . T C 109.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;DP=60;Dels=0.00;FS=24.477;HaplotypeScore=6.7523;MLEAC=1;MLEAF=0.500;MQ=56.85;MQ0=0;MQRankSum=0.116;QD=1.82;ReadPosRankSum=2.034;SB=-2.604e+00 GT:AD:DP:GQ:PL 0/1:10,50:60:30:139,0,30 chrIII 102669 . C T 4021.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.6227;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.24;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4021,421,0 chrIII 103593 . A G 4418.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.39;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4418,463,0 chrIII 105155 . C T 7969.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=21.3881;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.15;SB=-3.174e+03 GT:AD:DP:GQ:PL 1/1:0,330:330:99:7969,799,0 chrIII 107000 . C A 4460.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.3497;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.87;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4460,448,0 chrIII 109046 . A G 2868 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.12;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2901,286,0 chrIII 111960 . C T 3757.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3757,370,0 chrIII 114986 . G A 2655 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2688,288,0 chrIII 119474 . A C 1096 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.83;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,45:48:99:1129,117,0 chrIII 119587 . A G 1838 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.26;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1871,195,0 chrIII 122563 . C G 4780.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.6389;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.16;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,185:190:99:4780,481,0 chrIII 126323 . C A 2449 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2482,264,0 chrIII 128224 . T C 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.599;QD=26.15;ReadPosRankSum=1.688;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:2073,207,0 chrIII 130242 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.38;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3166,319,0 chrIII 130372 . G A 1222 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=16.29;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1255,129,0 chrIII 130462 . T C 1031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.499;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.5190;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.497;QD=16.90;ReadPosRankSum=-0.910;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,58:61:99:1064,108,0 chrIII 130940 . A G 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0885;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.433;QD=22.87;ReadPosRankSum=1.707;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3235,333,0 chrIII 131280 . T C 5444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.7247;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.583;QD=25.80;ReadPosRankSum=1.699;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:5444,556,0 chrIII 131983 . T C 2193 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.92;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2226,222,0 chrIII 133467 . C T 3813.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.83;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,155:160:99:3813,405,0 chrIII 133715 . G A 3024 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.3348;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.39;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3057,315,0 chrIII 134374 . G A 3591.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3591,358,0 chrIII 136789 . T C 3082 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.33;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3115,321,0 chrIII 139959 . G A 2835 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7287;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.05;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2868,291,0 chrIII 140656 . A G 4705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=189;Dels=0.00;FS=9.981;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.411;QD=24.89;ReadPosRankSum=2.897;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:3,183:189:99:4705,484,0 chrIII 141500 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.13;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2470,249,0 chrIII 142872 . C T 866 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.65;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:899,93,0 chrIII 143131 . T C 2835 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=26.01;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2868,300,0 chrIII 143226 . G A 2244 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=19.34;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2277,237,0 chrIII 143428 . A T 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=96;Dels=0.00;FS=6.739;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.309;QD=25.08;ReadPosRankSum=2.320;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2441,246,0 chrIII 145735 . T C 5831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=219;Dels=0.00;FS=6.034;HaplotypeScore=15.5731;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.729;QD=26.63;ReadPosRankSum=2.968;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:3,216:219:99:5831,595,0 chrIII 147608 . G A 4055.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.4215;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.34;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4055,400,0 chrIII 148618 . T G 3688.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.9817;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.69;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3688,384,0 chrIII 148649 . T C 3648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=169;Dels=0.00;FS=5.237;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.359;QD=21.59;ReadPosRankSum=1.711;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3648,370,0 chrIII 148694 . A T 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.718;QD=20.64;ReadPosRankSum=2.405;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3426,360,0 chrIII 148835 . C T 2335 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.82;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2368,249,0 chrIII 148991 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.89;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3391,354,0 chrIII 152269 . T C 4698.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.3162;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=27.00;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4698,475,0 chrIII 152546 . A G 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=133;Dels=0.00;FS=2.986;HaplotypeScore=19.7895;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.929;QD=24.11;ReadPosRankSum=2.412;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,129:133:99:3239,328,0 chrIII 157998 . C T 3201 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3234,348,0 chrIII 158141 . C T 3886.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.55;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:3886,391,0 chrIII 158345 . T C 2516 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.16;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2549,252,0 chrIII 158378 . T C 2294 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.65;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2327,234,0 chrIII 158956 . T C 3865.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0615;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.26;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3865,405,0 chrIII 159689 . C T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.88;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3415,337,0 chrIII 159774 . C A 4806.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.56;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4806,475,0 chrIII 159894 . A T 3677.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.35;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3677,370,0 chrIII 161749 . G T 3086 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.8568;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3119,316,0 chrIII 162396 . G C 430 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:51:463,51,0 chrIII 162640 . T G 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.9046;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.591;QD=25.37;ReadPosRankSum=1.693;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2266,234,0 chrIII 162941 . C A 2488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;DP=120;Dels=0.00;FS=3.766;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.946;QD=20.73;ReadPosRankSum=-0.451;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2521,251,0 chrIII 163757 . T G 4761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=206;Dels=0.00;FS=3.226;HaplotypeScore=11.8681;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.538;QD=23.11;ReadPosRankSum=1.682;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4761,478,0 chrIII 163810 . A G 4612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.206;QD=22.61;ReadPosRankSum=1.698;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4612,478,0 chrIII 164249 . G T 6133.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=9.6978;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.14;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:6133,616,0 chrIII 164277 . A G 5661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=10.4900;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.850;QD=21.36;ReadPosRankSum=1.693;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:1,262:265:99:5661,589,0 chrIII 165025 . T C 3348.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.3718;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.93;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3348,340,0 chrIII 165034 . C T 3334.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=18.73;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3334,348,0 chrIII 165283 . G A 3591.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.32;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3591,352,0 chrIII 167724 . T C 3847.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3847,403,0 chrIII 168408 . G A 1250 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=1;QD=22.73;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1283,126,0 chrIII 170834 . T C 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=107;Dels=0.00;FS=2.852;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.955;QD=25.50;ReadPosRankSum=2.358;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2761,282,0 chrIII 171878 . T C 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.361;QD=22.50;ReadPosRankSum=1.707;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3160,327,0 chrIII 173354 . G A 4426.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.66;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4426,439,0 chrIII 174804 . A G 4199.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.7063;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.72;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4199,430,0 chrIII 175328 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.410;QD=24.56;ReadPosRankSum=1.687;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3758,379,0 chrIII 175359 . T C 3541.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.42;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3541,364,0 chrIII 175569 . T C 4026.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:4026,415,0 chrIII 177325 . A G 2010 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.22;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2043,204,0 chrIII 177399 . G A 2493 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.7696;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.30;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2526,264,0 chrIII 177899 . A T 4529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.0946;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;MQRankSum=1.213;QD=21.26;ReadPosRankSum=2.256;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:3,209:213:99:4529,478,0 chrIII 178367 . G A 3909.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3909,394,0 chrIII 179122 . C T 3172 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.4828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.00;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3205,316,0 chrIII 180127 . G A 2277 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.75;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2310,228,0 chrIII 181211 . T C 1881 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1914,198,0 chrIII 181268 . A G 2129 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.61;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2162,219,0 chrIII 181487 . T C 2746 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.30;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2779,294,0 chrIII 181524 . C A 2795 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.64;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2828,280,0 chrIII 182576 . C T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.3122;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.99;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3311,331,0 chrIII 183385 . C T 3437.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.64;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3437,360,0 chrIII 183635 . C T 2497 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.56;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2530,261,0 chrIII 183893 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2700,282,0 chrIII 184234 . T C 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=159;Dels=0.00;FS=2.921;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.723;QD=25.31;ReadPosRankSum=2.418;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:4025,412,0 chrIII 184757 . A T 3141 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.33;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3174,330,0 chrIII 184874 . C A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.92;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3577,361,0 chrIII 185117 . T C 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=148;Dels=0.00;FS=6.022;HaplotypeScore=14.6283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.083;QD=21.09;ReadPosRankSum=2.952;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:3,143:148:99:3154,327,0 chrIII 185715 . G A 3150 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=10.0004;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.50;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3183,333,0 chrIII 187346 . G T 4494.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.4865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4494,463,0 chrIII 187655 . G A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.99;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3698,382,0 chrIII 187932 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1845,201,0 chrIII 188418 . C T 2782 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.73;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2815,303,0 chrIII 188477 . T C 2752 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.48;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2785,288,0 chrIII 188954 . C T 4199.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.5010;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.99;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4199,433,0 chrIII 190765 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.40;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3488,372,0 chrIII 191932 . C T 3652.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.46;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3652,364,0 chrIII 192715 . C A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4347;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.68;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3800,379,0 chrIII 193066 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.10;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3758,376,0 chrIII 193107 . C A 2998 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3031,309,0 chrIII 193566 . T C 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=4.041;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.415;QD=23.53;ReadPosRankSum=1.683;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3341,340,0 chrIII 193600 . C T 4014.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.7829;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.78;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4014,403,0 chrIII 193828 . G A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3755,373,0 chrIII 196331 . C T 2586 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2619,267,0 chrIII 196476 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.17;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3166,333,0 chrIII 196679 . T G 4080.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.43;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4080,421,0 chrIII 196833 . T C 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.483;QD=25.15;ReadPosRankSum=1.661;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3722,385,0 chrIII 197306 . T C 3472.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.7721;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.97;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3472,355,0 chrIII 198109 . A C 5239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=243;Dels=0.00;FS=3.137;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-1.319;QD=21.56;ReadPosRankSum=1.718;SB=-3.248e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:5239,579,0 chrIII 198110 . C A 5268.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.50;SB=-3.287e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5268,582,0 chrIII 198348 . A G 5370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=17.8927;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.214;QD=24.52;ReadPosRankSum=1.685;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:5370,547,0 chrIII 199130 . G C 2009 filter AC=2;AF=1.00;AN=2;DP=356;Dels=0.00;FS=0.000;HaplotypeScore=20.5564;MLEAC=2;MLEAF=1.00;MQ=16.99;MQ0=49;QD=5.64;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,353:356:99:2042,234,0 chrIII 201189 . A C 4093.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=25.42;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:4093,421,0 chrIII 201900 . A G 2288 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.83;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2321,243,0 chrIII 201978 . A G 3185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.446;QD=23.95;ReadPosRankSum=1.706;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3218,330,0 chrIII 203463 . C G 2934 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.96;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2967,303,0 chrIII 204750 . G A 4182.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.03;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4182,433,0 chrIII 207086 . G C 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.9072;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.431;QD=23.95;ReadPosRankSum=-0.718;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4359,445,0 chrIII 207935 . C G 4064.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.7651;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.24;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4064,412,0 chrIII 207999 . C G 3592.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.7706;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=22.73;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3592,384,0 chrIII 209941 . G C 4427.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.6500;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.55;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4427,463,0 chrIII 210757 . G A 2273 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.86;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2306,231,0 chrIII 210881 . T G 5490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.3120;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.909;QD=24.62;ReadPosRankSum=1.717;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:5490,553,0 chrIII 211998 . G C 6555.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=17.0627;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.37;SB=-3.226e+03 GT:AD:DP:GQ:PL 1/1:0,264:269:99:6555,658,0 chrIII 212063 . G T 5077.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=17.4379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5077,523,0 chrIII 212160 . G A 5289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=18.7139;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.499;QD=22.22;ReadPosRankSum=-0.205;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:1,236:238:99:5289,544,0 chrIII 213859 . G A 1680 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=17.7718;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.67;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1713,174,0 chrIII 214135 . G A 5542.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=19.9658;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.02;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,207:213:99:5542,571,0 chrIII 214762 . C T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.69;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3311,348,0 chrIII 215005 . G A 3633.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.5877;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.88;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3633,372,0 chrIII 215487 . G T 9368.01 filter AC=2;AF=1.00;AN=2;DP=377;Dels=0.00;FS=0.000;HaplotypeScore=29.4214;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.85;SB=-4.113e+03 GT:AD:DP:GQ:PL 1/1:0,376:377:99:9368,950,0 chrIII 215848 . C T 7293.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=12.4541;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.47;SB=-3.383e+03 GT:AD:DP:GQ:PL 1/1:0,296:298:99:7293,736,0 chrIII 216257 . C T 9329.01 filter AC=2;AF=1.00;AN=2;DP=377;Dels=0.00;FS=0.000;HaplotypeScore=39.2258;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.75;SB=-4.304e+03 GT:AD:DP:GQ:PL 1/1:0,377:377:99:9329,946,0 chrIII 219571 . A T 3896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=4.114;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;MQRankSum=0.247;QD=26.50;ReadPosRankSum=1.685;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3896,403,0 chrIII 220080 . A G 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.046;QD=23.72;ReadPosRankSum=1.701;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2666,273,0 chrIII 222524 . G T 6391.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=16.0289;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:6391,655,0 chrIII 224310 . A G 510 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=4.9429;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,24:26:54:543,54,0 chrIII 224795 . A G 160.06 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=61.26;MQ0=0;QD=9.42;SB=-5.906e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:21:193,21,0 chrIII 224861 . T G 1160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.672;QD=23.67;ReadPosRankSum=1.662;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1193,129,0 chrIII 225251 . A T 2924 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.17;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2957,309,0 chrIII 225343 . T A 2504 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.56;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2537,255,0 chrIII 225558 . G C 5660.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=20.9253;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.84;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:5660,580,0 chrIII 225710 . T C 5873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=240;Dels=0.00;FS=2.931;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.918;QD=24.47;ReadPosRankSum=2.378;SB=-3.046e+03 GT:AD:DP:GQ:PL 1/1:2,238:240:99:5873,598,0 chrIII 226701 . C G 4600.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4600,472,0 chrIII 227024 . G A 4283.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=25.0595;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.69;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4283,468,0 chrIII 227231 . G A 4683.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.02;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4683,472,0 chrIII 227570 . G A 1401 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.3425;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;QD=23.35;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1434,144,0 chrIII 227763 . C A 1876 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=11.9967;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.05;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1909,192,0 chrIII 228130 . C T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.7732;MLEAC=2;MLEAF=1.00;MQ=61.09;MQ0=0;QD=26.75;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3665,381,0 chrIII 230267 . A G 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.957;QD=24.29;ReadPosRankSum=1.684;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3473,358,0 chrIII 231858 . G T 3876.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.80;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3876,397,0 chrIII 233570 . G A 4858.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.9623;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=24.41;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4858,499,0 chrIII 233786 . T C 983.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;DP=145;Dels=0.00;FS=0.639;HaplotypeScore=19.8836;MLEAC=1;MLEAF=0.500;MQ=53.91;MQ0=0;MQRankSum=2.085;QD=6.78;ReadPosRankSum=2.205;SB=-4.800e+02 GT:AD:DP:GQ:PL 0/1:82,61:145:99:1013,0,1594 chrIII 233797 . A C 665.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;DP=141;Dels=0.00;FS=0.675;HaplotypeScore=11.0850;MLEAC=1;MLEAF=0.500;MQ=53.36;MQ0=0;MQRankSum=-2.526;QD=4.72;ReadPosRankSum=-4.699;SB=-4.000e+02 GT:AD:DP:GQ:PL 0/1:95,46:141:99:695,0,1627 chrIII 233803 . A G 217.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.072;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=-3.690;QD=1.49;ReadPosRankSum=-6.321;SB=-2.010e+02 GT:AD:DP:GQ:PL 0/1:112,33:146:99:247,0,2147 chrIII 233813 . A G 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=1.559;QD=21.01;ReadPosRankSum=1.707;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,139:143:99:3038,318,0 chrIII 234075 . C T 4068.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.80;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4068,424,0 chrIII 234551 . A G 3678.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.84;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3678,390,0 chrIII 235472 . A G 3793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=149;Dels=0.00;FS=3.040;HaplotypeScore=10.3462;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.623;QD=25.46;ReadPosRankSum=2.284;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3793,394,0 chrIII 235561 . T A 2617 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.8279;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.76;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2650,276,0 chrIII 235639 . T A 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.632;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.260;QD=21.73;ReadPosRankSum=1.703;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2641,270,0 chrIII 235645 . T C 2604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=3.874;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.170;QD=21.34;ReadPosRankSum=1.704;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2637,273,0 chrIII 235669 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.57;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2967,292,0 chrIII 236387 . G A 3981.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3981,403,0 chrIII 236451 . G A 3578.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3578,375,0 chrIII 236727 . G A 2069 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.25;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2102,216,0 chrIII 236789 . T C 98.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;DP=93;Dels=0.00;FS=13.775;HaplotypeScore=65.1708;MLEAC=1;MLEAF=0.500;MQ=57.46;MQ0=0;MQRankSum=1.897;QD=1.05;ReadPosRankSum=-2.927;SB=-1.200e+02 GT:AD:DP:GQ:PL 0/1:65,28:93:99:128,0,652 chrIII 236942 . T C 2892 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.9510;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.93;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2925,297,0 chrIII 236969 . A G 2709 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=26.56;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2742,279,0 chrIII 237018 . A G 3105 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.88;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3138,327,0 chrIII 237321 . G A 5175.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.76;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5175,529,0 chrIII 237552 . C G 6459.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=21.2531;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.19;SB=-3.196e+03 GT:AD:DP:GQ:PL 1/1:0,263:267:99:6459,667,0 chrIII 237610 . T A 7148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=288;Dels=0.00;FS=5.561;HaplotypeScore=25.9621;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.655;QD=24.82;ReadPosRankSum=2.906;SB=-3.314e+03 GT:AD:DP:GQ:PL 1/1:3,285:288:99:7148,718,0 chrIII 237645 . C T 6055.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=12.7421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:6055,634,0 chrIII 237732 . T C 7617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.333;DP=314;Dels=0.00;FS=8.431;HaplotypeScore=19.3320;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.349;QD=24.26;ReadPosRankSum=3.417;SB=-3.656e+03 GT:AD:DP:GQ:PL 1/1:4,309:314:99:7617,784,0 chrIII 237960 . G A 6837.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.95;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:0,273:274:99:6837,682,0 chrIII 238082 . T C 7158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=296;Dels=0.00;FS=6.908;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.981;QD=24.18;ReadPosRankSum=2.391;SB=-3.793e+03 GT:AD:DP:GQ:PL 1/1:2,292:296:99:7158,733,0 chrIII 238260 . G A 7185.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=19.6321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.18;SB=-3.486e+03 GT:AD:DP:GQ:PL 1/1:0,307:310:99:7185,739,0 chrIII 238350 . C T 7651.01 PASS AC=2;AF=1.00;AN=2;DP=347;Dels=0.00;FS=0.000;HaplotypeScore=9.2916;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=22.05;SB=-3.378e+03 GT:AD:DP:GQ:PL 1/1:0,347:347:99:7651,781,0 chrIII 238359 . C T 7379.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=6.9427;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.90;SB=-3.319e+03 GT:AD:DP:GQ:PL 1/1:0,336:337:99:7379,763,0 chrIII 238562 . A G 7774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=337;Dels=0.00;FS=2.827;HaplotypeScore=15.0738;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-0.683;QD=23.07;ReadPosRankSum=2.406;SB=-3.765e+03 GT:AD:DP:GQ:PL 1/1:2,335:337:99:7774,808,0 chrIII 238879 . T C 6548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=266;Dels=0.00;FS=10.008;HaplotypeScore=18.7642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.213;QD=24.62;ReadPosRankSum=2.973;SB=-3.445e+03 GT:AD:DP:GQ:PL 1/1:3,261:266:99:6548,661,0 chrIII 238947 . T C 5217.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.83;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5217,541,0 chrIII 239515 . A G 4715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=211;Dels=0.00;FS=2.970;HaplotypeScore=14.8877;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.251;QD=22.35;ReadPosRankSum=2.391;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:4715,484,0 chrIII 239957 . T C 1557 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.96;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1590,162,0 chrIII 240075 . C A 587 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=10.3071;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.57;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:63:620,63,0 chrIII 240280 . C T 1700 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.67;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1733,177,0 chrIII 240337 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.89;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3440,352,0 chrIII 240607 . G A 2785 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=21.10;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2818,283,0 chrIII 240608 . T A 2790 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=21.30;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2823,283,0 chrIII 240922 . T C 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.282;DP=177;Dels=0.00;FS=5.229;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.834;QD=22.43;ReadPosRankSum=3.400;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:4,173:177:99:3970,412,0 chrIII 241126 . C T 5705.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.3965;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.70;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,218:222:99:5705,580,0 chrIII 241156 . G A 5019.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.24;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5019,511,0 chrIII 241753 . T C 5223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=227;Dels=0.00;FS=2.762;HaplotypeScore=18.9171;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.946;QD=23.01;ReadPosRankSum=2.395;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:2,225:227:99:5223,556,0 chrIII 241995 . G A 4752.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.6662;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=24.00;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4752,475,0 chrIII 242071 . C T 4077.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.3879;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.43;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4077,421,0 chrIII 242137 . G A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=23.62;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3638,367,0 chrIII 242143 . A G 3224.03 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=22.70;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3257,331,0 chrIII 242230 . A T 2839 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=23.08;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2872,294,0 chrIII 242239 . A G 2940 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=22.44;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2973,306,0 chrIII 242251 . G A 2678 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=21.09;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2711,282,0 chrIII 242407 . A G 1375 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=22.18;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1408,144,0 chrIII 242483 . G A 1411 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=17.00;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1444,150,0 chrIII 242723 . C T 5254.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.5239;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.14;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5254,538,0 chrIII 242777 . T A 5285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=225;Dels=0.00;FS=2.775;HaplotypeScore=8.9661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.376;QD=23.49;ReadPosRankSum=2.384;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5285,562,0 chrIII 242882 . A G 5649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.437;DP=268;Dels=0.00;FS=17.904;HaplotypeScore=26.8799;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.800;QD=21.08;ReadPosRankSum=4.492;SB=-3.376e+03 GT:AD:DP:GQ:PL 1/1:7,261:268:99:5649,586,0 chrIII 243218 . C G 4475.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=5.5481;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.29;SB=-3.259e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:4475,507,0 chrIII 243219 . G A 4519.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=4.7594;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.48;SB=-3.366e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4519,507,0 chrIII 243734 . A G 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=40.4477;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=1.036;QD=18.13;ReadPosRankSum=1.715;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:3807,411,0 chrIII 243779 . C T 3813.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.7423;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=21.18;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3813,382,0 chrIII 243794 . A G 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.083;DP=184;Dels=0.00;FS=9.175;HaplotypeScore=12.7418;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.467;QD=20.74;ReadPosRankSum=2.918;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:3816,391,0 chrIII 243914 . G A 4272.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.25;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4272,424,0 chrIII 243928 . T A 4200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=209;Dels=0.00;FS=5.953;HaplotypeScore=7.4899;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.851;QD=20.10;ReadPosRankSum=2.563;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:3,206:209:99:4200,436,0 chrIII 243959 . A G 4462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=214;Dels=0.00;FS=2.655;HaplotypeScore=15.9027;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.614;QD=20.85;ReadPosRankSum=2.381;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:4462,463,0 chrIII 244604 . T C 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.733;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.417;QD=22.97;ReadPosRankSum=1.656;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:3249,328,0 chrIII 244643 . G A 2533 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.24;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2566,267,0 chrIII 244888 . T C 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=3.086;HaplotypeScore=5.6732;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=1.374;QD=22.80;ReadPosRankSum=1.643;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2678,270,0 chrIII 245054 . G A 2516 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.14;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2549,261,0 chrIII 245066 . G A 2610 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=22.12;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2643,267,0 chrIII 245276 . T C 4210.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2702;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=26.31;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4210,421,0 chrIII 245396 . A G 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.913;QD=26.45;ReadPosRankSum=1.709;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3914,391,0 chrIII 245631 . C A 4288.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.4707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4288,424,0 chrIII 246171 . G A 4344.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.9629;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.99;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4344,471,0 chrIII 246183 . C A 4680.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.18;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:4680,469,0 chrIII 246581 . C T 2436 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.6316;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=19.80;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2469,258,0 chrIII 246789 . C A 2169 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.26;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2202,243,0 chrIII 246813 . T G 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=5.371;HaplotypeScore=9.9116;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=1.173;QD=19.00;ReadPosRankSum=0.559;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2389,240,0 chrIII 246818 . T A 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.214;DP=136;Dels=0.00;FS=2.395;HaplotypeScore=11.5986;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=-0.097;QD=17.31;ReadPosRankSum=3.394;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:4,132:136:99:2387,240,0 chrIII 246853 . G A 3456.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=19.86;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3456,358,0 chrIII 247156 . C A 10289.01 filter AC=2;AF=1.00;AN=2;DP=402;Dels=0.00;FS=0.000;HaplotypeScore=17.4320;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.59;SB=-4.405e+03 GT:AD:DP:GQ:PL 1/1:0,401:402:99:10289,1010,0 chrIII 247472 . C T 5935.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=21.5990;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-3.055e+03 GT:AD:DP:GQ:PL 1/1:0,241:246:99:5935,607,0 chrIII 248057 . A G 2996 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.6679;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=28.00;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3029,301,0 chrIII 248549 . C T 5812.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=17.5967;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.70;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:0,252:256:99:5812,607,0 chrIII 248853 . C T 138.13 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=150.8726;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=0.78;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:18:171,18,0 chrIII 249067 . G A 4298.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=27.03;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4298,427,0 chrIII 249244 . T C 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=197;Dels=0.00;FS=8.572;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;MQRankSum=1.530;QD=21.47;ReadPosRankSum=2.399;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:2,193:197:99:4229,424,0 chrIII 249285 . A C 2030 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.143;DP=157;Dels=0.00;FS=23.591;HaplotypeScore=4.8112;MLEAC=2;MLEAF=1.00;MQ=35.24;MQ0=0;MQRankSum=-3.603;QD=12.93;ReadPosRankSum=4.116;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:6,151:157:99:2063,222,0 chrIII 249286 . C T 1862 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=154;Dels=0.00;FS=11.982;HaplotypeScore=1.9117;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;MQRankSum=-2.510;QD=12.09;ReadPosRankSum=2.955;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:1895,216,0 chrIII 249290 . C A 2199 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;QD=14.66;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2232,228,0 chrIII 249389 . A G 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=4.462;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=0.531;QD=16.56;ReadPosRankSum=1.712;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:2965,306,0 chrIII 249499 . C G 4717.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=24.31;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4717,487,0 chrIII 249541 . C G 4916.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=20.5828;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=22.14;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4916,517,0 chrIII 249898 . A G 4310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;DP=186;Dels=0.00;FS=2.579;HaplotypeScore=12.5622;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.038;QD=23.17;ReadPosRankSum=2.952;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:4310,439,0 chrIII 249994 . C A 2738 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.74;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2771,277,0 chrIII 250185 . T A 268 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=5.0805;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=14.11;SB=-2.009e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:30:301,30,0 chrIII 250253 . T A 464 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:51:497,51,0 chrIII 250855 . A G 3959.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.74;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3959,394,0 chrIII 251323 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.79;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3246,331,0 chrIII 251657 . T C 2978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.5836;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.441;QD=20.83;ReadPosRankSum=1.708;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3011,312,0 chrIII 251945 . G A 6472.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.33;SB=-3.335e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6472,691,0 chrIII 252079 . C T 6127.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=23.4986;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.73;SB=-2.858e+03 GT:AD:DP:GQ:PL 1/1:0,279:282:99:6127,649,0 chrIII 252128 . T C 5635.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=27.7877;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.72;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,268:272:99:5635,583,0 chrIII 252239 . A C 6130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=296;Dels=0.00;FS=4.501;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-1.159;QD=20.71;ReadPosRankSum=1.685;SB=-2.910e+03 GT:AD:DP:GQ:PL 1/1:1,295:296:99:6130,646,0 chrIII 252242 . A C 6092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.433;DP=297;Dels=0.00;FS=8.887;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.388;QD=20.51;ReadPosRankSum=2.391;SB=-3.002e+03 GT:AD:DP:GQ:PL 1/1:2,292:297:99:6092,634,0 chrIII 252269 . A G 5422.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.50;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:0,277:278:99:5422,562,0 chrIII 252377 . T C 7740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=335;Dels=0.00;FS=8.372;HaplotypeScore=17.5570;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.555;QD=23.10;ReadPosRankSum=3.404;SB=-3.905e+03 GT:AD:DP:GQ:PL 1/1:4,330:335:99:7740,811,0 chrIII 252425 . A G 8167.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=392;Dels=0.00;FS=0.000;HaplotypeScore=33.0138;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.252;QD=20.83;ReadPosRankSum=1.714;SB=-5.196e+03 GT:AD:DP:GQ:PL 1/1:1,389:392:99:8167,847,0 chrIII 252633 . A G 5658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=263;Dels=0.00;FS=2.517;HaplotypeScore=17.6411;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.248;QD=21.51;ReadPosRankSum=2.935;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:3,260:263:99:5658,592,0 chrIII 252801 . C T 5168.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.73;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5168,541,0 chrIII 253015 . G T 5317.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.1349;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.50;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5317,535,0 chrIII 253084 . G A 5392.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5392,562,0 chrIII 253152 . A G 4798.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.99;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4798,493,0 chrIII 253483 . G C 5762.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.60;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:0,248:255:99:5762,592,0 chrIII 253507 . T A 5487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=6.6885;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-1.193;QD=21.27;ReadPosRankSum=1.638;SB=-3.033e+03 GT:AD:DP:GQ:PL 1/1:1,256:258:99:5487,582,0 chrIII 253696 . G A 5741.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.83;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:5741,613,0 chrIII 253903 . C T 5624.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.22;SB=-2.916e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5624,565,0 chrIII 253963 . C T 5292.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.4414;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.94;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5292,526,0 chrIII 254180 . C T 1908 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.27;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1941,195,0 chrIII 254370 . G A 3447.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6234;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=27.58;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3447,355,0 chrIII 254715 . G A 3933.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.84;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3933,414,0 chrIII 254941 . T A 3531.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=22.63;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3531,352,0 chrIII 254947 . G T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=21.25;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3273,331,0 chrIII 254961 . T C 3176 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.62;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3209,330,0 chrIII 255150 . C T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=24.15;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3647,370,0 chrIII 255168 . A G 2742 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.0011;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.59;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2775,309,0 chrIII 255699 . C T 2537 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=25.89;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2570,264,0 chrIII 255891 . C T 3425.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3425,337,0 chrIII 256458 . A T 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.311;QD=23.07;ReadPosRankSum=1.673;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2732,285,0 chrIII 256521 . G A 2666 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=12.0247;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.92;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2699,268,0 chrIII 257049 . T C 2841 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.7378;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.10;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2874,297,0 chrIII 257205 . A C 2187 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=25.73;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2220,222,0 chrIII 257455 . T C 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=1.329;QD=21.97;ReadPosRankSum=2.937;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3197,327,0 chrIII 257462 . A C 2956 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.5299;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.82;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2989,304,0 chrIII 257484 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.02;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3249,333,0 chrIII 257531 . C G 3192 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.42;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3225,325,0 chrIII 257592 . T G 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=4.328;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.756;QD=23.27;ReadPosRankSum=1.686;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3514,358,0 chrIII 257960 . T C 4083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=159;Dels=0.00;FS=8.366;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.116;QD=25.68;ReadPosRankSum=2.419;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:4083,418,0 chrIII 258066 . T C 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=103;Dels=0.00;FS=3.033;HaplotypeScore=8.2841;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.394;QD=23.16;ReadPosRankSum=2.402;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2418,255,0 chrIII 258276 . C T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.0491;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.51;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3367,343,0 chrIII 258306 . G C 3164 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.15;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3197,333,0 chrIII 258477 . G A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.60;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3737,376,0 chrIII 258579 . T C 2840 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.9959;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.52;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2873,306,0 chrIII 258780 . T G 4476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-1.423;QD=22.27;ReadPosRankSum=2.401;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4476,445,0 chrIII 258781 . T C 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.1940;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-0.641;QD=21.31;ReadPosRankSum=2.364;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4305,439,0 chrIII 258847 . A G 2310 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4087;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=16.04;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2343,234,0 chrIII 258915 . G A 4132.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.96;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4132,430,0 chrIII 259351 . G A 1400 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=26.92;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1433,141,0 chrIII 259489 . A G 2156 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=22.46;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2189,222,0 chrIII 259496 . T C 1939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.350;QD=20.20;ReadPosRankSum=2.346;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1972,207,0 chrIII 259676 . A G 4945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=206;Dels=0.00;FS=2.269;HaplotypeScore=13.6927;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.556;QD=24.00;ReadPosRankSum=2.771;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:3,203:206:99:4945,502,0 chrIII 259724 . T C 4846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.261;QD=25.24;ReadPosRankSum=1.714;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4846,493,0 chrIII 259975 . G A 454 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.9022;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=11.64;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:51:487,51,0 chrIII 260010 . A G 141.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.064;QD=5.23;ReadPosRankSum=1.605;SB=-8.314e+01 GT:AD:DP:GQ:PL 1/1:1,26:27:18:174,18,0 chrIII 260698 . A C 5205.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.55;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,208:212:99:5205,541,0 chrIII 261312 . G A 4180.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.3770;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.39;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4180,435,0 chrIII 261331 . A G 4492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.367;QD=21.29;ReadPosRankSum=2.948;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:3,208:211:99:4492,460,0 chrIII 262105 . C T 9549.01 filter AC=2;AF=1.00;AN=2;DP=403;Dels=0.00;FS=0.000;HaplotypeScore=33.0404;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.69;SB=-4.036e+03 GT:AD:DP:GQ:PL 1/1:0,399:403:99:9549,962,0 chrIII 262154 . C T 7658.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=21.8642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-3.164e+03 GT:AD:DP:GQ:PL 1/1:0,351:353:99:7658,787,0 chrIII 262264 . T C 6840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=298;Dels=0.00;FS=8.110;HaplotypeScore=15.1850;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.891;QD=22.95;ReadPosRankSum=0.862;SB=-3.065e+03 GT:AD:DP:GQ:PL 1/1:4,294:298:99:6840,643,0 chrIII 262377 . C T 4745.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.84;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4745,475,0 chrIII 262830 . T G 2374 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.5420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2407,243,0 chrIII 263029 . A G 4268.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3930;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.35;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4268,424,0 chrIII 263282 . C T 4207.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.01;FS=0.000;HaplotypeScore=13.8637;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=22.26;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4207,459,0 chrIII 263790 . A C 2855 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2888,291,0 chrIII 264135 . A T 5729.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;QD=25.92;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5729,583,0 chrIII 264282 . C T 4817.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=10.4753;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=18.39;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:4817,505,0 chrIII 264441 . A G 5599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=17.6677;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.438;QD=22.85;ReadPosRankSum=2.429;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:2,242:245:99:5599,583,0 chrIII 264610 . T C 3402.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.83;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3402,348,0 chrIII 264634 . G A 3630.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=20.98;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3630,367,0 chrIII 264642 . T C 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=-0.414;QD=18.92;ReadPosRankSum=1.638;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3481,363,0 chrIII 264655 . T C 3915.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=19.38;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3915,403,0 chrIII 264887 . T C 6037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=264;Dels=0.00;FS=12.981;HaplotypeScore=16.3986;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-0.450;QD=22.87;ReadPosRankSum=2.896;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:3,258:264:99:6037,616,0 chrIII 265045 . C T 4577.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.52;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4577,478,0 chrIII 265059 . T C 4830.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.5401;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.00;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4830,487,0 chrIII 265091 . T C 4337.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.1795;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.36;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4337,451,0 chrIII 265240 . T C 5669.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=8.2186;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.92;SB=-3.159e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5669,586,0 chrIII 265730 . T C 4130.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.5121;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.87;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4130,418,0 chrIII 266048 . C T 3973.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=15.3645;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=25.47;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3973,406,0 chrIII 266241 . C T 4078.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.893;DP=184;Dels=0.00;FS=10.244;HaplotypeScore=12.6084;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=1.812;QD=22.16;ReadPosRankSum=2.137;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:5,179:184:99:4078,418,0 chrIII 266271 . G A 3731.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=16.96;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:3731,367,0 chrIII 266282 . C T 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=209;Dels=0.00;FS=4.430;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;MQRankSum=-0.100;QD=14.77;ReadPosRankSum=1.249;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:3120,295,0 chrIII 266283 . G C 3035 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=14.45;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:3068,321,0 chrIII 266399 . C G 4637.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.90;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4637,472,0 chrIII 266467 . C T 5762.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.2658;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.21;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5762,577,0 chrIII 269947 . A G 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=131;Dels=0.00;FS=3.044;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.846;QD=22.82;ReadPosRankSum=1.678;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3023,315,0 chrIII 270976 . A G 4825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=215;Dels=0.00;FS=7.212;HaplotypeScore=13.1671;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.451;QD=22.44;ReadPosRankSum=2.381;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:4825,499,0 chrIII 271337 . C G 11897.01 filter AC=2;AF=1.00;AN=2;DP=524;Dels=0.00;FS=0.000;HaplotypeScore=24.3831;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.70;SB=-6.810e+03 GT:AD:DP:GQ:PL 1/1:0,516:524:99:11897,1226,0 chrIII 272696 . A C 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.705;QD=24.08;ReadPosRankSum=1.678;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:3163,330,0 chrIII 273723 . T G 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=6.435;HaplotypeScore=5.8022;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=-1.870;QD=25.44;ReadPosRankSum=2.344;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3562,364,0 chrIII 273793 . G T 3601.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.28;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3601,361,0 chrIII 274530 . A G 5242.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=17.7474;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.40;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5242,544,0 chrIII 274630 . C T 7029.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=23.1003;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.24;SB=-3.981e+03 GT:AD:DP:GQ:PL 1/1:0,289:290:99:7029,727,0 chrIII 275117 . C T 4781.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.84;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4781,496,0 chrIII 277564 . G T 232.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.872;DP=134;Dels=0.00;FS=153.970;HaplotypeScore=18.2512;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=-0.559;QD=1.73;ReadPosRankSum=-5.815;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:98,34:134:99:262,0,1421 chrIII 278462 . T A 4167.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.4610;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.81;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4167,439,0 chrIII 280449 . T G 2521 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.7638;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2554,264,0 chrIII 284830 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=12.8825;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.17;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3559,355,0 chrIII 286180 . G A 1374 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1407,141,0 chrIII 286440 . A G 1588 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.70;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1621,162,0 chrIII 288008 . G C 2759 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.79;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2792,288,0 chrIII 288904 . C T 2676 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.01;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2709,270,0 chrIII 289803 . T A 4087.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=26.54;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4087,406,0 chrIII 289856 . G A 3687.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.7304;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.21;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3687,373,0 chrIII 289942 . C T 6029.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.80;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:6029,601,0 chrIII 290257 . G C 4538.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4538,475,0 chrIII 292183 . G A 1066 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.50;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1099,111,0 chrIII 292247 . C G 1067 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=19.4575;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=23.20;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1100,111,0 chrIII 292282 . C A 1625 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.02;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1658,162,0 chrIII 292937 . C T 813 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.36;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:846,81,0 chrIII 293842 . A G 3926.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=25.01;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3926,394,0 chrIII 294389 . A T 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=4.956;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=-0.096;QD=25.77;ReadPosRankSum=1.708;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3711,387,0 chrIII 295107 . A G 1719 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=24.21;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1752,177,0 chrIII 295260 . T G 690.06 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;DP=65;Dels=0.00;FS=160.011;HaplotypeScore=9.2984;MLEAC=1;MLEAF=0.500;MQ=36.51;MQ0=0;MQRankSum=-0.619;QD=10.62;ReadPosRankSum=-1.541;SB=-3.071e+00 GT:AD:DP:GQ:PL 0/1:25,39:65:16:720,0,16 chrIII 295261 . A G 704.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.072;DP=64;Dels=0.00;FS=139.329;HaplotypeScore=8.5097;MLEAC=1;MLEAF=0.500;MQ=36.02;MQ0=0;MQRankSum=-3.371;QD=11.00;ReadPosRankSum=-2.175;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:27,37:64:60:734,0,60 chrIII 296689 . C A 2302 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2524;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2335,234,0 chrIII 297919 . G A 4336.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.36;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4336,439,0 chrIII 298117 . G A 4112.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.9188;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.11;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4112,433,0 chrIII 298326 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=13.8467;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.20;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3654,364,0 chrIII 298402 . T C 3426.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1971;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.55;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3426,360,0 chrIII 298408 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.3639;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-0.065;QD=21.73;ReadPosRankSum=1.710;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3498,364,0 chrIII 298441 . C T 2978 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.40;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3011,315,0 chrIII 298548 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.43;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2852,286,0 chrIII 298597 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=19.73;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2618,273,0 chrIII 298764 . C T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.26;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3362,340,0 chrIII 298878 . C G 4039.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=24.19;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4039,409,0 chrIII 298901 . C G 4386.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=24.37;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4386,448,0 chrIII 298949 . A C 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;MQRankSum=0.843;QD=23.58;ReadPosRankSum=1.333;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4503,469,0 chrIII 299074 . C A 3742.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=19.59;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3742,370,0 chrIII 299098 . C T 4382.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=17.74;SB=-3.200e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:4382,436,0 chrIII 299137 . A G 5175.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=5.8315;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=19.68;SB=-3.485e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:5175,544,0 chrIII 299155 . C G 4995.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=18.85;SB=-3.539e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:4995,523,0 chrIII 299165 . G T 4915.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=19.82;SB=-3.240e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:4915,502,0 chrIII 299184 . C A 4127.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=19.38;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4127,418,0 chrIII 299220 . T C 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=209;Dels=0.00;FS=2.921;HaplotypeScore=9.0079;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=0.706;QD=18.62;ReadPosRankSum=2.212;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:2,205:209:99:3892,399,0 chrIII 299262 . A G 4995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=221;Dels=0.00;FS=3.532;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=0.478;QD=22.60;ReadPosRankSum=1.716;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4995,502,0 chrIII 299266 . G A 5140.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=23.58;SB=-2.996e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5140,514,0 chrIII 299288 . A G 5195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=-0.022;QD=21.83;ReadPosRankSum=1.673;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:1,234:238:99:5195,544,0 chrIII 299395 . G A 3357.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.6289;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=20.72;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3357,346,0 chrIII 299645 . T C 1227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.577;QD=22.72;ReadPosRankSum=1.668;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1260,129,0 chrIII 299659 . A G 1461 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.35;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1494,150,0 chrIII 299701 . T C 1686 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.78;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1719,174,0 chrIII 300695 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.7557;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=25.41;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3133,324,0 chrIII 300877 . A G 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=152;Dels=0.00;FS=3.010;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.524;QD=23.54;ReadPosRankSum=1.709;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3578,367,0 chrIII 301452 . A G 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.037;DP=161;Dels=0.00;FS=7.467;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.894;QD=22.55;ReadPosRankSum=4.118;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:6,154:161:99:3631,364,0 chrIII 302979 . G A 1889 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.91;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1922,189,0 chrIII 303499 . C T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3501,349,0 chrIII 304102 . A G 2799.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.795;DP=212;Dels=0.00;FS=153.297;HaplotypeScore=11.3701;MLEAC=1;MLEAF=0.500;MQ=52.25;MQ0=2;MQRankSum=-3.710;QD=13.20;ReadPosRankSum=0.011;SB=-1.431e+03 GT:AD:DP:GQ:PL 0/1:72,136:212:99:2829,0,1363 chrIII 304448 . C A 2642.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.136;DP=336;Dels=0.00;FS=0.868;HaplotypeScore=12.8391;MLEAC=1;MLEAF=0.500;MQ=56.26;MQ0=0;MQRankSum=-2.853;QD=7.86;ReadPosRankSum=-0.225;SB=-1.456e+03 GT:AD:DP:GQ:PL 0/1:162,171:336:99:2672,0,3327 chrIII 304449 . T A 2858.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.070;DP=340;Dels=0.00;FS=1.868;HaplotypeScore=12.0504;MLEAC=1;MLEAF=0.500;MQ=56.30;MQ0=0;MQRankSum=-2.166;QD=8.41;ReadPosRankSum=-0.198;SB=-1.534e+03 GT:AD:DP:GQ:PL 0/1:165,175:340:99:2888,0,3454 chrIII 304825 . G C 3747.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;DP=494;Dels=0.00;FS=2.328;HaplotypeScore=37.8356;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=0.008;QD=7.59;ReadPosRankSum=-1.146;SB=-2.311e+03 GT:AD:DP:GQ:PL 0/1:265,223:494:99:3747,0,5167 chrIII 306561 . T C 1994.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;DP=240;Dels=0.00;FS=1.020;HaplotypeScore=15.3461;MLEAC=1;MLEAF=0.500;MQ=55.62;MQ0=0;MQRankSum=-2.094;QD=8.31;ReadPosRankSum=-0.618;SB=-8.140e+02 GT:AD:DP:GQ:PL 0/1:121,117:240:99:2024,0,2604 chrIII 306575 . C T 2016.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.852;DP=229;Dels=0.00;FS=1.057;HaplotypeScore=11.2444;MLEAC=1;MLEAF=0.500;MQ=53.72;MQ0=0;MQRankSum=-5.924;QD=8.80;ReadPosRankSum=-0.548;SB=-7.210e+02 GT:AD:DP:GQ:PL 0/1:119,110:229:99:2046,0,2539 chrIII 306615 . T G 2083.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.489;DP=219;Dels=0.00;FS=1.050;HaplotypeScore=12.6189;MLEAC=1;MLEAF=0.500;MQ=55.26;MQ0=0;MQRankSum=4.896;QD=9.51;ReadPosRankSum=0.236;SB=-1.112e+03 GT:AD:DP:GQ:PL 0/1:109,109:219:99:2113,0,1989 chrIII 306783 . G A 1375.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.053;DP=192;Dels=0.00;FS=2.518;HaplotypeScore=12.7130;MLEAC=1;MLEAF=0.500;MQ=56.29;MQ0=0;MQRankSum=-3.358;QD=7.16;ReadPosRankSum=-1.034;SB=-8.060e+02 GT:AD:DP:GQ:PL 0/1:104,84:192:99:1405,0,2326 chrIII 306993 . T C 896.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.034;DP=141;Dels=0.00;FS=2.296;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=50.96;MQ0=0;MQRankSum=-0.105;QD=6.35;ReadPosRankSum=-0.208;SB=-2.360e+02 GT:AD:DP:GQ:PL 0/1:83,56:141:99:926,0,1734 chrIII 307016 . G A 604.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;DP=121;Dels=0.00;FS=5.828;HaplotypeScore=34.1551;MLEAC=1;MLEAF=0.500;MQ=43.19;MQ0=0;MQRankSum=-1.161;QD=4.99;ReadPosRankSum=-2.795;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/1:75,46:121:99:634,0,1300 chrIII 307029 . T C 335.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;DP=124;Dels=0.00;FS=1.455;HaplotypeScore=40.5370;MLEAC=1;MLEAF=0.500;MQ=39.62;MQ0=0;MQRankSum=-3.411;QD=2.70;ReadPosRankSum=-2.482;SB=-2.350e+02 GT:AD:DP:GQ:PL 0/1:72,51:124:99:365,0,1204 chrIII 307036 . C A 337.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.387;DP=122;Dels=0.03;FS=6.894;HaplotypeScore=52.8904;MLEAC=1;MLEAF=0.500;MQ=39.70;MQ0=0;MQRankSum=-4.546;QD=2.76;ReadPosRankSum=-0.886;SB=-2.300e+02 GT:AD:DP:GQ:PL 0/1:60,58:118:99:367,0,1125 chrIII 307046 . C T 417.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.819;DP=148;Dels=0.02;FS=30.655;HaplotypeScore=58.6074;MLEAC=1;MLEAF=0.500;MQ=41.17;MQ0=0;MQRankSum=-4.228;QD=2.82;ReadPosRankSum=-0.445;SB=-4.580e+02 GT:AD:DP:GQ:PL 0/1:70,75:145:99:447,0,1144 chrIII 307057 . T C 783.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.440;DP=152;Dels=0.00;FS=64.458;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=43.74;MQ0=0;MQRankSum=-4.270;QD=5.15;ReadPosRankSum=2.203;SB=-4.570e+02 GT:AD:DP:GQ:PL 0/1:61,91:152:99:813,0,994 chrIII 307149 . A T 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;DP=193;Dels=0.00;FS=128.591;HaplotypeScore=44.2469;MLEAC=1;MLEAF=0.500;MQ=50.76;MQ0=3;MQRankSum=3.902;QD=0.25;ReadPosRankSum=-1.568;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:167,26:193:79:79,0,3143 chrIII 307182 . T A 147.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.171;DP=242;Dels=0.00;FS=11.437;HaplotypeScore=14.2505;MLEAC=1;MLEAF=0.500;MQ=42.48;MQ0=5;MQRankSum=-6.104;QD=0.61;ReadPosRankSum=0.309;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:183,59:242:99:177,0,3493 chrIII 307457 . A G 1646.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.620;DP=339;Dels=0.00;FS=13.277;HaplotypeScore=15.2652;MLEAC=1;MLEAF=0.500;MQ=38.14;MQ0=18;MQRankSum=2.094;QD=4.86;ReadPosRankSum=1.676;SB=-8.100e+02 GT:AD:DP:GQ:PL 0/1:221,116:339:99:1676,0,3739 chrIII 307547 . A G 688.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.559;DP=290;Dels=0.00;FS=42.547;HaplotypeScore=4.1126;MLEAC=1;MLEAF=0.500;MQ=25.22;MQ0=75;MQRankSum=-2.828;QD=2.37;ReadPosRankSum=2.587;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:207,83:290:99:718,0,1969 chrIII 307548 . C T 720.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;DP=289;Dels=0.00;FS=30.129;HaplotypeScore=5.6899;MLEAC=1;MLEAF=0.500;MQ=25.32;MQ0=73;MQRankSum=-1.753;QD=2.49;ReadPosRankSum=2.673;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:206,81:289:99:750,0,2003 chrIII 307553 . G C 736.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;DP=281;Dels=0.00;FS=51.597;HaplotypeScore=7.9810;MLEAC=1;MLEAF=0.500;MQ=25.64;MQ0=66;MQRankSum=-1.959;QD=2.62;ReadPosRankSum=4.210;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:203,77:281:99:766,0,1940 chrIII 307557 . G A 828.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.509;DP=274;Dels=0.00;FS=57.743;HaplotypeScore=18.2226;MLEAC=1;MLEAF=0.500;MQ=25.86;MQ0=59;MQRankSum=-1.597;QD=3.02;ReadPosRankSum=3.836;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:197,77:274:99:858,0,1915 chrIII 307582 . A G 995.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;DP=201;Dels=0.00;FS=14.382;HaplotypeScore=8.4519;MLEAC=1;MLEAF=0.500;MQ=24.62;MQ0=50;MQRankSum=-0.967;QD=4.95;ReadPosRankSum=-2.477;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:126,75:201:99:1025,0,1165 chrIII 307583 . G A 1037.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.039;DP=201;Dels=0.00;FS=14.454;HaplotypeScore=8.4519;MLEAC=1;MLEAF=0.500;MQ=24.75;MQ0=49;MQRankSum=-2.411;QD=5.16;ReadPosRankSum=-2.552;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:124,77:201:99:1067,0,1179 chrIII 307595 . A T 1346.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.742;DP=178;Dels=0.00;FS=17.448;HaplotypeScore=60.2497;MLEAC=1;MLEAF=0.500;MQ=26.64;MQ0=37;MQRankSum=2.028;QD=7.56;ReadPosRankSum=-1.694;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,68:178:99:1376,0,886 chrIII 307608 . G C 1452.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.465;DP=153;Dels=0.00;FS=34.133;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=30.30;MQ0=25;MQRankSum=1.692;QD=9.49;ReadPosRankSum=0.536;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,71:153:99:1482,0,633 chrIII 307630 . G A 400.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;DP=147;Dels=0.00;FS=87.851;HaplotypeScore=46.6478;MLEAC=1;MLEAF=0.500;MQ=35.69;MQ0=8;MQRankSum=-6.121;QD=2.72;ReadPosRankSum=-6.553;SB=-3.280e+02 GT:AD:DP:GQ:PL 0/1:85,62:147:99:430,0,1516 chrIII 307674 . G A 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.269;DP=202;Dels=0.00;FS=155.140;HaplotypeScore=5.4869;MLEAC=1;MLEAF=0.500;MQ=31.30;MQ0=25;MQRankSum=-4.436;QD=0.11;ReadPosRankSum=-6.027;SB=-6.740e+02 GT:AD:DP:GQ:PL 0/1:116,86:202:53:53,0,1350 chrIII 307678 . T C 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;DP=205;Dels=0.01;FS=154.495;HaplotypeScore=19.3049;MLEAC=1;MLEAF=0.500;MQ=30.93;MQ0=27;MQRankSum=-3.645;QD=0.09;ReadPosRankSum=-5.583;SB=-6.210e+02 GT:AD:DP:GQ:PL 0/1:116,86:203:49:49,0,1356 chrIII 307679 . G A 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;DP=207;Dels=0.00;FS=160.059;HaplotypeScore=5.4869;MLEAC=1;MLEAF=0.500;MQ=30.81;MQ0=27;MQRankSum=-3.942;QD=0.12;ReadPosRankSum=-4.455;SB=-6.440e+02 GT:AD:DP:GQ:PL 0/1:121,86:207:55:55,0,1326 chrIII 307681 . T C 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;DP=207;Dels=0.00;FS=154.582;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=30.61;MQ0=29;MQRankSum=-3.719;QD=0.09;ReadPosRankSum=-4.558;SB=-6.270e+02 GT:AD:DP:GQ:PL 0/1:121,85:207:49:49,0,1302 chrIII 307682 . G A 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;DP=208;Dels=0.00;FS=155.425;HaplotypeScore=4.3425;MLEAC=1;MLEAF=0.500;MQ=30.53;MQ0=30;MQRankSum=-3.797;QD=0.12;ReadPosRankSum=-4.199;SB=-6.430e+02 GT:AD:DP:GQ:PL 0/1:122,86:208:54:54,0,1269 chrIII 307685 . A C 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;DP=211;Dels=0.00;FS=160.059;HaplotypeScore=10.1416;MLEAC=1;MLEAF=0.500;MQ=30.25;MQ0=31;MQRankSum=-3.295;QD=0.13;ReadPosRankSum=-2.880;SB=-5.950e+02 GT:AD:DP:GQ:PL 0/1:125,86:211:57:57,0,1258 chrIII 307686 . G C 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;DP=209;Dels=0.00;FS=155.140;HaplotypeScore=10.1416;MLEAC=1;MLEAF=0.500;MQ=29.92;MQ0=31;MQRankSum=-3.362;QD=0.18;ReadPosRankSum=-3.080;SB=-6.350e+02 GT:AD:DP:GQ:PL 0/1:122,86:209:67:67,0,1234 chrIII 307690 . G A 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.651;DP=208;Dels=0.00;FS=151.999;HaplotypeScore=13.2416;MLEAC=1;MLEAF=0.500;MQ=29.45;MQ0=32;MQRankSum=-2.423;QD=0.05;ReadPosRankSum=-1.110;SB=-6.820e+02 GT:AD:DP:GQ:PL 0/1:121,87:208:40:40,0,1147 chrIII 307696 . C T 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.715;DP=227;Dels=0.00;FS=173.411;HaplotypeScore=6.3054;MLEAC=1;MLEAF=0.500;MQ=27.43;MQ0=31;MQRankSum=-3.108;QD=0.25;ReadPosRankSum=-4.589;SB=-7.450e+02 GT:AD:DP:GQ:PL 0/1:116,111:227:87:87,0,1027 chrIII 307852 . A G 4264.01 filter AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=4;QD=23.43;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4264,474,0 chrIII 310319 . G C 3423.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.6001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3423,354,0 chrIII 311513 . T C 5427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.396;DP=217;Dels=0.00;FS=19.412;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=1.298;QD=25.01;ReadPosRankSum=3.380;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:4,213:217:99:5427,547,0 chrIII 312423 . G A 3065 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3098,310,0 chrIII 313333 . C G 2780 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.9554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2813,285,0 chrIII 313914 . T C 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.3716;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.585;QD=24.41;ReadPosRankSum=1.645;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3906,394,0 chrIII 315787 . A T 117.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.038;DP=161;Dels=0.00;FS=37.553;HaplotypeScore=56.8768;MLEAC=1;MLEAF=0.500;MQ=47.33;MQ0=1;MQRankSum=-9.944;QD=0.73;ReadPosRankSum=2.220;SB=-9.701e+01 GT:AD:DP:GQ:PL 0/1:103,58:161:99:147,0,2428 chrIII 315795 . T C 2277.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.738;DP=191;Dels=0.00;FS=15.621;HaplotypeScore=78.0759;MLEAC=1;MLEAF=0.500;MQ=44.86;MQ0=2;MQRankSum=11.187;QD=11.92;ReadPosRankSum=0.439;SB=-1.093e+03 GT:AD:DP:GQ:PL 0/1:83,108:191:99:2307,0,310 chrIII 315803 . G T 270.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.985;DP=209;Dels=0.00;FS=16.238;HaplotypeScore=167.7296;MLEAC=1;MLEAF=0.500;MQ=44.40;MQ0=3;MQRankSum=-11.479;QD=1.29;ReadPosRankSum=-0.001;SB=-5.720e+02 GT:AD:DP:GQ:PL 0/1:118,90:209:99:300,0,2490 chrIII 315811 . A G 136.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.186;DP=235;Dels=0.03;FS=22.917;HaplotypeScore=158.1659;MLEAC=1;MLEAF=0.500;MQ=41.89;MQ0=6;MQRankSum=-7.213;QD=0.58;ReadPosRankSum=0.259;SB=-2.220e+02 GT:AD:DP:GQ:PL 0/1:159,66:228:99:166,0,2588 chrIII 315864 . G A 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;DP=388;Dels=0.00;FS=8.067;HaplotypeScore=268.5678;MLEAC=1;MLEAF=0.500;MQ=38.67;MQ0=8;MQRankSum=-4.785;QD=0.06;ReadPosRankSum=0.106;SB=-2.700e+02 GT:AD:DP:GQ:PL 0/1:255,67:388:52:52,0,4440 chrIII 315875 . A G 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.291;DP=396;Dels=0.00;FS=1.649;HaplotypeScore=229.6395;MLEAC=1;MLEAF=0.500;MQ=39.03;MQ0=7;MQRankSum=-4.781;QD=0.03;ReadPosRankSum=1.738;SB=-1.470e+02 GT:AD:DP:GQ:PL 0/1:331,65:396:41:41,0,4795 chrIII 315954 . G C 1368.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;DP=341;Dels=0.00;FS=10.658;HaplotypeScore=60.4037;MLEAC=1;MLEAF=0.500;MQ=35.76;MQ0=7;MQRankSum=-1.704;QD=4.01;ReadPosRankSum=4.106;SB=-5.520e+02 GT:AD:DP:GQ:PL 0/1:238,100:341:99:1398,0,2965 chrIII 315995 . C A 654.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.123;DP=458;Dels=0.00;FS=29.166;HaplotypeScore=236.9505;MLEAC=1;MLEAF=0.500;MQ=27.31;MQ0=23;MQRankSum=-0.036;QD=1.43;ReadPosRankSum=-2.859;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:371,84:458:99:684,0,4031 chrIII 315996 . T G 885.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;DP=472;Dels=0.00;FS=144.715;HaplotypeScore=240.8818;MLEAC=1;MLEAF=0.500;MQ=27.28;MQ0=23;MQRankSum=-3.193;QD=1.88;ReadPosRankSum=-1.057;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:305,167:472:99:915,0,3941 chrIII 316002 . G C 841.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.279;DP=500;Dels=0.00;FS=40.187;HaplotypeScore=122.7949;MLEAC=1;MLEAF=0.500;MQ=27.06;MQ0=23;MQRankSum=-1.331;QD=1.68;ReadPosRankSum=-3.387;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:369,128:500:99:871,0,4046 chrIII 316054 . T C 350.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;DP=730;Dels=0.00;FS=27.460;HaplotypeScore=578.4384;MLEAC=1;MLEAF=0.500;MQ=24.76;MQ0=54;MQRankSum=2.014;QD=0.48;ReadPosRankSum=1.145;SB=-1.190e+02 GT:AD:DP:GQ:PL 0/1:586,143:730:99:380,0,5418 chrIII 316056 . G A 880.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.290;DP=739;Dels=0.00;FS=67.283;HaplotypeScore=712.8876;MLEAC=1;MLEAF=0.500;MQ=24.81;MQ0=54;MQRankSum=9.226;QD=1.19;ReadPosRankSum=0.093;SB=-5.890e+02 GT:AD:DP:GQ:PL 0/1:465,273:738:99:910,0,5061 chrIII 316063 . T C 707.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.771;DP=777;Dels=0.00;FS=63.507;HaplotypeScore=721.6387;MLEAC=1;MLEAF=0.500;MQ=25.56;MQ0=56;MQRankSum=1.892;QD=0.91;ReadPosRankSum=2.063;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:674,99:777:99:737,0,5758 chrIII 316065 . G A 1965.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.821;DP=761;Dels=0.01;FS=25.380;HaplotypeScore=618.4023;MLEAC=1;MLEAF=0.500;MQ=25.54;MQ0=55;MQRankSum=-8.582;QD=2.58;ReadPosRankSum=3.735;SB=-8.210e+02 GT:AD:DP:GQ:PL 0/1:319,434:755:99:1995,0,4389 chrIII 316082 . A G 604.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;DP=752;Dels=0.00;FS=96.035;HaplotypeScore=558.2464;MLEAC=1;MLEAF=0.500;MQ=26.09;MQ0=52;MQRankSum=8.976;QD=0.80;ReadPosRankSum=0.207;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:583,165:751:99:634,0,6367 chrIII 316156 . C A 471.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.097;DP=571;Dels=0.01;FS=86.514;HaplotypeScore=666.5860;MLEAC=1;MLEAF=0.500;MQ=22.89;MQ0=19;MQRankSum=-1.154;QD=0.82;ReadPosRankSum=4.136;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:397,135:564:99:501,0,3375 chrIII 316158 . C A 865.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.907;DP=538;Dels=0.00;FS=14.780;HaplotypeScore=671.0307;MLEAC=1;MLEAF=0.500;MQ=22.45;MQ0=13;MQRankSum=2.770;QD=1.61;ReadPosRankSum=-7.042;SB=-6.920e+02 GT:AD:DP:GQ:PL 0/1:311,227:538:99:895,0,2937 chrIII 316159 . C T 901.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.722;DP=529;Dels=0.00;FS=0.884;HaplotypeScore=670.0475;MLEAC=1;MLEAF=0.500;MQ=22.26;MQ0=13;MQRankSum=3.051;QD=1.70;ReadPosRankSum=-5.528;SB=-7.040e+02 GT:AD:DP:GQ:PL 0/1:187,222:529:99:931,0,2007 chrIII 316167 . T C 736.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054;DP=579;Dels=0.00;FS=44.708;HaplotypeScore=789.1915;MLEAC=1;MLEAF=0.500;MQ=21.48;MQ0=15;MQRankSum=0.338;QD=1.27;ReadPosRankSum=-1.066;SB=-2.409e+03 GT:AD:DP:GQ:PL 0/1:208,371:579:99:766,0,2038 chrIII 316198 . G A 813.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;DP=947;Dels=0.00;FS=45.790;HaplotypeScore=758.2824;MLEAC=1;MLEAF=0.500;MQ=27.29;MQ0=22;MQRankSum=3.409;QD=0.86;ReadPosRankSum=-13.675;SB=-8.501e+01 GT:AD:DP:GQ:PL 0/1:741,189:947:99:843,0,7002 chrIII 316221 . G A 2459.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.171;DP=1000;DS;Dels=0.00;FS=131.874;HaplotypeScore=241.2206;MLEAC=1;MLEAF=0.500;MQ=28.50;MQ0=18;MQRankSum=0.097;QD=2.46;ReadPosRankSum=8.591;SB=-5.460e+02 GT:AD:DP:GQ:PL 0/1:687,290:998:99:2489,0,8617 chrIII 316223 . A G 3538.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;DP=1000;DS;Dels=0.00;FS=116.812;HaplotypeScore=238.6152;MLEAC=1;MLEAF=0.500;MQ=28.69;MQ0=18;MQRankSum=-0.397;QD=3.54;ReadPosRankSum=9.922;SB=-1.005e+03 GT:AD:DP:GQ:PL 0/1:646,332:1000:99:3538,0,7495 chrIII 316267 . G A 1726.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;DP=966;DS;Dels=0.00;FS=12.903;HaplotypeScore=282.5901;MLEAC=1;MLEAF=0.500;MQ=28.38;MQ0=38;MQRankSum=-4.475;QD=1.79;ReadPosRankSum=-0.972;SB=-4.770e+02 GT:AD:DP:GQ:PL 0/1:778,188:966:99:1756,0,12912 chrIII 316307 . T C 229.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.774;DP=715;DS;Dels=0.00;FS=3.966;HaplotypeScore=278.7009;MLEAC=1;MLEAF=0.500;MQ=25.68;MQ0=45;MQRankSum=-2.770;QD=0.32;ReadPosRankSum=-9.571;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:617,86:715:99:259,0,9601 chrIII 316311 . A G 5960.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.540;DP=720;DS;Dels=0.04;FS=91.499;HaplotypeScore=521.4575;MLEAC=1;MLEAF=0.500;MQ=25.56;MQ0=43;MQRankSum=-3.571;QD=8.28;ReadPosRankSum=-7.594;SB=-3.364e+03 GT:AD:DP:GQ:PL 0/1:287,407:694:99:5960,0,4478 chrIII 316313 . T C 5772.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;DP=712;DS;Dels=0.04;FS=51.745;HaplotypeScore=666.7712;MLEAC=1;MLEAF=0.500;MQ=25.43;MQ0=43;MQRankSum=-4.775;QD=8.11;ReadPosRankSum=-4.231;SB=-2.881e+03 GT:AD:DP:GQ:PL 0/1:304,379:686:99:5772,0,4625 chrIII 316331 . A G 81.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.156;DP=561;DS;Dels=0.00;FS=63.197;HaplotypeScore=632.9218;MLEAC=1;MLEAF=0.500;MQ=22.71;MQ0=33;MQRankSum=-14.112;QD=0.14;ReadPosRankSum=-2.670;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:376,180:560:99:111,0,5498 chrIII 316343 . G C 178.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.806;DP=564;DS;Dels=0.00;FS=177.886;HaplotypeScore=90.3234;MLEAC=1;MLEAF=0.500;MQ=21.47;MQ0=25;MQRankSum=5.846;QD=0.32;ReadPosRankSum=-6.327;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:528,32:564:99:208,0,4384 chrIII 316366 . A G 291.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;DP=494;DS;Dels=0.00;FS=16.102;HaplotypeScore=89.9185;MLEAC=1;MLEAF=0.500;MQ=19.12;MQ0=22;MQRankSum=8.712;QD=0.59;ReadPosRankSum=-5.904;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:440,52:492:99:321,0,2304 chrIII 316370 . G A 339.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.104;DP=487;Dels=0.00;FS=23.077;HaplotypeScore=87.6830;MLEAC=1;MLEAF=0.500;MQ=19.05;MQ0=20;MQRankSum=9.627;QD=0.70;ReadPosRankSum=-5.638;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:423,61:485:99:369,0,2135 chrIII 316382 . G A 1145.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.642;DP=490;Dels=0.00;FS=91.664;HaplotypeScore=142.5814;MLEAC=1;MLEAF=0.500;MQ=19.62;MQ0=17;MQRankSum=5.764;QD=2.34;ReadPosRankSum=-0.605;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:325,164:490:99:1175,0,1460 chrIII 316407 . G A 700.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.017;DP=794;Dels=0.00;FS=73.375;HaplotypeScore=136.6511;MLEAC=1;MLEAF=0.500;MQ=27.33;MQ0=22;MQRankSum=-0.568;QD=0.88;ReadPosRankSum=1.457;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:644,148:794:99:730,0,7569 chrIII 316425 . T G 311.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.224;DP=881;Dels=0.00;FS=81.410;HaplotypeScore=1128.3164;MLEAC=1;MLEAF=0.500;MQ=28.96;MQ0=26;MQRankSum=-0.165;QD=0.35;ReadPosRankSum=2.608;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:658,217:879:99:341,0,9842 chrIII 316426 . G A 311.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.244;DP=881;Dels=0.00;FS=94.128;HaplotypeScore=1124.4277;MLEAC=1;MLEAF=0.500;MQ=29.05;MQ0=26;MQRankSum=-1.165;QD=0.35;ReadPosRankSum=1.990;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:656,223:881:99:341,0,9705 chrIII 316428 . G A 5819.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.109;DP=877;Dels=0.00;FS=100.489;HaplotypeScore=1116.3871;MLEAC=1;MLEAF=0.500;MQ=29.15;MQ0=26;MQRankSum=-4.226;QD=6.64;ReadPosRankSum=-0.063;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:410,467:877:99:5819,0,5982 chrIII 316431 . G A 2293.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.501;DP=912;Dels=0.00;FS=57.645;HaplotypeScore=1148.1937;MLEAC=1;MLEAF=0.500;MQ=29.37;MQ0=27;MQRankSum=-0.561;QD=2.51;ReadPosRankSum=0.667;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:694,217:912:99:2323,0,9643 chrIII 316432 . G A 106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.332;DP=915;Dels=0.00;FS=43.909;HaplotypeScore=1087.5882;MLEAC=1;MLEAF=0.500;MQ=29.39;MQ0=26;MQRankSum=-3.568;QD=0.12;ReadPosRankSum=0.119;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:773,142:915:99:136,0,11837 chrIII 316433 . G A 6157.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.440;DP=916;Dels=0.00;FS=191.748;HaplotypeScore=1053.4964;MLEAC=1;MLEAF=0.500;MQ=29.38;MQ0=26;MQRankSum=0.546;QD=6.72;ReadPosRankSum=-1.535;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:444,472:916:99:6157,0,6332 chrIII 316443 . G A 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.400;DP=1000;DS;Dels=0.00;FS=48.365;HaplotypeScore=674.1883;MLEAC=1;MLEAF=0.500;MQ=29.25;MQ0=25;MQRankSum=1.493;QD=0.05;ReadPosRankSum=-2.781;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:871,129:1000:77:77,0,12680 chrIII 316448 . G A 4054.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.741;DP=991;DS;Dels=0.00;FS=161.646;HaplotypeScore=527.1696;MLEAC=1;MLEAF=0.500;MQ=29.41;MQ0=24;MQRankSum=2.860;QD=4.09;ReadPosRankSum=-5.041;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:603,385:989:99:4054,0,8840 chrIII 316449 . G T 5112.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.028;DP=989;DS;Dels=0.00;FS=86.485;HaplotypeScore=522.0823;MLEAC=1;MLEAF=0.500;MQ=29.42;MQ0=23;MQRankSum=0.448;QD=5.17;ReadPosRankSum=-5.917;SB=-1.470e+02 GT:AD:DP:GQ:PL 0/1:386,434:989:99:5112,0,5335 chrIII 316472 . G A 1234.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.503;DP=992;DS;Dels=0.00;FS=3.462;HaplotypeScore=709.3209;MLEAC=1;MLEAF=0.500;MQ=29.58;MQ0=17;MQRankSum=-2.720;QD=1.24;ReadPosRankSum=-1.257;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:786,206:992:99:1264,0,10968 chrIII 316476 . T G 3922.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.156;DP=956;DS;Dels=0.00;FS=184.683;HaplotypeScore=548.3705;MLEAC=1;MLEAF=0.500;MQ=29.69;MQ0=17;MQRankSum=-1.269;QD=4.10;ReadPosRankSum=7.444;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:513,442:955:99:3922,0,6870 chrIII 316477 . G A 2455.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.455;DP=958;DS;Dels=0.00;FS=122.102;HaplotypeScore=945.9686;MLEAC=1;MLEAF=0.500;MQ=29.69;MQ0=17;MQRankSum=2.299;QD=2.56;ReadPosRankSum=8.009;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:513,282:957:99:2485,0,6647 chrIII 316488 . A T 85.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.834;DP=711;DS;Dels=0.00;FS=228.551;HaplotypeScore=743.3886;MLEAC=1;MLEAF=0.500;MQ=28.11;MQ0=14;MQRankSum=-3.228;QD=0.12;ReadPosRankSum=11.661;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:128,581:711:99:115,0,1697 chrIII 316489 . A G 178.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;DP=701;DS;Dels=0.00;FS=187.015;HaplotypeScore=938.2145;MLEAC=1;MLEAF=0.500;MQ=28.05;MQ0=13;MQRankSum=-2.695;QD=0.25;ReadPosRankSum=11.120;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:118,386:701:99:208,0,1636 chrIII 316490 . A G 94.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.721;DP=716;DS;Dels=0.00;FS=25.015;HaplotypeScore=939.1274;MLEAC=1;MLEAF=0.500;MQ=27.94;MQ0=12;MQRankSum=-2.047;QD=0.13;ReadPosRankSum=3.800;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:592,124:716:99:124,0,1848 chrIII 316493 . A T 2301.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.357;DP=723;DS;Dels=0.00;FS=37.357;HaplotypeScore=1093.9698;MLEAC=1;MLEAF=0.500;MQ=27.68;MQ0=12;MQRankSum=4.896;QD=3.18;ReadPosRankSum=4.118;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:459,264:723:99:2331,0,5005 chrIII 316496 . G A 1021.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.603;DP=717;DS;Dels=0.00;FS=0.000;HaplotypeScore=1172.1097;MLEAC=1;MLEAF=0.500;MQ=27.42;MQ0=11;MQRankSum=0.373;QD=1.42;ReadPosRankSum=-0.857;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:536,181:717:99:1051,0,6074 chrIII 316499 . A G 3294.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.176;DP=687;DS;Dels=0.00;FS=44.810;HaplotypeScore=1163.0905;MLEAC=1;MLEAF=0.500;MQ=27.06;MQ0=12;MQRankSum=-4.761;QD=4.79;ReadPosRankSum=3.735;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:350,335:686:99:3294,0,3324 chrIII 316502 . A G 1961.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.104;DP=657;DS;Dels=0.00;FS=27.873;HaplotypeScore=760.9936;MLEAC=1;MLEAF=0.500;MQ=27.11;MQ0=11;MQRankSum=-1.952;QD=2.98;ReadPosRankSum=2.950;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:327,182:657:99:1991,0,3293 chrIII 316518 . G A 1887.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.746;DP=532;DS;Dels=0.03;FS=31.508;HaplotypeScore=1365.0304;MLEAC=1;MLEAF=0.500;MQ=26.23;MQ0=5;MQRankSum=5.427;QD=3.55;ReadPosRankSum=1.686;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:317,200:517:99:1917,0,1962 chrIII 316525 . G T 1992.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.099;DP=483;DS;Dels=0.00;FS=20.679;HaplotypeScore=1333.7217;MLEAC=1;MLEAF=0.500;MQ=25.82;MQ0=5;MQRankSum=4.363;QD=4.12;ReadPosRankSum=0.519;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:262,221:483:99:2022,0,424 chrIII 316526 . T A 1791.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.762;DP=476;DS;Dels=0.00;FS=36.964;HaplotypeScore=1332.6819;MLEAC=1;MLEAF=0.500;MQ=25.82;MQ0=5;MQRankSum=2.266;QD=3.76;ReadPosRankSum=0.580;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:181,172:476:99:1821,0,495 chrIII 316542 . G A 102.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.344;DP=424;DS;Dels=0.03;FS=0.000;HaplotypeScore=1021.7834;MLEAC=1;MLEAF=0.500;MQ=25.23;MQ0=11;MQRankSum=1.367;QD=0.24;ReadPosRankSum=2.454;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/1:377,22:410:99:132,0,712 chrIII 316547 . G A 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.930;DP=420;DS;Dels=0.02;FS=0.000;HaplotypeScore=604.3220;MLEAC=1;MLEAF=0.500;MQ=24.95;MQ0=14;MQRankSum=1.139;QD=0.06;ReadPosRankSum=1.148;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/1:386,22:411:55:55,0,1814 chrIII 316606 . G T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;DP=56;Dels=0.04;FS=0.000;HaplotypeScore=95.7955;MLEAC=1;MLEAF=0.500;MQ=20.94;MQ0=4;MQRankSum=-0.060;QD=0.24;ReadPosRankSum=0.419;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,11:54:43:43,0,220 chrIV 105 . C A 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;DP=53;Dels=0.04;FS=0.000;HaplotypeScore=24.2856;MLEAC=1;MLEAF=0.500;MQ=24.28;MQ0=10;MQRankSum=0.109;QD=0.34;ReadPosRankSum=-1.640;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:39,12:51:48:48,0,354 chrIV 327 . T C 196.05 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;DP=83;Dels=0.00;FS=5.721;HaplotypeScore=22.4601;MLEAC=1;MLEAF=0.500;MQ=14.84;MQ0=53;MQRankSum=1.076;QD=2.36;ReadPosRankSum=1.076;SB=-8.305e+01 GT:AD:DP:GQ:PL 0/1:60,22:83:17:226,0,17 chrIV 333 . A G 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;DP=86;Dels=0.00;FS=46.119;HaplotypeScore=33.4000;MLEAC=1;MLEAF=0.500;MQ=15.51;MQ0=53;MQRankSum=-1.517;QD=0.20;ReadPosRankSum=0.965;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:80,6:86:47:47,0,223 chrIV 334 . T A 112.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.092;DP=86;Dels=0.00;FS=9.947;HaplotypeScore=34.3894;MLEAC=1;MLEAF=0.500;MQ=15.51;MQ0=53;MQRankSum=2.732;QD=1.30;ReadPosRankSum=0.660;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,16:86:99:142,0,122 chrIV 360 . A G 49.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.062;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=118.6022;MLEAC=2;MLEAF=1.00;MQ=14.71;MQ0=58;MQRankSum=-1.662;QD=0.52;ReadPosRankSum=-2.308;SB=2.03 GT:AD:DP:GQ:PL 1/1:44,52:96:9:82,9,0 chrIV 377 . C T 129.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.550;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=47.1990;MLEAC=2;MLEAF=1.00;MQ=16.72;MQ0=58;MQRankSum=-2.014;QD=1.13;ReadPosRankSum=2.655;SB=2.87 GT:AD:DP:GQ:PL 1/1:48,64:114:18:162,18,0 chrIV 435 . G A 119.26 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.38;MQ0=16;QD=2.65;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:3,42:45:15:152,15,0 chrIV 451 . T C 113.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.78;MQ0=9;MQRankSum=1.423;QD=5.66;ReadPosRankSum=-0.791;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:2,18:20:15:146,15,0 chrIV 453 . C T 110.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.739;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.78;MQ0=9;MQRankSum=1.423;QD=5.51;ReadPosRankSum=-1.107;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:5,15:20:15:143,15,0 chrIV 1359 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=2.82;MQ0=174;QD=0.10;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:173,4:178:6:49,6,0 chrIV 1368 . A G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.06;MQ0=177;QD=0.10;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:177,5:182:6:50,6,0 chrIV 1398 . G T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.26;MQ0=156;QD=0.12;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:154,6:161:6:51,6,0 chrIV 1444 . A G 41.97 filter AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.7089;MLEAC=2;MLEAF=1.00;MQ=4.69;MQ0=150;QD=0.26;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:1,158:159:9:74,9,0 chrIV 1454 . A G 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.73;MQ0=143;QD=0.14;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:143,6:149:6:52,6,0 chrIV 1459 . T C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.79;MQ0=139;QD=0.14;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:137,6:145:6:51,6,0 chrIV 1463 . C T 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.80;MQ0=138;QD=0.14;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:138,6:144:6:52,6,0 chrIV 1511 . C A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.23;MQ0=68;QD=0.30;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:58,15:73:6:53,6,0 chrIV 1612 . T C 112.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;DP=30;Dels=0.00;FS=13.570;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.79;MQ0=15;MQRankSum=0.505;QD=3.73;ReadPosRankSum=-0.072;SB=-3.898e+01 GT:AD:DP:GQ:PL 0/1:18,12:30:35:142,0,35 chrIV 1633 . T C,G 178.13 filter AC=1,1;AF=0.500,0.500;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=12.69;MQ0=15;QD=5.75;SB=-7.311e+01 GT:AD:DP:GQ:PL 1/2:0,18,13:31:29:236,180,171,56,0,29 chrIV 1635 . G T 148.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;DP=31;Dels=0.00;FS=14.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.69;MQ0=15;MQRankSum=0.673;QD=4.77;ReadPosRankSum=-0.942;SB=-4.099e+01 GT:AD:DP:GQ:PL 0/1:18,13:31:29:178,0,29 chrIV 1647 . C T 146.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;DP=31;Dels=0.00;FS=14.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.69;MQ0=15;MQRankSum=-1.345;QD=4.71;ReadPosRankSum=-1.345;SB=-3.899e+01 GT:AD:DP:GQ:PL 0/1:18,13:31:29:176,0,29 chrIV 1817 . G C 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.19;MQ0=0;QD=5.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:52,6,0 chrIV 1819 . C T 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.19;MQ0=0;QD=4.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:51,6,0 chrIV 1823 . G A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.19;MQ0=0;QD=5.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:53,6,0 chrIV 1831 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.38;MQ0=0;QD=4.16;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:52,6,0 chrIV 1834 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.38;MQ0=0;QD=3.96;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:51,6,0 chrIV 1843 . G A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=5.20;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:52,6,0 chrIV 1875 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.026;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.02;MQ0=13;MQRankSum=1.026;QD=1.17;ReadPosRankSum=-1.026;SB=1.24 GT:AD:DP:GQ:PL 1/1:15,2:17:6:51,6,0 chrIV 2008 . T G 1014 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.29;MQ0=11;QD=12.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1047,111,0 chrIV 2009 . A G 1053 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.45;MQ0=10;QD=13.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1086,111,0 chrIV 2035 . G T 884 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=25.96;MQ0=8;QD=10.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,82:88:96:917,96,0 chrIV 2046 . T G 577 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.803;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=6;MQRankSum=2.569;QD=7.30;ReadPosRankSum=4.583;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:14,65:79:72:610,72,0 chrIV 2060 . G C 679 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=7;QD=7.90;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:7,79:86:75:712,75,0 chrIV 2062 . C T 750 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=7;QD=8.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,79:86:81:783,81,0 chrIV 2066 . G T 726 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=7;QD=7.89;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:7,85:92:75:759,75,0 chrIV 2072 . T C 742 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=7;MQRankSum=-1.629;QD=7.65;ReadPosRankSum=2.395;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:9,88:97:78:775,78,0 chrIV 2076 . G A 786 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=7;QD=8.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,88:95:81:819,81,0 chrIV 2087 . A G 776 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=7;QD=8.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,86:93:84:809,84,0 chrIV 2112 . T C 668 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=6;MQRankSum=-1.732;QD=7.34;ReadPosRankSum=1.691;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:5,86:91:72:701,72,0 chrIV 2135 . G A 622 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.42;MQ0=26;QD=5.46;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:72:655,72,0 chrIV 2151 . C T 658 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=23.86;MQ0=26;QD=5.98;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:78:691,78,0 chrIV 2152 . T G 654 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=24.01;MQ0=26;QD=5.89;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:78:687,78,0 chrIV 2156 . C A 970 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=26;QD=8.02;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1003,108,0 chrIV 2584 . C A 1513 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=3;QD=16.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1546,153,0 chrIV 5408 . A T 718 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.92;MQ0=39;QD=7.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,102:102:81:751,81,0 chrIV 10720 . A G 74.51 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.86;MQ0=56;QD=1.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:12:107,12,0 chrIV 16673 . G A 6803.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.676;DP=748;Dels=0.00;FS=5.566;HaplotypeScore=57.6063;MLEAC=1;MLEAF=0.500;MQ=42.55;MQ0=0;MQRankSum=-8.602;QD=9.09;ReadPosRankSum=0.928;SB=-2.651e+03 GT:AD:DP:GQ:PL 0/1:375,368:748:99:6803,0,7410 chrIV 16752 . A G 1332.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.649;DP=479;Dels=0.00;FS=17.767;HaplotypeScore=29.9159;MLEAC=1;MLEAF=0.500;MQ=47.42;MQ0=7;MQRankSum=-11.638;QD=2.78;ReadPosRankSum=-3.884;SB=-1.880e+02 GT:AD:DP:GQ:PL 0/1:342,136:479:99:1362,0,7254 chrIV 16758 . G A 935.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409;DP=452;Dels=0.00;FS=14.322;HaplotypeScore=24.0986;MLEAC=1;MLEAF=0.500;MQ=47.22;MQ0=7;MQRankSum=-11.619;QD=2.07;ReadPosRankSum=-4.693;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:330,120:452:99:965,0,6905 chrIV 16771 . T C 974.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.318;DP=417;Dels=0.00;FS=0.000;HaplotypeScore=25.8440;MLEAC=1;MLEAF=0.500;MQ=45.65;MQ0=8;MQRankSum=-11.057;QD=2.34;ReadPosRankSum=-5.360;SB=-4.540e+02 GT:AD:DP:GQ:PL 0/1:310,105:417:99:1004,0,6755 chrIV 16779 . C T 637.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.118;DP=390;Dels=0.00;FS=16.491;HaplotypeScore=22.2433;MLEAC=1;MLEAF=0.500;MQ=45.29;MQ0=8;MQRankSum=-9.855;QD=1.63;ReadPosRankSum=-3.386;SB=-1.390e+02 GT:AD:DP:GQ:PL 0/1:295,92:390:99:667,0,6166 chrIV 16800 . T C 734.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.934;DP=374;Dels=0.00;FS=89.526;HaplotypeScore=22.1583;MLEAC=1;MLEAF=0.500;MQ=42.82;MQ0=10;MQRankSum=-7.491;QD=1.96;ReadPosRankSum=1.542;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:279,91:374:99:764,0,5279 chrIV 16806 . T C 926.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.413;DP=371;Dels=0.00;FS=104.960;HaplotypeScore=16.0535;MLEAC=1;MLEAF=0.500;MQ=40.84;MQ0=15;MQRankSum=-6.289;QD=2.50;ReadPosRankSum=2.562;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:275,94:371:99:956,0,5357 chrIV 16818 . C T 1119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;DP=376;Dels=0.00;FS=105.087;HaplotypeScore=14.4444;MLEAC=1;MLEAF=0.500;MQ=37.29;MQ0=24;MQRankSum=-5.519;QD=2.98;ReadPosRankSum=1.819;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:265,108:376:99:1149,0,4966 chrIV 16869 . A T 1533.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.406;DP=377;Dels=0.00;FS=196.768;HaplotypeScore=15.8881;MLEAC=1;MLEAF=0.500;MQ=30.54;MQ0=25;MQRankSum=0.549;QD=4.07;ReadPosRankSum=1.516;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:273,104:377:99:1563,0,4630 chrIV 16872 . C T 1473.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.048;DP=374;Dels=0.00;FS=163.745;HaplotypeScore=20.5107;MLEAC=1;MLEAF=0.500;MQ=30.30;MQ0=25;MQRankSum=0.116;QD=3.94;ReadPosRankSum=0.749;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:267,107:374:99:1503,0,4369 chrIV 16881 . G A 1553.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.972;DP=384;Dels=0.00;FS=237.352;HaplotypeScore=20.6570;MLEAC=1;MLEAF=0.500;MQ=29.16;MQ0=26;MQRankSum=0.284;QD=4.04;ReadPosRankSum=-0.710;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:267,117:384:99:1583,0,4415 chrIV 16884 . A T 1338.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.786;DP=377;Dels=0.00;FS=214.032;HaplotypeScore=13.5042;MLEAC=1;MLEAF=0.500;MQ=28.54;MQ0=26;MQRankSum=0.278;QD=3.55;ReadPosRankSum=-0.389;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:264,113:377:99:1368,0,4147 chrIV 16897 . C T 1556.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.141;DP=395;Dels=0.00;FS=236.173;HaplotypeScore=19.9863;MLEAC=1;MLEAF=0.500;MQ=32.00;MQ0=20;MQRankSum=-2.191;QD=3.94;ReadPosRankSum=-1.107;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:273,121:395:99:1586,0,4616 chrIV 16902 . C A 1535.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.950;DP=374;Dels=0.00;FS=228.582;HaplotypeScore=12.0809;MLEAC=1;MLEAF=0.500;MQ=32.94;MQ0=14;MQRankSum=-1.948;QD=4.10;ReadPosRankSum=-0.733;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:258,115:374:99:1565,0,4204 chrIV 16932 . C T 1042.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.103;DP=360;Dels=0.00;FS=210.385;HaplotypeScore=19.1231;MLEAC=1;MLEAF=0.500;MQ=38.15;MQ0=5;MQRankSum=-5.095;QD=2.89;ReadPosRankSum=1.212;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:255,102:360:99:1072,0,4216 chrIV 16977 . T C 142.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.852;DP=269;Dels=0.00;FS=114.767;HaplotypeScore=22.7623;MLEAC=1;MLEAF=0.500;MQ=46.92;MQ0=2;MQRankSum=-7.887;QD=0.53;ReadPosRankSum=0.371;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:221,45:269:99:172,0,4471 chrIV 17716 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.225;DP=178;Dels=0.00;FS=20.380;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=5.774;QD=21.16;ReadPosRankSum=-0.172;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:12,165:178:99:3767,199,0 chrIV 18195 . A C 3726.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.480;DP=274;Dels=0.00;FS=199.897;HaplotypeScore=30.1039;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=12;MQRankSum=3.277;QD=13.60;ReadPosRankSum=3.191;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:68,191:274:99:3726,131,0 chrIV 18200 . A G 3358.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.039;DP=280;Dels=0.00;FS=180.251;HaplotypeScore=29.4789;MLEAC=1;MLEAF=0.500;MQ=40.35;MQ0=12;MQRankSum=2.406;QD=11.99;ReadPosRankSum=3.079;SB=-9.680e+02 GT:AD:DP:GQ:PL 0/1:81,199:280:45:3358,0,45 chrIV 18219 . A G 2200.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DP=258;Dels=0.00;FS=363.433;HaplotypeScore=7.1725;MLEAC=1;MLEAF=0.500;MQ=41.64;MQ0=10;MQRankSum=1.784;QD=8.53;ReadPosRankSum=0.667;SB=-2.902e+01 GT:AD:DP:GQ:PL 0/1:106,151:258:99:2230,0,843 chrIV 18231 . T A 2142.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;DP=267;Dels=0.00;FS=416.451;HaplotypeScore=7.0413;MLEAC=1;MLEAF=0.500;MQ=41.17;MQ0=11;MQRankSum=0.262;QD=8.02;ReadPosRankSum=-1.033;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:118,149:267:99:2172,0,1330 chrIV 18264 . T A 1226.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.649;DP=274;Dels=0.00;FS=362.881;HaplotypeScore=17.7347;MLEAC=1;MLEAF=0.500;MQ=40.66;MQ0=5;MQRankSum=-4.193;QD=4.47;ReadPosRankSum=0.403;SB=-1.558e+00 GT:AD:DP:GQ:PL 0/1:163,111:274:99:1256,0,2727 chrIV 18279 . A G 1248.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.716;DP=266;Dels=0.00;FS=294.988;HaplotypeScore=9.6996;MLEAC=1;MLEAF=0.500;MQ=40.66;MQ0=3;MQRankSum=-5.064;QD=4.69;ReadPosRankSum=-0.237;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:166,98:266:99:1278,0,2977 chrIV 18291 . G A 1588.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.603;DP=295;Dels=0.00;FS=283.798;HaplotypeScore=20.6049;MLEAC=1;MLEAF=0.500;MQ=38.77;MQ0=4;MQRankSum=-4.211;QD=5.38;ReadPosRankSum=-1.875;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:183,112:295:99:1618,0,3048 chrIV 18303 . C T 1911.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.068;DP=287;Dels=0.00;FS=301.227;HaplotypeScore=42.2746;MLEAC=1;MLEAF=0.500;MQ=38.72;MQ0=3;MQRankSum=-5.882;QD=6.66;ReadPosRankSum=-2.774;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:159,127:287:99:1941,0,2722 chrIV 18325 . T C 1880.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.483;DP=310;Dels=0.00;FS=157.984;HaplotypeScore=46.2578;MLEAC=1;MLEAF=0.500;MQ=38.23;MQ0=4;MQRankSum=-6.308;QD=6.06;ReadPosRankSum=1.054;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:156,154:310:99:1910,0,2492 chrIV 18333 . A G 1713.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.086;DP=318;Dels=0.00;FS=290.854;HaplotypeScore=51.7786;MLEAC=1;MLEAF=0.500;MQ=37.73;MQ0=4;MQRankSum=-1.631;QD=5.39;ReadPosRankSum=2.252;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:201,117:318:99:1743,0,3113 chrIV 18342 . A G 1525.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.026;DP=323;Dels=0.00;FS=284.691;HaplotypeScore=19.1131;MLEAC=1;MLEAF=0.500;MQ=37.48;MQ0=6;MQRankSum=-1.894;QD=4.72;ReadPosRankSum=3.076;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:210,113:323:99:1555,0,3279 chrIV 18345 . G A 1586.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.963;DP=319;Dels=0.00;FS=291.049;HaplotypeScore=20.8951;MLEAC=1;MLEAF=0.500;MQ=37.52;MQ0=7;MQRankSum=-2.420;QD=4.97;ReadPosRankSum=2.678;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:208,111:319:99:1616,0,3198 chrIV 18351 . A G 1435.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571;DP=314;Dels=0.00;FS=285.701;HaplotypeScore=15.3976;MLEAC=1;MLEAF=0.500;MQ=37.68;MQ0=7;MQRankSum=-2.531;QD=4.57;ReadPosRankSum=1.822;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:204,108:314:99:1465,0,3304 chrIV 18357 . A C 1372.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;DP=300;Dels=0.00;FS=249.619;HaplotypeScore=9.2326;MLEAC=1;MLEAF=0.500;MQ=36.19;MQ0=7;MQRankSum=-0.788;QD=4.57;ReadPosRankSum=-0.131;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:195,105:300:99:1402,0,2919 chrIV 18369 . T A 1122.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.698;DP=287;Dels=0.00;FS=243.016;HaplotypeScore=25.2961;MLEAC=1;MLEAF=0.500;MQ=37.78;MQ0=8;MQRankSum=-1.770;QD=3.91;ReadPosRankSum=-0.390;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:199,88:287:99:1152,0,3149 chrIV 18376 . T C 707.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.390;DP=259;Dels=0.00;FS=214.202;HaplotypeScore=17.8661;MLEAC=1;MLEAF=0.500;MQ=38.46;MQ0=10;MQRankSum=-2.529;QD=2.73;ReadPosRankSum=-1.300;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:186,70:259:99:737,0,3221 chrIV 18377 . T C 695.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.513;DP=256;Dels=0.00;FS=218.867;HaplotypeScore=16.4916;MLEAC=1;MLEAF=0.500;MQ=38.65;MQ0=10;MQRankSum=-1.527;QD=2.71;ReadPosRankSum=-1.869;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:183,70:256:99:725,0,3135 chrIV 18387 . T C 112.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.139;DP=229;Dels=0.00;FS=179.192;HaplotypeScore=92.6189;MLEAC=1;MLEAF=0.500;MQ=40.59;MQ0=11;MQRankSum=-2.582;QD=0.49;ReadPosRankSum=-0.674;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:182,47:229:99:142,0,3305 chrIV 18388 . C G 797.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.113;DP=231;Dels=0.00;FS=42.055;HaplotypeScore=92.4247;MLEAC=1;MLEAF=0.500;MQ=40.65;MQ0=11;MQRankSum=-7.246;QD=3.45;ReadPosRankSum=1.910;SB=-2.240e+02 GT:AD:DP:GQ:PL 0/1:139,91:231:99:827,0,2480 chrIV 18389 . C T 820.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.342;DP=233;Dels=0.00;FS=41.812;HaplotypeScore=90.8568;MLEAC=1;MLEAF=0.500;MQ=40.67;MQ0=12;MQRankSum=-7.431;QD=3.52;ReadPosRankSum=1.523;SB=-2.470e+02 GT:AD:DP:GQ:PL 0/1:141,92:233:99:850,0,2477 chrIV 18396 . C T 152.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.558;DP=229;Dels=0.00;FS=141.777;HaplotypeScore=119.8603;MLEAC=1;MLEAF=0.500;MQ=40.93;MQ0=12;MQRankSum=-2.594;QD=0.66;ReadPosRankSum=-2.734;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:189,40:229:99:182,0,3359 chrIV 18399 . G A 54.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.108;DP=223;Dels=0.00;FS=114.887;HaplotypeScore=72.3521;MLEAC=1;MLEAF=0.500;MQ=40.97;MQ0=12;MQRankSum=-2.776;QD=0.24;ReadPosRankSum=-1.913;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:190,32:223:84:84,0,3251 chrIV 18531 . A T 81.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;DP=141;Dels=0.00;FS=118.393;HaplotypeScore=67.7529;MLEAC=1;MLEAF=0.500;MQ=48.16;MQ0=0;MQRankSum=-8.414;QD=0.57;ReadPosRankSum=-0.273;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,46:141:99:111,0,1940 chrIV 18540 . A G 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;DP=156;Dels=0.00;FS=242.274;HaplotypeScore=105.0862;MLEAC=1;MLEAF=0.500;MQ=46.94;MQ0=0;MQRankSum=-6.481;QD=0.11;ReadPosRankSum=0.640;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,39:156:47:47,0,2075 chrIV 18682 . A G 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.690;DP=79;Dels=0.00;FS=55.929;HaplotypeScore=4.9168;MLEAC=1;MLEAF=0.500;MQ=32.77;MQ0=6;MQRankSum=-1.692;QD=0.54;ReadPosRankSum=3.865;SB=-8.082e+01 GT:AD:DP:GQ:PL 0/1:56,23:79:73:73,0,735 chrIV 18683 . G C 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.597;DP=80;Dels=0.00;FS=54.991;HaplotypeScore=6.4394;MLEAC=1;MLEAF=0.500;MQ=33.25;MQ0=6;MQRankSum=-0.350;QD=0.45;ReadPosRankSum=4.396;SB=-7.668e+01 GT:AD:DP:GQ:PL 0/1:55,23:80:66:66,0,737 chrIV 18693 . T C 448.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.786;DP=82;Dels=0.00;FS=81.064;HaplotypeScore=7.2281;MLEAC=1;MLEAF=0.500;MQ=33.27;MQ0=6;MQRankSum=-2.358;QD=5.46;ReadPosRankSum=-4.679;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,44:82:99:478,0,350 chrIV 18696 . T G 429.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.678;DP=81;Dels=0.00;FS=95.894;HaplotypeScore=4.9168;MLEAC=1;MLEAF=0.500;MQ=33.54;MQ0=6;MQRankSum=-1.906;QD=5.30;ReadPosRankSum=-4.569;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,37:81:99:459,0,500 chrIV 19709 . A G 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.468;QD=25.27;ReadPosRankSum=1.662;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3740,379,0 chrIV 20243 . T C 2470 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.98;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2503,252,0 chrIV 21510 . A G 5724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=222;Dels=0.00;FS=2.564;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.769;QD=25.78;ReadPosRankSum=2.950;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:3,219:222:99:5724,592,0 chrIV 23647 . T C 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=118;Dels=0.00;FS=3.086;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.597;QD=25.16;ReadPosRankSum=1.702;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:3002,301,0 chrIV 26378 . T C 1036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=56;Dels=0.00;FS=7.589;HaplotypeScore=12.5426;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.167;QD=18.50;ReadPosRankSum=2.355;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:2,51:56:99:1069,111,0 chrIV 27235 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.450;QD=26.02;ReadPosRankSum=1.706;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3565,358,0 chrIV 27957 . G C 3542.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9255;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3542,361,0 chrIV 28401 . A C 2542 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=20.84;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2575,255,0 chrIV 30404 . C T 4684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=177;Dels=0.00;FS=3.346;HaplotypeScore=16.0018;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.782;QD=26.46;ReadPosRankSum=1.692;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:4684,438,0 chrIV 30826 . A C 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.3059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.395;QD=24.48;ReadPosRankSum=1.710;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:1,157:163:99:3991,406,0 chrIV 31224 . G T 3786.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.5290;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.76;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3786,373,0 chrIV 32652 . C T 5931.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=22.1666;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,233:237:99:5931,604,0 chrIV 33211 . A G 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.043;QD=25.27;ReadPosRankSum=1.703;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3091,310,0 chrIV 34063 . C T 1345 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1378,141,0 chrIV 37123 . C T 4147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.4110;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.713;QD=22.30;ReadPosRankSum=1.054;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4147,415,0 chrIV 39021 . G T 2486 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=27.62;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2519,247,0 chrIV 40439 . T C 4822.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.0368;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.25;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4822,487,0 chrIV 40965 . G C 2189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.875;QD=22.57;ReadPosRankSum=1.482;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2222,219,0 chrIV 42021 . T C 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=155;Dels=0.00;FS=5.333;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.201;QD=24.46;ReadPosRankSum=2.955;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3791,382,0 chrIV 42146 . G T 3816.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.11;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3816,379,0 chrIV 42278 . C T 4451.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.87;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4451,454,0 chrIV 42343 . G A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.52;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3408,360,0 chrIV 42970 . G A 5859.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=12.7356;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.25;SB=-2.990e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5859,574,0 chrIV 43019 . G A 5833.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=5.9773;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.14;SB=-3.279e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5833,577,0 chrIV 45363 . T C 7327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;DP=315;Dels=0.00;FS=11.053;HaplotypeScore=21.4928;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=1.316;QD=23.26;ReadPosRankSum=2.620;SB=-3.725e+03 GT:AD:DP:GQ:PL 1/1:3,311:315:99:7327,757,0 chrIV 46068 . G C 861 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.77;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:93:894,93,0 chrIV 46090 . C G 745 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=27.59;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:75:778,75,0 chrIV 46115 . G A 944 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.95;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:977,102,0 chrIV 46164 . T A 1417 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=24.86;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1450,147,0 chrIV 46179 . T G 1651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.912;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.162;QD=25.80;ReadPosRankSum=1.678;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1684,174,0 chrIV 46608 . A T 3992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=156;Dels=0.00;FS=7.779;HaplotypeScore=14.7787;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.709;QD=25.59;ReadPosRankSum=2.418;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3992,391,0 chrIV 46818 . G A 3483.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3483,363,0 chrIV 47365 . T C 4142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.0907;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.692;QD=23.67;ReadPosRankSum=1.712;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4142,424,0 chrIV 47467 . C T 3889.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0534;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.10;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3889,391,0 chrIV 48046 . A G 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=155;Dels=0.00;FS=2.752;HaplotypeScore=11.9561;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.109;QD=24.54;ReadPosRankSum=2.418;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3804,394,0 chrIV 48229 . G A 4373.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.0864;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=23.14;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4373,427,0 chrIV 48241 . T C 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.292;DP=179;Dels=0.00;FS=7.162;HaplotypeScore=5.5595;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-1.787;QD=21.36;ReadPosRankSum=4.247;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:7,169:179:99:3823,391,0 chrIV 48267 . G T 4595.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.8376;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=23.56;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4595,454,0 chrIV 48349 . G A 4559.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.90;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4559,451,0 chrIV 48393 . C T 5883.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=8.8689;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.72;SB=-3.098e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5883,607,0 chrIV 48617 . A C 7651.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=13.9661;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.67;SB=-3.421e+03 GT:AD:DP:GQ:PL 1/1:0,297:298:99:7651,775,0 chrIV 49108 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=24.43;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3185,313,0 chrIV 49133 . C T 2659 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.6936;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.94;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,123:127:99:2692,273,0 chrIV 49229 . T C 2706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=3.324;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.678;QD=20.98;ReadPosRankSum=1.705;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2739,276,0 chrIV 49375 . G C 3580.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.03;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3580,370,0 chrIV 49675 . A G 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=137;Dels=0.00;FS=7.149;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.353;QD=26.01;ReadPosRankSum=2.395;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3564,361,0 chrIV 50365 . C T 2345 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2378,231,0 chrIV 50502 . C T 1716 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1749,174,0 chrIV 51859 . T C 5845.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=14.8079;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.30;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5845,595,0 chrIV 52093 . C T 4849.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.09;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4849,496,0 chrIV 52141 . G A 5482.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.69;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5482,568,0 chrIV 52556 . G A 3932.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=14.1394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.21;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3932,400,0 chrIV 53471 . G A 5406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.247;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.9279;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.715;QD=26.63;ReadPosRankSum=1.368;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,199:203:99:5406,538,0 chrIV 53676 . A G 5287.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.82;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5287,535,0 chrIV 61039 . T C 5662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=234;Dels=0.00;FS=2.574;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.858;QD=24.20;ReadPosRankSum=2.910;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:3,230:234:99:5662,595,0 chrIV 62021 . C T 5097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=194;Dels=0.00;FS=3.171;HaplotypeScore=11.3552;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.553;QD=26.27;ReadPosRankSum=1.714;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:5097,484,0 chrIV 62075 . A G 6404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=251;Dels=0.00;FS=4.586;HaplotypeScore=15.1795;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-0.427;QD=25.51;ReadPosRankSum=2.919;SB=-3.243e+03 GT:AD:DP:GQ:PL 1/1:4,247:251:99:6404,649,0 chrIV 62145 . G C 5168.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=8.1528;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=21.09;SB=-3.425e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5168,532,0 chrIV 62157 . A G 4502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=234;Dels=0.00;FS=3.048;HaplotypeScore=9.0362;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=-0.612;QD=19.24;ReadPosRankSum=1.642;SB=-3.143e+03 GT:AD:DP:GQ:PL 1/1:1,231:234:99:4502,466,0 chrIV 62726 . T C 4214.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.7598;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.15;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4214,436,0 chrIV 62804 . A G 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.294;DP=200;Dels=0.00;FS=5.080;HaplotypeScore=9.9864;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.729;QD=16.95;ReadPosRankSum=3.416;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:4,196:200:99:3390,349,0 chrIV 62811 . A G 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.488;DP=197;Dels=0.00;FS=7.939;HaplotypeScore=17.7638;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=1.112;QD=16.61;ReadPosRankSum=3.705;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:5,190:197:99:3273,337,0 chrIV 63216 . A G 4846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=211;Dels=0.00;FS=10.550;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.412;QD=22.97;ReadPosRankSum=2.938;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:3,207:211:99:4846,487,0 chrIV 63300 . C T 4292.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=25.25;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4292,418,0 chrIV 63504 . G A 3410.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=22.14;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3410,340,0 chrIV 63528 . C T 3961.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=20.96;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3961,397,0 chrIV 63541 . G A 3548.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=18.77;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3548,355,0 chrIV 63545 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=18.38;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3493,352,0 chrIV 63653 . C T 4427.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.08;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4427,463,0 chrIV 63839 . G C 4514.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=18.4497;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.39;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,188:193:99:4514,457,0 chrIV 63900 . T A 4475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.8308;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.159;QD=25.72;ReadPosRankSum=1.712;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4475,436,0 chrIV 63927 . G A 4539.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.2780;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.52;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,185:193:99:4539,483,0 chrIV 64020 . A G 4858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.716;DP=225;Dels=0.00;FS=6.067;HaplotypeScore=23.6513;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.473;QD=21.59;ReadPosRankSum=2.933;SB=-2.950e+03 GT:AD:DP:GQ:PL 1/1:3,220:225:99:4858,496,0 chrIV 64139 . T A 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=204;Dels=0.00;FS=3.651;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.240;QD=23.17;ReadPosRankSum=1.647;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4726,475,0 chrIV 64209 . G A 3838.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.12;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3838,394,0 chrIV 64510 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.62;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3331,345,0 chrIV 64534 . G A 3356.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=27.06;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3356,340,0 chrIV 64832 . C T 2540 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.96;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2573,253,0 chrIV 64935 . G A 2367 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.76;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2400,246,0 chrIV 64950 . A G 2103 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.03;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2136,219,0 chrIV 65137 . A G 4172.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=27.09;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:4172,415,0 chrIV 65186 . T G 3719.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=26.19;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3719,379,0 chrIV 65233 . G A 3110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.396;QD=24.49;ReadPosRankSum=-1.350;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3143,288,0 chrIV 65250 . T C 2820 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9647;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.38;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2853,300,0 chrIV 65350 . T C 3945.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.91;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3945,400,0 chrIV 65400 . C T 3930.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=25.19;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3930,382,0 chrIV 65456 . G A 2283 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.83;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2316,231,0 chrIV 65891 . G A 2461 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.46;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2494,246,0 chrIV 66166 . A G 4643.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.8476;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=26.08;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4643,463,0 chrIV 66230 . T C 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.550;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.7619;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.263;QD=24.41;ReadPosRankSum=1.474;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:4223,421,0 chrIV 66347 . T A 4855.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.77;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4855,502,0 chrIV 66478 . T C 4395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.817;DP=193;Dels=0.00;FS=5.886;HaplotypeScore=17.3975;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.073;QD=22.77;ReadPosRankSum=2.911;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:3,189:193:99:4395,454,0 chrIV 66552 . G T 7562.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=21.6508;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=26.44;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:7562,757,0 chrIV 66957 . T C 8322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.198;DP=358;Dels=0.00;FS=9.005;HaplotypeScore=29.5145;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.068;QD=23.25;ReadPosRankSum=3.428;SB=-4.404e+03 GT:AD:DP:GQ:PL 1/1:4,352:358:99:8322,865,0 chrIV 67503 . T A 1984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.722;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=20.9598;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.491;QD=16.53;ReadPosRankSum=-1.299;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2017,182,0 chrIV 67529 . A C 1762 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.49;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1795,177,0 chrIV 67549 . G T 1461 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.22;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1494,150,0 chrIV 67659 . T C 1395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-1.109;QD=27.90;ReadPosRankSum=1.663;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1428,147,0 chrIV 67713 . T C 1293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.299;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=0.015;QD=22.29;ReadPosRankSum=3.207;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:4,54:58:99:1326,141,0 chrIV 67718 . A G 1442 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=28.27;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1475,150,0 chrIV 67805 . A C 1120 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=22.86;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1153,117,0 chrIV 67832 . A G 1086 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=20.49;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1119,114,0 chrIV 67845 . G C 1169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.407;DP=64;Dels=0.00;FS=3.148;HaplotypeScore=48.6683;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=1.624;QD=18.27;ReadPosRankSum=1.678;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1202,123,0 chrIV 68004 . A T 2479 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=18.64;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2512,249,0 chrIV 68082 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.6318;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=25.69;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:3064,298,0 chrIV 68190 . C A 4272.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=24.69;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4272,445,0 chrIV 68677 . T C 3970.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.36;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3970,403,0 chrIV 69136 . C T 6230.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=8.8141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6230,622,0 chrIV 69621 . G T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=17.0774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.01;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3406,352,0 chrIV 69675 . T A 4087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.256;DP=172;Dels=0.00;FS=9.056;HaplotypeScore=13.5409;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.214;QD=23.76;ReadPosRankSum=3.297;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:4,168:172:99:4087,418,0 chrIV 69990 . A G 5099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.034;QD=24.63;ReadPosRankSum=1.665;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:5099,520,0 chrIV 70023 . C T 5070.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=26.68;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:5070,496,0 chrIV 70227 . T C 4374.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.77;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4374,457,0 chrIV 70254 . T C 4091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=3.705;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.709;QD=23.24;ReadPosRankSum=1.693;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4091,412,0 chrIV 70457 . A G 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=121;Dels=0.00;FS=2.531;HaplotypeScore=10.1755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.242;QD=22.98;ReadPosRankSum=2.925;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2813,283,0 chrIV 70481 . C T 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.513;QD=23.16;ReadPosRankSum=-1.404;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2233,207,0 chrIV 70549 . A T 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.144;QD=26.24;ReadPosRankSum=1.701;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2972,298,0 chrIV 70718 . C T 2292 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.91;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2325,234,0 chrIV 70900 . G A 3578.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.02;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3578,352,0 chrIV 71168 . T G 4366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.503;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.6589;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.602;QD=23.47;ReadPosRankSum=-1.509;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4366,451,0 chrIV 71207 . C T 4401.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.80;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4401,454,0 chrIV 71264 . A G 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=202;Dels=0.00;FS=5.958;HaplotypeScore=12.2391;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.299;QD=22.64;ReadPosRankSum=2.906;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:3,199:202:99:4574,463,0 chrIV 71523 . T G 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=3.661;HaplotypeScore=6.7025;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.965;QD=24.65;ReadPosRankSum=1.688;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3894,400,0 chrIV 71645 . C T 3611.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3611,370,0 chrIV 72290 . T C 3344.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.75;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3344,343,0 chrIV 72338 . C T 2997 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.5296;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3030,312,0 chrIV 72434 . G C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=26.29;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3269,325,0 chrIV 73193 . C A 3622.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3622,370,0 chrIV 73466 . G T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.4744;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.53;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3389,340,0 chrIV 73760 . C T 3730.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=26.08;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3730,370,0 chrIV 74634 . G A 5368.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.6046;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.44;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5368,529,0 chrIV 74663 . T G 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=206;Dels=0.00;FS=3.340;HaplotypeScore=8.1370;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=-0.938;QD=21.23;ReadPosRankSum=1.715;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4374,451,0 chrIV 74701 . G A 3740.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.7043;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=18.89;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3740,382,0 chrIV 74712 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;QD=16.30;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,188:192:99:3163,330,0 chrIV 74731 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=291.8855;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=16.32;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2906,292,0 chrIV 75082 . G A 4428.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.43;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4428,451,0 chrIV 75208 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.858;QD=24.06;ReadPosRankSum=2.419;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3826,391,0 chrIV 75655 . G A 6685.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=21.5657;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.94;SB=-3.453e+03 GT:AD:DP:GQ:PL 1/1:0,266:268:99:6685,673,0 chrIV 75706 . G C 6028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=6.6032;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=1.326;QD=21.61;ReadPosRankSum=1.034;SB=-3.170e+03 GT:AD:DP:GQ:PL 1/1:1,272:279:99:6028,616,0 chrIV 75728 . T A 6626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=8.2230;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.983;QD=23.41;ReadPosRankSum=1.707;SB=-3.201e+03 GT:AD:DP:GQ:PL 1/1:1,281:283:99:6626,655,0 chrIV 76025 . A G 4021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=202;Dels=0.00;FS=2.707;HaplotypeScore=9.6962;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.796;QD=19.91;ReadPosRankSum=2.389;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4021,412,0 chrIV 76036 . G C 3931.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.9094;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=19.46;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:3931,417,0 chrIV 76252 . T A 5505.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.3559;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.47;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5505,568,0 chrIV 76567 . G A 3063 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=21.57;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3096,307,0 chrIV 76568 . G A 3012 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=21.51;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3045,301,0 chrIV 76572 . A G 3044 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=0.419;QD=22.06;ReadPosRankSum=2.396;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3077,313,0 chrIV 76795 . G C 2516 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=24.43;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2549,261,0 chrIV 76974 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=25.89;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3702,376,0 chrIV 77053 . T G 2450 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2483,249,0 chrIV 77295 . A G 3604.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.74;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3604,373,0 chrIV 77418 . T C 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.185;DP=167;Dels=0.00;FS=8.884;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.153;QD=21.65;ReadPosRankSum=3.364;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:4,162:167:99:3616,381,0 chrIV 77646 . G A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3373,340,0 chrIV 77910 . A G 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.5884;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.558;QD=21.89;ReadPosRankSum=1.703;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2638,273,0 chrIV 78181 . A G 1683 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.04;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1716,174,0 chrIV 78264 . A C 2811 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.31;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2844,288,0 chrIV 78578 . G A 5152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.568;DP=235;Dels=0.00;FS=3.667;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=1.658;QD=21.92;ReadPosRankSum=-0.155;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5152,532,0 chrIV 78587 . C T 5035.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=22.18;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5035,496,0 chrIV 78590 . A G 4863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=224;Dels=0.00;FS=11.219;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-2.259;QD=21.71;ReadPosRankSum=2.914;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:3,218:224:99:4863,490,0 chrIV 78644 . T A 4407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=210;Dels=0.00;FS=3.179;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.940;QD=20.99;ReadPosRankSum=1.666;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4407,445,0 chrIV 78875 . T A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.74;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3414,352,0 chrIV 78945 . C G 2274 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.74;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2307,240,0 chrIV 79321 . G A 1236 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=17.17;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1269,132,0 chrIV 79322 . G A 1358 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.86;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1391,138,0 chrIV 79387 . C T 2328 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=18.62;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2361,231,0 chrIV 79389 . C T 2242 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=17.79;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2275,231,0 chrIV 79474 . G A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=24.81;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3399,340,0 chrIV 79600 . T C 4604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=202;Dels=0.00;FS=3.759;HaplotypeScore=7.0009;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=-1.715;QD=22.79;ReadPosRankSum=1.698;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4604,487,0 chrIV 79621 . C T 4897.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=23.32;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4897,481,0 chrIV 79687 . T A 3776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=178;Dels=0.00;FS=3.473;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-0.564;QD=21.21;ReadPosRankSum=1.713;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3776,391,0 chrIV 79744 . G T 3215 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=21.01;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3248,328,0 chrIV 79746 . C T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=21.10;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3270,331,0 chrIV 79782 . T C 3423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.756;DP=173;Dels=0.00;FS=12.297;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.938;QD=19.79;ReadPosRankSum=2.659;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:5,168:173:99:3423,352,0 chrIV 79801 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=18.83;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3484,361,0 chrIV 79852 . A G 4731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.375;DP=207;Dels=0.00;FS=13.143;HaplotypeScore=15.2820;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=0.234;QD=22.86;ReadPosRankSum=3.315;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:4,201:207:99:4731,472,0 chrIV 79893 . T A 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=174;Dels=0.00;FS=5.560;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.751;QD=24.17;ReadPosRankSum=2.948;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:4205,415,0 chrIV 79909 . G A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.41;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3682,370,0 chrIV 80056 . C T 6670.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=11.9087;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=25.08;SB=-3.240e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6670,676,0 chrIV 80089 . G A 6027.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=24.20;SB=-3.189e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:6027,628,0 chrIV 80153 . C T 7715.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=15.4284;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=25.55;SB=-3.180e+03 GT:AD:DP:GQ:PL 1/1:0,299:302:99:7715,781,0 chrIV 80250 . C T 6684.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.01;FS=0.000;HaplotypeScore=8.7470;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=23.37;SB=-3.492e+03 GT:AD:DP:GQ:PL 1/1:0,281:284:99:6684,691,0 chrIV 80251 . C A 6754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=281;Dels=0.00;FS=2.889;HaplotypeScore=9.6614;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;MQRankSum=-1.328;QD=24.04;ReadPosRankSum=2.379;SB=-3.219e+03 GT:AD:DP:GQ:PL 1/1:2,278:281:99:6754,691,0 chrIV 80312 . G T 4668.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.9211;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=22.44;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4668,457,0 chrIV 80374 . T C 5295.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=7.7133;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=19.83;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:5295,550,0 chrIV 80379 . T C 5275.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=20.29;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5275,529,0 chrIV 80414 . G A 4075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.517;DP=228;Dels=0.00;FS=6.590;HaplotypeScore=12.8260;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;MQRankSum=1.535;QD=17.87;ReadPosRankSum=0.137;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:4075,409,0 chrIV 80430 . G T 3120 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.61;MQ0=0;QD=15.29;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,200:204:99:3153,339,0 chrIV 80440 . T A 2966 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=5.220;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;MQRankSum=0.130;QD=17.14;ReadPosRankSum=1.712;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:2999,301,0 chrIV 80445 . A T 3015 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;MQRankSum=1.056;QD=18.38;ReadPosRankSum=2.420;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3048,298,0 chrIV 80448 . C T 2846 SnpCluster AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;QD=17.79;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2879,286,0 chrIV 80454 . G C 2747 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.71;MQ0=0;QD=17.28;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2780,285,0 chrIV 80467 . G A 2526 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.53;MQ0=0;QD=16.09;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2559,258,0 chrIV 80483 . A G 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.342;DP=136;Dels=0.00;FS=5.283;HaplotypeScore=2.5585;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;MQRankSum=-0.032;QD=17.38;ReadPosRankSum=3.304;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:4,132:136:99:2397,243,0 chrIV 80506 . T C 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=120;Dels=0.00;FS=7.312;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;MQRankSum=-1.814;QD=19.37;ReadPosRankSum=2.409;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2357,237,0 chrIV 80612 . A G 2977 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=25.66;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3010,307,0 chrIV 80723 . T C 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.198;QD=25.04;ReadPosRankSum=2.418;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3907,388,0 chrIV 80742 . C A 3839.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=24.77;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3839,385,0 chrIV 80784 . G A 2533 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.7085;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=20.26;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2566,255,0 chrIV 80820 . C A 1944 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=16.34;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:1977,201,0 chrIV 80843 . A G 1866 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=15.95;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1899,192,0 chrIV 80856 . T C 1599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.86;MQ0=0;MQRankSum=-1.219;QD=14.67;ReadPosRankSum=1.700;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:1632,165,0 chrIV 80858 . G A 1556 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;QD=13.89;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1589,159,0 chrIV 80878 . T A 2215 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=18.31;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2248,219,0 chrIV 81145 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.739;QD=24.20;ReadPosRankSum=1.708;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3509,358,0 chrIV 81257 . T G 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=3.074;HaplotypeScore=11.3255;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.853;QD=24.84;ReadPosRankSum=1.682;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:3478,358,0 chrIV 81585 . T C 5044.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=26.13;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:5044,511,0 chrIV 81752 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.77;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3393,349,0 chrIV 81776 . T C 3869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=169;Dels=0.00;FS=9.595;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.943;QD=22.89;ReadPosRankSum=2.362;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3869,391,0 chrIV 81855 . C T 4432.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=24.09;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4432,448,0 chrIV 81868 . A G 4624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=188;Dels=0.00;FS=4.702;HaplotypeScore=9.3686;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-1.192;QD=24.60;ReadPosRankSum=1.527;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4624,466,0 chrIV 81963 . G A 3383.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=25.44;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3383,340,0 chrIV 82290 . C T 2196 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.13;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2229,228,0 chrIV 82312 . A G 1837 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.17;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1870,186,0 chrIV 82570 . A T 1950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=87;Dels=0.00;FS=4.160;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.322;QD=22.41;ReadPosRankSum=1.652;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1983,195,0 chrIV 82754 . A T 4625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=4.387;HaplotypeScore=9.8480;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-1.151;QD=26.73;ReadPosRankSum=1.712;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4625,463,0 chrIV 82818 . A G 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=5.079;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.420;QD=26.57;ReadPosRankSum=1.711;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:4305,430,0 chrIV 82949 . T C 6165.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.8439;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=25.37;SB=-2.890e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:6165,634,0 chrIV 83019 . T C 4805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=197;Dels=0.00;FS=8.308;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.305;QD=24.39;ReadPosRankSum=2.375;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4805,490,0 chrIV 83045 . C A 4711.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=25.33;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4711,478,0 chrIV 83082 . A G 4577.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.55;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4577,466,0 chrIV 83178 . G A 5406.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.9572;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=24.35;SB=-3.026e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5406,547,0 chrIV 83205 . A T 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.732;DP=169;Dels=0.00;FS=2.072;HaplotypeScore=1.9765;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;MQRankSum=-1.066;QD=19.47;ReadPosRankSum=2.732;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3291,395,0 chrIV 83206 . C A 3209 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=19.22;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3242,392,0 chrIV 83241 . A G 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=163;Dels=0.00;FS=3.037;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;MQRankSum=-0.811;QD=22.75;ReadPosRankSum=2.374;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3708,399,0 chrIV 83327 . C T 5303.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.44;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5303,538,0 chrIV 83419 . T G 1851 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=116.5918;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=13.04;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:1884,207,0 chrIV 83420 . C A 1708 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=115.0145;MLEAC=2;MLEAF=1.00;MQ=32.57;MQ0=0;QD=12.84;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1741,189,0 chrIV 83514 . T C 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.01;FS=3.690;HaplotypeScore=29.2811;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.613;QD=23.62;ReadPosRankSum=1.708;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3472,358,0 chrIV 83684 . A T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=24.80;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3844,388,0 chrIV 84173 . T C 4119.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.52;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4119,430,0 chrIV 84632 . G T 2991 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3024,307,0 chrIV 84947 . G T 4449.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4449,445,0 chrIV 85280 . C T 4366.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.09;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4366,430,0 chrIV 85346 . G A 3364.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.9818;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.88;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3364,337,0 chrIV 85442 . T C 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=6.992;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.366;QD=23.76;ReadPosRankSum=2.399;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3516,358,0 chrIV 85809 . A T 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.092;QD=23.26;ReadPosRankSum=1.710;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3652,364,0 chrIV 85844 . C T 2165 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.53;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2198,216,0 chrIV 85895 . C T 1326 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1359,138,0 chrIV 86111 . C A 1177 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.59;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1210,123,0 chrIV 86164 . T C 1046 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.51;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1079,108,0 chrIV 86165 . T G 1069 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.82;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1102,114,0 chrIV 86196 . G A 802 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=17.43;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:84:835,84,0 chrIV 86474 . C A 4286.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.46;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,158:162:99:4286,424,0 chrIV 86774 . C T 5614.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=17.5071;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5614,577,0 chrIV 87227 . C T 3302.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.87;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3302,328,0 chrIV 87312 . C T 4159.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.85;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4159,412,0 chrIV 87483 . G A 7687.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=28.05;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,273:274:99:7687,761,0 chrIV 88010 . A G 1893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-1.608;QD=22.54;ReadPosRankSum=1.691;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1926,195,0 chrIV 88023 . A T 125.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=77;Dels=0.00;FS=7.625;HaplotypeScore=14.0873;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.058;QD=1.62;ReadPosRankSum=5.357;SB=-4.611e+02 GT:AD:DP:GQ:PL 1/1:15,62:77:21:158,21,0 chrIV 88024 . T A 95.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.624;DP=77;Dels=0.00;FS=3.018;HaplotypeScore=13.3533;MLEAC=1;MLEAF=0.500;MQ=55.02;MQ0=0;MQRankSum=-1.125;QD=1.23;ReadPosRankSum=5.421;SB=-4.240e+02 GT:AD:DP:GQ:PL 0/1:15,62:77:71:125,0,71 chrIV 88301 . T C 3487.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=24.22;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3487,358,0 chrIV 88325 . T A 4355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=179;Dels=0.00;FS=4.605;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.493;QD=24.33;ReadPosRankSum=0.242;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4355,442,0 chrIV 88422 . G A 4555.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.36;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4555,448,0 chrIV 88441 . C T 4674.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.9546;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=24.34;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4674,460,0 chrIV 88505 . T C 4969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=217;Dels=0.00;FS=2.990;HaplotypeScore=15.8476;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.567;QD=22.90;ReadPosRankSum=2.359;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:4969,523,0 chrIV 88760 . G A 5459.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.3238;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.27;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5459,541,0 chrIV 88875 . G C 4521.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.67;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4521,466,0 chrIV 89066 . A T 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=142;Dels=0.00;FS=7.822;HaplotypeScore=9.8147;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.338;QD=25.42;ReadPosRankSum=2.380;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3609,358,0 chrIV 89384 . C T 5737.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.73;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5737,571,0 chrIV 89537 . A G 4862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=214;Dels=0.00;FS=5.978;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.127;QD=22.72;ReadPosRankSum=2.948;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:3,210:214:99:4862,484,0 chrIV 89546 . A G 4735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=211;Dels=0.00;FS=3.030;HaplotypeScore=4.8298;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.041;QD=22.44;ReadPosRankSum=2.426;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:2,208:211:99:4735,484,0 chrIV 89754 . T C 2646 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5457;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.51;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2679,270,0 chrIV 89816 . G A 2440 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=25.96;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2473,241,0 chrIV 90061 . C T 2133 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2166,213,0 chrIV 90257 . A C 3993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=5.147;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.077;QD=25.11;ReadPosRankSum=1.710;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3993,415,0 chrIV 90424 . G A 4581.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.37;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4581,451,0 chrIV 90638 . A C 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=143;Dels=0.00;FS=2.999;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.355;QD=21.32;ReadPosRankSum=2.346;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3082,313,0 chrIV 90975 . G A 3854.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.76;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3854,379,0 chrIV 91318 . T C 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=0.845;QD=23.72;ReadPosRankSum=1.703;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2903,289,0 chrIV 91325 . G T 3016 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=23.94;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3049,301,0 chrIV 91537 . A G 3321.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.55;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3321,342,0 chrIV 91642 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.07;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3265,325,0 chrIV 91837 . A G 3738.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3738,376,0 chrIV 91977 . C T 4397.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.86;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4397,433,0 chrIV 92275 . T C 2106 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=24.78;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2139,216,0 chrIV 92293 . G A 1982 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=24.47;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2015,204,0 chrIV 92350 . G A 1669 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.86;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1702,168,0 chrIV 92364 . T C 1754 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.70;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1787,183,0 chrIV 94008 . T A 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=118;Dels=0.00;FS=2.612;HaplotypeScore=7.9229;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.115;QD=25.50;ReadPosRankSum=1.324;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:3042,315,0 chrIV 94137 . T A 4204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=2.103;QD=24.73;ReadPosRankSum=2.421;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4204,450,0 chrIV 94379 . A G 6035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=250;Dels=0.00;FS=5.455;HaplotypeScore=19.9449;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.908;QD=24.14;ReadPosRankSum=2.892;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:3,247:250:99:6035,601,0 chrIV 94417 . C T 6303.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=16.8665;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.31;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:0,246:249:99:6303,628,0 chrIV 94538 . T G 5903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=18.1764;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.608;QD=25.78;ReadPosRankSum=1.686;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5903,595,0 chrIV 94648 . A G 4095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=180;Dels=0.00;FS=6.655;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.738;QD=22.75;ReadPosRankSum=2.367;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:4095,418,0 chrIV 94963 . C T 5756.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.7024;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-3.253e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5756,586,0 chrIV 95033 . C G 5829.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=11.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-3.210e+03 GT:AD:DP:GQ:PL 1/1:0,233:238:99:5829,610,0 chrIV 95432 . A G 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.521;DP=189;Dels=0.00;FS=12.804;HaplotypeScore=11.3865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.241;QD=21.17;ReadPosRankSum=4.699;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:8,181:189:99:4002,412,0 chrIV 95525 . T C 5211.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=217;Dels=0.00;FS=6.246;HaplotypeScore=15.1297;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.337;QD=24.01;ReadPosRankSum=2.427;SB=-2.938e+03 GT:AD:DP:GQ:PL 1/1:2,213:217:99:5211,535,0 chrIV 95805 . C T 66.27 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.637;DP=70;Dels=0.00;FS=4.399;HaplotypeScore=43.8091;MLEAC=1;MLEAF=0.500;MQ=47.95;MQ0=0;MQRankSum=0.985;QD=0.95;ReadPosRankSum=3.071;SB=-2.343e+02 GT:AD:DP:GQ:PL 0/1:21,48:70:9:96,0,9 chrIV 95827 . T C 906 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=12.41;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:96:939,96,0 chrIV 95862 . T A 1215 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=17.87;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1248,126,0 chrIV 96072 . T G 3444.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=27.33;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3444,346,0 chrIV 96121 . G A 2808 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.46;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2841,297,0 chrIV 96124 . T A 3108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-1.249;QD=24.09;ReadPosRankSum=1.678;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3141,304,0 chrIV 96217 . T C 4327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=0.100;QD=24.87;ReadPosRankSum=1.692;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4327,442,0 chrIV 96257 . T A 4031.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=22.77;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4031,397,0 chrIV 96268 . G A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.06;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3833,379,0 chrIV 96471 . G A 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.3495;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=0.244;QD=25.73;ReadPosRankSum=0.038;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3473,320,0 chrIV 96643 . A G 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=149;Dels=0.00;FS=6.721;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=1.377;QD=23.26;ReadPosRankSum=2.417;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3466,355,0 chrIV 96663 . G A 3790.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=25.27;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3790,370,0 chrIV 96776 . T C 2837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-1.505;QD=23.07;ReadPosRankSum=1.704;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2870,289,0 chrIV 96799 . T C 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=143;Dels=0.00;FS=10.090;HaplotypeScore=6.1421;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.440;QD=23.14;ReadPosRankSum=2.951;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:3309,351,0 chrIV 97156 . A T 4834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=188;Dels=0.00;FS=7.563;HaplotypeScore=15.4133;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.882;QD=25.71;ReadPosRankSum=2.410;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4834,493,0 chrIV 97262 . G A 4260.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=24.20;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4260,424,0 chrIV 97292 . C T 4408.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=23.45;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4408,442,0 chrIV 97315 . C G 4132.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=21.19;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4132,427,0 chrIV 97330 . G A 3534.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.1727;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=19.74;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3534,352,0 chrIV 97444 . T C 4655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=188;Dels=0.00;FS=6.137;HaplotypeScore=10.5405;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.398;QD=24.76;ReadPosRankSum=2.423;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4655,481,0 chrIV 97521 . C A 5048.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=17.5590;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=24.99;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5048,505,0 chrIV 97633 . G A 4983.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=7.3340;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.34;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,242:245:99:4983,517,0 chrIV 97639 . G T 4904.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.0912;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.26;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:4904,496,0 chrIV 97828 . T G 4789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=209;Dels=0.00;FS=5.493;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.235;QD=22.91;ReadPosRankSum=1.682;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4789,493,0 chrIV 97927 . A C 4883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.975;DP=224;Dels=0.00;FS=7.251;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.801;QD=21.80;ReadPosRankSum=4.109;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:6,218:224:99:4883,517,0 chrIV 98128 . G A 2651 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.7934;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.73;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2684,270,0 chrIV 98297 . T A 3980.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=26.53;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3980,397,0 chrIV 98322 . C A 3982.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=2.7933;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=25.04;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3982,391,0 chrIV 98345 . T C 4155.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=25.18;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4155,430,0 chrIV 98507 . C T 3660.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.24;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3660,376,0 chrIV 98744 . A G 4817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=199;Dels=0.00;FS=5.113;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.435;QD=24.21;ReadPosRankSum=1.627;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4817,511,0 chrIV 98807 . G A 3525.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3525,375,0 chrIV 99245 . G A 3791.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7281;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.78;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3791,385,0 chrIV 99689 . A G 5099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=198;Dels=0.00;FS=4.642;HaplotypeScore=14.2266;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.505;QD=25.75;ReadPosRankSum=1.662;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:5099,523,0 chrIV 99854 . G C 4612.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.8573;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.02;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4612,472,0 chrIV 99929 . A G 4483.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.01;FS=0.000;HaplotypeScore=9.7909;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.42;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4483,460,0 chrIV 100715 . A G 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=2.985;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=1.181;QD=23.71;ReadPosRankSum=2.337;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3627,370,0 chrIV 100723 . G A 3968.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=24.49;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3968,391,0 chrIV 101116 . G T 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;DP=132;Dels=0.00;FS=15.169;HaplotypeScore=8.1748;MLEAC=1;MLEAF=0.500;MQ=50.96;MQ0=0;MQRankSum=0.386;QD=0.61;ReadPosRankSum=-6.370;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,22:132:99:110,0,421 chrIV 101118 . G T 587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.582;DP=136;Dels=0.00;FS=5.181;HaplotypeScore=7.3861;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=2.604;QD=4.32;ReadPosRankSum=4.578;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:9,126:136:45:620,45,0 chrIV 101326 . T C 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.058;QD=25.42;ReadPosRankSum=1.703;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3083,307,0 chrIV 101500 . C T 4371.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.56;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4371,436,0 chrIV 101608 . G A 2972 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=24.56;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3005,298,0 chrIV 101644 . G A 3805.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=24.87;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3805,382,0 chrIV 101674 . C T 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.277;DP=154;Dels=0.00;FS=2.220;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=1.607;QD=16.83;ReadPosRankSum=3.266;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:4,150:154:99:2625,297,0 chrIV 101676 . T C 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.336;DP=157;Dels=0.01;FS=2.238;HaplotypeScore=3.9293;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=1.631;QD=16.64;ReadPosRankSum=3.291;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:4,152:156:99:2646,300,0 chrIV 101707 . C T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.83;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3362,348,0 chrIV 101871 . G A 3652.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=24.35;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3652,364,0 chrIV 101893 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=148;Dels=0.00;FS=2.667;HaplotypeScore=8.0614;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=1.652;QD=23.20;ReadPosRankSum=2.350;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3433,346,0 chrIV 102008 . G A 4850.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.13;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4850,502,0 chrIV 102115 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=25.96;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3530,349,0 chrIV 102246 . A G 2784 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2817,288,0 chrIV 102412 . C T 3748.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9631;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.15;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3748,373,0 chrIV 102509 . C T 3828.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.94;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3828,373,0 chrIV 102582 . C T 4513.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.94;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4513,454,0 chrIV 102617 . C T 4794.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.1684;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.34;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4794,481,0 chrIV 102705 . A G 4407.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.04;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4407,451,0 chrIV 102739 . G T 4326.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.30;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4326,436,0 chrIV 102985 . A G 5173.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.4760;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.06;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:5173,544,0 chrIV 103171 . T C 4581.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=22.79;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4581,478,0 chrIV 103356 . T C 4360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=0.147;QD=24.63;ReadPosRankSum=1.713;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4360,445,0 chrIV 103400 . A G 202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;MQRankSum=-0.868;QD=1.37;ReadPosRankSum=1.085;SB=-1.379e+02 GT:AD:DP:GQ:PL 1/1:1,15:147:27:235,27,0 chrIV 103421 . T G 2607 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.39;MQ0=0;QD=18.76;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2640,273,0 chrIV 103440 . G C 2426 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.74;MQ0=0;QD=17.21;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,136:141:99:2459,252,0 chrIV 103444 . C T 2297 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=36.94;MQ0=0;QD=16.89;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2330,234,0 chrIV 103456 . T C 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.278;DP=145;Dels=0.00;FS=8.933;HaplotypeScore=11.0084;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;MQRankSum=-1.865;QD=16.33;ReadPosRankSum=3.338;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:4,141:145:99:2401,243,0 chrIV 103509 . T C 3139 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=21.07;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3172,327,0 chrIV 103532 . G C 2993 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=141.6116;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.94;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3026,321,0 chrIV 103632 . C G 4279.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=16.8935;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=24.04;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4279,439,0 chrIV 103784 . A T 4386.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0615;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=25.21;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4386,439,0 chrIV 103829 . C T 4269.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.3737;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.39;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4269,427,0 chrIV 104093 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.0811;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.17;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3702,390,0 chrIV 104599 . T A 4392.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=25.24;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4392,442,0 chrIV 104780 . G A 3697.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.25;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3697,376,0 chrIV 104850 . T A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9316;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=23.05;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3504,352,0 chrIV 104854 . C T 3320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.008;DP=154;Dels=0.00;FS=6.579;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.233;QD=21.56;ReadPosRankSum=-1.181;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3320,305,0 chrIV 104927 . A C 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=148;Dels=0.00;FS=8.033;HaplotypeScore=9.6713;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.174;QD=23.03;ReadPosRankSum=2.416;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3409,355,0 chrIV 104965 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.354;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.1883;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.052;QD=25.33;ReadPosRankSum=-0.661;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4179,403,0 chrIV 105075 . T C 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=3.814;HaplotypeScore=15.3627;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=1.317;QD=22.65;ReadPosRankSum=1.708;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3249,336,0 chrIV 105197 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.3352;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.555;QD=22.92;ReadPosRankSum=1.665;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3576,370,0 chrIV 105244 . A G 2643 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.3078;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.02;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2676,267,0 chrIV 105348 . C G 3209.99 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.84;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3243,339,0 chrIV 105373 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.65;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3330,331,0 chrIV 105898 . G A 6117.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=5.8742;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.08;SB=-3.580e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6117,625,0 chrIV 105908 . T A 6107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=262;Dels=0.00;FS=6.104;HaplotypeScore=10.0316;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=1.054;QD=23.31;ReadPosRankSum=0.801;SB=-3.597e+03 GT:AD:DP:GQ:PL 1/1:2,260:262:99:6107,609,0 chrIV 106057 . C T 6134.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=14.2317;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=24.15;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:6134,601,0 chrIV 106143 . C A 5366.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.55;SB=-3.068e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5366,532,0 chrIV 106297 . A C 5476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=241;Dels=0.00;FS=3.692;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=-0.568;QD=22.72;ReadPosRankSum=1.703;SB=-2.966e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5476,559,0 chrIV 106306 . A G 5154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=238;Dels=0.00;FS=6.966;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=-1.614;QD=21.66;ReadPosRankSum=2.408;SB=-3.044e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:5154,517,0 chrIV 106320 . T C 4103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=0.289;QD=18.00;ReadPosRankSum=1.717;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:4103,433,0 chrIV 106337 . T C 4082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.266;QD=17.37;ReadPosRankSum=1.628;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:4082,427,0 chrIV 106763 . G A 3874.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.6052;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.49;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3874,382,0 chrIV 106892 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.48;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3605,378,0 chrIV 107197 . G T 5852.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.98;SB=-3.283e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5852,604,0 chrIV 107930 . T C 5801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=234;Dels=0.00;FS=10.636;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.446;QD=24.79;ReadPosRankSum=2.953;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:3,231:234:99:5801,586,0 chrIV 107994 . T C 6077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=237;Dels=0.00;FS=3.027;HaplotypeScore=10.6595;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.381;QD=25.64;ReadPosRankSum=2.397;SB=-3.385e+03 GT:AD:DP:GQ:PL 1/1:2,233:237:99:6077,610,0 chrIV 108056 . T C 4743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.3921;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.589;QD=23.95;ReadPosRankSum=1.643;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:1,194:198:99:4743,487,0 chrIV 108185 . G C 4501.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.2884;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.81;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4501,472,0 chrIV 108281 . C T 4291.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.6080;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.97;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4291,430,0 chrIV 108611 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.45;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3163,319,0 chrIV 109279 . G A 3552.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.00;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3552,349,0 chrIV 109331 . C T 2840 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=25.59;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2873,283,0 chrIV 109355 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.18;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2722,276,0 chrIV 109468 . C T 4854.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.1816;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=27.27;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4854,487,0 chrIV 109828 . C A 5212.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=5.1732;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.27;SB=-3.302e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5212,517,0 chrIV 109836 . A G 4844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=241;Dels=0.00;FS=3.292;HaplotypeScore=9.4905;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-1.181;QD=20.10;ReadPosRankSum=1.703;SB=-3.051e+03 GT:AD:DP:GQ:PL 1/1:1,238:241:99:4844,499,0 chrIV 110285 . C T 6106.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=13.2615;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.76;SB=-2.978e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:6106,607,0 chrIV 110696 . T C 4264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=181;Dels=0.00;FS=6.810;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.626;QD=23.56;ReadPosRankSum=2.408;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:4264,433,0 chrIV 111349 . A G 2669 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.91;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2702,276,0 chrIV 111716 . C T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.6982;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=26.66;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3599,355,0 chrIV 112122 . C T 4785.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.79;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4785,469,0 chrIV 112233 . A G 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.292;DP=179;Dels=0.00;FS=17.662;HaplotypeScore=9.2047;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.627;QD=21.25;ReadPosRankSum=3.390;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:4,175:179:99:3804,391,0 chrIV 112236 . C T 3828.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.02;FS=0.000;HaplotypeScore=4.6829;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.65;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3828,376,0 chrIV 112284 . T C 4596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=203;Dels=0.00;FS=2.676;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.442;QD=22.64;ReadPosRankSum=2.365;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4596,472,0 chrIV 112308 . C T 5873.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.97;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5873,577,0 chrIV 112515 . C T 5887.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=5.0512;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.53;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5887,583,0 chrIV 112560 . A G 4588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=208;Dels=0.00;FS=2.666;HaplotypeScore=19.0427;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.480;QD=22.06;ReadPosRankSum=2.426;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:4588,475,0 chrIV 112809 . T C 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.382;QD=24.79;ReadPosRankSum=1.713;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4412,457,0 chrIV 113295 . T C 2636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=111;Dels=0.00;FS=9.308;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-0.056;QD=23.75;ReadPosRankSum=2.360;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2669,276,0 chrIV 113442 . T C 3042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=132;Dels=0.00;FS=2.582;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-0.015;QD=23.05;ReadPosRankSum=2.886;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:3075,313,0 chrIV 113458 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=20.98;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3012,295,0 chrIV 113472 . A T 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=5.717;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=0.276;QD=18.83;ReadPosRankSum=1.682;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2631,259,0 chrIV 113491 . A C 2277 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=16.04;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2310,237,0 chrIV 113547 . G A 2499 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=17.00;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2532,273,0 chrIV 113548 . T A 2715 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.7202;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=18.47;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2748,276,0 chrIV 113554 . T C 2609 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=153;Dels=0.00;FS=5.458;HaplotypeScore=6.6173;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;MQRankSum=-1.428;QD=17.05;ReadPosRankSum=2.875;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:2642,270,0 chrIV 113998 . A T 5487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.499;QD=24.72;ReadPosRankSum=1.716;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:5487,538,0 chrIV 114010 . T G 4990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=229;Dels=0.00;FS=5.347;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=1.145;QD=21.79;ReadPosRankSum=1.408;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:3,226:229:99:4990,491,0 chrIV 114144 . T A 3505.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5577;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.91;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3505,346,0 chrIV 114147 . C T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.47;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3306,348,0 chrIV 114170 . T G 2910 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.38;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2943,292,0 chrIV 114279 . A T 2263 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.5181;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.60;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2296,228,0 chrIV 114379 . T C 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.380;QD=25.20;ReadPosRankSum=2.358;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2729,285,0 chrIV 114468 . C T 1905 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.68;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1938,195,0 chrIV 114755 . T C 1981 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.08;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2014,207,0 chrIV 114797 . T C 2175 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.89;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2208,228,0 chrIV 115009 . T C 4421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.264;QD=24.03;ReadPosRankSum=1.657;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4421,474,0 chrIV 115035 . A C 4187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=178;Dels=0.00;FS=12.658;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.232;QD=23.52;ReadPosRankSum=2.961;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:4187,442,0 chrIV 115328 . T C 4217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=155;Dels=0.00;FS=5.718;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.201;QD=27.21;ReadPosRankSum=2.916;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:4217,439,0 chrIV 115541 . T A 5196.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.8097;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=26.51;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5196,520,0 chrIV 115568 . C T 4475.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.80;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:4475,457,0 chrIV 115605 . C T 3795.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.02;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3795,370,0 chrIV 116227 . A G 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.4324;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.872;QD=23.90;ReadPosRankSum=1.708;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3489,361,0 chrIV 116332 . T C 4224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=165;Dels=0.00;FS=2.455;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.360;QD=25.60;ReadPosRankSum=2.958;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:4224,436,0 chrIV 116482 . A G 4706.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=1;QD=24.64;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4706,475,0 chrIV 117241 . G A 1386 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=21.00;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1419,147,0 chrIV 117248 . C T 1572 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.83;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1605,165,0 chrIV 117352 . G A 1742 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=19.14;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1775,183,0 chrIV 117353 . G A 1873 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=20.81;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1906,183,0 chrIV 117362 . T C 1735 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=19.94;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1768,180,0 chrIV 117409 . A T 1556 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=15.56;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1589,156,0 chrIV 117441 . T C 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=125.5736;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-0.392;QD=19.68;ReadPosRankSum=2.951;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:3,142:145:99:2887,295,0 chrIV 117532 . G A 2248 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=21.62;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2281,228,0 chrIV 117622 . T C 4808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-1.513;QD=25.31;ReadPosRankSum=1.696;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4808,487,0 chrIV 117705 . T A 3722.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=26.59;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3722,373,0 chrIV 117799 . C T 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.268;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-0.614;QD=23.18;ReadPosRankSum=-0.150;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3000,295,0 chrIV 117891 . T C 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=117;Dels=0.00;FS=4.347;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.288;QD=23.50;ReadPosRankSum=1.673;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2782,280,0 chrIV 117913 . A G 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.976;QD=23.13;ReadPosRankSum=1.669;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2577,261,0 chrIV 117959 . C T 2163 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.2359;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.01;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2196,213,0 chrIV 118023 . A G 1885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=82;Dels=0.00;FS=2.606;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.346;QD=22.99;ReadPosRankSum=2.914;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1918,198,0 chrIV 118053 . G A 2449 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=24.74;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2482,249,0 chrIV 118130 . A G 3148 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=14.3476;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=24.98;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:3181,328,0 chrIV 118971 . T C 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.496;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.0455;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.754;QD=21.88;ReadPosRankSum=0.194;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3741,376,0 chrIV 118983 . A G 3678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.279;QD=21.02;ReadPosRankSum=1.692;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3678,376,0 chrIV 119301 . G A 4787.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=15.1991;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.70;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4787,481,0 chrIV 119568 . C T 4995.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.4299;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.13;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,203:207:99:4995,487,0 chrIV 119603 . A G 4268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=18.5247;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.871;QD=23.07;ReadPosRankSum=2.396;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:2,180:185:99:4268,436,0 chrIV 120030 . C T 4918.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.22;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4918,511,0 chrIV 120144 . A G 4340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=3.110;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.964;QD=24.52;ReadPosRankSum=1.693;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4340,457,0 chrIV 120336 . T G 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.631;QD=23.30;ReadPosRankSum=1.672;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4054,421,0 chrIV 120465 . A G 4100.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.31;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4100,415,0 chrIV 121089 . C T 4030.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.29;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4030,412,0 chrIV 121098 . A G 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=171;Dels=0.00;FS=9.144;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.740;QD=22.42;ReadPosRankSum=2.363;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3834,385,0 chrIV 121593 . G A 3552.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.92;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3552,370,0 chrIV 121624 . T C 4373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=173;Dels=0.00;FS=3.018;HaplotypeScore=9.7323;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.157;QD=25.28;ReadPosRankSum=2.421;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4373,436,0 chrIV 121676 . A G 5101.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.1028;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=26.85;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5101,514,0 chrIV 121939 . T A 2057 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=24.20;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2090,207,0 chrIV 121955 . T C 1578 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.23;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1611,171,0 chrIV 122163 . C T 2341 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.30;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2374,234,0 chrIV 122524 . G A 4715.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=25.21;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4715,487,0 chrIV 122546 . G A 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.3342;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.346;QD=23.63;ReadPosRankSum=-0.485;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:1,174:179:99:4229,439,0 chrIV 122569 . A G 4169.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.3242;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=23.69;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4169,427,0 chrIV 122596 . A G 3814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.743;DP=170;Dels=0.00;FS=6.092;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.299;QD=22.44;ReadPosRankSum=2.934;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:3,165:170:99:3814,391,0 chrIV 122629 . C T 4636.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.1294;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=26.04;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4636,463,0 chrIV 122656 . T C 4766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=3.195;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.090;QD=24.82;ReadPosRankSum=1.696;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4766,490,0 chrIV 122724 . G A 6532.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=27.10;SB=-3.243e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:6532,640,0 chrIV 123113 . C A 3866.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=15.5152;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3866,405,0 chrIV 123193 . C A 5241.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.93;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5241,529,0 chrIV 123439 . A G 4495.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.1227;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.43;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4495,460,0 chrIV 123739 . T A 1223 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.52;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1256,126,0 chrIV 123745 . A G 1022 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.23;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1055,108,0 chrIV 124321 . C T 5530.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.80;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5530,568,0 chrIV 124630 . A G 5476.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=254;Dels=0.00;FS=7.810;HaplotypeScore=19.1022;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=11;MQRankSum=-1.139;QD=21.56;ReadPosRankSum=0.749;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:16,235:254:99:5476,502,0 chrIV 124666 . C T 5439.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=15.8547;MLEAC=2;MLEAF=1.00;MQ=39.04;MQ0=2;QD=22.29;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5439,541,0 chrIV 124962 . C T 3689.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.77;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3689,364,0 chrIV 125130 . T C 3389.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.48;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3389,340,0 chrIV 125401 . A T 3154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=126;Dels=0.00;FS=7.406;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.766;QD=25.03;ReadPosRankSum=2.411;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:3187,316,0 chrIV 126391 . C T 1207 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=17.75;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1240,129,0 chrIV 126416 . T C 1141 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.11;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1174,117,0 chrIV 126981 . C T 4699.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4699,463,0 chrIV 127692 . A G 6294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=258;Dels=0.00;FS=2.766;HaplotypeScore=16.6575;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.870;QD=24.40;ReadPosRankSum=2.431;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:2,256:258:99:6294,652,0 chrIV 127767 . A T 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=190;Dels=0.00;FS=2.565;HaplotypeScore=10.6617;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;MQRankSum=-2.335;QD=22.94;ReadPosRankSum=2.931;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:3,186:190:99:4359,451,0 chrIV 127782 . C T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;QD=22.70;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3564,369,0 chrIV 127800 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=22.05;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3076,318,0 chrIV 127812 . C T 2594 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.24;MQ0=0;QD=20.11;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2627,282,0 chrIV 127834 . G A 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;MQRankSum=-1.643;QD=19.63;ReadPosRankSum=-0.548;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2369,219,0 chrIV 127854 . T C 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=6.679;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-0.860;QD=19.41;ReadPosRankSum=1.655;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2654,285,0 chrIV 127869 . C T 3034 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4814;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.22;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3067,306,0 chrIV 127965 . C T 4063.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=24.33;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4063,409,0 chrIV 127974 . A G 3697.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=23.40;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3697,378,0 chrIV 128025 . C T 2040 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=0;QD=15.45;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2073,213,0 chrIV 128029 . A G 1764 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=7.236;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=0;MQRankSum=-1.214;QD=13.89;ReadPosRankSum=1.705;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:1797,189,0 chrIV 128034 . T C 1414 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=0;MQRankSum=-1.336;QD=12.09;ReadPosRankSum=2.940;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:3,114:117:99:1447,153,0 chrIV 128040 . G T 1385 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.8606;MLEAC=2;MLEAF=1.00;MQ=29.80;MQ0=0;QD=13.07;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1418,150,0 chrIV 128052 . C T 1180 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=10.54;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1213,129,0 chrIV 128061 . A G 1486 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.33;MQ0=0;QD=13.04;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1519,159,0 chrIV 128121 . A G 4252.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=22.74;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4252,433,0 chrIV 128328 . A G 5711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=234;Dels=0.00;FS=2.952;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=1.659;QD=24.41;ReadPosRankSum=2.407;SB=-2.950e+03 GT:AD:DP:GQ:PL 1/1:2,231:234:99:5711,571,0 chrIV 128361 . T C 5160.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=23.89;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5160,535,0 chrIV 128418 . C T 4818.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=25.36;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4818,496,0 chrIV 128454 . T C 4090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=179;Dels=0.00;FS=13.386;HaplotypeScore=7.9030;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;MQRankSum=0.710;QD=22.85;ReadPosRankSum=2.926;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:3,174:179:99:4090,438,0 chrIV 128461 . A G 4010.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.7051;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=23.18;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4010,426,0 chrIV 128484 . G A 4178.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=22.34;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4178,429,0 chrIV 128506 . G A 3875.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=21.41;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3875,402,0 chrIV 128538 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;QD=19.17;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3278,348,0 chrIV 128571 . C T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.3623;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=19.43;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3342,351,0 chrIV 128577 . T C 3419.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.2434;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=20.35;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3419,357,0 chrIV 128589 . T C 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.367;DP=171;Dels=0.00;FS=14.755;HaplotypeScore=6.8208;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;MQRankSum=0.240;QD=21.81;ReadPosRankSum=3.378;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:4,167:171:99:3729,387,0 chrIV 128619 . T C 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=163;Dels=0.00;FS=6.658;HaplotypeScore=5.0773;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;MQRankSum=0.294;QD=21.96;ReadPosRankSum=2.419;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3580,393,0 chrIV 128679 . T C 1864 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;QD=21.67;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1897,222,0 chrIV 128682 . T A 1610 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=3.823;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.94;MQ0=0;MQRankSum=-0.042;QD=19.63;ReadPosRankSum=1.648;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1643,192,0 chrIV 128688 . T C 1352 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=0;QD=18.27;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1385,167,0 chrIV 128691 . C T 1349 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=0;QD=18.23;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1382,164,0 chrIV 128715 . A G 1512 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.80;MQ0=0;QD=17.18;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1545,177,0 chrIV 128717 . T C 1520 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=11.059;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.67;MQ0=0;MQRankSum=-2.366;QD=17.27;ReadPosRankSum=2.394;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1553,177,0 chrIV 128721 . G T 1507 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=0;QD=15.07;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1540,174,0 chrIV 128724 . T C 1653 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=4.985;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=0;MQRankSum=-1.599;QD=15.89;ReadPosRankSum=1.699;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1686,195,0 chrIV 128772 . T C 2311 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.34;MQ0=0;QD=17.51;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2344,252,0 chrIV 128775 . T C 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.739;DP=136;Dels=0.00;FS=11.369;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;MQRankSum=-1.545;QD=17.62;ReadPosRankSum=2.918;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2430,252,0 chrIV 128823 . G T 2426 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=43.21;MQ0=0;QD=16.97;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2459,258,0 chrIV 128861 . C T 1999 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=0;QD=15.14;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2032,213,0 chrIV 128866 . G A 1773 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;QD=13.74;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1806,201,0 chrIV 128873 . C T 1511 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.76;MQ0=0;QD=12.59;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1544,165,0 chrIV 128885 . G A 944 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=9.44;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:977,105,0 chrIV 128886 . C G 927 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=9.27;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:960,105,0 chrIV 128913 . G A 971 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.99;MQ0=0;QD=8.52;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1004,108,0 chrIV 128920 . G A 1039 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.86;MQ0=0;QD=9.28;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1072,108,0 chrIV 128931 . T C 1292 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.60;MQ0=0;MQRankSum=-1.197;QD=9.50;ReadPosRankSum=1.707;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:1,135:136:99:1325,141,0 chrIV 128934 . G A 1468 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=0;QD=10.34;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:1501,156,0 chrIV 128940 . T C 1578 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.7294;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=0;MQRankSum=-1.534;QD=10.31;ReadPosRankSum=2.385;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:2,151:153:99:1611,168,0 chrIV 129117 . T C 4254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=173;Dels=0.00;FS=8.681;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;MQRankSum=-1.228;QD=24.59;ReadPosRankSum=2.393;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4254,439,0 chrIV 129270 . G A 4811.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.5967;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=27.97;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4811,469,0 chrIV 129666 . G T 4510.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4510,448,0 chrIV 130517 . G T 3145 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=24.57;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3178,310,0 chrIV 130640 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.86;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3481,346,0 chrIV 130711 . G A 2744 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=24.28;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2777,280,0 chrIV 130729 . T A 2225 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=22.47;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2258,222,0 chrIV 130730 . T A 2246 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=22.69;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2279,225,0 chrIV 130869 . C A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.78;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3321,328,0 chrIV 130967 . C A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=28.19;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3721,361,0 chrIV 131075 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.10;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3263,331,0 chrIV 131141 . G A 4670.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4670,463,0 chrIV 131453 . T A 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=115;Dels=0.00;FS=8.407;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.353;QD=23.36;ReadPosRankSum=2.279;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2719,271,0 chrIV 131512 . A G 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.556;QD=23.81;ReadPosRankSum=1.669;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2652,270,0 chrIV 131600 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.43;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3160,316,0 chrIV 131625 . C A 3411.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.54;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3411,352,0 chrIV 131989 . T C 4487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.604;QD=23.62;ReadPosRankSum=1.695;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4487,469,0 chrIV 132120 . G C 4776.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.2410;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=25.40;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4776,490,0 chrIV 132148 . T G 4301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=3.992;HaplotypeScore=9.5575;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.431;QD=24.72;ReadPosRankSum=1.692;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4301,439,0 chrIV 132259 . G A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=24.05;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3631,358,0 chrIV 132281 . A T 2964 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.80;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2997,298,0 chrIV 132560 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.55;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2906,300,0 chrIV 134162 . T C 3961.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.241;DP=384;Dels=0.00;FS=22.117;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=170;MQRankSum=3.901;QD=10.32;ReadPosRankSum=-4.169;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:106,278:384:99:3961,153,0 chrIV 134327 . C A 8576.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.076;DP=391;Dels=0.00;FS=16.247;HaplotypeScore=36.4249;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=34;MQRankSum=3.764;QD=21.93;ReadPosRankSum=-0.068;SB=-4.389e+03 GT:AD:DP:GQ:PL 1/1:22,369:391:99:8576,821,0 chrIV 135044 . C T 4644.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.4891;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.34;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4644,490,0 chrIV 135298 . T A 3872.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.25;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3872,391,0 chrIV 135409 . A G 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.371;QD=22.64;ReadPosRankSum=2.365;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2659,276,0 chrIV 136069 . G A 4306.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4306,430,0 chrIV 136202 . G A 5045.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=19.8629;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.01;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:5045,511,0 chrIV 136516 . C G 6909.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=18.0674;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.16;SB=-3.904e+03 GT:AD:DP:GQ:PL 1/1:0,283:286:99:6909,706,0 chrIV 136920 . T C 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=140;Dels=0.00;FS=5.495;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=1.616;QD=24.54;ReadPosRankSum=2.950;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:3,136:140:99:3435,346,0 chrIV 136940 . A G 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=3.730;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=1.131;QD=22.90;ReadPosRankSum=1.660;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3344,343,0 chrIV 136987 . G A 3112 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.61;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3145,327,0 chrIV 137047 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.82;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3153,330,0 chrIV 137351 . T C 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=4.019;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.127;QD=23.76;ReadPosRankSum=1.711;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3920,397,0 chrIV 137410 . A G 3400.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3400,349,0 chrIV 137511 . C G 1906 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,78:82:99:1939,195,0 chrIV 137766 . C A 1447 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.34;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1480,150,0 chrIV 137808 . C T 1046 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=26.82;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1079,105,0 chrIV 137867 . G T 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.149;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=44.75;MQ0=0;MQRankSum=-1.359;QD=2.00;ReadPosRankSum=-2.763;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,6:19:68:68,0,112 chrIV 137877 . C T 323 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.15;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:36:356,36,0 chrIV 138088 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=26.88;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3468,337,0 chrIV 138482 . A G 5045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=200;Dels=0.00;FS=3.098;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.589;QD=25.23;ReadPosRankSum=1.663;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:5045,520,0 chrIV 138658 . G A 3747.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.49;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3747,370,0 chrIV 138846 . C T 4059.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.06;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:4059,397,0 chrIV 139234 . T A 2619 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.18;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2652,267,0 chrIV 139426 . C A 2457 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.62;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2490,258,0 chrIV 139681 . C A 2782 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.99;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2815,285,0 chrIV 140808 . T C 4225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=194;Dels=0.00;FS=3.003;HaplotypeScore=5.6367;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-0.627;QD=21.78;ReadPosRankSum=2.374;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4225,436,0 chrIV 140835 . A C 4325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.7542;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=0.999;QD=20.60;ReadPosRankSum=1.715;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:1,207:210:99:4325,445,0 chrIV 140862 . C T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.23;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3970,394,0 chrIV 141006 . G A 2189 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.7335;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.46;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2222,222,0 chrIV 141245 . T A 5009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.2329;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.344;QD=28.62;ReadPosRankSum=2.393;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:2,173:175:99:5009,502,0 chrIV 141469 . C T 4027.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=15.0461;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.27;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4027,397,0 chrIV 141505 . G T 5204.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5204,517,0 chrIV 141575 . G A 4478.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.3378;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.08;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4478,454,0 chrIV 141605 . G A 3949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=166;Dels=0.00;FS=4.155;HaplotypeScore=10.5593;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.331;QD=23.79;ReadPosRankSum=1.648;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3949,370,0 chrIV 141921 . G A 4793.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.0661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.39;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4793,469,0 chrIV 142603 . T C 4764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.7800;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.209;QD=24.94;ReadPosRankSum=1.623;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4764,484,0 chrIV 142711 . G A 4556.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.12;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4556,445,0 chrIV 142762 . A G 4310.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.88;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4310,445,0 chrIV 142799 . C T 4462.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.1697;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.31;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4462,436,0 chrIV 143626 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.78;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3420,343,0 chrIV 143653 . T C 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=3.745;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.038;QD=23.49;ReadPosRankSum=1.681;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3204,333,0 chrIV 143902 . C G 2029 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=18.61;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2062,213,0 chrIV 143903 . C T 1997 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=18.32;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2030,207,0 chrIV 144208 . G A 4068.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6220;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.94;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4068,400,0 chrIV 144646 . T C 3227.04 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.26;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3260,339,0 chrIV 144796 . G T 4215.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.8278;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.29;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4215,421,0 chrIV 145562 . G C 4604.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.8773;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.61;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4604,484,0 chrIV 145686 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=185;Dels=0.00;FS=5.707;HaplotypeScore=3.6403;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=-1.552;QD=19.97;ReadPosRankSum=2.820;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:3,181:185:99:3695,382,0 chrIV 145687 . T G 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.1182;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.522;QD=20.91;ReadPosRankSum=2.327;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3806,391,0 chrIV 145769 . T C 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.226;DP=138;Dels=0.00;FS=4.876;HaplotypeScore=9.0844;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.702;QD=24.32;ReadPosRankSum=3.265;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:4,132:138:99:3356,343,0 chrIV 145805 . T A 4287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.1018;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.642;QD=26.46;ReadPosRankSum=1.219;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4287,424,0 chrIV 146231 . T A 7104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=294;Dels=0.00;FS=4.270;HaplotypeScore=14.6120;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.060;QD=24.16;ReadPosRankSum=1.708;SB=-3.161e+03 GT:AD:DP:GQ:PL 1/1:1,293:294:99:7104,706,0 chrIV 146252 . A G 5970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=4.1280;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=1.406;QD=22.44;ReadPosRankSum=1.719;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:1,265:266:99:5970,622,0 chrIV 146627 . A G 5157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=208;Dels=0.00;FS=3.008;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.845;QD=24.79;ReadPosRankSum=2.414;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:2,205:208:99:5157,532,0 chrIV 146675 . A C 5168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=228;Dels=0.00;FS=9.206;HaplotypeScore=22.6027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.836;QD=22.67;ReadPosRankSum=2.933;SB=-2.995e+03 GT:AD:DP:GQ:PL 1/1:3,223:228:99:5168,523,0 chrIV 147092 . A T 5512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-1.451;QD=24.72;ReadPosRankSum=1.685;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:5512,565,0 chrIV 147362 . C T 4865.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=23.50;SB=-2.961e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4865,478,0 chrIV 147374 . A G 4548.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=21.87;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4548,457,0 chrIV 147377 . T C 4560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.605;DP=216;Dels=0.00;FS=11.241;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=-1.549;QD=21.11;ReadPosRankSum=3.765;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:5,211:216:99:4560,460,0 chrIV 147431 . A G 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=4.534;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.530;QD=21.67;ReadPosRankSum=1.714;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4248,442,0 chrIV 147591 . G A 5597.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=15.8243;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=24.77;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5597,571,0 chrIV 147846 . T G 3852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=179;Dels=0.00;FS=9.180;HaplotypeScore=15.1121;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-0.994;QD=21.52;ReadPosRankSum=2.881;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:3,174:179:99:3852,388,0 chrIV 148010 . T G 7118.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=302;Dels=0.01;FS=9.076;HaplotypeScore=28.6009;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.663;QD=23.57;ReadPosRankSum=3.374;SB=-3.996e+03 GT:AD:DP:GQ:PL 1/1:4,294:300:99:7118,727,0 chrIV 148638 . A G 6529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.721;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.552;QD=20.73;ReadPosRankSum=1.721;SB=-3.644e+03 GT:AD:DP:GQ:PL 1/1:1,314:315:99:6529,679,0 chrIV 148986 . T C 2034 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=20.97;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,94:97:99:2067,210,0 chrIV 149311 . A T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=28.00;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3444,343,0 chrIV 149500 . A G 6765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=288;Dels=0.00;FS=6.097;HaplotypeScore=18.3244;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-1.394;QD=23.49;ReadPosRankSum=2.364;SB=-3.921e+03 GT:AD:DP:GQ:PL 1/1:2,285:288:99:6765,697,0 chrIV 149678 . C T 8206.01 filter AC=2;AF=1.00;AN=2;DP=371;Dels=0.00;FS=0.000;HaplotypeScore=17.0381;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.12;SB=-4.083e+03 GT:AD:DP:GQ:PL 1/1:0,369:371:99:8206,806,0 chrIV 149689 . T C 7637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=354;Dels=0.00;FS=2.772;HaplotypeScore=15.0954;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.793;QD=21.57;ReadPosRankSum=2.408;SB=-3.933e+03 GT:AD:DP:GQ:PL 1/1:2,352:354:99:7637,769,0 chrIV 150223 . A G 8105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=14.8573;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.041;QD=23.77;ReadPosRankSum=1.712;SB=-4.591e+03 GT:AD:DP:GQ:PL 1/1:1,339:341:99:8105,841,0 chrIV 150307 . A G 7904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.047;DP=343;Dels=0.00;FS=4.657;HaplotypeScore=16.5216;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.365;QD=23.04;ReadPosRankSum=4.172;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:6,336:343:99:7904,814,0 chrIV 150382 . G C 6223.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=21.7383;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,259:261:99:6223,643,0 chrIV 150486 . G A 5624.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.3571;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.00;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5624,553,0 chrIV 150567 . A G 5913.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.3562;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.82;SB=-2.947e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5913,601,0 chrIV 150634 . G A 4917.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.0948;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.59;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4917,490,0 chrIV 150745 . C T 5525.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.2495;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.89;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5525,541,0 chrIV 150784 . A G 5109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.9515;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.258;QD=24.10;ReadPosRankSum=1.716;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:5109,532,0 chrIV 150838 . T C 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=187;Dels=0.00;FS=3.401;HaplotypeScore=11.7319;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.192;QD=21.67;ReadPosRankSum=1.713;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4052,415,0 chrIV 151009 . T C 4518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=188;Dels=0.00;FS=5.822;HaplotypeScore=14.4238;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.156;QD=24.03;ReadPosRankSum=2.930;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:3,184:188:99:4518,460,0 chrIV 151696 . A G 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.8525;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.432;QD=22.25;ReadPosRankSum=1.713;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4160,430,0 chrIV 151765 . G A 4142.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.4950;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4142,418,0 chrIV 152053 . A G 4909.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4909,505,0 chrIV 152269 . C T 4181.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4181,415,0 chrIV 152920 . T A 5574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=216;Dels=0.00;FS=3.281;HaplotypeScore=14.8890;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.524;QD=25.81;ReadPosRankSum=1.635;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:5574,571,0 chrIV 153229 . T A 4582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.0987;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-0.794;QD=23.74;ReadPosRankSum=1.642;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4582,463,0 chrIV 153267 . G A 4938.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=25.85;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4938,487,0 chrIV 153283 . T C 4824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.6906;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=1.259;QD=23.42;ReadPosRankSum=1.698;SB=-2.894e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4824,490,0 chrIV 153397 . A G 5719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=243;Dels=0.00;FS=6.986;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-0.955;QD=23.54;ReadPosRankSum=2.419;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:2,241:243:99:5719,583,0 chrIV 153415 . T C 5081.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=23.63;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5081,523,0 chrIV 153457 . T C 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=170;Dels=0.00;FS=3.594;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.114;QD=21.11;ReadPosRankSum=1.691;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3589,370,0 chrIV 153559 . T C 6081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=252;Dels=0.00;FS=7.985;HaplotypeScore=14.1320;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.340;QD=24.13;ReadPosRankSum=2.391;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:2,249:252:99:6081,634,0 chrIV 153605 . T C 5167.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.0812;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=24.14;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:5167,529,0 chrIV 153625 . G A 4802.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=24.25;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4802,475,0 chrIV 153691 . G A 4417.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.6659;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=24.95;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4417,427,0 chrIV 153712 . G A 4499.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.72;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4499,466,0 chrIV 153856 . G A 5538.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.2816;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=26.37;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:5538,571,0 chrIV 154012 . C G 3503.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.25;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3503,361,0 chrIV 154372 . G A 7158.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=27.74;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:7158,700,0 chrIV 154680 . C T 6656.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=10.4726;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.60;SB=-3.952e+03 GT:AD:DP:GQ:PL 1/1:0,282:282:99:6656,661,0 chrIV 154696 . A C 6432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=283;Dels=0.00;FS=6.514;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.786;QD=22.73;ReadPosRankSum=2.432;SB=-3.576e+03 GT:AD:DP:GQ:PL 1/1:2,279:283:99:6432,667,0 chrIV 155368 . C A 4230.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.18;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4230,447,0 chrIV 155446 . T A 5061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=228;Dels=0.00;FS=3.146;HaplotypeScore=5.0309;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-0.786;QD=22.20;ReadPosRankSum=1.717;SB=-3.299e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:5061,505,0 chrIV 155447 . T C 5088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=229;Dels=0.00;FS=3.165;HaplotypeScore=5.8196;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=1.094;QD=22.22;ReadPosRankSum=1.702;SB=-3.190e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5088,511,0 chrIV 155661 . T C 3603.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.51;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3603,367,0 chrIV 155900 . G A 1827 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=25.37;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1860,192,0 chrIV 156110 . A T 4113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=6.077;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-1.035;QD=26.71;ReadPosRankSum=1.710;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:4113,409,0 chrIV 156137 . C A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=24.47;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3572,352,0 chrIV 156155 . T C 3035 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.48;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3068,307,0 chrIV 156313 . G A 4791.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.92;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4791,499,0 chrIV 156362 . T C 3312.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=17.4921;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.32;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3312,340,0 chrIV 156465 . T C 3866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=151;Dels=0.00;FS=5.779;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.188;QD=25.60;ReadPosRankSum=2.953;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:3866,391,0 chrIV 156591 . G A 4681.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.3556;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.77;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4681,481,0 chrIV 156943 . A G 4687.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.1769;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4687,475,0 chrIV 157038 . A G 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.220;DP=169;Dels=0.00;FS=8.090;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.036;QD=24.71;ReadPosRankSum=3.334;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:4,164:169:99:4176,430,0 chrIV 157244 . C T 4350.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.69;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4350,433,0 chrIV 157424 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3431,355,0 chrIV 157853 . T A 2768 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=25.87;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2801,280,0 chrIV 157918 . T C 1137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=5.133;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-1.686;QD=15.16;ReadPosRankSum=1.640;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1170,117,0 chrIV 157927 . G A 1011 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=14.44;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,64:70:99:1044,108,0 chrIV 158013 . C A 1700 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.99;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1733,168,0 chrIV 158023 . C G 1617 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.25;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1650,171,0 chrIV 158032 . G A 1409 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=17.84;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1442,150,0 chrIV 158137 . G A 3590.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=28.05;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3590,352,0 chrIV 158296 . T C 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.8759;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=0.245;QD=21.62;ReadPosRankSum=1.615;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3849,391,0 chrIV 158426 . C T 5060.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.10;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5060,523,0 chrIV 158474 . T C 4070.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.1942;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.53;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4070,412,0 chrIV 158505 . T A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.8997;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=21.36;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3653,358,0 chrIV 158510 . T C 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=179;Dels=0.00;FS=6.095;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=-1.881;QD=19.55;ReadPosRankSum=2.422;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:2,175:179:99:3500,355,0 chrIV 158749 . C T 6569.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=13.1981;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=26.70;SB=-2.837e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:6569,652,0 chrIV 158929 . T C 4935.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.2787;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.39;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4935,523,0 chrIV 158981 . A C 4964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=193;Dels=0.00;FS=5.527;HaplotypeScore=10.7743;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.766;QD=25.72;ReadPosRankSum=2.922;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:4964,508,0 chrIV 159017 . A G 3992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.707;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.5521;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.635;QD=23.48;ReadPosRankSum=0.970;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:3992,406,0 chrIV 159085 . A C 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.172;QD=23.98;ReadPosRankSum=1.679;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3175,322,0 chrIV 159133 . C T 3084 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.67;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3117,310,0 chrIV 159190 . A G 2710 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.21;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2743,285,0 chrIV 159318 . T C 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=2.619;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-1.854;QD=22.92;ReadPosRankSum=2.412;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3058,310,0 chrIV 159320 . G C 3051 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=22.43;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3084,310,0 chrIV 159428 . T C 2954 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2987,301,0 chrIV 159505 . T C 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=155;Dels=0.00;FS=3.038;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=0.753;QD=25.60;ReadPosRankSum=2.386;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3968,406,0 chrIV 159602 . C G 4513.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=19.8105;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.53;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4513,466,0 chrIV 159777 . C T 6956.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.67;SB=-3.240e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:6956,685,0 chrIV 159954 . T C 7001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=272;Dels=0.00;FS=3.761;HaplotypeScore=8.9241;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=0.415;QD=25.74;ReadPosRankSum=0.620;SB=-3.236e+03 GT:AD:DP:GQ:PL 1/1:1,271:272:99:7001,718,0 chrIV 160071 . G A 6146.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=24.88;SB=-2.880e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:6146,640,0 chrIV 160218 . C T 4129.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.15;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4129,412,0 chrIV 160520 . G A 3556.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3556,355,0 chrIV 160615 . G A 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.185;DP=171;Dels=0.00;FS=4.005;HaplotypeScore=14.8531;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.692;QD=24.71;ReadPosRankSum=1.165;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4226,401,0 chrIV 160731 . A G 1732 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.62;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1765,183,0 chrIV 160842 . A G 1861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.732;QD=22.70;ReadPosRankSum=1.690;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1894,198,0 chrIV 161006 . T C 2954 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=24.62;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2987,301,0 chrIV 161007 . T C 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.472;QD=24.29;ReadPosRankSum=1.703;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2972,303,0 chrIV 161194 . T C 6320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.426;DP=249;Dels=0.00;FS=5.228;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-0.871;QD=25.38;ReadPosRankSum=3.363;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:4,245:249:99:6320,637,0 chrIV 161220 . A G 5639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=246;Dels=0.00;FS=13.570;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-0.331;QD=22.92;ReadPosRankSum=3.368;SB=-3.237e+03 GT:AD:DP:GQ:PL 1/1:4,241:246:99:5639,580,0 chrIV 161421 . C T 3086 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.37;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3119,327,0 chrIV 162498 . C A 3802.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.61;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3802,376,0 chrIV 163327 . C A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3238,336,0 chrIV 164013 . G A 2850 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.27;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2883,297,0 chrIV 164045 . T C 2493 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.2938;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.13;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2526,255,0 chrIV 164089 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=23.38;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2932,295,0 chrIV 164126 . T C 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=127;Dels=0.00;FS=3.522;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=0.220;QD=21.06;ReadPosRankSum=1.705;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2708,282,0 chrIV 164135 . G C 2696 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=22.28;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2729,276,0 chrIV 164161 . A T 1040 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=8.81;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1073,132,0 chrIV 164162 . T A 1036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=3.668;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.673;QD=8.56;ReadPosRankSum=1.646;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1069,132,0 chrIV 164202 . C T 2353 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.11;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2386,246,0 chrIV 164238 . C T 2828 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=23.76;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2861,289,0 chrIV 164256 . G A 3071 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=24.97;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3104,301,0 chrIV 164281 . C G 3174 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.34;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3207,331,0 chrIV 164439 . C T 3881.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=16.2679;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=24.41;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3881,394,0 chrIV 164580 . C T 4839.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4839,484,0 chrIV 164987 . C T 1995 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=14.0181;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.47;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2028,204,0 chrIV 165265 . A G 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.8677;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.247;QD=23.95;ReadPosRankSum=1.274;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4527,454,0 chrIV 165386 . T C 4451.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4451,451,0 chrIV 165509 . T C 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.489;QD=23.50;ReadPosRankSum=1.688;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3689,376,0 chrIV 166100 . T C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=3.134;HaplotypeScore=7.2449;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.000;QD=22.48;ReadPosRankSum=1.708;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3248,334,0 chrIV 166418 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=165;Dels=0.00;FS=5.824;HaplotypeScore=5.5203;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-1.080;QD=21.57;ReadPosRankSum=2.933;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3559,367,0 chrIV 166427 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.80;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3453,357,0 chrIV 166604 . G A 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DP=145;Dels=0.00;FS=3.522;HaplotypeScore=12.3914;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.443;QD=21.80;ReadPosRankSum=1.708;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3194,309,0 chrIV 166634 . T C 4062.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.48;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4062,418,0 chrIV 167295 . C T 5714.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=15.9482;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5714,568,0 chrIV 167687 . G A 6141.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=27.66;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:6141,598,0 chrIV 168796 . A G 5224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.522;DP=249;Dels=0.00;FS=9.065;HaplotypeScore=15.3732;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.210;QD=20.98;ReadPosRankSum=2.882;SB=-3.246e+03 GT:AD:DP:GQ:PL 1/1:4,243:249:99:5224,535,0 chrIV 170327 . T C 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.186;DP=129;Dels=0.00;FS=5.289;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-2.656;QD=25.48;ReadPosRankSum=3.336;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:4,125:129:99:3287,337,0 chrIV 170349 . G A 2961 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=20.42;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2994,306,0 chrIV 170354 . T C 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=145;Dels=0.00;FS=2.509;HaplotypeScore=113.9144;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=-1.257;QD=20.61;ReadPosRankSum=2.896;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3021,306,0 chrIV 170455 . T C 7513.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=13.3664;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.32;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,275:275:99:7513,766,0 chrIV 170722 . G A 5892.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=23.5672;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.49;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:5892,604,0 chrIV 170914 . G A 3603.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.10;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3603,358,0 chrIV 170953 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.9435;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.57;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3499,352,0 chrIV 171279 . G A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.90;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3776,373,0 chrIV 171294 . A G 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=142;Dels=0.00;FS=3.903;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.247;QD=22.61;ReadPosRankSum=1.683;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3243,328,0 chrIV 171817 . A G 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.561;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.6314;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.707;QD=23.60;ReadPosRankSum=1.607;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3280,348,0 chrIV 172805 . T A 6246.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.6185;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.13;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6246,616,0 chrIV 172927 . A G 5807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.133;DP=274;Dels=0.00;FS=10.601;HaplotypeScore=8.1130;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.536;QD=21.19;ReadPosRankSum=4.107;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:6,268:274:99:5807,607,0 chrIV 173380 . C T 3584.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=28.00;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3584,352,0 chrIV 173416 . T C 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=118;Dels=0.00;FS=2.785;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.356;QD=24.88;ReadPosRankSum=2.303;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2969,306,0 chrIV 173461 . C A 2583 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.86;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2616,273,0 chrIV 174089 . G A 707 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=18.9994;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.09;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:75:740,75,0 chrIV 174831 . C T 3170 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.02;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3203,313,0 chrIV 174887 . C T 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.808;DP=120;Dels=0.00;FS=3.802;HaplotypeScore=1.9623;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=1.386;QD=26.06;ReadPosRankSum=1.530;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3160,295,0 chrIV 174905 . T C 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.1505;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-1.595;QD=23.69;ReadPosRankSum=1.705;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3042,307,0 chrIV 174995 . T C 2031 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=13.63;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2064,254,0 chrIV 174996 . T C 1604 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=0.554;QD=10.91;ReadPosRankSum=1.709;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:1637,203,0 chrIV 174998 . G T 1603 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=10.69;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:1636,203,0 chrIV 175307 . C G 3569.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.5928;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=25.68;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3569,364,0 chrIV 175412 . G T 3198 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.21;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3231,325,0 chrIV 175650 . G A 4961.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.0614;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4961,502,0 chrIV 175847 . A G 4938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.2081;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.892;QD=24.94;ReadPosRankSum=1.715;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4938,511,0 chrIV 175946 . C T 5431.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.80;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5431,556,0 chrIV 176019 . A G 5855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=247;Dels=0.00;FS=4.665;HaplotypeScore=17.2310;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.390;QD=23.70;ReadPosRankSum=1.718;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:1,243:247:99:5855,613,0 chrIV 176064 . A G 7038.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=22.4987;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.88;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:7038,709,0 chrIV 176423 . T C 5169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=235;Dels=0.00;FS=5.712;HaplotypeScore=19.5513;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.237;QD=22.00;ReadPosRankSum=1.717;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,230:235:99:5169,535,0 chrIV 176519 . T C 5052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.277;DP=213;Dels=0.00;FS=5.650;HaplotypeScore=7.7589;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.366;QD=23.72;ReadPosRankSum=-0.398;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:5052,482,0 chrIV 176628 . C T 2486 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.86;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2519,255,0 chrIV 177160 . T C 5266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=232;Dels=0.00;FS=4.017;HaplotypeScore=18.8007;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.329;QD=22.70;ReadPosRankSum=1.717;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5266,532,0 chrIV 177207 . A G 6001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=7.1578;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.449;QD=23.91;ReadPosRankSum=1.663;SB=-2.970e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:6001,616,0 chrIV 177330 . C T 4106.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.5510;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.82;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4106,409,0 chrIV 177363 . A G 4466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.5945;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.648;QD=24.67;ReadPosRankSum=1.713;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:4466,451,0 chrIV 177756 . C T 3943.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.47;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3943,400,0 chrIV 177780 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=3.066;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=1.162;QD=22.23;ReadPosRankSum=1.644;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3535,361,0 chrIV 177807 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.69;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4038,406,0 chrIV 178032 . A G 4171.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=25.28;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4171,418,0 chrIV 178058 . A T 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=153;Dels=0.00;FS=2.839;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.538;QD=22.58;ReadPosRankSum=2.401;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3454,360,0 chrIV 178389 . G A 5558.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=16.9108;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.85;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5558,553,0 chrIV 178453 . T G 4460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=3.576;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.231;QD=24.64;ReadPosRankSum=1.713;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4460,460,0 chrIV 178489 . C G 4241.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:4241,442,0 chrIV 178580 . A C 5934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=241;Dels=0.00;FS=6.076;HaplotypeScore=13.5955;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.409;QD=24.62;ReadPosRankSum=2.429;SB=-3.266e+03 GT:AD:DP:GQ:PL 1/1:2,235:241:99:5934,604,0 chrIV 178930 . G A 5598.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.6441;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.62;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:0,234:237:99:5598,583,0 chrIV 178974 . A G 5101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=210;Dels=0.00;FS=2.866;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.592;QD=24.29;ReadPosRankSum=2.403;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:5101,514,0 chrIV 179020 . T C 5516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=227;Dels=0.00;FS=3.635;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.217;QD=24.30;ReadPosRankSum=1.717;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:1,223:227:99:5516,574,0 chrIV 179105 . C A 4387.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.09;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4387,439,0 chrIV 179134 . C T 4188.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.66;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4188,412,0 chrIV 179240 . T C 4164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=3.358;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.221;QD=26.52;ReadPosRankSum=1.688;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:4164,421,0 chrIV 179328 . G C 2935 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.87;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2968,298,0 chrIV 179480 . G A 3697.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=23.85;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3697,367,0 chrIV 179487 . C G 3351.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.90;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3351,340,0 chrIV 179632 . C T 3006 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=22.95;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3039,307,0 chrIV 179651 . A G 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=140;Dels=0.00;FS=2.983;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-0.383;QD=19.84;ReadPosRankSum=2.343;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:2811,297,0 chrIV 179674 . G T 3302.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=20.51;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3302,328,0 chrIV 179696 . A C 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=179;Dels=0.00;FS=2.962;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=-0.035;QD=19.50;ReadPosRankSum=2.422;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:2,175:179:99:3491,352,0 chrIV 179714 . A C 3633.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.9692;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=19.32;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3633,373,0 chrIV 179755 . G A 3319.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.84;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3319,325,0 chrIV 179890 . A G 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.6920;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=0.175;QD=25.06;ReadPosRankSum=1.678;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,128:132:99:3308,337,0 chrIV 180086 . G A 4220.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.89;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4220,433,0 chrIV 180121 . G A 3714.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3714,387,0 chrIV 180382 . A G 3932.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.73;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3932,412,0 chrIV 180628 . A G 5898.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=5.4644;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=24.78;SB=-3.310e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5898,601,0 chrIV 180644 . A C 5422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.950;QD=23.57;ReadPosRankSum=1.717;SB=-3.049e+03 GT:AD:DP:GQ:PL 1/1:1,225:230:99:5422,556,0 chrIV 181978 . T G 4231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.9403;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=0.833;QD=19.96;ReadPosRankSum=1.552;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4231,433,0 chrIV 181988 . C T 4568.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=2.7570;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.39;SB=-2.939e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4568,448,0 chrIV 182019 . G C 4589.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.2667;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.58;SB=-3.021e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4589,466,0 chrIV 182498 . A G 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=128;Dels=0.00;FS=6.041;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.293;QD=25.21;ReadPosRankSum=2.927;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:3,123:128:99:3260,325,0 chrIV 182600 . G C 4235.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.4847;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4235,433,0 chrIV 182859 . G A 4761.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.0426;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=23.57;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4761,463,0 chrIV 183011 . C T 4088.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.8087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4088,406,0 chrIV 183645 . C T 5542.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.31;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5542,562,0 chrIV 183726 . G A 7256.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=8.0478;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=25.19;SB=-3.182e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:7256,751,0 chrIV 183756 . T C 6396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-0.194;QD=21.68;ReadPosRankSum=1.673;SB=-3.257e+03 GT:AD:DP:GQ:PL 1/1:1,294:295:99:6396,658,0 chrIV 183759 . G T 6424.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=3.5539;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=21.85;SB=-3.392e+03 GT:AD:DP:GQ:PL 1/1:0,294:294:99:6424,655,0 chrIV 183912 . A G 5872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=265;Dels=0.00;FS=4.866;HaplotypeScore=24.7586;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.970;QD=22.16;ReadPosRankSum=3.244;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:4,261:265:99:5872,598,0 chrIV 183975 . C T 6143.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=26.4265;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=24.19;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,251:254:99:6143,622,0 chrIV 184169 . C T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.35;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3794,379,0 chrIV 184221 . A G 3859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=153;Dels=0.00;FS=3.001;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.238;QD=25.22;ReadPosRankSum=2.417;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:2,148:153:99:3859,391,0 chrIV 184320 . A G 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=3.315;HaplotypeScore=15.0939;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.925;QD=24.59;ReadPosRankSum=1.706;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3271,328,0 chrIV 184697 . A T 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=164;Dels=0.00;FS=7.184;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-1.581;QD=22.38;ReadPosRankSum=2.390;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3671,361,0 chrIV 184893 . C T 4549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.6117;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-0.513;QD=25.41;ReadPosRankSum=1.713;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4549,432,0 chrIV 185023 . T C 5647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.055;QD=25.55;ReadPosRankSum=1.716;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:5647,586,0 chrIV 185188 . G A 5609.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.2327;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=25.73;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5609,550,0 chrIV 185256 . C T 5123.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=25.36;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:5123,517,0 chrIV 185449 . T C 3701.01 SnpCluster AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.3341;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=21.03;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3701,384,0 chrIV 185452 . G A 3685.01 SnpCluster AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.5120;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=21.18;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3685,364,0 chrIV 185458 . C G 3215 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;MQRankSum=1.498;QD=19.37;ReadPosRankSum=0.818;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,162:166:99:3248,333,0 chrIV 185528 . G A 3724.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=21.65;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3724,390,0 chrIV 185548 . T C 3894.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=22.51;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3894,394,0 chrIV 185567 . C T 3860.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=20.86;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3860,397,0 chrIV 185597 . C T 3517.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.6051;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.21;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3517,357,0 chrIV 185668 . C T 4581.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=25.59;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4581,469,0 chrIV 185683 . T C 4155.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=23.34;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4155,429,0 chrIV 185704 . A G 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=164;Dels=0.00;FS=5.259;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;MQRankSum=1.105;QD=20.68;ReadPosRankSum=2.932;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:3,160:164:99:3391,348,0 chrIV 185746 . C T 3026 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0092;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=20.17;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3059,309,0 chrIV 185756 . A T 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;MQRankSum=1.220;QD=20.05;ReadPosRankSum=1.708;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2880,306,0 chrIV 185783 . T C 2882 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=22.17;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2915,291,0 chrIV 186841 . C T 3602.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.9030;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.10;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3602,370,0 chrIV 187060 . C T 4225.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=15.9583;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.76;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4225,433,0 chrIV 187198 . G T 4601.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=23.96;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4601,460,0 chrIV 187216 . C T 3950.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.24;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3950,391,0 chrIV 187293 . A G 4263.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.08;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4263,430,0 chrIV 187696 . G T 5902.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=27.07;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5902,595,0 chrIV 187789 . C T 4075.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.47;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4075,403,0 chrIV 188103 . C G 1927 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1960,204,0 chrIV 188150 . T C 2061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=90;Dels=0.00;FS=2.539;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.584;QD=22.90;ReadPosRankSum=2.810;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:3,87:90:99:2094,213,0 chrIV 188469 . T C 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=189;Dels=0.00;FS=4.206;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.157;QD=24.23;ReadPosRankSum=1.714;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4580,460,0 chrIV 189459 . A G 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.141;DP=139;Dels=0.00;FS=13.572;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.133;QD=22.66;ReadPosRankSum=3.369;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:4,134:139:99:3183,319,0 chrIV 189502 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3266,325,0 chrIV 189732 . G A 4514.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4514,445,0 chrIV 190140 . G A 4596.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.2391;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.31;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4596,475,0 chrIV 190212 . C A 5846.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.4624;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.42;SB=-3.066e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5846,589,0 chrIV 190497 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.0136;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.77;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2583,256,0 chrIV 190604 . T G 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=121;Dels=0.00;FS=3.010;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.128;QD=23.23;ReadPosRankSum=2.267;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2844,294,0 chrIV 190810 . C T 3915.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.62;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3915,397,0 chrIV 190888 . C G 4403.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.8491;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.05;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4403,445,0 chrIV 191044 . G C 3768.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.1183;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.55;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3768,382,0 chrIV 191112 . A G 3876.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.38;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3876,394,0 chrIV 191355 . G A 2215 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.89;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2248,234,0 chrIV 192247 . T C 3473.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.99;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3473,360,0 chrIV 192278 . G C 3331.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.43;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3331,337,0 chrIV 192319 . T C 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=4.260;HaplotypeScore=9.1303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.087;QD=21.95;ReadPosRankSum=1.646;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2667,276,0 chrIV 192451 . G A 2338 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.62;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2371,246,0 chrIV 192839 . C T 2608 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=26.61;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2641,264,0 chrIV 193043 . A G 4458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=181;Dels=0.00;FS=14.911;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.682;QD=24.63;ReadPosRankSum=2.905;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:3,177:181:99:4458,460,0 chrIV 193103 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;QD=19.56;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3260,325,0 chrIV 193107 . T C 2967 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=17.87;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3000,306,0 chrIV 193118 . A G 3004 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=16.60;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3037,309,0 chrIV 193121 . C T 2967 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=16.30;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3000,312,0 chrIV 193154 . T C 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=201;Dels=0.00;FS=2.853;HaplotypeScore=4.7152;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;MQRankSum=-0.495;QD=19.18;ReadPosRankSum=2.425;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:3855,397,0 chrIV 193178 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=19.69;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3742,367,0 chrIV 193214 . T A 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=214;Dels=0.00;FS=3.619;HaplotypeScore=3.4505;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;MQRankSum=-0.664;QD=21.64;ReadPosRankSum=1.700;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4631,463,0 chrIV 193229 . C T 4441.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=18.98;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4441,463,0 chrIV 193242 . T C 4169.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=19.21;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4169,421,0 chrIV 193254 . A G 4566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=235;Dels=0.00;FS=2.840;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;MQRankSum=-0.385;QD=19.43;ReadPosRankSum=2.418;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:2,231:235:99:4566,469,0 chrIV 193364 . G A 5525.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=18.2428;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=24.67;SB=-3.030e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5525,538,0 chrIV 193567 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=20.29;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3308,328,0 chrIV 193568 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=20.19;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3331,328,0 chrIV 193583 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=20.82;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3560,358,0 chrIV 193595 . A G 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=182;Dels=0.00;FS=2.619;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=1.880;QD=19.76;ReadPosRankSum=2.355;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:3597,370,0 chrIV 193723 . G A 3513.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.6007;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.40;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3513,346,0 chrIV 194241 . T C 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.2774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.837;QD=22.65;ReadPosRankSum=1.703;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2774,282,0 chrIV 194317 . A G 321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=132;Dels=0.02;FS=3.032;HaplotypeScore=122.2347;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=1.427;QD=2.43;ReadPosRankSum=2.371;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,123:130:39:354,39,0 chrIV 195095 . C T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.35;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4141,424,0 chrIV 195098 . C T 4097.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.69;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4097,424,0 chrIV 195160 . G A 4624.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=21.2397;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.11;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:0,214:219:99:4624,478,0 chrIV 195463 . A G 5718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=253;Dels=0.00;FS=5.838;HaplotypeScore=12.5777;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.390;QD=22.60;ReadPosRankSum=2.885;SB=-3.120e+03 GT:AD:DP:GQ:PL 1/1:3,249:253:99:5718,580,0 chrIV 195920 . A G 4902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=219;Dels=0.00;FS=2.864;HaplotypeScore=15.2355;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.342;QD=22.38;ReadPosRankSum=2.416;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:4902,496,0 chrIV 196014 . A G 5600.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5600,571,0 chrIV 196443 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.9279;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2838,277,0 chrIV 196790 . C A 5008.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=24.19;SB=-2.937e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:5008,496,0 chrIV 196806 . T C 4888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=213;Dels=0.00;FS=3.351;HaplotypeScore=7.6056;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.833;QD=22.95;ReadPosRankSum=1.699;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:4888,508,0 chrIV 196851 . A G 6522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=274;Dels=0.00;FS=6.011;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-1.151;QD=23.80;ReadPosRankSum=2.945;SB=-3.672e+03 GT:AD:DP:GQ:PL 1/1:3,270:274:99:6522,646,0 chrIV 197574 . G A 3953.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.6493;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.81;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3953,415,0 chrIV 198420 . A G 4157.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.4300;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.17;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:4157,441,0 chrIV 198659 . G A 5884.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=10.9963;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.25;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5884,577,0 chrIV 198797 . G A 5752.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.2628;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.37;SB=-2.980e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5752,580,0 chrIV 198950 . A T 7302.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=5.6173;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=22.54;SB=-3.050e+03 GT:AD:DP:GQ:PL 1/1:0,324:324:99:7302,736,0 chrIV 198959 . G T 6797.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=7.1805;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.72;SB=-3.137e+03 GT:AD:DP:GQ:PL 1/1:0,327:328:99:6797,709,0 chrIV 199259 . G A 7650.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=23.4046;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.98;SB=-3.576e+03 GT:AD:DP:GQ:PL 1/1:0,315:319:99:7650,781,0 chrIV 199393 . G A 6986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=15.7007;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=-1.686;QD=22.90;ReadPosRankSum=1.709;SB=-3.336e+03 GT:AD:DP:GQ:PL 1/1:1,302:305:99:6986,691,0 chrIV 199794 . T C 6016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=253;Dels=0.00;FS=10.566;HaplotypeScore=19.4034;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.075;QD=23.78;ReadPosRankSum=2.933;SB=-3.131e+03 GT:AD:DP:GQ:PL 1/1:3,250:253:99:6016,610,0 chrIV 199937 . A G 6470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.242;DP=274;Dels=0.00;FS=14.210;HaplotypeScore=21.2215;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.635;QD=23.61;ReadPosRankSum=3.351;SB=-3.244e+03 GT:AD:DP:GQ:PL 1/1:4,266:274:99:6470,667,0 chrIV 200220 . C T 5570.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=14.2131;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.01;SB=-3.158e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:5570,574,0 chrIV 200337 . C T 5127.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=15.9182;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.89;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,219:224:99:5127,544,0 chrIV 200994 . T C 4903.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=25.27;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4903,511,0 chrIV 201393 . C T 6329.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.63;SB=-3.139e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:6329,658,0 chrIV 202117 . T C 5032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=208;Dels=0.00;FS=3.358;HaplotypeScore=4.7964;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.966;QD=24.19;ReadPosRankSum=1.699;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:5032,514,0 chrIV 202127 . G A 4913.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.40;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4913,490,0 chrIV 202229 . T G 4497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.266;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.9638;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.467;QD=23.67;ReadPosRankSum=-1.365;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4497,477,0 chrIV 202448 . A G 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.068;QD=24.05;ReadPosRankSum=1.687;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,151:155:99:3728,373,0 chrIV 202579 . T G 3819.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.72;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3819,388,0 chrIV 202591 . A G 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-1.374;QD=20.68;ReadPosRankSum=1.687;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3238,345,0 chrIV 202790 . A T 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-1.033;QD=22.29;ReadPosRankSum=1.674;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2685,273,0 chrIV 202902 . C T 241.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=99.5991;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=1.80;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:27:274,27,0 chrIV 203446 . G A 4533.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.77;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4533,442,0 chrIV 203647 . G T 4477.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.7819;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.60;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4477,448,0 chrIV 203795 . G A 4504.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.19;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4504,445,0 chrIV 204077 . G A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.4473;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=25.95;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4489,439,0 chrIV 204271 . T C 4747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.4520;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=1.208;QD=26.67;ReadPosRankSum=1.773;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4747,456,0 chrIV 204319 . T C 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=166;Dels=0.00;FS=2.595;HaplotypeScore=2.7711;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=0.659;QD=22.03;ReadPosRankSum=1.384;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3657,357,0 chrIV 204322 . C T 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.198;DP=159;Dels=0.00;FS=2.639;HaplotypeScore=3.7605;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-0.224;QD=21.50;ReadPosRankSum=-0.410;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3418,301,0 chrIV 204349 . C T 2639 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=17.83;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2672,265,0 chrIV 204361 . C T 2680 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=18.61;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2713,273,0 chrIV 204469 . T C 4721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=207;Dels=0.00;FS=4.108;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.959;QD=22.81;ReadPosRankSum=1.715;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4721,481,0 chrIV 204557 . A C 4677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=16.1190;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=0.398;QD=24.75;ReadPosRankSum=1.695;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4677,481,0 chrIV 204805 . G A 5088.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.50;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:5088,493,0 chrIV 205310 . A G 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=132;Dels=0.00;FS=3.702;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.738;QD=24.26;ReadPosRankSum=1.705;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,128:132:99:3235,333,0 chrIV 205528 . T C 8703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.593;DP=345;Dels=0.00;FS=6.837;HaplotypeScore=29.9357;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=1.085;QD=25.23;ReadPosRankSum=4.826;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:8,337:345:99:8703,910,0 chrIV 205765 . C T 9359.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.811;DP=488;Dels=0.00;FS=8.474;HaplotypeScore=20.4331;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=1.686;QD=19.18;ReadPosRankSum=-0.114;SB=-4.934e+03 GT:AD:DP:GQ:PL 1/1:2,481:488:99:9359,970,0 chrIV 205771 . T C 9412.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.907;DP=501;Dels=0.00;FS=42.265;HaplotypeScore=23.0932;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.461;QD=18.79;ReadPosRankSum=4.638;SB=-5.090e+03 GT:AD:DP:GQ:PL 1/1:10,488:501:99:9412,985,0 chrIV 205915 . G A 9914.01 filter AC=2;AF=1.00;AN=2;DP=454;Dels=0.00;FS=0.000;HaplotypeScore=48.1871;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.84;SB=-3.446e+03 GT:AD:DP:GQ:PL 1/1:0,451:454:99:9914,992,0 chrIV 208027 . T C 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=3.336;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.104;QD=24.41;ReadPosRankSum=1.711;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:4076,418,0 chrIV 209791 . T C 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=142;Dels=0.00;FS=6.567;HaplotypeScore=15.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.079;QD=24.20;ReadPosRankSum=2.415;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3437,349,0 chrIV 210091 . A G 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=148;Dels=0.00;FS=7.202;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.093;QD=24.43;ReadPosRankSum=2.349;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3615,364,0 chrIV 210594 . G A 2420 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2453,243,0 chrIV 210686 . A T 266 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=5.0287;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.173;QD=13.30;ReadPosRankSum=-1.387;SB=0.053 GT:AD:DP:GQ:PL 1/1:1,19:20:30:299,30,0 chrIV 210833 . A G 637 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.30;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:69:670,69,0 chrIV 211091 . C T 1361 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=24.75;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1394,147,0 chrIV 211126 . C T 1497 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.39;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1530,165,0 chrIV 211275 . G A 871 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=18.15;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:90:904,90,0 chrIV 211301 . C T 618 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.31;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:66:651,66,0 chrIV 211370 . G A 2038 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.4201;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.85;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2071,204,0 chrIV 211536 . C T 4447.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.63;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4447,451,0 chrIV 211612 . G T 8312.01 PASS AC=2;AF=1.00;AN=2;DP=352;Dels=0.00;FS=0.000;HaplotypeScore=16.8995;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.61;SB=-4.163e+03 GT:AD:DP:GQ:PL 1/1:0,352:352:99:8312,824,0 chrIV 211684 . T C 7251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=308;Dels=0.00;FS=2.961;HaplotypeScore=17.2850;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.555;QD=23.54;ReadPosRankSum=2.402;SB=-3.903e+03 GT:AD:DP:GQ:PL 1/1:2,305:308:99:7251,736,0 chrIV 211831 . A G 6009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=16.9619;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.578;QD=20.65;ReadPosRankSum=2.382;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:2,289:291:99:6009,610,0 chrIV 211876 . G T 5519.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=15.4170;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.56;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5519,556,0 chrIV 211933 . A G 4228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.7013;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.732;QD=21.68;ReadPosRankSum=1.607;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4228,439,0 chrIV 211978 . T C 3468.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.6659;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.67;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3468,355,0 chrIV 212036 . T C 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=14.1285;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=1.591;QD=20.97;ReadPosRankSum=-0.831;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2633,267,0 chrIV 212222 . A G 1276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=45.9035;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;MQRankSum=-0.910;QD=21.63;ReadPosRankSum=1.674;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1309,132,0 chrIV 212251 . A G 1126 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=20.11;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1159,117,0 chrIV 212267 . A G 960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;MQRankSum=-1.144;QD=18.11;ReadPosRankSum=1.471;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:993,102,0 chrIV 212303 . C T 1368 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.43;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1401,138,0 chrIV 212370 . A T 1614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.836;QD=23.74;ReadPosRankSum=2.897;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:3,65:68:99:1647,159,0 chrIV 212428 . T A 376 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=6.6369;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=13.43;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:42:409,42,0 chrIV 212479 . G C 55.97 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=6.22;SB=-2.885e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:88,9,0 chrIV 212482 . T G 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=5.66;SB=-5.791e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:83,9,0 chrIV 212488 . A G 87.51 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=7.96;SB=-5.449e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:120,12,0 chrIV 212616 . T C 457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.069;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=-0.796;QD=11.72;ReadPosRankSum=2.324;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:2,37:39:51:490,51,0 chrIV 212681 . T C 1031 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=1.9951;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=16.90;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1064,111,0 chrIV 212682 . T A 1049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=2.7291;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;MQRankSum=-1.505;QD=16.92;ReadPosRankSum=1.675;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1082,111,0 chrIV 213023 . T A 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=15.9710;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.978;QD=21.48;ReadPosRankSum=1.638;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3212,345,0 chrIV 213112 . A G 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.286;QD=20.95;ReadPosRankSum=1.672;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2463,252,0 chrIV 213530 . C T 4214.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=24.36;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4214,415,0 chrIV 213539 . C T 4124.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=23.17;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4124,415,0 chrIV 213698 . C T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.93;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3970,409,0 chrIV 213950 . A G 5131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=223;Dels=0.00;FS=6.609;HaplotypeScore=12.8038;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.547;QD=23.01;ReadPosRankSum=2.427;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:2,220:223:99:5131,538,0 chrIV 214436 . C T 4098.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.78;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:4098,415,0 chrIV 214658 . C A 4973.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=16.0469;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.57;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4973,520,0 chrIV 214858 . C T 5123.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=18.0954;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.61;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5123,508,0 chrIV 214965 . G A 6856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.395;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=29.6061;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-0.156;QD=23.56;ReadPosRankSum=-0.674;SB=-2.959e+03 GT:AD:DP:GQ:PL 1/1:1,287:291:99:6856,688,0 chrIV 215003 . T C 7059.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=5.1872;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=23.77;SB=-3.636e+03 GT:AD:DP:GQ:PL 1/1:0,296:297:99:7059,712,0 chrIV 215004 . T C 7031.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=5.1872;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=23.75;SB=-3.570e+03 GT:AD:DP:GQ:PL 1/1:0,294:296:99:7031,709,0 chrIV 215138 . C G 5374.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.88;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5374,544,0 chrIV 215266 . G A 4621.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.2056;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=24.98;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4621,451,0 chrIV 215523 . T C 4983.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.55;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4983,502,0 chrIV 215967 . G C 5389.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=5.1427;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=21.64;SB=-3.283e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5389,556,0 chrIV 216140 . A G 6372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.660;DP=274;Dels=0.00;FS=21.525;HaplotypeScore=22.6795;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.189;QD=23.26;ReadPosRankSum=4.815;SB=-3.689e+03 GT:AD:DP:GQ:PL 1/1:8,264:274:99:6372,640,0 chrIV 216293 . G T 4172.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.1349;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=23.31;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4172,421,0 chrIV 216405 . A T 4360.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.8018;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.83;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4360,439,0 chrIV 216465 . A G 4401.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.7797;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=26.67;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4401,445,0 chrIV 217351 . G A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=27.01;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3484,343,0 chrIV 217405 . C T 2768 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.63;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2801,285,0 chrIV 217696 . T C 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=127;Dels=0.00;FS=3.081;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=1.117;QD=23.41;ReadPosRankSum=1.704;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,123:127:99:3006,312,0 chrIV 217732 . A G 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.115;QD=22.97;ReadPosRankSum=1.703;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2789,288,0 chrIV 217745 . A G 2900 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.83;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2933,306,0 chrIV 217775 . T A 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=4.369;HaplotypeScore=4.3523;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.026;QD=23.46;ReadPosRankSum=1.655;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3176,316,0 chrIV 217904 . A G 2486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.495;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-0.775;QD=20.05;ReadPosRankSum=1.619;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2519,285,0 chrIV 217905 . G A 2428 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.58;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2461,279,0 chrIV 217975 . T C 2753 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=22.94;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2786,291,0 chrIV 218065 . T C 4364.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.4341;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=5;MQRankSum=1.108;QD=24.66;ReadPosRankSum=1.712;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:4,173:177:99:4364,445,0 chrIV 218512 . C T 2186 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.7111;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=24.02;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2219,225,0 chrIV 218572 . A T 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=94;Dels=0.00;FS=6.509;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.184;QD=24.03;ReadPosRankSum=1.658;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2292,225,0 chrIV 218669 . T C 4012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=161;Dels=0.00;FS=2.585;HaplotypeScore=10.7362;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.931;QD=24.92;ReadPosRankSum=2.956;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:4012,406,0 chrIV 218767 . A G 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=130;Dels=0.00;FS=6.755;HaplotypeScore=7.3484;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.693;QD=26.12;ReadPosRankSum=2.374;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3395,346,0 chrIV 218923 . T C 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=4.771;HaplotypeScore=10.3194;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.361;QD=21.84;ReadPosRankSum=1.708;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3178,333,0 chrIV 219175 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.5887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.58;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2983,301,0 chrIV 219303 . C G 3591.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.17;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3591,370,0 chrIV 219340 . C A 2885 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.90;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2918,286,0 chrIV 220373 . G A 2824 filter AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=6.8277;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=13;QD=10.78;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:2857,279,0 chrIV 220385 . A G 2352 filter AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=8.1657;MLEAC=2;MLEAF=1.00;MQ=24.08;MQ0=13;QD=8.43;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:99:2385,258,0 chrIV 220433 . G A 4025.01 filter AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=2.6487;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=4;QD=15.48;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,259:260:99:4025,415,0 chrIV 220445 . G A 4537.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=1;QD=18.59;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,241:244:99:4537,448,0 chrIV 220463 . C T 5026.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=5.1934;MLEAC=2;MLEAF=1.00;MQ=31.72;MQ0=1;QD=19.26;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:5026,499,0 chrIV 221090 . C A 3134 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.25;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3167,307,0 chrIV 221175 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2689,270,0 chrIV 221227 . C G 2484 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=26.15;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2517,258,0 chrIV 221471 . A G 975 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1008,102,0 chrIV 221511 . C T 711 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.31;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,34:35:75:744,75,0 chrIV 221706 . G A 2315 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=27.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:2348,234,0 chrIV 221893 . C T 3627.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=23.40;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3627,370,0 chrIV 221899 . T A 3725.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=22.71;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3725,364,0 chrIV 221995 . G A 4592.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=28.00;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4592,451,0 chrIV 222025 . C A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4319;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.81;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3945,394,0 chrIV 222073 . A G 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=0.036;QD=19.37;ReadPosRankSum=1.660;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:2880,297,0 chrIV 222082 . A G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=0.577;QD=19.10;ReadPosRankSum=1.682;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2688,279,0 chrIV 222257 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=25.22;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3160,310,0 chrIV 222481 . G A 3635.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0096;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.96;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3635,364,0 chrIV 222741 . C A 4884.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.06;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4884,490,0 chrIV 223242 . G A 4083.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.30;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4083,427,0 chrIV 223377 . C T 3714.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3714,390,0 chrIV 223943 . G A 3570.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.14;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3570,346,0 chrIV 224112 . C T 3751.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.34;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3751,367,0 chrIV 224747 . G A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.4669;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.74;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3744,367,0 chrIV 224809 . G A 4553.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.26;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4553,439,0 chrIV 224854 . G A 4781.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.56;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4781,472,0 chrIV 224966 . C G 4555.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.0373;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4555,466,0 chrIV 225248 . C T 4263.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.0362;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.78;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4263,430,0 chrIV 225458 . A G 4507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.034;DP=181;Dels=0.00;FS=6.593;HaplotypeScore=10.4908;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.377;QD=24.90;ReadPosRankSum=0.142;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4507,425,0 chrIV 225743 . T C 4482.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.7112;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.10;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4482,454,0 chrIV 226059 . T C 4793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=182;Dels=0.00;FS=2.975;HaplotypeScore=11.9113;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.158;QD=26.34;ReadPosRankSum=2.395;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:4793,484,0 chrIV 226148 . A G 5029.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.3068;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.66;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5029,514,0 chrIV 226209 . C T 5834.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.26;SB=-3.194e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5834,571,0 chrIV 226314 . C T 5591.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=15.8079;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.20;SB=-2.930e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5591,544,0 chrIV 227035 . A G 5325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.0702;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.294;QD=26.63;ReadPosRankSum=0.450;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:1,199:200:99:5325,568,0 chrIV 227115 . A G 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.0190;MLEAC=2;MLEAF=1.00;MQ=32.18;MQ0=0;MQRankSum=-1.449;QD=18.56;ReadPosRankSum=1.710;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2984,303,0 chrIV 227127 . A G 2969 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=0;QD=17.57;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3002,309,0 chrIV 227133 . C T 3204.99 SnpCluster AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.67;MQ0=0;QD=16.78;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3238,333,0 chrIV 227138 . G A 3521.01 SnpCluster AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=17.78;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3521,349,0 chrIV 227141 . G A 3594.01 SnpCluster AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.31;MQ0=0;QD=17.36;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3594,355,0 chrIV 227151 . G C 3997.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=0;QD=18.17;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:3997,420,0 chrIV 227285 . T A 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=3.082;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.69;MQ0=0;MQRankSum=-0.199;QD=18.70;ReadPosRankSum=1.647;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2314,237,0 chrIV 227289 . A G 2250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=120;Dels=0.00;FS=3.047;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=-1.486;QD=18.75;ReadPosRankSum=2.388;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2283,240,0 chrIV 227299 . A G 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=122;Dels=0.00;FS=7.053;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;MQRankSum=-1.372;QD=18.07;ReadPosRankSum=2.409;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2238,234,0 chrIV 227300 . A G 2230 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;QD=18.28;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2263,240,0 chrIV 227375 . T A 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.5764;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=0.111;QD=22.75;ReadPosRankSum=1.683;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3241,339,0 chrIV 227641 . C T 5811.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.4728;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=1;QD=25.94;SB=-2.910e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5811,580,0 chrIV 228112 . T G 5256.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=277;Dels=0.00;FS=2.825;HaplotypeScore=7.4717;MLEAC=2;MLEAF=1.00;MQ=39.34;MQ0=71;MQRankSum=2.354;QD=18.97;ReadPosRankSum=1.599;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:37,239:277:99:5256,526,0 chrIV 228430 . A G 5068.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.386;DP=218;Dels=0.00;FS=9.153;HaplotypeScore=3.5001;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=5;MQRankSum=3.419;QD=23.25;ReadPosRankSum=3.403;SB=-3.016e+03 GT:AD:DP:GQ:PL 1/1:4,213:218:99:5068,499,0 chrIV 228436 . C T 5144.01 filter AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.4681;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=5;QD=22.56;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5144,517,0 chrIV 228508 . G C 4681.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.0325;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=23.76;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4681,490,0 chrIV 228893 . T C 1973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.227;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.972;QD=23.77;ReadPosRankSum=1.648;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,81:83:99:2006,210,0 chrIV 229033 . C T 2561 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1225;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.34;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2594,264,0 chrIV 229042 . T C 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=126;Dels=0.00;FS=11.577;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=0.863;QD=20.02;ReadPosRankSum=2.896;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:3,122:126:99:2556,267,0 chrIV 229260 . T C 2192 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.37;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2225,231,0 chrIV 229467 . G A 3548.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=26.48;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3548,355,0 chrIV 229690 . A C 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=0.296;QD=22.69;ReadPosRankSum=1.704;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2824,291,0 chrIV 229702 . T C 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.382;DP=118;Dels=0.00;FS=9.190;HaplotypeScore=87.9376;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;MQRankSum=-1.021;QD=19.37;ReadPosRankSum=3.291;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:4,112:118:99:2319,240,0 chrIV 229828 . G C 3927.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.1221;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.34;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3927,406,0 chrIV 229843 . A C 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=3.754;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=0.954;QD=20.87;ReadPosRankSum=1.713;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3735,385,0 chrIV 229868 . T A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.97;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3565,349,0 chrIV 230153 . A C 5335.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.2495;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.05;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5335,535,0 chrIV 230620 . T A 1866 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.92;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1899,195,0 chrIV 230677 . T C 2778 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.72;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2811,282,0 chrIV 230893 . C T 5946.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.19;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5946,601,0 chrIV 231260 . G A 5091.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.14;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:0,216:220:99:5091,520,0 chrIV 231317 . A G 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=163;Dels=0.00;FS=8.332;HaplotypeScore=15.8243;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.389;QD=22.83;ReadPosRankSum=2.358;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:3722,376,0 chrIV 231400 . A T 5315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=3.301;HaplotypeScore=7.9114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.646;QD=26.44;ReadPosRankSum=1.715;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:5315,529,0 chrIV 231525 . A G 6069.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=27.46;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:6069,613,0 chrIV 231562 . T C 6515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=254;Dels=0.00;FS=5.807;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.418;QD=25.65;ReadPosRankSum=2.948;SB=-2.986e+03 GT:AD:DP:GQ:PL 1/1:3,248:254:99:6515,679,0 chrIV 231629 . A G 4920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=190;Dels=0.00;FS=6.137;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.404;QD=25.89;ReadPosRankSum=2.423;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:2,186:190:99:4920,493,0 chrIV 231698 . G A 4614.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.63;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4614,457,0 chrIV 231756 . G A 4852.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.0791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4852,481,0 chrIV 231806 . A G 3204.99 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3238,331,0 chrIV 231960 . A G 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.4455;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.192;QD=22.70;ReadPosRankSum=1.694;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2076,216,0 chrIV 232127 . A G 773 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.77;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:81:806,81,0 chrIV 232181 . C T 1104 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.08;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1137,114,0 chrIV 232245 . C T 1181 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.62;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1214,120,0 chrIV 232386 . C G 2462 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=29.31;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2495,249,0 chrIV 232777 . C T 3954.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=21.85;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3954,394,0 chrIV 232783 . G A 4043.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=22.34;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4043,418,0 chrIV 232831 . T C 4416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.8807;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=0.501;QD=22.30;ReadPosRankSum=1.714;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4416,457,0 chrIV 232936 . A G 5962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=236;Dels=0.00;FS=3.297;HaplotypeScore=12.0888;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.641;QD=25.26;ReadPosRankSum=1.717;SB=-3.205e+03 GT:AD:DP:GQ:PL 1/1:1,234:236:99:5962,589,0 chrIV 232994 . A G 7322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=289;Dels=0.00;FS=3.610;HaplotypeScore=16.3675;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.151;QD=25.34;ReadPosRankSum=1.720;SB=-3.515e+03 GT:AD:DP:GQ:PL 1/1:1,286:288:99:7322,745,0 chrIV 233071 . A C 6798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=14.9577;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=1.543;QD=25.18;ReadPosRankSum=1.873;SB=-3.746e+03 GT:AD:DP:GQ:PL 1/1:2,266:270:99:6798,697,0 chrIV 233134 . A G 5737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.258;DP=250;Dels=0.00;FS=9.014;HaplotypeScore=25.0595;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.718;QD=22.95;ReadPosRankSum=3.356;SB=-3.144e+03 GT:AD:DP:GQ:PL 1/1:4,245:250:99:5737,607,0 chrIV 233173 . G A 5038.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.07;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5038,523,0 chrIV 233198 . C T 5984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=12.0587;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-1.195;QD=21.07;ReadPosRankSum=1.683;SB=-3.360e+03 GT:AD:DP:GQ:PL 1/1:1,283:284:99:5984,598,0 chrIV 233551 . C A 4746.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.11;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4746,472,0 chrIV 233636 . G A 3515.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.28;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3515,343,0 chrIV 233915 . A C 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.021;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.626;QD=18.65;ReadPosRankSum=2.307;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:2,67:71:99:1357,141,0 chrIV 234097 . A T 1547 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=62.7437;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=2;QD=19.34;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1580,153,0 chrIV 234153 . C T 1839 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.77;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1872,186,0 chrIV 234231 . C A 3522.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.52;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3522,367,0 chrIV 234289 . G A 3456.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=26.79;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3456,352,0 chrIV 234361 . T C 2967 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=25.80;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:3000,309,0 chrIV 234547 . C G 3873.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.6406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.35;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:3873,394,0 chrIV 234968 . T C 4381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.856;DP=175;Dels=0.00;FS=10.459;HaplotypeScore=11.4658;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.340;QD=25.03;ReadPosRankSum=4.120;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:6,168:175:99:4381,448,0 chrIV 235466 . T A 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;DP=152;Dels=0.00;FS=5.676;HaplotypeScore=18.0243;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.132;QD=24.92;ReadPosRankSum=2.888;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3788,373,0 chrIV 235604 . T C 3918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.447;QD=24.80;ReadPosRankSum=1.622;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3918,400,0 chrIV 235676 . A G 3900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.048;QD=24.07;ReadPosRankSum=1.711;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3900,397,0 chrIV 235902 . C G 1660 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.56;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1693,168,0 chrIV 236074 . A G 1092 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.23;MQ0=0;QD=15.38;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1125,111,0 chrIV 236080 . T C 964 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=12.68;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:997,102,0 chrIV 236082 . A T 1066 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=14.03;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1099,108,0 chrIV 236289 . A G 5561.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.7668;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=25.99;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:5561,571,0 chrIV 236604 . C T 4912.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=23.84;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4912,475,0 chrIV 236610 . A G 4576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;MQRankSum=-1.392;QD=21.89;ReadPosRankSum=2.391;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4576,475,0 chrIV 236619 . T C 4565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=216;Dels=0.00;FS=4.832;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;MQRankSum=-1.139;QD=21.13;ReadPosRankSum=1.716;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4565,478,0 chrIV 236627 . G A 5045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=1.070;QD=22.32;ReadPosRankSum=0.731;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:5045,493,0 chrIV 236928 . A G 4535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.6979;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.252;QD=23.02;ReadPosRankSum=1.714;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4535,469,0 chrIV 237186 . A C 5198.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.84;SB=-3.004e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5198,523,0 chrIV 237219 . G A 5948.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=16.0322;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.53;SB=-3.502e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:5948,619,0 chrIV 237312 . C T 6121.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=20.0683;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.68;SB=-2.839e+03 GT:AD:DP:GQ:PL 1/1:0,245:248:99:6121,649,0 chrIV 237441 . T G 8156.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=21.3829;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.57;SB=-3.687e+03 GT:AD:DP:GQ:PL 1/1:0,328:332:99:8156,826,0 chrIV 237522 . G A 7061.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=17.5090;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=24.86;SB=-3.598e+03 GT:AD:DP:GQ:PL 1/1:0,284:284:99:7061,703,0 chrIV 237570 . G A 7708.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.39;SB=-3.363e+03 GT:AD:DP:GQ:PL 1/1:0,316:316:99:7708,766,0 chrIV 237588 . T C 7596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.978;DP=316;Dels=0.00;FS=13.785;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.557;QD=24.04;ReadPosRankSum=2.959;SB=-3.121e+03 GT:AD:DP:GQ:PL 1/1:3,312:316:99:7596,760,0 chrIV 237897 . G A 5475.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.00;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5475,541,0 chrIV 238826 . G T 4125.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.1359;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4125,418,0 chrIV 239643 . T C 4465.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=24.40;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4465,454,0 chrIV 239899 . A G 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.9703;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-1.127;QD=23.75;ReadPosRankSum=1.711;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3943,394,0 chrIV 239907 . C T 3639.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.78;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3639,364,0 chrIV 239984 . C T 2451 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.6221;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.93;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,119:123:99:2484,249,0 chrIV 240060 . T C 2652 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.74;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2685,259,0 chrIV 240090 . T C 2141 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.39;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2174,219,0 chrIV 240232 . G A 3202 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=26.91;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3235,322,0 chrIV 240375 . G C 4591.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=25.36;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,176:181:99:4591,472,0 chrIV 240480 . T C 5935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=234;Dels=0.00;FS=3.161;HaplotypeScore=8.2626;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.273;QD=25.36;ReadPosRankSum=1.688;SB=-3.232e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:5935,613,0 chrIV 240540 . C G 5535.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.4572;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.26;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,234:238:99:5535,568,0 chrIV 240564 . T G 4981.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.6647;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.06;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4981,502,0 chrIV 240647 . T C 5683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=237;Dels=0.00;FS=3.979;HaplotypeScore=19.0206;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.673;QD=23.98;ReadPosRankSum=1.703;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:1,234:237:99:5683,568,0 chrIV 240868 . G C 4574.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.3494;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.72;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4574,460,0 chrIV 241166 . G A 3993.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.80;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3993,394,0 chrIV 241206 . T C 3288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=4.590;HaplotypeScore=6.6868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.314;QD=23.15;ReadPosRankSum=1.708;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3288,342,0 chrIV 242001 . G C 3180 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.8185;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.06;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3213,325,0 chrIV 242997 . G A 5013.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.3033;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.94;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5013,502,0 chrIV 244138 . T G 6637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=18.2732;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.123;QD=25.93;ReadPosRankSum=1.719;SB=-2.891e+03 GT:AD:DP:GQ:PL 1/1:1,255:256:99:6637,670,0 chrIV 244279 . G C 6306.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.6979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-3.267e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:6306,649,0 chrIV 246448 . G C 3568.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.78;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3568,361,0 chrIV 246743 . G C 4289.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.8520;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.57;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4289,442,0 chrIV 248088 . G A 2648 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.43;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2681,273,0 chrIV 248513 . G C 3083 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.4485;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.58;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3116,321,0 chrIV 248600 . C G 2910 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2943,306,0 chrIV 248899 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.81;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3459,349,0 chrIV 249022 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.687;DP=140;Dels=0.00;FS=10.758;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.310;QD=24.31;ReadPosRankSum=3.003;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:6,131:140:99:3403,327,0 chrIV 249264 . C T 3940.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.5413;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.10;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3940,397,0 chrIV 249432 . C T 2922 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.55;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2955,298,0 chrIV 249508 . A G 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=150;Dels=0.00;FS=3.016;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.625;QD=26.35;ReadPosRankSum=2.417;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3953,400,0 chrIV 249541 . G A 4629.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.86;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4629,469,0 chrIV 249579 . G A 4249.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4249,418,0 chrIV 249627 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=159;Dels=0.00;FS=4.161;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.144;QD=24.83;ReadPosRankSum=1.710;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3948,412,0 chrIV 249679 . T C 4616.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=25.22;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4616,472,0 chrIV 249699 . C T 4549.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.7056;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=24.59;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4549,451,0 chrIV 250434 . G A 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.148;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-0.325;QD=21.95;ReadPosRankSum=0.271;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2843,286,0 chrIV 250440 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.5388;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.66;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3115,307,0 chrIV 250515 . T C 3752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.648;DP=165;Dels=0.00;FS=6.101;HaplotypeScore=9.0755;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.562;QD=22.74;ReadPosRankSum=2.957;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3752,379,0 chrIV 250548 . T C 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.6160;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.905;QD=25.71;ReadPosRankSum=1.674;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4653,478,0 chrIV 250746 . A G 6421.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=14.4722;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-2.850e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:6421,646,0 chrIV 251017 . G A 4278.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.87;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4278,430,0 chrIV 251082 . A G 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.243;DP=146;Dels=0.00;FS=8.064;HaplotypeScore=14.0989;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.797;QD=22.75;ReadPosRankSum=3.399;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:4,142:146:99:3322,340,0 chrIV 251097 . G A 3175 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=24.61;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3208,316,0 chrIV 251115 . C T 2779 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.41;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2812,282,0 chrIV 251239 . A G 2138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.306;QD=20.76;ReadPosRankSum=1.698;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2171,198,0 chrIV 251534 . C T 4698.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.4627;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=25.96;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4698,466,0 chrIV 251630 . T A 5787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.531;QD=25.72;ReadPosRankSum=1.686;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5787,595,0 chrIV 251673 . T C 5702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.0470;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=1.014;QD=25.68;ReadPosRankSum=1.716;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:5702,595,0 chrIV 251719 . G A 4725.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.77;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4725,469,0 chrIV 251724 . G A 4562.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.72;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4562,475,0 chrIV 251995 . T A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=27.30;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3494,343,0 chrIV 252063 . T C 3860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=3.343;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.081;QD=25.91;ReadPosRankSum=1.709;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3860,397,0 chrIV 252202 . T A 5294.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.2398;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=26.74;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:5294,526,0 chrIV 252231 . C T 4818.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.96;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4818,493,0 chrIV 252312 . C T 4314.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4314,427,0 chrIV 252376 . A G 5263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.5856;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.709;QD=23.92;ReadPosRankSum=1.701;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5263,538,0 chrIV 252749 . G T 5762.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=13.5010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:5762,574,0 chrIV 252925 . G A 5466.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.07;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5466,565,0 chrIV 253388 . G A 1969 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.51;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2002,195,0 chrIV 253390 . T C 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=97;Dels=0.00;FS=3.054;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.757;QD=19.46;ReadPosRankSum=2.270;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:2,94:97:99:1921,195,0 chrIV 253534 . G A 3448.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.9297;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=26.52;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3448,331,0 chrIV 253602 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=24.96;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2828,283,0 chrIV 253830 . A G 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=99;Dels=0.00;FS=6.431;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-1.043;QD=22.76;ReadPosRankSum=2.400;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2286,228,0 chrIV 253832 . T A 2148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.679;QD=21.06;ReadPosRankSum=1.630;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2181,225,0 chrIV 253859 . G A 2269 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.63;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2302,237,0 chrIV 254130 . G A 4004.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.9815;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.34;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4004,403,0 chrIV 254813 . T G 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=127;Dels=0.01;FS=6.561;HaplotypeScore=13.7353;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.010;QD=20.33;ReadPosRankSum=2.371;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2615,276,0 chrIV 254856 . A G 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=3.559;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.411;QD=24.36;ReadPosRankSum=1.644;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2932,298,0 chrIV 255055 . C A 3933.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.71;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3933,388,0 chrIV 255364 . G A 5482.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=15.3850;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.50;SB=-2.942e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5482,565,0 chrIV 255481 . G A 3931.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.88;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3931,391,0 chrIV 255562 . A T 4349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.171;QD=26.68;ReadPosRankSum=1.668;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4349,430,0 chrIV 255722 . C T 1873 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4655;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.41;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1906,183,0 chrIV 255870 . C T 1769 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.57;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1802,183,0 chrIV 255933 . C T 1238 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.91;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1271,126,0 chrIV 256213 . T C 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.477;QD=24.73;ReadPosRankSum=1.626;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:4056,409,0 chrIV 256413 . A G 1638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.803;QD=19.98;ReadPosRankSum=1.648;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1671,168,0 chrIV 256985 . T G 2369 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2402,243,0 chrIV 257223 . G A 2593 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2626,261,0 chrIV 257586 . G T 4100.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=23.70;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4100,400,0 chrIV 257828 . C T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3755,373,0 chrIV 257984 . C T 4817.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.0807;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.35;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4817,481,0 chrIV 258190 . T C 3787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=171;Dels=0.00;FS=6.961;HaplotypeScore=14.3970;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.438;QD=22.15;ReadPosRankSum=2.421;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3787,376,0 chrIV 258250 . G C 3697.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.9565;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.25;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,153:159:99:3697,376,0 chrIV 258728 . G T 5213.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=25.55;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5213,511,0 chrIV 258793 . G A 4032.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.4414;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.68;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4032,412,0 chrIV 258800 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.62;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3800,397,0 chrIV 258830 . C A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.31;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3800,379,0 chrIV 258881 . G A 4247.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=25.13;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4247,424,0 chrIV 259049 . G A 5098.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.7652;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=25.49;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:5098,514,0 chrIV 259211 . A G 4410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.7600;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.057;QD=24.23;ReadPosRankSum=1.713;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4410,454,0 chrIV 259676 . T C 4369.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.11;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4369,445,0 chrIV 259808 . A C 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-1.732;QD=23.50;ReadPosRankSum=1.701;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2712,279,0 chrIV 259889 . G T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3456,346,0 chrIV 259996 . A T 2334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=4.963;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=0.418;QD=20.12;ReadPosRankSum=1.643;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2367,237,0 chrIV 260003 . A G 2472 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5954;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.16;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2505,261,0 chrIV 260036 . G A 3155 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.35;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3188,319,0 chrIV 260180 . T C 3383.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.51;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3383,348,0 chrIV 260233 . A G 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=147;Dels=0.00;FS=2.679;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.627;QD=23.95;ReadPosRankSum=2.349;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3521,361,0 chrIV 260728 . A G 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.7041;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.600;QD=19.40;ReadPosRankSum=1.521;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2574,258,0 chrIV 260778 . T C 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.00;FS=7.292;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.124;QD=21.64;ReadPosRankSum=2.412;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:2,127:131:99:2868,292,0 chrIV 260870 . A C 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4507;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.610;QD=23.57;ReadPosRankSum=1.708;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3370,346,0 chrIV 261002 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.03;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3329,340,0 chrIV 261099 . A T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=26.86;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3519,352,0 chrIV 261140 . G C 3225.28 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=25.00;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3258,336,0 chrIV 261167 . T C 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.362;QD=25.32;ReadPosRankSum=1.680;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3393,343,0 chrIV 261197 . A G 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.808;QD=23.27;ReadPosRankSum=1.655;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3175,325,0 chrIV 261254 . C T 2900 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.66;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2933,292,0 chrIV 261458 . C T 3828.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.22;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3828,385,0 chrIV 261620 . A G 4055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=163;Dels=0.00;FS=5.903;HaplotypeScore=11.4505;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.019;QD=24.88;ReadPosRankSum=2.957;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:3,159:163:99:4055,409,0 chrIV 261828 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.99;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3535,361,0 chrIV 262117 . A G 2726 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.34;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2759,279,0 chrIV 262128 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.52;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2915,289,0 chrIV 262380 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=26.62;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3754,367,0 chrIV 262660 . A G 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=180;Dels=0.00;FS=3.034;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.853;QD=22.54;ReadPosRankSum=2.395;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4057,412,0 chrIV 262662 . G T 3987.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.40;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3987,397,0 chrIV 262793 . T C 5119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.747;QD=24.03;ReadPosRankSum=1.683;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:5119,535,0 chrIV 262975 . A G 4921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.756;DP=203;Dels=0.00;FS=5.639;HaplotypeScore=12.9070;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.234;QD=24.24;ReadPosRankSum=2.856;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:3,199:203:99:4921,505,0 chrIV 263532 . T A 4810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=203;Dels=0.00;FS=3.832;HaplotypeScore=9.8391;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.510;QD=23.69;ReadPosRankSum=1.715;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4810,493,0 chrIV 263773 . T A 4164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=175;Dels=0.00;FS=5.809;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.058;QD=23.79;ReadPosRankSum=2.960;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:4164,421,0 chrIV 264134 . C G 2924 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2957,309,0 chrIV 264197 . G A 2563 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.29;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2596,264,0 chrIV 264290 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.84;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1474,144,0 chrIV 264370 . C T 643 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:676,69,0 chrIV 264432 . A T 2204 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4008;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=17.77;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2237,219,0 chrIV 265445 . G A 6853.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=6.6001;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.89;SB=-3.443e+03 GT:AD:DP:GQ:PL 1/1:0,327:328:99:6853,724,0 chrIV 265452 . T G 6941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=8.2839;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=1.085;QD=21.62;ReadPosRankSum=1.678;SB=-3.471e+03 GT:AD:DP:GQ:PL 1/1:1,320:321:99:6941,709,0 chrIV 265606 . G T 5435.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.7511;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.15;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:5435,538,0 chrIV 265841 . G A 4053.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.27;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4053,400,0 chrIV 266053 . G A 6608.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=19.1315;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.91;SB=-3.457e+03 GT:AD:DP:GQ:PL 1/1:0,253:255:99:6608,646,0 chrIV 266248 . G A 5280.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.3729;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.67;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5280,535,0 chrIV 266302 . T C 4954.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.8588;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=24.52;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4954,529,0 chrIV 266398 . A G 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=171;Dels=0.00;FS=3.638;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.901;QD=21.74;ReadPosRankSum=1.631;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3718,373,0 chrIV 266407 . A T 3580.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=21.06;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3580,364,0 chrIV 266671 . G A 4682.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.5583;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=24.51;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4682,469,0 chrIV 266733 . A C 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.290;DP=167;Dels=0.00;FS=5.251;HaplotypeScore=8.9034;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=-0.323;QD=22.29;ReadPosRankSum=3.258;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:4,161:167:99:3722,379,0 chrIV 266739 . T C 3478.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.01;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3478,361,0 chrIV 266824 . T C 4427.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.5342;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.19;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4427,451,0 chrIV 266920 . A G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=3.690;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.100;QD=22.69;ReadPosRankSum=1.707;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3164,322,0 chrIV 267359 . A T 3514.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3514,355,0 chrIV 268132 . T C 4219.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.88;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4219,430,0 chrIV 268432 . C T 6020.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.15;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:6020,622,0 chrIV 268701 . A T 3118 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=22.43;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3151,316,0 chrIV 268714 . A G 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=-1.439;QD=20.68;ReadPosRankSum=1.683;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2970,301,0 chrIV 268735 . G T 2730 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=17.84;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2763,288,0 chrIV 268919 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=24.54;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3484,355,0 chrIV 269089 . G C 4713.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4713,484,0 chrIV 269350 . G A 3932.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.83;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3932,409,0 chrIV 269406 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=24.88;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3508,346,0 chrIV 269429 . C T 3556.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=24.03;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3556,352,0 chrIV 269772 . C T 3287.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.7427;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.09;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3287,337,0 chrIV 269891 . A G 3032 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=124;Dels=0.00;FS=3.035;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.843;QD=24.45;ReadPosRankSum=2.271;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:3065,312,0 chrIV 269895 . T C 2936 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=3.197;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.218;QD=24.67;ReadPosRankSum=1.703;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2969,303,0 chrIV 269898 . A C 2750 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=23.11;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2783,291,0 chrIV 270080 . T C 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=118;Dels=0.00;FS=4.347;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.258;QD=24.35;ReadPosRankSum=1.703;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2906,294,0 chrIV 270158 . C T 2303 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=7.6618;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.74;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2336,231,0 chrIV 270285 . G A 6120.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=27.57;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:6120,601,0 chrIV 270858 . A T 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=157;Dels=0.00;FS=6.104;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.493;QD=26.01;ReadPosRankSum=2.371;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:4084,409,0 chrIV 270909 . C G 4117.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.66;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4117,421,0 chrIV 271629 . C G 6703.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=15.5141;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.83;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,267:270:99:6703,682,0 chrIV 272031 . G T 6132.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=18.1284;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.71;SB=-2.907e+03 GT:AD:DP:GQ:PL 1/1:0,267:270:99:6132,607,0 chrIV 272291 . A G 6355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.062;DP=255;Dels=0.00;FS=10.563;HaplotypeScore=14.4763;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.071;QD=24.92;ReadPosRankSum=4.118;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:6,246:255:99:6355,652,0 chrIV 272385 . A C 5142.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=19.4840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:5142,529,0 chrIV 272421 . A G 4956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=200;Dels=0.00;FS=2.709;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.277;QD=24.78;ReadPosRankSum=2.351;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:4956,514,0 chrIV 272848 . G T 4625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=3.583;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.382;QD=25.84;ReadPosRankSum=-0.272;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4625,460,0 chrIV 272994 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.55;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3032,304,0 chrIV 273139 . C A 2006 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=17.6074;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.29;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2039,201,0 chrIV 273171 . C T 2048 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.92;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:2081,204,0 chrIV 273273 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=24.18;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2354,231,0 chrIV 273339 . A G 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=5.244;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.696;QD=25.01;ReadPosRankSum=1.696;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2459,258,0 chrIV 273764 . G A 1753 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1786,183,0 chrIV 273848 . C T 2227 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=26.51;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2260,231,0 chrIV 274409 . A T 6320.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.5374;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=26.44;SB=-3.405e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:6320,628,0 chrIV 274589 . T C 4700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=212;Dels=0.00;FS=7.183;HaplotypeScore=6.4227;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=0.006;QD=22.17;ReadPosRankSum=2.415;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4700,481,0 chrIV 274595 . G A 4587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.6445;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.656;QD=22.16;ReadPosRankSum=0.437;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4587,441,0 chrIV 274672 . A G 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=0.709;QD=23.49;ReadPosRankSum=1.693;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4134,418,0 chrIV 274809 . A G 3283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=142;Dels=0.00;FS=2.849;HaplotypeScore=9.6766;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.390;QD=23.12;ReadPosRankSum=2.363;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3283,337,0 chrIV 274922 . A T 1755 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.40;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1788,177,0 chrIV 274930 . A G 2007 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.55;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2040,204,0 chrIV 275180 . A T 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=6.435;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-0.984;QD=26.49;ReadPosRankSum=1.653;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2364,237,0 chrIV 275205 . A G 2321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=91;Dels=0.01;FS=8.033;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.876;QD=25.51;ReadPosRankSum=1.693;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:2354,240,0 chrIV 275289 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.96;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3253,319,0 chrIV 275448 . T C 5020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=196;Dels=0.00;FS=2.894;HaplotypeScore=6.6698;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.951;QD=25.61;ReadPosRankSum=2.412;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:5020,520,0 chrIV 275562 . A G 5152.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.9538;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.19;SB=-2.936e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5152,520,0 chrIV 275715 . C T 5859.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=24.51;SB=-2.922e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5859,574,0 chrIV 275730 . C T 5630.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=24.48;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5630,562,0 chrIV 276015 . A G 4133.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.2748;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.22;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:4133,435,0 chrIV 276204 . G A 4629.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.4498;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.30;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4629,466,0 chrIV 276375 . T G 5558.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.4804;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.17;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5558,571,0 chrIV 277137 . A G 5745.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=18.0737;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.53;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5745,601,0 chrIV 277276 . C T 5780.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.5368;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.92;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:0,219:223:99:5780,577,0 chrIV 277603 . C T 6575.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=7.5488;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.39;SB=-3.682e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:6575,649,0 chrIV 277642 . G A 7962.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=18.9529;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.60;SB=-3.963e+03 GT:AD:DP:GQ:PL 1/1:0,308:311:99:7962,785,0 chrIV 277922 . G A 5905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.289;QD=23.53;ReadPosRankSum=-0.859;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:1,249:251:99:5905,592,0 chrIV 278164 . C T 4428.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4428,439,0 chrIV 278671 . C T 4674.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=24.34;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4674,463,0 chrIV 278692 . G A 4289.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.57;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4289,442,0 chrIV 278914 . G A 3990.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.09;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3990,412,0 chrIV 279031 . T C 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.460;QD=25.16;ReadPosRankSum=1.688;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:1,157:162:99:4076,406,0 chrIV 279037 . C T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=24.05;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3752,385,0 chrIV 279109 . T C 3305.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.12;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3305,334,0 chrIV 279796 . C T 4714.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.4814;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4714,472,0 chrIV 280191 . T C 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=77;Dels=0.00;FS=4.437;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.178;QD=23.78;ReadPosRankSum=1.686;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:1,74:77:99:1864,192,0 chrIV 280295 . T C 2157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-1.669;QD=19.79;ReadPosRankSum=1.669;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2190,228,0 chrIV 280298 . T A 2334 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=20.12;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2367,240,0 chrIV 280697 . C T 4266.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.1371;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.34;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4266,433,0 chrIV 280802 . A T 3859.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.0408;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=25.22;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3859,391,0 chrIV 280844 . T C 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=0.722;QD=21.53;ReadPosRankSum=1.684;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3176,327,0 chrIV 280847 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=22.71;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3339,334,0 chrIV 280976 . A G 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.464;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=1.276;QD=21.25;ReadPosRankSum=1.705;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2795,297,0 chrIV 281045 . T C 3328.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.94;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3328,343,0 chrIV 281099 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.7174;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.19;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3316,337,0 chrIV 281207 . C T 2742 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=21.26;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2775,288,0 chrIV 281210 . C T 2830 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=21.94;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2863,294,0 chrIV 281213 . G A 2729 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=21.66;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2762,273,0 chrIV 281306 . C A 4325.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.30;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4325,454,0 chrIV 281327 . T C 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-0.182;QD=23.65;ReadPosRankSum=2.406;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3997,415,0 chrIV 281392 . T C 3539.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=22.69;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3539,361,0 chrIV 281474 . A G 4540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.3585;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-0.665;QD=24.28;ReadPosRankSum=1.638;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4540,481,0 chrIV 281643 . C T 4280.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.3940;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.41;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4280,415,0 chrIV 281647 . A G 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=187;Dels=0.00;FS=3.250;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.279;QD=20.56;ReadPosRankSum=1.713;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3844,385,0 chrIV 281944 . C G 4376.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.40;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4376,448,0 chrIV 281966 . T A 3666.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.20;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3666,373,0 chrIV 282024 . T A 2770 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=10.6202;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.89;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2803,277,0 chrIV 282129 . A G 4991.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=25.46;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4991,505,0 chrIV 282145 . G A 4794.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.3068;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=24.58;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4794,496,0 chrIV 282844 . G A 8343.01 PASS AC=2;AF=1.00;AN=2;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=11.4556;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.84;SB=-4.775e+03 GT:AD:DP:GQ:PL 1/1:0,349:350:99:8343,833,0 chrIV 282856 . A G 7918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=353;Dels=0.00;FS=3.085;HaplotypeScore=14.3944;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.915;QD=22.43;ReadPosRankSum=1.722;SB=-5.000e+03 GT:AD:DP:GQ:PL 1/1:1,351:353:99:7918,814,0 chrIV 283024 . G A 8064.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=22.3883;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.31;SB=-4.096e+03 GT:AD:DP:GQ:PL 1/1:0,346:346:99:8064,806,0 chrIV 283570 . C A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.6178;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=27.92;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:4160,403,0 chrIV 283730 . A G 4236.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.6565;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=23.66;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4236,436,0 chrIV 283742 . G A 4335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.2110;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=1.641;QD=22.46;ReadPosRankSum=-0.553;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:4335,403,0 chrIV 283746 . A G 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.2978;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=1.053;QD=21.08;ReadPosRankSum=-0.844;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:4237,436,0 chrIV 283794 . A C 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.0606;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-1.160;QD=19.92;ReadPosRankSum=1.715;SB=-2.864e+03 GT:AD:DP:GQ:PL 1/1:1,205:209:99:4163,433,0 chrIV 283814 . A G 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=180;Dels=0.00;FS=6.195;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-2.241;QD=22.47;ReadPosRankSum=2.394;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:2,175:180:99:4044,409,0 chrIV 283896 . A G 4302.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.07;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4302,433,0 chrIV 284171 . C T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.5663;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.17;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,135:140:99:3664,370,0 chrIV 284746 . C T 3148 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.18;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3181,313,0 chrIV 285457 . C T 3846.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.89;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3846,376,0 chrIV 285472 . C T 4276.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.2263;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=24.02;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4276,424,0 chrIV 285505 . A G 3664.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.7334;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=23.34;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3664,373,0 chrIV 285562 . G A 5364.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.2179;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=25.54;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5364,526,0 chrIV 285994 . A C 5857.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=32.2812;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.15;SB=-3.192e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:5857,613,0 chrIV 286258 . A G 6313.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.95;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:6313,634,0 chrIV 286630 . C T 5310.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.4476;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.47;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5310,523,0 chrIV 287409 . T C 6146.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=19.8846;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.56;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:0,281:285:99:6146,637,0 chrIV 287439 . C T 4792.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.0589;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.49;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:4792,472,0 chrIV 287535 . T C 5711.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.8120;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.20;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5711,586,0 chrIV 287634 . G A 4685.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=16.7694;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.89;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4685,490,0 chrIV 288063 . G A 5056.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.4790;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.67;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:5056,529,0 chrIV 288140 . G T 5625.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=21.8500;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,226:230:99:5625,556,0 chrIV 288549 . C T 4081.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.3320;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4081,400,0 chrIV 288597 . C T 4239.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.1628;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4239,439,0 chrIV 288667 . T G 4705.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=20.1630;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.38;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,189:193:99:4705,475,0 chrIV 288760 . C T 4367.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.8613;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.67;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4367,436,0 chrIV 288918 . C T 5687.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=6.6678;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.83;SB=-2.992e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5687,556,0 chrIV 288945 . G A 6759.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.60;SB=-3.286e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:6759,661,0 chrIV 289365 . G A 3270.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3564;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.94;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3270,325,0 chrIV 289515 . T A 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=3.979;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=1.708;QD=23.73;ReadPosRankSum=1.613;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3441,352,0 chrIV 289631 . T C 3677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.698;QD=25.53;ReadPosRankSum=1.708;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3677,376,0 chrIV 289917 . A T 5724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.619;DP=227;Dels=0.00;FS=18.955;HaplotypeScore=20.6009;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.355;QD=25.22;ReadPosRankSum=3.804;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:5,222:227:99:5724,568,0 chrIV 290077 . G A 4978.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.01;FS=0.000;HaplotypeScore=8.3342;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.32;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4978,511,0 chrIV 290079 . C T 4956.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.01;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=21.83;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:4956,508,0 chrIV 290096 . A G 5416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=253;Dels=0.00;FS=3.349;HaplotypeScore=3.4879;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=-0.582;QD=21.41;ReadPosRankSum=1.718;SB=-3.284e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:5416,547,0 chrIV 290616 . C T 4103.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.0658;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.57;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4103,418,0 chrIV 290715 . G C 4297.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=17.5689;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.06;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4297,430,0 chrIV 291018 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=178;Dels=0.00;FS=3.267;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.139;QD=21.87;ReadPosRankSum=1.652;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:1,174:178:99:3893,403,0 chrIV 291204 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=158;Dels=0.00;FS=3.181;HaplotypeScore=11.9146;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.600;QD=23.47;ReadPosRankSum=1.665;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3709,376,0 chrIV 291309 . G A 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=119;Dels=0.00;FS=3.643;HaplotypeScore=7.6020;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.206;QD=24.45;ReadPosRankSum=0.910;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2943,292,0 chrIV 291351 . G A 4053.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4053,397,0 chrIV 291531 . C T 4138.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.7901;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.19;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:4138,409,0 chrIV 291726 . T A 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=170;Dels=0.00;FS=3.792;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.143;QD=23.44;ReadPosRankSum=1.691;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3985,403,0 chrIV 292011 . T C 3998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-1.072;QD=23.80;ReadPosRankSum=1.711;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3998,397,0 chrIV 292017 . T G 3977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=171;Dels=0.00;FS=2.709;HaplotypeScore=7.2937;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-1.272;QD=23.26;ReadPosRankSum=2.391;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3977,409,0 chrIV 292402 . A G 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=144;Dels=0.02;FS=3.167;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;MQRankSum=-0.577;QD=23.93;ReadPosRankSum=1.683;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3446,355,0 chrIV 292428 . A G 3132 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=24.86;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3165,325,0 chrIV 292499 . G A 1501 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;QD=14.57;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1534,159,0 chrIV 292500 . G A 1508 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.33;MQ0=0;QD=14.93;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1541,156,0 chrIV 292505 . T G 1429 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.95;MQ0=0;QD=14.29;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1462,150,0 chrIV 292517 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=0;QD=14.81;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1588,156,0 chrIV 292555 . A G 1529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.10;MQ0=0;MQRankSum=-0.637;QD=13.07;ReadPosRankSum=1.703;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1562,159,0 chrIV 292574 . T A 1505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=3.237;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.32;MQ0=0;MQRankSum=-0.939;QD=12.75;ReadPosRankSum=1.703;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1538,150,0 chrIV 292582 . T C 1561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.391;DP=130;Dels=0.00;FS=9.179;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=0;MQRankSum=-0.425;QD=12.01;ReadPosRankSum=3.391;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:4,126:130:99:1594,162,0 chrIV 292597 . C T 2064 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.21;MQ0=0;QD=14.64;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2097,207,0 chrIV 292605 . G A 2174 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.39;MQ0=0;QD=15.20;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2207,219,0 chrIV 292611 . T C 2225 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.31;MQ0=0;QD=15.45;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2258,228,0 chrIV 292625 . T G 2236 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;QD=14.61;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2269,237,0 chrIV 292644 . C T 2772 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=16.70;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2805,280,0 chrIV 292751 . A G 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=128;Dels=0.00;FS=7.806;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-0.320;QD=24.09;ReadPosRankSum=2.333;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:3116,321,0 chrIV 292776 . A G 3284.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.4631;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;QD=23.97;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:3284,336,0 chrIV 293191 . A T 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.322;QD=23.35;ReadPosRankSum=1.701;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2672,279,0 chrIV 294427 . A G 4315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=182;Dels=0.00;FS=2.815;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.482;QD=23.71;ReadPosRankSum=2.382;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:4315,436,0 chrIV 294517 . T C 3719.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.10;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3719,388,0 chrIV 295157 . A G 3463.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.2472;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.64;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3463,360,0 chrIV 295338 . T C 5134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.857;QD=25.93;ReadPosRankSum=1.697;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:5134,523,0 chrIV 295469 . A G 3938.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.0737;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.87;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3938,406,0 chrIV 295928 . T C 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.136;DP=178;Dels=0.00;FS=12.797;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.908;QD=23.36;ReadPosRankSum=3.410;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:4,174:178:99:4158,433,0 chrIV 296009 . C T 6397.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=13.4364;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.51;SB=-3.793e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:6397,628,0 chrIV 296063 . G A 5550.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.03;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5550,553,0 chrIV 296527 . A G 5896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.513;QD=26.68;ReadPosRankSum=1.701;SB=-3.116e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:5896,607,0 chrIV 296567 . T C 5141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=197;Dels=0.00;FS=6.178;HaplotypeScore=14.2516;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.875;QD=26.10;ReadPosRankSum=2.424;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:2,193:197:99:5141,520,0 chrIV 296793 . A G 3909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=167;Dels=0.00;FS=6.083;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.564;QD=23.41;ReadPosRankSum=2.897;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:3,163:167:99:3909,391,0 chrIV 296817 . A G 3483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=153;Dels=0.00;FS=3.027;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.558;QD=22.76;ReadPosRankSum=2.385;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3483,363,0 chrIV 297184 . A G 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=3.829;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.452;QD=25.44;ReadPosRankSum=1.697;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2552,258,0 chrIV 297806 . T G 3600.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.00;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3600,381,0 chrIV 297848 . A G 3497.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.16;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3497,355,0 chrIV 297971 . T C 3091 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.62;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3124,321,0 chrIV 297975 . C A 3113 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.62;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3146,316,0 chrIV 298099 . A T 3647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=3.832;HaplotypeScore=6.4973;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-1.637;QD=25.15;ReadPosRankSum=1.660;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3647,370,0 chrIV 298148 . G A 2729 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.93;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2762,288,0 chrIV 298304 . G A 3704.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=119.3054;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=24.86;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3704,361,0 chrIV 298347 . A G 2740 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.02;FS=0.000;HaplotypeScore=29.6452;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.57;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2773,282,0 chrIV 298579 . T C 4839.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.4908;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.44;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4839,490,0 chrIV 298871 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.89;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3559,355,0 chrIV 299200 . C T 3797.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.66;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3797,391,0 chrIV 299385 . T A 3977.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.55;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3977,394,0 chrIV 299599 . C T 5820.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.58;SB=-3.144e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5820,577,0 chrIV 299792 . G A 7402.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=9.8928;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.79;SB=-3.548e+03 GT:AD:DP:GQ:PL 1/1:0,285:287:99:7402,730,0 chrIV 300204 . A T 3100 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=6.2415;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.66;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3133,316,0 chrIV 300254 . C T 4301.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=27.39;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4301,433,0 chrIV 300487 . T C 6084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.103;DP=257;Dels=0.00;FS=13.546;HaplotypeScore=29.8495;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.378;QD=23.67;ReadPosRankSum=4.181;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:6,249:257:99:6084,613,0 chrIV 300521 . C G 5711.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=8.2067;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=25.38;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,220:225:99:5711,568,0 chrIV 300736 . T C 6613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=273;Dels=0.00;FS=3.009;HaplotypeScore=27.4031;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=1.982;QD=24.22;ReadPosRankSum=2.432;SB=-3.599e+03 GT:AD:DP:GQ:PL 1/1:2,271:273:99:6613,685,0 chrIV 300807 . G A 7272.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=8.9300;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=23.31;SB=-3.951e+03 GT:AD:DP:GQ:PL 1/1:0,312:312:99:7272,712,0 chrIV 300814 . C T 6981.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=9.0758;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=22.45;SB=-4.180e+03 GT:AD:DP:GQ:PL 1/1:0,307:311:99:6981,688,0 chrIV 300880 . G A 4996.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.9260;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.71;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4996,496,0 chrIV 301033 . G A 4636.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=5.6310;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=19.90;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4636,489,0 chrIV 301039 . C T 4430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=225;Dels=0.00;FS=3.911;HaplotypeScore=7.2630;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;MQRankSum=-1.068;QD=19.69;ReadPosRankSum=-0.182;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:1,218:225:99:4430,448,0 chrIV 301246 . C T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.57;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3247,336,0 chrIV 301279 . C A 3834.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.24;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3834,382,0 chrIV 301751 . T C 5962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=292;Dels=0.00;FS=3.875;HaplotypeScore=25.2471;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.409;QD=20.42;ReadPosRankSum=1.720;SB=-3.205e+03 GT:AD:DP:GQ:PL 1/1:1,288:292:99:5962,613,0 chrIV 301845 . G A 5028.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.9807;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.41;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5028,496,0 chrIV 302207 . C T 3327.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.6972;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=22.94;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3327,348,0 chrIV 302250 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.41;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3532,375,0 chrIV 302259 . T C 3453.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=22.13;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3453,358,0 chrIV 302423 . C A 2363 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.9914;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=25.97;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2396,237,0 chrIV 302581 . A G 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=3.795;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=1.431;QD=25.59;ReadPosRankSum=1.702;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:3001,304,0 chrIV 302711 . G T 4413.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=22.63;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4413,433,0 chrIV 302719 . T C 4364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=199;Dels=0.00;FS=3.593;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.879;QD=21.93;ReadPosRankSum=1.697;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4364,442,0 chrIV 302749 . C T 4143.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.3793;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.69;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4143,424,0 chrIV 302868 . G T 2920 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.13;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2953,292,0 chrIV 302927 . C A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=26.03;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3853,379,0 chrIV 303051 . C A 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=170;Dels=0.00;FS=5.626;HaplotypeScore=19.4810;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.928;QD=21.79;ReadPosRankSum=1.670;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3705,361,0 chrIV 303361 . A G 4222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.188;DP=182;Dels=0.00;FS=9.165;HaplotypeScore=19.0511;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.286;QD=23.20;ReadPosRankSum=3.411;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:4,177:182:99:4222,433,0 chrIV 303471 . A G 4269.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=174;Dels=0.00;FS=3.111;HaplotypeScore=13.2570;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.633;QD=24.53;ReadPosRankSum=1.692;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4269,436,0 chrIV 304248 . C T 4159.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4159,433,0 chrIV 304677 . C T 5808.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5808,583,0 chrIV 305375 . A G 3832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=177;Dels=0.00;FS=4.080;HaplotypeScore=21.3754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.338;QD=21.65;ReadPosRankSum=1.712;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:3832,402,0 chrIV 305599 . G T 6035.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=15.1584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:6035,598,0 chrIV 307571 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.77;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2838,288,0 chrIV 307685 . G A 3027 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.1605;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.83;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3060,298,0 chrIV 307984 . T C 4051.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=24.55;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4051,415,0 chrIV 308096 . C T 3836.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.83;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3836,394,0 chrIV 308170 . A G 3935.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;MQRankSum=-0.020;QD=22.88;ReadPosRankSum=1.692;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3935,400,0 chrIV 308173 . C T 1527 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;MQRankSum=0.501;QD=9.14;ReadPosRankSum=1.607;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:1560,197,0 chrIV 308174 . T C 1520 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.7303;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;MQRankSum=0.220;QD=9.21;ReadPosRankSum=1.648;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:1553,197,0 chrIV 308238 . A G 2185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.732;DP=125;Dels=0.00;FS=5.791;HaplotypeScore=8.0182;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;MQRankSum=-0.585;QD=17.48;ReadPosRankSum=2.911;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2218,228,0 chrIV 308241 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=18.89;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2186,225,0 chrIV 308457 . C T 2791 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=23.85;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2824,277,0 chrIV 308552 . G A 3513.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0093;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.57;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3513,361,0 chrIV 308657 . C T 2357 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.62;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2390,252,0 chrIV 308658 . T G 2339 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.46;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2372,252,0 chrIV 308700 . G A 2335 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.85;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2368,234,0 chrIV 308773 . T C 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=133;Dels=0.00;FS=2.822;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.425;QD=24.11;ReadPosRankSum=2.412;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3240,334,0 chrIV 308968 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.96;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3196,316,0 chrIV 309554 . G T 975 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=25.66;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1008,105,0 chrIV 309607 . T C 525 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=69.5886;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=16.94;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:57:558,57,0 chrIV 309630 . G A 760 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;QD=19.49;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:78:793,78,0 chrIV 309716 . T A 884 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:917,93,0 chrIV 310132 . T C 2211 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2244,222,0 chrIV 310329 . A T 1493 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.66;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1526,150,0 chrIV 310698 . T C 2370 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=25.48;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2403,252,0 chrIV 311231 . T C 4414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.630;QD=24.39;ReadPosRankSum=1.673;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:1,175:181:99:4414,451,0 chrIV 311442 . T G 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=170;Dels=0.00;FS=4.098;HaplotypeScore=16.7859;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.156;QD=23.24;ReadPosRankSum=1.711;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,166:170:99:3950,400,0 chrIV 311602 . G A 4414.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.1230;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4414,442,0 chrIV 312250 . T C 6713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.047;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=22.0922;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.076;QD=21.87;ReadPosRankSum=1.734;SB=-3.069e+03 GT:AD:DP:GQ:PL 1/1:2,304:307:99:6713,673,0 chrIV 312431 . C T 3829.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3829,402,0 chrIV 312488 . G A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.26;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3695,367,0 chrIV 312611 . C T 5661.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.9481;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=27.75;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5661,547,0 chrIV 313108 . G A 4455.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.3804;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.89;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4455,442,0 chrIV 314015 . T C 2263 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.68;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2296,246,0 chrIV 316924 . T A 1474 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.16;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1507,150,0 chrIV 320548 . T C 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=126;Dels=0.00;FS=3.774;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.894;QD=23.98;ReadPosRankSum=1.564;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:3055,312,0 chrIV 321142 . A G 4236.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.1208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.99;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4236,433,0 chrIV 324892 . C T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.1161;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.82;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3798,379,0 chrIV 325079 . C A 3680.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.29;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3680,379,0 chrIV 325302 . T C 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=4.079;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-1.417;QD=19.45;ReadPosRankSum=1.449;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2173,222,0 chrIV 325322 . G A 2488 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=20.56;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2521,249,0 chrIV 325335 . G A 2268 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=18.74;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2301,231,0 chrIV 325444 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.1248;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.14;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2949,312,0 chrIV 326189 . G A 3014 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=13.4169;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.18;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3047,304,0 chrIV 326534 . A C 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.1382;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.903;QD=23.66;ReadPosRankSum=2.218;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4022,406,0 chrIV 327242 . G A 2088 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.45;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2121,210,0 chrIV 327540 . G A 2913 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.48;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2946,294,0 chrIV 328957 . A C 3282.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.25;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3282,331,0 chrIV 329690 . G A 119.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.88;SB=-3.701e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:152,15,0 chrIV 330288 . C T 5090.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.12;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5090,526,0 chrIV 334393 . T C 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.5961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.332;QD=25.65;ReadPosRankSum=2.378;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3514,358,0 chrIV 336884 . C G 4082.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.6025;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.74;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4082,406,0 chrIV 336943 . T C 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.283;QD=22.62;ReadPosRankSum=1.713;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4229,439,0 chrIV 338482 . C G 3531.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.52;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3531,366,0 chrIV 339391 . A G 3701.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.42;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3701,385,0 chrIV 340555 . G T 2661 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=28.01;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2694,270,0 chrIV 340945 . A T 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=5.543;HaplotypeScore=8.2592;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.168;QD=24.33;ReadPosRankSum=1.571;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3196,319,0 chrIV 341953 . G A 4332.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.7421;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.94;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4332,433,0 chrIV 344289 . C T 3034 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.1969;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.87;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3067,307,0 chrIV 344847 . T C 5780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=254;Dels=0.00;FS=2.908;HaplotypeScore=22.7579;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.258;QD=22.76;ReadPosRankSum=2.372;SB=-3.092e+03 GT:AD:DP:GQ:PL 1/1:2,251:254:99:5780,592,0 chrIV 345134 . T C 6937.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.89;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,302:303:99:6937,709,0 chrIV 346745 . G A 5093.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.09;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:5093,502,0 chrIV 347152 . A G 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=157;Dels=0.00;FS=3.029;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.618;QD=25.46;ReadPosRankSum=2.403;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3997,403,0 chrIV 349096 . T A 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.419;QD=22.32;ReadPosRankSum=1.710;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3459,340,0 chrIV 353410 . T C 4657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.7202;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.272;QD=25.87;ReadPosRankSum=1.654;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:4657,475,0 chrIV 353682 . T G 5274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=15.9583;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.577;QD=26.24;ReadPosRankSum=1.715;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:5274,532,0 chrIV 354787 . T C 5048.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=1;QD=24.87;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5048,511,0 chrIV 354835 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.040;DP=157;Dels=0.00;FS=2.857;HaplotypeScore=14.8822;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.016;QD=21.83;ReadPosRankSum=2.418;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3427,360,0 chrIV 354950 . T C 3936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=157;Dels=0.00;FS=6.509;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.449;QD=25.07;ReadPosRankSum=2.402;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3936,397,0 chrIV 356492 . A G 8787.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=17.0274;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.18;SB=-4.826e+03 GT:AD:DP:GQ:PL 1/1:0,348:349:99:8787,881,0 chrIV 356541 . A G 7185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=295;Dels=0.00;FS=2.910;HaplotypeScore=10.3272;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.264;QD=24.36;ReadPosRankSum=2.408;SB=-3.554e+03 GT:AD:DP:GQ:PL 1/1:2,292:295:99:7185,745,0 chrIV 356853 . G A 3286.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8191;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.52;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,130:134:99:3286,328,0 chrIV 357312 . T C 6106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=14.5088;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.067;QD=23.48;ReadPosRankSum=1.665;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,259:260:99:6106,628,0 chrIV 358299 . T C 4734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=229;Dels=0.00;FS=3.428;HaplotypeScore=15.9003;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.053;QD=20.67;ReadPosRankSum=1.656;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:4734,481,0 chrIV 359279 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=158;Dels=0.00;FS=3.680;HaplotypeScore=11.2502;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.517;QD=23.87;ReadPosRankSum=1.710;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,153:158:99:3772,391,0 chrIV 359505 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.92;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3421,340,0 chrIV 361672 . G A 4115.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=27.80;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,146:148:99:4115,415,0 chrIV 361711 . T C 3067 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.38;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:3100,321,0 chrIV 361844 . A G 4509.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4509,466,0 chrIV 361942 . A G 5585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=234;Dels=0.00;FS=8.588;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.301;QD=23.87;ReadPosRankSum=2.407;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:2,231:234:99:5585,577,0 chrIV 362834 . G A 3935.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.1832;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.06;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3935,409,0 chrIV 362993 . T C 4793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=182;Dels=0.00;FS=2.673;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.617;QD=26.34;ReadPosRankSum=2.409;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:4793,493,0 chrIV 363194 . C A 7175.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=11.9237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.38;SB=-3.520e+03 GT:AD:DP:GQ:PL 1/1:0,267:272:99:7175,715,0 chrIV 363251 . G T 7808.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=33.2168;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.68;SB=-3.282e+03 GT:AD:DP:GQ:PL 1/1:0,299:304:99:7808,775,0 chrIV 363511 . A G 5748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.666;DP=242;Dels=0.00;FS=7.757;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.989;QD=23.75;ReadPosRankSum=3.815;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:5,236:242:99:5748,577,0 chrIV 363624 . A G 4764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.8580;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.340;QD=23.35;ReadPosRankSum=1.715;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4764,493,0 chrIV 364706 . A T 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.6520;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.517;QD=24.31;ReadPosRankSum=1.710;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3743,379,0 chrIV 364908 . T C 1430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=73;Dels=0.00;FS=7.782;HaplotypeScore=4.9084;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.107;QD=19.59;ReadPosRankSum=1.684;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1463,153,0 chrIV 366105 . C T 4584.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=17.4654;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.50;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4584,454,0 chrIV 366354 . C A 3113 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.24;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3146,316,0 chrIV 366464 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.02;FS=0.000;HaplotypeScore=21.7731;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.18;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3964,412,0 chrIV 366543 . C T 2873 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.8749;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.44;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2906,289,0 chrIV 366862 . C T 4042.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.97;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4042,415,0 chrIV 366968 . C A 4629.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.8360;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.36;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4629,486,0 chrIV 367213 . T C 6512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=270;Dels=0.00;FS=3.009;HaplotypeScore=18.1082;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.196;QD=24.12;ReadPosRankSum=2.395;SB=-3.477e+03 GT:AD:DP:GQ:PL 1/1:2,268:270:99:6512,664,0 chrIV 367564 . G C 5414.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=22.2308;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.57;SB=-3.099e+03 GT:AD:DP:GQ:PL 1/1:0,247:251:99:5414,571,0 chrIV 367618 . G A 7420.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=20.0759;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.12;SB=-3.681e+03 GT:AD:DP:GQ:PL 1/1:0,319:321:99:7420,730,0 chrIV 367885 . G A 6701.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=22.8304;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.02;SB=-3.744e+03 GT:AD:DP:GQ:PL 1/1:0,277:279:99:6701,697,0 chrIV 368038 . G A 6215.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.12;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:6215,643,0 chrIV 368052 . G A 5833.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.35;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5833,577,0 chrIV 368207 . A G 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.409;QD=24.12;ReadPosRankSum=1.711;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3884,400,0 chrIV 368337 . T C 1584 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.00;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1617,168,0 chrIV 368345 . C T 1400 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.59;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1433,144,0 chrIV 368534 . T A 2788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.5711;MLEAC=2;MLEAF=1.00;MQ=60.38;MQ0=0;MQRankSum=-0.405;QD=26.06;ReadPosRankSum=1.408;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2821,277,0 chrIV 368620 . G C 2758 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.6141;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=26.52;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2791,288,0 chrIV 368735 . G A 2728 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=21.15;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2761,276,0 chrIV 369340 . G A 2144 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=29.78;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2177,216,0 chrIV 369366 . C A 2298 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=27.36;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2331,234,0 chrIV 369534 . G C 4392.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.2055;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.53;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4392,445,0 chrIV 369744 . A G 4526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=184;Dels=0.00;FS=2.972;HaplotypeScore=16.8422;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.327;QD=24.60;ReadPosRankSum=2.396;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4526,466,0 chrIV 369971 . G T 4321.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.51;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4321,433,0 chrIV 370148 . C T 4594.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4594,463,0 chrIV 370499 . G A 5084.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.9095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.68;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5084,496,0 chrIV 370634 . G C 3401.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6747;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.29;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3401,357,0 chrIV 370771 . A G 1189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.700;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.254;QD=18.58;ReadPosRankSum=2.732;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:99:1222,129,0 chrIV 370914 . T C 404 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.24;SB=-6.785e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:45:437,45,0 chrIV 371085 . T C 2469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.279;QD=26.27;ReadPosRankSum=1.658;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2502,258,0 chrIV 371142 . A G 1880 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.1100;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=26.48;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1913,198,0 chrIV 371204 . T C 2136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;MQRankSum=-1.461;QD=18.41;ReadPosRankSum=2.887;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2169,228,0 chrIV 371211 . T C 2218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=0.124;QD=17.19;ReadPosRankSum=2.335;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2251,234,0 chrIV 371249 . A G 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=4.973;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;MQRankSum=-0.256;QD=17.12;ReadPosRankSum=1.673;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3047,318,0 chrIV 371263 . A G 2789 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=14.38;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:2822,294,0 chrIV 371266 . C T 3030 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=14.43;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:3063,315,0 chrIV 371308 . G A 4210.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=18.46;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4210,450,0 chrIV 371437 . T C 5115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=214;Dels=0.00;FS=3.486;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=-1.242;QD=23.90;ReadPosRankSum=1.683;SB=-2.743e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:5115,517,0 chrIV 371461 . T C 5217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=224;Dels=0.00;FS=4.107;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=-1.144;QD=23.29;ReadPosRankSum=1.655;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:5217,541,0 chrIV 371620 . G A 6111.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=21.4099;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.15;SB=-3.194e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:6111,616,0 chrIV 371665 . T C 4796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.9760;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.565;QD=26.35;ReadPosRankSum=1.713;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4796,502,0 chrIV 371744 . A G 4066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.364;QD=22.59;ReadPosRankSum=1.713;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4066,421,0 chrIV 371798 . C A 3888.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.1269;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.72;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:3888,397,0 chrIV 371854 . G T 5120.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.3065;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.59;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:5120,508,0 chrIV 371907 . C T 4633.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.2665;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.04;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4633,454,0 chrIV 372564 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.201;QD=23.79;ReadPosRankSum=2.936;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:3,138:141:99:3355,342,0 chrIV 372726 . C T 4909.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.6388;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4909,499,0 chrIV 373723 . T C 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=3.188;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.649;QD=26.22;ReadPosRankSum=1.704;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3278,331,0 chrIV 379373 . G A 4576.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.47;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4576,457,0 chrIV 380035 . G A 5754.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.3179;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.57;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5754,583,0 chrIV 380086 . A G 4371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=184;Dels=0.00;FS=4.027;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.609;QD=23.76;ReadPosRankSum=1.599;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:4371,454,0 chrIV 380160 . T C 4966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=222;Dels=0.00;FS=9.425;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.283;QD=22.37;ReadPosRankSum=2.427;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:2,219:222:99:4966,511,0 chrIV 380208 . G T 5518.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=17.2470;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.99;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5518,556,0 chrIV 381275 . T C 4479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.603;QD=24.75;ReadPosRankSum=1.656;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4479,451,0 chrIV 381403 . T C 5016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.185;QD=24.23;ReadPosRankSum=1.665;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:5016,520,0 chrIV 381770 . C T 2381 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2414,237,0 chrIV 382325 . G A 8187.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=20.6490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-4.339e+03 GT:AD:DP:GQ:PL 1/1:0,315:318:99:8187,806,0 chrIV 382830 . C T 4844.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.6954;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.96;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4844,481,0 chrIV 382835 . G A 4675.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=22.37;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4675,469,0 chrIV 383065 . G A 6804.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=11.8649;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=25.11;SB=-3.626e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:6804,700,0 chrIV 383227 . C T 6262.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=6.3031;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=22.94;SB=-3.311e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:6262,628,0 chrIV 383229 . C T 6453.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=5.5144;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=23.13;SB=-3.361e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:99:6453,628,0 chrIV 383816 . A G 314.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.117;DP=491;Dels=0.00;FS=367.294;HaplotypeScore=291.4292;MLEAC=1;MLEAF=0.500;MQ=39.65;MQ0=0;MQRankSum=-12.329;QD=0.64;ReadPosRankSum=2.904;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:288,201:491:99:344,0,6458 chrIV 383827 . C T 430.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.399;DP=468;Dels=0.00;FS=352.607;HaplotypeScore=340.6197;MLEAC=1;MLEAF=0.500;MQ=40.66;MQ0=0;MQRankSum=-13.238;QD=0.92;ReadPosRankSum=4.851;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:278,190:468:99:460,0,5842 chrIV 383844 . T C 406.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.810;DP=448;Dels=0.00;FS=321.841;HaplotypeScore=260.6107;MLEAC=1;MLEAF=0.500;MQ=41.96;MQ0=0;MQRankSum=-11.320;QD=0.91;ReadPosRankSum=-2.627;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:276,172:448:99:436,0,6103 chrIV 383861 . G A 354.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.342;DP=392;Dels=0.00;FS=239.456;HaplotypeScore=111.6764;MLEAC=1;MLEAF=0.500;MQ=43.80;MQ0=0;MQRankSum=-11.803;QD=0.90;ReadPosRankSum=-12.647;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:255,137:392:99:384,0,5462 chrIV 383912 . C T 118.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.321;DP=655;Dels=0.00;FS=176.528;HaplotypeScore=484.7978;MLEAC=1;MLEAF=0.500;MQ=33.62;MQ0=1;MQRankSum=-8.115;QD=0.18;ReadPosRankSum=-12.108;SB=-1.210e+03 GT:AD:DP:GQ:PL 0/1:241,414:655:99:148,0,3963 chrIV 383923 . G A 148.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.190;DP=720;Dels=0.00;FS=7.557;HaplotypeScore=325.0797;MLEAC=1;MLEAF=0.500;MQ=31.70;MQ0=2;MQRankSum=-5.516;QD=0.21;ReadPosRankSum=-4.339;SB=-1.618e+03 GT:AD:DP:GQ:PL 0/1:386,334:720:99:178,0,3646 chrIV 383938 . G A 3294.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.004;DP=817;Dels=0.00;FS=5.616;HaplotypeScore=913.4231;MLEAC=1;MLEAF=0.500;MQ=28.93;MQ0=2;MQRankSum=5.677;QD=4.03;ReadPosRankSum=-1.697;SB=-2.778e+03 GT:AD:DP:GQ:PL 0/1:383,428:817:99:3294,0,245 chrIV 383946 . A G 282.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.208;DP=751;Dels=0.00;FS=537.700;HaplotypeScore=864.7130;MLEAC=1;MLEAF=0.500;MQ=27.91;MQ0=2;MQRankSum=4.437;QD=0.38;ReadPosRankSum=-6.677;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:472,274:750:99:312,0,753 chrIV 383957 . G C 1993.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.310;DP=873;Dels=0.01;FS=87.766;HaplotypeScore=749.4025;MLEAC=1;MLEAF=0.500;MQ=27.92;MQ0=2;MQRankSum=4.348;QD=2.28;ReadPosRankSum=1.642;SB=-2.598e+03 GT:AD:DP:GQ:PL 0/1:603,260:865:99:2023,0,2150 chrIV 383965 . G A 1903.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.741;DP=685;Dels=0.04;FS=1.625;HaplotypeScore=847.5764;MLEAC=1;MLEAF=0.500;MQ=27.72;MQ0=1;MQRankSum=6.057;QD=2.78;ReadPosRankSum=0.744;SB=-2.590e+03 GT:AD:DP:GQ:PL 0/1:365,289:656:99:1933,0,2642 chrIV 383968 . T G 1644.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.007;DP=686;Dels=0.05;FS=39.753;HaplotypeScore=874.6282;MLEAC=1;MLEAF=0.500;MQ=27.72;MQ0=1;MQRankSum=8.821;QD=2.40;ReadPosRankSum=0.731;SB=-1.878e+03 GT:AD:DP:GQ:PL 0/1:280,192:655:99:1674,0,2664 chrIV 383985 . T C 630.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;DP=642;Dels=0.01;FS=36.661;HaplotypeScore=689.2495;MLEAC=1;MLEAF=0.500;MQ=27.85;MQ0=1;MQRankSum=9.366;QD=0.98;ReadPosRankSum=-0.301;SB=-1.672e+03 GT:AD:DP:GQ:PL 0/1:458,175:633:99:660,0,5110 chrIV 384021 . C T 840.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.502;DP=747;Dels=0.00;FS=54.587;HaplotypeScore=194.4234;MLEAC=1;MLEAF=0.500;MQ=31.33;MQ0=0;MQRankSum=4.491;QD=1.12;ReadPosRankSum=-3.427;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:598,147:747:99:870,0,10234 chrIV 384035 . A G 967.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.191;DP=846;Dels=0.00;FS=9.854;HaplotypeScore=134.7282;MLEAC=1;MLEAF=0.500;MQ=33.12;MQ0=0;MQRankSum=1.242;QD=1.14;ReadPosRankSum=-4.792;SB=-1.171e+03 GT:AD:DP:GQ:PL 0/1:650,195:846:99:997,0,13703 chrIV 384094 . T A 1415.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.472;DP=1000;DS;Dels=0.00;FS=12.831;HaplotypeScore=63.1993;MLEAC=1;MLEAF=0.500;MQ=35.17;MQ0=0;MQRankSum=-3.833;QD=1.42;ReadPosRankSum=-3.365;SB=-4.340e+02 GT:AD:DP:GQ:PL 0/1:828,172:1000:99:1445,0,17269 chrIV 384183 . C G 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.975;DP=540;DS;Dels=0.00;FS=75.034;HaplotypeScore=181.1336;MLEAC=1;MLEAF=0.500;MQ=32.15;MQ0=0;MQRankSum=-1.413;QD=0.02;ReadPosRankSum=-3.218;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:478,54:540:43:43,0,9227 chrIV 384189 . G A 4264.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.997;DP=503;DS;Dels=0.00;FS=1.902;HaplotypeScore=218.3011;MLEAC=1;MLEAF=0.500;MQ=32.84;MQ0=0;MQRankSum=-6.240;QD=8.48;ReadPosRankSum=-1.104;SB=-2.004e+03 GT:AD:DP:GQ:PL 0/1:189,313:503:99:4264,0,3384 chrIV 384191 . C G 9532.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=480;Dels=0.00;FS=0.000;HaplotypeScore=200.4870;MLEAC=2;MLEAF=1.00;MQ=32.81;MQ0=0;QD=19.86;SB=-5.003e+03 GT:AD:DP:GQ:PL 1/1:0,473:480:99:9532,1026,0 chrIV 384196 . T C 307.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;DP=486;Dels=0.00;FS=214.262;HaplotypeScore=285.9349;MLEAC=1;MLEAF=0.500;MQ=32.31;MQ0=0;MQRankSum=-4.417;QD=0.63;ReadPosRankSum=0.791;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:388,98:486:99:337,0,8161 chrIV 384202 . G A 423.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.068;DP=458;Dels=0.00;FS=184.020;HaplotypeScore=218.9986;MLEAC=1;MLEAF=0.500;MQ=32.62;MQ0=0;MQRankSum=-2.581;QD=0.92;ReadPosRankSum=1.628;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:356,102:458:99:453,0,7510 chrIV 384204 . C T 4023.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.823;DP=451;Dels=0.00;FS=9.845;HaplotypeScore=222.4137;MLEAC=1;MLEAF=0.500;MQ=33.07;MQ0=0;MQRankSum=-7.225;QD=8.92;ReadPosRankSum=-3.101;SB=-2.320e+03 GT:AD:DP:GQ:PL 0/1:193,257:451:99:4023,0,3710 chrIV 384215 . G A 568.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.576;DP=426;Dels=0.00;FS=256.661;HaplotypeScore=331.6837;MLEAC=1;MLEAF=0.500;MQ=35.61;MQ0=0;MQRankSum=-2.825;QD=1.33;ReadPosRankSum=5.365;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:328,96:426:99:598,0,6129 chrIV 384216 . A T 460.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.874;DP=426;Dels=0.00;FS=189.763;HaplotypeScore=327.1028;MLEAC=1;MLEAF=0.500;MQ=35.97;MQ0=0;MQRankSum=-3.560;QD=1.08;ReadPosRankSum=4.403;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:308,99:426:99:490,0,6449 chrIV 384219 . C T 77.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;DP=424;Dels=0.00;FS=23.446;HaplotypeScore=450.0646;MLEAC=1;MLEAF=0.500;MQ=36.25;MQ0=0;MQRankSum=-5.468;QD=0.18;ReadPosRankSum=-7.704;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:359,61:424:99:107,0,6128 chrIV 384224 . G T 625.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.684;DP=416;Dels=0.00;FS=234.282;HaplotypeScore=364.0305;MLEAC=1;MLEAF=0.500;MQ=37.32;MQ0=0;MQRankSum=-4.036;QD=1.50;ReadPosRankSum=3.842;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:322,94:416:99:655,0,5491 chrIV 384225 . G A 139.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.766;DP=414;Dels=0.00;FS=0.000;HaplotypeScore=369.4352;MLEAC=1;MLEAF=0.500;MQ=37.66;MQ0=0;MQRankSum=-5.039;QD=0.34;ReadPosRankSum=-10.818;SB=-5.920e+02 GT:AD:DP:GQ:PL 0/1:301,111:414:99:169,0,6003 chrIV 384235 . G A 546.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.662;DP=361;Dels=0.02;FS=122.682;HaplotypeScore=297.7545;MLEAC=1;MLEAF=0.500;MQ=40.87;MQ0=0;MQRankSum=-5.816;QD=1.51;ReadPosRankSum=-6.800;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:262,90:353:99:576,0,5001 chrIV 384237 . T A 541.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.961;DP=360;Dels=0.00;FS=211.523;HaplotypeScore=239.1355;MLEAC=1;MLEAF=0.500;MQ=41.29;MQ0=0;MQRankSum=-7.286;QD=1.50;ReadPosRankSum=-7.944;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:206,79:360:99:571,0,4357 chrIV 384240 . T C 967.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.582;DP=381;Dels=0.00;FS=72.803;HaplotypeScore=282.2292;MLEAC=1;MLEAF=0.500;MQ=41.97;MQ0=0;MQRankSum=-8.316;QD=2.54;ReadPosRankSum=-7.113;SB=-5.340e+02 GT:AD:DP:GQ:PL 0/1:237,143:381:99:997,0,4823 chrIV 384244 . A T 239.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.290;DP=453;Dels=0.00;FS=160.524;HaplotypeScore=404.4756;MLEAC=1;MLEAF=0.500;MQ=41.18;MQ0=0;MQRankSum=-7.418;QD=0.53;ReadPosRankSum=-6.491;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:365,72:453:99:269,0,5797 chrIV 384256 . A G 755.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.061;DP=429;Dels=0.00;FS=108.950;HaplotypeScore=254.4682;MLEAC=1;MLEAF=0.500;MQ=44.89;MQ0=0;MQRankSum=-7.590;QD=1.76;ReadPosRankSum=-2.176;SB=-7.510e+02 GT:AD:DP:GQ:PL 0/1:243,181:429:99:785,0,5006 chrIV 384257 . T C 7118.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.854;DP=432;Dels=0.00;FS=114.148;HaplotypeScore=259.4063;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;MQRankSum=2.338;QD=16.48;ReadPosRankSum=4.056;SB=-4.032e+03 GT:AD:DP:GQ:PL 1/1:32,398:432:99:7118,708,0 chrIV 384317 . C G 460.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;DP=602;Dels=0.00;FS=211.935;HaplotypeScore=496.0375;MLEAC=1;MLEAF=0.500;MQ=44.48;MQ0=0;MQRankSum=-13.698;QD=0.76;ReadPosRankSum=-12.309;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:357,190:602:99:490,0,7412 chrIV 384335 . G C 97.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.737;DP=652;Dels=0.00;FS=259.327;HaplotypeScore=607.9065;MLEAC=1;MLEAF=0.500;MQ=42.66;MQ0=0;MQRankSum=-12.538;QD=0.15;ReadPosRankSum=-1.979;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:440,144:652:99:127,0,8794 chrIV 384347 . G A 2106.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.974;DP=680;Dels=0.00;FS=61.796;HaplotypeScore=661.9318;MLEAC=1;MLEAF=0.500;MQ=40.10;MQ0=1;MQRankSum=-8.189;QD=3.10;ReadPosRankSum=-5.606;SB=-3.290e+02 GT:AD:DP:GQ:PL 0/1:471,209:680:99:2136,0,6967 chrIV 384352 . A G 455.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.306;DP=674;Dels=0.00;FS=223.621;HaplotypeScore=715.4912;MLEAC=1;MLEAF=0.500;MQ=39.05;MQ0=1;MQRankSum=-11.355;QD=0.68;ReadPosRankSum=-2.291;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:459,158:674:99:485,0,8467 chrIV 384370 . G A 2045.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.083;DP=580;Dels=0.03;FS=183.125;HaplotypeScore=1034.9483;MLEAC=1;MLEAF=0.500;MQ=37.64;MQ0=1;MQRankSum=-10.187;QD=3.53;ReadPosRankSum=-5.562;SB=-4.510e+02 GT:AD:DP:GQ:PL 0/1:245,319:564:99:2075,0,4816 chrIV 384379 . G A 1148.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.041;DP=523;Dels=0.00;FS=130.580;HaplotypeScore=1204.7131;MLEAC=1;MLEAF=0.500;MQ=38.64;MQ0=1;MQRankSum=-7.470;QD=2.20;ReadPosRankSum=-6.483;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:357,165:523:99:1178,0,4633 chrIV 384383 . G A 591.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.218;DP=522;Dels=0.00;FS=79.459;HaplotypeScore=1071.2784;MLEAC=1;MLEAF=0.500;MQ=38.84;MQ0=1;MQRankSum=-8.569;QD=1.13;ReadPosRankSum=-8.493;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:398,121:522:99:621,0,4865 chrIV 384389 . G C 687.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.209;DP=519;Dels=0.00;FS=169.787;HaplotypeScore=399.4117;MLEAC=1;MLEAF=0.500;MQ=39.06;MQ0=0;MQRankSum=-5.103;QD=1.32;ReadPosRankSum=-0.964;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:414,103:518:99:717,0,6031 chrIV 384401 . A G 1646.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.081;DP=475;Dels=0.00;FS=39.816;HaplotypeScore=122.1017;MLEAC=1;MLEAF=0.500;MQ=41.04;MQ0=0;MQRankSum=1.495;QD=3.47;ReadPosRankSum=4.503;SB=-5.820e+02 GT:AD:DP:GQ:PL 0/1:367,102:474:99:1676,0,5577 chrIV 384415 . A G 3009.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.073;DP=364;Dels=0.00;FS=1.768;HaplotypeScore=48.1168;MLEAC=1;MLEAF=0.500;MQ=44.50;MQ0=0;MQRankSum=-5.817;QD=8.27;ReadPosRankSum=-2.172;SB=-1.473e+03 GT:AD:DP:GQ:PL 0/1:207,154:364:99:3039,0,2908 chrIV 384496 . G A 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.019;DP=385;Dels=0.00;FS=94.663;HaplotypeScore=87.8329;MLEAC=1;MLEAF=0.500;MQ=50.88;MQ0=0;MQRankSum=-9.673;QD=0.07;ReadPosRankSum=-2.488;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:323,58:385:57:57,0,6817 chrIV 384504 . G A 346.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458;DP=388;Dels=0.00;FS=32.437;HaplotypeScore=61.7411;MLEAC=1;MLEAF=0.500;MQ=50.32;MQ0=0;MQRankSum=-9.499;QD=0.89;ReadPosRankSum=-5.778;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:318,68:388:99:376,0,6601 chrIV 384602 . T G 5526.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=2.4653;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=21.93;SB=-3.153e+03 GT:AD:DP:GQ:PL 1/1:0,249:252:99:5526,568,0 chrIV 384607 . G A 5374.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=21.24;SB=-3.312e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5374,556,0 chrIV 385035 . T A 848.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.038;DP=274;Dels=0.00;FS=0.593;HaplotypeScore=18.8003;MLEAC=1;MLEAF=0.500;MQ=51.65;MQ0=15;MQRankSum=8.065;QD=3.09;ReadPosRankSum=-7.415;SB=-2.850e+02 GT:AD:DP:GQ:PL 0/1:217,56:274:99:878,0,3675 chrIV 385079 . A G 4526.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.105;DP=224;Dels=0.00;FS=10.789;HaplotypeScore=6.0387;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=4;MQRankSum=-0.535;QD=20.21;ReadPosRankSum=4.053;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:6,216:224:99:4526,460,0 chrIV 385094 . A G 5589.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=4.4809;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.91;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5589,568,0 chrIV 385473 . T C 5056.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.1772;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.98;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5056,517,0 chrIV 385750 . T C 3378.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7598;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.52;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3378,351,0 chrIV 385972 . C T 1341 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.03;FS=0.000;HaplotypeScore=13.4157;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=16.97;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1374,141,0 chrIV 386657 . G A 2753 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.73;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2786,274,0 chrIV 388147 . T C 2995 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3028,304,0 chrIV 388221 . G T 4681.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.1286;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.64;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4681,478,0 chrIV 388305 . A T 3124 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.67;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3157,330,0 chrIV 388440 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.103;QD=22.52;ReadPosRankSum=1.594;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3445,355,0 chrIV 389086 . A T 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=154;Dels=0.00;FS=3.882;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.282;QD=24.91;ReadPosRankSum=1.642;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3836,385,0 chrIV 391244 . T C 3166 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.1283;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.53;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3199,330,0 chrIV 392128 . C G 1634 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.8379;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=12.57;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1667,180,0 chrIV 392938 . C A 5223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=207;Dels=0.00;FS=3.454;HaplotypeScore=11.4045;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.538;QD=25.23;ReadPosRankSum=0.404;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:5223,520,0 chrIV 393923 . C A 3804.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.70;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3804,370,0 chrIV 394178 . T C 7184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.105;DP=281;Dels=0.00;FS=4.650;HaplotypeScore=17.6281;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.461;QD=25.57;ReadPosRankSum=4.136;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:6,274:281:99:7184,733,0 chrIV 394365 . C T 8167.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=18.2254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.78;SB=-4.289e+03 GT:AD:DP:GQ:PL 1/1:0,303:305:99:8167,794,0 chrIV 395767 . A T 3877.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.9989;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.34;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3877,391,0 chrIV 395873 . A G 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.051;DP=157;Dels=0.00;FS=3.032;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.343;QD=23.75;ReadPosRankSum=0.343;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:2,152:157:99:3729,360,0 chrIV 396610 . C A 3696.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.78;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3696,367,0 chrIV 397927 . G A 2802 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.35;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2835,291,0 chrIV 398523 . T G 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.951;QD=25.94;ReadPosRankSum=1.708;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3683,367,0 chrIV 398799 . T C 5064.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.1506;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5064,514,0 chrIV 400709 . T A 598 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=17.09;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:63:631,63,0 chrIV 400823 . A G 282 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.679e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:33:315,33,0 chrIV 400864 . A G 85.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.22;SB=-5.755e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:118,12,0 chrIV 402371 . A G 2552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=110;Dels=0.00;FS=6.552;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.644;QD=23.20;ReadPosRankSum=2.405;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2585,270,0 chrIV 404459 . A T 3035 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.99;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3068,307,0 chrIV 404981 . T C 2436 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2469,258,0 chrIV 406099 . C T 4512.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4512,448,0 chrIV 407064 . C T 3044 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.5529;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.60;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3077,301,0 chrIV 408416 . T A 4376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.195;DP=172;Dels=0.00;FS=5.258;HaplotypeScore=14.4071;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.249;QD=25.44;ReadPosRankSum=3.409;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:4,168:172:99:4376,430,0 chrIV 409988 . A G 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.052;QD=22.56;ReadPosRankSum=1.680;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:3056,315,0 chrIV 410598 . A G 4684.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.5147;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.90;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4684,475,0 chrIV 411643 . C G 3121 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.3214;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.97;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3154,319,0 chrIV 414243 . T C 4390.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.93;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4390,457,0 chrIV 414546 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=7.4711;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3207,330,0 chrIV 415090 . T C 2031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.907;QD=26.72;ReadPosRankSum=2.908;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:3,73:76:99:2064,213,0 chrIV 415430 . T C 6274.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=12.9053;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.73;SB=-3.303e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:6274,646,0 chrIV 416488 . G A 5363.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.6235;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.52;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5363,538,0 chrIV 423156 . T C 6949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.510;QD=23.32;ReadPosRankSum=1.674;SB=-3.736e+03 GT:AD:DP:GQ:PL 1/1:1,296:298:99:6949,727,0 chrIV 424076 . C G 3572.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.19;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3572,372,0 chrIV 424905 . C A 4641.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.82;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:4641,478,0 chrIV 425858 . C T 4137.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.9815;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=27.04;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:4137,415,0 chrIV 425975 . C T 2945 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2978,303,0 chrIV 426326 . C T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.8062;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.84;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3335,343,0 chrIV 426781 . A T 3680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=153;Dels=0.00;FS=5.945;HaplotypeScore=14.3864;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=2.349;QD=24.05;ReadPosRankSum=2.888;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3680,364,0 chrIV 426944 . A G 1312 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1345,135,0 chrIV 427330 . C T 4205.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.31;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4205,424,0 chrIV 428861 . A G 3876.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.6135;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.07;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3876,394,0 chrIV 429695 . C T 5568.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.14;SB=-2.923e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:5568,547,0 chrIV 431267 . T C 5771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=232;Dels=0.00;FS=2.715;HaplotypeScore=12.9974;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.451;QD=24.88;ReadPosRankSum=2.386;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:2,229:232:99:5771,592,0 chrIV 431674 . G C 4282.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.03;FS=0.000;HaplotypeScore=37.2533;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.85;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4282,439,0 chrIV 431960 . G A 4831.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.6222;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=26.99;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4831,487,0 chrIV 432174 . C T 3706.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.9261;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.19;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3706,373,0 chrIV 432463 . G A 2860 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=26.00;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,105:110:99:2893,277,0 chrIV 432487 . G C 2950 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.79;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2983,306,0 chrIV 433099 . G A 2199 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=26.49;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2232,231,0 chrIV 433160 . A C 2568 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=27.03;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2601,258,0 chrIV 433257 . A G 2255 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2288,234,0 chrIV 433297 . C T 2752 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.93;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2785,274,0 chrIV 433376 . G A 2612 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9722;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.24;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2645,259,0 chrIV 433396 . A G 2176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=-0.598;QD=19.78;ReadPosRankSum=1.701;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2209,228,0 chrIV 433401 . C T 2252 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.11;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2285,225,0 chrIV 433591 . T A 9067.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=19.9760;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=28.16;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,322:322:99:9067,881,0 chrIV 433703 . T C 5786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.1213;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.349;QD=24.62;ReadPosRankSum=1.658;SB=-3.073e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5786,586,0 chrIV 434124 . A G 1568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=6.100;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;MQRankSum=-0.850;QD=14.13;ReadPosRankSum=1.701;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:1,109:111:99:1601,165,0 chrIV 434129 . T C 1529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.22;MQ0=0;MQRankSum=0.524;QD=13.18;ReadPosRankSum=2.407;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:2,113:116:99:1562,162,0 chrIV 434178 . G A 2158 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=7.0208;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;QD=20.75;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2191,216,0 chrIV 434368 . G C 3072 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;QD=24.77;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3105,319,0 chrIV 434468 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.00;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrIV 434492 . C T 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.358;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.23;MQ0=2;MQRankSum=-0.358;QD=6.57;ReadPosRankSum=0.358;SB=2.03 GT:AD:DP:GQ:PL 1/1:2,5:7:9:78,9,0 chrIV 434516 . G C 52.97 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.23;MQ0=2;QD=7.57;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:85,9,0 chrIV 434776 . T A 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=0;MQRankSum=-1.094;QD=13.70;ReadPosRankSum=1.671;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1608,162,0 chrIV 434834 . C T 3422.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=24.80;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3422,352,0 chrIV 434864 . A T 2918 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=25.60;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2951,292,0 chrIV 435072 . T C 1993 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=24.91;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2026,213,0 chrIV 435200 . G T 1874 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=24.66;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1907,186,0 chrIV 435202 . A C 1651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-0.178;QD=21.44;ReadPosRankSum=2.288;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:2,74:77:99:1684,174,0 chrIV 435246 . T C 1026 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=20.12;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1059,108,0 chrIV 435518 . A T 1294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=58;Dels=0.00;FS=10.847;HaplotypeScore=6.0977;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-1.215;QD=22.31;ReadPosRankSum=2.237;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1327,129,0 chrIV 435532 . T C 1284 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.53;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1317,135,0 chrIV 435564 . T C 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=-1.039;QD=21.21;ReadPosRankSum=1.686;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1645,168,0 chrIV 435820 . A G 3837.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.60;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3837,391,0 chrIV 435908 . G A 2505 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.72;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2538,252,0 chrIV 435935 . C T 127.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.722;DP=93;Dels=0.00;FS=10.251;HaplotypeScore=7.1258;MLEAC=1;MLEAF=0.500;MQ=53.74;MQ0=0;MQRankSum=1.035;QD=1.37;ReadPosRankSum=-4.644;SB=-7.889e-03 GT:AD:DP:GQ:PL 0/1:79,11:93:32:157,0,32 chrIV 436026 . T C 2357 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.57;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2390,243,0 chrIV 436162 . A G 1088 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=22.67;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1121,114,0 chrIV 436237 . C T 1242 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=18.82;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1275,129,0 chrIV 436257 . G A 1674 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=6.3090;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=20.67;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1707,168,0 chrIV 436482 . T A 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=136;Dels=0.00;FS=2.966;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.371;QD=26.99;ReadPosRankSum=2.413;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3671,358,0 chrIV 436525 . C T 4181.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=25.81;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:4181,421,0 chrIV 436994 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=142;Dels=0.00;FS=11.133;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=0.681;QD=23.31;ReadPosRankSum=2.823;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3310,328,0 chrIV 437035 . C A 3102 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=23.50;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3135,304,0 chrIV 437130 . A G 1844 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4485;MLEAC=2;MLEAF=1.00;MQ=36.33;MQ0=0;QD=20.49;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1877,195,0 chrIV 437637 . C T 2378 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.8423;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;QD=22.65;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2411,246,0 chrIV 437695 . T G 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;MQRankSum=-0.654;QD=23.57;ReadPosRankSum=1.699;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2531,267,0 chrIV 437881 . C T 2255 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=21.89;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2288,243,0 chrIV 437890 . T C 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=107;Dels=0.00;FS=6.833;HaplotypeScore=4.3707;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=-0.656;QD=22.20;ReadPosRankSum=2.404;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2408,246,0 chrIV 437896 . G A 2383 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=11.4770;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=19.86;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2416,240,0 chrIV 437955 . A G 3207 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.2511;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.12;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3240,336,0 chrIV 438868 . T C 4521.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.3933;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.44;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4521,475,0 chrIV 439479 . A G 2468 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.93;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2501,261,0 chrIV 439746 . A T 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.969;QD=24.50;ReadPosRankSum=1.669;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2703,279,0 chrIV 439768 . T C 2645 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.95;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2678,270,0 chrIV 439851 . C G 3472.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5917;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.91;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3472,352,0 chrIV 440889 . T C 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=179;Dels=0.00;FS=12.348;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.376;QD=22.78;ReadPosRankSum=2.927;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:4077,421,0 chrIV 441071 . A G 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=131;Dels=0.00;FS=6.115;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.993;QD=21.50;ReadPosRankSum=2.900;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2850,300,0 chrIV 441238 . T G 5966.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=15.6876;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.50;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5966,622,0 chrIV 441367 . C T 5968.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.31;SB=-2.995e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5968,604,0 chrIV 441465 . A G 5816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=276;Dels=0.00;FS=2.993;HaplotypeScore=21.6433;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.479;QD=21.07;ReadPosRankSum=2.414;SB=-3.440e+03 GT:AD:DP:GQ:PL 1/1:2,272:276:99:5816,601,0 chrIV 441629 . G A 4587.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=21.24;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4587,475,0 chrIV 441636 . A G 4530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=0.110;QD=22.10;ReadPosRankSum=1.715;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4530,466,0 chrIV 441738 . C T 4793.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.8534;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.93;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4793,469,0 chrIV 441971 . C T 3698.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3698,364,0 chrIV 442273 . T C 3617.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.80;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3617,376,0 chrIV 442843 . T C 4194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.459;QD=27.59;ReadPosRankSum=1.709;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,151:152:99:4194,418,0 chrIV 443218 . T C 4024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=5.067;HaplotypeScore=6.1402;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.010;QD=24.10;ReadPosRankSum=1.691;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4024,403,0 chrIV 443547 . A G 1420 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.54;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1453,147,0 chrIV 443786 . C T 2659 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.3443;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=27.13;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2692,265,0 chrIV 444518 . T C 792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=42;Dels=0.00;FS=2.455;HaplotypeScore=7.1190;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.100;QD=18.86;ReadPosRankSum=3.446;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:5,36:42:84:825,84,0 chrIV 445208 . C A 6404.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.46;SB=-3.112e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:6404,625,0 chrIV 445249 . A G 6419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=260;Dels=0.00;FS=3.782;HaplotypeScore=14.3942;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.282;QD=24.69;ReadPosRankSum=1.678;SB=-3.060e+03 GT:AD:DP:GQ:PL 1/1:1,257:260:99:6419,643,0 chrIV 445581 . T C 4656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=197;Dels=0.00;FS=3.732;HaplotypeScore=9.5430;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.414;QD=23.63;ReadPosRankSum=1.714;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4656,481,0 chrIV 445817 . C T 4242.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.9236;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.52;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4242,421,0 chrIV 445993 . A G 3873.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.9202;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.47;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3873,406,0 chrIV 446016 . G A 4318.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=25.55;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4318,430,0 chrIV 446066 . A G 4098.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.9304;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.77;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4098,421,0 chrIV 446126 . T C 4579.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.36;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4579,466,0 chrIV 446188 . A G 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.776;QD=25.37;ReadPosRankSum=1.711;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4136,427,0 chrIV 446573 . T C 2047 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.66;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2080,210,0 chrIV 446658 . C T 1459 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=26.05;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1492,147,0 chrIV 446874 . C T 1113 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.71;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:99:1146,120,0 chrIV 446954 . G A 562 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:60:595,60,0 chrIV 447357 . C T 4327.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4327,427,0 chrIV 447952 . G C 4628.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.8771;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=24.62;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,181:188:99:4628,475,0 chrIV 448175 . A G 5340.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.4832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5340,535,0 chrIV 448388 . T C 4993.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.74;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4993,514,0 chrIV 448634 . G C 3963.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.39;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3963,403,0 chrIV 449024 . A G 4021.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4021,421,0 chrIV 449471 . G A 1873 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.5472;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;MQRankSum=0.371;QD=22.30;ReadPosRankSum=1.567;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1906,195,0 chrIV 449473 . A G 1837 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.7585;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=22.40;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1870,192,0 chrIV 449477 . C G 1767 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=4.5472;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=21.55;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1800,186,0 chrIV 449521 . A G 1234 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.4589;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=21.65;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1267,132,0 chrIV 449562 . G A 1519 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=22.34;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1552,156,0 chrIV 449566 . G C 1634 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=22.69;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1667,165,0 chrIV 449578 . T C 1288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=14.914;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-0.224;QD=20.77;ReadPosRankSum=1.676;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1321,135,0 chrIV 449579 . T C 1299 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=20.95;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1332,135,0 chrIV 449650 . G T 1284 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=20.06;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1317,141,0 chrIV 449709 . A G 536 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.096;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;MQRankSum=-1.650;QD=19.14;ReadPosRankSum=2.275;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:2,26:28:60:569,60,0 chrIV 449722 . A T 346 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.227;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.79;MQ0=0;MQRankSum=-0.742;QD=15.73;ReadPosRankSum=2.227;SB=-6.580e-03 GT:AD:DP:GQ:PL 1/1:2,20:22:51:379,51,0 chrIV 449727 . C A 343 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.18;MQ0=0;QD=20.18;SB=-7.338e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:39:376,39,0 chrIV 449742 . T C 117.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=16.75;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:150,15,0 chrIV 449761 . T A 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;DP=10;Dels=0.00;FS=11.181;HaplotypeScore=4.7175;MLEAC=1;MLEAF=0.500;MQ=44.10;MQ0=0;MQRankSum=-1.036;QD=3.10;ReadPosRankSum=-1.133;SB=-6.451e-03 GT:AD:DP:GQ:PL 0/1:6,4:10:61:61,0,91 chrIV 449770 . T C 243 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=5.9165;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=15.19;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:30:276,30,0 chrIV 449788 . T G 626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.109;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-0.473;QD=21.59;ReadPosRankSum=2.281;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:2,27:29:66:659,66,0 chrIV 449988 . G A 905 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=27.42;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:90:938,90,0 chrIV 450139 . C T 904 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.65;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:937,96,0 chrIV 450232 . G A 1882 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.6613;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.14;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1915,189,0 chrIV 450801 . T C 3479.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.66;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3479,366,0 chrIV 451145 . G C 6730.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=14.6740;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.38;SB=-3.409e+03 GT:AD:DP:GQ:PL 1/1:0,272:276:99:6730,679,0 chrIV 452236 . T C 4825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=190;Dels=0.00;FS=3.021;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.176;QD=25.39;ReadPosRankSum=2.423;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:2,186:190:99:4825,481,0 chrIV 452698 . C T 2526 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=27.16;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2559,255,0 chrIV 452771 . C T 857 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.21;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:87:890,87,0 chrIV 452803 . T C 764 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:797,81,0 chrIV 453755 . T C 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.448;QD=25.19;ReadPosRankSum=1.706;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3375,340,0 chrIV 453843 . C T 2766 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.67;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2799,288,0 chrIV 453852 . A T 2856 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.2861;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.49;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2889,283,0 chrIV 453908 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.14;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2778,277,0 chrIV 454502 . C T 5823.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-3.122e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5823,607,0 chrIV 454817 . T C 1816 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=22.15;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1849,192,0 chrIV 455316 . G A 4227.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.42;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4227,412,0 chrIV 455506 . T C 4470.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.69;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4470,457,0 chrIV 455545 . A T 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=158;Dels=0.00;FS=4.278;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.219;QD=25.21;ReadPosRankSum=1.710;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3983,397,0 chrIV 455618 . T C 4017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=2.599;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.871;QD=26.43;ReadPosRankSum=2.368;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:4017,406,0 chrIV 458042 . G T 3756.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.02;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3756,373,0 chrIV 458401 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.42;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2915,286,0 chrIV 458653 . T C 6374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.067;QD=26.78;ReadPosRankSum=2.429;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:2,235:238:99:6374,649,0 chrIV 458851 . G A 6994.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=17.5665;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.56;SB=-3.411e+03 GT:AD:DP:GQ:PL 1/1:0,308:310:99:6994,697,0 chrIV 459265 . T C 4761.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.0389;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.00;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4761,484,0 chrIV 459304 . G A 4542.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.66;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4542,451,0 chrIV 459514 . G T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.7421;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.75;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3605,361,0 chrIV 459567 . G A 3820.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.2409;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.53;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3820,376,0 chrIV 459811 . A G 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;DP=128;Dels=0.00;FS=9.348;HaplotypeScore=11.6679;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.552;QD=24.63;ReadPosRankSum=2.896;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:3,123:128:99:3186,322,0 chrIV 459909 . C T 3327.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3327,322,0 chrIV 460050 . G A 3829.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.96;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3829,370,0 chrIV 460219 . T C 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=128;Dels=0.00;FS=7.707;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.740;QD=23.74;ReadPosRankSum=2.373;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3072,315,0 chrIV 461192 . C T 4613.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.1931;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.35;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4613,466,0 chrIV 461320 . G A 4983.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.4922;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.84;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4983,493,0 chrIV 461425 . C T 2275 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.45;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2308,240,0 chrIV 461469 . G C 2001 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.23;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2034,213,0 chrIV 461615 . T C 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.386;QD=28.19;ReadPosRankSum=1.694;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2570,261,0 chrIV 462097 . T C 4384.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.5825;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.20;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4384,451,0 chrIV 462476 . C T 5507.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.3382;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.38;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5507,538,0 chrIV 462658 . T C 4111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=157;Dels=0.00;FS=2.825;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.540;QD=26.18;ReadPosRankSum=2.418;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:4111,421,0 chrIV 463263 . C A 4994.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.5149;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.91;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4994,496,0 chrIV 463393 . A G 4137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=168;Dels=0.00;FS=2.839;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.197;QD=24.63;ReadPosRankSum=2.391;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:4137,418,0 chrIV 464012 . C T 3432.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.43;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3432,357,0 chrIV 464138 . C T 4364.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=17.6314;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.85;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4364,448,0 chrIV 464256 . G A 5696.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.4932;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=27.25;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5696,550,0 chrIV 464487 . C G 4895.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.65;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4895,496,0 chrIV 464571 . T C 4573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=4.026;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.195;QD=24.45;ReadPosRankSum=1.658;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4573,454,0 chrIV 465051 . T A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=20.70;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3457,346,0 chrIV 465056 . C G 3071 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=0;QD=19.07;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3104,318,0 chrIV 465343 . T A 3602.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=25.55;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3602,355,0 chrIV 465360 . C T 3580.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=23.10;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3580,355,0 chrIV 465541 . C G 4034.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3382;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=24.90;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4034,403,0 chrIV 465563 . T A 3860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=175;Dels=0.00;FS=3.136;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=1.118;QD=22.06;ReadPosRankSum=1.692;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3860,400,0 chrIV 465662 . G A 4768.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=166.8947;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.38;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4768,478,0 chrIV 465690 . G A 4166.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.62;SB=-2.913e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4166,412,0 chrIV 465882 . G A 5956.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=25.67;SB=-3.224e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5956,589,0 chrIV 466062 . A G 5707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=238;Dels=0.00;FS=3.880;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.118;QD=23.98;ReadPosRankSum=1.688;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:1,236:238:99:5707,601,0 chrIV 466170 . A G 7741.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=20.2873;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.32;SB=-3.606e+03 GT:AD:DP:GQ:PL 1/1:0,329:332:99:7741,814,0 chrIV 466356 . A G 7174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.714;DP=317;Dels=0.00;FS=7.943;HaplotypeScore=18.5832;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-1.058;QD=22.63;ReadPosRankSum=3.819;SB=-3.486e+03 GT:AD:DP:GQ:PL 1/1:5,310:317:99:7174,718,0 chrIV 466362 . T C 7168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=313;Dels=0.00;FS=8.277;HaplotypeScore=10.3251;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=1.156;QD=22.90;ReadPosRankSum=2.395;SB=-3.322e+03 GT:AD:DP:GQ:PL 1/1:2,311:313:99:7168,745,0 chrIV 466410 . T C 6129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=296;Dels=0.00;FS=14.448;HaplotypeScore=14.8802;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.745;QD=20.71;ReadPosRankSum=2.500;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:3,292:296:99:6129,615,0 chrIV 466737 . C T 6020.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:6020,592,0 chrIV 467306 . C T 4483.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.91;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4483,439,0 chrIV 467442 . C T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=28.33;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3513,349,0 chrIV 467595 . T C 4815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=3.167;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=1.257;QD=24.44;ReadPosRankSum=1.697;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4815,505,0 chrIV 467790 . C T 5493.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=22.79;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5493,553,0 chrIV 467803 . T A 5843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.499;QD=23.37;ReadPosRankSum=1.718;SB=-3.085e+03 GT:AD:DP:GQ:PL 1/1:1,249:250:99:5843,571,0 chrIV 469194 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3497,346,0 chrIV 470667 . T C 1893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.312;QD=24.27;ReadPosRankSum=2.292;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1926,195,0 chrIV 472536 . C T 1293.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.154;DP=393;Dels=0.00;FS=61.599;HaplotypeScore=24.6091;MLEAC=1;MLEAF=0.500;MQ=20.97;MQ0=94;MQRankSum=-3.585;QD=3.29;ReadPosRankSum=1.313;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:222,171:393:99:1323,0,2836 chrIV 472549 . T C 2321.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.893;DP=390;Dels=0.00;FS=27.233;HaplotypeScore=10.4220;MLEAC=1;MLEAF=0.500;MQ=19.60;MQ0=110;MQRankSum=2.034;QD=5.95;ReadPosRankSum=-0.609;SB=-2.370e+02 GT:AD:DP:GQ:PL 0/1:172,215:390:99:2351,0,1267 chrIV 472918 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=1;QD=23.71;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3651,361,0 chrIV 473912 . A G 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=126;Dels=0.00;FS=2.888;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.185;QD=22.61;ReadPosRankSum=2.411;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2882,289,0 chrIV 474625 . T G 4641.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=24.30;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4641,472,0 chrIV 474628 . A G 4515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.802;QD=23.76;ReadPosRankSum=1.677;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4515,463,0 chrIV 479557 . T C 3580.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3580,364,0 chrIV 480136 . T C 5053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=201;Dels=0.00;FS=2.989;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.639;QD=25.14;ReadPosRankSum=2.425;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:5053,511,0 chrIV 482653 . T C 3808.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=25.56;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3808,394,0 chrIV 482955 . T C 2901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=122;Dels=0.00;FS=2.692;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.779;QD=23.78;ReadPosRankSum=2.409;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2934,300,0 chrIV 483341 . T C 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.466;QD=23.85;ReadPosRankSum=1.679;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3158,322,0 chrIV 483422 . G A 4007.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.7142;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=29.04;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:4007,391,0 chrIV 484028 . A G 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=118;Dels=0.00;FS=2.710;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.672;QD=22.77;ReadPosRankSum=2.366;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2720,285,0 chrIV 484757 . G A 4252.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=16.74;SB=-3.372e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:4252,421,0 chrIV 485593 . A G 4427.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.59;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4427,445,0 chrIV 485672 . G A 3743.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.2543;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.76;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,168:172:99:3743,373,0 chrIV 485723 . C T 4053.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.67;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4053,409,0 chrIV 485738 . C G 4226.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=21.45;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4226,424,0 chrIV 487279 . A G 4417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=178;Dels=0.00;FS=3.615;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.302;QD=24.81;ReadPosRankSum=1.654;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4417,448,0 chrIV 491218 . C A 4516.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.5630;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.88;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4516,442,0 chrIV 491804 . T A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=26.63;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3675,367,0 chrIV 498305 . C T 3534.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.4992;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.10;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3534,352,0 chrIV 499794 . G A 3656.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3656,384,0 chrIV 500512 . C T 3960.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.29;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3960,397,0 chrIV 500594 . A G 5140.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=25.57;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:5140,514,0 chrIV 500673 . G A 4661.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.6398;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=24.66;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4661,463,0 chrIV 501667 . A C 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.137;QD=24.50;ReadPosRankSum=1.707;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3406,349,0 chrIV 505265 . A G 407 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.38;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,20:21:45:440,45,0 chrIV 505548 . T C 2977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.585;QD=25.02;ReadPosRankSum=1.644;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:3010,315,0 chrIV 506998 . G A 2589 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=20.88;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2622,264,0 chrIV 507180 . C T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.8736;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.67;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3620,355,0 chrIV 507490 . G A 2992 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.68;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3025,324,0 chrIV 507578 . G A 4485.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.0155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.92;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4485,445,0 chrIV 507718 . A T 2297 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.68;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2330,228,0 chrIV 507975 . A G 289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.327;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=13.8547;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.714;QD=16.06;ReadPosRankSum=-1.327;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:1,16:18:39:322,39,0 chrIV 508096 . T A 1570 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1603,168,0 chrIV 509186 . A T 4107.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.59;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4107,403,0 chrIV 509407 . G T 1532 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.70;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1565,153,0 chrIV 509488 . G A 1273 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1306,132,0 chrIV 509821 . T C 2958 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=24.25;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2991,304,0 chrIV 509831 . T C 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.395;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.705;QD=22.71;ReadPosRankSum=1.703;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2736,276,0 chrIV 510655 . C T 3992.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.34;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3992,394,0 chrIV 511129 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3082,318,0 chrIV 512368 . C A 5268.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.51;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,227:234:99:5268,556,0 chrIV 512393 . G A 5530.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.77;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5530,586,0 chrIV 512478 . A C 4830.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.3212;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.77;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4830,493,0 chrIV 513392 . T C 2567 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.091;DP=128;Dels=0.00;FS=1.390;HaplotypeScore=4.2150;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;MQRankSum=1.831;QD=20.05;ReadPosRankSum=3.071;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:8,119:128:99:2600,199,0 chrIV 513395 . A G 2449 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9490;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;MQRankSum=1.756;QD=19.44;ReadPosRankSum=3.044;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:7,118:126:99:2482,184,0 chrIV 513397 . C T 2529 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.260;DP=125;Dels=0.00;FS=1.985;HaplotypeScore=4.1603;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;MQRankSum=0.624;QD=20.23;ReadPosRankSum=1.845;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:4,121:125:99:2562,188,0 chrIV 513586 . T C 2534 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=1;QD=23.68;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2567,267,0 chrIV 513604 . A G 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3552;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;MQRankSum=-1.580;QD=24.10;ReadPosRankSum=1.702;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2780,285,0 chrIV 519633 . A T 115.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.88;MQ0=3;QD=14.41;SB=-3.076e+01 GT:AD:DP:GQ:PL 1/1:3,5:8:15:148,15,0 chrIV 519649 . G A 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.225;DP=81;Dels=0.00;FS=2.999;HaplotypeScore=27.6884;MLEAC=1;MLEAF=0.500;MQ=33.40;MQ0=1;MQRankSum=0.312;QD=0.21;ReadPosRankSum=1.560;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:75,5:81:47:47,0,314 chrIV 520815 . A G 3836.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.75;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3836,385,0 chrIV 521406 . T C 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.341;QD=22.81;ReadPosRankSum=1.623;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2930,300,0 chrIV 521623 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.11;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2968,300,0 chrIV 524808 . T C 5375.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-3.116e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5375,538,0 chrIV 525250 . G T 704 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=22.8489;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=10.67;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:75:737,75,0 chrIV 525412 . G A 2806 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.72;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2839,274,0 chrIV 525682 . T C 4373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=195;Dels=0.00;FS=3.033;HaplotypeScore=8.8294;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.691;QD=22.43;ReadPosRankSum=1.714;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4373,448,0 chrIV 526727 . A G 4475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=182;Dels=0.00;FS=6.977;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.221;QD=24.59;ReadPosRankSum=2.367;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:2,176:182:99:4475,451,0 chrIV 527113 . C G 3986.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.02;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3986,415,0 chrIV 527319 . C G 2706 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.13;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2739,288,0 chrIV 527386 . G A 3921.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6173;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=26.67;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3921,414,0 chrIV 527530 . A C 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=157;Dels=0.00;FS=6.331;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;MQRankSum=-0.759;QD=22.70;ReadPosRankSum=2.387;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3564,378,0 chrIV 527743 . A G 1140 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=0;MQRankSum=-2.353;QD=15.00;ReadPosRankSum=2.385;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1173,126,0 chrIV 527797 . A G 653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=75;Dels=0.00;FS=7.990;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.05;MQ0=2;MQRankSum=-1.182;QD=8.71;ReadPosRankSum=2.381;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:2,72:75:75:686,75,0 chrIV 527851 . A G 941 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=5;QD=14.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,63:64:99:974,102,0 chrIV 537961 . A G 163.06 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=9;QD=5.62;SB=-7.490e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:21:196,21,0 chrIV 537970 . T C 300 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.17;MQ0=5;MQRankSum=1.375;QD=8.82;ReadPosRankSum=1.614;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:1,33:34:36:333,36,0 chrIV 537976 . C T 355 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.26;MQ0=3;QD=9.59;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:39:388,39,0 chrIV 537994 . A G 394 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=1;QD=7.73;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:45:427,45,0 chrIV 538009 . C T 486 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=1;QD=7.04;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:54:519,54,0 chrIV 538030 . C G 470 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=5.66;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:54:503,54,0 chrIV 538039 . T G 471 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;MQRankSum=0.402;QD=4.66;ReadPosRankSum=2.401;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:2,99:101:54:504,54,0 chrIV 538042 . G A 556 filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=5.56;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,100:100:60:589,60,0 chrIV 538051 . C T 649 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=6.76;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,96:96:69:682,69,0 chrIV 538054 . A G 635 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=6.29;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,101:101:72:668,72,0 chrIV 538057 . T C 693 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;MQRankSum=-0.800;QD=6.54;ReadPosRankSum=2.934;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:3,103:106:75:726,75,0 chrIV 538066 . C T 792 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=6.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,114:114:84:825,84,0 chrIV 538069 . A G 803 filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=7.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,111:111:87:836,87,0 chrIV 538120 . G T 1309 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.4481;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1342,135,0 chrIV 538141 . T A 1553 filter AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=98.0266;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:1586,165,0 chrIV 538156 . A G 1294 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8900;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1327,144,0 chrIV 538159 . G A 1337 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.8634;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1370,144,0 chrIV 538162 . C A 255 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.9064;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.41;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,106:106:36:288,36,0 chrIV 538163 . G C 253 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=104.4216;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.39;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,106:106:36:286,36,0 chrIV 538165 . G C 355 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=3.26;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,109:109:51:388,51,0 chrIV 538167 . T C 418 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=3.83;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,109:109:57:451,57,0 chrIV 538168 . A G 414 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=3.73;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,111:111:57:447,57,0 chrIV 538174 . A G 1513 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=172;Dels=0.00;FS=12.330;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=0;MQRankSum=-1.448;QD=8.80;ReadPosRankSum=1.712;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:1,170:172:99:1546,159,0 chrIV 538183 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.8137;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=10.92;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,181:181:99:2010,201,0 chrIV 538866 . C T 2441 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.2125;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.91;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2474,243,0 chrIV 539196 . C A 5119.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.98;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5119,529,0 chrIV 539207 . T C 5250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=251;Dels=0.00;FS=6.213;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.034;QD=20.92;ReadPosRankSum=2.391;SB=-3.408e+03 GT:AD:DP:GQ:PL 1/1:2,249:251:99:5250,547,0 chrIV 539475 . G A 4444.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=16.8432;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=25.11;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4444,436,0 chrIV 540249 . G C 4256.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.89;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:4256,433,0 chrIV 541135 . A G 1529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.051;QD=25.07;ReadPosRankSum=1.562;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1562,159,0 chrIV 541221 . A T 2364 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=11.7068;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=25.15;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2397,234,0 chrIV 541267 . G A 2364 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=24.37;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2397,240,0 chrIV 541275 . C T 2175 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.75;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2208,225,0 chrIV 541555 . T G 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.088;DP=138;Dels=0.00;FS=8.573;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.244;QD=22.96;ReadPosRankSum=2.269;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:3202,328,0 chrIV 541985 . T A 2350 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.54;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2383,234,0 chrIV 543883 . T A 2757 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=26.01;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2790,280,0 chrIV 544280 . T G 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.8792;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.465;QD=25.58;ReadPosRankSum=2.398;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2463,258,0 chrIV 544346 . G T 3601.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=26.09;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3601,352,0 chrIV 544372 . A T 3467.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=25.12;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3467,334,0 chrIV 545047 . G A 4321.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=26.35;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4321,415,0 chrIV 545374 . C T 6884.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.03;SB=-3.357e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:6884,694,0 chrIV 546036 . G A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0127;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.04;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3480,349,0 chrIV 546394 . T C 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=141;Dels=0.00;FS=4.058;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.336;QD=19.98;ReadPosRankSum=1.608;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2850,297,0 chrIV 546556 . C T 268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=105.3969;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.654;QD=1.99;ReadPosRankSum=1.373;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:30:301,30,0 chrIV 547875 . C A 868 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.69;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:96:901,96,0 chrIV 547876 . A G 856 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=17.12;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:96:889,96,0 chrIV 547949 . A T 2142 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.28;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2175,219,0 chrIV 548356 . T C 3580.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.19;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3580,378,0 chrIV 549071 . C T 5373.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=17.8377;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5373,538,0 chrIV 551387 . C A 5395.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.7102;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.75;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:5395,565,0 chrIV 551436 . T C 5356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=210;Dels=0.00;FS=2.943;HaplotypeScore=10.9667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.017;QD=25.50;ReadPosRankSum=2.391;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:5356,553,0 chrIV 551764 . A C 3099 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.96;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3132,319,0 chrIV 551843 . G T 1395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.276;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=25.9878;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.550;QD=11.43;ReadPosRankSum=-0.456;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:1,114:122:99:1428,156,0 chrIV 552477 . T G 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.737;DP=119;Dels=0.00;FS=118.740;HaplotypeScore=16.7904;MLEAC=1;MLEAF=0.500;MQ=59.22;MQ0=0;MQRankSum=1.033;QD=0.26;ReadPosRankSum=-1.904;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,35:119:61:61,0,1523 chrIV 553234 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.4486;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.45;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3011,315,0 chrIV 553651 . G A 4120.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.2180;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.28;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4120,412,0 chrIV 554971 . A T 3578.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3578,375,0 chrIV 555051 . C G 2401 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2434,252,0 chrIV 555160 . C G 1933 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1966,201,0 chrIV 555313 . T A 2296 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.2672;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.39;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2329,228,0 chrIV 555349 . A G 2397 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2430,252,0 chrIV 555588 . C T 1392 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.47;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1425,150,0 chrIV 555957 . G A 5999.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=11.8366;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.29;SB=-3.541e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:5999,604,0 chrIV 556934 . A C 3617.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.8598;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.34;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3617,370,0 chrIV 557242 . T C 6021.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=18.9024;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.38;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:0,244:247:99:6021,616,0 chrIV 557523 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.98;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3981,397,0 chrIV 559461 . A T 4265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=5.105;HaplotypeScore=9.6166;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.257;QD=26.33;ReadPosRankSum=1.711;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4265,427,0 chrIV 560365 . G A 5670.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.2136;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.66;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5670,577,0 chrIV 560449 . A G 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=175;Dels=0.00;FS=2.632;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.405;QD=23.82;ReadPosRankSum=2.379;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:4168,421,0 chrIV 562103 . T A 4668.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.65;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4668,463,0 chrIV 562973 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=26.87;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2478,246,0 chrIV 563209 . G C 2398 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.04;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2431,246,0 chrIV 563218 . G T 2564 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.91;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2597,256,0 chrIV 563382 . T C 2032 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.62;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2065,213,0 chrIV 564745 . G A 2944 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0258;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.55;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2977,303,0 chrIV 565313 . C T 6948.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,282:284:99:6948,709,0 chrIV 566483 . T C 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=185;Dels=0.00;FS=3.129;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.152;QD=24.31;ReadPosRankSum=1.676;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4498,457,0 chrIV 566637 . A G 4152.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4152,418,0 chrIV 567144 . T G 4625.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.9233;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.13;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4625,472,0 chrIV 567717 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.27;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2964,298,0 chrIV 568131 . A G 4391.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4391,460,0 chrIV 568569 . A G 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.929;QD=22.99;ReadPosRankSum=1.640;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3495,361,0 chrIV 568816 . G A 2652 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=26.26;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2685,262,0 chrIV 568863 . G A 2556 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.03;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2589,267,0 chrIV 568871 . G A 2739 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=1;QD=24.03;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2772,280,0 chrIV 569059 . A G 2860 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.83;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2893,294,0 chrIV 569301 . A G 3205.99 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.72;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3239,322,0 chrIV 569606 . T A 3186 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.33;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3219,325,0 chrIV 570044 . G A 2252 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.22;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2285,225,0 chrIV 570373 . C T 2422 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2455,246,0 chrIV 570480 . T A 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=3.769;HaplotypeScore=15.4830;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.251;QD=20.66;ReadPosRankSum=1.653;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2760,268,0 chrIV 571372 . A G 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=149;Dels=0.00;FS=6.412;HaplotypeScore=15.3023;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.174;QD=26.07;ReadPosRankSum=2.416;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3884,394,0 chrIV 572100 . C T 3140 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3173,310,0 chrIV 572145 . A G 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.447;QD=26.46;ReadPosRankSum=1.676;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:3307,336,0 chrIV 572190 . T C 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=148;Dels=0.00;FS=6.536;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.473;QD=25.43;ReadPosRankSum=2.350;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3763,388,0 chrIV 572208 . G A 3939.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=26.09;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3939,391,0 chrIV 572610 . C T 4419.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4419,442,0 chrIV 573928 . A G 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.299;QD=24.58;ReadPosRankSum=1.666;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2589,264,0 chrIV 574093 . G A 3431.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3431,352,0 chrIV 574753 . T C 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.1581;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.206;QD=22.08;ReadPosRankSum=1.715;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4527,463,0 chrIV 575378 . C T 4004.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.98;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:4004,412,0 chrIV 575468 . A C 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.222;QD=22.17;ReadPosRankSum=1.690;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,162:167:99:3703,382,0 chrIV 576258 . C T 1473 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=60.58;MQ0=0;QD=20.75;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1506,156,0 chrIV 576336 . T A 384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=64;Dels=0.00;FS=6.219;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.064;QD=6.00;ReadPosRankSum=2.033;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:45:417,45,0 chrIV 578506 . A G 1979 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=21.05;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2012,204,0 chrIV 578512 . T C 1783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9987;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-1.148;QD=20.03;ReadPosRankSum=1.576;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1816,186,0 chrIV 578566 . T A 2007 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.35;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2040,201,0 chrIV 578638 . T C 3778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=172;Dels=0.00;FS=2.580;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=-0.725;QD=21.97;ReadPosRankSum=2.948;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:3778,376,0 chrIV 578647 . C T 3572.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=20.41;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3572,367,0 chrIV 578649 . T C 3594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=174;Dels=0.00;FS=2.583;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=-0.178;QD=20.66;ReadPosRankSum=2.407;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3594,361,0 chrIV 578722 . A G 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=4.122;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=0.145;QD=17.67;ReadPosRankSum=1.710;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:2789,288,0 chrIV 578728 . A G 2808 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=18.97;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2841,294,0 chrIV 578841 . G A 4730.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.8571;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=24.89;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4730,466,0 chrIV 579494 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=26.95;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3800,370,0 chrIV 579755 . A G 3691.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=4.505;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=-0.285;QD=23.36;ReadPosRankSum=1.688;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3691,382,0 chrIV 579762 . A C 3347.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=159;Dels=0.00;FS=8.794;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;MQRankSum=0.181;QD=21.05;ReadPosRankSum=2.339;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3347,342,0 chrIV 579764 . G A 3341.01 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=21.98;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3341,343,0 chrIV 579809 . A G 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=152;Dels=0.00;FS=3.310;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;MQRankSum=-0.092;QD=19.28;ReadPosRankSum=1.709;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:2964,309,0 chrIV 579813 . A G 2803 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=18.94;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2836,288,0 chrIV 579869 . C T 3349.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.67;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3349,340,0 chrIV 579879 . A G 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=0.736;QD=21.18;ReadPosRankSum=1.710;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3410,352,0 chrIV 579940 . G A 4731.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=24.39;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4731,463,0 chrIV 580006 . T C 3931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=189;Dels=0.00;FS=2.828;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;MQRankSum=-0.558;QD=20.80;ReadPosRankSum=2.371;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:2,185:189:99:3931,406,0 chrIV 580011 . T C 3986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.2623;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=-0.962;QD=20.13;ReadPosRankSum=1.680;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:3986,412,0 chrIV 580119 . G C 4970.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.89;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4970,502,0 chrIV 580191 . T C 4973.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.79;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4973,520,0 chrIV 580230 . T C 4881.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=25.03;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4881,502,0 chrIV 580374 . C T 2187 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.09;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2220,237,0 chrIV 580820 . T A 4651.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.2921;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.87;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4651,460,0 chrIV 580899 . T C 4100.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.79;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4100,421,0 chrIV 580972 . A G 4749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=3.821;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.364;QD=24.86;ReadPosRankSum=1.714;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:1,187:191:99:4749,490,0 chrIV 581004 . A C 5780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=225;Dels=0.00;FS=7.347;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.007;QD=25.69;ReadPosRankSum=2.417;SB=-2.826e+03 GT:AD:DP:GQ:PL 1/1:2,221:225:99:5780,580,0 chrIV 581091 . C T 5160.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.0936;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.16;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:5160,505,0 chrIV 581181 . T C 4744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=3.378;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.620;QD=25.51;ReadPosRankSum=1.713;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4744,490,0 chrIV 581388 . A G 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.159;QD=25.82;ReadPosRankSum=1.690;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4209,436,0 chrIV 581521 . G A 4114.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.71;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:4114,403,0 chrIV 581857 . A G 4300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=177;Dels=0.00;FS=7.692;HaplotypeScore=14.3486;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.167;QD=24.29;ReadPosRankSum=2.421;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:2,167:177:99:4300,454,0 chrIV 581897 . A C 4932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=203;Dels=0.00;FS=5.130;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=1.303;QD=24.30;ReadPosRankSum=1.715;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4932,520,0 chrIV 582132 . G T 5533.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.0459;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=24.27;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5533,538,0 chrIV 582144 . G A 5436.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=23.84;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5436,541,0 chrIV 582217 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.5075;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=23.85;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3363,340,0 chrIV 582238 . A T 3827.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=25.68;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3827,376,0 chrIV 582466 . T G 4216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=175;Dels=0.00;FS=2.982;HaplotypeScore=12.1806;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.027;QD=24.09;ReadPosRankSum=2.421;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:2,170:175:99:4216,441,0 chrIV 582555 . A G 2772 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.2657;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=21.32;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2805,291,0 chrIV 582571 . T C 3184 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.74;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3217,327,0 chrIV 582739 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.691;QD=24.40;ReadPosRankSum=1.709;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3758,394,0 chrIV 583013 . A G 4138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=171;Dels=0.00;FS=4.311;HaplotypeScore=11.1952;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.630;QD=24.20;ReadPosRankSum=1.712;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4138,427,0 chrIV 583094 . T C 4624.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4624,478,0 chrIV 583433 . A G 3845.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.89;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3845,394,0 chrIV 583733 . A G 4170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=162;Dels=0.00;FS=7.864;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.468;QD=25.74;ReadPosRankSum=2.419;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:4170,415,0 chrIV 583765 . G A 4020.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=24.22;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4020,388,0 chrIV 583767 . A G 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=3.602;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.123;QD=22.80;ReadPosRankSum=1.669;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3762,396,0 chrIV 583846 . A G 4984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=211;Dels=0.00;FS=2.717;HaplotypeScore=12.6999;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.051;QD=23.62;ReadPosRankSum=2.379;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:2,208:211:99:4984,502,0 chrIV 583925 . G A 4828.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=25.02;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4828,469,0 chrIV 583943 . A G 4337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=192;Dels=0.00;FS=7.283;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.241;QD=22.59;ReadPosRankSum=1.618;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:2,187:192:99:4337,436,0 chrIV 584012 . T C 4170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=166;Dels=0.00;FS=9.357;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-1.364;QD=25.12;ReadPosRankSum=2.920;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:3,160:166:99:4170,427,0 chrIV 584486 . A T 3636.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=23.16;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3636,369,0 chrIV 584489 . A T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=22.79;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3555,360,0 chrIV 584515 . C T 2518 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=21.52;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2551,252,0 chrIV 584534 . G A 2085 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=18.78;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2118,216,0 chrIV 584913 . G C 4156.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.0817;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.65;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4156,424,0 chrIV 585389 . T C 3518.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.10;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3518,352,0 chrIV 585554 . A G 5643.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=8.4539;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.32;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5643,568,0 chrIV 585820 . A G 4891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=192;Dels=0.00;FS=3.603;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.548;QD=25.47;ReadPosRankSum=1.714;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:1,187:192:99:4891,496,0 chrIV 585908 . C T 5475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=214;Dels=0.00;FS=3.532;HaplotypeScore=19.3420;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.294;QD=25.58;ReadPosRankSum=0.899;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:5475,538,0 chrIV 586264 . T C 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=198;Dels=0.00;FS=8.948;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.031;QD=21.09;ReadPosRankSum=2.350;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4175,436,0 chrIV 586457 . A G 3809.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3809,388,0 chrIV 587932 . A G 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=3.788;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-0.284;QD=27.63;ReadPosRankSum=1.704;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3399,343,0 chrIV 588381 . A T 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.146;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.726;QD=23.38;ReadPosRankSum=2.370;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3600,355,0 chrIV 588465 . A G 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=165;Dels=0.00;FS=6.061;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.909;QD=25.68;ReadPosRankSum=2.958;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:4237,421,0 chrIV 588509 . A G 3091 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.4919;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.73;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3124,324,0 chrIV 588560 . A G 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-1.457;QD=22.20;ReadPosRankSum=1.693;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1987,201,0 chrIV 588583 . G A 1709 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.87;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1742,180,0 chrIV 588705 . G T 1754 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=24.36;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1787,171,0 chrIV 588711 . G T 1516 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=22.97;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1549,159,0 chrIV 589440 . T C 2263 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.33;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2296,231,0 chrIV 589456 . G C 2098 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=24.40;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2131,213,0 chrIV 589643 . T G 426 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=21.9230;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=9.06;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:48:459,48,0 chrIV 589702 . C G 165.06 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=11.00;SB=-8.806e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:21:198,21,0 chrIV 589875 . C T 2519 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=26.24;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2552,249,0 chrIV 590328 . A G 5760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=252;Dels=0.00;FS=6.506;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.734;QD=22.86;ReadPosRankSum=2.410;SB=-3.398e+03 GT:AD:DP:GQ:PL 1/1:2,247:252:99:5760,598,0 chrIV 590885 . A T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.73;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3455,354,0 chrIV 590898 . T C 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-1.669;QD=21.21;ReadPosRankSum=1.607;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3521,355,0 chrIV 591021 . A G 5867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=225;Dels=0.00;FS=6.559;HaplotypeScore=16.0821;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.355;QD=26.08;ReadPosRankSum=2.428;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5867,604,0 chrIV 591077 . G T 5262.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=26.71;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5262,517,0 chrIV 591129 . A G 4716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=184;Dels=0.00;FS=10.638;HaplotypeScore=15.6824;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=1.934;QD=25.63;ReadPosRankSum=2.962;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:3,179:184:99:4716,490,0 chrIV 591205 . C T 5751.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.79;SB=-2.959e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5751,574,0 chrIV 591737 . T C 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.081;QD=23.41;ReadPosRankSum=2.381;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2538,261,0 chrIV 592050 . T C 5819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=241;Dels=0.00;FS=5.290;HaplotypeScore=11.0114;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.982;QD=24.15;ReadPosRankSum=1.718;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,239:241:99:5819,589,0 chrIV 592072 . T C 4905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=216;Dels=0.00;FS=5.400;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-1.458;QD=22.71;ReadPosRankSum=1.716;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4905,517,0 chrIV 592224 . A G 3619.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.05;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3619,373,0 chrIV 592352 . T G 5979.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=16.2604;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=25.55;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5979,601,0 chrIV 592967 . C T 779 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=12.5126;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=13.67;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:81:812,81,0 chrIV 593121 . G T 1466 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.28;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1499,147,0 chrIV 593211 . A C 2984 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=26.18;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:3017,309,0 chrIV 593316 . A G 4195.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.89;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4195,421,0 chrIV 593463 . A G 5576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=267;Dels=0.00;FS=2.960;HaplotypeScore=13.4902;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.832;QD=20.88;ReadPosRankSum=2.404;SB=-3.289e+03 GT:AD:DP:GQ:PL 1/1:2,265:267:99:5576,595,0 chrIV 593517 . T G 5546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=261;Dels=0.00;FS=10.192;HaplotypeScore=13.8083;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.764;QD=21.25;ReadPosRankSum=2.919;SB=-3.280e+03 GT:AD:DP:GQ:PL 1/1:3,256:261:99:5546,565,0 chrIV 593642 . T C 4835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=228;Dels=0.00;FS=3.738;HaplotypeScore=18.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.221;QD=21.21;ReadPosRankSum=1.717;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:4835,496,0 chrIV 593751 . C T 6174.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.31;SB=-2.902e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:6174,628,0 chrIV 593816 . T A 6118.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=14.7977;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.440;QD=25.07;ReadPosRankSum=1.661;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:6118,625,0 chrIV 594035 . T A 5651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=237;Dels=0.00;FS=7.608;HaplotypeScore=27.9947;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.600;QD=23.84;ReadPosRankSum=2.418;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:2,235:237:99:5651,580,0 chrIV 595029 . A G 3016 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=25.34;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3049,310,0 chrIV 595528 . A G 3935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.724;DP=165;Dels=0.00;FS=5.976;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.552;QD=23.85;ReadPosRankSum=2.920;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3935,406,0 chrIV 596055 . T C 5864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=-0.299;QD=25.28;ReadPosRankSum=1.687;SB=-3.148e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5864,610,0 chrIV 596184 . T G 4796.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.85;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4796,484,0 chrIV 596731 . T G 1853 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.02;FS=0.000;HaplotypeScore=39.0080;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=19.51;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,89:93:99:1886,195,0 chrIV 596817 . T C 1331 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=25.11;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1364,141,0 chrIV 596843 . A T 1611 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=26.41;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1644,165,0 chrIV 598184 . T G 1461 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.95;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1494,156,0 chrIV 598232 . C T 1007 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1040,102,0 chrIV 598474 . C T 1240 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.85;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1273,129,0 chrIV 598656 . C T 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.792;QD=26.86;ReadPosRankSum=0.000;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1913,198,0 chrIV 598729 . C T 2227 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=21.83;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2260,219,0 chrIV 598737 . A G 2155 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.92;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2188,219,0 chrIV 599238 . C T 4188.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4188,433,0 chrIV 599314 . T C 3991.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.34;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3991,406,0 chrIV 599511 . A G 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=3.074;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.879;QD=25.48;ReadPosRankSum=1.682;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3516,361,0 chrIV 600764 . G A 4570.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.5722;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=25.67;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4570,451,0 chrIV 601041 . A G 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;DP=183;Dels=0.00;FS=6.010;HaplotypeScore=151.4148;MLEAC=1;MLEAF=0.500;MQ=46.69;MQ0=0;MQRankSum=-7.726;QD=0.17;ReadPosRankSum=2.184;SB=-3.800e+02 GT:AD:DP:GQ:PL 0/1:132,51:183:62:62,0,1712 chrIV 601102 . A T 1773.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.973;DP=482;Dels=0.00;FS=13.044;HaplotypeScore=11.9171;MLEAC=1;MLEAF=0.500;MQ=51.11;MQ0=0;MQRankSum=-14.811;QD=3.68;ReadPosRankSum=1.956;SB=-2.352e+03 GT:AD:DP:GQ:PL 0/1:267,215:482:99:1803,0,5485 chrIV 601119 . C T 1532.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.757;DP=531;Dels=0.00;FS=11.814;HaplotypeScore=38.1376;MLEAC=1;MLEAF=0.500;MQ=53.01;MQ0=0;MQRankSum=-14.102;QD=2.89;ReadPosRankSum=4.481;SB=-1.972e+03 GT:AD:DP:GQ:PL 0/1:333,198:531:99:1562,0,6820 chrIV 601123 . C A 1318.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.758;DP=529;Dels=0.00;FS=23.379;HaplotypeScore=35.8495;MLEAC=1;MLEAF=0.500;MQ=53.80;MQ0=0;MQRankSum=-14.132;QD=2.49;ReadPosRankSum=4.980;SB=-1.807e+03 GT:AD:DP:GQ:PL 0/1:344,182:529:99:1348,0,7229 chrIV 601125 . T C 1285.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.653;DP=530;Dels=0.00;FS=23.498;HaplotypeScore=33.4835;MLEAC=1;MLEAF=0.500;MQ=53.75;MQ0=0;MQRankSum=-12.380;QD=2.42;ReadPosRankSum=4.314;SB=-1.781e+03 GT:AD:DP:GQ:PL 0/1:349,180:530:99:1315,0,7605 chrIV 601140 . T C 673.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.714;DP=478;Dels=0.00;FS=20.047;HaplotypeScore=25.3029;MLEAC=1;MLEAF=0.500;MQ=54.60;MQ0=0;MQRankSum=-9.649;QD=1.41;ReadPosRankSum=-0.332;SB=-1.232e+03 GT:AD:DP:GQ:PL 0/1:345,131:478:99:703,0,7936 chrIV 601251 . T A 13311.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=538;Dels=0.00;FS=0.000;HaplotypeScore=28.3522;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.258;QD=24.74;ReadPosRankSum=1.719;SB=-4.453e+03 GT:AD:DP:GQ:PL 1/1:1,537:538:99:13311,1361,0 chrIV 601302 . T C 12595.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.532;DP=557;Dels=0.00;FS=12.854;HaplotypeScore=46.4427;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.379;QD=22.61;ReadPosRankSum=3.969;SB=-5.477e+03 GT:AD:DP:GQ:PL 1/1:7,550:557:99:12595,1295,0 chrIV 601371 . C T 21896.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=1000;DS;Dels=0.00;FS=3.289;HaplotypeScore=52.9898;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.118;QD=21.90;ReadPosRankSum=1.708;SB=-1.353e+04 GT:AD:DP:GQ:PL 1/1:1,995:1000:99:21896,2035,0 chrIV 601389 . A T 4393.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.302;DP=999;DS;Dels=0.00;FS=79.560;HaplotypeScore=62.1012;MLEAC=1;MLEAF=0.500;MQ=58.66;MQ0=0;MQRankSum=-0.650;QD=4.40;ReadPosRankSum=6.111;SB=-2.838e+03 GT:AD:DP:GQ:PL 0/1:604,394:999:99:4393,0,10017 chrIV 601422 . A G 20204.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.500;DP=982;DS;Dels=0.00;FS=8.295;HaplotypeScore=58.7157;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.035;QD=20.57;ReadPosRankSum=4.794;SB=-1.186e+04 GT:AD:DP:GQ:PL 1/1:8,970:982:99:20204,1964,0 chrIV 601524 . C T 14865.01 filter AC=2;AF=1.00;AN=2;DP=739;DS;Dels=0.00;FS=0.000;HaplotypeScore=66.0351;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.12;SB=-8.046e+03 GT:AD:DP:GQ:PL 1/1:0,734:739:99:14865,1395,0 chrIV 601683 . C T 5795.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.37;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,256:259:99:5795,586,0 chrIV 601830 . C T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=20.60;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4141,415,0 chrIV 601851 . C T 3382.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=19.78;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3382,351,0 chrIV 601857 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=20.06;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3243,336,0 chrIV 601952 . C G 3664.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=22.76;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3664,373,0 chrIV 601955 . G A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=22.01;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3565,367,0 chrIV 601976 . A G 3180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.4373;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=1.375;QD=20.78;ReadPosRankSum=2.941;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3213,325,0 chrIV 602153 . T C 3070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.560;QD=25.37;ReadPosRankSum=1.646;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3103,316,0 chrIV 602350 . C T 4191.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.53;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4191,406,0 chrIV 602645 . C T 2962 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.1641;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.10;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2995,309,0 chrIV 602876 . C T 2741 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.2783;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.04;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2774,274,0 chrIV 602949 . T A 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=119;Dels=0.00;FS=7.941;HaplotypeScore=20.4401;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.912;QD=22.32;ReadPosRankSum=2.305;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2689,265,0 chrIV 603005 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6787;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=25.25;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3308,337,0 chrIV 603320 . A G 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=116;Dels=0.00;FS=3.027;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.216;QD=24.37;ReadPosRankSum=2.407;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2860,289,0 chrIV 603685 . T C 4310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-0.281;QD=26.77;ReadPosRankSum=1.710;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:4310,442,0 chrIV 603888 . T C 4553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=196;Dels=0.01;FS=3.902;HaplotypeScore=9.4375;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.946;QD=23.23;ReadPosRankSum=1.714;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4553,460,0 chrIV 603899 . T C 4448.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.7500;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.69;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4448,457,0 chrIV 603991 . C A 4596.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.2851;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.71;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4596,451,0 chrIV 604016 . A G 5492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=226;Dels=0.00;FS=5.528;HaplotypeScore=8.0113;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-1.440;QD=24.30;ReadPosRankSum=1.670;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:5492,577,0 chrIV 604439 . G A 6121.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=15.0911;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.82;SB=-3.318e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:6121,607,0 chrIV 604670 . T C 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=193;Dels=0.00;FS=12.962;HaplotypeScore=16.3293;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.286;QD=21.54;ReadPosRankSum=2.901;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:4157,450,0 chrIV 605558 . T C 2944 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2977,309,0 chrIV 605615 . G C 3750.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3750,382,0 chrIV 605973 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.69;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2749,271,0 chrIV 605994 . T C 2399 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.99;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2432,249,0 chrIV 606952 . T G 2631 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.54;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2664,273,0 chrIV 607097 . A T 998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.147;DP=58;Dels=0.00;FS=2.861;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=61.16;MQ0=0;MQRankSum=-1.019;QD=17.21;ReadPosRankSum=2.364;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1031,108,0 chrIV 607227 . T G 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.010;QD=27.99;ReadPosRankSum=2.403;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:3000,298,0 chrIV 607313 . G A 2041 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=25.84;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2074,204,0 chrIV 607474 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.46;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2840,288,0 chrIV 607715 . A G 3447.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5627;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.29;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3447,358,0 chrIV 608333 . T C 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=5.686;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.485;QD=23.96;ReadPosRankSum=1.663;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2453,243,0 chrIV 608354 . G A 2365 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.42;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2398,246,0 chrIV 608390 . T C 1789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.433;DP=81;Dels=0.00;FS=4.461;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.663;QD=22.09;ReadPosRankSum=1.689;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1822,189,0 chrIV 608586 . T C 2930 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.48;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2963,306,0 chrIV 608921 . G A 2558 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2591,267,0 chrIV 609152 . T A 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=152;Dels=0.00;FS=2.567;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.477;QD=25.41;ReadPosRankSum=2.927;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3863,385,0 chrIV 611056 . A G 4839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.807;DP=189;Dels=0.00;FS=11.312;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.675;QD=25.60;ReadPosRankSum=3.757;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:5,184:189:99:4839,481,0 chrIV 611095 . A T 4336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.0514;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.748;QD=23.69;ReadPosRankSum=1.713;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4336,430,0 chrIV 611157 . A G 5119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=203;Dels=0.00;FS=2.931;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.454;QD=25.22;ReadPosRankSum=2.377;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:5119,517,0 chrIV 611625 . A G 3623.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3623,379,0 chrIV 612397 . C A 2629 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.12;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2662,265,0 chrIV 612573 . G A 3993.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.16;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3993,400,0 chrIV 614834 . A C 5412.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=16.8034;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.43;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5412,544,0 chrIV 615114 . C T 5134.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=16.7205;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.68;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5134,508,0 chrIV 615816 . C T 4009.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.7375;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.03;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:4009,400,0 chrIV 616169 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.96;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2778,274,0 chrIV 616559 . G A 4824.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.1043;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.13;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4824,481,0 chrIV 616624 . G T 4607.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.4282;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.36;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4607,460,0 chrIV 617842 . C T 5128.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.9278;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.42;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5128,508,0 chrIV 618461 . C T 3859.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3859,388,0 chrIV 619185 . T G 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=121;Dels=0.00;FS=3.680;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-1.703;QD=21.50;ReadPosRankSum=1.674;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2634,267,0 chrIV 619206 . G A 2575 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.11;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2608,258,0 chrIV 619621 . C T 5847.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.77;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5847,586,0 chrIV 620090 . T C 2257 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.27;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2290,237,0 chrIV 620108 . T C 2253 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=24.23;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2286,231,0 chrIV 621945 . C T 2076 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.40;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2109,207,0 chrIV 623653 . G A 3215 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.12;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3248,322,0 chrIV 623966 . C A 3167 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.18;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3200,333,0 chrIV 624163 . C T 4668.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.9286;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.83;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4668,466,0 chrIV 624733 . G T 2714 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.45;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2747,279,0 chrIV 624969 . T G 4947.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.31;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4947,511,0 chrIV 625173 . A G 3901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=195;Dels=0.00;FS=2.780;HaplotypeScore=11.9744;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.477;QD=20.01;ReadPosRankSum=2.322;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:3901,406,0 chrIV 625250 . C T 4106.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.59;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4106,415,0 chrIV 628602 . A G 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.517;QD=21.54;ReadPosRankSum=1.692;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3727,382,0 chrIV 628690 . A G 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=122;Dels=0.00;FS=2.820;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-1.623;QD=17.64;ReadPosRankSum=2.409;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2185,222,0 chrIV 629487 . G A 2599 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2632,261,0 chrIV 629532 . G C 2024 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.00;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2057,213,0 chrIV 629595 . T A 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.423;QD=25.09;ReadPosRankSum=1.701;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2843,294,0 chrIV 629725 . G A 2564 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.14;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2597,279,0 chrIV 630898 . A G 2785 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.4258;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=24.22;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2818,294,0 chrIV 634669 . A C 7570.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=15.3485;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.28;SB=-3.046e+03 GT:AD:DP:GQ:PL 1/1:0,287:288:99:7570,784,0 chrIV 636089 . C A 6513.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=15.8896;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.18;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:6513,640,0 chrIV 637011 . A C 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=122;Dels=0.00;FS=3.229;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.284;QD=21.18;ReadPosRankSum=1.079;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2617,270,0 chrIV 637211 . T C 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=2.874;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.996;QD=25.56;ReadPosRankSum=2.396;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3527,358,0 chrIV 637663 . A T 3365.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.14;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3365,337,0 chrIV 638340 . T A 2688 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2721,270,0 chrIV 638634 . G A 4878.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.8712;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=25.27;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4878,478,0 chrIV 638815 . C T 9596.01 filter AC=2;AF=1.00;AN=2;DP=373;Dels=0.00;FS=0.000;HaplotypeScore=15.1519;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=25.73;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:0,372:373:99:9596,965,0 chrIV 643760 . C T 3368.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.71;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3368,331,0 chrIV 644629 . T A 3947.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3947,397,0 chrIV 645268 . C G 1644 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;QD=19.81;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1677,174,0 chrIV 645352 . C T 547 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;FS=15.682;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=29.25;MQ0=0;MQRankSum=-1.733;QD=14.78;ReadPosRankSum=1.452;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:1,36:37:63:580,63,0 chrIV 651836 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.42;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3082,313,0 chrIV 653246 . T C 3166 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.11;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3199,330,0 chrIV 653336 . C T 1610 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.04;FS=0.000;HaplotypeScore=20.8999;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=13.76;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:1643,159,0 chrIV 654943 . T C 4550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=201;Dels=0.00;FS=7.171;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.217;QD=22.64;ReadPosRankSum=2.326;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:2,196:201:99:4550,466,0 chrIV 657366 . G A 2193 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.71;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2226,219,0 chrIV 657681 . T A 2215 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2248,234,0 chrIV 662378 . T C 4005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.245;QD=23.56;ReadPosRankSum=1.691;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4005,415,0 chrIV 662835 . T C 2514 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2547,258,0 chrIV 664444 . T A 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.2530;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.111;QD=24.40;ReadPosRankSum=0.924;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3538,366,0 chrIV 664509 . A T 4517.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.4300;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.68;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4517,445,0 chrIV 666471 . C T 4852.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.37;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4852,487,0 chrIV 668858 . C T 403 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:42:436,42,0 chrIV 670921 . C G 4366.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,168:172:99:4366,460,0 chrIV 676128 . G T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3979,403,0 chrIV 678773 . T C 5449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=217;Dels=0.00;FS=3.133;HaplotypeScore=9.8454;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.235;QD=25.11;ReadPosRankSum=1.684;SB=-3.060e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:5449,541,0 chrIV 680091 . C A 2455 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.16;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2488,255,0 chrIV 680244 . G A 3516.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=24.25;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3516,372,0 chrIV 680252 . C T 3472.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.94;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3472,352,0 chrIV 681251 . G A 5017.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.1410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.13;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5017,499,0 chrIV 681304 . G A 4469.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=20.0444;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.03;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4469,439,0 chrIV 682178 . C T 3541.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.66;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3541,358,0 chrIV 683918 . C T 2230 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2585;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.24;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2263,225,0 chrIV 685659 . G A 5151.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.2250;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.42;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:5151,532,0 chrIV 689618 . A G 5620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.313;DP=226;Dels=0.00;FS=12.878;HaplotypeScore=18.5170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.182;QD=24.87;ReadPosRankSum=3.414;SB=-2.935e+03 GT:AD:DP:GQ:PL 1/1:4,221:226:99:5620,574,0 chrIV 690684 . A G 2622 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.7227;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.46;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2655,279,0 chrIV 691254 . C T 1178 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.8206;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.42;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1211,132,0 chrIV 691402 . T A 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.778;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=6.2821;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.485;QD=3.21;ReadPosRankSum=2.758;SB=-3.021e+01 GT:AD:DP:GQ:PL 1/1:4,10:14:9:77,9,0 chrIV 691713 . C T 5230.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.51;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5230,508,0 chrIV 691930 . T A 4697.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.84;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4697,490,0 chrIV 692045 . C G 6154.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=23.4718;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.33;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:6154,625,0 chrIV 692593 . A G 5321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=226;Dels=0.00;FS=3.027;HaplotypeScore=12.1812;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.860;QD=23.54;ReadPosRankSum=2.406;SB=-3.012e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:5321,550,0 chrIV 694033 . T C 5791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=232;Dels=0.00;FS=3.105;HaplotypeScore=12.5021;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.967;QD=24.96;ReadPosRankSum=1.717;SB=-3.163e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:5791,601,0 chrIV 695620 . G A 3803.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3803,396,0 chrIV 696655 . C G 4525.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4525,472,0 chrIV 700036 . A C 4399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=4.771;HaplotypeScore=13.4820;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.259;QD=25.14;ReadPosRankSum=1.692;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4399,442,0 chrIV 702575 . T A 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=3.372;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.143;QD=23.09;ReadPosRankSum=1.697;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2365,243,0 chrIV 702974 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.77;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2807,280,0 chrIV 703386 . G C 5425.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=16.7465;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.89;SB=-3.098e+03 GT:AD:DP:GQ:PL 1/1:0,234:237:99:5425,556,0 chrIV 703521 . G A 7889.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=13.1588;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=26.21;SB=-3.762e+03 GT:AD:DP:GQ:PL 1/1:0,298:301:99:7889,793,0 chrIV 706032 . T C 7224.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=16.5420;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.61;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:0,304:306:99:7224,730,0 chrIV 706692 . T A 7575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=298;Dels=0.00;FS=7.224;HaplotypeScore=20.3274;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.667;QD=25.42;ReadPosRankSum=2.417;SB=-3.725e+03 GT:AD:DP:GQ:PL 1/1:2,296:298:99:7575,751,0 chrIV 707616 . G A 5575.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.55;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5575,556,0 chrIV 707796 . G A 5838.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.3879;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.06;SB=-3.301e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5838,577,0 chrIV 708489 . C G 5130.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.8639;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.97;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:5130,529,0 chrIV 710130 . C T 5059.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.17;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:5059,502,0 chrIV 710371 . A G 5972.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.54;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,220:225:99:5972,601,0 chrIV 710996 . T C 2543 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.22;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2576,264,0 chrIV 711314 . T C 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=117;Dels=0.00;FS=10.007;HaplotypeScore=6.3930;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.753;QD=24.37;ReadPosRankSum=2.407;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2884,297,0 chrIV 713335 . T C 4302.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=25.31;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:4302,436,0 chrIV 713336 . T A 4381.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=26.08;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4381,436,0 chrIV 713520 . A G 4878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=226;Dels=0.00;FS=3.027;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.722;QD=21.58;ReadPosRankSum=2.428;SB=-2.962e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:4878,517,0 chrIV 713546 . G T 4046.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.74;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4046,409,0 chrIV 713555 . A G 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=195;Dels=0.00;FS=6.080;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.536;QD=20.29;ReadPosRankSum=2.870;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:3,190:195:99:3956,397,0 chrIV 713693 . T C 4242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.664;DP=208;Dels=0.00;FS=11.019;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.020;QD=20.39;ReadPosRankSum=2.907;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:3,203:208:99:4242,430,0 chrIV 714255 . T C 4949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=3.078;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.844;QD=25.25;ReadPosRankSum=1.714;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4949,511,0 chrIV 714581 . C T 5095.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.10;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5095,514,0 chrIV 714663 . A T 4836.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=26.00;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4836,487,0 chrIV 714714 . C T 6308.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=9.3411;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.85;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:6308,652,0 chrIV 717377 . G C 2534 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.91;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2567,270,0 chrIV 717634 . C A 4103.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.1616;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.17;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:4103,406,0 chrIV 718467 . G A 3189 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3222,316,0 chrIV 719380 . G A 3752.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=24.52;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3752,385,0 chrIV 719391 . T C 3429.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.86;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3429,346,0 chrIV 719554 . C T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.99;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3622,361,0 chrIV 719695 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2998;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.27;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2921,297,0 chrIV 719745 . A G 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=3.177;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.111;QD=24.20;ReadPosRankSum=1.699;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2622,264,0 chrIV 719860 . C G 3772.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.15;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3772,388,0 chrIV 719959 . G A 2860 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2893,286,0 chrIV 720061 . A G 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=150;Dels=0.00;FS=2.776;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.856;QD=24.45;ReadPosRankSum=2.400;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3667,382,0 chrIV 720439 . T A 1942 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.04;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1975,204,0 chrIV 720440 . C T 1911 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=18.92;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1944,201,0 chrIV 720645 . A G 1762 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.81;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1795,183,0 chrIV 720763 . G T 861 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=17.57;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:90:894,90,0 chrIV 720993 . C G 877 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=28.29;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:90:910,90,0 chrIV 721110 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=23.14;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2694,270,0 chrIV 721119 . C T 2629 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.55;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2662,276,0 chrIV 721283 . A G 5190.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.1970;MLEAC=2;MLEAF=1.00;MQ=61.18;MQ0=0;QD=26.48;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5190,541,0 chrIV 721941 . G C 5548.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.71;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5548,574,0 chrIV 722011 . C T 4950.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.68;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4950,520,0 chrIV 722058 . C T 3817.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.99;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3817,382,0 chrIV 722085 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.256;QD=23.28;ReadPosRankSum=2.343;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3246,328,0 chrIV 722265 . A G 714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.887;DP=45;Dels=0.00;FS=8.346;HaplotypeScore=14.4027;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=1.648;QD=15.87;ReadPosRankSum=1.056;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:1,40:45:78:747,78,0 chrIV 722306 . G A 1601 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.20;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,66:69:99:1634,159,0 chrIV 722348 . A G 1610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=12.937;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.029;QD=27.29;ReadPosRankSum=1.674;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1643,168,0 chrIV 722407 . A G 1589 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.93;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1622,162,0 chrIV 722460 . G A 2987 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=26.67;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:3020,295,0 chrIV 722585 . C T 4010.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.9189;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=25.87;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:4010,394,0 chrIV 722672 . T C 4102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=172;Dels=0.00;FS=3.024;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.467;QD=23.85;ReadPosRankSum=2.378;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:4102,418,0 chrIV 722772 . T C 2040 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.43;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2073,219,0 chrIV 722776 . A G 2051 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.72;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2084,213,0 chrIV 722840 . A C 2279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5084;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=1.145;QD=19.31;ReadPosRankSum=1.703;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2312,240,0 chrIV 722940 . C T 434 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=15.2310;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=8.86;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:48:467,48,0 chrIV 723133 . G A 4904.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=27.09;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4904,511,0 chrIV 723157 . C T 5497.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=22.35;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5497,550,0 chrIV 723163 . G A 5290.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=5.8757;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.66;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,252:256:99:5290,556,0 chrIV 723345 . G A 8083.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=24.9252;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=24.35;SB=-4.232e+03 GT:AD:DP:GQ:PL 1/1:0,331:332:99:8083,797,0 chrIV 723847 . C T 5782.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=22.9366;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.14;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5782,580,0 chrIV 724081 . G A 8678.01 PASS AC=2;AF=1.00;AN=2;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=22.1716;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.52;SB=-4.773e+03 GT:AD:DP:GQ:PL 1/1:0,337:340:99:8678,866,0 chrIV 724549 . A C 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.450;DP=156;Dels=0.00;FS=3.363;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.090;QD=25.04;ReadPosRankSum=0.562;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3907,368,0 chrIV 724570 . A G 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=170;Dels=0.00;FS=6.043;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.054;QD=23.94;ReadPosRankSum=2.959;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:4070,421,0 chrIV 724610 . C T 4808.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.5974;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.79;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4808,481,0 chrIV 725095 . G A 5123.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:5123,520,0 chrIV 725245 . C T 5334.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.29;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5334,535,0 chrIV 725461 . T C 5348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=212;Dels=0.00;FS=3.009;HaplotypeScore=9.9028;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.239;QD=25.23;ReadPosRankSum=2.415;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:2,209:212:99:5348,550,0 chrIV 726762 . C G 2937 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.68;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2970,306,0 chrIV 727008 . T C 3561.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3561,372,0 chrIV 727318 . T A 4316.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4316,433,0 chrIV 727626 . A G 5269.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.949;QD=26.21;ReadPosRankSum=1.697;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:5269,538,0 chrIV 727685 . A G 4909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=199;Dels=0.00;FS=3.032;HaplotypeScore=14.9043;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;MQRankSum=1.271;QD=24.67;ReadPosRankSum=2.375;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4909,517,0 chrIV 728391 . C A 5554.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.6413;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.09;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5554,550,0 chrIV 728470 . T C 3885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=3.066;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.067;QD=24.75;ReadPosRankSum=1.688;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3885,397,0 chrIV 728817 . A C 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.7753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.924;QD=23.43;ReadPosRankSum=1.703;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2845,288,0 chrIV 728918 . C T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.14;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3609,352,0 chrIV 728966 . A C 3071 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3104,319,0 chrIV 729030 . G A 2778 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2811,277,0 chrIV 729266 . T C 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=134;Dels=0.00;FS=4.078;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.300;QD=24.69;ReadPosRankSum=1.680;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3309,337,0 chrIV 729398 . T C 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-1.552;QD=24.25;ReadPosRankSum=1.687;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3735,382,0 chrIV 729422 . G A 3824.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.90;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3824,400,0 chrIV 729752 . T C 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=158;Dels=0.00;FS=6.995;HaplotypeScore=8.0792;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.937;QD=23.30;ReadPosRankSum=2.355;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3682,376,0 chrIV 730077 . A G 3762.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.5000;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=23.08;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3762,379,0 chrIV 730085 . A G 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.338;QD=21.27;ReadPosRankSum=1.542;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3489,363,0 chrIV 730340 . G A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.60;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:4035,400,0 chrIV 730611 . A C 3809.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.45;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3809,376,0 chrIV 730704 . G A 2982 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.2486;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.48;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3015,309,0 chrIV 730734 . A G 2799 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.04;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2832,291,0 chrIV 731928 . T C 2640 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.44;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2673,273,0 chrIV 732240 . G A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=25.91;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3420,334,0 chrIV 732272 . T C 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=137;Dels=0.00;FS=9.822;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.449;QD=22.28;ReadPosRankSum=2.890;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:3085,321,0 chrIV 732994 . C G 3058 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=14.9624;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.71;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,124:129:99:3091,327,0 chrIV 733047 . C T 4504.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.34;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4504,451,0 chrIV 733147 . G T 4900.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.65;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4900,487,0 chrIV 733614 . G C 2689 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2722,282,0 chrIV 733663 . C T 3574.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.82;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3574,355,0 chrIV 734411 . T C 4091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.8213;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=1.234;QD=24.95;ReadPosRankSum=1.710;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,159:164:99:4091,415,0 chrIV 734832 . G A 2599 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.79;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2632,294,0 chrIV 734833 . A T 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=128;Dels=0.00;FS=2.976;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=1.009;QD=20.56;ReadPosRankSum=2.354;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2665,294,0 chrIV 735360 . A G 4313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.219;QD=26.46;ReadPosRankSum=1.711;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:4313,439,0 chrIV 735402 . C T 4490.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.6283;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.22;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4490,448,0 chrIV 735567 . A T 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=146;Dels=0.00;FS=3.027;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.338;QD=23.51;ReadPosRankSum=2.416;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3433,343,0 chrIV 735825 . A G 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=130;Dels=0.00;FS=11.635;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.079;QD=23.98;ReadPosRankSum=2.914;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:3,125:130:99:3150,327,0 chrIV 736692 . C T 5244.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=5.7702;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.62;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5244,520,0 chrIV 736713 . G A 4503.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.75;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4503,460,0 chrIV 736769 . G A 4353.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.8086;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.03;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4353,430,0 chrIV 736908 . T C 4099.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.54;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4099,421,0 chrIV 738672 . A G 2736 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2769,288,0 chrIV 738776 . A G 4269.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=25.87;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4269,430,0 chrIV 739030 . T G 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=4.237;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.133;QD=22.82;ReadPosRankSum=1.705;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3023,315,0 chrIV 739050 . C T 2545 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=18.44;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2578,270,0 chrIV 739056 . G A 2753 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.02;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2786,277,0 chrIV 739713 . A G 5003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=3.075;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=-1.664;QD=24.40;ReadPosRankSum=1.698;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:5003,502,0 chrIV 740178 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.8048;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.25;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3185,319,0 chrIV 740249 . T A 2328 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.77;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2361,237,0 chrIV 740275 . T A 2576 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=25.50;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2609,253,0 chrIV 740635 . T G 4611.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.95;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4611,460,0 chrIV 740795 . A G 4164.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=15.3177;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.79;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4164,424,0 chrIV 741444 . C G 3831.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.4904;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.50;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,156:163:99:3831,394,0 chrIV 741803 . G C 1308 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1341,141,0 chrIV 741894 . A G 680 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.431;QD=14.78;ReadPosRankSum=1.657;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,45:46:75:713,75,0 chrIV 742032 . G A 4693.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.7740;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=28.79;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4693,460,0 chrIV 742728 . C T 5194.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.8247;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-3.006e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5194,544,0 chrIV 743414 . A T 5681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=226;Dels=0.00;FS=3.029;HaplotypeScore=15.2051;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.944;QD=25.14;ReadPosRankSum=2.406;SB=-3.224e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:5681,559,0 chrIV 743645 . C T 4510.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.4082;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.68;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4510,448,0 chrIV 743850 . T C 2518 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=26.23;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2551,258,0 chrIV 744041 . C T 1770 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=24.25;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1803,183,0 chrIV 744157 . G A 1313 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=21.18;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1346,141,0 chrIV 744159 . T C 1300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=1.466;QD=20.00;ReadPosRankSum=1.679;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1333,141,0 chrIV 744174 . T C 1595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;MQRankSum=0.254;QD=21.27;ReadPosRankSum=1.640;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1628,165,0 chrIV 744206 . A G 1654 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;QD=18.58;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1687,171,0 chrIV 744218 . G A 2173 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=21.30;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2206,222,0 chrIV 744290 . T C 4092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;MQRankSum=-0.188;QD=24.65;ReadPosRankSum=1.649;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4092,418,0 chrIV 744306 . A C 3639.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=22.89;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3639,370,0 chrIV 744309 . T C 3562.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=21.59;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3562,375,0 chrIV 744344 . G A 2981 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=21.60;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3014,312,0 chrIV 744456 . G T 4335.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=21.57;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4335,451,0 chrIV 744457 . A G 4212.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=20.96;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4212,444,0 chrIV 744475 . T A 4541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=219;Dels=0.00;FS=2.920;HaplotypeScore=10.6510;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=-1.127;QD=20.74;ReadPosRankSum=2.382;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:4541,446,0 chrIV 744529 . A G 3769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=200;Dels=0.01;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;MQRankSum=1.347;QD=18.85;ReadPosRankSum=1.715;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:3769,385,0 chrIV 744534 . A G 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=189;Dels=0.00;FS=3.030;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=-0.032;QD=19.21;ReadPosRankSum=2.424;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3631,378,0 chrIV 745766 . G A 4767.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.3808;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.49;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4767,466,0 chrIV 745886 . C T 4452.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.20;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4452,457,0 chrIV 745916 . C T 4577.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.72;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4577,478,0 chrIV 745998 . A T 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=147;Dels=0.00;FS=3.611;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.507;QD=25.71;ReadPosRankSum=1.709;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3780,376,0 chrIV 746167 . C T 3107 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.72;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3140,310,0 chrIV 746186 . C T 3538.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9067;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=25.09;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3538,349,0 chrIV 746550 . A C 4332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=3.680;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.206;QD=25.79;ReadPosRankSum=1.691;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4332,439,0 chrIV 747029 . T C 4745.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.01;FS=0.000;HaplotypeScore=28.9450;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.45;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:0,237:242:99:4745,490,0 chrIV 747352 . G T 4291.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=24.66;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4291,436,0 chrIV 747544 . G A 219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=6.681;DP=155;Dels=0.00;FS=6.255;HaplotypeScore=314.1152;MLEAC=2;MLEAF=1.00;MQ=33.02;MQ0=0;MQRankSum=0.731;QD=1.41;ReadPosRankSum=8.596;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:31,124:155:27:252,27,0 chrIV 747550 . G A 552 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.73;MQ0=0;QD=4.15;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:66:585,66,0 chrIV 747674 . A C 4679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.9391;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-1.550;QD=20.34;ReadPosRankSum=1.626;SB=-2.894e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:4679,472,0 chrIV 747733 . T C 4897.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=43.5983;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=22.67;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4897,502,0 chrIV 748054 . C T 4242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.341;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=16.4598;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.067;QD=23.70;ReadPosRankSum=0.186;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:4242,402,0 chrIV 748129 . G A 4645.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.1389;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.52;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4645,475,0 chrIV 748297 . T C 1903 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.9170;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.21;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1936,198,0 chrIV 748461 . G A 209.03 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=16.08;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:24:242,24,0 chrIV 748463 . T A 179.06 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=14.92;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:21:212,21,0 chrIV 748518 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=1.9916;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=4.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:49,6,0 chrIV 749110 . T A 5765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.641;DP=235;Dels=0.00;FS=12.132;HaplotypeScore=17.9095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.283;QD=24.53;ReadPosRankSum=3.820;SB=-3.306e+03 GT:AD:DP:GQ:PL 1/1:5,230:235:99:5765,549,0 chrIV 749263 . C T 7843.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=16.7998;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.86;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:0,291:292:99:7843,781,0 chrIV 749441 . C T 6103.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=22.2673;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=22.44;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,269:272:99:6103,634,0 chrIV 749759 . A G 4330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.652;DP=185;Dels=0.00;FS=12.278;HaplotypeScore=10.7133;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.443;QD=23.41;ReadPosRankSum=3.780;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:5,179:185:99:4330,454,0 chrIV 749852 . G A 4057.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4057,391,0 chrIV 749897 . T A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.8613;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4204,424,0 chrIV 750050 . A G 3298.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.39;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3298,334,0 chrIV 750684 . A G 3549.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=24.99;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3549,364,0 chrIV 750696 . A T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=23.89;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3273,328,0 chrIV 750698 . G A 3380.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=25.22;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3380,334,0 chrIV 750778 . T C 4131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=170;Dels=0.00;FS=3.035;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.596;QD=24.30;ReadPosRankSum=2.391;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:2,165:170:99:4131,427,0 chrIV 751203 . C A 4424.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.33;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4424,436,0 chrIV 751285 . A G 4759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=206;Dels=0.00;FS=3.271;HaplotypeScore=7.3089;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.682;QD=23.10;ReadPosRankSum=1.278;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4759,499,0 chrIV 751326 . A G 4613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=194;Dels=0.00;FS=3.388;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.505;QD=23.78;ReadPosRankSum=1.696;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:4613,478,0 chrIV 751490 . G A 4430.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.2806;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.07;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4430,460,0 chrIV 751891 . A G 4903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.5068;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.018;QD=23.13;ReadPosRankSum=2.426;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:2,209:212:99:4903,487,0 chrIV 752100 . C G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.26;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3263,339,0 chrIV 753137 . T A 4025.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.8518;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=26.83;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4025,400,0 chrIV 753357 . A G 935 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.37;SB=-6.601e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:99:968,99,0 chrIV 753375 . G T 821 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=27.37;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:84:854,84,0 chrIV 755101 . T C 2762 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.23;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2795,294,0 chrIV 755257 . G C 4329.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.72;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4329,445,0 chrIV 755654 . G A 5110.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.68;SB=-3.002e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5110,502,0 chrIV 755785 . A G 4754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.120;QD=23.42;ReadPosRankSum=1.698;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4754,484,0 chrIV 755819 . A G 3922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.1781;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.942;QD=22.67;ReadPosRankSum=1.712;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3922,409,0 chrIV 756842 . T C 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=92;Dels=0.00;FS=2.969;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.665;QD=23.13;ReadPosRankSum=2.314;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:2,89:92:99:2161,219,0 chrIV 756915 . C T 2827 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.18;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2860,280,0 chrIV 757202 . A G 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.721;DP=120;Dels=0.00;FS=6.124;HaplotypeScore=7.1580;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;MQRankSum=-0.890;QD=22.79;ReadPosRankSum=1.348;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:3,116:120:99:2768,288,0 chrIV 757409 . A T 2399 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.71;MQ0=0;QD=24.73;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2432,243,0 chrIV 757412 . G A 2134 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;QD=22.70;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2167,225,0 chrIV 757414 . A C 1954 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=88;Dels=0.00;FS=5.520;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.99;MQ0=0;MQRankSum=-2.805;QD=22.20;ReadPosRankSum=2.828;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:3,85:88:99:1987,204,0 chrIV 757430 . T C 1948 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.35;MQ0=0;QD=20.95;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1981,207,0 chrIV 757452 . T C 1749 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.125;DP=105;Dels=0.00;FS=64.408;HaplotypeScore=7.4025;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=9;MQRankSum=3.675;QD=16.66;ReadPosRankSum=3.292;SB=-4.001e+01 GT:AD:DP:GQ:PL 1/1:14,90:105:99:1782,134,0 chrIV 757454 . A G 1703 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.335;DP=106;Dels=0.00;FS=47.172;HaplotypeScore=3.7838;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=11;MQRankSum=1.106;QD=16.07;ReadPosRankSum=4.349;SB=-3.901e+01 GT:AD:DP:GQ:PL 1/1:17,88:106:99:1736,131,0 chrIV 757478 . C A 1812 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=129;Dels=0.00;FS=75.751;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.66;MQ0=31;MQRankSum=4.008;QD=14.05;ReadPosRankSum=-0.482;SB=-4.101e+01 GT:AD:DP:GQ:PL 1/1:32,97:129:99:1845,119,0 chrIV 757506 . A G 1763 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.7003;MLEAC=2;MLEAF=1.00;MQ=22.16;MQ0=47;MQRankSum=1.338;QD=13.06;ReadPosRankSum=1.693;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:1,134:135:99:1796,189,0 chrIV 757508 . G T 1563 filter AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.9063;MLEAC=2;MLEAF=1.00;MQ=22.01;MQ0=49;QD=11.49;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,118:136:99:1596,165,0 chrIV 757538 . A G 775 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.92;MQ0=66;MQRankSum=-1.485;QD=6.35;ReadPosRankSum=1.670;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:1,121:122:84:808,84,0 chrIV 757558 . A G 438 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.09;MQ0=46;MQRankSum=-1.333;QD=4.47;ReadPosRankSum=1.666;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:44,53:98:51:471,51,0 chrIV 757564 . C A 217.01 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.68;MQ0=39;QD=2.61;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:27:250,27,0 chrIV 757578 . G C 107.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.696;DP=64;Dels=0.00;FS=12.661;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.32;MQ0=34;MQRankSum=2.420;QD=1.68;ReadPosRankSum=-2.834;SB=-1.183e+02 GT:AD:DP:GQ:PL 1/1:35,28:64:15:140,15,0 chrIV 757622 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=21.77;MQ0=4;MQRankSum=1.275;QD=0.19;ReadPosRankSum=3.368;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:4,100:104:6:51,6,0 chrIV 757631 . G C 44.97 filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=22.40;MQ0=5;QD=0.39;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,103:115:9:77,9,0 chrIV 757644 . T C 55.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;DP=138;Dels=0.00;FS=34.438;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=22.85;MQ0=10;MQRankSum=2.636;QD=0.40;ReadPosRankSum=1.481;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,117:138:62:85,0,62 chrIV 757646 . A G 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.679;DP=142;Dels=0.00;FS=63.385;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=22.89;MQ0=10;MQRankSum=2.871;QD=0.32;ReadPosRankSum=2.014;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:23,119:142:76:76,0,133 chrIV 757670 . C A 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.862;DP=150;Dels=0.00;FS=76.488;HaplotypeScore=5.3546;MLEAC=1;MLEAF=0.500;MQ=21.69;MQ0=22;MQRankSum=2.011;QD=0.25;ReadPosRankSum=1.448;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,100:150:67:67,0,414 chrIV 757681 . G A 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.278;DP=144;Dels=0.00;FS=50.884;HaplotypeScore=2.9785;MLEAC=1;MLEAF=0.500;MQ=21.82;MQ0=21;MQRankSum=-2.190;QD=0.40;ReadPosRankSum=0.626;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,16:144:87:87,0,420 chrIV 757698 . A G 629 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=20.85;MQ0=20;MQRankSum=-1.732;QD=5.42;ReadPosRankSum=1.696;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:72:662,72,0 chrIV 757700 . G A,T 519.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.592;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.28;MQ0=21;MQRankSum=-1.732;QD=4.29;ReadPosRankSum=1.592;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/2:1,45,75:121:99:579,162,111,417,0,396 chrIV 757730 . A G 1311 filter AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=21.03;MQ0=39;QD=8.80;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:1344,147,0 chrIV 757736 . T C 325.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.775;DP=142;Dels=0.00;FS=35.927;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=20.12;MQ0=43;MQRankSum=-1.777;QD=2.29;ReadPosRankSum=2.523;SB=-7.501e+01 GT:AD:DP:GQ:PL 0/1:67,74:142:99:355,0,582 chrIV 757750 . A G 1230 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.095;DP=151;Dels=0.00;FS=2.343;HaplotypeScore=1.9692;MLEAC=2;MLEAF=1.00;MQ=21.15;MQ0=49;MQRankSum=-0.026;QD=8.15;ReadPosRankSum=2.439;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:10,133:151:59:1263,59,0 chrIV 757756 . C A 1549 filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=21.58;MQ0=52;QD=9.68;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,157:160:99:1582,165,0 chrIV 757824 . T C 6083.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.315;DP=426;Dels=0.00;FS=8.145;HaplotypeScore=38.7074;MLEAC=2;MLEAF=1.00;MQ=27.35;MQ0=35;MQRankSum=-1.447;QD=14.28;ReadPosRankSum=3.426;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:4,421:426:99:6083,616,0 chrIV 757894 . G A 1131.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.909;DP=335;Dels=0.00;FS=10.495;HaplotypeScore=11.2332;MLEAC=1;MLEAF=0.500;MQ=27.86;MQ0=25;MQRankSum=2.368;QD=3.38;ReadPosRankSum=2.032;SB=-4.460e+02 GT:AD:DP:GQ:PL 0/1:212,123:335:99:1161,0,2257 chrIV 757913 . G A 3410.01 filter AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=25.66;MQ0=23;QD=12.01;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,226:284:99:3410,389,0 chrIV 757937 . T C 1460 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=190;Dels=0.00;FS=2.957;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=19.07;MQ0=34;MQRankSum=-2.000;QD=7.68;ReadPosRankSum=2.417;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:2,185:190:99:1493,179,0 chrIV 757943 . A G 1450 filter AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=19.01;MQ0=35;QD=8.24;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:1483,176,0 chrIV 757949 . T C 73.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;DP=188;Dels=0.00;FS=23.456;HaplotypeScore=8.8522;MLEAC=1;MLEAF=0.500;MQ=20.03;MQ0=36;MQRankSum=2.313;QD=0.39;ReadPosRankSum=-1.768;SB=-1.170e+02 GT:AD:DP:GQ:PL 0/1:136,52:188:99:103,0,1152 chrIV 757961 . T C 2068 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.268;DP=204;Dels=0.00;FS=9.184;HaplotypeScore=13.4398;MLEAC=2;MLEAF=1.00;MQ=21.55;MQ0=31;MQRankSum=-2.641;QD=10.14;ReadPosRankSum=3.409;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:4,200:204:99:2101,243,0 chrIV 758027 . A T 2078 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.503;DP=173;Dels=0.00;FS=9.788;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=22.82;MQ0=29;MQRankSum=4.979;QD=12.01;ReadPosRankSum=5.453;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:23,150:173:99:2111,198,0 chrIV 758042 . C T 1425.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.991;DP=191;Dels=0.00;FS=4.266;HaplotypeScore=17.6187;MLEAC=1;MLEAF=0.500;MQ=21.26;MQ0=30;MQRankSum=5.489;QD=7.46;ReadPosRankSum=5.864;SB=-4.160e+02 GT:AD:DP:GQ:PL 0/1:61,130:191:31:1455,0,31 chrIV 758057 . T C 356.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.040;DP=185;Dels=0.00;FS=16.354;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=21.10;MQ0=28;MQRankSum=-4.004;QD=1.92;ReadPosRankSum=-2.286;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:107,77:185:99:386,0,1169 chrIV 758061 . G A 378.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;DP=172;Dels=0.00;FS=15.786;HaplotypeScore=7.2281;MLEAC=1;MLEAF=0.500;MQ=21.85;MQ0=19;MQRankSum=-4.575;QD=2.20;ReadPosRankSum=0.097;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:95,77:172:99:408,0,1156 chrIV 758070 . T C 450.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.242;DP=181;Dels=0.00;FS=3.537;HaplotypeScore=11.2150;MLEAC=1;MLEAF=0.500;MQ=22.10;MQ0=16;MQRankSum=-4.604;QD=2.49;ReadPosRankSum=5.717;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:93,83:181:99:480,0,1108 chrIV 758072 . A G 457.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.024;DP=183;Dels=0.00;FS=21.619;HaplotypeScore=9.6923;MLEAC=1;MLEAF=0.500;MQ=21.35;MQ0=19;MQRankSum=-4.195;QD=2.50;ReadPosRankSum=6.005;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:91,89:183:99:487,0,1076 chrIV 758089 . A T 545.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.929;DP=240;Dels=0.00;FS=23.417;HaplotypeScore=89.6138;MLEAC=1;MLEAF=0.500;MQ=19.91;MQ0=19;MQRankSum=1.391;QD=2.27;ReadPosRankSum=6.568;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,99:240:99:575,0,913 chrIV 758096 . A C 1125.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;DP=246;Dels=0.00;FS=221.785;HaplotypeScore=48.4080;MLEAC=1;MLEAF=0.500;MQ=19.51;MQ0=17;MQRankSum=4.202;QD=4.57;ReadPosRankSum=7.807;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:108,138:246:99:1155,0,709 chrIV 758107 . G A 316.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.277;DP=260;Dels=0.00;FS=39.869;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=18.96;MQ0=25;MQRankSum=4.016;QD=1.22;ReadPosRankSum=0.325;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:215,45:260:99:346,0,1691 chrIV 758124 . A G 2598 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.795;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=7.8376;MLEAC=2;MLEAF=1.00;MQ=19.94;MQ0=22;MQRankSum=-0.691;QD=10.74;ReadPosRankSum=4.761;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:9,232:242:99:2631,276,0 chrIV 758126 . G A,T 2305.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.393;DP=237;Dels=0.00;FS=10.670;HaplotypeScore=1.9601;MLEAC=1,1;MLEAF=0.500,0.500;MQ=20.08;MQ0=21;MQRankSum=-1.949;QD=9.73;ReadPosRankSum=2.336;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/2:2,47,188:237:99:2365,1757,1679,608,0,410 chrIV 758156 . A G 3917.01 filter AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=24;QD=13.70;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:1,284:286:99:3917,393,0 chrIV 758162 . C T 120.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;DP=274;Dels=0.00;FS=92.332;HaplotypeScore=8.8968;MLEAC=1;MLEAF=0.500;MQ=22.56;MQ0=22;MQRankSum=-1.208;QD=0.44;ReadPosRankSum=3.559;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:229,45:274:99:150,0,2891 chrIV 758182 . C A 3282.01 filter AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=20;QD=16.74;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3282,324,0 chrIV 758219 . A T 1530.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.206;DP=120;Dels=0.00;FS=59.383;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=26.56;MQ0=15;MQRankSum=4.018;QD=12.75;ReadPosRankSum=0.272;SB=-5.890e+02 GT:AD:DP:GQ:PL 0/1:32,88:120:99:1560,0,116 chrIV 758220 . C A 64.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;DP=114;Dels=0.00;FS=49.748;HaplotypeScore=10.2529;MLEAC=1;MLEAF=0.500;MQ=27.01;MQ0=14;MQRankSum=-1.618;QD=0.56;ReadPosRankSum=1.021;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,27:114:94:94,0,1497 chrIV 758222 . A G 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.033;DP=110;Dels=0.00;FS=36.906;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=27.02;MQ0=14;MQRankSum=-0.664;QD=0.34;ReadPosRankSum=4.498;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,17:110:67:67,0,1432 chrIV 758224 . C A 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.443;DP=96;Dels=0.00;FS=44.532;HaplotypeScore=8.7809;MLEAC=1;MLEAF=0.500;MQ=28.29;MQ0=12;MQRankSum=-0.894;QD=0.48;ReadPosRankSum=4.232;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,17:96:76:76,0,1349 chrIV 758240 . T C 350 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.57;MQ0=16;QD=8.97;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:48:383,48,0 chrIV 758249 . T C 213 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.744;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.80;MQ0=23;MQRankSum=1.488;QD=5.76;ReadPosRankSum=-1.488;SB=-6.500e+01 GT:AD:DP:GQ:PL 1/1:1,36:37:30:246,30,0 chrIV 758253 . G A 182.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.05;MQ0=26;MQRankSum=1.448;QD=4.79;ReadPosRankSum=-1.738;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:1,37:38:24:215,24,0 chrIV 758281 . A T 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=12.86;MQ0=24;MQRankSum=0.722;QD=1.72;ReadPosRankSum=-1.182;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,27:46:90:109,0,90 chrIV 758306 . A G 198 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.12;MQ0=18;QD=4.13;SB=-1.518e-02 GT:AD:DP:GQ:PL 1/1:1,47:48:30:231,30,0 chrIV 758310 . T C 199 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=48;Dels=0.00;FS=14.914;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=12.21;MQ0=17;MQRankSum=0.391;QD=4.15;ReadPosRankSum=1.621;SB=-1.518e-02 GT:AD:DP:GQ:PL 1/1:1,47:48:30:232,30,0 chrIV 758318 . A T 119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;DP=54;Dels=0.00;FS=5.509;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=12.58;MQ0=22;MQRankSum=0.042;QD=2.20;ReadPosRankSum=-0.838;SB=-9.925e-03 GT:AD:DP:GQ:PL 0/1:17,37:54:28:149,0,28 chrIV 758342 . T C 301 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=16.04;MQ0=10;QD=5.90;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:42:334,42,0 chrIV 758348 . A G 256 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9722;MLEAC=2;MLEAF=1.00;MQ=16.48;MQ0=8;MQRankSum=0.279;QD=5.33;ReadPosRankSum=2.327;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:2,46:48:36:289,36,0 chrIV 758354 . T C 194.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;DP=46;Dels=0.00;FS=7.460;HaplotypeScore=2.4495;MLEAC=1;MLEAF=0.500;MQ=16.87;MQ0=7;MQRankSum=0.714;QD=4.22;ReadPosRankSum=0.823;SB=0.237 GT:AD:DP:GQ:PL 0/1:14,32:46:20:224,0,20 chrIV 758372 . A G 449 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.44;MQ0=6;MQRankSum=0.127;QD=9.55;ReadPosRankSum=1.648;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:1,46:47:54:482,54,0 chrIV 758374 . C A 421 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=6;QD=9.15;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:51:454,51,0 chrIV 758411 . A T 125.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=21.67;MQ0=12;MQRankSum=-0.168;QD=2.31;ReadPosRankSum=0.142;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,27:54:99:155,0,272 chrIV 758412 . C A 222.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=21.46;MQ0=13;MQRankSum=0.186;QD=4.27;ReadPosRankSum=0.300;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,24:52:99:252,0,158 chrIV 758414 . A G 214.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.526;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=20.86;MQ0=16;MQRankSum=1.470;QD=3.89;ReadPosRankSum=0.414;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,24:55:99:244,0,164 chrIV 758416 . C A 214.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=20.86;MQ0=16;MQRankSum=0.157;QD=3.89;ReadPosRankSum=-0.157;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,24:55:99:244,0,155 chrIV 758432 . T C 407 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=18;QD=7.83;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:1,51:52:51:440,51,0 chrIV 758441 . T C 387 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.39;MQ0=26;QD=6.67;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:5,53:58:48:420,48,0 chrIV 758445 . G A 382 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.33;MQ0=34;QD=5.54;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,67:69:45:415,45,0 chrIV 759074 . A G 55.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=85;Dels=0.00;FS=2.615;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.63;MQ0=55;MQRankSum=-0.153;QD=0.66;ReadPosRankSum=3.142;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:9,76:85:9:88,9,0 chrIV 759086 . A T 52.97 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.95;MQ0=48;QD=0.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,64:70:9:85,9,0 chrIV 759110 . T C 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.93;MQ0=16;QD=1.46;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,18:19:6:59,6,0 chrIV 759371 . A T 168.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.127;DP=108;Dels=0.00;FS=3.882;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=16.05;MQ0=20;MQRankSum=0.352;QD=1.56;ReadPosRankSum=2.482;SB=2.94 GT:AD:DP:GQ:PL 1/1:60,48:108:21:201,21,0 chrIV 759392 . T C 188.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=15.61;MQ0=19;MQRankSum=-0.196;QD=1.25;ReadPosRankSum=2.412;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:2,149:151:24:221,24,0 chrIV 759401 . T C 233 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.885;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.4866;MLEAC=2;MLEAF=1.00;MQ=15.14;MQ0=21;MQRankSum=4.824;QD=1.53;ReadPosRankSum=0.204;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:11,141:152:30:266,30,0 chrIV 759405 . G A 234 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.841;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=14.88;MQ0=22;MQRankSum=4.832;QD=1.52;ReadPosRankSum=-0.377;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:10,142:154:30:267,30,0 chrIV 759433 . A T 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.688;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.2099;MLEAC=1;MLEAF=0.500;MQ=13.58;MQ0=50;MQRankSum=-0.247;QD=0.19;ReadPosRankSum=1.497;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,102:182:65:65,0,179 chrIV 759440 . C A 75.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.669;DP=175;Dels=0.00;FS=2.193;HaplotypeScore=5.8431;MLEAC=1;MLEAF=0.500;MQ=13.31;MQ0=48;MQRankSum=2.397;QD=0.43;ReadPosRankSum=-1.174;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,55:175:80:105,0,80 chrIV 759468 . A G 291 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=12.71;MQ0=66;MQRankSum=-0.777;QD=2.35;ReadPosRankSum=1.673;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:1,123:124:36:324,36,0 chrIV 759470 . G T 295 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=12.88;MQ0=67;MQRankSum=-0.533;QD=2.32;ReadPosRankSum=1.532;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:2,116:127:36:328,36,0 chrIV 759500 . A G 764 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=144;Dels=0.00;FS=13.291;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=15.39;MQ0=79;MQRankSum=1.570;QD=5.31;ReadPosRankSum=1.678;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,140:144:84:797,84,0 chrIV 759526 . C A 2116 filter AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=27.6038;MLEAC=2;MLEAF=1.00;MQ=21.43;MQ0=64;QD=11.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,185:189:99:2149,222,0 chrIV 759564 . C A 6336.01 filter AC=2;AF=1.00;AN=2;DP=394;Dels=0.00;FS=0.000;HaplotypeScore=3.3175;MLEAC=2;MLEAF=1.00;MQ=24.37;MQ0=50;QD=16.08;SB=-3.943e+03 GT:AD:DP:GQ:PL 1/1:0,394:394:99:6336,591,0 chrIV 759578 . T C 6601.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=445;Dels=0.00;FS=7.127;HaplotypeScore=4.9639;MLEAC=2;MLEAF=1.00;MQ=25.04;MQ0=39;MQRankSum=-2.383;QD=14.83;ReadPosRankSum=2.353;SB=-4.711e+03 GT:AD:DP:GQ:PL 1/1:2,442:445:99:6601,630,0 chrIV 759584 . T C 7277.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.331;DP=502;Dels=0.00;FS=14.045;HaplotypeScore=19.1910;MLEAC=2;MLEAF=1.00;MQ=25.77;MQ0=37;MQRankSum=0.323;QD=14.50;ReadPosRankSum=3.339;SB=-5.168e+03 GT:AD:DP:GQ:PL 1/1:4,498:502:99:7277,693,0 chrIV 759625 . A T 6868.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.792;DP=481;Dels=0.00;FS=4.295;HaplotypeScore=13.1134;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=25;MQRankSum=4.299;QD=14.28;ReadPosRankSum=-0.760;SB=-4.281e+03 GT:AD:DP:GQ:PL 1/1:32,449:481:99:6868,682,0 chrIV 759660 . A G 3033 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.334;DP=274;Dels=0.00;FS=28.728;HaplotypeScore=15.6875;MLEAC=2;MLEAF=1.00;MQ=26.98;MQ0=15;MQRankSum=-1.967;QD=11.07;ReadPosRankSum=5.197;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:11,263:274:99:3066,312,0 chrIV 759662 . G T 2816 filter AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=26.91;MQ0=15;QD=11.00;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,230:256:99:2849,282,0 chrIV 759686 . T C 1886 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=186;Dels=0.00;FS=3.006;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=16;MQRankSum=-2.377;QD=10.14;ReadPosRankSum=2.348;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:1919,201,0 chrIV 759698 . T C 1169.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;DP=185;Dels=0.00;FS=11.291;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=25.14;MQ0=12;MQRankSum=4.633;QD=6.32;ReadPosRankSum=-3.146;SB=-1.258e+03 GT:AD:DP:GQ:PL 0/1:40,144:185:99:1199,0,289 chrIV 759714 . A G 2605 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.786;DP=202;Dels=0.00;FS=7.982;HaplotypeScore=11.2003;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=6;MQRankSum=2.747;QD=12.90;ReadPosRankSum=3.754;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:6,196:202:99:2638,291,0 chrIV 759756 . C A 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=171;Dels=0.00;FS=11.751;HaplotypeScore=34.2498;MLEAC=2;MLEAF=1.00;MQ=40.02;MQ0=3;MQRankSum=3.235;QD=18.85;ReadPosRankSum=0.624;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:7,163:171:99:3256,255,0 chrIV 759794 . A T 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=3.149;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.99;MQ0=0;MQRankSum=0.272;QD=20.56;ReadPosRankSum=1.667;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3289,339,0 chrIV 759809 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;QD=20.08;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3085,310,0 chrIV 759818 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;QD=19.04;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3231,339,0 chrIV 759888 . T C 3522.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.1392;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=24.63;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3522,358,0 chrIV 760206 . G C 2087 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.93;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2120,216,0 chrIV 760217 . C T 2280 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.27;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2313,240,0 chrIV 760275 . G C 3712.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.08;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3712,382,0 chrIV 760350 . A G 4589.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=25.21;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4589,472,0 chrIV 760456 . G A 4138.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.86;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4138,409,0 chrIV 760734 . G A 2843 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2876,283,0 chrIV 760775 . T C 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.644;QD=24.22;ReadPosRankSum=1.673;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2891,312,0 chrIV 761335 . T C 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.102;HaplotypeScore=4.3158;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.180;QD=26.71;ReadPosRankSum=1.660;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2597,258,0 chrIV 761363 . A G 2534 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=22.83;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2567,261,0 chrIV 761375 . T C 2745 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=23.26;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2778,277,0 chrIV 761455 . A G 2782 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.76;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2815,285,0 chrIV 761715 . C T 4578.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.7146;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.16;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4578,451,0 chrIV 762336 . A T 5321.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.6768;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.74;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5321,523,0 chrIV 763207 . A G 5776.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=18.0190;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.01;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5776,601,0 chrIV 766140 . T C 7129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.631;DP=296;Dels=0.00;FS=3.757;HaplotypeScore=35.1144;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.166;QD=24.08;ReadPosRankSum=4.131;SB=-2.939e+03 GT:AD:DP:GQ:PL 1/1:6,287:296:99:7129,704,0 chrIV 766526 . A G 2481 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.96;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2514,255,0 chrIV 767007 . C T 4798.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=19.8043;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.42;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,210:214:99:4798,472,0 chrIV 767443 . A G 4661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=197;Dels=0.00;FS=2.965;HaplotypeScore=14.4404;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.119;QD=23.66;ReadPosRankSum=2.411;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:2,190:197:99:4661,472,0 chrIV 768037 . T C 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=8.519;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.516;QD=23.33;ReadPosRankSum=1.678;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1526,153,0 chrIV 770352 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=26.72;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3240,328,0 chrIV 770800 . G T 4437.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=18.0161;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.35;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4437,442,0 chrIV 773298 . T C 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=4.594;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.385;QD=25.15;ReadPosRankSum=1.708;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3621,376,0 chrIV 773797 . G A 4497.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.12;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4497,466,0 chrIV 774849 . T C 2519 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2003;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2552,264,0 chrIV 781103 . T C 4852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=3.609;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.629;QD=23.78;ReadPosRankSum=1.715;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4852,496,0 chrIV 781568 . G A 4796.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.3382;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.07;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4796,475,0 chrIV 781784 . A C 4046.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=27.34;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:4046,415,0 chrIV 784861 . G C 4162.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.1414;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.51;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4162,415,0 chrIV 785043 . C T 5149.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.68;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5149,499,0 chrIV 785712 . A G 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.6028;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.853;QD=23.84;ReadPosRankSum=1.705;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3156,325,0 chrIV 787047 . C A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3568,352,0 chrIV 787345 . G A 4654.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.71;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4654,454,0 chrIV 789377 . T A 4684.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.1581;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=25.18;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4684,466,0 chrIV 789392 . C A 4419.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.02;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4419,463,0 chrIV 790216 . G T 5319.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=14.4009;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:5319,547,0 chrIV 791136 . C T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.1357;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.14;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3461,343,0 chrIV 795537 . C G 6471.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=16.4073;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.19;SB=-3.385e+03 GT:AD:DP:GQ:PL 1/1:0,274:279:99:6471,685,0 chrIV 795883 . G A 5942.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=21.69;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:5942,613,0 chrIV 795893 . G A 5823.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=22.75;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5823,583,0 chrIV 796092 . C T 4212.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.93;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4212,409,0 chrIV 796104 . T A 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=173;Dels=0.00;FS=3.138;HaplotypeScore=4.2291;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=0.871;QD=20.62;ReadPosRankSum=1.672;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3567,370,0 chrIV 796175 . G T 4433.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.01;FS=0.000;HaplotypeScore=22.0736;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.19;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4433,448,0 chrIV 800414 . A G 3883.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.1763;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.21;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3883,397,0 chrIV 802129 . T C 5643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=245;Dels=0.00;FS=3.848;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.619;QD=23.03;ReadPosRankSum=1.661;SB=-2.888e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5643,571,0 chrIV 802858 . G A 2980 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=24.63;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3013,295,0 chrIV 802940 . A G 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DP=93;Dels=0.00;FS=177.353;HaplotypeScore=13.4869;MLEAC=1;MLEAF=0.500;MQ=44.48;MQ0=5;MQRankSum=-6.125;QD=0.23;ReadPosRankSum=2.344;SB=1.18 GT:AD:DP:GQ:PL 0/1:63,30:93:51:51,0,1148 chrIV 802970 . C T 725.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;DP=89;Dels=0.00;FS=76.728;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=29.09;MQ0=18;MQRankSum=-1.284;QD=8.15;ReadPosRankSum=-0.104;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:33,56:89:99:755,0,200 chrIV 803074 . A G 1056.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.431;DP=79;Dels=0.00;FS=20.052;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=25.22;MQ0=13;MQRankSum=4.496;QD=13.37;ReadPosRankSum=-1.234;SB=-8.004e+01 GT:AD:DP:GQ:PL 0/1:21,58:79:20:1086,0,20 chrIV 803098 . G A 280.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.027;DP=59;Dels=0.00;FS=19.980;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=28.44;MQ0=4;MQRankSum=-0.345;QD=4.75;ReadPosRankSum=-2.876;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,21:59:99:310,0,682 chrIV 803103 . A G 117.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.241;DP=59;Dels=0.00;FS=13.282;HaplotypeScore=2.7525;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=4;MQRankSum=-0.255;QD=1.98;ReadPosRankSum=-2.844;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,15:59:99:147,0,744 chrIV 804343 . A G 3387.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=197;Dels=0.00;FS=3.102;HaplotypeScore=10.0781;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=5;MQRankSum=-0.469;QD=17.19;ReadPosRankSum=1.624;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3387,372,0 chrIV 806407 . T C 3892.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.79;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3892,397,0 chrIV 806584 . T C 6226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.826;QD=25.73;ReadPosRankSum=2.409;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:2,238:242:99:6226,634,0 chrIV 808808 . G A 5096.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.2252;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.35;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:5096,508,0 chrIV 809533 . G A 5991.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=9.7598;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.06;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5991,595,0 chrIV 810443 . A C 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.999;QD=22.56;ReadPosRankSum=1.666;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1206,120,0 chrIV 811037 . T G 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=139;Dels=0.00;FS=6.115;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.150;QD=23.07;ReadPosRankSum=2.397;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3240,325,0 chrIV 812928 . G A 211.03 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=7.5542;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=19.18;SB=-1.569e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:24:244,24,0 chrIV 812947 . C T 151.13 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.11;SB=-9.807e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:184,18,0 chrIV 813568 . G A 5240.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.9831;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.31;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5240,541,0 chrIV 815241 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.2121;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.61;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2237,222,0 chrIV 815495 . A G 3841.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.10;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3841,397,0 chrIV 815763 . G T 5121.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.2500;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.49;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5121,520,0 chrIV 817489 . C T 3637.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.31;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3637,375,0 chrIV 817854 . C T 2908 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.5359;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.23;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2941,292,0 chrIV 818363 . C A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.21;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:4010,397,0 chrIV 818486 . C T 1983 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.28;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2016,210,0 chrIV 818791 . T C 1838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.903;QD=25.18;ReadPosRankSum=2.848;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:3,70:73:99:1871,195,0 chrIV 819242 . A G 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=3.041;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.434;QD=23.49;ReadPosRankSum=2.413;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3181,328,0 chrIV 819541 . C T 3432.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.61;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3432,337,0 chrIV 819584 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.71;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3651,358,0 chrIV 819656 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.5665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3081,304,0 chrIV 819832 . A G 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=3.424;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.369;QD=24.71;ReadPosRankSum=1.708;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3533,364,0 chrIV 819998 . A T 4371.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.7352;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=26.98;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4371,433,0 chrIV 820028 . C T 4116.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.90;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4116,403,0 chrIV 820205 . C G 3056 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=26.57;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:3089,310,0 chrIV 820419 . G A 4165.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=26.70;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4165,412,0 chrIV 820472 . T C 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=155;Dels=0.00;FS=2.642;HaplotypeScore=11.1592;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.442;QD=24.33;ReadPosRankSum=2.385;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3771,391,0 chrIV 820541 . T G 3668.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.30;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3668,367,0 chrIV 820638 . T C 4545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=194;Dels=0.00;FS=3.857;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.884;QD=23.43;ReadPosRankSum=1.714;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:4545,463,0 chrIV 820678 . G A 4470.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=25.11;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4470,454,0 chrIV 820777 . C T 4270.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=15.9191;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=26.04;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4270,415,0 chrIV 820879 . C T 3453.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=23.65;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3453,340,0 chrIV 820898 . C A 2790 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.98;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2823,285,0 chrIV 820921 . G A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.67;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3423,343,0 chrIV 820996 . C A 4570.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=8.6416;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.57;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4570,451,0 chrIV 821234 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=13.6368;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.53;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3116,316,0 chrIV 821264 . A T 3460.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=24.54;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3460,343,0 chrIV 821309 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=23.68;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2969,295,0 chrIV 821327 . T C 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=0.504;QD=24.79;ReadPosRankSum=1.701;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2760,285,0 chrIV 821485 . T C 3601.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=24.50;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3601,358,0 chrIV 821498 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-1.544;QD=22.57;ReadPosRankSum=1.884;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3430,346,0 chrIV 821555 . A G 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=157;Dels=0.00;FS=8.492;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-0.008;QD=20.31;ReadPosRankSum=2.418;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3222,328,0 chrIV 821579 . A G 4069.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.80;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4069,427,0 chrIV 821605 . C T 4948.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=25.12;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4948,481,0 chrIV 821822 . A G 4152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.032;QD=25.47;ReadPosRankSum=1.583;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4152,430,0 chrIV 822225 . G C 3375.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3375,340,0 chrIV 822347 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=24.49;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2825,280,0 chrIV 822353 . T A 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=1.063;QD=21.98;ReadPosRankSum=1.703;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2649,264,0 chrIV 822554 . T C 2828 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3550;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.18;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2861,294,0 chrIV 822572 . T A 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=3.305;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.909;QD=22.40;ReadPosRankSum=1.619;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2766,279,0 chrIV 822719 . T C 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.5958;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.356;QD=25.65;ReadPosRankSum=1.682;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3540,361,0 chrIV 823181 . G A 2784 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=24.42;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2817,280,0 chrIV 823188 . A G 2492 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=21.30;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2525,261,0 chrIV 823198 . T G 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=0.279;QD=20.73;ReadPosRankSum=1.648;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2604,264,0 chrIV 823234 . T C 2691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.347;QD=21.19;ReadPosRankSum=1.705;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2724,276,0 chrIV 824354 . T C 4296.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.87;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4296,442,0 chrIV 824938 . A G 3354.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3354,343,0 chrIV 825422 . T C 3861.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.6944;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.74;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3861,388,0 chrIV 825834 . A G 3122 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.59;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3155,325,0 chrIV 826114 . T C 4748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=187;Dels=0.00;FS=3.024;HaplotypeScore=15.0515;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.007;QD=25.39;ReadPosRankSum=2.423;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:2,183:187:99:4748,487,0 chrIV 826151 . T A 5052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=191;Dels=0.00;FS=3.126;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.424;QD=26.45;ReadPosRankSum=1.678;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:5052,487,0 chrIV 828748 . T C 4144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.0637;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.021;QD=24.81;ReadPosRankSum=1.711;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:4144,427,0 chrIV 829122 . T C 3803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=146;Dels=0.00;FS=2.988;HaplotypeScore=10.0690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.177;QD=26.05;ReadPosRankSum=2.416;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3803,385,0 chrIV 830115 . T C 4261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=166;Dels=0.00;FS=11.550;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.467;QD=25.67;ReadPosRankSum=2.909;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:4261,442,0 chrIV 830274 . A T 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.791;QD=23.93;ReadPosRankSum=1.686;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3614,361,0 chrIV 830619 . A G 3514.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.65;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3514,369,0 chrIV 830754 . A T 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=136;Dels=0.00;FS=2.581;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.311;QD=24.46;ReadPosRankSum=2.874;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3326,322,0 chrIV 831133 . A G 4687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=3.900;HaplotypeScore=12.0519;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.357;QD=24.67;ReadPosRankSum=1.695;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4687,487,0 chrIV 831279 . A G 4771.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.24;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4771,490,0 chrIV 831397 . A G 5455.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.6477;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.57;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:5455,574,0 chrIV 833173 . G T 4877.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.02;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4877,496,0 chrIV 834314 . A G 7222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.214;DP=317;Dels=0.00;FS=8.001;HaplotypeScore=17.9066;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.738;QD=22.78;ReadPosRankSum=3.341;SB=-3.648e+03 GT:AD:DP:GQ:PL 1/1:4,313:317:99:7222,730,0 chrIV 835165 . C A 4846.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.8526;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.37;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4846,484,0 chrIV 836028 . G A 5155.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.1756;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.43;SB=-2.789e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5155,514,0 chrIV 836148 . A G 7443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.433;DP=307;Dels=0.00;FS=16.762;HaplotypeScore=30.9665;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.291;QD=24.24;ReadPosRankSum=3.409;SB=-3.190e+03 GT:AD:DP:GQ:PL 1/1:4,299:306:99:7443,754,0 chrIV 839950 . G A 3968.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.99;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3968,391,0 chrIV 840422 . A T 359 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.124;DP=27;Dels=0.04;FS=9.379;HaplotypeScore=8.9604;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.525;QD=13.30;ReadPosRankSum=-0.803;SB=0.062 GT:AD:DP:GQ:PL 1/1:3,23:26:45:392,45,0 chrIV 843125 . G T 4609.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.0368;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.91;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4609,466,0 chrIV 843659 . G A 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.895;QD=26.31;ReadPosRankSum=0.260;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3216,309,0 chrIV 843818 . C A 5423.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=12.8206;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.38;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5423,556,0 chrIV 844178 . C T 6297.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=16.3226;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.35;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:6297,631,0 chrIV 844392 . A T 6221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=14.2787;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.098;QD=25.19;ReadPosRankSum=1.648;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:1,245:247:99:6221,604,0 chrIV 845136 . C T 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=130;Dels=0.00;FS=3.581;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.959;QD=23.59;ReadPosRankSum=-0.080;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3100,307,0 chrIV 845391 . G C 3672.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.32;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3672,373,0 chrIV 845494 . T G 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.134;QD=24.47;ReadPosRankSum=1.701;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2725,279,0 chrIV 845513 . T C 2777 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.34;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2810,297,0 chrIV 847337 . G T 2992 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.06;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3025,309,0 chrIV 847511 . G A 4431.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4431,457,0 chrIV 847822 . T C 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=143;Dels=0.00;FS=7.098;HaplotypeScore=8.8722;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.013;QD=24.20;ReadPosRankSum=2.398;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3461,349,0 chrIV 849395 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.30;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3170,313,0 chrIV 849796 . T C 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=4.001;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.992;QD=25.84;ReadPosRankSum=1.698;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2695,273,0 chrIV 850201 . G C 1712 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1745,177,0 chrIV 851786 . A T 5284.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.3487;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.04;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5284,526,0 chrIV 852313 . C T 4324.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.85;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4324,445,0 chrIV 852341 . A T 4398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=3.192;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.901;QD=25.72;ReadPosRankSum=1.692;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4398,433,0 chrIV 853448 . A C 2886 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2919,292,0 chrIV 855056 . C T 3992.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.75;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3992,394,0 chrIV 855322 . G C 3673.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.32;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3673,376,0 chrIV 855709 . C T 3730.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.55;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3730,367,0 chrIV 856366 . C T 4803.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.66;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4803,496,0 chrIV 856696 . A G 5147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.265;QD=24.28;ReadPosRankSum=2.967;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:3,209:212:99:5147,517,0 chrIV 857627 . A C 4799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=188;Dels=0.00;FS=4.963;HaplotypeScore=12.4541;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.421;QD=25.53;ReadPosRankSum=1.676;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,184:188:99:4799,499,0 chrIV 858371 . C T 5364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=247;Dels=0.00;FS=3.997;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.817;QD=21.72;ReadPosRankSum=1.352;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:1,245:247:99:5364,532,0 chrIV 860204 . A G 3966.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.63;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3966,415,0 chrIV 860711 . T G 5633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.333;DP=233;Dels=0.00;FS=2.830;HaplotypeScore=16.1831;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.333;QD=24.18;ReadPosRankSum=2.058;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:2,230:233:99:5633,559,0 chrIV 860764 . T C 5291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.946;DP=237;Dels=0.00;FS=6.578;HaplotypeScore=10.8194;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.740;QD=22.32;ReadPosRankSum=2.030;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:2,233:237:99:5291,532,0 chrIV 861257 . A G 4353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.3999;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.184;QD=24.46;ReadPosRankSum=1.693;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4353,445,0 chrIV 861716 . G A 2332 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2365,243,0 chrIV 862580 . T G 2723 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.18;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2756,276,0 chrIV 863847 . G A 3145 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.97;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3178,327,0 chrIV 863856 . G T 3177 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.3511;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.18;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3210,330,0 chrIV 864550 . T C 4626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.00;FS=4.118;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.553;QD=24.09;ReadPosRankSum=1.696;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4626,481,0 chrIV 864978 . G A 165.06 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.34;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:21:198,21,0 chrIV 865291 . C T 4891.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.09;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4891,490,0 chrIV 866146 . A G 6008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=251;Dels=0.00;FS=3.207;HaplotypeScore=17.1407;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.577;QD=23.94;ReadPosRankSum=1.718;SB=-3.349e+03 GT:AD:DP:GQ:PL 1/1:1,248:251:99:6008,619,0 chrIV 866436 . T C 5689.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=24.3913;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.90;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:0,235:238:99:5689,580,0 chrIV 866723 . G T 6467.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=21.9486;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.59;SB=-3.778e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:6467,637,0 chrIV 866949 . C T 6842.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=28.7991;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.73;SB=-3.613e+03 GT:AD:DP:GQ:PL 1/1:0,301:301:99:6842,703,0 chrIV 866998 . T C 7327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=291;Dels=0.00;FS=2.805;HaplotypeScore=14.2785;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.256;QD=25.18;ReadPosRankSum=2.433;SB=-2.971e+03 GT:AD:DP:GQ:PL 1/1:2,288:291:99:7327,745,0 chrIV 867546 . G A 8249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.970;DP=351;Dels=0.00;FS=0.000;HaplotypeScore=26.3977;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.376;QD=23.50;ReadPosRankSum=-1.692;SB=-4.739e+03 GT:AD:DP:GQ:PL 1/1:1,349:351:99:8249,832,0 chrIV 867677 . G A 8042.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=25.6433;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=24.08;SB=-4.288e+03 GT:AD:DP:GQ:PL 1/1:0,333:334:99:8042,811,0 chrIV 867821 . C A 4256.01 SnpCluster AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=39.22;MQ0=0;QD=15.82;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:4256,433,0 chrIV 867828 . T C 3760.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.735;DP=271;Dels=0.00;FS=7.935;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=0;MQRankSum=0.740;QD=13.87;ReadPosRankSum=3.787;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:5,266:271:99:3760,396,0 chrIV 867831 . A C 3978.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.828;DP=274;Dels=0.00;FS=21.300;HaplotypeScore=8.2298;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;MQRankSum=-3.178;QD=14.52;ReadPosRankSum=3.799;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:5,269:274:99:3978,409,0 chrIV 867837 . A G 3638.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=277;Dels=0.00;FS=13.180;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=0;MQRankSum=0.895;QD=13.13;ReadPosRankSum=2.960;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:3,273:277:99:3638,381,0 chrIV 867841 . C T 3878.01 SnpCluster AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;QD=14.36;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:3878,391,0 chrIV 867974 . A G 4834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.192;DP=221;Dels=0.00;FS=5.196;HaplotypeScore=13.7614;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=-0.935;QD=21.87;ReadPosRankSum=3.397;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:4,217:221:99:4834,493,0 chrIV 867988 . A G 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.255;DP=233;Dels=0.00;FS=1.882;HaplotypeScore=194.6907;MLEAC=1;MLEAF=0.500;MQ=49.29;MQ0=0;MQRankSum=3.718;QD=0.09;ReadPosRankSum=-6.653;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:210,23:233:51:51,0,170 chrIV 867989 . A G 219.46 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.680;DP=231;Dels=0.00;FS=4.422;HaplotypeScore=4.2973;MLEAC=1;MLEAF=0.500;MQ=48.94;MQ0=0;MQRankSum=-3.245;QD=0.95;ReadPosRankSum=7.159;SB=-2.142e+03 GT:AD:DP:GQ:PL 0/1:22,209:231:1:248,0,1 chrIV 868027 . G A 5704.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=18.7500;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=22.28;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5704,574,0 chrIV 868348 . G T 5576.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=26.5163;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.93;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5576,553,0 chrIV 868576 . A G 4126.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.84;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4126,427,0 chrIV 868578 . G A 3979.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.50;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:3979,418,0 chrIV 868749 . T C 5167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=205;Dels=0.00;FS=9.488;HaplotypeScore=12.0197;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.828;QD=25.20;ReadPosRankSum=2.936;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:3,201:205:99:5167,523,0 chrIV 868817 . C T 4962.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=16.7540;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=24.32;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4962,493,0 chrIV 868916 . C A 4671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.7677;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.184;QD=24.58;ReadPosRankSum=1.677;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4671,444,0 chrIV 869195 . T C 1278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.033;DP=211;Dels=0.00;FS=9.532;HaplotypeScore=141.2908;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=1.192;QD=6.06;ReadPosRankSum=-6.176;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:133,76:211:32:1311,32,0 chrIV 869200 . A C 247.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.749;DP=216;Dels=0.00;FS=11.510;HaplotypeScore=140.0040;MLEAC=1;MLEAF=0.500;MQ=58.38;MQ0=0;MQRankSum=1.493;QD=1.14;ReadPosRankSum=7.227;SB=-1.284e+03 GT:AD:DP:GQ:PL 0/1:66,149:216:99:277,0,1052 chrIV 870200 . G C 4301.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.15;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4301,439,0 chrIV 870699 . A T 1616 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=10.7720;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.12;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1649,165,0 chrIV 870780 . G T 4154.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=29.46;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4154,409,0 chrIV 870805 . T C 3154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.472;QD=26.07;ReadPosRankSum=1.703;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3187,333,0 chrIV 870895 . C T 2486 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.60;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2519,250,0 chrIV 870918 . T C 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=150;Dels=0.00;FS=9.297;HaplotypeScore=16.7293;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.134;QD=20.86;ReadPosRankSum=2.765;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:3162,333,0 chrIV 871353 . C T 3787.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=24.28;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3787,385,0 chrIV 871373 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.50;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3071,312,0 chrIV 877773 . C A 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;DP=31;Dels=0.00;FS=2.282;HaplotypeScore=23.7158;MLEAC=1;MLEAF=0.500;MQ=17.89;MQ0=11;MQRankSum=2.126;QD=1.36;ReadPosRankSum=1.276;SB=-4.006e+00 GT:AD:DP:GQ:PL 0/1:25,6:31:72:72,0,183 chrIV 878171 . T C 1931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.332;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.2433;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.421;QD=24.76;ReadPosRankSum=1.510;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1964,201,0 chrIV 884761 . T A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=14.5950;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.98;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3426,343,0 chrIV 884825 . A G 3515.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.24;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3515,369,0 chrIV 887044 . A G 1188 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.75;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1221,132,0 chrIV 887742 . G T 6690.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=16.8357;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.98;SB=-2.853e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:6690,682,0 chrIV 889122 . T C 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.577;QD=25.67;ReadPosRankSum=1.681;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1753,177,0 chrIV 889739 . C T 4466.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.12;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4466,439,0 chrIV 890069 . T C 6427.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.20;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:6427,643,0 chrIV 890117 . C T 5446.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=18.7935;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.60;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5446,541,0 chrIV 890632 . T C 11527.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=473;Dels=0.00;FS=8.797;HaplotypeScore=30.2578;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-0.390;QD=24.37;ReadPosRankSum=3.381;SB=-6.020e+03 GT:AD:DP:GQ:PL 1/1:4,466:473:99:11527,1175,0 chrIV 893751 . C G 4908.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.8468;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4908,508,0 chrIV 894453 . A T 4590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.629;DP=215;Dels=0.00;FS=2.521;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.507;QD=21.35;ReadPosRankSum=2.864;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:4,211:215:99:4590,481,0 chrIV 898087 . T C 2890 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2923,303,0 chrIV 898970 . C T 4464.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.66;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4464,451,0 chrIV 899304 . G A 3059 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.71;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3092,304,0 chrIV 900294 . C T 5048.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.58;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5048,490,0 chrIV 901107 . T A 4695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=192;Dels=0.00;FS=7.528;HaplotypeScore=7.8247;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.390;QD=24.45;ReadPosRankSum=2.334;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4695,469,0 chrIV 902361 . T C 4589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.036;QD=24.15;ReadPosRankSum=1.714;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4589,460,0 chrIV 904395 . C T 3047 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.39;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3080,315,0 chrIV 905409 . T C 1916 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.61;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1949,198,0 chrIV 908649 . A G 4186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=174;Dels=0.00;FS=2.548;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.122;QD=24.06;ReadPosRankSum=2.960;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:3,170:174:99:4186,427,0 chrIV 909033 . G C 3623.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.36;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3623,376,0 chrIV 909447 . T A 4693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=200;Dels=0.00;FS=4.145;HaplotypeScore=18.7075;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.173;QD=23.47;ReadPosRankSum=1.663;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4693,460,0 chrIV 910688 . T C 2541 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2371;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.10;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2574,267,0 chrIV 911925 . G T 2601 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.50;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2634,262,0 chrIV 914816 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2969,309,0 chrIV 914902 . A G 3350.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.5509;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.97;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3350,354,0 chrIV 914952 . C T 3469.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.1862;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.78;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3469,346,0 chrIV 915199 . C T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.3746;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.36;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3924,397,0 chrIV 915370 . T A 1638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.577;QD=20.22;ReadPosRankSum=1.689;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1671,168,0 chrIV 915378 . A T 1608 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.14;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1641,165,0 chrIV 915455 . A G 3065 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.22;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3098,318,0 chrIV 916468 . G A 4847.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5928;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=28.35;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4847,472,0 chrIV 916712 . A G 6503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=257;Dels=0.00;FS=6.490;HaplotypeScore=20.6847;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.113;QD=25.30;ReadPosRankSum=2.364;SB=-3.355e+03 GT:AD:DP:GQ:PL 1/1:2,255:257:99:6503,658,0 chrIV 917070 . G C 1809 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.9510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1842,201,0 chrIV 917149 . G A 2130 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2163,216,0 chrIV 917833 . A G 3724.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.8810;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.18;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3724,379,0 chrIV 918606 . G T 4557.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.7724;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.75;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4557,451,0 chrIV 920392 . T A 4283.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.5952;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.19;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4283,424,0 chrIV 920565 . G A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.87;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3880,397,0 chrIV 920628 . C T 3546.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3546,349,0 chrIV 922174 . C T 4480.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.31;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4480,445,0 chrIV 924234 . C A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.85;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3610,375,0 chrIV 924619 . G T 4475.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.28;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4475,448,0 chrIV 926737 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.8213;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.05;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3964,397,0 chrIV 926855 . G A 3993.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.6959;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=23.63;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3993,400,0 chrIV 926869 . C A 4294.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.8130;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.48;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4294,427,0 chrIV 926907 . G C 4526.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=18.9171;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.67;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4526,460,0 chrIV 926985 . T C 4440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=3.058;HaplotypeScore=14.5218;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.282;QD=23.74;ReadPosRankSum=1.713;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:1,183:187:99:4440,445,0 chrIV 927608 . C A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.8619;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=16.55;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3425,334,0 chrIV 927628 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=15.0171;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=17.17;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3279,331,0 chrIV 928114 . A T 5157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;DP=237;Dels=0.00;FS=2.874;HaplotypeScore=8.7421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.082;QD=21.76;ReadPosRankSum=2.429;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:2,235:237:99:5157,535,0 chrIV 928579 . C G 566.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.620;DP=305;Dels=0.00;FS=537.012;HaplotypeScore=24.9669;MLEAC=1;MLEAF=0.500;MQ=57.69;MQ0=0;MQRankSum=-2.565;QD=1.86;ReadPosRankSum=-10.650;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:222,77:305:99:596,0,3212 chrIV 928756 . C T 7810.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=19.1798;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=25.52;SB=-3.672e+03 GT:AD:DP:GQ:PL 1/1:0,305:306:99:7810,799,0 chrIV 928988 . T C 3659.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.31;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3659,373,0 chrIV 929658 . A T 3439.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=153;Dels=0.00;FS=2.354;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=1.046;QD=22.48;ReadPosRankSum=2.678;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3439,357,0 chrIV 929660 . G C 3502.01 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=23.19;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3502,352,0 chrIV 929662 . G A 3421.01 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=22.36;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3421,354,0 chrIV 929900 . G C 4604.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.5600;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=25.02;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,180:184:99:4604,469,0 chrIV 929923 . A G 4321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=3.509;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-0.049;QD=24.69;ReadPosRankSum=1.712;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4321,445,0 chrIV 930059 . T C 4208.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4208,436,0 chrIV 930822 . A T 993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.632;DP=64;Dels=0.02;FS=8.316;HaplotypeScore=10.1523;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=-2.581;QD=15.52;ReadPosRankSum=3.013;SB=-6.839e+02 GT:AD:DP:GQ:PL 1/1:5,58:63:99:1026,102,0 chrIV 930823 . A T 996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.551;DP=64;Dels=0.02;FS=8.665;HaplotypeScore=4.3533;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=-0.324;QD=15.56;ReadPosRankSum=2.692;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:4,59:63:99:1029,102,0 chrIV 931013 . G C 1548 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.11;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1581,165,0 chrIV 931376 . C A 5508.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.3907;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.48;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5508,541,0 chrIV 931821 . C T 4782.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.67;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4782,496,0 chrIV 933755 . A G 3969.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.50;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3969,403,0 chrIV 933896 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=3.753;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=0.297;QD=24.74;ReadPosRankSum=1.707;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3488,352,0 chrIV 934719 . C A 2939 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=25.78;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2972,300,0 chrIV 934756 . A G 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.392;QD=25.42;ReadPosRankSum=1.699;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2727,274,0 chrIV 934903 . T C 3699.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=27.20;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3699,373,0 chrIV 935012 . A G 2254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=90;Dels=0.00;FS=7.007;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.291;QD=25.04;ReadPosRankSum=2.339;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:2,87:90:99:2287,231,0 chrIV 935079 . G C 2772 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.53;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2805,291,0 chrIV 935096 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=25.92;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3247,319,0 chrIV 935138 . G A 4098.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.94;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4098,400,0 chrIV 935955 . A T 5486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=18.1017;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.685;QD=24.49;ReadPosRankSum=1.717;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:5486,538,0 chrIV 936221 . A G 5238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=207;Dels=0.00;FS=2.829;HaplotypeScore=7.8794;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.619;QD=25.30;ReadPosRankSum=2.378;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:5238,529,0 chrIV 936290 . A T 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.221;DP=148;Dels=0.00;FS=8.487;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.482;QD=23.16;ReadPosRankSum=3.280;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:4,144:148:99:3428,352,0 chrIV 936485 . T A 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=121.3077;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=-0.381;QD=22.46;ReadPosRankSum=1.683;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3200,319,0 chrIV 936486 . G C 3149 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=121.3077;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=22.33;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3182,319,0 chrIV 936663 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.38;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3559,370,0 chrIV 937029 . A G 5960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.167;QD=24.94;ReadPosRankSum=1.689;SB=-3.074e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5960,595,0 chrIV 937139 . T C 5705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.215;DP=234;Dels=0.00;FS=14.920;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.078;QD=24.38;ReadPosRankSum=3.394;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:4,230:234:99:5705,580,0 chrIV 937167 . C T 5454.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.73;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5454,535,0 chrIV 937744 . G A 1870 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.29;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1903,195,0 chrIV 937875 . T C 4806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.284;QD=27.31;ReadPosRankSum=2.407;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4806,490,0 chrIV 938009 . A T 4479.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.50;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4479,439,0 chrIV 938500 . G A 5066.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.1846;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=22.62;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5066,499,0 chrIV 938510 . T C 4833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=224;Dels=0.00;FS=12.264;HaplotypeScore=5.5326;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=1.022;QD=21.58;ReadPosRankSum=2.888;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:3,221:224:99:4833,511,0 chrIV 938591 . T C 4788.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.1055;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.18;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4788,499,0 chrIV 939008 . T A 3351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=136;Dels=0.00;FS=3.310;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.604;QD=24.64;ReadPosRankSum=1.655;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3351,346,0 chrIV 939122 . G A 3962.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0570;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.56;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3962,415,0 chrIV 939749 . A G 4398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=190;Dels=0.00;FS=6.766;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.306;QD=23.15;ReadPosRankSum=2.424;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4398,460,0 chrIV 940322 . G A 5393.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.29;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5393,559,0 chrIV 940972 . G C 4499.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.5181;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.93;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4499,475,0 chrIV 940995 . T A 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.7708;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=0.901;QD=20.84;ReadPosRankSum=1.715;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4168,433,0 chrIV 941063 . T C 5036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.290;QD=23.98;ReadPosRankSum=1.715;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:5036,523,0 chrIV 941099 . C T 5273.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5273,526,0 chrIV 941151 . T C 5532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=238;Dels=0.00;FS=10.566;HaplotypeScore=16.2604;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.158;QD=23.24;ReadPosRankSum=2.851;SB=-2.934e+03 GT:AD:DP:GQ:PL 1/1:3,232:238:99:5532,553,0 chrIV 942067 . T G 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.4319;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.370;QD=18.61;ReadPosRankSum=2.129;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3275,351,0 chrIV 942069 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.0092;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.071;QD=19.20;ReadPosRankSum=1.671;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3303,351,0 chrIV 942210 . T A 4842.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.70;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4842,481,0 chrIV 942603 . T C 4733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=184;Dels=0.00;FS=2.976;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.717;QD=25.72;ReadPosRankSum=2.409;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:2,179:184:99:4733,481,0 chrIV 945989 . T C 1213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=53;Dels=0.00;FS=10.086;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=2;MQRankSum=1.664;QD=22.89;ReadPosRankSum=1.664;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:99:1246,132,0 chrIV 946004 . A C 1229 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.052;DP=62;Dels=0.00;FS=10.492;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=6;MQRankSum=1.670;QD=19.82;ReadPosRankSum=0.928;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:7,55:62:99:1262,132,0 chrIV 946006 . A G 1232 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=63;Dels=0.00;FS=7.643;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=7;MQRankSum=0.066;QD=19.56;ReadPosRankSum=1.788;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:9,54:63:99:1265,135,0 chrIV 949789 . T C 4081.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.1045;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4081,412,0 chrIV 949927 . A G 4399.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.6232;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.44;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4399,457,0 chrIV 950587 . G A 4364.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;QD=27.97;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4364,430,0 chrIV 952329 . T C 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=134;Dels=0.00;FS=9.433;HaplotypeScore=8.5796;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.796;QD=25.78;ReadPosRankSum=2.947;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:3,130:134:99:3454,355,0 chrIV 955222 . C T 8737.01 filter AC=2;AF=1.00;AN=2;DP=389;Dels=0.00;FS=0.000;HaplotypeScore=21.3064;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.46;SB=-4.885e+03 GT:AD:DP:GQ:PL 1/1:0,388:389:99:8737,892,0 chrIV 955620 . A C 2202 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.47;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2235,225,0 chrIV 955831 . C T 472 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.67;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:54:505,54,0 chrIV 956734 . G A 4719.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.1303;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.71;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4719,448,0 chrIV 958663 . T A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.77;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3376,349,0 chrIV 959406 . A T 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.666;QD=24.20;ReadPosRankSum=1.666;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3823,391,0 chrIV 960835 . T C 4091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=3.671;HaplotypeScore=13.6301;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.031;QD=24.79;ReadPosRankSum=1.711;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:4091,427,0 chrIV 961077 . C A 3765.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.39;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3765,367,0 chrIV 961189 . A G 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=117;Dels=0.00;FS=2.908;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.062;QD=24.32;ReadPosRankSum=2.408;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2879,294,0 chrIV 961222 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.8153;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.62;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3561,349,0 chrIV 961443 . C T 2845 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.84;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2878,277,0 chrIV 961561 . A T 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=123;Dels=0.00;FS=9.402;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.750;QD=25.79;ReadPosRankSum=2.310;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:3205,319,0 chrIV 961848 . G A 4767.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.24;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4767,475,0 chrIV 962280 . A G 4546.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4546,481,0 chrIV 962545 . G A 6533.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=10.3716;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=26.56;SB=-3.663e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:6533,637,0 chrIV 962572 . C A 5540.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.6116;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.09;SB=-3.224e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5540,562,0 chrIV 962700 . A G 5470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=18.0770;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.363;QD=23.89;ReadPosRankSum=1.670;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,224:229:99:5470,553,0 chrIV 962922 . A G 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=3.034;HaplotypeScore=6.6413;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.992;QD=24.10;ReadPosRankSum=2.379;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3398,352,0 chrIV 962979 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.27;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:2934,336,0 chrIV 962980 . T C 2875 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1110;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=17.53;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2908,336,0 chrIV 963291 . G A 3079 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=25.03;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3112,327,0 chrIV 963747 . C T 5114.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.7537;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.32;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5114,511,0 chrIV 963777 . T C 4770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=198;Dels=0.00;FS=3.376;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.210;QD=24.09;ReadPosRankSum=1.715;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4770,484,0 chrIV 963941 . A G 5341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.770;DP=225;Dels=0.00;FS=5.831;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.356;QD=23.74;ReadPosRankSum=2.942;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:3,221:225:99:5341,559,0 chrIV 964950 . A G 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=3.915;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.806;QD=25.92;ReadPosRankSum=1.698;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2651,270,0 chrIV 965160 . C T 2859 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.06;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2892,303,0 chrIV 965565 . T A 4730.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.57;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4730,469,0 chrIV 965626 . C T 3991.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.79;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3991,394,0 chrIV 967640 . C A 2795 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=14.3693;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.18;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2828,282,0 chrIV 968773 . C T 5229.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.5449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5229,520,0 chrIV 969630 . T C 2183 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2216,219,0 chrIV 974630 . A G 2269 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=26.08;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2302,240,0 chrIV 974689 . T A 2246 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.24;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2279,240,0 chrIV 974882 . A T 2536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.575;HaplotypeScore=2.7811;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=0.183;QD=20.62;ReadPosRankSum=1.676;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2569,264,0 chrIV 974883 . G A 2539 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.7811;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.48;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2572,267,0 chrIV 975126 . G T 4773.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=27.59;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4773,475,0 chrIV 975612 . C A 4573.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=27.38;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4573,466,0 chrIV 976464 . C T 3469.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.26;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3469,349,0 chrIV 976924 . G C 4767.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=16.0412;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.57;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,217:221:99:4767,487,0 chrIV 981187 . A C 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=1;MLEAF=0.500;MQ=24.77;MQ0=9;MQRankSum=0.764;QD=0.52;ReadPosRankSum=-0.975;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:44,3:48:55:55,0,208 chrIV 981194 . A G 58.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.553;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=10.6316;MLEAC=1;MLEAF=0.500;MQ=24.68;MQ0=12;MQRankSum=0.459;QD=1.00;ReadPosRankSum=-1.412;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,5:58:88:88,0,324 chrIV 981199 . C T 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=11.5981;MLEAC=1;MLEAF=0.500;MQ=24.99;MQ0=12;MQRankSum=0.677;QD=0.65;ReadPosRankSum=-0.611;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,5:61:70:70,0,457 chrIV 981200 . T C 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=12.5947;MLEAC=1;MLEAF=0.500;MQ=24.86;MQ0=13;MQRankSum=0.259;QD=0.55;ReadPosRankSum=-0.420;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,5:63:65:65,0,440 chrIV 981206 . G A 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.841;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=11.6282;MLEAC=1;MLEAF=0.500;MQ=24.10;MQ0=18;MQRankSum=-0.837;QD=0.62;ReadPosRankSum=0.198;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,5:71:74:74,0,524 chrIV 981209 . T G 41.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.266;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=10.7192;MLEAC=1;MLEAF=0.500;MQ=23.68;MQ0=20;MQRankSum=0.372;QD=0.57;ReadPosRankSum=0.341;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,5:72:71:71,0,539 chrIV 981213 . C T 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.846;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=6.8532;MLEAC=1;MLEAF=0.500;MQ=23.44;MQ0=21;MQRankSum=-0.711;QD=0.56;ReadPosRankSum=0.550;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,5:71:70:70,0,530 chrIV 981214 . G A 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=5.8867;MLEAC=1;MLEAF=0.500;MQ=23.44;MQ0=21;MQRankSum=1.391;QD=0.60;ReadPosRankSum=0.744;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,5:71:73:73,0,555 chrIV 981218 . C T 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8920;MLEAC=1;MLEAF=0.500;MQ=22.72;MQ0=25;MQRankSum=1.448;QD=0.63;ReadPosRankSum=0.522;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,6:75:77:77,0,585 chrIV 981219 . T C 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.702;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9255;MLEAC=1;MLEAF=0.500;MQ=22.72;MQ0=25;MQRankSum=1.358;QD=0.63;ReadPosRankSum=0.493;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,6:75:77:77,0,551 chrIV 981221 . G A 66.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.698;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=22.81;MQ0=25;MQRankSum=-0.512;QD=0.87;ReadPosRankSum=0.629;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,6:76:96:96,0,586 chrIV 981246 . A T 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=22.29;MQ0=29;MQRankSum=0.169;QD=0.16;ReadPosRankSum=-2.632;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,5:77:42:42,0,808 chrIV 987126 . T C 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DP=37;Dels=0.00;FS=5.643;HaplotypeScore=21.4709;MLEAC=1;MLEAF=0.500;MQ=24.22;MQ0=14;MQRankSum=2.717;QD=0.70;ReadPosRankSum=0.852;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,4:37:56:56,0,330 chrIV 987133 . C T 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.268;DP=19;Dels=0.00;FS=9.745;HaplotypeScore=4.8190;MLEAC=1;MLEAF=0.500;MQ=33.27;MQ0=0;MQRankSum=1.342;QD=2.42;ReadPosRankSum=-0.417;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,5:19:76:76,0,242 chrIV 987143 . A G 84.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.77;MQ0=0;QD=16.90;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:117,12,0 chrIV 992912 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=21.08;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2921,306,0 chrIV 993025 . T A 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=131;Dels=0.00;FS=7.843;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.447;QD=19.99;ReadPosRankSum=2.412;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2652,270,0 chrIV 994251 . T A 967 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.021;DP=112;Dels=0.00;FS=221.713;HaplotypeScore=5.1408;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;MQRankSum=-1.050;QD=8.63;ReadPosRankSum=-8.768;SB=-1.178e-02 GT:AD:DP:GQ:PL 1/1:63,49:112:32:1000,32,0 chrIV 998484 . T C 5419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.038;QD=23.56;ReadPosRankSum=1.717;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:1,226:230:99:5419,556,0 chrIV 998628 . A T 5596.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=23.81;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5596,556,0 chrIV 1003824 . C T 4597.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.54;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4597,466,0 chrIV 1004080 . T G 3762.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3762,391,0 chrIV 1005656 . G A 4316.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.0728;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.38;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4316,462,0 chrIV 1005830 . C T 5247.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=26.24;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5247,526,0 chrIV 1006085 . G A 4351.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.7124;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.52;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4351,454,0 chrIV 1008496 . T C 2336 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2369,237,0 chrIV 1008697 . G A 923 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.07;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:96:956,96,0 chrIV 1008843 . G A 1339 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=23.49;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1372,138,0 chrIV 1008848 . C T 1328 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7853;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.51;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1361,138,0 chrIV 1010208 . T C 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=144;Dels=0.00;FS=7.257;HaplotypeScore=16.4229;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=2.169;QD=24.31;ReadPosRankSum=2.415;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:2,138:144:99:3500,361,0 chrIV 1011283 . G A 7426.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=18.9283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-3.949e+03 GT:AD:DP:GQ:PL 1/1:0,286:289:99:7426,727,0 chrIV 1011936 . A T 5463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.291;QD=21.94;ReadPosRankSum=2.410;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:2,247:249:99:5463,553,0 chrIV 1011970 . A G 5230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.671;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.188;QD=21.70;ReadPosRankSum=2.971;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:3,238:241:99:5230,535,0 chrIV 1012657 . G A 5935.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=22.6318;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.73;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5935,589,0 chrIV 1013236 . A T 1457 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1490,156,0 chrIV 1013385 . T G 1875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2814;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-1.142;QD=21.07;ReadPosRankSum=1.693;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1908,204,0 chrIV 1013924 . A G 2967 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6621;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.55;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3000,315,0 chrIV 1015219 . G A 5232.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.5416;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.56;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5232,511,0 chrIV 1016050 . T C 1764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.336;QD=22.91;ReadPosRankSum=2.290;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1797,186,0 chrIV 1016717 . C T 2007 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=0;QD=19.11;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2040,201,0 chrIV 1017610 . A C 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=3.819;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.013;QD=23.94;ReadPosRankSum=1.699;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2618,264,0 chrIV 1018330 . T C 3224.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.00;FS=3.037;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.967;QD=24.61;ReadPosRankSum=2.393;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3257,331,0 chrIV 1019340 . T C 3338.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3338,340,0 chrIV 1022417 . A G 4120.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.4752;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.52;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4120,418,0 chrIV 1022974 . A G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.945;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.922;QD=25.25;ReadPosRankSum=1.704;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3164,333,0 chrIV 1026528 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=16.3066;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.30;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3268,348,0 chrIV 1028509 . T C 4572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=178;Dels=0.00;FS=3.696;HaplotypeScore=11.9279;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.713;QD=25.69;ReadPosRankSum=1.713;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4572,463,0 chrIV 1036179 . A C 3515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.635;DP=149;Dels=0.00;FS=9.489;HaplotypeScore=19.2683;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.345;QD=23.59;ReadPosRankSum=2.952;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:3,143:149:99:3515,358,0 chrIV 1037205 . T C 5415.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.0903;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.19;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5415,553,0 chrIV 1037347 . A G 4019.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.0239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:4019,409,0 chrIV 1038210 . C G 2436 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2469,249,0 chrIV 1039385 . A G 3779.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.54;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3779,394,0 chrIV 1039745 . C A 1913 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1946,204,0 chrIV 1040867 . G A 5564.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=19.9737;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.84;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5564,547,0 chrIV 1040939 . A G 5606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=218;Dels=0.00;FS=10.115;HaplotypeScore=14.4274;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.329;QD=25.72;ReadPosRankSum=2.967;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:3,211:218:99:5606,568,0 chrIV 1042358 . T C 4419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=178;Dels=0.00;FS=3.035;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.863;QD=24.83;ReadPosRankSum=2.394;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4419,454,0 chrIV 1043299 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.52;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3421,337,0 chrIV 1043842 . A C 6145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.062;QD=24.98;ReadPosRankSum=1.718;SB=-3.106e+03 GT:AD:DP:GQ:PL 1/1:1,242:246:99:6145,619,0 chrIV 1044571 . G A 3794.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3692;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.96;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3794,376,0 chrIV 1044635 . C A 3711.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3711,367,0 chrIV 1047046 . G A 5385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.472;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.7602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.191;QD=26.79;ReadPosRankSum=-1.594;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:5385,509,0 chrIV 1047131 . C T 4256.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.05;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4256,445,0 chrIV 1051775 . G A 4361.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.91;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4361,424,0 chrIV 1051793 . C T 3582.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=19.57;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3582,355,0 chrIV 1051797 . A G 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=3.035;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=0.029;QD=18.83;ReadPosRankSum=1.674;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3371,334,0 chrIV 1052169 . A G 3124 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.82;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3157,319,0 chrIV 1052196 . A T 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.859;QD=24.39;ReadPosRankSum=1.650;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3130,319,0 chrIV 1052459 . C T 2759 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.07;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2792,285,0 chrIV 1052478 . G C 3095 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.76;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3128,316,0 chrIV 1052743 . G A 2154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.339;DP=97;Dels=0.00;FS=3.055;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=1.268;QD=22.21;ReadPosRankSum=-1.304;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2187,203,0 chrIV 1052882 . T C 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.794;QD=23.01;ReadPosRankSum=1.696;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:1,95:99:99:2311,243,0 chrIV 1052914 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=11.3498;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.94;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2523,246,0 chrIV 1053051 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=5.7766;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=26.54;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3344,328,0 chrIV 1053089 . A G 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=3.274;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.044;QD=25.43;ReadPosRankSum=1.703;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:3110,313,0 chrIV 1053134 . T A 3463.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.74;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3463,337,0 chrIV 1053228 . C T 4174.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.2335;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=25.93;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:4174,406,0 chrIV 1053274 . G A 4304.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.1074;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=24.04;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4304,430,0 chrIV 1053283 . G A 4260.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=22.66;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4260,424,0 chrIV 1053286 . C T 4197.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=22.44;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4197,415,0 chrIV 1053397 . G A 4261.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.8967;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4261,418,0 chrIV 1053747 . A G 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.7134;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.549;QD=23.90;ReadPosRankSum=1.676;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:3020,301,0 chrIV 1053820 . C T 3421.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=24.26;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3421,337,0 chrIV 1053840 . C T 3417.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.76;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3417,331,0 chrIV 1053946 . C T 2780 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.8211;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.79;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2813,280,0 chrIV 1054003 . A C 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=4.800;HaplotypeScore=3.4890;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-0.057;QD=24.61;ReadPosRankSum=1.709;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3740,382,0 chrIV 1054018 . A G 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=4.493;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=0.918;QD=25.82;ReadPosRankSum=1.649;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4286,424,0 chrIV 1054225 . A G 4632.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.0722;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.51;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4632,484,0 chrIV 1054527 . T G 3977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=190;Dels=0.00;FS=5.666;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-1.456;QD=20.93;ReadPosRankSum=1.677;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:3977,403,0 chrIV 1054662 . A C 2689 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.18;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2722,279,0 chrIV 1054717 . T C 1364 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=18.43;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1397,144,0 chrIV 1055064 . C T 2198 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=13.8145;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;QD=26.17;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2231,225,0 chrIV 1055184 . G A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=24.0633;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=25.60;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3737,376,0 chrIV 1055277 . C T 4843.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.46;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4843,490,0 chrIV 1055412 . A G 6104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=240;Dels=0.00;FS=12.439;HaplotypeScore=15.2531;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.736;QD=25.43;ReadPosRankSum=2.912;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:3,237:240:99:6104,616,0 chrIV 1055562 . G A 7119.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=21.6204;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.16;SB=-4.053e+03 GT:AD:DP:GQ:PL 1/1:0,281:283:99:7119,709,0 chrIV 1055660 . C A 6202.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.02;SB=-3.103e+03 GT:AD:DP:GQ:PL 1/1:0,292:295:99:6202,631,0 chrIV 1055678 . T C 5305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=14.1463;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.468;QD=18.55;ReadPosRankSum=1.696;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:1,284:286:99:5305,556,0 chrIV 1055826 . T G 5465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=240;Dels=0.00;FS=4.175;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.888;QD=22.77;ReadPosRankSum=1.688;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:5465,580,0 chrIV 1055999 . A C 5049.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=25.50;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:5049,529,0 chrIV 1056052 . A G 4146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=176;Dels=0.00;FS=7.212;HaplotypeScore=15.0059;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=-1.389;QD=23.56;ReadPosRankSum=2.394;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4146,433,0 chrIV 1056091 . G A 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.388;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.9858;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=0.939;QD=22.34;ReadPosRankSum=1.679;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2960,300,0 chrIV 1056097 . A G 2822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=3.245;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=0.508;QD=21.22;ReadPosRankSum=1.706;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2855,300,0 chrIV 1056135 . C T 2494 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=12.8318;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=18.34;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2527,255,0 chrIV 1056271 . T C 2968 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=18.32;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3001,306,0 chrIV 1056272 . T C 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=7.839;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;MQRankSum=-1.706;QD=18.61;ReadPosRankSum=2.419;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3066,312,0 chrIV 1056299 . C A 2407 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=16.60;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2440,255,0 chrIV 1056324 . C T 2166 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=16.41;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2199,222,0 chrIV 1056332 . T C 2282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;MQRankSum=-0.535;QD=16.78;ReadPosRankSum=1.707;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2315,237,0 chrIV 1056448 . T C 3848.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.4932;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.50;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3848,391,0 chrIV 1056778 . T C 6485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=278;Dels=0.00;FS=6.006;HaplotypeScore=17.1841;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.361;QD=23.33;ReadPosRankSum=2.938;SB=-3.450e+03 GT:AD:DP:GQ:PL 1/1:3,272:278:99:6485,670,0 chrIV 1057123 . T C 6399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.768;DP=266;Dels=0.00;FS=10.932;HaplotypeScore=16.5583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.100;QD=24.06;ReadPosRankSum=3.773;SB=-3.025e+03 GT:AD:DP:GQ:PL 1/1:5,261:266:99:6399,667,0 chrIV 1057366 . C T 4981.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.4194;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.50;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4981,499,0 chrIV 1057426 . C T 4515.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.7807;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.37;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4515,463,0 chrIV 1057517 . G A 4361.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=25.35;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4361,433,0 chrIV 1057526 . T C 4151.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.5903;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=23.45;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4151,418,0 chrIV 1057573 . T C 2948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=4.011;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;MQRankSum=-1.426;QD=21.21;ReadPosRankSum=1.707;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,135:139:99:2981,327,0 chrIV 1057601 . C T 2352 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=21.98;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2385,246,0 chrIV 1057603 . C T 2336 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=21.43;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2369,246,0 chrIV 1057627 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=22.57;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2290,243,0 chrIV 1057712 . G A 1742 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=23.54;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1775,177,0 chrIV 1057776 . G A 1306 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=20.09;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1339,144,0 chrIV 1057799 . T C 1024 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=0;QD=17.66;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1057,123,0 chrIV 1057818 . T A 833 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.66;MQ0=0;QD=16.02;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:866,99,0 chrIV 1057855 . T C 354 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;QD=12.21;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:48:387,48,0 chrIV 1057856 . G A 314 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;QD=10.83;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:42:347,42,0 chrIV 1057925 . T A 344 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.93;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:39:377,39,0 chrIV 1057928 . A G 369 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=23.06;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:42:402,42,0 chrIV 1057986 . A G 889 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.39;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:96:922,96,0 chrIV 1058083 . A G 1324 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.48;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1357,138,0 chrIV 1058179 . A G 2752 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=25.72;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2785,280,0 chrIV 1058335 . G A 4007.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.71;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4007,388,0 chrIV 1058545 . G T 5221.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.3766;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.98;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5221,529,0 chrIV 1058617 . C T 3387.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=10.8169;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.17;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3387,334,0 chrIV 1058864 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.453;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.894;QD=26.47;ReadPosRankSum=-0.112;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3282,294,0 chrIV 1059080 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.16;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2493,258,0 chrIV 1059094 . C T 2736 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.59;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2769,288,0 chrIV 1059143 . G A 2623 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.42;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2656,270,0 chrIV 1059399 . G C 2808 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.21;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2841,291,0 chrIV 1059459 . A C 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.505;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.160;QD=24.71;ReadPosRankSum=1.705;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3245,325,0 chrIV 1059662 . C T 4428.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.9188;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=25.60;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4428,445,0 chrIV 1059944 . G A 1890.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.681;DP=292;Dels=0.01;FS=4.588;HaplotypeScore=43.7169;MLEAC=1;MLEAF=0.500;MQ=42.15;MQ0=0;MQRankSum=0.244;QD=6.47;ReadPosRankSum=-5.781;SB=-1.557e+03 GT:AD:DP:GQ:PL 0/1:139,150:290:99:1920,0,606 chrIV 1059947 . A G 1779.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.574;DP=298;Dels=0.00;FS=5.279;HaplotypeScore=53.5833;MLEAC=1;MLEAF=0.500;MQ=42.58;MQ0=0;MQRankSum=-2.425;QD=5.97;ReadPosRankSum=-6.622;SB=-1.439e+03 GT:AD:DP:GQ:PL 0/1:149,148:298:99:1809,0,874 chrIV 1059954 . A G 1716.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.589;DP=297;Dels=0.02;FS=4.612;HaplotypeScore=53.6826;MLEAC=1;MLEAF=0.500;MQ=42.94;MQ0=0;MQRankSum=-2.064;QD=5.78;ReadPosRankSum=-9.971;SB=-1.208e+03 GT:AD:DP:GQ:PL 0/1:160,132:292:99:1746,0,1196 chrIV 1059955 . A G 1740.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.357;DP=295;Dels=0.00;FS=1.946;HaplotypeScore=50.9343;MLEAC=1;MLEAF=0.500;MQ=42.81;MQ0=0;MQRankSum=-6.483;QD=5.90;ReadPosRankSum=-9.332;SB=-1.306e+03 GT:AD:DP:GQ:PL 0/1:168,125:294:99:1770,0,1314 chrIV 1059983 . A T 3048 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.6386;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=16.93;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3081,304,0 chrIV 1060010 . T C 4185.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.7636;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.87;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,179:183:99:4185,436,0 chrIV 1063000 . C T 4663.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=24.16;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4663,454,0 chrIV 1063008 . G A 4084.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=21.84;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4084,418,0 chrIV 1063031 . C G 3698.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.43;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3698,387,0 chrIV 1063052 . T C 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.394;DP=180;Dels=0.00;FS=13.062;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-1.537;QD=18.88;ReadPosRankSum=4.439;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:7,172:180:99:3398,352,0 chrIV 1065086 . A G 4177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.709;DP=176;Dels=0.00;FS=2.510;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.177;QD=23.73;ReadPosRankSum=2.114;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:4177,405,0 chrIV 1066882 . A G 5444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=4.120;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.289;QD=26.56;ReadPosRankSum=1.715;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:5444,562,0 chrIV 1067784 . C T 3931.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.4267;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.86;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3931,391,0 chrIV 1070140 . C T 3050 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0964;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=24.21;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3083,301,0 chrIV 1071771 . G A 5999.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5999,616,0 chrIV 1072384 . G C 4526.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.95;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4526,483,0 chrIV 1072576 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.55;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3189,327,0 chrIV 1072962 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.3022;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3253,322,0 chrIV 1075948 . G T 2777 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.71;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2810,285,0 chrIV 1076408 . A G 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=157;Dels=0.00;FS=3.239;HaplotypeScore=13.3984;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.600;QD=25.06;ReadPosRankSum=1.710;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3934,403,0 chrIV 1078921 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.04;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1519,147,0 chrIV 1079225 . C A 3569.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2226;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=25.49;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3569,349,0 chrIV 1079855 . A G 5682.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=11.9171;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.87;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5682,586,0 chrIV 1080523 . C T 4308.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.4653;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.20;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4308,430,0 chrIV 1084297 . G A 4215.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.36;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4215,427,0 chrIV 1090085 . T C 1969 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.4186;MLEAC=2;MLEAF=1.00;MQ=60.89;MQ0=0;QD=23.16;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2002,207,0 chrIV 1090291 . T C 4422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.600;QD=25.27;ReadPosRankSum=2.337;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:4422,448,0 chrIV 1091087 . T C 4627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=196;Dels=0.00;FS=4.467;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.391;QD=23.61;ReadPosRankSum=1.696;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:1,192:196:99:4627,481,0 chrIV 1091200 . C T 4009.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4009,417,0 chrIV 1092292 . T C 3874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.022;QD=24.83;ReadPosRankSum=1.688;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3874,403,0 chrIV 1092548 . C T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.3636;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.92;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3323,322,0 chrIV 1095022 . A G 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.346;QD=24.79;ReadPosRankSum=1.681;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3347,343,0 chrIV 1095230 . T G 3132 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3165,319,0 chrIV 1095542 . T G 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=3.203;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;MQRankSum=0.316;QD=25.86;ReadPosRankSum=1.672;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:3007,301,0 chrIV 1102257 . T C 1706 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1739,177,0 chrIV 1102674 . G A 4318.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.17;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4318,448,0 chrIV 1102795 . T G 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=3.119;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.873;QD=26.01;ReadPosRankSum=1.703;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:3206,328,0 chrIV 1103400 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.14;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3338,328,0 chrIV 1103480 . C T 3005 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.85;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3038,301,0 chrIV 1103531 . A G 2796 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2829,294,0 chrIV 1104014 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.00;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:3049,298,0 chrIV 1104203 . T C 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=112;Dels=0.00;FS=8.141;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.666;QD=24.15;ReadPosRankSum=2.382;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:2,107:112:99:2738,271,0 chrIV 1104401 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=26.14;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3529,349,0 chrIV 1104446 . G A 3867.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.79;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3867,405,0 chrIV 1104470 . C T 3763.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=26.13;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3763,373,0 chrIV 1104782 . A G 3797.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.2631;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.88;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3797,382,0 chrIV 1104914 . A G 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-1.326;QD=23.10;ReadPosRankSum=1.651;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3013,303,0 chrIV 1104929 . C T 3101 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.67;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3134,313,0 chrIV 1104966 . T G 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=133;Dels=0.00;FS=2.932;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.999;QD=22.85;ReadPosRankSum=2.412;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:2,129:133:99:3072,321,0 chrIV 1105164 . C T 5127.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=26.56;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5127,511,0 chrIV 1105249 . A T 4503.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.47;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4503,460,0 chrIV 1105780 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.75;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2943,292,0 chrIV 1106241 . T C 5377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.7584;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.240;QD=27.57;ReadPosRankSum=1.679;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:5377,541,0 chrIV 1106617 . C G 3119 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.95;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3152,325,0 chrIV 1107083 . C T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.79;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3247,325,0 chrIV 1107118 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.28;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3264,322,0 chrIV 1107137 . T C 3328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=3.670;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.844;QD=21.06;ReadPosRankSum=1.665;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3328,337,0 chrIV 1107150 . G C 3658.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.27;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3658,370,0 chrIV 1107444 . C T 3825.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.1093;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.68;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3825,394,0 chrIV 1107805 . G A 6640.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=27.55;SB=-3.490e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:6640,658,0 chrIV 1108058 . T C 3660.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.02;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3660,373,0 chrIV 1108114 . T C 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=175;Dels=0.00;FS=8.461;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.038;QD=25.56;ReadPosRankSum=2.421;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:4473,454,0 chrIV 1108484 . A G 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=143;Dels=0.02;FS=2.984;HaplotypeScore=12.3052;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.799;QD=23.55;ReadPosRankSum=2.379;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3368,349,0 chrIV 1108596 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.02;FS=0.000;HaplotypeScore=168.2479;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=16.04;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2536,255,0 chrIV 1108662 . G A 2995 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.0215;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=19.70;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3028,301,0 chrIV 1108673 . C G 3058 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=19.48;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3091,318,0 chrIV 1108696 . C G 4049.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.62;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4049,406,0 chrIV 1109358 . T C 5289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=219;Dels=0.00;FS=6.324;HaplotypeScore=16.7106;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.622;QD=24.15;ReadPosRankSum=2.416;SB=-2.993e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:5289,544,0 chrIV 1109568 . T C 5914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.250;DP=241;Dels=0.00;FS=8.689;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.338;QD=24.54;ReadPosRankSum=3.417;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:4,236:241:99:5914,610,0 chrIV 1109736 . A C 4208.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.32;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4208,418,0 chrIV 1109781 . A G 4296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.964;QD=24.41;ReadPosRankSum=1.693;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4296,430,0 chrIV 1109890 . T G 1864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.259;DP=87;Dels=0.00;FS=5.971;HaplotypeScore=4.3038;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=0.577;QD=21.43;ReadPosRankSum=1.653;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1897,171,0 chrIV 1111002 . G A 4761.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.9588;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4761,502,0 chrIV 1111246 . G A 4660.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.6336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4660,478,0 chrIV 1112991 . G A 3942.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.7579;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.11;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3942,388,0 chrIV 1113023 . T A 3715.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3715,376,0 chrIV 1113112 . C T 4768.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.1737;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.63;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4768,475,0 chrIV 1113224 . C T 4958.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=27.39;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4958,502,0 chrIV 1113545 . C A 3099 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.6200;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=20.80;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3132,316,0 chrIV 1113548 . T C 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.9332;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;MQRankSum=0.472;QD=20.19;ReadPosRankSum=1.665;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3162,322,0 chrIV 1113753 . A G 4087.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.3150;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.96;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4087,412,0 chrIV 1113766 . T C 3808.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.3709;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.89;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3808,399,0 chrIV 1113867 . C T 4432.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.0116;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.70;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4432,439,0 chrIV 1116586 . A G 3568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.377;DP=152;Dels=0.00;FS=5.256;HaplotypeScore=14.8501;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.311;QD=23.47;ReadPosRankSum=3.400;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:4,146:152:99:3568,361,0 chrIV 1116905 . A G 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.697;DP=169;Dels=0.00;FS=19.836;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.536;QD=25.14;ReadPosRankSum=3.660;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:5,164:169:99:4248,442,0 chrIV 1117206 . T A 5756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=228;Dels=0.00;FS=3.848;HaplotypeScore=11.9861;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.443;QD=25.25;ReadPosRankSum=1.717;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5756,580,0 chrIV 1123442 . G C 3764.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.67;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3764,382,0 chrIV 1123610 . T G 5105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=231;Dels=0.00;FS=2.849;HaplotypeScore=15.3021;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.681;QD=22.10;ReadPosRankSum=2.428;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:2,227:231:99:5105,535,0 chrIV 1124465 . G A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.35;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3549,361,0 chrIV 1125356 . C A 7715.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=12.7224;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.15;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,294:295:99:7715,760,0 chrIV 1127544 . C G 6186.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=19.4407;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.79;SB=-3.348e+03 GT:AD:DP:GQ:PL 1/1:0,254:260:99:6186,625,0 chrIV 1127922 . C T 7891.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=19.9116;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.63;SB=-4.295e+03 GT:AD:DP:GQ:PL 1/1:0,332:334:99:7891,787,0 chrIV 1128108 . G A 5759.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=15.4223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5759,601,0 chrIV 1128165 . T C 4779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=221;Dels=0.00;FS=4.306;HaplotypeScore=14.7989;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.136;QD=21.62;ReadPosRankSum=1.685;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4779,505,0 chrIV 1128339 . C T 6156.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=19.7079;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.31;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:6156,625,0 chrIV 1128837 . A G 4258.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.2673;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.89;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4258,439,0 chrIV 1129092 . G A 3531.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0343;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.69;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3531,352,0 chrIV 1129597 . G A 5037.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.0204;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=27.08;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:5037,487,0 chrIV 1130680 . G A 2136 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.6220;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2169,216,0 chrIV 1134092 . C T 3577.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=12.3040;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.55;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3577,343,0 chrIV 1135584 . C T 2511 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.5010;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.65;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2544,250,0 chrIV 1136639 . T C 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.460;QD=25.64;ReadPosRankSum=1.705;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,127:133:99:3410,351,0 chrIV 1137761 . G A 4634.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.94;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4634,457,0 chrIV 1139004 . C G 3211.99 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.1580;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.11;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3245,331,0 chrIV 1143075 . A G 2529 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.55;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2562,264,0 chrIV 1144484 . C T 4231.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=28.21;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:4231,415,0 chrIV 1149047 . A C 5952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=262;Dels=0.00;FS=3.434;HaplotypeScore=21.2851;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.316;QD=22.72;ReadPosRankSum=1.719;SB=-3.347e+03 GT:AD:DP:GQ:PL 1/1:1,257:262:99:5952,607,0 chrIV 1154148 . T C 1384 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.88;MQ0=0;QD=26.62;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1417,144,0 chrIV 1154160 . A G 1213 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;QD=24.26;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1246,132,0 chrIV 1154205 . G A 505 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.67;MQ0=0;QD=22.95;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:51:538,51,0 chrIV 1154297 . G A 329 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.44;MQ0=2;QD=15.67;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:36:362,36,0 chrIV 1157271 . A G 2163 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2196,222,0 chrIV 1159971 . G A 209.01 filter AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=8.47;MQ0=205;QD=0.80;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,261:262:27:242,27,0 chrIV 1159979 . G C 74.51 filter AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.21;MQ0=219;QD=0.28;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,260:263:12:107,12,0 chrIV 1161556 . G A 2217 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.59;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2250,222,0 chrIV 1161568 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.31;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2574,253,0 chrIV 1165262 . T A 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=128;Dels=0.00;FS=10.179;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.298;QD=21.58;ReadPosRankSum=2.392;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2795,291,0 chrIV 1165439 . A G 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=110;Dels=0.00;FS=4.424;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.411;QD=25.33;ReadPosRankSum=0.834;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2819,291,0 chrIV 1167913 . A G 4351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.300;DP=187;Dels=0.00;FS=12.375;HaplotypeScore=16.7557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.653;QD=23.27;ReadPosRankSum=3.413;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:4,182:187:99:4351,448,0 chrIV 1167961 . A G 5095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.969;DP=228;Dels=0.00;FS=11.156;HaplotypeScore=7.9860;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.128;QD=22.35;ReadPosRankSum=2.943;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:3,224:228:99:5095,532,0 chrIV 1171430 . G C 5759.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=17.4462;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.49;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:0,264:268:99:5759,613,0 chrIV 1172908 . T C 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=164;Dels=0.00;FS=3.230;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.321;QD=21.51;ReadPosRankSum=1.711;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3528,366,0 chrIV 1172914 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.44;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3702,364,0 chrIV 1173007 . G A 6131.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=12.0256;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.20;SB=-3.116e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:6131,631,0 chrIV 1173622 . G A 3533.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=24.03;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3533,343,0 chrIV 1173661 . G C 2319 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=17.18;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2352,255,0 chrIV 1173670 . C T 2349 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=17.53;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2382,240,0 chrIV 1173678 . T C 2256 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=16.96;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2289,243,0 chrIV 1173894 . C T 5025.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.3507;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=26.04;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5025,499,0 chrIV 1174054 . C A 5292.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=24.73;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5292,526,0 chrIV 1174213 . T C 5734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=247;Dels=0.01;FS=4.665;HaplotypeScore=50.2582;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-1.148;QD=23.21;ReadPosRankSum=1.704;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:1,242:244:99:5734,601,0 chrIV 1174270 . T C 3834.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.01;FS=0.000;HaplotypeScore=18.4909;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=21.91;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3834,403,0 chrIV 1174282 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=21.62;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3459,352,0 chrIV 1174395 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.56;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3675,382,0 chrIV 1174496 . C G 2249 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=21.22;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2282,231,0 chrIV 1174544 . C T 3088 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=23.94;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3121,316,0 chrIV 1174551 . C T 3071 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=24.18;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3104,301,0 chrIV 1174575 . T C 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=4.271;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-1.071;QD=21.96;ReadPosRankSum=1.706;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2910,297,0 chrIV 1174611 . A G 2501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.281;QD=20.01;ReadPosRankSum=1.704;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2534,264,0 chrIV 1174695 . C T 2718 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=23.63;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2751,277,0 chrIV 1174702 . C T 2627 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=21.71;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2660,273,0 chrIV 1174722 . T C 2425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=-1.108;QD=18.23;ReadPosRankSum=2.412;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2458,249,0 chrIV 1175302 . C T 1546 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=28.63;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1579,156,0 chrIV 1178350 . C A 1071 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=10.40;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,99:103:99:1104,120,0 chrIV 1181379 . T C 948 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.17;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:981,102,0 chrIV 1181427 . A T 2224 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.80;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2257,225,0 chrIV 1181621 . A G 3458.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0269;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.40;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3458,357,0 chrIV 1182010 . T C 4258.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.637;DP=207;Dels=0.00;FS=19.953;HaplotypeScore=21.3064;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.324;QD=20.57;ReadPosRankSum=3.744;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:5,200:207:99:4258,439,0 chrIV 1182098 . T C 4920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.766;QD=25.76;ReadPosRankSum=1.696;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4920,499,0 chrIV 1182193 . T A 4690.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8096;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.50;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4690,469,0 chrIV 1183454 . C T 4354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=190;Dels=0.00;FS=3.680;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.311;QD=22.92;ReadPosRankSum=1.622;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4354,436,0 chrIV 1184604 . T A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3389,334,0 chrIV 1184776 . C T 4807.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.0695;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.13;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4807,490,0 chrIV 1184872 . T C 5013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.296;DP=204;Dels=0.00;FS=8.298;HaplotypeScore=17.6069;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.032;QD=24.57;ReadPosRankSum=3.408;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:4,198:204:99:5013,514,0 chrIV 1185640 . G A 5476.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.2495;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.20;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5476,553,0 chrIV 1186629 . T C 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;DP=130;Dels=0.00;FS=6.042;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.184;QD=24.70;ReadPosRankSum=2.848;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:3,123:130:99:3244,330,0 chrIV 1187416 . T C 2912 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2945,298,0 chrIV 1188416 . T C 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.327;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.585;QD=24.58;ReadPosRankSum=1.683;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3491,352,0 chrIV 1188878 . C T 6072.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.8686;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=27.35;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:6072,601,0 chrIV 1189030 . A T 4557.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.2169;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.73;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4557,442,0 chrIV 1189130 . C T 4091.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.0239;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.95;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4091,409,0 chrIV 1189463 . C T 2786 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.41;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2819,291,0 chrIV 1189499 . T C 2713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.093;QD=24.22;ReadPosRankSum=1.701;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2746,279,0 chrIV 1189652 . T C 2829 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.60;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2862,288,0 chrIV 1190196 . T C 2416 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.84;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2449,249,0 chrIV 1190854 . G A 3815.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=17.3630;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.77;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3815,376,0 chrIV 1198230 . G C 4059.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.9021;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:4059,424,0 chrIV 1201621 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.73;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3018,309,0 chrIV 1204591 . T C 3699.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.34;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3699,376,0 chrIV 1217031 . T C 4178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.296;QD=25.32;ReadPosRankSum=1.711;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4178,421,0 chrIV 1217826 . T C 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.756;QD=26.20;ReadPosRankSum=1.669;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2915,297,0 chrIV 1219509 . T C 1889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.019;DP=82;Dels=0.00;FS=5.358;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.512;QD=23.04;ReadPosRankSum=2.757;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:4,77:82:99:1922,201,0 chrIV 1219871 . C T 2040 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0269;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2073,207,0 chrIV 1220178 . A G 3604.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.68;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3604,364,0 chrIV 1220405 . C G 3787.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.43;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3787,376,0 chrIV 1220697 . G A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.03;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3325,325,0 chrIV 1225501 . G A 3274.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3274,322,0 chrIV 1235338 . T C 3858.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=26.24;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3858,388,0 chrIV 1235582 . G A 4660.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.0197;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.07;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4660,469,0 chrIV 1235594 . A G 4380.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.1849;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.79;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4380,448,0 chrIV 1238608 . C T 3691.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=24.12;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3691,376,0 chrIV 1238647 . G A 2677 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=20.59;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2710,276,0 chrIV 1238648 . G A 2830 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.94;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2863,280,0 chrIV 1239039 . T C 156.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.504;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=8.9565;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.042;QD=9.75;ReadPosRankSum=-1.736;SB=4.70 GT:AD:DP:GQ:PL 1/1:1,14:16:21:189,21,0 chrIV 1239087 . T C 699 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:75:732,75,0 chrIV 1239354 . C A 2094 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.54;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2127,210,0 chrIV 1239990 . T A 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.260;QD=23.75;ReadPosRankSum=1.654;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:1078,114,0 chrIV 1240134 . A G 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=3.979;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.155;QD=26.53;ReadPosRankSum=1.675;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1625,168,0 chrIV 1240175 . G A 1704 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.34;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1737,171,0 chrIV 1240227 . T C 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.490;QD=24.97;ReadPosRankSum=2.410;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:3104,315,0 chrIV 1240251 . C T 3596.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.0837;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.69;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3596,358,0 chrIV 1240320 . C T 3997.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.12;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3997,394,0 chrIV 1240455 . T C 4856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=190;Dels=0.00;FS=6.072;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.314;QD=25.56;ReadPosRankSum=2.931;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:3,186:190:99:4856,487,0 chrIV 1240551 . T C 4566.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=15.4170;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.85;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4566,475,0 chrIV 1240919 . C T 1890 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=11.8183;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.77;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1923,192,0 chrIV 1240974 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;QD=0.45;SB=-1.588e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:6:55,6,0 chrIV 1241008 . C G 571 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=10.98;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:60:604,60,0 chrIV 1241016 . C T 610 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=12.98;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:63:643,63,0 chrIV 1241303 . T C 2036 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.24;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2069,216,0 chrIV 1243619 . C T 1631 filter AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=5.0711;MLEAC=2;MLEAF=1.00;MQ=13.82;MQ0=149;QD=6.97;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:66,168:234:99:1664,183,0 chrIV 1248530 . C G 4470.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.5071;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.69;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4470,451,0 chrIV 1248941 . G A 6262.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.53;SB=-3.439e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:6262,607,0 chrIV 1249378 . T C 4951.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.7136;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4951,496,0 chrIV 1250650 . T C 4546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=3.158;HaplotypeScore=10.3998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.039;QD=24.98;ReadPosRankSum=1.694;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:4546,463,0 chrIV 1252116 . A G 4518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.415;QD=26.12;ReadPosRankSum=1.712;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4518,457,0 chrIV 1252453 . C T 3058 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.82;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3091,298,0 chrIV 1253397 . T C 5256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.041;QD=24.68;ReadPosRankSum=1.716;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:5256,541,0 chrIV 1256509 . A G 4467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.993;DP=185;Dels=0.00;FS=15.417;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.822;QD=24.15;ReadPosRankSum=4.134;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:6,178:185:99:4467,466,0 chrIV 1259970 . G C 2831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-1.128;QD=23.20;ReadPosRankSum=-1.901;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2864,286,0 chrIV 1259982 . A G 2656 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.59;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2689,279,0 chrIV 1261102 . A G 4001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.2022;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.292;QD=22.99;ReadPosRankSum=2.421;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:4001,409,0 chrIV 1261386 . A G 4805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=184;Dels=0.00;FS=9.448;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.839;QD=26.11;ReadPosRankSum=2.396;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4805,484,0 chrIV 1265474 . T A 5277.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.7035;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.39;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5277,526,0 chrIV 1267740 . A G 5785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=240;Dels=0.00;FS=2.803;HaplotypeScore=14.4169;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.488;QD=24.10;ReadPosRankSum=1.022;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:2,237:240:99:5785,598,0 chrIV 1267782 . T A 4429.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=16.0073;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4429,439,0 chrIV 1267950 . T C 4090.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.94;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4090,424,0 chrIV 1267989 . A T 4179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.626;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.257;QD=23.22;ReadPosRankSum=2.771;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:4179,400,0 chrIV 1268154 . T C 4012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.3539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.454;QD=23.74;ReadPosRankSum=1.711;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:4012,412,0 chrIV 1268315 . T C 3124 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3157,322,0 chrIV 1268647 . C A 3826.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.57;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3826,385,0 chrIV 1271701 . T A 3875.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.0095;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=23.63;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3875,414,0 chrIV 1271755 . G C 3380.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=22.68;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3380,357,0 chrIV 1271758 . G A 3660.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=24.40;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3660,364,0 chrIV 1271812 . C T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=25.77;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3839,385,0 chrIV 1271941 . C T 2897 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=24.14;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2930,286,0 chrIV 1271979 . A G 2943 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=24.73;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2976,298,0 chrIV 1271999 . A G 3154 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=24.45;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3187,322,0 chrIV 1272164 . G A 1551 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.81;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1584,156,0 chrIV 1272748 . T C 4917.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.88;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4917,496,0 chrIV 1273219 . A T 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.560;DP=155;Dels=0.00;FS=8.039;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.056;QD=25.57;ReadPosRankSum=3.793;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:5,150:155:99:3963,400,0 chrIV 1273337 . A G 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=155;Dels=0.00;FS=2.933;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.189;QD=24.09;ReadPosRankSum=2.354;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3734,379,0 chrIV 1273367 . C T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.86;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3655,367,0 chrIV 1273683 . C A 2778 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.1239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2811,279,0 chrIV 1273940 . A G 2741 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.92;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2774,279,0 chrIV 1274092 . C T 2466 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.26;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2499,244,0 chrIV 1274124 . G C 2818 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=18.4226;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.68;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2851,289,0 chrIV 1274423 . C T 2147 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.86;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2180,228,0 chrIV 1274484 . G A 1563 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.99;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1596,162,0 chrIV 1274509 . T A 1678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.514;DP=77;Dels=0.00;FS=5.278;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=-0.224;QD=21.79;ReadPosRankSum=2.751;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:3,74:77:99:1711,177,0 chrIV 1274626 . T C 2090 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=25.49;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2123,213,0 chrIV 1274677 . A G 1852 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=24.37;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1885,189,0 chrIV 1274715 . G A 2054 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=23.61;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2087,210,0 chrIV 1274773 . G A 2723 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=22.50;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2756,288,0 chrIV 1274775 . C T 2788 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;QD=23.23;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2821,285,0 chrIV 1274778 . T C 2715 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=21.55;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2748,285,0 chrIV 1274808 . T C 2354 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=18.25;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2387,246,0 chrIV 1274844 . T C 1434 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=3.207;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;MQRankSum=1.609;QD=12.58;ReadPosRankSum=1.701;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:1467,153,0 chrIV 1274848 . C T 1199 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0502;MLEAC=2;MLEAF=1.00;MQ=37.70;MQ0=0;QD=10.34;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1232,132,0 chrIV 1274852 . A G 1378 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=115;Dels=0.00;FS=6.087;HaplotypeScore=3.3162;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;MQRankSum=-0.991;QD=11.98;ReadPosRankSum=2.939;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:1411,144,0 chrIV 1274867 . A G 1671 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=14.66;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1704,177,0 chrIV 1274975 . A G 2687 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=24.88;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2720,276,0 chrIV 1274988 . G A 2316 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=22.93;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2349,234,0 chrIV 1275009 . A T 1886 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=21.43;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1919,195,0 chrIV 1275068 . A G 2138 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=19.44;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2171,225,0 chrIV 1275069 . A G 2228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;MQRankSum=-1.420;QD=19.54;ReadPosRankSum=1.701;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,110:114:99:2261,231,0 chrIV 1275540 . T C 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=22.7054;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.754;QD=23.66;ReadPosRankSum=1.690;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3881,400,0 chrIV 1275780 . G A 3730.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.87;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3730,382,0 chrIV 1276281 . T C 1729 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.58;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1762,183,0 chrIV 1276339 . C A 2375 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=25.54;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2408,243,0 chrIV 1276486 . A G 2428 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2461,255,0 chrIV 1276608 . A G 2907 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.7287;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=19.91;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2940,303,0 chrIV 1277231 . C A 3943.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.2451;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;QD=27.19;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3943,382,0 chrIV 1277282 . G T 3591.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3591,361,0 chrIV 1277377 . A T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.63;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3439,352,0 chrIV 1277378 . T C 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=3.487;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-1.260;QD=21.28;ReadPosRankSum=1.710;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3319,348,0 chrIV 1277726 . G A 3939.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.54;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3939,388,0 chrIV 1278481 . C G 4401.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.6032;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.57;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4401,454,0 chrIV 1280606 . G A 3431.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=24.68;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3431,340,0 chrIV 1280622 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6732;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.51;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2869,291,0 chrIV 1282163 . A G 4299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.3037;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.822;QD=24.02;ReadPosRankSum=1.713;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4299,442,0 chrIV 1283387 . T C 4558.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4558,460,0 chrIV 1283766 . G T 1366 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1399,150,0 chrIV 1284111 . T A 1423 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.85;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1456,153,0 chrIV 1285878 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=144;Dels=0.00;FS=5.811;HaplotypeScore=7.8891;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.448;QD=23.10;ReadPosRankSum=2.951;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3326,340,0 chrIV 1286166 . G A 4428.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.6721;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.02;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4428,439,0 chrIV 1291676 . C T 5886.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.4546;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.59;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5886,583,0 chrIV 1294685 . T G 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.1028;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.438;QD=26.14;ReadPosRankSum=1.692;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4574,457,0 chrIV 1301046 . A G 4291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.0073;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.370;QD=24.66;ReadPosRankSum=1.692;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4291,430,0 chrIV 1302530 . T C 1740 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1773,186,0 chrIV 1302786 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1731,180,0 chrIV 1305496 . A G 2722 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=25.44;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2755,285,0 chrIV 1305577 . A G 2780 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.23;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2813,285,0 chrIV 1307724 . A G 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.474;DP=936;DS;Dels=0.00;FS=17.785;HaplotypeScore=7.6218;MLEAC=1;MLEAF=0.500;MQ=35.35;MQ0=83;MQRankSum=3.978;QD=0.08;ReadPosRankSum=3.804;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:825,107:936:99:104,0,13142 chrIV 1307799 . T C 282.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.207;DP=791;DS;Dels=0.00;FS=43.960;HaplotypeScore=86.1259;MLEAC=1;MLEAF=0.500;MQ=35.84;MQ0=189;MQRankSum=-3.847;QD=0.36;ReadPosRankSum=-1.826;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:664,125:791:99:312,0,4931 chrIV 1307883 . T C 4585.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.410;DP=1000;DS;Dels=0.00;FS=822.465;HaplotypeScore=55.7593;MLEAC=2;MLEAF=1.00;MQ=20.62;MQ0=281;MQRankSum=11.730;QD=4.59;ReadPosRankSum=-0.145;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:248,751:1000:99:4585,114,0 chrIV 1307967 . T C 991.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.723;DP=865;DS;Dels=0.00;FS=503.681;HaplotypeScore=43.7369;MLEAC=1;MLEAF=0.500;MQ=13.20;MQ0=415;MQRankSum=8.747;QD=1.15;ReadPosRankSum=-1.984;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:658,206:865:99:1021,0,932 chrIV 1308003 . A G 525.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.541;DP=284;DS;Dels=0.00;FS=82.815;HaplotypeScore=31.5536;MLEAC=1;MLEAF=0.500;MQ=16.87;MQ0=116;MQRankSum=-3.658;QD=1.85;ReadPosRankSum=4.907;SB=-2.350e+02 GT:AD:DP:GQ:PL 0/1:81,203:284:99:555,0,101 chrIV 1308006 . A T 621 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=7.105;DP=180;DS;Dels=0.00;FS=30.395;HaplotypeScore=20.0800;MLEAC=2;MLEAF=1.00;MQ=16.41;MQ0=73;MQRankSum=1.515;QD=3.45;ReadPosRankSum=4.761;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:53,127:180:41:654,41,0 chrIV 1308007 . C T 577 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.225;DP=172;DS;Dels=0.00;FS=14.836;HaplotypeScore=19.1011;MLEAC=2;MLEAF=1.00;MQ=16.57;MQ0=68;MQRankSum=0.453;QD=3.35;ReadPosRankSum=4.168;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:41,126:172:38:610,38,0 chrIV 1308014 . C T 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;DP=58;DS;Dels=0.00;FS=3.565;HaplotypeScore=10.5982;MLEAC=1;MLEAF=0.500;MQ=16.25;MQ0=29;MQRankSum=-0.188;QD=0.76;ReadPosRankSum=3.246;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:35,23:58:42:74,0,42 chrIV 1308016 . A G 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;DP=51;DS;Dels=0.00;FS=9.558;HaplotypeScore=6.1427;MLEAC=1;MLEAF=0.500;MQ=17.30;MQ0=26;MQRankSum=0.408;QD=0.73;ReadPosRankSum=4.215;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:38,13:51:61:67,0,61 chrIV 1308019 . T C 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;DP=46;DS;Dels=0.00;FS=11.747;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=16.26;MQ0=25;MQRankSum=1.267;QD=0.72;ReadPosRankSum=3.730;SB=-7.301e+01 GT:AD:DP:GQ:PL 0/1:33,13:46:63:63,0,64 chrIV 1308021 . C T 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.025;DP=50;DS;Dels=0.00;FS=7.346;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=15.60;MQ0=29;MQRankSum=0.604;QD=0.66;ReadPosRankSum=3.802;SB=-7.501e+01 GT:AD:DP:GQ:PL 0/1:37,13:50:63:63,0,65 chrIV 1308024 . A T 38.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;DP=51;Dels=0.00;FS=10.488;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=16.48;MQ0=28;MQRankSum=0.339;QD=0.75;ReadPosRankSum=4.031;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:39,12:51:68:68,0,90 chrIV 1308025 . A G 38.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;DP=52;Dels=0.00;FS=10.488;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=16.32;MQ0=29;MQRankSum=1.508;QD=0.73;ReadPosRankSum=3.908;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:40,12:52:68:68,0,92 chrIV 1308027 . G C 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.597;DP=57;Dels=0.00;FS=9.773;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=16.78;MQ0=31;MQRankSum=0.180;QD=0.65;ReadPosRankSum=3.626;SB=-7.301e+01 GT:AD:DP:GQ:PL 0/1:44,12:57:67:67,0,113 chrIV 1308030 . C T 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.762;DP=59;Dels=0.00;FS=6.029;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=16.62;MQ0=31;MQRankSum=0.998;QD=0.53;ReadPosRankSum=1.973;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:47,12:59:61:61,0,140 chrIV 1308031 . A G 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;DP=59;Dels=0.00;FS=9.037;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=16.62;MQ0=31;MQRankSum=-0.092;QD=0.46;ReadPosRankSum=0.553;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/1:46,13:59:57:57,0,155 chrIV 1308045 . G A 124.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;DP=94;Dels=0.00;FS=19.445;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=13.32;MQ0=55;MQRankSum=1.478;QD=1.32;ReadPosRankSum=-1.478;SB=-2.243e+01 GT:AD:DP:GQ:PL 0/1:39,49:94:7:154,0,7 chrIV 1308051 . T C 150.79 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.863;DP=235;Dels=0.00;FS=148.401;HaplotypeScore=10.0218;MLEAC=1;MLEAF=0.500;MQ=10.93;MQ0=140;MQRankSum=-0.011;QD=0.64;ReadPosRankSum=6.684;SB=-4.681e+01 GT:AD:DP:GQ:PL 0/1:107,128:235:4:180,0,4 chrIV 1308312 . A G 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.629;DP=1000;DS;Dels=0.00;FS=2.379;HaplotypeScore=3.4229;MLEAC=1;MLEAF=0.500;MQ=9.13;MQ0=733;MQRankSum=1.351;QD=0.04;ReadPosRankSum=2.577;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:907,89:1000:68:68,0,1498 chrIV 1308339 . A G 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;DP=1000;DS;Dels=0.00;FS=126.541;HaplotypeScore=3.3239;MLEAC=1;MLEAF=0.500;MQ=7.20;MQ0=771;MQRankSum=6.541;QD=0.02;ReadPosRankSum=-5.386;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:933,62:1000:51:51,0,804 chrIV 1308480 . A G 618.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.559;DP=957;Dels=0.00;FS=81.899;HaplotypeScore=20.2845;MLEAC=1;MLEAF=0.500;MQ=7.10;MQ0=853;MQRankSum=3.493;QD=0.65;ReadPosRankSum=-2.504;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:875,81:957:99:648,0,573 chrIV 1309620 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.3487;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.74;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3603,361,0 chrIV 1310395 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3256,339,0 chrIV 1312010 . A T 4118.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.098;DP=159;Dels=0.00;FS=5.781;HaplotypeScore=10.5497;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.623;QD=25.90;ReadPosRankSum=0.991;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4118,394,0 chrIV 1312365 . T C 5148.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=19.2515;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.63;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5148,523,0 chrIV 1312462 . A C 5448.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.6512;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.82;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5448,553,0 chrIV 1313544 . A T 2349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.890;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.162;QD=26.69;ReadPosRankSum=2.282;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:2,86:88:99:2382,231,0 chrIV 1316201 . C G 4043.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.96;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:4043,412,0 chrIV 1316641 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=3.667;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.425;QD=24.12;ReadPosRankSum=1.702;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2783,280,0 chrIV 1316659 . T C 2600 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=23.01;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2633,267,0 chrIV 1317903 . G C 5787.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.4885;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:5787,598,0 chrIV 1318030 . A C 4957.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4957,505,0 chrIV 1318086 . G T 4685.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.9457;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.46;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4685,463,0 chrIV 1318378 . G A 4962.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.12;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4962,493,0 chrIV 1318845 . T C 3810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=177;Dels=0.00;FS=5.156;HaplotypeScore=14.4590;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.028;QD=21.53;ReadPosRankSum=1.693;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3810,382,0 chrIV 1319997 . T A 5192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=194;Dels=0.00;FS=3.147;HaplotypeScore=11.7301;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.268;QD=26.76;ReadPosRankSum=1.714;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:5192,514,0 chrIV 1320900 . C T 2268 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.92;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,88:91:99:2301,222,0 chrIV 1321633 . A G 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.259;QD=23.71;ReadPosRankSum=1.707;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3295,340,0 chrIV 1323775 . C T 3921.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.76;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3921,391,0 chrIV 1324809 . C T 5001.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5001,502,0 chrIV 1327151 . C A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.4034;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.46;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3361,331,0 chrIV 1330607 . G T 3852.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.20;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3852,373,0 chrIV 1331502 . G A 6948.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=22.1498;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-3.564e+03 GT:AD:DP:GQ:PL 1/1:0,277:278:99:6948,700,0 chrIV 1332924 . G C 3726.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3726,385,0 chrIV 1333470 . C T 5761.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=16.0231;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.62;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5761,577,0 chrIV 1333527 . A G 6038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=231;Dels=0.00;FS=6.386;HaplotypeScore=11.0003;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.484;QD=26.14;ReadPosRankSum=2.407;SB=-3.209e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:6038,604,0 chrIV 1335357 . A G 5791.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.96;SB=-3.124e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5791,589,0 chrIV 1335398 . C A 5164.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.75;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5164,532,0 chrIV 1335638 . T A 7074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=22.4315;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.272;QD=25.26;ReadPosRankSum=1.720;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:1,279:280:99:7074,709,0 chrIV 1335901 . C T 4693.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.9932;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.77;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4693,466,0 chrIV 1337043 . T C 1597 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1630,165,0 chrIV 1337113 . T C 650 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:69:683,69,0 chrIV 1337684 . C G 6705.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=28.2899;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.53;SB=-3.467e+03 GT:AD:DP:GQ:PL 1/1:0,280:285:99:6705,709,0 chrIV 1337715 . T C 6230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=255;Dels=0.00;FS=5.644;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.161;QD=24.43;ReadPosRankSum=2.878;SB=-3.004e+03 GT:AD:DP:GQ:PL 1/1:3,252:255:99:6230,634,0 chrIV 1337840 . A G 7636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=318;Dels=0.00;FS=3.135;HaplotypeScore=17.4621;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.262;QD=24.01;ReadPosRankSum=1.699;SB=-4.306e+03 GT:AD:DP:GQ:PL 1/1:1,316:318:99:7636,763,0 chrIV 1338585 . A T 5108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=217;Dels=0.00;FS=3.587;HaplotypeScore=11.3443;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.094;QD=23.54;ReadPosRankSum=1.700;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:5108,523,0 chrIV 1340419 . T C 4393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=2.918;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.535;QD=26.95;ReadPosRankSum=2.419;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:4393,442,0 chrIV 1340783 . T C 24.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.399;DP=129;Dels=0.00;FS=4.946;HaplotypeScore=8.3437;MLEAC=1;MLEAF=0.500;MQ=53.25;MQ0=1;MQRankSum=1.417;QD=0.19;ReadPosRankSum=-4.427;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/1:120,9:129:30:54,0,30 chrIV 1341095 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=26.87;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3230,313,0 chrIV 1341293 . T C 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.192;QD=25.13;ReadPosRankSum=1.669;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2772,288,0 chrIV 1341693 . C T 2716 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.45;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2749,291,0 chrIV 1341826 . G C 4005.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.88;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4005,406,0 chrIV 1342134 . C T 3563.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3563,358,0 chrIV 1342306 . G T 4065.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.3620;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.77;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4065,409,0 chrIV 1342433 . G A 4929.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.5600;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.08;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4929,481,0 chrIV 1342986 . G A 5295.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.7520;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.96;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5295,535,0 chrIV 1343249 . G A 3447.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.72;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3447,340,0 chrIV 1344556 . C T 2276 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.6307;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.10;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2309,228,0 chrIV 1344681 . C T 3011 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.06;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3044,310,0 chrIV 1344727 . A G 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.648;DP=133;Dels=0.00;FS=12.371;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.632;QD=21.89;ReadPosRankSum=3.707;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:5,127:133:99:2945,300,0 chrIV 1345064 . A G 2657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.1500;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.858;QD=24.83;ReadPosRankSum=1.667;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2690,270,0 chrIV 1345487 . T A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.55;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3339,331,0 chrIV 1345630 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=19.57;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3105,316,0 chrIV 1345632 . T A 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.715;DP=159;Dels=0.00;FS=11.573;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;MQRankSum=-0.741;QD=19.21;ReadPosRankSum=2.804;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:3088,307,0 chrIV 1345654 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=17.86;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2801,274,0 chrIV 1345664 . G A 2469 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=17.15;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2502,255,0 chrIV 1346089 . A C 4380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=184;Dels=0.00;FS=2.819;HaplotypeScore=10.4108;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.248;QD=23.80;ReadPosRankSum=2.356;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:4380,448,0 chrIV 1346336 . G C 3601.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.85;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3601,370,0 chrIV 1346770 . C T 4689.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.68;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4689,457,0 chrIV 1347437 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.2500;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.79;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3105,327,0 chrIV 1348356 . T G 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.750;DP=111;Dels=0.00;FS=6.142;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.787;QD=23.35;ReadPosRankSum=2.917;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:3,106:111:99:2625,267,0 chrIV 1349687 . T C 4396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=182;Dels=0.00;FS=6.003;HaplotypeScore=9.4866;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;MQRankSum=-0.239;QD=24.15;ReadPosRankSum=2.961;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:3,178:182:99:4396,454,0 chrIV 1352461 . A C 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=106;Dels=0.00;FS=4.530;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=42.87;MQ0=1;MQRankSum=-1.006;QD=26.06;ReadPosRankSum=1.699;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2795,291,0 chrIV 1353152 . A G 2004 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=25.69;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2037,204,0 chrIV 1353994 . T C 3129 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=15.8867;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.70;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3162,324,0 chrIV 1354278 . G C 3806.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.62;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3806,388,0 chrIV 1354322 . T A 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.464;QD=25.03;ReadPosRankSum=1.708;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3554,367,0 chrIV 1354912 . C G 3304.01 filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=7;QD=24.84;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:7,125:133:99:3304,334,0 chrIV 1355429 . A C 1665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.644;QD=21.08;ReadPosRankSum=1.688;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1698,171,0 chrIV 1357207 . A G 4353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.283;DP=184;Dels=0.00;FS=4.898;HaplotypeScore=13.4618;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.766;QD=23.66;ReadPosRankSum=3.805;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:5,179:184:99:4353,436,0 chrIV 1359608 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.16;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3349,346,0 chrIV 1361031 . A G 1983 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.80;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2016,198,0 chrIV 1361345 . T G 178.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.307;DP=157;Dels=0.00;FS=190.450;HaplotypeScore=21.9577;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=-1.340;QD=1.13;ReadPosRankSum=-4.758;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,49:157:99:208,0,2282 chrIV 1362063 . T A 4783.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.8309;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.44;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4783,472,0 chrIV 1362283 . C A 2999 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.38;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3032,298,0 chrIV 1364465 . C T 3804.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.03;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3804,376,0 chrIV 1364702 . G A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.24;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3347,334,0 chrIV 1364750 . A G 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.223;QD=25.39;ReadPosRankSum=1.681;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3479,352,0 chrIV 1364933 . C G 2310 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.21;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,99:104:99:2343,240,0 chrIV 1365520 . C T 4192.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.10;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4192,430,0 chrIV 1366750 . G A 2784 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.9126;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.75;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2817,280,0 chrIV 1367576 . T C 5008.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.3639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5008,517,0 chrIV 1368022 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.48;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3364,331,0 chrIV 1368624 . T C 4686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=186;Dels=0.00;FS=2.955;HaplotypeScore=13.0229;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.414;QD=25.19;ReadPosRankSum=2.410;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4686,481,0 chrIV 1371004 . T C 4493.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.02;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,198:204:99:4493,460,0 chrIV 1371121 . C T 3001 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.59;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3034,301,0 chrIV 1371136 . C T 2948 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.76;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2981,295,0 chrIV 1371632 . T C 4165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.404;QD=28.14;ReadPosRankSum=1.709;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:4165,418,0 chrIV 1371862 . A G 4661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=184;Dels=0.00;FS=5.293;HaplotypeScore=16.0453;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.852;QD=25.33;ReadPosRankSum=2.863;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:4661,466,0 chrIV 1372366 . C T 3747.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.66;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3747,370,0 chrIV 1372422 . G A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3255,322,0 chrIV 1372812 . C T 2394 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2427,243,0 chrIV 1373275 . C T 4873.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.6963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.06;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4873,478,0 chrIV 1373320 . C T 4206.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4206,433,0 chrIV 1373769 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2141,213,0 chrIV 1374217 . G T 4866.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.88;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4866,487,0 chrIV 1374352 . T C 4735.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.5903;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=27.53;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4735,484,0 chrIV 1374505 . T G 3752.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5468;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3752,376,0 chrIV 1374590 . A G 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=173;Dels=0.00;FS=2.930;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.433;QD=18.05;ReadPosRankSum=2.421;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3156,330,0 chrIV 1374919 . C T 3607.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.12;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3607,364,0 chrIV 1375261 . C T 4346.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4346,448,0 chrIV 1377935 . G A 3175 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=25.60;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3208,328,0 chrIV 1379791 . A C 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.080;QD=20.93;ReadPosRankSum=2.407;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2440,249,0 chrIV 1379888 . C T 1972 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.95;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:2005,204,0 chrIV 1380625 . A G 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=137;Dels=0.00;FS=9.169;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.350;QD=25.09;ReadPosRankSum=2.378;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3438,352,0 chrIV 1382259 . T G 2257 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2290,237,0 chrIV 1386337 . T A 4883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=207;Dels=0.00;FS=4.075;HaplotypeScore=17.3944;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.678;QD=23.59;ReadPosRankSum=1.615;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4883,496,0 chrIV 1386851 . T C 4876.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.2486;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.13;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4876,505,0 chrIV 1386920 . G A 4935.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.68;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4935,487,0 chrIV 1386994 . A G 4372.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.8801;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.29;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4372,445,0 chrIV 1387160 . G A 3946.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.36;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3946,412,0 chrIV 1389010 . T A 4232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.572;DP=167;Dels=0.00;FS=2.579;HaplotypeScore=15.2192;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.114;QD=25.34;ReadPosRankSum=2.621;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:4232,398,0 chrIV 1390373 . A G 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=3.104;HaplotypeScore=11.2339;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.283;QD=24.62;ReadPosRankSum=1.708;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3472,346,0 chrIV 1390794 . T A 2937 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.27;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2970,298,0 chrIV 1391355 . T C 4281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.7670;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.330;QD=25.33;ReadPosRankSum=1.711;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:4281,430,0 chrIV 1391478 . G A 5052.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.2881;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.18;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:5052,496,0 chrIV 1391636 . A G 5347.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=18.4122;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.09;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5347,544,0 chrIV 1392190 . G A 2173 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2206,225,0 chrIV 1394087 . C T 4143.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.36;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4143,409,0 chrIV 1394427 . T C 4314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=185;Dels=0.00;FS=8.290;HaplotypeScore=17.0418;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.305;QD=23.32;ReadPosRankSum=2.300;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:2,179:185:99:4314,436,0 chrIV 1396254 . T C 5812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=227;Dels=0.00;FS=5.755;HaplotypeScore=17.6796;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.133;QD=25.60;ReadPosRankSum=2.969;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:3,223:227:99:5812,595,0 chrIV 1397565 . A G 4419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=192;Dels=0.00;FS=8.200;HaplotypeScore=8.2944;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.518;QD=23.02;ReadPosRankSum=2.334;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4419,460,0 chrIV 1398006 . G A 4038.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.05;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:4038,403,0 chrIV 1398909 . C T 4723.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.7464;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=25.53;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4723,475,0 chrIV 1400042 . G A 4032.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.9213;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:4032,406,0 chrIV 1400971 . C T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3654;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.58;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3457,349,0 chrIV 1400974 . C G 3108 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.0993;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.61;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3141,322,0 chrIV 1401563 . T C 3567.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.8087;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.12;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3567,364,0 chrIV 1401685 . A G 4068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=165;Dels=0.00;FS=2.576;HaplotypeScore=18.2026;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.025;QD=24.65;ReadPosRankSum=2.919;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:3,160:165:99:4068,406,0 chrIV 1401828 . C A 3626.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3626,376,0 chrIV 1402305 . C T 3934.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.4041;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.74;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3934,403,0 chrIV 1402695 . T C 1945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=82;Dels=0.00;FS=3.059;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-1.476;QD=23.72;ReadPosRankSum=2.298;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:2,79:82:99:1978,198,0 chrIV 1402760 . A G 1620 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.25;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1653,168,0 chrIV 1402770 . C G 1694 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5895;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.70;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1727,174,0 chrIV 1403147 . T G 2594 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2627,270,0 chrIV 1403491 . C T 4351.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.2595;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.59;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4351,439,0 chrIV 1403689 . A G 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=150;Dels=0.00;FS=7.517;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.107;QD=24.67;ReadPosRankSum=2.318;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3701,376,0 chrIV 1403771 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.18;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3530,355,0 chrIV 1403792 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.94;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3221,319,0 chrIV 1404745 . G A 2866 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2899,289,0 chrIV 1405366 . A G 5838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=24.3805;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.223;QD=21.15;ReadPosRankSum=2.432;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:2,272:276:99:5838,604,0 chrIV 1406350 . T C 3770.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=25.30;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3770,388,0 chrIV 1406418 . A C 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.085;DP=163;Dels=0.00;FS=6.675;HaplotypeScore=15.9546;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.723;QD=24.58;ReadPosRankSum=1.739;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:2,158:163:99:4007,412,0 chrIV 1406566 . A G 2906 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.37;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2939,306,0 chrIV 1406578 . T C 3279.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=22.77;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3279,331,0 chrIV 1406795 . T A 4674.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.1402;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.22;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4674,487,0 chrIV 1406925 . C T 5110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.5463;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.935;QD=25.55;ReadPosRankSum=-1.264;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:5110,511,0 chrIV 1407020 . A T 4269.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.3030;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.98;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4269,418,0 chrIV 1407176 . G A 4506.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4272;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.98;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4506,454,0 chrIV 1407493 . C T 3604.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3604,370,0 chrIV 1407535 . A G 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.558;QD=22.11;ReadPosRankSum=1.675;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2708,273,0 chrIV 1407845 . C T 5428.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=16.5583;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.23;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5428,547,0 chrIV 1407899 . C T 7283.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=16.6558;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.44;SB=-4.307e+03 GT:AD:DP:GQ:PL 1/1:0,297:298:99:7283,721,0 chrIV 1408247 . C T 4683.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=18.7095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4683,481,0 chrIV 1408429 . G A 5393.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.74;SB=-3.168e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5393,529,0 chrIV 1408589 . C T 4126.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.16;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4126,412,0 chrIV 1408596 . C T 3934.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.98;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3934,385,0 chrIV 1408988 . T C 5166.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=20.2424;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.20;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:5166,517,0 chrIV 1409126 . A T 7286.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-4.318e+03 GT:AD:DP:GQ:PL 1/1:0,304:304:99:7286,718,0 chrIV 1409468 . T C 3372.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.21;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3372,340,0 chrIV 1409487 . T C 3770.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.18;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3770,391,0 chrIV 1409794 . A G 5596.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.44;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5596,565,0 chrIV 1409847 . C T 5954.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=18.2351;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=24.91;SB=-2.922e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5954,583,0 chrIV 1410118 . C T 3119 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.12;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3152,310,0 chrIV 1410128 . T C 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=6.264;HaplotypeScore=120.4029;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-1.081;QD=21.06;ReadPosRankSum=1.669;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3496,361,0 chrIV 1410837 . C T 10961.01 filter AC=2;AF=1.00;AN=2;DP=488;Dels=0.00;FS=0.000;HaplotypeScore=55.7896;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.46;SB=-6.057e+03 GT:AD:DP:GQ:PL 1/1:0,483:488:99:10961,1100,0 chrIV 1411151 . C T 8068.01 PASS AC=2;AF=1.00;AN=2;DP=352;Dels=0.00;FS=0.000;HaplotypeScore=21.1934;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.92;SB=-3.157e+03 GT:AD:DP:GQ:PL 1/1:0,350:352:99:8068,791,0 chrIV 1411239 . G A 6282.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=14.3662;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.53;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6282,619,0 chrIV 1411263 . A G 5228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.697;DP=239;Dels=0.00;FS=11.950;HaplotypeScore=16.7269;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-1.245;QD=21.87;ReadPosRankSum=3.769;SB=-3.046e+03 GT:AD:DP:GQ:PL 1/1:5,234:239:99:5228,547,0 chrIV 1411324 . G A 4112.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.77;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4112,409,0 chrIV 1411563 . C T 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=136;Dels=0.00;FS=4.175;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;MQRankSum=0.306;QD=22.12;ReadPosRankSum=-0.993;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3041,276,0 chrIV 1411566 . T C 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=4.093;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=0.357;QD=21.82;ReadPosRankSum=1.681;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3000,306,0 chrIV 1411608 . T C 2978 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.74;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3011,309,0 chrIV 1411676 . C T 2774 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=36.33;MQ0=0;QD=16.61;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2807,283,0 chrIV 1411690 . A T 2531 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.72;MQ0=0;QD=15.16;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2564,255,0 chrIV 1411698 . T C 2352 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=184;Dels=0.00;FS=5.253;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;MQRankSum=-1.074;QD=12.78;ReadPosRankSum=3.412;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:4,180:184:99:2385,243,0 chrIV 1411705 . C T 1734 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=180;Dels=0.00;FS=9.304;HaplotypeScore=5.1398;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;MQRankSum=-0.061;QD=9.63;ReadPosRankSum=2.340;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:1767,218,0 chrIV 1411706 . A C 1729 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=179;Dels=0.00;FS=9.115;HaplotypeScore=5.1398;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=0;MQRankSum=1.956;QD=9.66;ReadPosRankSum=2.395;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:1762,218,0 chrIV 1411721 . C T 2131 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.25;MQ0=0;QD=11.64;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:2164,216,0 chrIV 1411737 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=35.80;MQ0=0;QD=11.11;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:1910,192,0 chrIV 1412047 . A G 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.035;DP=145;Dels=0.00;FS=5.567;HaplotypeScore=14.1479;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.371;QD=22.57;ReadPosRankSum=1.706;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3273,342,0 chrIV 1412456 . C T 830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=86;Dels=0.00;FS=2.302;HaplotypeScore=98.8557;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;MQRankSum=0.093;QD=9.65;ReadPosRankSum=3.185;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:4,81:86:87:863,87,0 chrIV 1412726 . G T 3790.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=26.32;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3790,373,0 chrIV 1412849 . G A 3163 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.36;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:3196,313,0 chrIV 1412922 . C T 3873.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=25.99;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3873,376,0 chrIV 1412942 . T C 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.0046;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.866;QD=22.34;ReadPosRankSum=1.688;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3530,372,0 chrIV 1413176 . T G 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=3.474;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-1.118;QD=21.89;ReadPosRankSum=1.710;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3480,361,0 chrIV 1413182 . C G 3723.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=22.98;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3723,382,0 chrIV 1413299 . C T 6821.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=13.0886;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=27.28;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:6821,670,0 chrIV 1413377 . T C 5089.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=25.45;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5089,523,0 chrIV 1413485 . A G 7120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=11.7952;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.391;QD=25.99;ReadPosRankSum=1.719;SB=-3.844e+03 GT:AD:DP:GQ:PL 1/1:1,273:274:99:7120,712,0 chrIV 1413914 . T C 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=157;Dels=0.00;FS=7.973;HaplotypeScore=11.3303;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.448;QD=23.54;ReadPosRankSum=2.387;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3695,373,0 chrIV 1414327 . A T 3044 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3077,307,0 chrIV 1414748 . G A 3370.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.40;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3370,337,0 chrIV 1414935 . T C 4327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4726;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.893;QD=26.88;ReadPosRankSum=1.711;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:4327,439,0 chrIV 1415193 . A T 4863.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.2233;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.73;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4863,493,0 chrIV 1416353 . A G 3610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.407;QD=24.07;ReadPosRankSum=1.686;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3610,367,0 chrIV 1416401 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.32;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3064,315,0 chrIV 1416431 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=25.15;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:3126,307,0 chrIV 1416716 . T C 5311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=221;Dels=0.00;FS=4.059;HaplotypeScore=10.4615;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.356;QD=24.03;ReadPosRankSum=1.716;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:1,218:221:99:5311,556,0 chrIV 1416927 . A G 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=167;Dels=0.00;FS=2.578;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.287;QD=24.32;ReadPosRankSum=2.958;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:3,162:167:99:4062,421,0 chrIV 1416976 . G A 3505.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.68;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3505,363,0 chrIV 1417161 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.50;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3430,355,0 chrIV 1417489 . C T 3975.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=25.65;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3975,388,0 chrIV 1417509 . T C 3410.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0570;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.14;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3410,360,0 chrIV 1417646 . C T 3466.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.87;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3466,340,0 chrIV 1417872 . G A 4800.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.74;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4800,502,0 chrIV 1422605 . A G 1902 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.42;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1935,204,0 chrIV 1426136 . A G 4096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=178;Dels=0.00;FS=2.968;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.484;QD=23.01;ReadPosRankSum=2.339;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4096,415,0 chrIV 1429122 . T C 4274.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.0269;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.61;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4274,442,0 chrIV 1429245 . A G 6844.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=12.1637;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.44;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:6844,718,0 chrIV 1429971 . C G 7562.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=30.2110;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.44;SB=-3.778e+03 GT:AD:DP:GQ:PL 1/1:0,332:337:99:7562,790,0 chrIV 1431080 . G C 4480.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.6013;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.83;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4480,460,0 chrIV 1433591 . T C 4644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=190;Dels=0.00;FS=6.424;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.529;QD=24.44;ReadPosRankSum=2.345;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:2,186:190:99:4644,478,0 chrIV 1433710 . A T 4883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.155;QD=24.66;ReadPosRankSum=1.680;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4883,481,0 chrIV 1434754 . C G 4918.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.8997;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.61;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,188:192:99:4918,508,0 chrIV 1438202 . C A 2654 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2687,270,0 chrIV 1441482 . G A 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.802;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.219;QD=23.92;ReadPosRankSum=1.155;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2640,258,0 chrIV 1441483 . T C 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.732;QD=23.31;ReadPosRankSum=1.700;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2574,264,0 chrIV 1441760 . A G 3658.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.23;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3658,373,0 chrIV 1441950 . C T 3729.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3729,367,0 chrIV 1442081 . G A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.1328;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.57;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3489,355,0 chrIV 1442375 . A G 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=156;Dels=0.00;FS=2.844;HaplotypeScore=5.1145;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.388;QD=23.66;ReadPosRankSum=2.402;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3691,379,0 chrIV 1442387 . G A 3091 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.89;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3124,313,0 chrIV 1442606 . A G 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=157;Dels=0.00;FS=13.485;HaplotypeScore=14.3476;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.822;QD=24.25;ReadPosRankSum=2.902;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:3,150:157:99:3807,385,0 chrIV 1442669 . A G 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=5.426;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.569;QD=25.08;ReadPosRankSum=1.708;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3587,381,0 chrIV 1442725 . T C 3887.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.09;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3887,394,0 chrIV 1442774 . C T 4312.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4312,445,0 chrIV 1442806 . G A 4295.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.03;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4295,421,0 chrIV 1442843 . T C 4955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=3.235;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=1.452;QD=25.03;ReadPosRankSum=1.697;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4955,499,0 chrIV 1443122 . G A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=21.98;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3737,385,0 chrIV 1443134 . T C 3505.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=21.11;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3505,361,0 chrIV 1443138 . T C 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;MQRankSum=-0.297;QD=20.43;ReadPosRankSum=1.650;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3453,355,0 chrIV 1443154 . C T 3116 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.5131;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=18.88;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3149,333,0 chrIV 1443293 . T A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=26.55;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3638,364,0 chrIV 1443444 . T G 1507 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=21.84;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1540,159,0 chrIV 1443509 . A G 968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;MQRankSum=-1.770;QD=14.03;ReadPosRankSum=2.379;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1001,105,0 chrIV 1443515 . A T 940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-0.396;QD=13.43;ReadPosRankSum=1.683;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:973,99,0 chrIV 1443535 . G A 920 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=14.2214;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=12.78;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:953,99,0 chrIV 1443536 . G A 870 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=14.2214;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=12.08;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:90:903,90,0 chrIV 1443800 . T C 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.043;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.4038;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.750;QD=25.25;ReadPosRankSum=2.359;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2785,279,0 chrIV 1443836 . A G 3691.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=26.36;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3691,379,0 chrIV 1443906 . C A 5201.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=23.86;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5201,520,0 chrIV 1443911 . C T 5193.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=8.2614;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.38;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5193,529,0 chrIV 1444256 . C T 4571.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.68;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4571,472,0 chrIV 1444337 . G A 3208 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.82;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3241,342,0 chrIV 1444364 . A G 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=142;Dels=0.00;FS=6.368;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.863;QD=24.40;ReadPosRankSum=2.415;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3465,346,0 chrIV 1444544 . C T 4788.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.59;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4788,493,0 chrIV 1444709 . T C 5502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=262;Dels=0.00;FS=2.914;HaplotypeScore=6.1300;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-1.911;QD=21.00;ReadPosRankSum=2.298;SB=-3.055e+03 GT:AD:DP:GQ:PL 1/1:2,258:262:99:5502,571,0 chrIV 1444711 . G A 5958.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=2.8153;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.92;SB=-3.237e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5958,583,0 chrIV 1444847 . A G 4655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=251;Dels=0.00;FS=2.907;HaplotypeScore=12.8978;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.969;QD=18.55;ReadPosRankSum=2.399;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:2,244:251:99:4655,495,0 chrIV 1444985 . A T 6615.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.68;SB=-3.761e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6615,652,0 chrIV 1445015 . G A 6145.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=14.1014;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.82;SB=-3.069e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:6145,631,0 chrIV 1445114 . C T 4953.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=6.3930;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.35;SB=-2.743e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:4953,502,0 chrIV 1445129 . C T 5706.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=17.4737;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.61;SB=-3.199e+03 GT:AD:DP:GQ:PL 1/1:0,262:264:99:5706,580,0 chrIV 1445249 . C T 7361.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=17.4467;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.06;SB=-3.857e+03 GT:AD:DP:GQ:PL 1/1:0,305:306:99:7361,739,0 chrIV 1445459 . T A 5761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=251;Dels=0.00;FS=9.969;HaplotypeScore=18.2528;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.592;QD=22.95;ReadPosRankSum=2.391;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:2,249:251:99:5761,574,0 chrIV 1445641 . T C 3874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.163;DP=179;Dels=0.00;FS=9.173;HaplotypeScore=11.3676;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.291;QD=21.64;ReadPosRankSum=2.591;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:4,174:179:99:3874,405,0 chrIV 1445712 . C T 4978.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.93;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4978,517,0 chrIV 1445739 . T C 4760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=3.958;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.104;QD=23.33;ReadPosRankSum=1.715;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4760,487,0 chrIV 1445894 . C T 6957.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.67;SB=-3.228e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:6957,682,0 chrIV 1446020 . T C 4453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=191;Dels=0.00;FS=8.634;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.817;QD=23.31;ReadPosRankSum=2.411;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4453,466,0 chrIV 1446136 . C T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.4717;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.98;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4461,451,0 chrIV 1446425 . G A 4145.01 SnpCluster AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=22.53;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4145,430,0 chrIV 1446428 . C T 4327.01 SnpCluster AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=23.91;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4327,427,0 chrIV 1446434 . G A 4335.01 SnpCluster AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=24.35;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4335,421,0 chrIV 1446482 . G A 2608 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.32;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2641,264,0 chrIV 1446792 . C T 3068 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.16;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3101,301,0 chrIV 1446878 . A G 3809.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.6911;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.51;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3809,394,0 chrIV 1446950 . T C 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.705;QD=24.05;ReadPosRankSum=1.705;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,128:132:99:3207,330,0 chrIV 1447014 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=26.54;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3609,352,0 chrIV 1447053 . G A 2764 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.26;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2797,285,0 chrIV 1447054 . T C 2833 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.96;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2866,283,0 chrIV 1447111 . T C 2948 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.21;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2981,303,0 chrIV 1447149 . C T 3733.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.4095;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=24.56;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3733,382,0 chrIV 1447231 . G A 3655.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.3574;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=24.53;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3655,364,0 chrIV 1447296 . A G 2427 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.45;MQ0=0;QD=20.74;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2460,273,0 chrIV 1447297 . T A 2489 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=0;QD=21.46;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2522,276,0 chrIV 1447313 . C T 3011 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;QD=23.16;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3044,306,0 chrIV 1447378 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=107.5609;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=23.73;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3070,298,0 chrIV 1447428 . G C 1837 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;QD=17.17;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1870,186,0 chrIV 1447449 . T G 1410 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=37.6938;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=0;QD=16.21;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1443,147,0 chrIV 1447558 . C A 2455 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.2611;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=21.16;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2488,249,0 chrIV 1447568 . G C 2453 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.7697;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=21.33;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2486,264,0 chrIV 1447682 . G A 1815 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.87;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1848,204,0 chrIV 1447808 . C A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.3206;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=24.89;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3659,382,0 chrIV 1447837 . G A 3813.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.3708;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=25.42;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3813,388,0 chrIV 1447962 . A G 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=145;Dels=0.00;FS=9.594;HaplotypeScore=7.2240;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.528;QD=23.28;ReadPosRankSum=2.951;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:3,140:145:99:3375,346,0 chrIV 1447991 . C T 3632.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.0004;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.28;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,158:163:99:3632,370,0 chrIV 1448237 . G A 2906 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=25.05;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2939,298,0 chrIV 1448315 . G A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.7692;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.47;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3597,352,0 chrIV 1448483 . T A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=26.95;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3423,346,0 chrIV 1448600 . A G 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=4.634;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.928;QD=25.31;ReadPosRankSum=1.704;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3248,334,0 chrIV 1448696 . A T 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=3.650;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-1.424;QD=24.94;ReadPosRankSum=1.661;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3641,370,0 chrIV 1448726 . C G 3153 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=20.61;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3186,325,0 chrIV 1448735 . G A 3270.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=20.96;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3270,339,0 chrIV 1448745 . A G 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=3.441;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=-1.035;QD=20.06;ReadPosRankSum=1.710;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3223,331,0 chrIV 1448987 . T A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=24.81;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3721,373,0 chrIV 1449089 . T C 2594 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2627,270,0 chrIV 1449123 . A G 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.439;QD=23.32;ReadPosRankSum=1.679;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3065,304,0 chrIV 1449406 . G A 2865 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.58;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2898,283,0 chrIV 1449611 . G A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.07;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3911,414,0 chrIV 1450091 . G A 1538 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1571,156,0 chrIV 1450513 . T A 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=106;Dels=0.00;FS=7.696;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.453;QD=21.15;ReadPosRankSum=2.218;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2275,222,0 chrIV 1450588 . C A 2190 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.86;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2223,240,0 chrIV 1450638 . G A 2901 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1709;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=23.02;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2934,295,0 chrIV 1450681 . T A 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=110;Dels=0.00;FS=3.044;HaplotypeScore=79.4605;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=1.421;QD=22.05;ReadPosRankSum=2.338;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2459,243,0 chrIV 1450720 . G A 2530 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.02;FS=0.000;HaplotypeScore=20.1519;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=22.39;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2563,258,0 chrIV 1450764 . A G 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=141;Dels=0.00;FS=8.888;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=-0.096;QD=24.60;ReadPosRankSum=2.415;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3469,357,0 chrIV 1450894 . C T 2213 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=21.49;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2246,228,0 chrIV 1450897 . A G 2278 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=21.49;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2311,243,0 chrIV 1450914 . T C 1950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.096;HaplotypeScore=4.3408;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;MQRankSum=-1.291;QD=18.93;ReadPosRankSum=1.630;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1983,210,0 chrIV 1450998 . G A 1915 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=16.65;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1948,189,0 chrIV 1451009 . A T 1830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;MQRankSum=0.429;QD=15.64;ReadPosRankSum=1.703;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1863,189,0 chrIV 1451028 . G A 1640 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.6820;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=14.14;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1673,174,0 chrIV 1451042 . C G 1143 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=12.16;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1176,120,0 chrIV 1451054 . C T 1232 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;QD=14.16;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1265,123,0 chrIV 1451129 . A T 26.77 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=46.6263;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;MQRankSum=-1.176;QD=0.48;ReadPosRankSum=1.670;SB=-6.348e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:6:58,6,0 chrIV 1451166 . A G 1386 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=18.24;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1419,147,0 chrIV 1451277 . C T 1538 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.51;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1571,159,0 chrIV 1451427 . G A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.7573;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.73;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3577,352,0 chrIV 1451517 . C T 5716.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=25.18;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5716,577,0 chrIV 1451576 . C G 3855.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.1624;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=19.18;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:3855,388,0 chrIV 1451577 . C T 3995.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.3737;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.08;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:3995,391,0 chrIV 1451724 . G A 4490.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.63;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4490,448,0 chrIV 1451955 . G A 3601.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=25.54;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3601,367,0 chrIV 1452195 . A G 3018 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=24.54;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3051,318,0 chrIV 1452222 . A G 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.172;QD=23.50;ReadPosRankSum=1.706;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:3158,327,0 chrIV 1452255 . C T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=25.97;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3688,364,0 chrIV 1452420 . G C 3582.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.5105;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=24.53;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3582,367,0 chrIV 1452434 . A T 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4869;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.753;QD=26.44;ReadPosRankSum=1.707;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3649,352,0 chrIV 1452539 . T G 3590.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.5028;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=25.28;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3590,369,0 chrIV 1452589 . G A 4252.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.8018;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=24.87;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4252,448,0 chrIV 1452642 . G C 5001.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=16.7694;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=24.51;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,199:204:99:5001,508,0 chrIV 1452762 . G A 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.569;DP=192;Dels=0.00;FS=3.366;HaplotypeScore=20.1160;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.245;QD=21.74;ReadPosRankSum=1.460;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4175,391,0 chrIV 1452807 . C A 4318.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.9181;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.70;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4318,418,0 chrIV 1452825 . A G 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=165;Dels=0.00;FS=2.570;HaplotypeScore=3.3969;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=0.299;QD=18.14;ReadPosRankSum=2.921;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3026,312,0 chrIV 1452837 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=4.593;HaplotypeScore=4.6788;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-0.819;QD=19.62;ReadPosRankSum=1.711;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3276,339,0 chrIV 1453212 . T G 1360 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1393,141,0 chrIV 1453300 . G A 1068 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.25;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1101,114,0 chrIV 1454822 . G A 4300.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4300,442,0 chrIV 1454951 . A G 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=4.771;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.014;QD=25.37;ReadPosRankSum=1.629;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3425,346,0 chrIV 1455133 . A G 4450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=173;Dels=0.00;FS=3.217;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.067;QD=25.72;ReadPosRankSum=1.712;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4450,445,0 chrIV 1455507 . A G 5025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=200;Dels=0.00;FS=3.672;HaplotypeScore=13.0509;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-1.190;QD=25.13;ReadPosRankSum=1.715;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:5025,508,0 chrIV 1455570 . T C 5157.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.18;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:5157,520,0 chrIV 1455713 . G A 4701.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=22.49;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4701,466,0 chrIV 1455714 . G A 4761.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=22.89;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4761,466,0 chrIV 1455920 . C G 4122.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=23.42;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4122,424,0 chrIV 1455937 . C T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.38;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3507,372,0 chrIV 1456074 . T G 2464 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.40;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2497,252,0 chrIV 1456144 . A G 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.702;DP=75;Dels=0.00;FS=4.894;HaplotypeScore=6.6387;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.819;QD=20.97;ReadPosRankSum=3.702;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:5,68:75:99:1606,162,0 chrIV 1456284 . G C 1469 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1502,156,0 chrIV 1456713 . A G 2086 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2119,213,0 chrIV 1456746 . G A 2177 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=25.31;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2210,228,0 chrIV 1456794 . C G 2563 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=24.41;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2596,267,0 chrIV 1456812 . C A 2624 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=23.64;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2657,259,0 chrIV 1457142 . T C 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.341;QD=24.95;ReadPosRankSum=1.706;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3343,348,0 chrIV 1457335 . T C 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=8.048;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.070;QD=24.90;ReadPosRankSum=2.390;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:3096,310,0 chrIV 1457379 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.70;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3598,355,0 chrIV 1457633 . C A 2686 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.10;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2719,273,0 chrIV 1457664 . G A 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.827;QD=24.84;ReadPosRankSum=-0.827;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3329,328,0 chrIV 1457763 . C T 2879 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2912,297,0 chrIV 1457829 . G A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.41;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3659,370,0 chrIV 1457981 . C T 5723.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=17.1328;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=26.13;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5723,562,0 chrIV 1458101 . C T 7277.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=10.9440;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=26.18;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,277:278:99:7277,733,0 chrIV 1458188 . G A 3166 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;QD=9.80;SB=-3.552e+03 GT:AD:DP:GQ:PL 1/1:0,322:323:99:3199,325,0 chrIV 1458243 . T C 6599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=322;Dels=0.00;FS=14.688;HaplotypeScore=17.7029;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.091;QD=20.49;ReadPosRankSum=2.972;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:3,316:322:99:6599,700,0 chrIV 1458332 . C T 6919.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=7.8794;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=21.97;SB=-3.308e+03 GT:AD:DP:GQ:PL 1/1:0,315:315:99:6919,718,0 chrIV 1458347 . C T 6877.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=6.5546;MLEAC=2;MLEAF=1.00;MQ=43.05;MQ0=0;QD=22.33;SB=-3.198e+03 GT:AD:DP:GQ:PL 1/1:0,305:308:99:6877,691,0 chrIV 1458387 . G A 5998.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=14.4931;MLEAC=2;MLEAF=1.00;MQ=43.64;MQ0=0;QD=22.72;SB=-3.245e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:5998,619,0 chrIV 1458423 . T C 4595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=202;Dels=0.00;FS=3.144;HaplotypeScore=17.6063;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=-1.662;QD=22.75;ReadPosRankSum=1.715;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:1,197:202:99:4595,466,0 chrIV 1458432 . T C 4313.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.8333;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=23.19;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4313,439,0 chrIV 1458576 . G A 5074.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.0247;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=24.75;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:5074,517,0 chrIV 1458625 . C T 4568.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=24.69;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4568,451,0 chrIV 1458636 . G T 4032.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=22.53;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4032,409,0 chrIV 1458898 . C T 3643.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=21.95;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3643,364,0 chrIV 1458903 . C T 3510.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=20.77;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3510,349,0 chrIV 1458915 . C T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.53;MQ0=0;QD=20.65;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3448,343,0 chrIV 1458931 . T C 3129 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;QD=18.62;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3162,322,0 chrIV 1458951 . C T 2833 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.1560;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=16.66;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2866,288,0 chrIV 1459011 . C T 4303.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0570;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.91;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4303,427,0 chrIV 1459382 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.87;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3700,379,0 chrIV 1459584 . G A 4336.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=25.06;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4336,427,0 chrIV 1459601 . C G 4095.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=13.3169;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=21.44;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4095,412,0 chrIV 1459669 . C G 5558.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.02;FS=0.000;HaplotypeScore=23.3571;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=21.63;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:0,249:252:99:5558,577,0 chrIV 1459800 . C T 5515.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=26.01;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5515,544,0 chrIV 1459840 . G A 5881.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=12.6386;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=25.35;SB=-3.069e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5881,571,0 chrIV 1460367 . G A 4429.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.0638;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=22.26;SB=-2.850e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4429,445,0 chrIV 1460373 . T C 4126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=186;Dels=0.00;FS=6.187;HaplotypeScore=5.0805;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=-1.135;QD=22.18;ReadPosRankSum=2.396;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4126,433,0 chrIV 1460401 . T C 4354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.345;DP=197;Dels=0.00;FS=12.630;HaplotypeScore=11.0953;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.066;QD=22.10;ReadPosRankSum=3.345;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:4,193:197:99:4354,439,0 chrIV 1460431 . T A 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=3.010;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-1.195;QD=22.58;ReadPosRankSum=1.692;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3929,388,0 chrIV 1460433 . G A 3876.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=22.40;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3876,388,0 chrIV 1460475 . G C 3779.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.5593;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.89;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,183:190:99:3779,399,0 chrIV 1460534 . A G 3876.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=19.9274;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.40;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3876,403,0 chrIV 1460585 . T C 3699.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=22.98;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3699,387,0 chrIV 1460694 . A G 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=170;Dels=0.00;FS=9.997;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=-0.363;QD=22.88;ReadPosRankSum=2.923;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:3889,394,0 chrIV 1460721 . A G 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=152;Dels=0.00;FS=6.965;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=1.408;QD=20.57;ReadPosRankSum=2.417;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3160,324,0 chrIV 1460763 . A T 2551 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=18.90;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2584,261,0 chrIV 1460774 . C T 2465 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=19.41;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2498,249,0 chrIV 1460798 . T C 2371 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=18.24;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2404,240,0 chrIV 1460813 . A G 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.538;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;MQRankSum=-1.071;QD=15.95;ReadPosRankSum=1.573;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2155,219,0 chrIV 1460832 . T C 2349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=137;Dels=0.00;FS=2.948;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;MQRankSum=-0.714;QD=17.15;ReadPosRankSum=2.377;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2382,240,0 chrIV 1460859 . G A 3074 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=19.21;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3107,313,0 chrIV 1460877 . G A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=20.08;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3354,343,0 chrIV 1460907 . A G 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=177;Dels=0.00;FS=9.180;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;MQRankSum=-1.699;QD=19.04;ReadPosRankSum=2.881;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:3370,357,0 chrIV 1460919 . C T 2967 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=16.95;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3000,315,0 chrIV 1460932 . C T 2871 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=17.51;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2904,291,0 chrIV 1460968 . T C 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=173;Dels=0.00;FS=5.803;HaplotypeScore=11.0233;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.304;QD=20.10;ReadPosRankSum=2.924;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:3477,355,0 chrIV 1461071 . C T 5358.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=24.14;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5358,526,0 chrIV 1461391 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=25.05;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3282,319,0 chrIV 1461432 . G A 3595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.775;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.6638;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.390;QD=23.65;ReadPosRankSum=0.798;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3595,367,0 chrIV 1461557 . T C 2089 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7667;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=22.96;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2122,219,0 chrIV 1461567 . G C 1951 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=21.44;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1984,204,0 chrIV 1461591 . C T 2268 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=22.68;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2301,228,0 chrIV 1461847 . T G 1327 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.762;DP=93;Dels=0.00;FS=240.133;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=30.79;MQ0=0;MQRankSum=1.854;QD=14.27;ReadPosRankSum=5.959;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:29,64:93:91:1360,91,0 chrIV 1461955 . T C 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.770;QD=26.91;ReadPosRankSum=1.668;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1486,153,0 chrIV 1462035 . A C 1739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=80;Dels=0.00;FS=8.042;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;MQRankSum=0.755;QD=21.74;ReadPosRankSum=2.357;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1772,183,0 chrIV 1462057 . A G 1739 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;QD=19.11;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1772,186,0 chrIV 1462081 . T C 1546 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=0;QD=17.77;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1579,162,0 chrIV 1462089 . C A 1592 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=0;QD=17.30;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1625,165,0 chrIV 1462110 . A G 1548 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;QD=16.47;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1581,168,0 chrIV 1462394 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=26.38;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3456,340,0 chrIV 1462526 . A G 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.042;QD=24.33;ReadPosRankSum=1.648;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:3050,312,0 chrIV 1462655 . C T 2893 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.91;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2926,297,0 chrIV 1462703 . A G 2798 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.33;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2831,283,0 chrIV 1462739 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.98;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2974,298,0 chrIV 1462835 . A C 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=4.832;HaplotypeScore=8.6244;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.126;QD=24.80;ReadPosRankSum=1.708;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3547,361,0 chrIV 1462865 . C T 4166.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=9.2654;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.95;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4166,412,0 chrIV 1463461 . C T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.0580;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=24.31;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3501,352,0 chrIV 1463528 . A G 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.1049;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=1.114;QD=21.48;ReadPosRankSum=1.666;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3415,351,0 chrIV 1463543 . C A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.40;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3468,354,0 chrIV 1463657 . A G 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=129;Dels=0.00;FS=6.401;HaplotypeScore=9.6659;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.096;QD=23.43;ReadPosRankSum=2.412;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3055,315,0 chrIV 1463798 . G A 2785 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.02;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2818,285,0 chrIV 1463897 . T G 3538.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0656;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.68;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3538,358,0 chrIV 1463912 . T C 3641.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.95;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3641,367,0 chrIV 1464119 . G A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.0084;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.01;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3889,391,0 chrIV 1464206 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.11;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3605,361,0 chrIV 1464362 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.73;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2942,306,0 chrIV 1464424 . T C 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.280;QD=24.65;ReadPosRankSum=1.707;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3353,343,0 chrIV 1464464 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=27.05;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3760,370,0 chrIV 1464656 . A G 3159 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=21.64;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3192,331,0 chrIV 1464658 . C T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=22.72;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3295,322,0 chrIV 1464680 . T C 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=3.206;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.739;QD=18.20;ReadPosRankSum=1.656;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2508,252,0 chrIV 1465190 . T C 3485.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.9526;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.63;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3485,363,0 chrIV 1465247 . C T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.13;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3381,351,0 chrIV 1465349 . G A 3587.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.4833;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.07;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3587,349,0 chrIV 1465397 . C T 3428.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.9877;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.66;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3428,343,0 chrIV 1465643 . C T 4798.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=21.2862;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.86;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4798,472,0 chrIV 1465769 . G A 4349.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.2849;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=22.89;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4349,442,0 chrIV 1465791 . A G 3643.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=19.17;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3643,376,0 chrIV 1465800 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.280;DP=177;Dels=0.00;FS=4.901;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-0.195;QD=18.27;ReadPosRankSum=3.410;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:4,171:177:99:3266,337,0 chrIV 1465952 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.6027;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=25.09;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3094,307,0 chrIV 1466217 . T C 3550.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.65;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3550,372,0 chrIV 1466338 . G A 1889 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=22.49;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1922,198,0 chrIV 1466344 . A T 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=3.170;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.981;QD=22.31;ReadPosRankSum=0.063;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1907,201,0 chrIV 1466364 . G A 1981 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=23.58;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2014,198,0 chrIV 1466633 . T A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=24.39;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3609,352,0 chrIV 1466643 . C A 3490.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.3445;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=23.27;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3490,352,0 chrIV 1466759 . G T 5567.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=26.26;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5567,574,0 chrIV 1466914 . A G 8557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=331;Dels=0.00;FS=7.718;HaplotypeScore=15.8771;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.078;QD=25.85;ReadPosRankSum=2.435;SB=-3.921e+03 GT:AD:DP:GQ:PL 1/1:2,328:331:99:8557,854,0 chrIV 1466994 . G A 10710.01 filter AC=2;AF=1.00;AN=2;DP=406;Dels=0.00;FS=0.000;HaplotypeScore=29.4393;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=26.38;SB=-4.576e+03 GT:AD:DP:GQ:PL 1/1:0,406:406:99:10710,1055,0 chrIV 1467056 . C T 9427.01 filter AC=2;AF=1.00;AN=2;DP=381;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=24.74;SB=-5.483e+03 GT:AD:DP:GQ:PL 1/1:0,380:381:99:9427,953,0 chrIV 1467059 . C T 9321.01 filter AC=2;AF=1.00;AN=2;DP=383;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=24.34;SB=-5.239e+03 GT:AD:DP:GQ:PL 1/1:0,382:383:99:9321,914,0 chrIV 1467118 . A G 6476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.803;DP=310;Dels=0.00;FS=4.851;HaplotypeScore=10.6707;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-0.739;QD=20.89;ReadPosRankSum=3.778;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:5,305:310:99:6476,652,0 chrIV 1467130 . C A 6342.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=6.3578;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.17;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:6342,628,0 chrIV 1467260 . C T 6363.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=29.9384;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.74;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:6363,646,0 chrIV 1467392 . T A 5151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=197;Dels=0.00;FS=2.680;HaplotypeScore=8.7942;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=1.714;QD=26.15;ReadPosRankSum=2.412;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:5151,517,0 chrIV 1467544 . C T 4605.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.20;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:4605,498,0 chrIV 1467545 . T A 4610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=233;Dels=0.00;FS=11.096;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-1.091;QD=19.79;ReadPosRankSum=2.815;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:3,230:233:99:4610,498,0 chrIV 1467713 . A G 4622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.541;QD=24.33;ReadPosRankSum=1.714;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4622,469,0 chrIV 1467761 . G T 4068.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.5618;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=23.25;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:4068,412,0 chrIV 1467803 . T C 4363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=3.840;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-0.320;QD=23.71;ReadPosRankSum=1.694;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4363,442,0 chrIV 1467833 . T C 4243.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.57;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4243,439,0 chrIV 1467965 . C T 3984.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=24.44;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3984,397,0 chrIV 1468015 . T C 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=144;Dels=0.00;FS=2.992;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-0.148;QD=20.99;ReadPosRankSum=2.275;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:2,139:144:99:3056,312,0 chrIV 1468017 . T C 3064 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=21.43;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3097,318,0 chrIV 1468145 . A G 3755.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.9303;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.38;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3755,385,0 chrIV 1468191 . C T 3679.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.9589;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.53;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3679,367,0 chrIV 1468321 . G C 2942 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.96;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2975,306,0 chrIV 1468372 . G C 2187 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.23;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2220,228,0 chrIV 1468381 . G C 2220 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=22.20;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2253,231,0 chrIV 1468406 . C T 2329 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.29;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2362,228,0 chrIV 1468562 . G A 2040 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.9529;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.82;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2073,210,0 chrIV 1468720 . C A 2399 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.5337;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.42;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2432,246,0 chrIV 1468785 . G A 6523.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=11.2868;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=26.52;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:6523,637,0 chrIV 1468817 . C A 7098.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.12;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,302:307:99:7098,754,0 chrIV 1468900 . C T 4862.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=23.95;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4862,472,0 chrIV 1468935 . A G 3763.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.6416;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.38;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3763,396,0 chrIV 1469141 . T C 3999.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=24.53;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3999,415,0 chrIV 1469161 . A G 3946.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.42;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3946,400,0 chrIV 1469246 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=139.2251;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=0.16;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:6:55,6,0 chrIV 1469271 . A G 1992 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;QD=16.46;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2025,207,0 chrIV 1469289 . T A 2027 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.13;MQ0=0;QD=15.36;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2060,210,0 chrIV 1469311 . T A 3112 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=18.98;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3145,316,0 chrIV 1469501 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.2585;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=23.21;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3598,358,0 chrIV 1469510 . C T 3425.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=20.88;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3425,357,0 chrIV 1469751 . C T 1932 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.23;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1965,195,0 chrIV 1469888 . C T 3155 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.97;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3188,316,0 chrIV 1470079 . T G 5179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=220;Dels=0.00;FS=5.739;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.406;QD=23.54;ReadPosRankSum=2.868;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:3,217:220:99:5179,535,0 chrIV 1470784 . G A 3058 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.54;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3091,318,0 chrIV 1471025 . C A 2972 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=13.7325;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=24.36;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3005,304,0 chrIV 1471220 . G A 2813 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=24.04;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2846,291,0 chrIV 1471232 . C T 2598 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.79;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2631,262,0 chrIV 1471256 . C T 2415 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=23.68;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2448,252,0 chrIV 1471461 . T C 659 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=16.90;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:72:692,72,0 chrIV 1471524 . T C 1123 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=16.04;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1156,120,0 chrIV 1471529 . A G 1165 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=15.53;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1198,123,0 chrIV 1471657 . A G 3203 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.25;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3236,328,0 chrIV 1471830 . G A 5612.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=20.7624;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=25.28;SB=-3.002e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5612,562,0 chrIV 1471977 . T C 4854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.150;DP=224;Dels=0.00;FS=8.220;HaplotypeScore=19.5056;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.270;QD=21.67;ReadPosRankSum=3.405;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:4,215:224:99:4854,502,0 chrIV 1471999 . G A 5009.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.3001;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.30;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5009,523,0 chrIV 1472290 . A G 4717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=193;Dels=0.00;FS=2.990;HaplotypeScore=13.2284;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.881;QD=24.44;ReadPosRankSum=2.398;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:2,189:193:99:4717,487,0 chrIV 1472336 . C A 4140.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4140,409,0 chrIV 1472819 . G A 5473.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.9315;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.37;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:5473,541,0 chrIV 1473027 . A G 4181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=190;Dels=0.00;FS=2.456;HaplotypeScore=12.6239;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.457;QD=22.01;ReadPosRankSum=2.941;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:3,184:190:99:4181,430,0 chrIV 1473079 . C A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=16.9624;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.63;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3287,328,0 chrIV 1473233 . C T 1906 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.85;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1939,195,0 chrIV 1473269 . A G 1500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.956;QD=25.86;ReadPosRankSum=1.613;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1533,159,0 chrIV 1473316 . A G 1600 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1633,159,0 chrIV 1473634 . G C 1899 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.83;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1932,195,0 chrIV 1473635 . G C 1867 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.98;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1900,192,0 chrIV 1473860 . C A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=26.18;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3299,328,0 chrIV 1473918 . A G 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=135;Dels=0.00;FS=10.866;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.392;QD=21.81;ReadPosRankSum=2.377;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2978,309,0 chrIV 1473919 . A G 2999 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.89;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3032,304,0 chrIV 1474139 . A C 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=145;Dels=0.00;FS=2.586;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.266;QD=24.11;ReadPosRankSum=2.881;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:3496,352,0 chrIV 1474394 . T A 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.699;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-1.033;QD=24.88;ReadPosRankSum=-0.729;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2869,274,0 chrIV 1474416 . T C 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.752;QD=23.43;ReadPosRankSum=1.634;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2517,258,0 chrIV 1474473 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=21.38;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2492,243,0 chrIV 1474481 . C T 2315 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=19.96;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2348,237,0 chrIV 1474567 . C T 2610 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=25.10;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2643,259,0 chrIV 1474570 . T C 2521 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=24.01;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2554,267,0 chrIV 1474679 . C T 1546 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=22.74;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1579,153,0 chrIV 1474686 . A G 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.025;QD=24.51;ReadPosRankSum=1.682;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1724,177,0 chrIV 1474811 . A T 172.06 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=13.24;SB=-6.004e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:21:205,21,0 chrIV 1474885 . A G 659 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.36;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:72:692,72,0 chrIV 1475249 . G A 6282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=265;Dels=0.00;FS=3.736;HaplotypeScore=22.2062;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.200;QD=23.71;ReadPosRankSum=-1.053;SB=-3.099e+03 GT:AD:DP:GQ:PL 1/1:1,259:265:99:6282,631,0 chrIV 1475397 . G A 5398.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=18.3986;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.88;SB=-2.972e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:5398,532,0 chrIV 1475652 . T C 5583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.422;DP=227;Dels=0.00;FS=8.262;HaplotypeScore=17.5589;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.864;QD=24.59;ReadPosRankSum=3.383;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:4,221:227:99:5583,559,0 chrIV 1476051 . C T 5018.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.5600;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.69;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:5018,493,0 chrIV 1476401 . G C 8449.01 filter AC=2;AF=1.00;AN=2;DP=372;Dels=0.00;FS=0.000;HaplotypeScore=15.2141;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.71;SB=-4.241e+03 GT:AD:DP:GQ:PL 1/1:0,371:372:99:8449,862,0 chrIV 1476502 . T C 5806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=243;Dels=0.00;FS=10.633;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.963;QD=23.89;ReadPosRankSum=2.955;SB=-2.981e+03 GT:AD:DP:GQ:PL 1/1:3,240:243:99:5806,607,0 chrIV 1476572 . A G 4996.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.35;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4996,508,0 chrIV 1479403 . G A 4878.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=24.39;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4878,505,0 chrIV 1480271 . C A 4375.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.87;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4375,436,0 chrIV 1480835 . A G 2522 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2555,264,0 chrIV 1481071 . T C 1410 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.11;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1443,147,0 chrIV 1483243 . C T 4993.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.61;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4993,490,0 chrIV 1483478 . C T 4340.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.30;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4340,442,0 chrIV 1484273 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2771,277,0 chrIV 1484422 . A G 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.526;QD=25.09;ReadPosRankSum=1.639;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2868,300,0 chrIV 1484599 . G A 3022 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.77;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3055,304,0 chrIV 1484729 . T C 2789 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=22.67;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2822,285,0 chrIV 1484733 . A G 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.740;DP=120;Dels=0.00;FS=6.128;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-0.303;QD=22.22;ReadPosRankSum=2.925;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2699,270,0 chrIV 1484812 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.53;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2879,289,0 chrIV 1484890 . T C 4238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.584;QD=24.50;ReadPosRankSum=1.631;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4238,430,0 chrIV 1484977 . A G 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=156;Dels=0.00;FS=7.861;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-1.007;QD=24.38;ReadPosRankSum=2.402;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3804,394,0 chrIV 1485012 . G T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.1451;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=26.27;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:4045,391,0 chrIV 1485210 . C T 2982 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=19.0959;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.94;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3015,298,0 chrIV 1485253 . T C 2958 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.86;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2991,301,0 chrIV 1485375 . A T 848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.124;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=0.163;QD=16.00;ReadPosRankSum=2.357;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:87:881,87,0 chrIV 1485403 . G A 75.51 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=32.8249;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=1.64;SB=-3.252e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:12:108,12,0 chrIV 1485510 . G A 746 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=21.94;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:78:779,78,0 chrIV 1485530 . T A 482 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=24.10;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:51:515,51,0 chrIV 1485542 . C T 267 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.07;SB=-1.459e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:30:300,30,0 chrIV 1485724 . T G 2921 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.05;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2954,309,0 chrIV 1485812 . A G 3467.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.47;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3467,355,0 chrIV 1486110 . T C 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.489;QD=26.06;ReadPosRankSum=1.710;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:4065,415,0 chrIV 1486166 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.40;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2967,289,0 chrIV 1486178 . A G 2873 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.67;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,135:139:99:2906,300,0 chrIV 1486808 . T C 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.764;DP=149;Dels=0.00;FS=15.432;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.836;QD=20.77;ReadPosRankSum=4.038;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:6,141:149:99:3127,324,0 chrIV 1487095 . T A 2840 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.36;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2873,283,0 chrIV 1487442 . C G 1987 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.08;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2020,213,0 chrIV 1487490 . G A 1986 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=17.89;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2019,240,0 chrIV 1487491 . A G 2027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.697;QD=18.43;ReadPosRankSum=2.845;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2060,243,0 chrIV 1487875 . A G 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.735;DP=118;Dels=0.00;FS=5.830;HaplotypeScore=9.0747;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.556;QD=23.19;ReadPosRankSum=2.872;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2769,282,0 chrIV 1487917 . C A 1952 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=22.44;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1985,192,0 chrIV 1487920 . T C 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=86;Dels=0.00;FS=3.274;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-1.325;QD=21.00;ReadPosRankSum=1.691;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1839,186,0 chrIV 1487967 . A G 1962 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.3033;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.04;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1995,204,0 chrIV 1488034 . G A 2518 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.48;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2551,258,0 chrIV 1488040 . T C 2658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=121;Dels=0.00;FS=6.130;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.681;QD=21.97;ReadPosRankSum=2.409;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2691,267,0 chrIV 1488084 . A T 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=121;Dels=0.00;FS=6.130;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.010;QD=22.03;ReadPosRankSum=2.389;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2699,273,0 chrIV 1488306 . G A 4983.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.2813;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=26.79;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4983,487,0 chrIV 1488682 . C T 4470.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.70;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4470,460,0 chrIV 1488754 . C A 4656.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.25;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4656,475,0 chrIV 1488904 . C T 4922.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.91;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4922,478,0 chrIV 1489057 . C T 2716 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.63;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2749,288,0 chrIV 1489122 . T C 2399 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=21.61;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2432,240,0 chrIV 1489245 . C T 681 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;QD=15.48;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,43:44:72:714,72,0 chrIV 1489546 . A T 2576 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.53;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2609,259,0 chrIV 1489717 . G C 1615 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.44;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1648,168,0 chrIV 1490059 . G T 3729.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.83;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3729,376,0 chrIV 1490249 . C T 4905.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.8599;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.65;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4905,505,0 chrIV 1490594 . C T 3719.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=17.4017;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.63;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3719,367,0 chrIV 1490862 . C T 2625 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=20.67;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2658,265,0 chrIV 1490977 . G A 3729.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.54;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3729,391,0 chrIV 1491114 . A C 2979 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.62;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:3012,312,0 chrIV 1491138 . T C 2915 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=24.29;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2948,303,0 chrIV 1491321 . C G 3592.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.63;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3592,376,0 chrIV 1491446 . A T 4519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=180;Dels=0.00;FS=4.559;HaplotypeScore=10.8624;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.866;QD=25.11;ReadPosRankSum=1.674;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4519,451,0 chrIV 1491519 . C T 4915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=193;Dels=0.00;FS=4.467;HaplotypeScore=10.4855;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.104;QD=25.47;ReadPosRankSum=-0.727;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4915,484,0 chrIV 1491574 . G A 5117.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=25.08;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5117,505,0 chrIV 1491605 . T A 4610.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=23.52;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4610,451,0 chrIV 1491619 . G A 4424.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.79;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4424,448,0 chrIV 1491666 . A G 5326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.458;QD=23.88;ReadPosRankSum=1.717;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:5326,541,0 chrIV 1491852 . A G 5889.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=26.17;SB=-3.038e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5889,604,0 chrIV 1491879 . C T 5060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.962;DP=208;Dels=0.00;FS=3.074;HaplotypeScore=3.3425;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.092;QD=24.33;ReadPosRankSum=1.699;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:5060,491,0 chrIV 1491889 . G A 4965.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=23.42;SB=-2.920e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4965,502,0 chrIV 1491939 . C T 4050.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=16.1627;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.77;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4050,409,0 chrIV 1491981 . C T 5407.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.4816;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.90;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:5407,538,0 chrIV 1492309 . T G 3550.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.65;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3550,364,0 chrIV 1492576 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.02;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3235,319,0 chrIV 1492828 . C T 4105.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2990;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=27.01;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:4105,412,0 chrIV 1492922 . G A 4128.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.3709;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=25.80;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4128,427,0 chrIV 1493045 . A G 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=156;Dels=0.00;FS=3.020;HaplotypeScore=5.9430;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=-0.118;QD=23.83;ReadPosRankSum=2.387;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3718,382,0 chrIV 1493055 . T C 3654.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=22.84;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3654,373,0 chrIV 1493088 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=124.7708;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=19.70;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3263,322,0 chrIV 1493251 . A G 2931 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=3.278;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;MQRankSum=-0.543;QD=21.87;ReadPosRankSum=1.706;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2964,300,0 chrIV 1493255 . C T 2946 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=21.99;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2979,300,0 chrIV 1493260 . G T 2887 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=21.39;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2920,300,0 chrIV 1493468 . G T 2169 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=17.93;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2202,222,0 chrIV 1493474 . G A 2135 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=18.25;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2168,216,0 chrIV 1493509 . T A 2817 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.5934;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=19.70;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2850,280,0 chrIV 1493527 . C T 3175 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.1013;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=19.97;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3208,319,0 chrIV 1493685 . C A 2872 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.3534;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=25.19;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2905,294,0 chrIV 1493732 . T G 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=4.412;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-1.344;QD=22.19;ReadPosRankSum=1.702;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2629,267,0 chrIV 1493806 . A G 3951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.728;QD=23.24;ReadPosRankSum=1.712;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3951,400,0 chrIV 1493820 . A G 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-0.415;QD=22.02;ReadPosRankSum=1.712;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3809,391,0 chrIV 1493831 . G A 3574.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=22.34;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3574,367,0 chrIV 1493869 . G A 3142 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.3653;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=19.64;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3175,316,0 chrIV 1493916 . T C 4638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.3151;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.813;QD=25.62;ReadPosRankSum=1.694;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4638,475,0 chrIV 1493956 . C T 4997.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=24.14;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4997,499,0 chrIV 1493975 . C T 4968.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.8257;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.55;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4968,496,0 chrIV 1494944 . T A 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.563;QD=25.28;ReadPosRankSum=1.624;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:4044,394,0 chrIV 1494974 . T C 3712.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.2856;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.49;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3712,385,0 chrIV 1495032 . A G 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=144;Dels=0.00;FS=2.979;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.143;QD=23.78;ReadPosRankSum=2.346;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3424,357,0 chrIV 1495218 . G A 4593.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=25.52;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4593,451,0 chrIV 1495512 . A C 4971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=226;Dels=0.00;FS=3.393;HaplotypeScore=6.5903;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-1.655;QD=22.00;ReadPosRankSum=1.717;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:4971,511,0 chrIV 1495521 . T C 4755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=224;Dels=0.00;FS=2.995;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-0.448;QD=21.23;ReadPosRankSum=2.372;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:2,221:224:99:4755,493,0 chrIV 1495550 . G A 5423.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=6.9486;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=22.04;SB=-3.095e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5423,568,0 chrIV 1495580 . C A 4982.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.04;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4982,496,0 chrIV 1495680 . C T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.2991;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.81;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3247,325,0 chrIV 1495814 . G A 1745 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.66;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1778,180,0 chrIV 1496077 . T C 1210 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=61.40;MQ0=0;QD=26.30;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1243,129,0 chrIV 1496312 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=135;Dels=0.00;FS=7.534;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.392;QD=24.93;ReadPosRankSum=2.340;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3366,340,0 chrIV 1496498 . C T 3765.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.9989;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=25.61;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3765,367,0 chrIV 1496691 . C A 4955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.6694;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.322;QD=26.64;ReadPosRankSum=1.360;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4955,493,0 chrIV 1496788 . A G 5459.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.1821;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=26.89;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,198:203:99:5459,547,0 chrIV 1497133 . A T 6933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=11.3211;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.936;QD=25.30;ReadPosRankSum=1.707;SB=-3.675e+03 GT:AD:DP:GQ:PL 1/1:1,273:274:99:6933,691,0 chrIV 1497214 . G A 6771.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=18.9523;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.44;SB=-3.234e+03 GT:AD:DP:GQ:PL 1/1:0,274:276:99:6771,664,0 chrIV 1497679 . G C 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=182;Dels=0.00;FS=4.747;HaplotypeScore=10.3530;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.171;QD=20.19;ReadPosRankSum=0.552;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3674,382,0 chrIV 1497717 . T G 3837.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.30;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:3837,388,0 chrIV 1497793 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.93;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3279,328,0 chrIV 1497881 . T C 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=139;Dels=0.00;FS=5.920;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.138;QD=25.22;ReadPosRankSum=2.921;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3505,366,0 chrIV 1498005 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=16.2146;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.23;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,69:77:99:1591,165,0 chrIV 1498087 . C G 2745 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.61;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2778,285,0 chrIV 1498564 . C G 3999.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.97;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3999,400,0 chrIV 1498915 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.31;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3315,331,0 chrIV 1498969 . G C 2630 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6210;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.91;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2663,276,0 chrIV 1499290 . C T 3661.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.25;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3661,361,0 chrIV 1499328 . G A 3584.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.83;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3584,352,0 chrIV 1499382 . T C 2587 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.92;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2620,270,0 chrIV 1499487 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.6061;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.29;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2613,259,0 chrIV 1500051 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3262,316,0 chrIV 1500134 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=11.1349;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.19;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2549,250,0 chrIV 1500509 . T C 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=3.163;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.020;QD=22.79;ReadPosRankSum=1.652;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3988,412,0 chrIV 1500698 . C G 3131 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.05;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3164,330,0 chrIV 1500757 . A G 3180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.1363;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.460;QD=24.46;ReadPosRankSum=1.705;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:3213,333,0 chrIV 1500945 . G A 2136 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=25.13;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2169,216,0 chrIV 1501006 . A C 2461 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.78;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2494,252,0 chrIV 1501020 . T C 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=5.307;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.526;QD=19.77;ReadPosRankSum=1.701;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2267,234,0 chrIV 1501077 . T A 1133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.210;DP=72;Dels=0.00;FS=6.586;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=1.148;QD=15.74;ReadPosRankSum=2.347;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1166,120,0 chrIV 1501132 . G C 3106 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=25.46;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3139,319,0 chrIV 1501182 . G C 3092 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=26.89;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3125,319,0 chrIV 1501212 . C T 2291 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=25.46;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2324,246,0 chrIV 1501236 . T A 1759 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=22.55;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1792,177,0 chrIV 1501238 . T C 1767 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=22.95;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1800,183,0 chrIV 1501321 . T A 2362 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=19.05;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2395,252,0 chrIV 1501322 . T C 2577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=131;Dels=0.00;FS=6.084;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=0.115;QD=19.67;ReadPosRankSum=2.854;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2610,264,0 chrIV 1501359 . G A 3095 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=18.87;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3128,301,0 chrIV 1501368 . C G 2830 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=17.36;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:2863,294,0 chrIV 1501404 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.25;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2690,265,0 chrIV 1501453 . T C 3199 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=25.80;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3232,330,0 chrIV 1501555 . A G 3182 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.5318;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.94;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3215,348,0 chrIV 1501681 . T C 4926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=183;Dels=0.00;FS=2.901;HaplotypeScore=11.4346;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.763;QD=26.92;ReadPosRankSum=2.382;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4926,493,0 chrIV 1501840 . G A 4648.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.5029;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=24.72;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4648,460,0 chrIV 1501879 . C T 4398.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=6.4910;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.17;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4398,468,0 chrIV 1501882 . C T 4806.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.1249;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=22.46;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4806,472,0 chrIV 1501936 . T C 4218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=196;Dels=0.00;FS=3.102;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=0.541;QD=21.52;ReadPosRankSum=1.696;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:1,191:196:99:4218,433,0 chrIV 1502106 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=4.624;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.633;QD=24.76;ReadPosRankSum=1.708;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3590,372,0 chrIV 1502303 . C G 2737 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2770,279,0 chrIV 1502377 . G A 2688 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.89;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2721,288,0 chrIV 1502494 . T C 2393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=105;Dels=0.00;FS=3.136;HaplotypeScore=7.2541;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.742;QD=22.79;ReadPosRankSum=1.699;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2426,240,0 chrIV 1502550 . A G 2639 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.66;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2672,273,0 chrIV 1502666 . T C 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=123;Dels=0.00;FS=3.468;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.289;QD=23.12;ReadPosRankSum=1.674;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,119:123:99:2877,297,0 chrIV 1502742 . T A 2323 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.31;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2356,249,0 chrIV 1502817 . C T 2420 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=24.95;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2453,235,0 chrIV 1502831 . T G 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=0.354;QD=23.91;ReadPosRankSum=1.695;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2257,225,0 chrIV 1502849 . C T 1858 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=19.98;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1891,189,0 chrIV 1502908 . C G 1767 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.5665;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.63;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,86:90:99:1800,183,0 chrIV 1503023 . T C 2249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=3.222;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-1.567;QD=21.42;ReadPosRankSum=1.600;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2282,231,0 chrIV 1503206 . T C 4584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-2.243;QD=25.75;ReadPosRankSum=2.353;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4584,466,0 chrIV 1503301 . T C 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.957;QD=24.30;ReadPosRankSum=1.709;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3718,376,0 chrIV 1503303 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=24.59;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3762,379,0 chrIV 1503329 . G A 3349.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.6654;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=21.89;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3349,337,0 chrIV 1503587 . A G 4068.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=23.65;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4068,415,0 chrIV 1503593 . A G 4082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;MQRankSum=-0.969;QD=24.15;ReadPosRankSum=1.691;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:4082,432,0 chrIV 1503632 . T A 4245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=3.953;HaplotypeScore=6.2694;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;MQRankSum=1.098;QD=25.88;ReadPosRankSum=1.711;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4245,436,0 chrIV 1503648 . G A 4427.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=24.87;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4427,448,0 chrIV 1503693 . G C 5049.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=26.43;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5049,529,0 chrIV 1503776 . A G 3443.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0656;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;QD=19.67;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3443,358,0 chrIV 1503861 . A G 84.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.08;MQ0=0;MQRankSum=1.148;QD=1.02;ReadPosRankSum=1.690;SB=-9.205e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:12:117,12,0 chrIV 1503884 . A C 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.875;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=18.0622;MLEAC=1;MLEAF=0.500;MQ=28.37;MQ0=0;MQRankSum=0.361;QD=0.13;ReadPosRankSum=-0.283;SB=-4.840e+02 GT:AD:DP:GQ:PL 0/1:34,53:87:41:41,0,102 chrIV 1503885 . A G 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.555;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=18.0622;MLEAC=1;MLEAF=0.500;MQ=28.34;MQ0=0;MQRankSum=-0.962;QD=0.16;ReadPosRankSum=-1.038;SB=-5.070e+02 GT:AD:DP:GQ:PL 0/1:30,53:83:43:43,0,103 chrIV 1503887 . G A 72.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.244;DP=78;Dels=0.00;FS=0.928;HaplotypeScore=18.8944;MLEAC=1;MLEAF=0.500;MQ=28.30;MQ0=0;MQRankSum=1.799;QD=0.92;ReadPosRankSum=2.623;SB=-1.710e+02 GT:AD:DP:GQ:PL 0/1:53,25:78:39:102,0,39 chrIV 1503903 . G A 334.34 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;DP=43;Dels=0.00;FS=3.495;HaplotypeScore=12.2604;MLEAC=1;MLEAF=0.500;MQ=30.97;MQ0=2;MQRankSum=0.050;QD=7.78;ReadPosRankSum=-4.517;SB=-7.134e+01 GT:AD:DP:GQ:PL 0/1:9,32:43:8:364,0,8 chrIV 1503921 . G A 956 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.869;DP=99;Dels=0.00;FS=2.790;HaplotypeScore=75.1452;MLEAC=2;MLEAF=1.00;MQ=32.59;MQ0=6;MQRankSum=-0.530;QD=9.66;ReadPosRankSum=-0.712;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:11,86:99:99:989,105,0 chrIV 1503947 . G A 588.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.857;DP=204;Dels=0.00;FS=2.039;HaplotypeScore=19.7769;MLEAC=1;MLEAF=0.500;MQ=37.88;MQ0=8;MQRankSum=-1.541;QD=2.88;ReadPosRankSum=-1.396;SB=-2.850e+02 GT:AD:DP:GQ:PL 0/1:139,62:204:99:618,0,2023 chrIV 1503965 . G A 2156.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.752;DP=232;Dels=0.00;FS=5.525;HaplotypeScore=10.6766;MLEAC=1;MLEAF=0.500;MQ=37.85;MQ0=8;MQRankSum=0.351;QD=9.29;ReadPosRankSum=-0.821;SB=-7.090e+02 GT:AD:DP:GQ:PL 0/1:77,153:232:99:2186,0,917 chrIV 1503983 . G A 361.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.377;DP=314;Dels=0.00;FS=26.009;HaplotypeScore=100.7246;MLEAC=1;MLEAF=0.500;MQ=37.24;MQ0=8;MQRankSum=-3.192;QD=1.15;ReadPosRankSum=2.447;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:256,56:314:99:391,0,3015 chrIV 1503993 . G A 4825.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.997;DP=307;Dels=0.00;FS=69.631;HaplotypeScore=238.9791;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=6;MQRankSum=0.190;QD=15.72;ReadPosRankSum=3.000;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:32,275:307:99:4825,504,0 chrIV 1504019 . A G 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.811;DP=280;Dels=0.00;FS=44.819;HaplotypeScore=35.0161;MLEAC=2;MLEAF=1.00;MQ=35.29;MQ0=2;MQRankSum=2.985;QD=12.47;ReadPosRankSum=5.539;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:48,231:280:99:3492,378,0 chrIV 1504024 . C T 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.772;DP=254;Dels=0.00;FS=68.998;HaplotypeScore=46.9256;MLEAC=2;MLEAF=1.00;MQ=35.51;MQ0=1;MQRankSum=0.070;QD=11.65;ReadPosRankSum=6.909;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:28,224:254:99:2993,327,0 chrIV 1504046 . A G 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=256;Dels=0.00;FS=4.981;HaplotypeScore=14.0102;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;MQRankSum=0.333;QD=15.43;ReadPosRankSum=1.705;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:1,254:256:99:3950,432,0 chrIV 1504103 . G A 8411.01 filter AC=2;AF=1.00;AN=2;DP=405;Dels=0.00;FS=0.000;HaplotypeScore=10.2481;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=22;QD=20.77;SB=-2.881e+03 GT:AD:DP:GQ:PL 1/1:0,403:405:99:8411,853,0 chrIV 1504127 . G A 331.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.634;DP=493;Dels=0.00;FS=10.568;HaplotypeScore=24.7832;MLEAC=1;MLEAF=0.500;MQ=40.24;MQ0=46;MQRankSum=-3.044;QD=0.67;ReadPosRankSum=-4.804;SB=-2.950e+02 GT:AD:DP:GQ:PL 0/1:377,113:493:99:361,0,6427 chrIV 1504175 . G A 757.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.683;DP=469;Dels=0.00;FS=35.743;HaplotypeScore=28.2662;MLEAC=1;MLEAF=0.500;MQ=36.95;MQ0=39;MQRankSum=-0.376;QD=1.61;ReadPosRankSum=2.520;SB=-2.420e+02 GT:AD:DP:GQ:PL 0/1:358,109:469:99:787,0,5643 chrIV 1504193 . A G 6309.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.472;DP=442;Dels=0.00;FS=15.387;HaplotypeScore=25.2108;MLEAC=1;MLEAF=0.500;MQ=38.10;MQ0=26;MQRankSum=-0.531;QD=14.27;ReadPosRankSum=6.585;SB=-3.646e+03 GT:AD:DP:GQ:PL 0/1:81,358:442:99:6309,0,450 chrIV 1504222 . T C 8447.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=382;Dels=0.00;FS=14.982;HaplotypeScore=19.6231;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=3;MQRankSum=0.408;QD=22.11;ReadPosRankSum=2.367;SB=-4.752e+03 GT:AD:DP:GQ:PL 1/1:7,372:382:99:8447,880,0 chrIV 1504234 . G A 8062.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.705;DP=433;Dels=0.00;FS=29.093;HaplotypeScore=56.1865;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=1;MQRankSum=3.620;QD=18.62;ReadPosRankSum=5.625;SB=-4.634e+03 GT:AD:DP:GQ:PL 1/1:45,382:433:99:8062,294,0 chrIV 1504290 . A G 14037.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=705;Dels=0.00;FS=2.977;HaplotypeScore=37.2656;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=18;MQRankSum=0.699;QD=19.91;ReadPosRankSum=2.407;SB=-8.470e+03 GT:AD:DP:GQ:PL 1/1:2,702:705:99:14037,1340,0 chrIV 1504297 . C T 1660.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.591;DP=726;Dels=0.00;FS=2.411;HaplotypeScore=35.3586;MLEAC=1;MLEAF=0.500;MQ=45.22;MQ0=21;MQRankSum=-3.836;QD=2.29;ReadPosRankSum=5.225;SB=-1.333e+03 GT:AD:DP:GQ:PL 0/1:463,255:726:99:1690,0,5934 chrIV 1504301 . T C 2295.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.522;DP=738;Dels=0.00;FS=2.776;HaplotypeScore=38.8126;MLEAC=1;MLEAF=0.500;MQ=45.07;MQ0=22;MQRankSum=-4.235;QD=3.11;ReadPosRankSum=3.741;SB=-1.844e+03 GT:AD:DP:GQ:PL 0/1:467,268:738:99:2325,0,5911 chrIV 1504322 . G A 4434.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.465;DP=742;Dels=0.00;FS=11.465;HaplotypeScore=28.6553;MLEAC=1;MLEAF=0.500;MQ=43.25;MQ0=41;MQRankSum=7.511;QD=5.98;ReadPosRankSum=2.787;SB=-3.100e+03 GT:AD:DP:GQ:PL 0/1:325,416:742:99:4434,0,3072 chrIV 1504370 . G A 5281.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.171;DP=527;Dels=0.00;FS=39.207;HaplotypeScore=88.5657;MLEAC=1;MLEAF=0.500;MQ=38.45;MQ0=43;MQRankSum=5.715;QD=10.02;ReadPosRankSum=-4.534;SB=-2.575e+03 GT:AD:DP:GQ:PL 0/1:164,358:527:99:5281,0,847 chrIV 1504373 . G A 388.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.218;DP=519;Dels=0.00;FS=160.150;HaplotypeScore=86.8789;MLEAC=1;MLEAF=0.500;MQ=37.95;MQ0=43;MQRankSum=1.625;QD=0.75;ReadPosRankSum=1.309;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:419,98:519:99:418,0,5767 chrIV 1504388 . G A 5952.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.613;DP=485;Dels=0.00;FS=36.080;HaplotypeScore=21.2397;MLEAC=1;MLEAF=0.500;MQ=37.30;MQ0=34;MQRankSum=4.865;QD=12.27;ReadPosRankSum=5.785;SB=-3.802e+03 GT:AD:DP:GQ:PL 0/1:111,374:485:97:5952,0,97 chrIV 1504438 . T C 5188.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.808;DP=414;Dels=0.00;FS=85.376;HaplotypeScore=21.3842;MLEAC=2;MLEAF=1.00;MQ=37.94;MQ0=1;MQRankSum=5.478;QD=12.53;ReadPosRankSum=3.933;SB=-4.278e+03 GT:AD:DP:GQ:PL 1/1:29,384:414:99:5188,109,0 chrIV 1504445 . T C 118.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.156;DP=413;Dels=0.00;FS=90.813;HaplotypeScore=28.6021;MLEAC=1;MLEAF=0.500;MQ=35.83;MQ0=0;MQRankSum=-5.673;QD=0.29;ReadPosRankSum=-2.336;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:364,40:413:99:148,0,4443 chrIV 1504449 . G A 260.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;DP=419;Dels=0.00;FS=99.456;HaplotypeScore=25.3653;MLEAC=1;MLEAF=0.500;MQ=33.96;MQ0=0;MQRankSum=-2.515;QD=0.62;ReadPosRankSum=-2.122;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:365,53:419:99:290,0,3771 chrIV 1504461 . T A 1576.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.422;DP=275;Dels=0.00;FS=147.639;HaplotypeScore=25.8287;MLEAC=1;MLEAF=0.500;MQ=30.20;MQ0=0;MQRankSum=4.074;QD=5.73;ReadPosRankSum=9.390;SB=-2.373e+03 GT:AD:DP:GQ:PL 0/1:75,197:275:99:1606,0,721 chrIV 1504463 . A T 1570.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819;DP=267;Dels=0.00;FS=156.381;HaplotypeScore=23.0990;MLEAC=1;MLEAF=0.500;MQ=28.90;MQ0=0;MQRankSum=5.168;QD=5.88;ReadPosRankSum=11.225;SB=-2.461e+03 GT:AD:DP:GQ:PL 0/1:76,191:267:99:1600,0,714 chrIV 1504465 . C G 1346.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.638;DP=260;Dels=0.00;FS=145.760;HaplotypeScore=39.3050;MLEAC=1;MLEAF=0.500;MQ=27.58;MQ0=0;MQRankSum=4.479;QD=5.18;ReadPosRankSum=12.157;SB=-2.355e+03 GT:AD:DP:GQ:PL 0/1:74,186:260:99:1376,0,680 chrIV 1504466 . G A 1365.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.914;DP=260;Dels=0.00;FS=145.760;HaplotypeScore=39.3050;MLEAC=1;MLEAF=0.500;MQ=27.58;MQ0=0;MQRankSum=2.183;QD=5.25;ReadPosRankSum=12.199;SB=-2.340e+03 GT:AD:DP:GQ:PL 0/1:74,186:260:99:1395,0,701 chrIV 1504468 . C A 1325.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.905;DP=260;Dels=0.00;FS=130.726;HaplotypeScore=39.3050;MLEAC=1;MLEAF=0.500;MQ=27.58;MQ0=0;MQRankSum=3.382;QD=5.10;ReadPosRankSum=12.413;SB=-2.258e+03 GT:AD:DP:GQ:PL 0/1:75,185:260:99:1355,0,684 chrIV 1504470 . A G 1337.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.757;DP=260;Dels=0.00;FS=103.367;HaplotypeScore=38.3385;MLEAC=1;MLEAF=0.500;MQ=27.58;MQ0=0;MQRankSum=3.558;QD=5.14;ReadPosRankSum=9.249;SB=-2.343e+03 GT:AD:DP:GQ:PL 0/1:56,204:260:99:1367,0,709 chrIV 1504474 . A C 1490.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.682;DP=279;Dels=0.00;FS=154.947;HaplotypeScore=37.3294;MLEAC=1;MLEAF=0.500;MQ=26.93;MQ0=1;MQRankSum=2.244;QD=5.34;ReadPosRankSum=10.272;SB=-2.393e+03 GT:AD:DP:GQ:PL 0/1:74,205:279:99:1520,0,727 chrIV 1504493 . A G 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=188;Dels=0.00;FS=5.924;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=3;MQRankSum=-0.995;QD=6.24;ReadPosRankSum=2.962;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:1206,126,0 chrIV 1504507 . C T 947 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.487;DP=163;Dels=0.00;FS=11.082;HaplotypeScore=6.8664;MLEAC=2;MLEAF=1.00;MQ=25.14;MQ0=4;MQRankSum=3.330;QD=5.81;ReadPosRankSum=2.940;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:6,151:163:99:980,105,0 chrIV 1504511 . T C 870 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.310;DP=170;Dels=0.00;FS=14.043;HaplotypeScore=9.6685;MLEAC=2;MLEAF=1.00;MQ=24.48;MQ0=4;MQRankSum=4.496;QD=5.12;ReadPosRankSum=4.923;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:14,156:170:70:903,70,0 chrIV 1504520 . T A 830 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=182;Dels=0.00;FS=6.145;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=22.67;MQ0=6;MQRankSum=-1.291;QD=4.56;ReadPosRankSum=2.422;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:90:863,90,0 chrIV 1504541 . A G 1406 filter AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.0895;MLEAC=2;MLEAF=1.00;MQ=22.21;MQ0=12;QD=6.93;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,200:203:99:1439,159,0 chrIV 1504583 . G A 5937.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.164;DP=370;Dels=0.00;FS=93.940;HaplotypeScore=12.3882;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=16;MQRankSum=7.969;QD=16.05;ReadPosRankSum=-0.026;SB=-3.507e+03 GT:AD:DP:GQ:PL 1/1:33,336:370:99:5937,588,0 chrIV 1504663 . T C 8123.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=383;Dels=0.00;FS=6.405;HaplotypeScore=21.6867;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;MQRankSum=0.164;QD=21.21;ReadPosRankSum=2.411;SB=-5.263e+03 GT:AD:DP:GQ:PL 1/1:2,380:383:99:8123,835,0 chrIV 1504685 . T C 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.166;DP=317;Dels=0.00;FS=14.127;HaplotypeScore=30.8538;MLEAC=1;MLEAF=0.500;MQ=44.05;MQ0=0;MQRankSum=-8.156;QD=0.13;ReadPosRankSum=-2.256;SB=-2.710e+02 GT:AD:DP:GQ:PL 0/1:250,66:317:71:71,0,5049 chrIV 1504689 . T G 259.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.241;DP=310;Dels=0.00;FS=18.904;HaplotypeScore=23.7556;MLEAC=1;MLEAF=0.500;MQ=43.61;MQ0=0;MQRankSum=-8.457;QD=0.84;ReadPosRankSum=0.313;SB=-2.720e+02 GT:AD:DP:GQ:PL 0/1:228,79:310:99:289,0,4456 chrIV 1504713 . A G 283.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.947;DP=216;Dels=0.00;FS=62.252;HaplotypeScore=12.6076;MLEAC=1;MLEAF=0.500;MQ=35.87;MQ0=0;MQRankSum=3.918;QD=1.31;ReadPosRankSum=-8.716;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,64:216:99:313,0,2380 chrIV 1504938 . G A 1663 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=40.40;MQ0=0;QD=18.48;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1696,168,0 chrIV 1504947 . A G 1336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=86;Dels=0.00;FS=6.147;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=-1.695;QD=15.53;ReadPosRankSum=2.895;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1369,138,0 chrIV 1504951 . C G 1425 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.69;MQ0=0;QD=16.96;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1458,147,0 chrIV 1504971 . C A 1475 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=16.39;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1508,150,0 chrIV 1504976 . G A 1559 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=16.24;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,93:96:99:1592,156,0 chrIV 1505138 . T A 4354.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=29.62;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4354,421,0 chrIV 1505397 . T C 1596 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.47;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1629,165,0 chrIV 1505437 . A G 1855 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1760;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.62;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1888,198,0 chrIV 1505562 . A G 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=94;Dels=0.00;FS=4.197;HaplotypeScore=12.4642;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.377;QD=26.29;ReadPosRankSum=1.694;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,91:94:99:2504,255,0 chrIV 1505642 . C T 2336 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=25.67;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2369,243,0 chrIV 1505691 . G C 1101 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;QD=18.98;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1134,117,0 chrIV 1505703 . A G 1010 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=19.06;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1043,105,0 chrIV 1505716 . T C 470 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.83;MQ0=0;QD=13.43;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:51:503,51,0 chrIV 1505722 . C T 408 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=13.60;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:45:441,45,0 chrIV 1505728 . G A 260 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.37;MQ0=0;QD=10.40;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:30:293,30,0 chrIV 1505809 . C G 2621 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.84;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2654,267,0 chrIV 1505850 . G A 2764 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=111.7593;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.47;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2797,274,0 chrIV 1505951 . A G 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=3.378;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=1.311;QD=26.63;ReadPosRankSum=1.685;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3968,403,0 chrIV 1506008 . C T 3952.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=25.83;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3952,400,0 chrIV 1506371 . G A 3143 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.2816;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.98;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3176,313,0 chrIV 1506542 . G A 4499.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.3052;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.28;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4499,454,0 chrIV 1506740 . A G 4888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=195;Dels=0.00;FS=6.084;HaplotypeScore=14.1998;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.084;QD=25.07;ReadPosRankSum=2.964;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:3,190:195:99:4888,511,0 chrIV 1506853 . C T 4746.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=18.0421;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.21;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,190:196:99:4746,463,0 chrIV 1506970 . G A 2827 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.09;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2860,286,0 chrIV 1506992 . G C 2261 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.7789;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=17.53;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,125:129:99:2294,231,0 chrIV 1506999 . A G 2345 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0670;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=17.24;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2378,243,0 chrIV 1507078 . A G 4998.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=2.7761;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.02;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4998,514,0 chrIV 1507082 . C G 5213.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.76;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,224:229:99:5213,523,0 chrIV 1507540 . T G 5835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=312;Dels=0.00;FS=5.329;HaplotypeScore=13.4506;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.333;QD=18.70;ReadPosRankSum=1.721;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:1,307:312:99:5835,595,0 chrIV 1507780 . G A 2809 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2842,280,0 chrIV 1507981 . A G 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=121;Dels=0.00;FS=4.260;HaplotypeScore=15.9605;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.732;QD=25.64;ReadPosRankSum=1.703;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:3136,313,0 chrIV 1508454 . G A 5155.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=14.2226;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.54;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:5155,541,0 chrIV 1508550 . T C 5310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.8152;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.528;QD=25.17;ReadPosRankSum=1.716;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:5310,547,0 chrIV 1508583 . G T 5567.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.2661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.20;SB=-3.265e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5567,562,0 chrIV 1508644 . C T 5380.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=13.4379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5380,532,0 chrIV 1509009 . C G 2855 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2888,306,0 chrIV 1509719 . C T 3487.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.5628;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.72;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3487,363,0 chrIV 1510214 . C T 4599.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.8899;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=26.28;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4599,454,0 chrIV 1510368 . C T 4055.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;QD=19.59;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4055,403,0 chrIV 1510383 . A C 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.419;DP=213;Dels=0.00;FS=18.128;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=0;MQRankSum=-2.060;QD=16.90;ReadPosRankSum=3.411;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:4,209:213:99:3600,361,0 chrIV 1510411 . A G 2563 SnpCluster AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.9577;MLEAC=2;MLEAF=1.00;MQ=37.61;MQ0=0;QD=12.38;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:2596,267,0 chrIV 1510417 . G A 2395 SnpCluster AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.96;MQ0=0;QD=11.68;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:2428,252,0 chrIV 1510421 . G T 2226 SnpCluster AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.28;MQ0=0;QD=11.47;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:2259,237,0 chrIV 1510422 . G A 2197 SnpCluster AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;QD=11.44;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:2230,231,0 chrIV 1510501 . G A 3490.01 SnpCluster AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=18.18;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3490,343,0 chrIV 1510510 . C A 2720 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=4.665;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-0.463;QD=13.47;ReadPosRankSum=1.629;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:2753,335,0 chrIV 1510511 . T C 2728 SnpCluster AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=13.44;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:2761,335,0 chrIV 1510552 . T C 4024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=213;Dels=0.00;FS=8.568;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=-0.425;QD=18.89;ReadPosRankSum=2.380;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:2,209:213:99:4024,412,0 chrIV 1510882 . G A 5201.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.3595;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.23;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5201,511,0 chrIV 1511013 . C T 5490.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=26.02;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5490,550,0 chrIV 1511041 . C T 5055.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.4988;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=24.19;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5055,526,0 chrIV 1511078 . C T 5664.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=25.06;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5664,574,0 chrIV 1511153 . C A 5040.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=15.7076;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.45;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:5040,505,0 chrIV 1511255 . T C 4951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=220;Dels=0.00;FS=9.786;HaplotypeScore=17.0312;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.659;QD=22.50;ReadPosRankSum=2.416;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:2,216:220:99:4951,517,0 chrIV 1511348 . C T 3932.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.6302;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.99;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:3932,400,0 chrIV 1511510 . G T 3049 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.8587;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.20;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3082,301,0 chrIV 1511659 . C T 3582.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3582,349,0 chrIV 1511886 . A G 3818.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.67;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3818,391,0 chrIV 1512312 . G A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3749,388,0 chrIV 1513649 . T C 2123 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.08;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2156,219,0 chrIV 1513839 . G T 3175 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.24;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3208,322,0 chrIV 1514235 . A G 3855.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=25.03;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3855,397,0 chrIV 1514258 . T C 4074.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=26.80;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4074,403,0 chrIV 1514370 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.72;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3172,313,0 chrIV 1514403 . A G 3209 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.13;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3242,325,0 chrIV 1514528 . T C 3472.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.91;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3472,355,0 chrIV 1514569 . A T 3315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=4.669;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.412;QD=26.31;ReadPosRankSum=1.705;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3315,334,0 chrIV 1514712 . T C 3631.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.87;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3631,364,0 chrIV 1514773 . A C 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.794;QD=22.96;ReadPosRankSum=1.706;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:3133,321,0 chrIV 1514828 . A T 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.415;QD=23.36;ReadPosRankSum=1.618;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2859,291,0 chrIV 1514885 . C T 2880 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=23.41;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2913,292,0 chrIV 1515083 . C T 3667.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4499;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.61;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3667,370,0 chrIV 1515183 . T C 4645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8759;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.140;QD=24.97;ReadPosRankSum=1.638;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4645,478,0 chrIV 1515216 . A G 4264.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.37;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4264,439,0 chrIV 1515303 . A T 4362.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=25.66;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4362,433,0 chrIV 1515420 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=168;Dels=0.00;FS=2.985;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.081;QD=24.17;ReadPosRankSum=2.420;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:4060,412,0 chrIV 1515455 . C T 3862.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3862,385,0 chrIV 1515582 . T C 2620 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.60;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2653,276,0 chrIV 1515661 . A G 4082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=166;Dels=0.00;FS=2.595;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.067;QD=24.59;ReadPosRankSum=2.420;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:4082,415,0 chrIV 1515708 . T C 3876.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=25.50;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3876,408,0 chrIV 1515864 . G C 3579.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.5583;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.51;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3579,375,0 chrIV 1515946 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=20.34;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3166,330,0 chrIV 1515956 . G A 2673 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=17.36;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2706,285,0 chrIV 1515965 . G T 2820 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.4292;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=17.74;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2853,285,0 chrIV 1516038 . T G 4846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=208;Dels=0.00;FS=2.994;HaplotypeScore=14.0294;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=1.407;QD=23.30;ReadPosRankSum=2.390;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:2,203:208:99:4846,499,0 chrIV 1516083 . C T 4964.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=25.59;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4964,490,0 chrIV 1516137 . G A 4533.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.0171;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=24.37;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4533,466,0 chrIV 1516246 . T G 4815.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.5203;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=22.50;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4815,487,0 chrIV 1516250 . T G 4763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=207;Dels=0.00;FS=3.501;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=-0.202;QD=23.01;ReadPosRankSum=1.698;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4763,490,0 chrIV 1516301 . G A 3797.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.8273;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=19.98;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:3797,376,0 chrIV 1516312 . G A 3971.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=19.86;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3971,409,0 chrIV 1516441 . A G 6110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=241;Dels=0.00;FS=3.908;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-1.272;QD=25.35;ReadPosRankSum=1.660;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:6110,643,0 chrIV 1516642 . A G 144.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.255;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=34.7835;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;MQRankSum=0.657;QD=0.54;ReadPosRankSum=1.614;SB=-2.081e+02 GT:AD:DP:GQ:PL 1/1:1,29:267:21:177,21,0 chrIV 1516658 . T C 5022.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=20.67;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:5022,511,0 chrIV 1516666 . G A 4752.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=19.56;SB=-2.974e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:4752,478,0 chrIV 1516703 . C T 4150.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=19.67;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4150,421,0 chrIV 1516810 . T C 4759.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.7920;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.91;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4759,484,0 chrIV 1516853 . T G 3382.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.3967;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=23.99;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3382,348,0 chrIV 1516976 . G C 2925 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.03;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2958,301,0 chrIV 1517088 . T A 971 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=17.34;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1004,102,0 chrIV 1517095 . C A 993 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=16.55;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1026,105,0 chrIV 1517115 . C G 987 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=13.52;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1020,99,0 chrIV 1517124 . A G 1112 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=12.93;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1145,117,0 chrIV 1517334 . A G 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=147;Dels=0.00;FS=2.872;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-0.844;QD=22.79;ReadPosRankSum=2.416;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3350,343,0 chrIV 1517708 . A C 1624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=4.228;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;MQRankSum=-1.116;QD=18.04;ReadPosRankSum=1.694;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1657,177,0 chrIV 1517709 . A G 1676 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=18.62;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1709,180,0 chrIV 1517744 . T C 1165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;MQRankSum=-1.516;QD=14.56;ReadPosRankSum=1.689;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1198,132,0 chrIV 1517745 . C T 1128 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;QD=14.10;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1161,132,0 chrIV 1517758 . T C 1361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;MQRankSum=-1.496;QD=15.47;ReadPosRankSum=1.614;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1394,141,0 chrIV 1517833 . A G 2021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.445;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.196;QD=24.06;ReadPosRankSum=1.691;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:2054,213,0 chrIV 1517934 . C A 3032 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=18.2640;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=24.26;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3065,304,0 chrIV 1517966 . A G 3195 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=24.20;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3228,334,0 chrIV 1518137 . A G 4640.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.4476;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.92;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4640,478,0 chrIV 1518269 . A G 4240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=171;Dels=0.00;FS=8.003;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;MQRankSum=-1.331;QD=24.80;ReadPosRankSum=3.408;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:4,166:171:99:4240,430,0 chrIV 1518332 . T C 4923.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.13;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,228:233:99:4923,493,0 chrIV 1518334 . C A 4748.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.64;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4748,487,0 chrIV 1518445 . A C 613 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.26;MQ0=0;QD=11.79;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:66:646,66,0 chrIV 1518694 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=25.55;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:3347,334,0 chrIV 1518926 . T A 1642 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=6.9660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.78;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1675,180,0 chrIV 1518997 . C G 2265 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.2048;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.17;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2298,234,0 chrIV 1519082 . G A 1712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=2.895;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;MQRankSum=-0.297;QD=19.68;ReadPosRankSum=2.082;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1745,195,0 chrIV 1519083 . A G 1688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=86;Dels=0.00;FS=2.926;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;MQRankSum=-0.681;QD=19.63;ReadPosRankSum=2.247;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:2,83:86:99:1721,195,0 chrIV 1519105 . G A 1998 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=22.97;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2031,204,0 chrIV 1519177 . C A 2343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0258;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=1.054;QD=23.91;ReadPosRankSum=0.518;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2376,246,0 chrIV 1519267 . T C 2063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.8048;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;MQRankSum=-0.678;QD=22.18;ReadPosRankSum=1.694;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2096,213,0 chrIV 1519279 . C T 2052 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=21.60;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2085,216,0 chrIV 1519310 . T G 1469 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=18.14;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1502,156,0 chrIV 1519313 . C G 1383 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;QD=17.29;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1416,150,0 chrIV 1519316 . C A 1393 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=17.63;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1426,147,0 chrIV 1519393 . G A 1428 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;QD=21.97;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1461,150,0 chrIV 1519398 . G A 1389 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=22.05;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1422,147,0 chrIV 1519407 . T C 1384 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;QD=20.97;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1417,153,0 chrIV 1519429 . G A 1409 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=21.35;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1442,147,0 chrIV 1519461 . A G 1340 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=18.11;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1373,144,0 chrIV 1519463 . A G 1400 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=18.92;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1433,147,0 chrIV 1519512 . T C 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;DP=105;Dels=0.00;FS=2.727;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-0.527;QD=22.43;ReadPosRankSum=2.356;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2388,243,0 chrIV 1519563 . G A 2556 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=26.08;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2589,261,0 chrIV 1519598 . T A 1565 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;QD=17.20;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1598,159,0 chrIV 1519615 . C T 654 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.05;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.69;MQ0=0;QD=7.88;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:81:687,81,0 chrIV 1519618 . G A 438 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;QD=5.41;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,77:81:60:471,60,0 chrIV 1519621 . T A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.059;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=37.75;MQ0=0;MQRankSum=-1.479;QD=0.14;ReadPosRankSum=4.364;SB=-5.958e+02 GT:AD:DP:GQ:PL 1/1:8,78:86:6:43,6,0 chrIV 1519850 . T C 4402.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=24.87;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4402,445,0 chrIV 1520098 . G C 4380.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.4639;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.17;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,184:189:99:4380,448,0 chrIV 1520148 . T A 5182.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=215;Dels=0.00;FS=3.071;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.636;QD=24.10;ReadPosRankSum=1.684;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:5182,523,0 chrIV 1520273 . G A 4219.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=23.18;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4219,433,0 chrIV 1520281 . C T 4203.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=23.09;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4203,424,0 chrIV 1520285 . C T 4171.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=23.30;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4171,415,0 chrIV 1520813 . C T 3829.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.23;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3829,376,0 chrIV 1520843 . G A 3699.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=25.34;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3699,364,0 chrIV 1520921 . A G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.702;DP=127;Dels=0.00;FS=11.577;HaplotypeScore=22.5840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.089;QD=23.76;ReadPosRankSum=2.944;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:3,122:127:99:3051,310,0 chrIV 1521015 . T C 3031 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.50;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3064,312,0 chrIV 1521171 . C T 3838.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.8528;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.45;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3838,385,0 chrIV 1521256 . C T 3938.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=24.77;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3938,397,0 chrIV 1521296 . A G 3986.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=24.76;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3986,400,0 chrIV 1521315 . C T 4172.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=24.98;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4172,421,0 chrIV 1521369 . A C 4793.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.8015;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=24.83;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4793,493,0 chrIV 1521435 . A T 5785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=216;Dels=0.00;FS=9.829;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-0.335;QD=26.78;ReadPosRankSum=2.336;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:5785,574,0 chrIV 1521557 . T C 4840.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=193.0234;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=19.92;SB=-3.227e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:4840,496,0 chrIV 1521582 . A C 3824.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=17.38;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:3824,388,0 chrIV 1521594 . T C 3574.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=17.27;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3574,364,0 chrIV 1521638 . C T 4177.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.1809;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=21.20;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4177,450,0 chrIV 1521711 . T C 5765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=225;Dels=0.00;FS=4.279;HaplotypeScore=13.0047;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=-0.239;QD=25.62;ReadPosRankSum=1.701;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5765,580,0 chrIV 1521747 . C A 5329.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=25.02;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5329,544,0 chrIV 1521834 . A G 688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;MQRankSum=-0.976;QD=12.51;ReadPosRankSum=1.669;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:75:721,75,0 chrIV 1521941 . A G 2580 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=21.15;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2613,270,0 chrIV 1522055 . T C 2636 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=23.54;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2669,265,0 chrIV 1522245 . A G 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=139;Dels=0.00;FS=2.720;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=0.258;QD=25.48;ReadPosRankSum=2.414;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:3542,367,0 chrIV 1522332 . T C 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=118;Dels=0.00;FS=5.278;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=0;MQRankSum=-2.078;QD=23.19;ReadPosRankSum=2.733;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:3,114:118:99:2769,280,0 chrIV 1522334 . A G 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=117;Dels=0.00;FS=5.302;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.95;MQ0=0;MQRankSum=-2.338;QD=22.79;ReadPosRankSum=3.336;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:4,112:117:99:2699,279,0 chrIV 1522398 . G A 1236 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.76;MQ0=0;QD=19.62;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1269,123,0 chrIV 1522415 . G A 914 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.75;MQ0=0;QD=17.92;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:947,96,0 chrIV 1522423 . C T 923 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=49.5217;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;QD=17.09;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:956,102,0 chrIV 1522501 . C T 1098 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;QD=16.64;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1131,111,0 chrIV 1522507 . T G 1136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.309;DP=73;Dels=0.00;FS=8.118;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;MQRankSum=0.982;QD=15.56;ReadPosRankSum=3.042;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:4,69:73:99:1169,120,0 chrIV 1522527 . T G 222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=84;Dels=0.00;FS=10.371;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;MQRankSum=-1.305;QD=2.64;ReadPosRankSum=2.916;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:4,80:84:33:255,33,0 chrIV 1522539 . T C 1465 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=0;QD=18.54;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1498,156,0 chrIV 1522544 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.15;MQ0=0;QD=18.46;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1547,153,0 chrIV 1522592 . A T 1567 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.28;MQ0=0;QD=13.63;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1600,165,0 chrIV 1522616 . C T 1235 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=10.38;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1268,141,0 chrIV 1522631 . G C 1237 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.880;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=33.35;MQ0=0;MQRankSum=-1.237;QD=9.82;ReadPosRankSum=1.485;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:1270,144,0 chrIV 1522634 . C T 1289 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=10.40;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1322,147,0 chrIV 1522636 . G A 1242 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=0;QD=10.10;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1275,141,0 chrIV 1522700 . G A 982 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;QD=10.12;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1015,111,0 chrIV 1522713 . T G 685 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.9891;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=9.38;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,68:73:87:718,87,0 chrIV 1522714 . G T 685 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=10.07;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:87:718,87,0 chrIV 1522717 . C G 740 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=10.88;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:87:773,87,0 chrIV 1522718 . G A 772 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=11.19;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:90:805,90,0 chrIV 1522722 . T C 923 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;MQRankSum=-1.732;QD=10.99;ReadPosRankSum=1.608;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:956,102,0 chrIV 1522755 . T C 2167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.6242;MLEAC=2;MLEAF=1.00;MQ=35.61;MQ0=0;MQRankSum=-1.122;QD=15.26;ReadPosRankSum=1.708;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2200,231,0 chrIV 1522807 . C T 5288.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=0;QD=22.70;SB=-3.278e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5288,535,0 chrIV 1522830 . T C 5763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=247;Dels=0.00;FS=3.012;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;MQRankSum=-0.939;QD=23.33;ReadPosRankSum=2.430;SB=-3.193e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:5763,589,0 chrIV 1522862 . G A 4657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=227;Dels=0.00;FS=4.096;HaplotypeScore=8.6233;MLEAC=2;MLEAF=1.00;MQ=41.98;MQ0=0;MQRankSum=0.598;QD=20.52;ReadPosRankSum=-1.334;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4657,460,0 chrIV 1522920 . G A 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.256;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.7761;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=0;MQRankSum=-1.699;QD=16.08;ReadPosRankSum=2.949;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:3,174:179:99:2911,303,0 chrIV 1522934 . G T 3007 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.72;MQ0=0;QD=15.03;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3040,312,0 chrIV 1522967 . G A 2588 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=0;QD=12.09;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:2621,273,0 chrIV 1522973 . C T 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.3929;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;MQRankSum=1.270;QD=11.91;ReadPosRankSum=0.495;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:2545,279,0 chrIV 1522982 . T C 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=211;Dels=0.00;FS=2.996;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=0;MQRankSum=-0.960;QD=12.40;ReadPosRankSum=2.368;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:2650,276,0 chrIV 1522984 . T C 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=214;Dels=0.00;FS=2.993;HaplotypeScore=5.6512;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;MQRankSum=-1.084;QD=11.93;ReadPosRankSum=2.427;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:2586,270,0 chrIV 1523060 . G C 4328.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.9327;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=20.22;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4328,451,0 chrIV 1523071 . A G 4514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;MQRankSum=-0.313;QD=21.70;ReadPosRankSum=1.715;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,204:208:99:4514,466,0 chrIV 1523096 . A G 4285.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.7067;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;QD=21.00;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4285,447,0 chrIV 1523171 . G C 4026.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=35.78;MQ0=0;QD=20.65;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4026,412,0 chrIV 1523192 . G C 4420.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=21.56;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4420,451,0 chrIV 1523232 . A C 4130.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.159;DP=198;Dels=0.00;FS=7.694;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=9;MQRankSum=2.093;QD=20.86;ReadPosRankSum=1.380;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:5,188:198:99:4130,395,0 chrIV 1523272 . C T 2124 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.765;DP=233;Dels=0.00;FS=2.565;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=22.12;MQ0=48;MQRankSum=0.765;QD=9.12;ReadPosRankSum=-2.088;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:12,220:233:99:2157,188,0 chrIV 1523305 . C T 913 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.522;DP=204;Dels=0.00;FS=56.573;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=15.49;MQ0=56;MQRankSum=1.869;QD=4.48;ReadPosRankSum=-1.467;SB=-6.522e-03 GT:AD:DP:GQ:PL 1/1:54,149:204:65:946,65,0 chrIV 1523350 . T G 935 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.36;MQ0=21;QD=10.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,82:90:99:968,102,0 chrIV 1523425 . G T 1468 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.054;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.20;MQ0=10;MQRankSum=3.731;QD=14.98;ReadPosRankSum=1.370;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:15,83:98:99:1501,156,0 chrIV 1523440 . T C 1074 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.076;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=21;MQRankSum=2.719;QD=8.01;ReadPosRankSum=-0.577;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:28,105:134:99:1107,123,0 chrIV 1523491 . T C 34.14 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.780;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=8.32;MQ0=63;MQRankSum=5.802;QD=0.22;ReadPosRankSum=-4.317;SB=0.830 GT:AD:DP:GQ:PL 0/1:136,18:154:12:64,0,12 chrIV 1523861 . T G 54.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.72;MQ0=2;QD=6.81;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:87,12,0 chrIV 1523888 . A G 54.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.65;MQ0=1;QD=6.81;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:87,12,0 chrIV 1523913 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.38;MQ0=0;QD=3.01;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:43,6,0 chrIV 1524117 . C G 198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.090;DP=35;Dels=0.00;FS=2.516;HaplotypeScore=3.7820;MLEAC=2;MLEAF=1.00;MQ=15.80;MQ0=3;MQRankSum=2.439;QD=5.66;ReadPosRankSum=2.335;SB=-1.219e+02 GT:AD:DP:GQ:PL 1/1:5,30:35:30:231,30,0 chrIV 1524126 . G A 184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.960;DP=33;Dels=0.00;FS=5.057;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.06;MQ0=2;MQRankSum=2.497;QD=5.58;ReadPosRankSum=-1.208;SB=-1.299e+02 GT:AD:DP:GQ:PL 1/1:5,28:33:27:217,27,0 chrIV 1524141 . G A 73.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.157;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.57;MQ0=1;MQRankSum=1.620;QD=3.68;ReadPosRankSum=-3.287;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:5,15:20:12:106,12,0 chrIV 1524154 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.98;MQ0=1;QD=1.20;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:6:43,6,0 chrIV 1524292 . C A 39.97 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.48;MQ0=0;QD=2.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:9:72,9,0 chrIV 1524299 . C T 112.13 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.58;MQ0=1;QD=5.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:18:145,18,0 chrIV 1524311 . T A,C 107.10 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=17.56;MQ0=1;QD=3.97;SB=-6.851e-02 GT:AD:DP:GQ:PL 1/2:0,16,11:27:44:167,108,99,59,0,44 chrIV 1524312 . T C 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;DP=27;Dels=0.00;FS=18.524;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.56;MQ0=1;MQRankSum=-1.871;QD=0.49;ReadPosRankSum=3.716;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,16:27:43:43,0,100 chrIV 1524313 . C T 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;DP=28;Dels=0.00;FS=17.258;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.58;MQ0=1;MQRankSum=-1.357;QD=0.37;ReadPosRankSum=3.824;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:12,16:28:40:40,0,120 chrIV 1524321 . G A 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.944;DP=36;Dels=0.00;FS=20.373;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.86;MQ0=4;MQRankSum=-1.309;QD=0.42;ReadPosRankSum=1.151;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:15,21:36:45:45,0,117 chrIV 1524322 . T G 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;DP=37;Dels=0.00;FS=24.766;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.72;MQ0=4;MQRankSum=-1.516;QD=0.41;ReadPosRankSum=1.291;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,21:37:45:45,0,118 chrIV 1524329 . G A 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.357;DP=41;Dels=0.00;FS=40.364;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=16.68;MQ0=4;MQRankSum=-1.272;QD=0.35;ReadPosRankSum=0.966;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,21:41:44:44,0,141 chrIV 1524351 . G T 274.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830;DP=64;Dels=0.00;FS=22.769;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.94;MQ0=4;MQRankSum=0.745;QD=4.28;ReadPosRankSum=-0.729;SB=-9.903e+01 GT:AD:DP:GQ:PL 0/1:20,44:64:20:304,0,20 chrIV 1524367 . G T 310.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.485;DP=70;Dels=0.00;FS=1.294;HaplotypeScore=8.4842;MLEAC=1;MLEAF=0.500;MQ=17.27;MQ0=4;MQRankSum=-0.410;QD=4.43;ReadPosRankSum=0.770;SB=-9.102e+01 GT:AD:DP:GQ:PL 0/1:18,52:70:23:340,0,23 chrIV 1524407 . A T 153.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;DP=62;Dels=0.00;FS=31.335;HaplotypeScore=3.3239;MLEAC=1;MLEAF=0.500;MQ=18.86;MQ0=3;MQRankSum=-2.484;QD=2.47;ReadPosRankSum=1.795;SB=-5.768e+01 GT:AD:DP:GQ:PL 0/1:22,40:62:99:183,0,269 chrIV 1524453 . C G 267 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=15;Dels=0.00;FS=5.898;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=24.89;MQ0=0;MQRankSum=-0.255;QD=17.80;ReadPosRankSum=0.255;SB=0.781 GT:AD:DP:GQ:PL 1/1:2,13:15:33:300,33,0 chrIV 1524458 . G A 277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.783;DP=15;Dels=0.00;FS=4.301;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=24.89;MQ0=0;MQRankSum=1.104;QD=18.47;ReadPosRankSum=0.085;SB=-2.682e+01 GT:AD:DP:GQ:PL 1/1:2,13:15:33:310,33,0 chrIV 1524468 . T A 214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.493;DP=13;Dels=0.00;FS=3.736;HaplotypeScore=2.8735;MLEAC=2;MLEAF=1.00;MQ=24.20;MQ0=0;MQRankSum=-0.099;QD=16.46;ReadPosRankSum=-0.691;SB=-2.804e+01 GT:AD:DP:GQ:PL 1/1:2,11:13:27:247,27,0 chrIV 1524477 . A G 89.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.733;DP=10;Dels=0.00;FS=2.730;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=22.56;MQ0=0;MQRankSum=-0.480;QD=8.93;ReadPosRankSum=-0.480;SB=-2.675e+01 GT:AD:DP:GQ:PL 1/1:2,8:10:15:122,15,0 chrIV 1524489 . G A 65.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;DP=14;Dels=0.00;FS=11.228;HaplotypeScore=1.7845;MLEAC=1;MLEAF=0.500;MQ=22.42;MQ0=0;MQRankSum=0.696;QD=4.64;ReadPosRankSum=-1.256;SB=0.101 GT:AD:DP:GQ:PL 0/1:8,5:14:71:95,0,71 chrIV 1524506 . G T 459 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=0;QD=20.86;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:51:492,51,0 chrIV 1524526 . T G 451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=25.16;MQ0=0;MQRankSum=1.148;QD=20.50;ReadPosRankSum=2.679;SB=-9.088e+01 GT:AD:DP:GQ:PL 1/1:3,19:22:35:484,35,0 chrIV 1524542 . C T 539 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.51;MQ0=0;QD=19.96;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:60:572,60,0 chrIV 1524558 . T G 424.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.354;DP=27;Dels=0.00;FS=5.444;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.51;MQ0=0;MQRankSum=3.053;QD=15.74;ReadPosRankSum=0.876;SB=-9.121e+01 GT:AD:DP:GQ:PL 1/1:8,19:27:9:457,9,0 chrIV 1524595 . G A 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.73;MQ0=0;QD=3.15;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:73,9,0 chrIV 1524599 . T C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.21;MQ0=0;QD=1.80;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:6:51,6,0 chrIV 1524601 . C T 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.21;MQ0=0;QD=1.89;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:6:52,6,0 chrIV 1524606 . A G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.21;MQ0=0;QD=1.80;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:6:51,6,0 chrIV 1524608 . A G 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=18.21;MQ0=0;QD=1.71;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:6:50,6,0 chrIV 1524611 . G A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=18.21;MQ0=0;QD=1.80;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:6:51,6,0 chrIV 1524653 . G A 156.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=4.7856;MLEAC=2;MLEAF=1.00;MQ=21.30;MQ0=1;MQRankSum=1.826;QD=6.50;ReadPosRankSum=0.634;SB=-1.386e+02 GT:AD:DP:GQ:PL 1/1:6,18:24:24:189,24,0 chrIV 1524693 . T G 84.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103;DP=21;Dels=0.00;FS=31.412;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.38;MQ0=1;MQRankSum=-1.113;QD=4.00;ReadPosRankSum=0.536;SB=-2.886e+00 GT:AD:DP:GQ:PL 0/1:15,6:21:27:114,0,27 chrIV 1524698 . G A 84.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.186;DP=21;Dels=0.00;FS=26.641;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.54;MQ0=1;MQRankSum=-0.701;QD=4.00;ReadPosRankSum=0.454;SB=-2.888e+00 GT:AD:DP:GQ:PL 0/1:15,6:21:25:114,0,25 chrIV 1524707 . G A 117.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;DP=21;Dels=0.00;FS=29.612;HaplotypeScore=3.7089;MLEAC=1;MLEAF=0.500;MQ=20.92;MQ0=1;MQRankSum=-2.230;QD=5.57;ReadPosRankSum=-1.550;SB=0.506 GT:AD:DP:GQ:PL 0/1:10,11:21:20:147,0,20 chrIV 1524717 . A G 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;DP=21;Dels=0.00;FS=17.041;HaplotypeScore=3.7089;MLEAC=1;MLEAF=0.500;MQ=20.94;MQ0=1;MQRankSum=0.116;QD=1.43;ReadPosRankSum=2.430;SB=-1.898e+01 GT:AD:DP:GQ:PL 0/1:8,13:21:60:60,0,126 chrIV 1524736 . T C 75.79 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;DP=15;Dels=0.00;FS=2.963;HaplotypeScore=2.7355;MLEAC=1;MLEAF=0.500;MQ=20.42;MQ0=1;MQRankSum=-0.156;QD=5.05;ReadPosRankSum=-0.934;SB=-9.574e+01 GT:AD:DP:GQ:PL 0/1:4,11:15:4:105,0,4 chrIV 1524740 . C T 78.79 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=2.7355;MLEAC=1;MLEAF=0.500;MQ=22.00;MQ0=0;MQRankSum=0.510;QD=4.63;ReadPosRankSum=-1.531;SB=-1.012e+02 GT:AD:DP:GQ:PL 0/1:1,16:17:4:108,0,4 chrIV 1524743 . T C 96.46 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=2.7355;MLEAC=1;MLEAF=0.500;MQ=22.00;MQ0=0;MQRankSum=0.224;QD=5.67;ReadPosRankSum=-2.311;SB=-9.367e+01 GT:AD:DP:GQ:PL 0/1:2,15:17:1:125,0,1 chrIV 1524751 . C T 135.06 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=0;QD=7.50;SB=-9.507e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:21:168,21,0 chrIV 1524767 . T C 122.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.057;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=22.69;MQ0=0;MQRankSum=1.542;QD=5.57;ReadPosRankSum=0.857;SB=-9.636e+01 GT:AD:DP:GQ:PL 1/1:2,20:22:2:152,2,0 chrIV 1524776 . G T 124.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.628;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=22.69;MQ0=0;MQRankSum=0.057;QD=5.66;ReadPosRankSum=1.770;SB=-9.991e+01 GT:AD:DP:GQ:PL 1/1:2,20:22:2:154,2,0 chrIV 1524779 . T A 162.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.876;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=22.33;MQ0=0;MQRankSum=0.914;QD=6.23;ReadPosRankSum=2.261;SB=-9.604e+01 GT:AD:DP:GQ:PL 1/1:2,24:26:24:195,24,0 chrIV 1524783 . A G 120.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.887;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.04;MQ0=0;MQRankSum=2.122;QD=4.46;ReadPosRankSum=1.890;SB=-9.934e+01 GT:AD:DP:GQ:PL 1/1:3,24:27:2:150,2,0 chrIV 1524789 . T C 120.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.504;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.04;MQ0=0;MQRankSum=1.042;QD=4.46;ReadPosRankSum=2.353;SB=-7.450e+01 GT:AD:DP:GQ:PL 1/1:3,24:27:2:150,2,0 chrIV 1524791 . G A 127.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.21;MQ0=0;MQRankSum=1.010;QD=4.91;ReadPosRankSum=1.780;SB=-7.655e+01 GT:AD:DP:GQ:PL 1/1:2,24:26:2:157,2,0 chrIV 1524795 . C G 88.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.432;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.80;MQ0=0;MQRankSum=1.432;QD=3.84;ReadPosRankSum=0.678;SB=-5.127e+01 GT:AD:DP:GQ:PL 1/1:1,22:23:15:121,15,0 chrIV 1524796 . G A 92.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.80;MQ0=0;MQRankSum=1.432;QD=4.01;ReadPosRankSum=0.226;SB=-5.127e+01 GT:AD:DP:GQ:PL 1/1:1,22:23:15:125,15,0 chrIV 1524798 . C T 117.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.829;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.80;MQ0=0;MQRankSum=1.432;QD=5.09;ReadPosRankSum=0.075;SB=-5.014e+01 GT:AD:DP:GQ:PL 1/1:1,22:23:18:150,18,0 chrIV 1524838 . G T 62.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.819;DP=20;Dels=0.00;FS=15.006;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=18.38;MQ0=0;MQRankSum=2.205;QD=3.13;ReadPosRankSum=-0.567;SB=-4.352e+01 GT:AD:DP:GQ:PL 1/1:2,18:20:12:95,12,0 chrIV 1524864 . G A 23.24 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;DP=20;Dels=0.00;FS=31.412;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.61;MQ0=0;MQRankSum=0.949;QD=1.16;ReadPosRankSum=0.619;SB=-3.093e+00 GT:AD:DP:GQ:PL 0/1:14,6:20:10:53,0,10 chrIV 1524886 . T A 32.97 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=17.17;MQ0=0;QD=2.36;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:14:9:65,9,0 chrIV 1524974 . A G 462 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.21;MQ0=1;QD=14.90;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,30:31:60:495,60,0 chrIV 1525003 . G A 366.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.742;DP=51;Dels=0.00;FS=76.878;HaplotypeScore=4.4820;MLEAC=1;MLEAF=0.500;MQ=18.85;MQ0=6;MQRankSum=2.844;QD=7.18;ReadPosRankSum=5.099;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:22,25:51:99:396,0,177 chrIV 1525022 . A C 338.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.207;DP=53;Dels=0.00;FS=59.647;HaplotypeScore=3.6933;MLEAC=1;MLEAF=0.500;MQ=18.94;MQ0=6;MQRankSum=1.738;QD=6.38;ReadPosRankSum=1.226;SB=1.75 GT:AD:DP:GQ:PL 0/1:28,25:53:99:368,0,207 chrIV 1525024 . G A 337.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;DP=53;Dels=0.00;FS=59.647;HaplotypeScore=3.6933;MLEAC=1;MLEAF=0.500;MQ=18.94;MQ0=6;MQRankSum=2.590;QD=6.36;ReadPosRankSum=-0.394;SB=0.528 GT:AD:DP:GQ:PL 0/1:28,25:53:99:367,0,224 chrIV 1525043 . G A 152.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;DP=51;Dels=0.00;FS=62.169;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=19.01;MQ0=6;MQRankSum=-2.707;QD=2.98;ReadPosRankSum=5.196;SB=-1.821e+00 GT:AD:DP:GQ:PL 0/1:25,26:51:99:182,0,375 chrIV 1525062 . A G 242 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.317;DP=29;Dels=0.00;FS=24.266;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=17.84;MQ0=6;MQRankSum=-3.093;QD=8.34;ReadPosRankSum=3.317;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:5,24:29:36:275,36,0 chrIV 1525063 . G A 212 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.771;DP=24;Dels=0.00;FS=6.532;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.09;MQ0=6;MQRankSum=0.771;QD=8.83;ReadPosRankSum=0.385;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:2,22:24:33:245,33,0 chrIV 1525073 . G A 200 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.71;MQ0=4;QD=11.76;SB=-3.100e+01 GT:AD:DP:GQ:PL 1/1:1,16:17:30:233,30,0 chrIV 1525181 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.067;DP=9;Dels=0.00;FS=6.532;HaplotypeScore=6.4179;MLEAC=2;MLEAF=1.00;MQ=14.69;MQ0=0;MQRankSum=0.762;QD=1.34;ReadPosRankSum=-0.067;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:2,7:9:6:43,6,0 chrIV 1525187 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.69;MQ0=0;MQRankSum=0.751;QD=1.34;ReadPosRankSum=-0.751;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:1,8:9:6:43,6,0 chrIV 1525221 . G A 54.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.041;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=11.8002;MLEAC=2;MLEAF=1.00;MQ=15.30;MQ0=0;MQRankSum=0.752;QD=4.54;ReadPosRankSum=0.967;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:2,10:12:12:87,12,0 chrIV 1525264 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=9;Dels=0.00;FS=3.802;HaplotypeScore=3.8711;MLEAC=2;MLEAF=1.00;MQ=18.53;MQ0=0;MQRankSum=-0.762;QD=1.34;ReadPosRankSum=1.179;SB=2.69 GT:AD:DP:GQ:PL 1/1:2,7:9:6:43,6,0 chrIV 1525272 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.741;DP=10;Dels=0.00;FS=5.229;HaplotypeScore=3.8711;MLEAC=2;MLEAF=1.00;MQ=19.82;MQ0=0;MQRankSum=-1.741;QD=1.20;ReadPosRankSum=0.348;SB=-2.071e+01 GT:AD:DP:GQ:PL 1/1:1,9:10:6:43,6,0 chrIV 1525274 . T A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=2.9133;MLEAC=2;MLEAF=1.00;MQ=19.82;MQ0=0;QD=1.20;SB=-5.964e+01 GT:AD:DP:GQ:PL 1/1:0,9:10:6:43,6,0 chrIX 19718 . T C 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=4.260;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.55;MQ0=0;MQRankSum=-0.747;QD=4.12;ReadPosRankSum=0.747;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:1,7:8:9:65,9,0 chrIX 19739 . T C 104.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.38;MQ0=0;QD=11.57;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:137,18,0 chrIX 19748 . T C 103.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.38;MQ0=0;QD=11.46;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:136,18,0 chrIX 19760 . T C 99.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=4.393;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.72;MQ0=0;MQRankSum=-1.739;QD=9.01;ReadPosRankSum=1.423;SB=-6.707e+01 GT:AD:DP:GQ:PL 1/1:1,10:11:18:132,18,0 chrIX 19778 . T G 351 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.93;MQ0=1;QD=17.55;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:45:384,45,0 chrIX 19817 . A G 332 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=17;Dels=0.00;FS=12.041;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.45;MQ0=1;MQRankSum=-0.217;QD=19.53;ReadPosRankSum=1.519;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,16:17:42:365,42,0 chrIX 19822 . G A 354 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.35;MQ0=1;QD=22.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:42:387,42,0 chrIX 19834 . A G 338 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.35;MQ0=1;QD=21.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:42:371,42,0 chrIX 19867 . A T 108.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=15.47;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:141,15,0 chrIX 19951 . T C 155.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=10;Dels=0.00;FS=5.229;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.65;MQ0=0;MQRankSum=1.393;QD=15.51;ReadPosRankSum=1.393;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,9:10:21:188,21,0 chrIX 19960 . T C 192.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=5.119;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.88;MQ0=0;MQRankSum=0.668;QD=14.77;ReadPosRankSum=1.470;SB=-2.902e+01 GT:AD:DP:GQ:PL 1/1:1,12:13:24:225,24,0 chrIX 19966 . T C 193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=15;Dels=0.00;FS=3.979;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.65;MQ0=0;MQRankSum=1.042;QD=12.87;ReadPosRankSum=1.504;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:27:226,27,0 chrIX 19978 . A G 202.01 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=0;QD=11.22;SB=-9.902e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:27:235,27,0 chrIX 19984 . A G 212.01 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.62;MQ0=0;QD=11.16;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:27:245,27,0 chrIX 19993 . C G 234 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.11;MQ0=0;QD=10.64;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:30:267,30,0 chrIX 19997 . A G 241 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.24;MQ0=0;QD=10.48;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:30:274,30,0 chrIX 20011 . A G 239 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=0;QD=7.97;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:30:272,30,0 chrIX 20017 . C T 231 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.19;MQ0=1;QD=7.00;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:30:264,30,0 chrIX 20039 . A C 115.13 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.84;MQ0=1;QD=3.39;SB=-2.481e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:18:148,18,0 chrIX 20053 . A C 86.26 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.02;MQ0=1;QD=2.78;SB=-1.903e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:15:119,15,0 chrIX 20089 . T C 32.97 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.94;MQ0=1;QD=1.74;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:9:65,9,0 chrIX 20107 . G A 32.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.67;MQ0=0;QD=3.00;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:65,9,0 chrIX 20116 . G T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.17;MQ0=0;QD=1.72;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrIX 20194 . C T 85.26 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.52;MQ0=27;QD=1.71;SB=-5.230e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:15:118,15,0 chrIX 20197 . C T 130.06 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=12.13;MQ0=27;QD=2.32;SB=-5.381e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:21:163,21,0 chrIX 20242 . T C 1871 filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.83;MQ0=15;QD=11.84;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,158:158:99:1904,254,0 chrIX 20269 . T C 1799 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.73;MQ0=0;QD=14.17;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1832,248,0 chrIX 20272 . A C 1754 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.73;MQ0=0;QD=13.81;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1787,239,0 chrIX 20299 . A G 1137 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.49;MQ0=0;QD=13.54;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1170,161,0 chrIX 20320 . G C 140.03 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.22;MQ0=0;QD=12.73;SB=-4.297e+01 GT:AD:DP:GQ:PL 1/1:0,10:11:24:173,24,0 chrIX 20376 . C T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.70;MQ0=0;QD=3.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrIX 20377 . A C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.70;MQ0=0;QD=3.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrIX 20386 . C T 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.87;MQ0=0;QD=2.87;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:12:87,12,0 chrIX 20389 . T C 54.51 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.83;MQ0=0;QD=2.73;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:87,12,0 chrIX 20398 . G A 124.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.15;MQ0=0;QD=4.28;SB=-7.442e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:21:157,21,0 chrIX 20401 . A C 124.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.15;MQ0=0;QD=4.28;SB=-7.442e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:21:157,21,0 chrIX 20404 . T C 124.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.15;MQ0=0;QD=4.28;SB=-7.442e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:21:157,21,0 chrIX 20407 . A G 125.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.15;MQ0=0;QD=4.31;SB=-7.442e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:21:158,21,0 chrIX 20408 . A C 124.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.15;MQ0=0;QD=4.28;SB=-7.442e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:21:157,21,0 chrIX 20431 . A G 559 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.29;MQ0=0;QD=7.26;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:78:592,78,0 chrIX 20443 . A G 718 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.34;MQ0=0;QD=7.89;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,91:91:98:751,98,0 chrIX 20461 . A G 797 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.43;MQ0=0;QD=7.59;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,105:105:99:830,110,0 chrIX 20464 . G A 782 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.47;MQ0=0;QD=7.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:815,107,0 chrIX 20470 . T C 753 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.53;MQ0=0;QD=7.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:786,104,0 chrIX 20479 . T G 776 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.60;MQ0=0;QD=8.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:809,107,0 chrIX 20482 . T C 771 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.46;MQ0=0;QD=8.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:804,107,0 chrIX 20494 . A G 708 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.45;MQ0=0;QD=8.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:98:741,98,0 chrIX 20497 . C T 711 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.47;MQ0=0;QD=9.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,76:76:98:744,98,0 chrIX 20515 . A G 544 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.58;MQ0=0;MQRankSum=-1.674;QD=9.22;ReadPosRankSum=1.674;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,58:59:78:577,78,0 chrIX 20518 . C G 362 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.48;MQ0=0;QD=7.24;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:54:395,54,0 chrIX 20539 . C T 140.03 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.39;MQ0=0;QD=7.37;SB=-3.987e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:24:173,24,0 chrIX 21567 . T C 280 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.54;MQ0=30;QD=5.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,52:53:36:313,36,0 chrIX 21741 . A G 72.51 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.94;MQ0=5;QD=7.25;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:105,12,0 chrIX 21742 . A G 73.51 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.87;MQ0=6;QD=6.68;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:106,12,0 chrIX 21769 . A G 746 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.53;MQ0=15;QD=14.63;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:90:779,90,0 chrIX 21867 . C T 238 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=12.14;MQ0=81;QD=2.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,97:98:30:271,30,0 chrIX 22039 . C G 284 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.76;MQ0=36;QD=4.90;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:36:317,36,0 chrIX 22109 . T A 480 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=21.2699;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=12;QD=12.00;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:57:513,57,0 chrIX 23552 . G A 59.51 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.41;MQ0=2;QD=1.49;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:2,38:40:12:92,12,0 chrIX 23584 . A G 265 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.50;MQ0=0;QD=3.19;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:39:298,39,0 chrIX 23605 . G A 284 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.90;MQ0=0;QD=3.23;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,88:88:42:317,42,0 chrIX 23776 . G A 123.13 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;QD=2.37;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,52:52:18:156,18,0 chrIX 23788 . A G 374 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=4.99;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:48:407,48,0 chrIX 23803 . G A 538 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=0;QD=4.72;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,114:114:63:571,63,0 chrIX 23806 . T A 489 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=4.14;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,118:118:63:522,63,0 chrIX 23812 . G A 570 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;QD=4.32;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,127:132:72:603,72,0 chrIX 23818 . G A 859 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=34.38;MQ0=0;QD=5.84;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,145:147:99:892,105,0 chrIX 24157 . G T 7047.01 SnpCluster AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=5.3443;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=22.30;SB=-4.149e+03 GT:AD:DP:GQ:PL 1/1:0,315:316:99:7047,763,0 chrIX 24160 . A C 6414.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=304;Dels=0.00;FS=6.059;HaplotypeScore=2.7736;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=0.706;QD=21.10;ReadPosRankSum=2.891;SB=-3.933e+03 GT:AD:DP:GQ:PL 1/1:3,301:304:99:6414,714,0 chrIX 24163 . G A 6257.01 SnpCluster AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=4.2913;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=21.58;SB=-3.759e+03 GT:AD:DP:GQ:PL 1/1:0,290:290:99:6257,679,0 chrIX 24196 . G T 314.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.146;DP=235;Dels=0.00;FS=3.879;HaplotypeScore=12.8112;MLEAC=1;MLEAF=0.500;MQ=48.77;MQ0=0;MQRankSum=-4.632;QD=1.34;ReadPosRankSum=-8.727;SB=-5.110e+02 GT:AD:DP:GQ:PL 0/1:152,82:235:99:344,0,2507 chrIX 24199 . A C 501.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.163;DP=231;Dels=0.00;FS=3.819;HaplotypeScore=15.0678;MLEAC=1;MLEAF=0.500;MQ=48.43;MQ0=0;MQRankSum=-5.456;QD=2.17;ReadPosRankSum=-6.338;SB=-6.750e+02 GT:AD:DP:GQ:PL 0/1:141,90:231:99:531,0,2251 chrIX 24202 . G A 657.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.754;DP=236;Dels=0.00;FS=7.245;HaplotypeScore=18.4272;MLEAC=1;MLEAF=0.500;MQ=48.10;MQ0=0;MQRankSum=-3.095;QD=2.78;ReadPosRankSum=-4.624;SB=-7.400e+02 GT:AD:DP:GQ:PL 0/1:128,106:236:99:687,0,2016 chrIX 24211 . G A 1336.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.835;DP=251;Dels=0.00;FS=4.572;HaplotypeScore=31.6338;MLEAC=1;MLEAF=0.500;MQ=48.33;MQ0=0;MQRankSum=0.615;QD=5.32;ReadPosRankSum=4.056;SB=-1.190e+03 GT:AD:DP:GQ:PL 0/1:89,159:251:99:1366,0,1036 chrIX 24220 . G A 259.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;DP=244;Dels=0.00;FS=1.229;HaplotypeScore=24.0751;MLEAC=1;MLEAF=0.500;MQ=48.77;MQ0=0;MQRankSum=-3.548;QD=1.06;ReadPosRankSum=-10.205;SB=-1.770e+02 GT:AD:DP:GQ:PL 0/1:189,53:244:99:289,0,2355 chrIX 24816 . A G 5329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.275;DP=238;Dels=0.00;FS=8.325;HaplotypeScore=19.3442;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.137;QD=22.39;ReadPosRankSum=3.334;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:4,231:238:99:5329,579,0 chrIX 25066 . A G 6427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.110;DP=283;Dels=0.00;FS=14.407;HaplotypeScore=25.8849;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-1.801;QD=22.71;ReadPosRankSum=2.947;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:3,279:283:99:6427,660,0 chrIX 25228 . G A 6729.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=14.4610;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=24.65;SB=-3.496e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:6729,730,0 chrIX 25278 . C A 5908.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=22.72;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5908,633,0 chrIX 25331 . C A 1626 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.21;MQ0=0;QD=14.78;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1659,183,0 chrIX 25332 . T C 1581 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.59;MQ0=0;QD=15.06;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1614,177,0 chrIX 25334 . C T 1600 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=0;QD=16.16;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1633,174,0 chrIX 25341 . C T 314.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.328;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-1.062;QD=6.98;ReadPosRankSum=5.699;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,25:45:99:344,0,173 chrIX 25342 . G A 292.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.311;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=1.114;QD=6.08;ReadPosRankSum=5.923;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,25:48:99:322,0,226 chrIX 25345 . T G 288.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.735;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.083;QD=6.00;ReadPosRankSum=5.923;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,25:48:99:318,0,256 chrIX 25349 . A G 221.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.435;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.227;QD=4.60;ReadPosRankSum=-5.944;SB=2.99 GT:AD:DP:GQ:PL 1/1:25,23:48:27:254,27,0 chrIX 25357 . G A 873 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=31.84;MQ0=0;QD=14.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:906,102,0 chrIX 25358 . C G 147.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.112;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=31.84;MQ0=0;MQRankSum=-0.817;QD=2.37;ReadPosRankSum=4.333;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,22:62:99:177,0,527 chrIX 25359 . T G 172.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.871;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=31.84;MQ0=0;MQRankSum=-0.554;QD=2.77;ReadPosRankSum=5.450;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,23:62:99:202,0,502 chrIX 25361 . C A 802 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=0;QD=12.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:63:93:835,93,0 chrIX 25362 . C A 176.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.428;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=1;MLEAF=0.500;MQ=32.28;MQ0=0;MQRankSum=-0.420;QD=2.75;ReadPosRankSum=6.590;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,23:64:99:206,0,405 chrIX 25363 . A T 160.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=1;MLEAF=0.500;MQ=34.01;MQ0=0;MQRankSum=-2.291;QD=2.39;ReadPosRankSum=6.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,23:67:99:190,0,514 chrIX 25376 . C T 1706 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=40.42;MQ0=0;QD=12.92;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1739,189,0 chrIX 25392 . C A 720.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.246;DP=179;Dels=0.00;FS=48.288;HaplotypeScore=6.8138;MLEAC=1;MLEAF=0.500;MQ=45.03;MQ0=0;MQRankSum=-6.335;QD=4.02;ReadPosRankSum=4.051;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,88:179:99:750,0,1439 chrIX 25393 . T A 848.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.435;DP=182;Dels=0.00;FS=54.397;HaplotypeScore=8.7920;MLEAC=1;MLEAF=0.500;MQ=44.94;MQ0=0;MQRankSum=-5.872;QD=4.66;ReadPosRankSum=4.143;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,88:182:99:878,0,1421 chrIX 25468 . T A 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;DP=128;Dels=0.00;FS=1.694;HaplotypeScore=19.6174;MLEAC=1;MLEAF=0.500;MQ=47.58;MQ0=2;MQRankSum=-2.665;QD=0.11;ReadPosRankSum=-4.970;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:105,21:128:44:44,0,1718 chrIX 25498 . T G 832 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=35.55;MQ0=2;QD=16.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:96:865,96,0 chrIX 25509 . C T 311.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.085;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=1;MLEAF=0.500;MQ=29.01;MQ0=2;MQRankSum=-0.207;QD=7.78;ReadPosRankSum=1.608;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,22:40:99:341,0,274 chrIX 25510 . T A 332.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.260;DP=40;Dels=0.00;FS=3.245;HaplotypeScore=2.3983;MLEAC=1;MLEAF=0.500;MQ=26.52;MQ0=2;MQRankSum=-1.418;QD=8.30;ReadPosRankSum=1.973;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,22:40:99:362,0,284 chrIX 25513 . A G 840 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=26.75;MQ0=2;QD=19.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:44:99:873,99,0 chrIX 25560 . C A 383.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.440;DP=47;Dels=0.00;FS=47.475;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=35.12;MQ0=1;MQRankSum=-2.100;QD=8.15;ReadPosRankSum=0.297;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,24:47:99:413,0,439 chrIX 25561 . T A 368.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;DP=49;Dels=0.00;FS=40.530;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=34.48;MQ0=1;MQRankSum=-1.371;QD=7.51;ReadPosRankSum=0.588;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,24:49:99:398,0,458 chrIX 25592 . G A 147.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;DP=46;Dels=0.00;FS=49.089;HaplotypeScore=30.0293;MLEAC=1;MLEAF=0.500;MQ=34.12;MQ0=1;MQRankSum=-1.587;QD=3.20;ReadPosRankSum=-3.986;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,20:46:99:177,0,455 chrIX 25593 . C T 172.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091;DP=46;Dels=0.00;FS=77.220;HaplotypeScore=38.8148;MLEAC=1;MLEAF=0.500;MQ=34.12;MQ0=1;MQRankSum=0.159;QD=3.74;ReadPosRankSum=1.017;SB=-1.249e+00 GT:AD:DP:GQ:PL 0/1:31,15:46:99:202,0,362 chrIX 25594 . T A,G 223.02 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.142;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.7542;MLEAC=1,1;MLEAF=0.500,0.500;MQ=34.12;MQ0=1;MQRankSum=-2.426;QD=4.85;ReadPosRankSum=-4.469;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/2:9,16,21:46:55:283,55,195,76,0,218 chrIX 25597 . G T 98.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.394;DP=50;Dels=0.00;FS=46.930;HaplotypeScore=39.6035;MLEAC=1;MLEAF=0.500;MQ=33.55;MQ0=1;MQRankSum=-2.154;QD=1.96;ReadPosRankSum=-3.055;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,23:50:99:128,0,472 chrIX 25602 . C A 198.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.944;DP=46;Dels=0.00;FS=101.931;HaplotypeScore=44.9699;MLEAC=1;MLEAF=0.500;MQ=33.90;MQ0=1;MQRankSum=-0.882;QD=4.30;ReadPosRankSum=2.472;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:18,26:46:99:228,0,272 chrIX 25603 . T A 98.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;DP=45;Dels=0.00;FS=21.208;HaplotypeScore=43.9611;MLEAC=1;MLEAF=0.500;MQ=34.00;MQ0=1;MQRankSum=2.502;QD=2.18;ReadPosRankSum=4.510;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,9:45:99:128,0,353 chrIX 25635 . C T 116.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;DP=32;Dels=0.00;FS=9.700;HaplotypeScore=15.8919;MLEAC=1;MLEAF=0.500;MQ=34.60;MQ0=3;MQRankSum=2.317;QD=3.63;ReadPosRankSum=0.665;SB=-3.007e+00 GT:AD:DP:GQ:PL 0/1:22,10:32:99:146,0,176 chrIX 25636 . T A 122.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;DP=33;Dels=0.00;FS=39.242;HaplotypeScore=18.6470;MLEAC=1;MLEAF=0.500;MQ=34.23;MQ0=3;MQRankSum=2.000;QD=3.70;ReadPosRankSum=-1.266;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:12,10:33:99:152,0,150 chrIX 25666 . T G 294 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=5;MQRankSum=1.103;QD=7.74;ReadPosRankSum=1.628;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:1,37:38:36:327,36,0 chrIX 25677 . C T 117.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;DP=59;Dels=0.00;FS=2.876;HaplotypeScore=20.4360;MLEAC=1;MLEAF=0.500;MQ=25.42;MQ0=5;MQRankSum=-0.816;QD=1.98;ReadPosRankSum=-0.195;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,24:59:99:147,0,268 chrIX 25678 . T A 112.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.864;DP=60;Dels=0.00;FS=2.915;HaplotypeScore=20.4360;MLEAC=1;MLEAF=0.500;MQ=25.63;MQ0=5;MQRankSum=-1.847;QD=1.87;ReadPosRankSum=-0.490;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,25:60:99:142,0,259 chrIX 25681 . A G 501 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=28.5883;MLEAC=2;MLEAF=1.00;MQ=24.35;MQ0=5;QD=7.48;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:60:534,60,0 chrIX 25728 . C A 210.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.764;DP=158;Dels=0.00;FS=8.200;HaplotypeScore=44.0038;MLEAC=1;MLEAF=0.500;MQ=24.62;MQ0=2;MQRankSum=7.318;QD=1.33;ReadPosRankSum=-2.023;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:95,63:158:99:240,0,754 chrIX 25729 . T A 206.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.001;DP=158;Dels=0.00;FS=8.200;HaplotypeScore=44.9616;MLEAC=1;MLEAF=0.500;MQ=24.62;MQ0=2;MQRankSum=6.780;QD=1.30;ReadPosRankSum=-2.317;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:95,63:158:99:236,0,739 chrIX 25761 . C T 124.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.580;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=71.4868;MLEAC=1;MLEAF=0.500;MQ=25.79;MQ0=0;MQRankSum=3.856;QD=0.74;ReadPosRankSum=0.676;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:72,94:166:99:154,0,772 chrIX 25762 . T A 149.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.097;DP=166;Dels=0.01;FS=2.829;HaplotypeScore=71.4868;MLEAC=1;MLEAF=0.500;MQ=25.83;MQ0=0;MQRankSum=4.025;QD=0.90;ReadPosRankSum=-0.528;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:60,94:165:99:179,0,652 chrIX 25765 . A G 1075 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=164;Dels=0.00;FS=12.943;HaplotypeScore=67.5237;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;MQRankSum=1.615;QD=6.55;ReadPosRankSum=2.324;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:2,154:164:99:1108,120,0 chrIX 25792 . T G 554 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=5.60;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,99:99:66:587,66,0 chrIX 25813 . G T 153.06 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=2.28;SB=-7.107e+01 GT:AD:DP:GQ:PL 1/1:0,62:67:21:186,21,0 chrIX 25832 . G A 46.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.365;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.641;QD=1.24;ReadPosRankSum=-1.733;SB=-2.998e+01 GT:AD:DP:GQ:PL 1/1:1,37:38:9:79,9,0 chrIX 25857 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.18;SB=-5.474e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:6:53,6,0 chrIX 25867 . C T 107.26 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.29;SB=-1.403e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:15:140,15,0 chrIX 25874 . C T 111.26 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.27;SB=-1.723e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:15:144,15,0 chrIX 25880 . G A 128.13 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.46;SB=-1.901e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:18:161,18,0 chrIX 25881 . T C 122.13 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.30;SB=-1.821e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:18:155,18,0 chrIX 25890 . C A 248 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=4.28;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:30:281,30,0 chrIX 25897 . T G 287 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;MQRankSum=-1.732;QD=3.63;ReadPosRankSum=1.162;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:36:320,36,0 chrIX 25898 . G C 281 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=3.51;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:36:314,36,0 chrIX 25902 . T C 488 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=93;Dels=0.00;FS=2.597;HaplotypeScore=1.9827;MLEAC=2;MLEAF=1.00;MQ=29.12;MQ0=0;MQRankSum=-1.946;QD=5.25;ReadPosRankSum=2.925;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:3,90:93:60:521,60,0 chrIX 25906 . A G 612 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.2375;MLEAC=2;MLEAF=1.00;MQ=32.17;MQ0=0;QD=5.67;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,105:108:72:645,72,0 chrIX 26200 . A G 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=158;Dels=0.00;FS=3.208;HaplotypeScore=8.1902;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-1.556;QD=21.78;ReadPosRankSum=1.710;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3441,393,0 chrIX 26226 . A G 3845.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=184;Dels=0.00;FS=3.463;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.457;QD=20.90;ReadPosRankSum=1.713;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:3845,438,0 chrIX 26294 . G A 4055.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=23.44;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4055,435,0 chrIX 26381 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=150;Dels=0.00;FS=7.682;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;MQRankSum=0.627;QD=22.21;ReadPosRankSum=2.282;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:2,145:150:99:3332,366,0 chrIX 26436 . C G 3552.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=22.34;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3552,396,0 chrIX 26442 . C A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=23.42;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3771,405,0 chrIX 26499 . T A 2432 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;QD=19.46;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2465,267,0 chrIX 26507 . G A 2213 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.61;MQ0=0;QD=18.29;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2246,249,0 chrIX 26556 . C G 1251 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=13.17;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,91:95:99:1284,141,0 chrIX 26564 . A G 1274 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=0;QD=13.85;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1307,144,0 chrIX 26575 . A G 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;MQRankSum=1.207;QD=13.32;ReadPosRankSum=1.697;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1352,150,0 chrIX 26591 . T A 1334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=109;Dels=0.00;FS=11.122;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.65;MQ0=0;MQRankSum=-2.528;QD=12.24;ReadPosRankSum=2.917;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:3,106:109:99:1367,153,0 chrIX 26620 . T C 1389 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=12.40;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1422,159,0 chrIX 26639 . A G 1393 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.58;MQ0=0;QD=12.33;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1426,159,0 chrIX 26667 . T C 986 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.77;MQ0=0;QD=10.96;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1019,114,0 chrIX 26668 . C T 988 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.77;MQ0=0;QD=10.98;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1021,114,0 chrIX 26686 . A G 1103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=101;Dels=0.00;FS=3.235;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=0;MQRankSum=-1.732;QD=10.92;ReadPosRankSum=1.697;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,98:101:99:1136,129,0 chrIX 26716 . G A 1076 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.03;MQ0=0;QD=12.23;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1109,123,0 chrIX 26728 . C T 794 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.80;MQ0=0;QD=10.59;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:96:827,96,0 chrIX 26761 . T C 945 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;QD=14.77;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:978,114,0 chrIX 26783 . G C 848 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.42;MQ0=0;QD=12.29;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:881,105,0 chrIX 26788 . A G 826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;MQRankSum=-0.577;QD=11.63;ReadPosRankSum=1.682;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:859,102,0 chrIX 26801 . T C 935 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=0;QD=13.96;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:968,114,0 chrIX 26833 . A G 1427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=2.660;HaplotypeScore=3.5548;MLEAC=2;MLEAF=1.00;MQ=34.47;MQ0=0;MQRankSum=-0.533;QD=17.62;ReadPosRankSum=2.389;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1460,162,0 chrIX 26915 . C T 1989 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6262;MLEAC=2;MLEAF=1.00;MQ=35.09;MQ0=0;QD=20.72;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2022,231,0 chrIX 26982 . C T 2274 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;QD=22.97;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2307,246,0 chrIX 27023 . A G 2048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=10.510;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=33.03;MQ0=0;MQRankSum=-1.848;QD=23.81;ReadPosRankSum=2.393;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:2081,234,0 chrIX 27046 . A G 1675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=8.151;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.80;MQ0=0;MQRankSum=-2.298;QD=20.68;ReadPosRankSum=2.389;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1708,192,0 chrIX 27068 . G A 1376 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.95;MQ0=0;QD=19.38;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1409,156,0 chrIX 27090 . A G 1113 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.849;DP=78;Dels=0.00;FS=9.381;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;MQRankSum=-0.691;QD=14.27;ReadPosRankSum=3.024;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:4,74:78:99:1146,112,0 chrIX 27097 . T C 1037 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.958;DP=71;Dels=0.00;FS=5.994;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.13;MQ0=0;MQRankSum=0.586;QD=14.61;ReadPosRankSum=2.301;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:99:1070,117,0 chrIX 27099 . C T 1053 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.04;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=15.04;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1086,117,0 chrIX 27108 . A G 1184 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;MQRankSum=-1.299;QD=14.80;ReadPosRankSum=1.689;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1217,132,0 chrIX 27114 . A C 788 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=11.26;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:821,105,0 chrIX 27118 . C T 1048 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=69.4753;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=12.63;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1081,117,0 chrIX 27129 . A G 999 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;QD=11.22;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1032,117,0 chrIX 27132 . C G 1045 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=11.61;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1078,120,0 chrIX 27219 . A G 1443 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.7142;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;MQRankSum=-1.618;QD=11.93;ReadPosRankSum=1.274;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1476,162,0 chrIX 27224 . G A 1318 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.352;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6678;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=0;MQRankSum=-1.673;QD=11.17;ReadPosRankSum=1.556;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1351,153,0 chrIX 27227 . A G 1283 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=3.680;HaplotypeScore=9.0953;MLEAC=2;MLEAF=1.00;MQ=29.63;MQ0=0;MQRankSum=0.771;QD=10.78;ReadPosRankSum=1.674;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1316,147,0 chrIX 27230 . A G 1265 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=120;Dels=0.00;FS=11.562;HaplotypeScore=5.3373;MLEAC=2;MLEAF=1.00;MQ=29.15;MQ0=0;MQRankSum=-0.286;QD=10.54;ReadPosRankSum=2.942;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:1298,144,0 chrIX 27241 . G A 1311 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.95;MQ0=0;QD=12.14;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1344,147,0 chrIX 27378 . C A 3024 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=36.95;MQ0=0;QD=21.60;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3057,336,0 chrIX 27571 . G T 213.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=1.48;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:27:246,27,0 chrIX 27585 . G A 825 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=41.53;MQ0=0;QD=5.61;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:93:858,93,0 chrIX 27707 . G T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=21.72;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3605,396,0 chrIX 27757 . T A 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.627;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;MQRankSum=0.233;QD=20.53;ReadPosRankSum=1.683;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2948,314,0 chrIX 27924 . G A 2327 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;QD=21.75;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2360,252,0 chrIX 27959 . A G 1699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.847;DP=94;Dels=0.00;FS=3.039;HaplotypeScore=74.9183;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;MQRankSum=-2.109;QD=18.07;ReadPosRankSum=2.345;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1732,165,0 chrIX 27963 . C A 1832 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=85.0452;MLEAC=2;MLEAF=1.00;MQ=37.58;MQ0=0;QD=18.69;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1865,201,0 chrIX 27994 . T C 2109 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=17.43;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2142,234,0 chrIX 28029 . T G 2517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=4.838;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=1.626;QD=19.07;ReadPosRankSum=1.706;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2550,282,0 chrIX 28067 . A T 2033 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.171;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=38.08;MQ0=0;MQRankSum=-1.382;QD=19.18;ReadPosRankSum=2.403;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2066,228,0 chrIX 28070 . T C 1896 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=103;Dels=0.00;FS=6.284;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.25;MQ0=0;MQRankSum=-1.426;QD=18.41;ReadPosRankSum=1.630;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:1929,222,0 chrIX 28077 . A C 1906 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;MQRankSum=-1.347;QD=19.25;ReadPosRankSum=1.697;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1939,216,0 chrIX 28102 . T C 1655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=96;Dels=0.00;FS=11.818;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;MQRankSum=-1.757;QD=17.24;ReadPosRankSum=2.398;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1688,189,0 chrIX 28108 . G A 1644 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;QD=15.96;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1677,186,0 chrIX 28161 . G A 2063 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=16.77;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2096,231,0 chrIX 28168 . G T 2013 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.45;MQ0=0;QD=16.92;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2046,228,0 chrIX 28169 . G A 2071 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;QD=17.12;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2104,228,0 chrIX 28247 . T A 2245 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=39.37;MQ0=0;QD=15.59;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2278,240,0 chrIX 28273 . C G 1334 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.15;MQ0=0;QD=12.24;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1367,162,0 chrIX 28278 . A G 1133 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.04;MQ0=0;QD=11.56;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1166,135,0 chrIX 28282 . T A 899 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;MQRankSum=-1.732;QD=10.83;ReadPosRankSum=1.690;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:932,108,0 chrIX 28283 . G A 916 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=10.90;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:949,108,0 chrIX 28304 . T C 1032 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=0;QD=15.40;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1065,120,0 chrIX 28317 . G C 987 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;QD=15.67;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1020,111,0 chrIX 28371 . C T 1965 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=20.68;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1998,219,0 chrIX 28411 . C A 2634 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=21.24;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2667,282,0 chrIX 28464 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;QD=22.03;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2809,297,0 chrIX 28563 . A G 1025 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=17.67;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1058,120,0 chrIX 28874 . G C 3063 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=25.74;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3096,333,0 chrIX 28989 . G C 3016 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.13;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3049,330,0 chrIX 29044 . T C 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.734;DP=146;Dels=0.00;FS=2.305;HaplotypeScore=6.4099;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-0.452;QD=20.99;ReadPosRankSum=3.766;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:5,141:146:99:3097,339,0 chrIX 29074 . T G 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.9188;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;MQRankSum=0.250;QD=16.01;ReadPosRankSum=2.943;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:3,154:157:99:2546,279,0 chrIX 29079 . G T 2443 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.2645;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=14.72;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,163:166:99:2476,273,0 chrIX 29094 . A T 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=6.545;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.653;QD=17.02;ReadPosRankSum=1.691;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:1,166:167:99:2875,312,0 chrIX 29124 . G T 2585 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8016;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=17.47;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2618,279,0 chrIX 29193 . G A 3630.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=25.74;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3630,393,0 chrIX 29410 . G A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=20.36;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3299,357,0 chrIX 29414 . G T 3027 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=18.69;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3060,345,0 chrIX 29472 . C T 3691.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.3339;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=19.43;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3691,402,0 chrIX 29565 . G A 4016.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.9053;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.69;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4016,447,0 chrIX 29628 . G C 3820.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.60;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3820,411,0 chrIX 30915 . A T 2300 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=112;Dels=0.00;FS=9.389;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-1.712;QD=20.54;ReadPosRankSum=2.451;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2333,258,0 chrIX 30917 . T A 2226 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=108;Dels=0.00;FS=6.139;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.187;QD=20.61;ReadPosRankSum=2.767;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2259,255,0 chrIX 30924 . C T 2207 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=22.52;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2240,243,0 chrIX 31217 . G A 4548.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.85;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4548,507,0 chrIX 31312 . A G 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.3561;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.133;QD=21.89;ReadPosRankSum=1.688;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3415,372,0 chrIX 31904 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=21.35;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2873,309,0 chrIX 31909 . A G 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=0.212;QD=20.10;ReadPosRankSum=1.682;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:2867,315,0 chrIX 31948 . G A 2914 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.81;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2947,315,0 chrIX 32147 . G C 1908 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=20.52;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,90:93:99:1941,219,0 chrIX 32156 . A G 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-1.658;QD=22.06;ReadPosRankSum=1.620;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2085,225,0 chrIX 32483 . C T 2260 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.30;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2293,243,0 chrIX 32569 . A G 2782 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.62;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2815,303,0 chrIX 32689 . G A 3941.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.18;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3941,423,0 chrIX 32753 . T A 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=151;Dels=0.00;FS=2.599;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=1.457;QD=23.82;ReadPosRankSum=2.417;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3597,387,0 chrIX 32809 . C T 4001.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=15.8249;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=24.40;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4001,438,0 chrIX 32963 . C G 4870.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=0;QD=23.76;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4870,531,0 chrIX 33008 . C T 3943.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=34.66;MQ0=0;QD=21.09;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3943,444,0 chrIX 33018 . C G 3382.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=19.89;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,166:170:99:3382,387,0 chrIX 33032 . G A 3394.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.41;MQ0=0;QD=19.51;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3394,387,0 chrIX 33147 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=0;QD=21.27;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3269,369,0 chrIX 33198 . T G 1334 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=15.88;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1367,159,0 chrIX 33211 . T C 1131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=7.377;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=0;MQRankSum=0.127;QD=13.79;ReadPosRankSum=1.648;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1164,138,0 chrIX 33224 . T C 1367 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;QD=14.39;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1400,162,0 chrIX 33244 . T C 1573 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=16.22;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1606,183,0 chrIX 33247 . T C 1644 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=36.22;MQ0=0;QD=16.12;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1677,192,0 chrIX 33327 . A G 1036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.538;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.9879;MLEAC=2;MLEAF=1.00;MQ=38.39;MQ0=0;MQRankSum=-1.583;QD=15.24;ReadPosRankSum=2.897;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:3,65:68:99:1069,123,0 chrIX 33340 . A G 890 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.276;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=34.51;MQ0=0;MQRankSum=-2.365;QD=17.12;ReadPosRankSum=3.276;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:4,47:52:99:923,105,0 chrIX 33343 . G T 898 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.90;MQ0=0;QD=17.96;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:931,108,0 chrIX 33348 . A T 807 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.08;MQ0=0;QD=17.17;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:840,99,0 chrIX 33364 . T G 557 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.31;MQ0=0;QD=14.28;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:69:590,69,0 chrIX 33412 . A G 322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=28;Dels=0.00;FS=3.080;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;MQRankSum=-2.186;QD=11.50;ReadPosRankSum=2.275;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:2,26:28:45:355,45,0 chrIX 33423 . T A 349 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=0;QD=12.46;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:48:382,48,0 chrIX 33431 . T C 347 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.51;MQ0=0;QD=11.97;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:48:380,48,0 chrIX 33435 . C G 371 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.76;MQ0=0;QD=13.25;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:51:404,51,0 chrIX 33449 . C T 375 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=13.89;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:51:408,51,0 chrIX 33484 . A G 387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;MQRankSum=0.990;QD=13.82;ReadPosRankSum=1.609;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:48:420,48,0 chrIX 33485 . T C 390 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=0;QD=14.44;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:48:423,48,0 chrIX 33503 . A T 356 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.91;MQ0=0;QD=10.79;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:45:389,45,0 chrIX 33522 . G T 469 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=0;QD=12.34;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:57:502,57,0 chrIX 33524 . G A 464 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=0;QD=12.21;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:57:497,57,0 chrIX 33548 . T A 472 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=0;QD=9.63;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:60:505,60,0 chrIX 33549 . G T 492 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=0;QD=9.84;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:60:525,60,0 chrIX 33552 . T G 527 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=0;QD=10.54;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:66:560,66,0 chrIX 33562 . G T 532 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;QD=10.43;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:69:565,69,0 chrIX 33581 . C A 496 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.56;MQ0=0;QD=9.92;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:63:529,63,0 chrIX 33599 . A T 536 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.59;MQ0=0;QD=11.17;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:66:569,66,0 chrIX 33645 . C T 1075 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;QD=13.27;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1108,123,0 chrIX 33649 . C G 1110 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=12.47;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1143,126,0 chrIX 33702 . T C 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5146;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=-0.445;QD=19.24;ReadPosRankSum=1.683;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2727,297,0 chrIX 33799 . G A 2987 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=21.34;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3020,318,0 chrIX 33811 . G A 2975 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=19.70;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3008,321,0 chrIX 33870 . G T 4219.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.5445;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=21.10;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4219,450,0 chrIX 34009 . T C 5668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=17.9202;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.842;QD=22.05;ReadPosRankSum=1.678;SB=-2.840e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:5668,642,0 chrIX 34088 . T C 5992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.609;DP=278;Dels=0.00;FS=7.944;HaplotypeScore=17.5447;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=2.060;QD=21.55;ReadPosRankSum=3.783;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:5,273:278:99:5992,672,0 chrIX 34809 . G A 2629 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=23.68;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2662,285,0 chrIX 34826 . G T 2841 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.37;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2874,315,0 chrIX 34975 . C A 2270 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.93;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2303,246,0 chrIX 35111 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.0024;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=18.41;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3254,366,0 chrIX 35118 . C G 3156 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.8928;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.79;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3189,348,0 chrIX 35226 . C T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.29;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3330,351,0 chrIX 35247 . T C 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=3.041;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-1.102;QD=20.29;ReadPosRankSum=1.659;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2935,327,0 chrIX 35312 . G A 2755 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9131;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.56;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2788,300,0 chrIX 35674 . T C 3793.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=200;Dels=0.00;FS=2.969;HaplotypeScore=3.1473;MLEAC=2;MLEAF=1.00;MQ=36.39;MQ0=0;MQRankSum=0.988;QD=18.97;ReadPosRankSum=2.413;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:3793,432,0 chrIX 35677 . G A 3885.01 SnpCluster AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;QD=19.23;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3885,429,0 chrIX 35680 . G A 3792.01 SnpCluster AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;QD=19.06;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3792,414,0 chrIX 35685 . G A 3509.01 SnpCluster AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=17.55;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:3509,387,0 chrIX 35691 . T C 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=200;Dels=0.00;FS=3.030;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=36.95;MQ0=0;MQRankSum=-1.931;QD=15.44;ReadPosRankSum=2.425;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:3121,366,0 chrIX 35770 . T C 4632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=251;Dels=0.00;FS=6.394;HaplotypeScore=8.2338;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-1.635;QD=18.45;ReadPosRankSum=2.175;SB=-3.039e+03 GT:AD:DP:GQ:PL 1/1:2,248:251:99:4632,522,0 chrIX 35773 . T G 4821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=249;Dels=0.00;FS=6.432;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-0.054;QD=19.36;ReadPosRankSum=2.410;SB=-3.038e+03 GT:AD:DP:GQ:PL 1/1:2,247:249:99:4821,528,0 chrIX 35804 . C T 4332.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=18.43;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:4332,462,0 chrIX 35871 . C T 3929.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=21.12;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3929,450,0 chrIX 35894 . A G 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=199;Dels=0.00;FS=2.839;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;MQRankSum=-0.862;QD=20.25;ReadPosRankSum=2.363;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4030,467,0 chrIX 35903 . G T 4084.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=20.63;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4084,459,0 chrIX 35910 . T G 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=3.935;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;MQRankSum=-0.153;QD=20.92;ReadPosRankSum=1.714;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4038,456,0 chrIX 35983 . C T 3127 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=20.71;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3160,333,0 chrIX 36103 . G A 3053 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.35;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3086,342,0 chrIX 36218 . C T 3588.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.74;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3588,387,0 chrIX 36220 . A G 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.01;FS=4.071;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.133;QD=24.28;ReadPosRankSum=1.708;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3521,378,0 chrIX 36317 . A G 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.347;DP=141;Dels=0.00;FS=8.995;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.292;QD=24.37;ReadPosRankSum=3.322;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:4,137:141:99:3436,369,0 chrIX 36359 . T C 3577.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.36;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3577,399,0 chrIX 36456 . C A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=23.24;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3264,351,0 chrIX 36580 . A C 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=178;Dels=0.00;FS=8.349;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.243;QD=21.51;ReadPosRankSum=2.422;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3829,432,0 chrIX 36609 . C T 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.213;DP=153;Dels=0.00;FS=2.862;HaplotypeScore=24.4359;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-1.406;QD=18.52;ReadPosRankSum=1.149;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2866,315,0 chrIX 36681 . C T 3941.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.71;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3941,447,0 chrIX 36687 . A G 4098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=204;Dels=0.00;FS=3.005;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-1.306;QD=20.09;ReadPosRankSum=2.413;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4098,459,0 chrIX 37634 . A C 6376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=307;Dels=0.00;FS=5.895;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=1.709;QD=20.77;ReadPosRankSum=2.925;SB=-3.480e+03 GT:AD:DP:GQ:PL 1/1:3,304:307:99:6376,711,0 chrIX 37646 . C G 5795.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=10.8114;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.38;SB=-3.059e+03 GT:AD:DP:GQ:PL 1/1:0,294:298:99:5795,654,0 chrIX 37723 . G C 5938.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=19.2510;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.51;SB=-2.966e+03 GT:AD:DP:GQ:PL 1/1:0,274:276:99:5938,663,0 chrIX 37771 . G A 6013.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.34;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:6013,654,0 chrIX 37822 . T C 5908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=257;Dels=0.00;FS=3.708;HaplotypeScore=22.3854;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.095;QD=22.99;ReadPosRankSum=1.691;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:1,255:257:99:5908,648,0 chrIX 37984 . T G 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=185;Dels=0.00;FS=6.991;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.591;QD=19.97;ReadPosRankSum=2.423;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3695,420,0 chrIX 38006 . C T 4015.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.3365;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.94;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4015,429,0 chrIX 38050 . C T 3858.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.0727;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.30;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3858,414,0 chrIX 38101 . T C 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.292;DP=159;Dels=0.00;FS=8.960;HaplotypeScore=15.5264;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.897;QD=21.98;ReadPosRankSum=3.403;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:4,153:159:99:3495,387,0 chrIX 38251 . G A 4194.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.30;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4194,462,0 chrIX 38467 . T C 5177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.784;DP=228;Dels=0.00;FS=12.019;HaplotypeScore=16.5900;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.747;QD=22.71;ReadPosRankSum=3.736;SB=-2.970e+03 GT:AD:DP:GQ:PL 1/1:5,223:228:99:5177,553,0 chrIX 38608 . T C 3080 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=16.38;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3113,339,0 chrIX 38609 . G C 3100 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=16.58;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3133,342,0 chrIX 38929 . T C 3505.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.24;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3505,402,0 chrIX 39258 . C T 1630 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=23.97;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1663,183,0 chrIX 39286 . A C 1540 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=20.00;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1573,174,0 chrIX 39289 . T C 1420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-0.638;QD=18.68;ReadPosRankSum=1.687;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1453,165,0 chrIX 39328 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.37;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1428,153,0 chrIX 39386 . C T 974 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;QD=12.17;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,76:80:99:1007,111,0 chrIX 39393 . T G 1095 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1242;MLEAC=2;MLEAF=1.00;MQ=42.97;MQ0=0;QD=12.17;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1128,126,0 chrIX 39427 . A G 1349 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=13.49;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1382,153,0 chrIX 39470 . C T 1766 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=16.82;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1799,195,0 chrIX 39475 . G A 1747 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=17.13;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1780,189,0 chrIX 39962 . T A 2422 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.23;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2455,261,0 chrIX 40145 . G A 2982 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.93;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:3015,327,0 chrIX 40190 . A G 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=136;Dels=0.00;FS=5.078;HaplotypeScore=14.3234;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.128;QD=23.63;ReadPosRankSum=1.706;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:2,131:136:99:3247,354,0 chrIX 40512 . G A 4850.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.3071;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4850,517,0 chrIX 40928 . G A 3953.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.6420;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.40;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3953,423,0 chrIX 40953 . G A 4016.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.56;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4016,429,0 chrIX 41223 . A G 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=186;Dels=0.00;FS=5.590;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.288;QD=21.56;ReadPosRankSum=2.951;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:3,182:186:99:4011,441,0 chrIX 41415 . A G 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=2.824;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.621;QD=20.20;ReadPosRankSum=2.405;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2235,243,0 chrIX 41439 . A T 2815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.9011;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=1.344;QD=21.01;ReadPosRankSum=1.603;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2848,309,0 chrIX 41532 . A G 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.273;DP=180;Dels=0.00;FS=8.091;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.152;QD=22.34;ReadPosRankSum=3.410;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:4,174:180:99:4022,447,0 chrIX 41810 . G A 4399.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.0049;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.18;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4399,468,0 chrIX 41898 . T C 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.0032;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=1.081;QD=22.25;ReadPosRankSum=1.662;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4405,471,0 chrIX 41905 . A G 4265.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.7946;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.22;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4265,471,0 chrIX 42365 . A G 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=120;Dels=0.00;FS=3.042;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.015;QD=23.35;ReadPosRankSum=2.368;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2835,303,0 chrIX 42679 . T C 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.110;DP=118;Dels=0.00;FS=3.001;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.053;QD=21.59;ReadPosRankSum=2.259;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:2,114:118:99:2581,285,0 chrIX 42862 . A T 2421 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.50;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2454,261,0 chrIX 43318 . G A 2238 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2271,252,0 chrIX 43493 . T C 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.463;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.657;QD=23.78;ReadPosRankSum=1.702;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2815,291,0 chrIX 43753 . C A 2507 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.88;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2540,273,0 chrIX 44230 . A T 3043 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9612;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.76;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3076,333,0 chrIX 44331 . G A 2211 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=13.73;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2244,243,0 chrIX 44433 . A G 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.5023;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-2.065;QD=20.04;ReadPosRankSum=1.201;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:3627,402,0 chrIX 44632 . C T 3714.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.76;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3714,396,0 chrIX 44674 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.56;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3610,387,0 chrIX 44800 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=25.76;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3529,378,0 chrIX 44890 . G A 1907 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=14.23;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1940,210,0 chrIX 44979 . C T 2902 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2935,321,0 chrIX 45115 . C T 2636 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2669,294,0 chrIX 45203 . A G 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=134;Dels=0.00;FS=5.884;HaplotypeScore=9.0886;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.684;QD=22.39;ReadPosRankSum=2.948;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:3033,336,0 chrIX 45259 . T C 2558 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.7957;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.44;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2591,279,0 chrIX 45367 . G A 2320 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.68;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2353,252,0 chrIX 45530 . C T 3083 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.27;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3116,330,0 chrIX 45559 . A C 3089 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.88;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3122,348,0 chrIX 45691 . T G 4371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.521;QD=23.89;ReadPosRankSum=1.713;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4371,471,0 chrIX 45705 . G A 4250.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.48;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4250,450,0 chrIX 45746 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.479;QD=21.41;ReadPosRankSum=1.709;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3276,360,0 chrIX 45805 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=4.055;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.589;QD=22.76;ReadPosRankSum=1.565;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3300,354,0 chrIX 45859 . C T 4719.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.48;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4719,505,0 chrIX 46057 . C G 3282.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3282,381,0 chrIX 46102 . C A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.06;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,158:162:99:3735,399,0 chrIX 46174 . A G 3971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=178;Dels=0.00;FS=9.641;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=1.511;QD=22.31;ReadPosRankSum=2.394;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3971,432,0 chrIX 46189 . T C 3688.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=19.94;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3688,414,0 chrIX 46211 . T C 3210.99 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=18.89;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3244,357,0 chrIX 46556 . C T 5131.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.8576;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.15;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5131,544,0 chrIX 46692 . G A 4028.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4028,435,0 chrIX 46811 . A G 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.400;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.207;QD=20.95;ReadPosRankSum=3.330;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:4,146:151:99:3197,351,0 chrIX 47048 . C T 1851 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=16.53;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1884,204,0 chrIX 47054 . G T 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=111;Dels=0.00;FS=6.435;HaplotypeScore=4.7570;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=0.913;QD=17.59;ReadPosRankSum=1.606;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,109:111:99:1986,219,0 chrIX 47493 . G A 4444.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.1727;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.68;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4444,489,0 chrIX 47766 . G A 4199.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.33;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4199,447,0 chrIX 47916 . T C 3458.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.58;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3458,393,0 chrIX 47931 . T A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.30;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3366,366,0 chrIX 48626 . G A 7940.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=15.9862;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.49;SB=-4.412e+03 GT:AD:DP:GQ:PL 1/1:0,338:338:99:7940,859,0 chrIX 48693 . A G 5499.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.39;SB=-3.288e+03 GT:AD:DP:GQ:PL 1/1:0,299:299:99:5499,612,0 chrIX 48699 . C T 5338.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=17.91;SB=-3.415e+03 GT:AD:DP:GQ:PL 1/1:0,296:298:99:5338,597,0 chrIX 48780 . T C 6863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=304;Dels=0.00;FS=6.055;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.056;QD=22.58;ReadPosRankSum=2.970;SB=-3.964e+03 GT:AD:DP:GQ:PL 1/1:3,301:304:99:6863,750,0 chrIX 48813 . A G 7485.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=13.5290;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.69;SB=-4.080e+03 GT:AD:DP:GQ:PL 1/1:0,315:316:99:7485,819,0 chrIX 48879 . C T 5467.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=17.8913;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.87;SB=-2.995e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5467,591,0 chrIX 49143 . G A 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.478;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.386;QD=23.03;ReadPosRankSum=0.785;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3478,364,0 chrIX 49473 . C T 2695 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.05;FS=0.000;HaplotypeScore=41.9715;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.91;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2728,297,0 chrIX 49550 . T C 3806.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.01;FS=0.000;HaplotypeScore=35.4574;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.82;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3806,423,0 chrIX 49641 . T G 3924.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.9933;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.02;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:3924,447,0 chrIX 50388 . T A 5203.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=220;Dels=0.00;FS=3.030;HaplotypeScore=13.4989;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.229;QD=23.65;ReadPosRankSum=2.427;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:5203,573,0 chrIX 51147 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.27;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3341,372,0 chrIX 51323 . T C 87.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.994;DP=123;Dels=0.00;FS=3.388;HaplotypeScore=103.3361;MLEAC=1;MLEAF=0.500;MQ=53.25;MQ0=0;MQRankSum=0.110;QD=0.71;ReadPosRankSum=-5.244;SB=-3.102e+01 GT:AD:DP:GQ:PL 0/1:107,13:123:22:117,0,22 chrIX 51326 . T C 46.34 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.833;DP=118;Dels=0.00;FS=6.881;HaplotypeScore=98.4060;MLEAC=1;MLEAF=0.500;MQ=52.95;MQ0=0;MQRankSum=1.560;QD=0.39;ReadPosRankSum=4.946;SB=-5.503e+02 GT:AD:DP:GQ:PL 0/1:9,108:118:8:76,0,8 chrIX 51337 . A G 2246 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.88;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2279,249,0 chrIX 51375 . T C 2152 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.31;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2185,237,0 chrIX 51640 . C A 264 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;QD=18.86;SB=-1.719e+02 GT:AD:DP:GQ:PL 1/1:0,13:14:33:297,33,0 chrIX 51702 . C T 1138 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1171,126,0 chrIX 51730 . C T 1678 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.74;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1711,183,0 chrIX 51756 . G C 2469 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.10;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2502,282,0 chrIX 51897 . G A 2863 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.54;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2896,309,0 chrIX 52260 . G A 6530.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=18.0258;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-3.038e+03 GT:AD:DP:GQ:PL 1/1:0,292:293:99:6530,720,0 chrIX 52725 . G A 4836.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=17.4537;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.18;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,214:218:99:4836,519,0 chrIX 52905 . C T 4729.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.50;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:4729,516,0 chrIX 53010 . C G 5166.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=18.1660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.26;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5166,579,0 chrIX 53091 . G C 3614.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=18.25;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,193:198:99:3614,411,0 chrIX 53103 . A G 3678.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.16;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3678,405,0 chrIX 53238 . T C 5221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=228;Dels=0.00;FS=6.004;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.058;QD=22.90;ReadPosRankSum=2.942;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:3,222:228:99:5221,585,0 chrIX 53484 . G C 4288.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.1435;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.85;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4288,471,0 chrIX 53815 . C T 3867.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.02;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3867,414,0 chrIX 53832 . G A 3893.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.28;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,187:192:99:3893,429,0 chrIX 53860 . T C 4509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=222;Dels=0.00;FS=2.933;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-0.183;QD=20.31;ReadPosRankSum=2.416;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:2,219:222:99:4509,501,0 chrIX 53965 . G C 8050.01 PASS AC=2;AF=1.00;AN=2;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=39.1132;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.68;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,332:340:99:8050,871,0 chrIX 54404 . G C 5928.01 PASS AC=2;AF=1.00;AN=2;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=25.7934;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=17.18;SB=-3.865e+03 GT:AD:DP:GQ:PL 1/1:0,344:345:99:5928,675,0 chrIX 54480 . T C 7807.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.142;DP=388;Dels=0.00;FS=23.418;HaplotypeScore=35.4711;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.669;QD=20.12;ReadPosRankSum=4.165;SB=-4.077e+03 GT:AD:DP:GQ:PL 1/1:6,380:388:99:7807,841,0 chrIX 54551 . G A 7484.01 PASS AC=2;AF=1.00;AN=2;DP=354;Dels=0.00;FS=0.000;HaplotypeScore=28.1969;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.14;SB=-3.674e+03 GT:AD:DP:GQ:PL 1/1:0,353:354:99:7484,802,0 chrIX 54965 . G A 3329.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=20.8379;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=18.39;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3329,375,0 chrIX 55071 . C A 3870.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.4114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.26;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3870,420,0 chrIX 55251 . G A 11822.01 filter AC=2;AF=1.00;AN=2;DP=490;Dels=0.00;FS=0.000;HaplotypeScore=31.2002;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.13;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,488:490:99:11822,1273,0 chrIX 55428 . G T 13763.01 filter AC=2;AF=1.00;AN=2;DP=697;Dels=0.00;FS=0.000;HaplotypeScore=33.3341;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.75;SB=-9.133e+03 GT:AD:DP:GQ:PL 1/1:0,696:697:99:13763,1507,0 chrIX 55461 . A T 14122.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=691;Dels=0.00;FS=5.939;HaplotypeScore=40.4154;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.164;QD=20.44;ReadPosRankSum=2.984;SB=-8.271e+03 GT:AD:DP:GQ:PL 1/1:3,688:691:99:14122,1537,0 chrIX 55663 . G A 9732.01 filter AC=2;AF=1.00;AN=2;DP=563;Dels=0.00;FS=0.000;HaplotypeScore=8.5425;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=17.29;SB=-5.661e+03 GT:AD:DP:GQ:PL 1/1:0,563:563:99:9732,1051,0 chrIX 55666 . G A 9317.01 filter AC=2;AF=1.00;AN=2;DP=565;Dels=0.00;FS=0.000;HaplotypeScore=10.0764;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=16.49;SB=-5.439e+03 GT:AD:DP:GQ:PL 1/1:0,561:565:99:9317,1033,0 chrIX 55678 . A C 8532.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.763;DP=524;Dels=0.00;FS=7.902;HaplotypeScore=22.3043;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-0.787;QD=16.28;ReadPosRankSum=3.817;SB=-5.290e+03 GT:AD:DP:GQ:PL 1/1:5,518:524:99:8532,945,0 chrIX 55716 . T C 7225.01 filter AC=2;AF=1.00;AN=2;DP=442;Dels=0.00;FS=0.000;HaplotypeScore=26.4331;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=16.35;SB=-4.224e+03 GT:AD:DP:GQ:PL 1/1:0,442:442:99:7225,819,0 chrIX 55756 . C T 8669.01 filter AC=2;AF=1.00;AN=2;DP=401;Dels=0.00;FS=0.000;HaplotypeScore=28.0906;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.62;SB=-4.703e+03 GT:AD:DP:GQ:PL 1/1:0,396:401:99:8669,946,0 chrIX 55837 . T C 7959.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=381;Dels=0.00;FS=9.406;HaplotypeScore=27.5711;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.965;QD=20.89;ReadPosRankSum=2.404;SB=-3.122e+03 GT:AD:DP:GQ:PL 1/1:2,378:381:99:7959,882,0 chrIX 56028 . T A 5397.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.1969;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.49;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5397,606,0 chrIX 57000 . C T 4909.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=5.9942;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.80;SB=-3.004e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:4909,528,0 chrIX 57006 . G A 4906.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=4.2809;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=20.70;SB=-3.069e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4906,528,0 chrIX 57063 . C T 3008 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=18.80;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3041,330,0 chrIX 57096 . C T 2968 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=23.01;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3001,321,0 chrIX 57153 . C T 2432 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.71;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2465,276,0 chrIX 57683 . A G 5832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=256;Dels=0.00;FS=3.203;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.390;QD=22.78;ReadPosRankSum=1.705;SB=-3.038e+03 GT:AD:DP:GQ:PL 1/1:1,253:256:99:5832,651,0 chrIX 57890 . T C 5120.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=17.4865;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.56;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:0,223:227:99:5120,570,0 chrIX 58130 . C T 4128.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.45;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4128,444,0 chrIX 58256 . C G 3043 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.29;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3076,351,0 chrIX 58382 . C T 2994 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.01;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3027,336,0 chrIX 58436 . A G 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.339;DP=133;Dels=0.00;FS=8.410;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.188;QD=22.12;ReadPosRankSum=3.378;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:4,128:133:99:2975,324,0 chrIX 58508 . A G 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=112;Dels=0.00;FS=5.729;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-2.163;QD=19.25;ReadPosRankSum=2.775;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2189,246,0 chrIX 58511 . G A 2230 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.46;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2263,243,0 chrIX 59333 . T C 2944 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.33;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2977,330,0 chrIX 59546 . T C 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-1.600;QD=23.07;ReadPosRankSum=1.706;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3055,333,0 chrIX 59552 . T G 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-0.443;QD=21.62;ReadPosRankSum=1.678;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,128:133:99:2909,321,0 chrIX 59639 . T A 3200 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.4684;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.33;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3233,345,0 chrIX 59981 . T C 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=3.761;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.165;QD=20.69;ReadPosRankSum=1.677;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2660,303,0 chrIX 60280 . T C 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=185;Dels=0.00;FS=3.034;HaplotypeScore=20.9221;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.722;QD=21.29;ReadPosRankSum=2.423;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:2,180:185:99:3938,429,0 chrIX 60844 . T C 3283.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=17.3098;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.78;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3283,381,0 chrIX 60879 . A C 3639.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.19;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3639,399,0 chrIX 61274 . G A 2876 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2909,315,0 chrIX 61323 . C T 2562 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2595,282,0 chrIX 61466 . C A 2938 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.78;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2971,324,0 chrIX 62057 . A C 3361.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.41;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3361,384,0 chrIX 62438 . A G 3385.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2906;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.57;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3385,369,0 chrIX 62504 . C G 3546.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.70;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:1,175:180:99:3546,381,0 chrIX 62514 . A G 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=186;Dels=0.00;FS=2.993;HaplotypeScore=9.2625;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.733;QD=19.67;ReadPosRankSum=2.423;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:3658,408,0 chrIX 62815 . A G 2846 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.90;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2879,315,0 chrIX 63495 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:3267,357,0 chrIX 63655 . A G 3792.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.6688;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.41;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3792,417,0 chrIX 63838 . T C 3934.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.5227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3934,435,0 chrIX 64057 . C A 3395.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.05;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3395,375,0 chrIX 64231 . G A 2627 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.5789;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.69;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2660,285,0 chrIX 64310 . G A 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4460;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.155;QD=21.63;ReadPosRankSum=0.831;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2715,291,0 chrIX 64645 . G A 2916 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.76;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2949,315,0 chrIX 64705 . A G 4157.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.5361;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.49;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4157,450,0 chrIX 64944 . C T 4225.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.21;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4225,459,0 chrIX 65121 . T A 3977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=172;Dels=0.00;FS=6.148;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.207;QD=23.12;ReadPosRankSum=2.335;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3977,429,0 chrIX 65290 . C T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=22.57;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3431,363,0 chrIX 65341 . T C 2886 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.1108;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=19.63;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:2919,324,0 chrIX 65359 . T A 2676 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=18.58;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2709,291,0 chrIX 65368 . T C 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=3.266;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=0.544;QD=18.99;ReadPosRankSum=1.683;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2692,294,0 chrIX 65406 . A G 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=163;Dels=0.00;FS=5.863;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=1.118;QD=18.80;ReadPosRankSum=2.919;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:3,159:163:99:3098,333,0 chrIX 65518 . C A 2475 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=19.19;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2508,273,0 chrIX 65522 . T C 2482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=0.443;QD=19.09;ReadPosRankSum=1.678;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2515,276,0 chrIX 65551 . C T 2818 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=18.66;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2851,312,0 chrIX 65642 . T C 2865 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.54;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2898,309,0 chrIX 65711 . T C 2428 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.93;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2461,264,0 chrIX 65758 . G A 3132 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.21;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3165,342,0 chrIX 66115 . T A 1618 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=17.78;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1651,183,0 chrIX 66117 . T C 1645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.097;QD=18.08;ReadPosRankSum=1.693;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,88:91:99:1678,192,0 chrIX 66681 . G A 3201 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.86;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3234,348,0 chrIX 66906 . G T 3005 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=23.48;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3038,324,0 chrIX 66928 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=21.85;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2699,291,0 chrIX 66931 . A G 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=125;Dels=0.00;FS=6.863;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=-0.344;QD=20.93;ReadPosRankSum=2.410;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2649,288,0 chrIX 66948 . A G 2847 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=21.09;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2880,315,0 chrIX 67219 . T C 2499 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=22.51;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2532,279,0 chrIX 67222 . C T 2308 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=19.90;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2341,258,0 chrIX 67321 . T C 2411 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.34;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2444,273,0 chrIX 67390 . G A 1763 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=20.74;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1796,195,0 chrIX 67392 . T C 1624 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=83;Dels=0.00;FS=3.040;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=-0.797;QD=19.57;ReadPosRankSum=2.390;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:2,80:83:99:1657,186,0 chrIX 67395 . A T 1668 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.332;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;MQRankSum=-0.536;QD=19.86;ReadPosRankSum=1.691;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1701,186,0 chrIX 67456 . T C 1487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=90;Dels=0.00;FS=7.360;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=-0.882;QD=16.52;ReadPosRankSum=2.394;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:2,86:90:99:1520,174,0 chrIX 67458 . T C 1532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=3.632;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=-1.386;QD=17.02;ReadPosRankSum=1.655;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1565,171,0 chrIX 67689 . T C 3389.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.37;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3389,375,0 chrIX 67951 . C T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.01;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3434,369,0 chrIX 67994 . C T 2872 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3804;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.26;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2905,312,0 chrIX 68072 . G T 2665 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.2927;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=21.67;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2698,294,0 chrIX 68100 . C T 2701 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=20.94;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2734,294,0 chrIX 68113 . T C 2546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=135;Dels=0.00;FS=2.989;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;MQRankSum=0.847;QD=18.86;ReadPosRankSum=2.413;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2579,291,0 chrIX 68123 . C A 2640 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=18.72;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2673,297,0 chrIX 68175 . G A 2120 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=19.10;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2153,231,0 chrIX 68186 . C T 2024 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;QD=19.46;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2057,222,0 chrIX 68243 . C T 1895 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=4.054;HaplotypeScore=3.8889;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;MQRankSum=-1.051;QD=16.20;ReadPosRankSum=1.584;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1928,213,0 chrIX 68244 . T C 1830 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;MQRankSum=0.350;QD=15.78;ReadPosRankSum=2.407;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:1863,210,0 chrIX 68247 . T C 1953 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=122;Dels=0.00;FS=5.383;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;MQRankSum=-1.273;QD=16.01;ReadPosRankSum=2.893;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:1986,213,0 chrIX 68317 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=8.3149;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=21.03;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3230,348,0 chrIX 68384 . A T 122.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.746;DP=194;Dels=0.00;FS=13.215;HaplotypeScore=179.3600;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=0.083;QD=0.63;ReadPosRankSum=2.891;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:18:155,18,0 chrIX 68461 . A G 3781.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.01;FS=0.000;HaplotypeScore=30.9537;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=21.48;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3781,420,0 chrIX 68518 . A G 3042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.224;DP=149;Dels=0.00;FS=9.064;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;MQRankSum=0.652;QD=20.42;ReadPosRankSum=3.400;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:4,145:149:99:3075,354,0 chrIX 68548 . A G 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=-0.420;QD=18.52;ReadPosRankSum=1.711;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3015,324,0 chrIX 68567 . C T 2828 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=17.35;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2861,303,0 chrIX 68604 . C T 2839 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=18.56;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2872,300,0 chrIX 68739 . C T 2339 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.9412;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.49;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2372,261,0 chrIX 68780 . T C 1784 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=22.30;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1817,201,0 chrIX 68787 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=22.96;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1732,189,0 chrIX 68814 . C T 1752 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=21.90;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1785,198,0 chrIX 68857 . A G 1762 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=22.59;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1795,198,0 chrIX 68873 . C G 1768 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=19.43;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1801,201,0 chrIX 68898 . C A 1934 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.23;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1967,219,0 chrIX 68935 . G A 1568 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.48;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1601,171,0 chrIX 69033 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=21.80;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1341,147,0 chrIX 69064 . T C 1441 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=19.21;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1474,159,0 chrIX 69071 . A G 1492 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=19.89;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1525,168,0 chrIX 69138 . T C 2506 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.2159;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.64;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2539,276,0 chrIX 69429 . C T 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=131;Dels=0.00;FS=7.648;HaplotypeScore=9.6131;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.514;QD=24.00;ReadPosRankSum=1.245;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:1,127:131:99:3177,336,0 chrIX 69624 . C A 683 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=17.97;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:78:716,78,0 chrIX 69651 . A G 320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=38;Dels=0.00;FS=15.247;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;MQRankSum=-1.602;QD=8.42;ReadPosRankSum=2.321;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:2,36:38:39:353,39,0 chrIX 69658 . T C 337 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.92;MQ0=0;QD=9.11;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:42:370,42,0 chrIX 69704 . A G 625 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=50.8146;MLEAC=2;MLEAF=1.00;MQ=36.54;MQ0=0;QD=9.33;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,66:67:75:658,75,0 chrIX 69730 . G A 1747 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=18.39;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1780,192,0 chrIX 69770 . T G 1858 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=20.64;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1891,213,0 chrIX 69789 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=20.35;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2109,240,0 chrIX 69815 . A G 2230 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=22.08;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2263,243,0 chrIX 69835 . T C 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=-0.863;QD=21.04;ReadPosRankSum=2.335;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2284,249,0 chrIX 69890 . T G 3763.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.1880;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=25.09;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3763,411,0 chrIX 69950 . A G 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=173;Dels=0.00;FS=3.033;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=1.593;QD=19.76;ReadPosRankSum=2.307;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3419,378,0 chrIX 69958 . T C 3385.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=21.56;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3385,366,0 chrIX 70038 . T C 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=130;Dels=0.00;FS=3.324;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.685;QD=20.41;ReadPosRankSum=1.705;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2686,294,0 chrIX 70073 . T C 3913.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=15.8106;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.59;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3913,441,0 chrIX 70145 . G A 3649.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=19.51;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3649,402,0 chrIX 70241 . T C 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=138;Dels=0.00;FS=2.920;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-1.804;QD=23.29;ReadPosRankSum=2.378;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3247,363,0 chrIX 70296 . A G 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.8496;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=1.480;QD=22.42;ReadPosRankSum=1.711;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3700,411,0 chrIX 70443 . G A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.9990;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.13;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4204,444,0 chrIX 70461 . G A 4368.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.11;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4368,462,0 chrIX 70505 . G A 3810.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.82;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3810,423,0 chrIX 70537 . C T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.01;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3389,372,0 chrIX 70556 . T C 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.872;QD=20.97;ReadPosRankSum=1.660;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3074,336,0 chrIX 70598 . G A 3936.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.2811;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.11;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:3936,432,0 chrIX 70904 . C T 4716.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=24.9946;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.44;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:4716,507,0 chrIX 70962 . G A 5648.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.68;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5648,607,0 chrIX 71094 . A G 3821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.2313;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.356;QD=21.59;ReadPosRankSum=1.692;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3821,417,0 chrIX 71177 . G A 4287.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=22.80;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4287,468,0 chrIX 71189 . A G 4170.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=22.79;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4170,456,0 chrIX 71236 . T C 2459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=141;Dels=0.00;FS=2.991;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;MQRankSum=-0.186;QD=17.44;ReadPosRankSum=2.326;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:2,137:141:99:2492,267,0 chrIX 71237 . T C 2353 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=17.05;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2386,264,0 chrIX 71252 . C A 2531 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=16.76;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,146:151:99:2564,288,0 chrIX 71366 . T A 5733.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=15.4619;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.69;SB=-3.220e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5733,607,0 chrIX 71501 . C T 3721.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=20.56;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3721,402,0 chrIX 71504 . T C 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=4.607;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=0.742;QD=20.90;ReadPosRankSum=1.694;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3825,414,0 chrIX 71693 . A G 4101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=4.672;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.431;QD=23.71;ReadPosRankSum=1.712;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4101,450,0 chrIX 71768 . G A 3125 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.98;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3158,339,0 chrIX 71795 . G A 3131 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.01;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3164,345,0 chrIX 71830 . G A 3668.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.45;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:3668,393,0 chrIX 72015 . C G 4513.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.79;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4513,507,0 chrIX 72065 . G A 3524.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=18.74;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3524,399,0 chrIX 72072 . T C 3815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.176;DP=197;Dels=0.00;FS=9.083;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-1.139;QD=19.37;ReadPosRankSum=3.336;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:4,193:197:99:3815,411,0 chrIX 72176 . G A 6018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.187;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=14.8032;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.718;QD=23.60;ReadPosRankSum=0.314;SB=-3.166e+03 GT:AD:DP:GQ:PL 1/1:1,253:255:99:6018,646,0 chrIX 72311 . G A 5705.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=23.97;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5705,610,0 chrIX 72464 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.3814;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.74;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3250,351,0 chrIX 72564 . C T 3352.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1346;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=21.91;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3352,360,0 chrIX 72570 . G T 2999 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=19.86;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3032,336,0 chrIX 72581 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=20.25;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2666,291,0 chrIX 72621 . C T 2398 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=18.73;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2431,261,0 chrIX 72648 . G A 2054 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=18.02;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2087,225,0 chrIX 72672 . G A 1950 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=16.25;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1983,222,0 chrIX 72684 . T G 2003 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=15.90;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2036,222,0 chrIX 72697 . C T 1822 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=14.46;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1855,201,0 chrIX 72757 . T A 2757 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=18.76;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2790,297,0 chrIX 72762 . T C 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=-1.465;QD=18.80;ReadPosRankSum=2.952;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:3,142:145:99:2759,303,0 chrIX 72784 . T C 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.913;DP=178;Dels=0.00;FS=4.666;HaplotypeScore=4.7161;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=-0.971;QD=19.39;ReadPosRankSum=4.147;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:6,172:178:99:3451,384,0 chrIX 72998 . A G 4322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=206;Dels=0.00;FS=2.576;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.564;QD=20.98;ReadPosRankSum=2.966;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:3,202:206:99:4322,480,0 chrIX 73076 . A G 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=157;Dels=0.00;FS=2.907;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.658;QD=22.87;ReadPosRankSum=2.418;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:3591,399,0 chrIX 73100 . G A 3032 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.15;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3065,330,0 chrIX 73117 . T C 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.217;QD=23.22;ReadPosRankSum=1.624;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3029,324,0 chrIX 73178 . T C 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=3.126;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.595;QD=23.11;ReadPosRankSum=1.687;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3512,387,0 chrIX 73727 . C T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.94;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3791,411,0 chrIX 74340 . A G 2924 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.78;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2957,321,0 chrIX 74541 . G A 2987 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.49;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3020,336,0 chrIX 74562 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=3.650;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-0.617;QD=23.02;ReadPosRankSum=1.708;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3384,363,0 chrIX 74610 . C T 2510 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.41;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2543,276,0 chrIX 74808 . T C 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.367;QD=20.50;ReadPosRankSum=1.654;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2760,309,0 chrIX 75045 . T C 4130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=167;Dels=0.00;FS=7.465;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.110;QD=24.73;ReadPosRankSum=2.405;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4130,453,0 chrIX 75152 . G A 4530.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.89;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4530,486,0 chrIX 75437 . G A 4786.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.35;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4786,511,0 chrIX 75750 . C T 3987.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=16.3808;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.91;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3987,426,0 chrIX 75847 . T C 2482 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=17.60;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2515,270,0 chrIX 75941 . A G 1738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=1.199;QD=22.00;ReadPosRankSum=1.688;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1771,192,0 chrIX 76001 . A G 1283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=76;Dels=0.00;FS=4.279;HaplotypeScore=5.2257;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=0.393;QD=16.88;ReadPosRankSum=1.594;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1316,144,0 chrIX 76002 . T A 1291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=77;Dels=0.00;FS=2.748;HaplotypeScore=6.0144;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=0.304;QD=16.77;ReadPosRankSum=2.258;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1324,144,0 chrIX 76269 . G C 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.3295;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=0.631;QD=19.48;ReadPosRankSum=0.011;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3013,333,0 chrIX 76283 . A G 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=1.307;QD=18.59;ReadPosRankSum=1.665;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2915,321,0 chrIX 76340 . C T 2743 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.1805;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=19.88;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2776,300,0 chrIX 76381 . G A 3098 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.99;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3131,354,0 chrIX 76900 . C T 4166.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.83;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4166,447,0 chrIX 76912 . A G 4594.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.47;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4594,507,0 chrIX 77020 . C T 5664.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.60;SB=-3.264e+03 GT:AD:DP:GQ:PL 1/1:0,273:275:99:5664,624,0 chrIX 77152 . G A 5716.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.82;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5716,616,0 chrIX 77265 . C T 4290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.087;DP=189;Dels=0.00;FS=4.291;HaplotypeScore=10.4056;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.511;QD=22.70;ReadPosRankSum=0.018;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4290,453,0 chrIX 77291 . A G 4679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.0350;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.117;QD=22.39;ReadPosRankSum=1.715;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4679,519,0 chrIX 77331 . G A 4774.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=23.40;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4774,513,0 chrIX 77427 . A T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.71;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3770,408,0 chrIX 77531 . A G 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=3.303;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-1.548;QD=22.26;ReadPosRankSum=1.712;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3785,411,0 chrIX 77546 . T C 3672.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=20.98;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3672,402,0 chrIX 77585 . G T 3869.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.03;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3869,420,0 chrIX 77604 . C T 4054.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=20.68;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4054,438,0 chrIX 77663 . C T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.9807;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.16;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3656,387,0 chrIX 77692 . G T 3070 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.47;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3103,330,0 chrIX 77697 . A G 2999 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.26;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3032,324,0 chrIX 77788 . G A 4155.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.88;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4155,441,0 chrIX 78274 . A G 6038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=267;Dels=0.00;FS=2.611;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.176;QD=22.61;ReadPosRankSum=2.422;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:2,264:267:99:6038,660,0 chrIX 78328 . T C 4953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=223;Dels=0.00;FS=7.423;HaplotypeScore=9.0648;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.152;QD=22.21;ReadPosRankSum=1.716;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,220:223:99:4953,534,0 chrIX 78415 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0791;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.900;QD=21.13;ReadPosRankSum=2.387;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3338,369,0 chrIX 78442 . C T 2894 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.44;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2927,312,0 chrIX 78571 . C T 2977 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.40;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3010,330,0 chrIX 79060 . T G 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=133;Dels=0.00;FS=3.044;HaplotypeScore=10.2734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.160;QD=22.80;ReadPosRankSum=2.187;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:2,129:133:99:3066,339,0 chrIX 79417 . G A 2344 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.44;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2377,255,0 chrIX 79502 . A G 1782 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1815,207,0 chrIX 79550 . T C 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=3.900;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.390;QD=20.53;ReadPosRankSum=1.647;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1696,183,0 chrIX 79636 . T C 1998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=88;Dels=0.00;FS=4.873;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.564;QD=22.70;ReadPosRankSum=1.692;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,85:88:99:2031,225,0 chrIX 79786 . G A 1740 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.22;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1773,192,0 chrIX 79822 . G A 1546 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.16;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1579,168,0 chrIX 79846 . G C 1276 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.63;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1309,144,0 chrIX 79996 . A G 1185 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.70;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1218,132,0 chrIX 80696 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.5449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3264,375,0 chrIX 81401 . T C 3902.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.5859;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.17;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3902,423,0 chrIX 81995 . G A 2862 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.36;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2895,309,0 chrIX 82157 . T C 3202 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.1621;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.21;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3235,360,0 chrIX 82232 . C T 3097 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=18.43;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3130,339,0 chrIX 82237 . G A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=18.88;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,173:178:99:3361,357,0 chrIX 82457 . T C 3296.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.54;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3296,375,0 chrIX 82610 . C T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5917;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=21.43;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3622,387,0 chrIX 82619 . G A 3108 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=18.72;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3141,345,0 chrIX 82622 . C T 2876 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=17.97;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2909,315,0 chrIX 82673 . T C 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=-0.310;QD=20.31;ReadPosRankSum=1.712;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3534,393,0 chrIX 82694 . A G 3918.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=20.30;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3918,438,0 chrIX 82733 . A G 4806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.226;DP=209;Dels=0.00;FS=12.253;HaplotypeScore=18.5885;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.690;QD=23.00;ReadPosRankSum=3.418;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:4,205:209:99:4806,525,0 chrIX 82899 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.5415;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=17.98;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,195:200:99:3596,408,0 chrIX 82900 . A C 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=205;Dels=0.00;FS=3.231;HaplotypeScore=6.8528;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;MQRankSum=0.154;QD=18.48;ReadPosRankSum=1.646;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:1,201:205:99:3788,408,0 chrIX 83061 . C T 3113 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7545;MLEAC=2;MLEAF=1.00;MQ=36.43;MQ0=0;QD=17.69;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3146,333,0 chrIX 83067 . T C 2905 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=129.4816;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;QD=16.99;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:2938,318,0 chrIX 83076 . G A 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=31.30;MQ0=0;QD=0.11;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:139:6:47,6,0 chrIX 83082 . T A 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;QD=0.12;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:6:47,6,0 chrIX 83087 . T C 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=4.798;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.01;MQ0=0;MQRankSum=-1.602;QD=14.49;ReadPosRankSum=1.710;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2351,261,0 chrIX 83104 . A C 2345 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=37.50;MQ0=0;QD=14.57;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2378,258,0 chrIX 83517 . C G 5330.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.88;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5330,606,0 chrIX 83571 . T C 4928.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.7452;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.20;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4928,549,0 chrIX 83625 . G A 4529.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.11;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4529,481,0 chrIX 83676 . A G 4529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.634;DP=203;Dels=0.00;FS=7.871;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.068;QD=22.31;ReadPosRankSum=3.812;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:5,198:203:99:4529,483,0 chrIX 83721 . T G 4108.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.38;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4108,459,0 chrIX 84138 . T C 4767.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.4415;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.45;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4767,534,0 chrIX 85177 . C T 2970 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3003,330,0 chrIX 85300 . T C 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.1978;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.944;QD=22.32;ReadPosRankSum=1.649;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3728,402,0 chrIX 85309 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=17.86;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3268,357,0 chrIX 85680 . C T 5113.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.6356;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.52;SB=-2.925e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5113,552,0 chrIX 85758 . G A 5624.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.6625;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.68;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5624,613,0 chrIX 85821 . C T 5292.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=18.9283;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.33;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5292,570,0 chrIX 85860 . T C 5197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=237;Dels=0.00;FS=9.595;HaplotypeScore=19.4062;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.030;QD=21.93;ReadPosRankSum=2.970;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:3,234:237:99:5197,576,0 chrIX 86294 . C T 3413.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.45;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3413,381,0 chrIX 86586 . T G 3328.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.3476;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.49;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3328,378,0 chrIX 86720 . C T 4215.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.68;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4215,462,0 chrIX 86751 . C T 3670.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=15.2408;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.52;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3670,390,0 chrIX 86925 . A G 4952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.032;QD=22.51;ReadPosRankSum=1.700;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:1,217:220:99:4952,555,0 chrIX 87121 . G A 3792.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.6358;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3792,405,0 chrIX 87283 . C T 4133.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4133,441,0 chrIX 87581 . C G 4494.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=22.4108;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.61;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4494,498,0 chrIX 87642 . C T 3114 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.99;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3147,354,0 chrIX 88151 . T C 2743 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=13.8168;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.27;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2776,303,0 chrIX 88444 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=20.39;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3405,363,0 chrIX 88448 . T C 3103 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.64;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,154:158:99:3136,342,0 chrIX 90515 . C T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.6679;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.98;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4045,432,0 chrIX 90546 . G A 4227.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.48;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4227,459,0 chrIX 90617 . A G 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.083;QD=24.16;ReadPosRankSum=1.711;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4010,444,0 chrIX 90986 . A G 2623 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.21;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2656,288,0 chrIX 91112 . G C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=20.70;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3332,372,0 chrIX 91116 . T G 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=160;Dels=0.00;FS=2.981;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=-0.552;QD=20.93;ReadPosRankSum=2.403;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3349,372,0 chrIX 91130 . C T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=20.90;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3448,372,0 chrIX 91187 . T C 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=0.083;QD=21.39;ReadPosRankSum=1.711;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3593,402,0 chrIX 91211 . C T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=23.25;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4045,429,0 chrIX 91232 . T C 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=164;Dels=0.00;FS=2.972;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-0.052;QD=21.51;ReadPosRankSum=2.390;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3527,381,0 chrIX 91277 . C T 3667.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=20.26;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3667,390,0 chrIX 91316 . G A 4022.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.0473;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=22.60;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4022,429,0 chrIX 91343 . A G 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=187;Dels=0.00;FS=3.026;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=-0.905;QD=19.21;ReadPosRankSum=2.370;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:3592,399,0 chrIX 91352 . A G 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.272;QD=18.45;ReadPosRankSum=1.676;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3414,381,0 chrIX 91579 . C A 4854.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.0351;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=23.11;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4854,517,0 chrIX 91661 . C T 5797.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=18.4715;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.38;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:5797,624,0 chrIX 91709 . A T 5614.01 SnpCluster AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=23.01;SB=-2.965e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5614,612,0 chrIX 91712 . T C 5384.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-0.029;QD=22.16;ReadPosRankSum=1.689;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:1,241:243:99:5384,606,0 chrIX 91718 . A G 5218.01 SnpCluster AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=21.47;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5218,579,0 chrIX 91834 . T A 5958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=263;Dels=0.00;FS=6.549;HaplotypeScore=22.3612;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.098;QD=22.65;ReadPosRankSum=2.412;SB=-3.313e+03 GT:AD:DP:GQ:PL 1/1:2,261:263:99:5958,640,0 chrIX 91967 . T C 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=5.509;HaplotypeScore=6.4427;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=0.686;QD=22.21;ReadPosRankSum=1.714;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:4309,474,0 chrIX 91970 . A G 4138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=1.259;QD=21.01;ReadPosRankSum=2.399;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:4138,453,0 chrIX 92024 . T G 3841.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.6949;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.34;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3841,435,0 chrIX 92242 . C A 3986.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.9968;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.59;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3986,426,0 chrIX 92420 . T C 4451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=195;Dels=0.00;FS=3.590;HaplotypeScore=16.0779;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.343;QD=22.83;ReadPosRankSum=1.714;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:1,191:195:99:4451,486,0 chrIX 92809 . C T 2882 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.35;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2915,312,0 chrIX 92857 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.45;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2957,327,0 chrIX 92947 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=7.4988;MLEAC=2;MLEAF=1.00;MQ=43.73;MQ0=0;QD=17.48;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1519,162,0 chrIX 92948 . A T 1406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.675;DP=84;Dels=0.00;FS=2.612;HaplotypeScore=7.4988;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;MQRankSum=-0.458;QD=16.74;ReadPosRankSum=2.531;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:3,81:84:99:1439,159,0 chrIX 92997 . G A 1109 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=0;QD=13.20;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1142,129,0 chrIX 92998 . A C 1132 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=37.23;MQ0=0;QD=13.16;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1165,129,0 chrIX 92999 . A T 1107 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=37.23;MQ0=0;QD=12.87;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1140,126,0 chrIX 93013 . G T 1415 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.11;MQ0=0;QD=13.74;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1448,156,0 chrIX 93053 . C A 1482 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=15.12;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1515,165,0 chrIX 93202 . G A 4216.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=23.82;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4216,450,0 chrIX 93433 . C T 5804.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=11.8366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5804,628,0 chrIX 93577 . T C 6994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=16.6320;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.777;QD=23.16;ReadPosRankSum=1.709;SB=-3.049e+03 GT:AD:DP:GQ:PL 1/1:1,300:302:99:6994,777,0 chrIX 94251 . T G 5603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=19.8571;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.448;QD=21.55;ReadPosRankSum=1.719;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:1,259:260:99:5603,618,0 chrIX 94563 . T C 5513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=242;Dels=0.00;FS=5.876;HaplotypeScore=22.5813;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.635;QD=22.78;ReadPosRankSum=2.888;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:3,239:242:99:5513,600,0 chrIX 94863 . C T 1843 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.5240;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.40;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1876,210,0 chrIX 94886 . T C 1506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=81;Dels=0.00;FS=9.112;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-1.763;QD=18.59;ReadPosRankSum=2.356;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:2,77:81:99:1539,171,0 chrIX 94907 . A G 1578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=81;Dels=0.00;FS=2.984;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=1.111;QD=19.48;ReadPosRankSum=2.389;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1611,183,0 chrIX 94908 . T A 1611 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=20.39;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1644,183,0 chrIX 95341 . C G 4469.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4469,507,0 chrIX 95590 . C T 7445.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=18.5741;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.86;SB=-3.963e+03 GT:AD:DP:GQ:PL 1/1:0,312:312:99:7445,799,0 chrIX 97661 . A T 4218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.028;DP=201;Dels=0.00;FS=1.762;HaplotypeScore=20.5669;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.436;QD=20.99;ReadPosRankSum=3.534;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:6,194:201:99:4218,468,0 chrIX 97730 . A G 4475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.5658;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.460;QD=21.21;ReadPosRankSum=1.715;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:1,206:211:99:4475,498,0 chrIX 97988 . C T 3739.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=19.0196;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.26;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3739,402,0 chrIX 98050 . G A 4202.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.4173;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.29;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4202,450,0 chrIX 98109 . G A 3208 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.76;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3241,348,0 chrIX 98144 . G A 2871 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.8836;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.61;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2904,321,0 chrIX 98294 . C A 1892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.469;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.2103;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.657;QD=20.57;ReadPosRankSum=1.280;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1925,210,0 chrIX 98366 . A G 1398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.5242;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-1.488;QD=19.69;ReadPosRankSum=1.683;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1431,156,0 chrIX 98402 . A G 974 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=19.10;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1007,111,0 chrIX 98414 . T C 1004 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.92;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1037,114,0 chrIX 98623 . A G 1054 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=12.601;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;MQRankSum=-0.971;QD=11.58;ReadPosRankSum=1.656;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1087,129,0 chrIX 98626 . G A 926 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=10.89;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:959,108,0 chrIX 98632 . A G 728 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.25;MQ0=0;QD=8.77;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:93:761,93,0 chrIX 98639 . G C 390 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;QD=5.49;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:54:423,54,0 chrIX 98640 . A T 374 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.24;MQ0=0;QD=5.19;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:51:407,51,0 chrIX 98641 . A G 374 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=5.12;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:51:407,51,0 chrIX 98932 . A G 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.9188;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=1.274;QD=22.36;ReadPosRankSum=1.703;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2761,303,0 chrIX 99321 . T C 2788 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.23;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2821,315,0 chrIX 99686 . C T 2683 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.87;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2716,309,0 chrIX 100355 . A G 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.039;QD=23.01;ReadPosRankSum=1.706;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3093,333,0 chrIX 100415 . T C 2131 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=18.53;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2164,243,0 chrIX 100423 . T C 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=118;Dels=0.00;FS=4.517;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;MQRankSum=0.358;QD=18.22;ReadPosRankSum=1.702;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2183,234,0 chrIX 100450 . T C 2085 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=17.52;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2118,231,0 chrIX 100465 . G A 2328 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=18.19;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2361,255,0 chrIX 100595 . A G 1969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=1.089;QD=20.30;ReadPosRankSum=1.696;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2002,219,0 chrIX 101006 . T C 3187 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3073;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=21.53;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3220,348,0 chrIX 101012 . C T 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=-0.012;QD=21.08;ReadPosRankSum=-0.521;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3089,333,0 chrIX 101027 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=20.12;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2407,261,0 chrIX 101030 . G A 2198 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=19.62;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2231,246,0 chrIX 101270 . A T 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=166;Dels=0.00;FS=4.208;HaplotypeScore=6.3737;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=-1.336;QD=20.31;ReadPosRankSum=1.607;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3372,363,0 chrIX 101294 . T C 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-0.549;QD=19.12;ReadPosRankSum=1.711;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3112,348,0 chrIX 101315 . C A 3013 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=17.12;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3046,321,0 chrIX 101321 . T C 2865 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=15.92;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2898,318,0 chrIX 101379 . G C 4267.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=19.13;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4267,468,0 chrIX 101388 . C T 4827.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=18.86;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:4827,511,0 chrIX 101395 . T G 5241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.184;DP=257;Dels=0.00;FS=5.209;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=0.777;QD=20.39;ReadPosRankSum=2.848;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:3,254:257:99:5241,564,0 chrIX 101559 . T C 4606.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=17.5744;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.50;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:4606,522,0 chrIX 101723 . C T 5643.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=14.4722;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.29;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,263:265:99:5643,613,0 chrIX 101771 . A C 5023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=235;Dels=0.00;FS=3.006;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.632;QD=21.37;ReadPosRankSum=2.376;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:2,233:235:99:5023,570,0 chrIX 101828 . C T 4250.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.1017;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.10;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,180:184:99:4250,456,0 chrIX 101954 . G A 4813.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.88;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4813,528,0 chrIX 102011 . T C 4450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=208;Dels=0.00;FS=3.031;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.682;QD=21.39;ReadPosRankSum=2.426;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:2,205:208:99:4450,483,0 chrIX 102310 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.73;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3228,360,0 chrIX 102495 . A C 1937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;MQRankSum=-1.058;QD=16.99;ReadPosRankSum=1.671;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:1970,219,0 chrIX 102496 . T A 1966 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=17.40;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1999,216,0 chrIX 102597 . C T 2113 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=21.78;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2146,231,0 chrIX 102974 . C T 3175 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.31;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3208,351,0 chrIX 103157 . T C 3319.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3319,363,0 chrIX 103273 . G A 2706 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.33;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2739,294,0 chrIX 103303 . G A 2419 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=4.3425;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.33;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2452,276,0 chrIX 103318 . A G 2760 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=18.52;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:2793,309,0 chrIX 103339 . T G 2831 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.26;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2864,321,0 chrIX 103474 . C G 2509 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.63;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2542,288,0 chrIX 103838 . A T 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=16.7949;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.061;QD=21.53;ReadPosRankSum=1.683;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3069,327,0 chrIX 103927 . T C 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=170;Dels=0.00;FS=6.098;HaplotypeScore=10.9357;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.545;QD=23.51;ReadPosRankSum=2.421;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3997,432,0 chrIX 104128 . G A 2470 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.1641;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2503,273,0 chrIX 104728 . C T 2016 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2049,228,0 chrIX 104822 . G T 3316.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=21.96;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3316,366,0 chrIX 104826 . T C 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-0.228;QD=22.32;ReadPosRankSum=1.709;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3393,372,0 chrIX 104962 . T G 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=167;Dels=0.00;FS=2.906;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.257;QD=24.16;ReadPosRankSum=2.391;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4035,450,0 chrIX 105090 . T C 3173 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.68;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3206,351,0 chrIX 105352 . T C 425 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.037;DP=23;Dels=0.00;FS=10.607;HaplotypeScore=3.5076;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=1.364;QD=18.48;ReadPosRankSum=-0.709;SB=-3.132e-03 GT:AD:DP:GQ:PL 1/1:2,21:23:51:458,51,0 chrIX 105355 . T C 296 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.085;DP=22;Dels=0.00;FS=10.414;HaplotypeScore=3.5076;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.171;QD=13.45;ReadPosRankSum=0.057;SB=-8.563e-03 GT:AD:DP:GQ:PL 1/1:2,20:22:36:329,36,0 chrIX 105420 . A G 78.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.067;DP=9;Dels=0.00;FS=6.532;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;MQRankSum=1.666;QD=8.72;ReadPosRankSum=1.666;SB=2.60 GT:AD:DP:GQ:PL 1/1:2,7:9:12:111,12,0 chrIX 106629 . G A 8174.01 filter AC=2;AF=1.00;AN=2;DP=404;Dels=0.00;FS=0.000;HaplotypeScore=34.4953;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.23;SB=-4.500e+03 GT:AD:DP:GQ:PL 1/1:0,403:404:99:8174,895,0 chrIX 106806 . A G 4432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.184;DP=240;Dels=0.00;FS=4.893;HaplotypeScore=21.5317;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.981;QD=18.47;ReadPosRankSum=3.395;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:4,235:240:99:4432,492,0 chrIX 110073 . A G 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=153;Dels=0.00;FS=2.984;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.887;QD=21.71;ReadPosRankSum=2.417;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:3322,360,0 chrIX 110559 . G A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3281,363,0 chrIX 111631 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.98;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3547,375,0 chrIX 112854 . T A 4869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=222;Dels=0.00;FS=3.999;HaplotypeScore=19.6321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.400;QD=21.93;ReadPosRankSum=1.685;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:4869,552,0 chrIX 113159 . C T 4230.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=16.7518;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.15;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4230,453,0 chrIX 113517 . G A 3196 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.31;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3229,345,0 chrIX 113518 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.99;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3244,348,0 chrIX 113753 . G A 4047.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.81;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4047,438,0 chrIX 113799 . C A 3897.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=25.31;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3897,411,0 chrIX 113838 . C T 3373.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3373,381,0 chrIX 114177 . C T 2906 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.88;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2939,315,0 chrIX 114240 . G T 2331 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.63;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2364,255,0 chrIX 114270 . T C 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=113;Dels=0.00;FS=9.749;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.009;QD=19.00;ReadPosRankSum=2.920;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2180,246,0 chrIX 114691 . A T 3111 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3144,339,0 chrIX 114791 . A G 3161 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.41;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3194,345,0 chrIX 114980 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.41;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2722,294,0 chrIX 115136 . C T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.82;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3743,408,0 chrIX 115770 . G A 1887 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1920,204,0 chrIX 116694 . C A 4120.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.9132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4120,441,0 chrIX 117012 . T A 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=122;Dels=0.00;FS=2.753;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.837;QD=23.43;ReadPosRankSum=2.349;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2891,309,0 chrIX 117336 . A T 3325.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.88;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3325,354,0 chrIX 117411 . T C 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.702;DP=169;Dels=0.03;FS=1.652;HaplotypeScore=34.7535;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.115;QD=15.38;ReadPosRankSum=-0.717;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:5,159:164:99:2633,250,0 chrIX 117516 . C G 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=171;Dels=0.00;FS=3.879;HaplotypeScore=9.0247;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.375;QD=24.32;ReadPosRankSum=-0.415;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4158,434,0 chrIX 117852 . C T 3360.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3360,378,0 chrIX 118750 . A G 3647.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3647,399,0 chrIX 119687 . G A 2024 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2057,222,0 chrIX 120214 . T A 4403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=176;Dels=0.00;FS=3.212;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.650;QD=25.02;ReadPosRankSum=1.693;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4403,474,0 chrIX 121460 . A G 4551.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.21;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4551,504,0 chrIX 121603 . G C 3335.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.8471;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.52;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3335,378,0 chrIX 121652 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.06;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3459,381,0 chrIX 122282 . G T 2769 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.95;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2802,303,0 chrIX 122620 . A T 2764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.777;QD=21.76;ReadPosRankSum=1.705;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2797,303,0 chrIX 122940 . A T 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=146;Dels=0.00;FS=7.202;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.591;QD=23.57;ReadPosRankSum=2.416;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3441,372,0 chrIX 124530 . G A 4969.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4969,529,0 chrIX 124830 . A G 5084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.710;QD=23.21;ReadPosRankSum=1.684;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:1,216:219:99:5084,552,0 chrIX 125289 . T G 4039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=3.774;HaplotypeScore=15.8480;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.764;QD=21.48;ReadPosRankSum=1.695;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4039,456,0 chrIX 125455 . C G 3902.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=16.7801;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.43;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3902,420,0 chrIX 126375 . A G 4687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=196;Dels=0.00;FS=6.595;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.470;QD=23.91;ReadPosRankSum=2.412;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4687,519,0 chrIX 126566 . T C 6820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=283;Dels=0.00;FS=2.602;HaplotypeScore=15.1204;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.361;QD=24.10;ReadPosRankSum=2.310;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:2,280:283:99:6820,739,0 chrIX 127022 . A G 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=173;Dels=0.00;FS=2.914;HaplotypeScore=16.1368;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.632;QD=21.90;ReadPosRankSum=2.421;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3789,420,0 chrIX 127496 . A G 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=151;Dels=0.00;FS=3.038;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.932;QD=23.57;ReadPosRankSum=2.417;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3559,387,0 chrIX 127636 . T C 3173 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=20.87;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3206,348,0 chrIX 127637 . T C 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=153;Dels=0.00;FS=6.012;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=-0.691;QD=20.39;ReadPosRankSum=2.954;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3153,351,0 chrIX 127749 . C T 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.754;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.1330;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=1.185;QD=20.80;ReadPosRankSum=1.401;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4348,486,0 chrIX 127774 . G A 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.7645;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-1.592;QD=20.99;ReadPosRankSum=0.997;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4157,444,0 chrIX 127868 . C T 3552.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=16.8067;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.40;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3552,393,0 chrIX 128729 . C T 581.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;DP=330;Dels=0.00;FS=2.713;HaplotypeScore=684.3521;MLEAC=1;MLEAF=0.500;MQ=57.07;MQ0=1;MQRankSum=-0.676;QD=1.76;ReadPosRankSum=-8.085;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:276,52:330:99:611,0,683 chrIX 129697 . C T 3987.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3987,421,0 chrIX 129784 . A G 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.250;DP=144;Dels=0.00;FS=5.262;HaplotypeScore=5.9386;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.214;QD=22.22;ReadPosRankSum=3.348;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:4,139:144:99:3232,351,0 chrIX 129806 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=143;Dels=0.00;FS=14.410;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-2.475;QD=22.61;ReadPosRankSum=2.907;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:3,137:143:99:3269,354,0 chrIX 130004 . T A 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=13.6119;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.912;QD=23.89;ReadPosRankSum=1.600;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3163,336,0 chrIX 130049 . G T 2474 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.34;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2507,279,0 chrIX 130259 . T C 2128 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=20.27;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2161,237,0 chrIX 130270 . T C 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=111;Dels=0.00;FS=9.515;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-0.191;QD=21.63;ReadPosRankSum=2.846;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2434,264,0 chrIX 130336 . C T 2810 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=23.03;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2843,318,0 chrIX 130461 . T C 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=1.139;QD=21.70;ReadPosRankSum=1.701;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2442,270,0 chrIX 130480 . G A 2958 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.48;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2991,318,0 chrIX 130537 . C T 2521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.409;DP=148;Dels=0.01;FS=2.077;HaplotypeScore=8.0242;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=0.450;QD=17.03;ReadPosRankSum=2.332;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:5,142:147:99:2554,275,0 chrIX 130538 . A C 2539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=150;Dels=0.03;FS=0.000;HaplotypeScore=15.2110;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;MQRankSum=-0.409;QD=16.93;ReadPosRankSum=1.660;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2572,303,0 chrIX 130586 . G A 2492 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.03;FS=0.000;HaplotypeScore=14.0705;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=15.87;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2525,276,0 chrIX 130684 . G T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.95;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3924,417,0 chrIX 130712 . G A 4126.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.58;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4126,441,0 chrIX 130771 . A T 3683.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=23.46;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3683,396,0 chrIX 130852 . T C 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=3.528;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-1.148;QD=23.07;ReadPosRankSum=1.654;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4106,468,0 chrIX 130876 . C T 4290.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.83;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4290,457,0 chrIX 131485 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.71;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4179,447,0 chrIX 131490 . T C 3710.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=17.58;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:3710,417,0 chrIX 131557 . T C 2461 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=15.98;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2494,273,0 chrIX 131563 . C A 2432 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=15.90;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2465,267,0 chrIX 131617 . G A 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=2.880;HaplotypeScore=10.2524;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.171;QD=18.97;ReadPosRankSum=-0.985;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:2917,321,0 chrIX 131703 . A G 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=138;Dels=0.00;FS=2.665;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.117;QD=19.18;ReadPosRankSum=2.414;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:2680,297,0 chrIX 131737 . C T 2423 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.19;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2456,261,0 chrIX 131883 . C A 3513.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.11;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3513,387,0 chrIX 131911 . C G 2785 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.26;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2818,321,0 chrIX 131983 . A G 2377 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.32;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2410,264,0 chrIX 132151 . T A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.28;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3306,363,0 chrIX 132304 . A C 3384.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.17;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3384,378,0 chrIX 132543 . T C 4612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.412;QD=24.02;ReadPosRankSum=1.714;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:1,188:192:99:4612,510,0 chrIX 132615 . G A 4581.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.7374;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.64;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4581,519,0 chrIX 132907 . T C 3419.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8348;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.92;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3419,372,0 chrIX 133353 . C T 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.4691;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=1.712;QD=21.82;ReadPosRankSum=0.953;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3709,378,0 chrIX 133368 . C T 3466.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.13;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3466,390,0 chrIX 133668 . G A 3930.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=23.39;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3930,426,0 chrIX 133698 . A G 3730.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=23.61;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3730,405,0 chrIX 133869 . T C 2718 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=23.03;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2751,294,0 chrIX 133870 . T C 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.739;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=0.408;QD=21.35;ReadPosRankSum=1.591;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2681,300,0 chrIX 133892 . C G 2471 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.76;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2504,273,0 chrIX 134280 . A G 2487 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.21;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2520,270,0 chrIX 134461 . C T 2735 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.98;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2768,300,0 chrIX 134472 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.54;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3031,324,0 chrIX 135075 . A G 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.4717;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.849;QD=20.36;ReadPosRankSum=2.422;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3584,399,0 chrIX 135273 . C T 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=145;Dels=0.00;FS=1.871;HaplotypeScore=3.6854;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=-1.346;QD=19.79;ReadPosRankSum=3.350;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:4,141:145:99:2902,318,0 chrIX 135274 . T A 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=145;Dels=0.00;FS=1.871;HaplotypeScore=3.6854;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=-0.308;QD=19.55;ReadPosRankSum=3.326;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:4,141:145:99:2868,318,0 chrIX 135361 . T C 2883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.664;QD=21.68;ReadPosRankSum=1.680;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2916,327,0 chrIX 135454 . C T 3026 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.83;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3059,330,0 chrIX 135647 . G A 3751.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,161:167:99:3751,417,0 chrIX 135991 . G C 2597 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=22.39;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2630,288,0 chrIX 136028 . C T 2950 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=23.41;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2983,321,0 chrIX 136044 . T A 2681 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=23.11;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2714,288,0 chrIX 136068 . G T 2043 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=20.43;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2076,234,0 chrIX 136075 . A G 1801 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=19.79;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1834,210,0 chrIX 136100 . T C 1399 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=19.16;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1432,153,0 chrIX 136134 . G A 905 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=17.75;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:938,99,0 chrIX 136172 . T C 735 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=16.33;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,43:45:84:768,84,0 chrIX 136210 . A T 373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.809;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=25.2066;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;MQRankSum=-1.568;QD=12.03;ReadPosRankSum=2.292;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:2,29:31:45:406,45,0 chrIX 136248 . C A 89.26 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=7.44;SB=-7.924e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:122,15,0 chrIX 136619 . A G 1060 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.04;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1093,126,0 chrIX 136762 . G A 3501.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=25.37;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3501,372,0 chrIX 136845 . T C 2802 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=24.37;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2835,306,0 chrIX 136846 . T C 2731 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.75;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2764,306,0 chrIX 136891 . C T 1799 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.44;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1832,195,0 chrIX 136968 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.2390;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.49;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1795,195,0 chrIX 137062 . A G 1710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.700;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5404;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=1.470;QD=20.36;ReadPosRankSum=2.917;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:3,81:84:99:1743,186,0 chrIX 137119 . G A 79.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=4.7365;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=11.36;SB=-8.255e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:112,12,0 chrIX 137160 . A T 102.26 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=7.30;SB=-5.526e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:135,15,0 chrIX 137334 . C T 1067 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.71;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1100,117,0 chrIX 137403 . T C 1824 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.24;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1857,207,0 chrIX 137460 . G T 2083 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=21.47;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2116,225,0 chrIX 137636 . A T 2636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=114;Dels=0.00;FS=7.751;HaplotypeScore=6.3648;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.183;QD=23.12;ReadPosRankSum=2.407;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2669,288,0 chrIX 137742 . A G 1470 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.85;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1503,171,0 chrIX 137929 . A G 1127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=80;Dels=0.00;FS=4.677;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-0.147;QD=14.09;ReadPosRankSum=2.095;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:5,75:80:99:1160,135,0 chrIX 138293 . C G 2425 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=18.95;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2458,264,0 chrIX 138305 . T C 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=125;Dels=0.00;FS=2.844;HaplotypeScore=7.4627;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=0.030;QD=17.72;ReadPosRankSum=2.410;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2248,249,0 chrIX 138346 . T C 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.223;QD=17.90;ReadPosRankSum=1.707;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2557,282,0 chrIX 138356 . A G 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=3.769;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-1.600;QD=17.15;ReadPosRankSum=1.706;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2279,249,0 chrIX 138455 . A C 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=0.807;QD=18.42;ReadPosRankSum=1.706;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2464,273,0 chrIX 138495 . C T 2734 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=19.25;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2767,297,0 chrIX 138636 . T A 2705 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.5821;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.73;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2738,297,0 chrIX 138740 . C T 3208 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.75;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3241,363,0 chrIX 138792 . T A 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=177;Dels=0.00;FS=3.615;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.343;QD=22.58;ReadPosRankSum=1.693;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3997,435,0 chrIX 139233 . G T 2100 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;QD=22.34;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2133,231,0 chrIX 139242 . A T 1959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=3.887;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=0;MQRankSum=-1.173;QD=21.06;ReadPosRankSum=1.658;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1992,219,0 chrIX 139314 . G C 593 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.76;MQ0=0;QD=7.51;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:66:626,66,0 chrIX 139367 . A G 952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=79;Dels=0.00;FS=2.704;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;MQRankSum=0.172;QD=12.05;ReadPosRankSum=2.388;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:985,111,0 chrIX 139370 . A G 974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=78;Dels=0.00;FS=5.345;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=2.095;QD=12.49;ReadPosRankSum=3.341;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:4,74:78:99:1007,114,0 chrIX 139397 . G C 1229 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;QD=15.96;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1262,144,0 chrIX 139404 . G T 1258 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.47;MQ0=0;QD=16.34;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1291,141,0 chrIX 139442 . A G 993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.41;MQ0=0;MQRankSum=-1.732;QD=12.57;ReadPosRankSum=1.557;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1026,114,0 chrIX 139448 . C A 993 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=0;QD=12.90;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1026,111,0 chrIX 139458 . T C 957 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=3.623;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.35;MQ0=0;MQRankSum=-1.641;QD=12.59;ReadPosRankSum=1.687;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:990,111,0 chrIX 139461 . T C 939 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;QD=12.52;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:972,114,0 chrIX 139466 . T A 1009 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=7.206;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;MQRankSum=-2.318;QD=13.45;ReadPosRankSum=2.318;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1042,117,0 chrIX 139513 . T A 1594 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;QD=19.20;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1627,177,0 chrIX 141013 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.70;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3071,342,0 chrIX 141022 . A G 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-1.468;QD=20.03;ReadPosRankSum=1.679;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2657,285,0 chrIX 141321 . T G 3853.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.5956;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.40;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,168:172:99:3853,426,0 chrIX 141911 . A G 2504 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.5052;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.56;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2537,291,0 chrIX 142542 . T C 2671 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2704,306,0 chrIX 142906 . C T 3686.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3686,396,0 chrIX 143092 . G A 4147.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4147,447,0 chrIX 143302 . C T 3836.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.6544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3836,405,0 chrIX 145805 . T A 3709.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.8525;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.34;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3709,411,0 chrIX 146082 . A G 2987 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3020,327,0 chrIX 146308 . G A 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.429;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.2904;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;MQRankSum=0.455;QD=24.03;ReadPosRankSum=-1.277;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3844,392,0 chrIX 146901 . A G 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3583;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;MQRankSum=2.470;QD=16.44;ReadPosRankSum=3.484;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:6,164:170:99:2827,309,0 chrIX 146913 . T C 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;DP=161;Dels=0.00;FS=2.371;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=0;MQRankSum=3.404;QD=14.47;ReadPosRankSum=0.443;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:4,156:161:99:2362,237,0 chrIX 146919 . A G 1951 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;QD=12.67;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:1984,225,0 chrIX 146928 . C T 1210.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;DP=147;Dels=0.00;FS=35.755;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=41.62;MQ0=0;MQRankSum=-2.903;QD=8.23;ReadPosRankSum=3.986;SB=-8.780e+02 GT:AD:DP:GQ:PL 0/1:23,124:147:99:1240,0,222 chrIX 146932 . G A 2111 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6857;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=13.71;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:2144,234,0 chrIX 146985 . T G 2040.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=48.6387;MLEAC=1;MLEAF=0.500;MQ=55.04;MQ0=1;MQRankSum=-0.585;QD=7.03;ReadPosRankSum=-0.423;SB=-1.319e+03 GT:AD:DP:GQ:PL 0/1:135,155:290:99:2070,0,2328 chrIX 147145 . T G 4350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=192;Dels=0.00;FS=2.767;HaplotypeScore=28.2264;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=0.122;QD=22.66;ReadPosRankSum=2.424;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4350,483,0 chrIX 147414 . C T 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=144;Dels=0.00;FS=4.651;HaplotypeScore=18.7746;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.933;QD=20.36;ReadPosRankSum=-0.157;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2965,318,0 chrIX 147523 . G C 3893.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.45;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3893,417,0 chrIX 148596 . A G 2516 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.66;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2549,279,0 chrIX 149536 . G T 5188.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5188,564,0 chrIX 149761 . C T 4736.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.04;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4736,510,0 chrIX 149978 . C G 3946.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.6906;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.94;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3946,444,0 chrIX 150052 . G C 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=159;Dels=0.00;FS=3.480;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.044;QD=22.48;ReadPosRankSum=1.244;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:3575,384,0 chrIX 150261 . T C 4367.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.11;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4367,495,0 chrIX 150599 . C T 3989.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.25;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3989,447,0 chrIX 151326 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.67;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2731,288,0 chrIX 151731 . A G 4590.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.07;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4590,510,0 chrIX 151788 . T G 4438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.324;DP=193;Dels=0.00;FS=5.247;HaplotypeScore=12.4840;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.737;QD=22.99;ReadPosRankSum=3.288;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:4,189:193:99:4438,477,0 chrIX 152118 . G A 5479.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.4836;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=25.13;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5479,583,0 chrIX 152485 . G C 3988.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=23.7980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,167:173:99:3988,450,0 chrIX 153463 . A G 4002.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.4593;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.13;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4002,444,0 chrIX 153593 . G A 4741.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=23.94;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4741,519,0 chrIX 153725 . A G 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=4.279;HaplotypeScore=12.0554;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.531;QD=21.95;ReadPosRankSum=1.709;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3293,354,0 chrIX 154095 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.68;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2700,288,0 chrIX 154387 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.07;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3685,393,0 chrIX 154430 . A G 3845.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.4466;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.30;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3845,408,0 chrIX 154922 . A G 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.325;DP=181;Dels=0.00;FS=7.968;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.883;QD=21.76;ReadPosRankSum=3.286;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:4,177:181:99:3938,435,0 chrIX 155033 . A T 2783 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.09;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2816,312,0 chrIX 155480 . A C 3862.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.55;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3862,429,0 chrIX 155631 . G A 2995 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.7398;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.02;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3028,333,0 chrIX 155654 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.370;QD=22.94;ReadPosRankSum=1.637;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3326,357,0 chrIX 155792 . G A 2207 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.99;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2240,240,0 chrIX 156015 . A G 3831.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=25.04;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3831,417,0 chrIX 156029 . G A 3643.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.0755;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.77;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3643,414,0 chrIX 157808 . T G 5672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.9604;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.225;QD=22.42;ReadPosRankSum=1.677;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:5672,630,0 chrIX 160170 . C T 4570.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=21.9878;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.77;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4570,510,0 chrIX 161935 . C G 4542.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.03;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4542,489,0 chrIX 164017 . C T 4052.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=24.86;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4052,429,0 chrIX 164332 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2582,279,0 chrIX 165039 . C G 2089 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.10;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2122,222,0 chrIX 166175 . C T 1885 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.86;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1918,207,0 chrIX 166301 . A G 1571 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.89;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1604,180,0 chrIX 172231 . G A 3395.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3395,369,0 chrIX 173732 . G A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.50;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3504,372,0 chrIX 174307 . C T 4993.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.0381;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.00;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:4993,552,0 chrIX 174345 . T A 3954.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=16.2746;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.47;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3954,435,0 chrIX 174391 . T A 3940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=179;Dels=0.00;FS=3.390;HaplotypeScore=12.1387;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.997;QD=22.01;ReadPosRankSum=1.713;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3940,420,0 chrIX 174966 . C G 130.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;DP=92;Dels=0.00;FS=32.733;HaplotypeScore=21.4079;MLEAC=1;MLEAF=0.500;MQ=38.71;MQ0=0;MQRankSum=1.333;QD=1.41;ReadPosRankSum=0.711;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,10:92:99:160,0,182 chrIX 174967 . A C 135.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;DP=90;Dels=0.00;FS=29.654;HaplotypeScore=15.5781;MLEAC=1;MLEAF=0.500;MQ=38.50;MQ0=0;MQRankSum=2.189;QD=1.50;ReadPosRankSum=-3.199;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,10:90:99:165,0,212 chrIX 175120 . C A 958 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=0;QD=18.08;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:991,108,0 chrIX 175126 . A C 898 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;QD=17.96;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:931,105,0 chrIX 175167 . C T 748 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=16.62;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,43:44:90:781,90,0 chrIX 175175 . G C 875 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=19.02;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:908,99,0 chrIX 175751 . A T 3834.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=19.97;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3834,408,0 chrIX 175755 . T G 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;MQRankSum=-1.714;QD=18.62;ReadPosRankSum=1.641;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:1,190:194:99:3613,402,0 chrIX 175811 . G A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.3864;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.12;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:3766,414,0 chrIX 176421 . G T 5102.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.73;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5102,547,0 chrIX 176578 . C T 5953.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=20.2807;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.25;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5953,640,0 chrIX 177466 . C T 94.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.222;DP=20;Dels=0.05;FS=10.386;HaplotypeScore=4.7097;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=0.400;QD=4.71;ReadPosRankSum=-1.733;SB=-7.226e+01 GT:AD:DP:GQ:PL 1/1:8,10:19:15:127,15,0 chrIX 177469 . A C 69.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.818;DP=17;Dels=0.00;FS=10.843;HaplotypeScore=3.9210;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;MQRankSum=1.107;QD=4.09;ReadPosRankSum=-1.780;SB=-7.251e+01 GT:AD:DP:GQ:PL 1/1:9,8:17:12:102,12,0 chrIX 177586 . G A 3185 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=24.50;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3218,348,0 chrIX 177598 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=21.96;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2646,282,0 chrIX 177853 . T C 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=3.298;HaplotypeScore=10.0654;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-1.177;QD=17.29;ReadPosRankSum=1.643;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2730,312,0 chrIX 178160 . C T 3711.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.5090;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.79;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3711,399,0 chrIX 179273 . A G 5694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=321;Dels=0.00;FS=2.564;HaplotypeScore=6.8312;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=-0.149;QD=17.74;ReadPosRankSum=2.427;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:2,319:321:99:5694,630,0 chrIX 179275 . C T 5948.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=4.5719;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=18.08;SB=-2.844e+03 GT:AD:DP:GQ:PL 1/1:0,329:329:99:5948,645,0 chrIX 179673 . G A 1382 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=21.26;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1415,150,0 chrIX 179763 . G A 1026 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=16.55;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1059,117,0 chrIX 179764 . A G 1012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.299;QD=16.06;ReadPosRankSum=2.211;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:2,60:63:99:1045,114,0 chrIX 180009 . T A 4007.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.02;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4007,435,0 chrIX 180412 . G A 2255 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.68;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2288,246,0 chrIX 180570 . A G 2888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=4.310;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=1.075;QD=24.90;ReadPosRankSum=1.702;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2921,318,0 chrIX 180792 . A T 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.769;DP=148;Dels=0.00;FS=3.040;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.556;QD=20.95;ReadPosRankSum=1.420;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3133,318,0 chrIX 180798 . C T 2886 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.11;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2919,321,0 chrIX 181236 . A G 2154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=96;Dels=0.00;FS=9.737;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.232;QD=22.44;ReadPosRankSum=2.927;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:3,93:96:99:2187,234,0 chrIX 181677 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3246,357,0 chrIX 182402 . G A 2996 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3029,327,0 chrIX 182483 . C T 2881 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2914,318,0 chrIX 182837 . G A 2680 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.15;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2713,297,0 chrIX 182939 . C T 2833 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.03;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2866,309,0 chrIX 183064 . T G 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;DP=148;Dels=0.00;FS=5.867;HaplotypeScore=9.8678;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=1.476;QD=21.72;ReadPosRankSum=2.952;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:3,143:148:99:3248,363,0 chrIX 183089 . G A 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=137;Dels=0.00;FS=3.514;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-1.252;QD=22.90;ReadPosRankSum=1.707;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3170,339,0 chrIX 183268 . T C 129.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.006;DP=107;Dels=0.00;FS=4.245;HaplotypeScore=11.3896;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;MQRankSum=-0.201;QD=1.21;ReadPosRankSum=4.081;SB=-3.911e+02 GT:AD:DP:GQ:PL 1/1:16,91:107:21:162,21,0 chrIX 183280 . A G 1221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=95;Dels=0.00;FS=2.837;HaplotypeScore=12.8965;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-2.106;QD=12.85;ReadPosRankSum=2.397;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:2,91:95:99:1254,138,0 chrIX 183332 . A G 2271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=1.700;QD=21.22;ReadPosRankSum=1.667;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2304,258,0 chrIX 183373 . T C 1824 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.0664;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.21;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1857,210,0 chrIX 183430 . T C 2029 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.45;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2062,225,0 chrIX 183552 . G T 1321 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.32;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1354,144,0 chrIX 183567 . T C 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=3.917;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-1.180;QD=20.93;ReadPosRankSum=1.682;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1477,159,0 chrIX 183795 . A C 2448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=97;Dels=0.00;FS=4.416;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.553;QD=25.24;ReadPosRankSum=1.585;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,93:97:99:2481,267,0 chrIX 183943 . A G 4538.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.35;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4538,495,0 chrIX 184053 . C T 3709.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3709,402,0 chrIX 185452 . G A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.18;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3579,399,0 chrIX 188629 . G A 4959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=248;Dels=0.00;FS=3.656;HaplotypeScore=17.6825;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=-1.183;QD=20.00;ReadPosRankSum=0.563;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:1,245:248:99:4959,552,0 chrIX 188822 . C G 4227.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3138;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=23.23;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4227,462,0 chrIX 188845 . G A 4074.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=23.55;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4074,441,0 chrIX 188870 . A T 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=179;Dels=0.00;FS=5.915;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=-1.612;QD=20.69;ReadPosRankSum=2.893;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:3704,393,0 chrIX 188877 . T C 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=181;Dels=0.00;FS=6.752;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=0.948;QD=20.60;ReadPosRankSum=2.409;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3728,414,0 chrIX 188919 . A T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.25;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4316,465,0 chrIX 189195 . G A 4284.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.53;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4284,468,0 chrIX 189202 . T C 4105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=198;Dels=0.00;FS=6.495;HaplotypeScore=4.7791;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-1.445;QD=20.73;ReadPosRankSum=2.338;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4105,468,0 chrIX 189307 . A G 4138.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=21.66;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4138,447,0 chrIX 189322 . A G 3783.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=20.79;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3783,411,0 chrIX 189332 . C T 3510.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=19.94;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3510,378,0 chrIX 189347 . T C 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=4.771;HaplotypeScore=3.7585;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;MQRankSum=-0.451;QD=16.27;ReadPosRankSum=1.711;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2718,312,0 chrIX 189367 . T C 2801 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=16.87;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2834,312,0 chrIX 189470 . C T 3285.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=23.46;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3285,351,0 chrIX 189692 . A G 3082 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.01;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3115,351,0 chrIX 189696 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=23.29;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3284,351,0 chrIX 189725 . C T 3031 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.45;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3064,324,0 chrIX 189777 . A G 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.579;QD=21.57;ReadPosRankSum=2.325;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3009,333,0 chrIX 189843 . A G 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3451;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=0.053;QD=21.99;ReadPosRankSum=2.359;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3606,399,0 chrIX 189896 . G A 3129 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=22.67;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3162,342,0 chrIX 190035 . A C 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=151;Dels=0.00;FS=9.090;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.958;QD=23.10;ReadPosRankSum=2.417;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3488,375,0 chrIX 190120 . G A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=24.84;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3800,399,0 chrIX 190142 . G A 2491 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=18.18;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2524,279,0 chrIX 190151 . A G 2453 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=17.65;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2486,270,0 chrIX 190174 . T C 2530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=154;Dels=0.00;FS=3.027;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-2.019;QD=16.43;ReadPosRankSum=2.402;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:2563,294,0 chrIX 190296 . G A 4668.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.6278;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.46;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4668,507,0 chrIX 190373 . C T 3286.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=23.14;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3286,351,0 chrIX 190526 . C T 2853 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.78;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2886,318,0 chrIX 190788 . C A 3047 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.74;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3080,327,0 chrIX 190795 . C G 2856 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.80;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2889,315,0 chrIX 190867 . G T 2793 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.65;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2826,297,0 chrIX 190898 . G A 3030 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.12;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3063,330,0 chrIX 191063 . C T 2718 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.27;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2751,303,0 chrIX 191204 . A G 3092 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.60;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3125,348,0 chrIX 191432 . A G 2838 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.00;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2871,312,0 chrIX 191501 . G A 2694 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.56;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2727,303,0 chrIX 191573 . T C 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=149;Dels=0.00;FS=2.876;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.701;QD=22.46;ReadPosRankSum=2.351;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3347,369,0 chrIX 191635 . C T 3984.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8636;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.38;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3984,426,0 chrIX 192113 . G A 2666 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.02;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2699,282,0 chrIX 192137 . C T 2746 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.09;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2779,294,0 chrIX 192374 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=17.4487;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.66;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3308,357,0 chrIX 192413 . A G 3079 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.47;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3112,342,0 chrIX 192670 . T C 4602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.3140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.160;QD=23.84;ReadPosRankSum=2.386;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4602,507,0 chrIX 192753 . C T 4593.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.1014;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4593,495,0 chrIX 193203 . T C 6048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=284;Dels=0.00;FS=3.363;HaplotypeScore=16.9075;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=0.061;QD=21.30;ReadPosRankSum=1.720;SB=-3.426e+03 GT:AD:DP:GQ:PL 1/1:1,281:284:99:6048,678,0 chrIX 193298 . T C 4124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=204;Dels=0.00;FS=9.366;HaplotypeScore=20.9462;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.315;QD=20.22;ReadPosRankSum=2.802;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:3,195:204:99:4124,450,0 chrIX 193744 . A G 3862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.316;QD=21.10;ReadPosRankSum=1.637;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3862,423,0 chrIX 193815 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.773;DP=164;Dels=0.00;FS=2.566;HaplotypeScore=16.9690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.663;QD=21.56;ReadPosRankSum=2.957;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3536,381,0 chrIX 194026 . A G 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=4.136;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.150;QD=23.59;ReadPosRankSum=1.705;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3052,330,0 chrIX 194170 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3133,339,0 chrIX 194267 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.66;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2871,303,0 chrIX 194587 . C T 2525 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.2865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,114:118:99:2558,285,0 chrIX 194686 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3261,351,0 chrIX 195072 . G A 3169 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.4289;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.56;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3202,345,0 chrIX 195082 . T C 2937 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.40;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2970,336,0 chrIX 195274 . C G 1505 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=18.35;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1538,171,0 chrIX 195510 . G A 1451 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=25.02;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1484,159,0 chrIX 195521 . T A 1390 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=24.39;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1423,153,0 chrIX 195532 . C T 1375 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.18;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1408,150,0 chrIX 195634 . A G 1372 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.11;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1405,159,0 chrIX 195661 . T C 1419 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.18;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1452,162,0 chrIX 195787 . G T 3278.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.75;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3278,348,0 chrIX 195861 . A G 3337.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.67;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3337,363,0 chrIX 195922 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.38;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3142,336,0 chrIX 195961 . C T 3321.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.3453;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.56;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3321,363,0 chrIX 196033 . T C 3850.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.88;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3850,432,0 chrIX 196067 . T A 4053.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.6284;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.16;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4053,441,0 chrIX 196201 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=15.1006;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.540;QD=21.57;ReadPosRankSum=-0.360;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,153:159:99:3430,381,0 chrIX 196228 . T G 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.1040;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-0.284;QD=21.74;ReadPosRankSum=2.326;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3142,345,0 chrIX 196248 . C G 2922 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=137.8767;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=19.48;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2955,324,0 chrIX 196321 . C G 2856 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.01;FS=0.000;HaplotypeScore=168.3759;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=15.78;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:2889,318,0 chrIX 196366 . G A 2483 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.03;FS=0.000;HaplotypeScore=64.1190;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=16.23;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2516,273,0 chrIX 196407 . T C 2663 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=110.0699;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=21.48;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2696,303,0 chrIX 197092 . G A 1463 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;QD=21.84;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1496,162,0 chrIX 197177 . C T 1824 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=20.97;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1857,207,0 chrIX 197241 . T A 1710 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=24.08;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1743,192,0 chrIX 197377 . C T 992 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=18.37;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1025,114,0 chrIX 197446 . G A 1230 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.36;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1263,132,0 chrIX 197448 . A G 1162 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.13;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1195,132,0 chrIX 197490 . G A 788 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.70;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:90:821,90,0 chrIX 197558 . A G 658 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;QD=14.95;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:81:691,81,0 chrIX 197560 . C T 684 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;QD=15.55;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:78:717,78,0 chrIX 197573 . T A 728 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=15.83;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:84:761,84,0 chrIX 197782 . G T 1938 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=25.17;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1971,213,0 chrIX 197821 . A G 1519 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.73;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1552,171,0 chrIX 197823 . C T 1585 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.33;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1618,171,0 chrIX 197949 . G A 4705.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.76;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4705,504,0 chrIX 198073 . A G 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=150;Dels=0.00;FS=3.507;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.264;QD=21.09;ReadPosRankSum=1.709;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3197,366,0 chrIX 198256 . T A 4403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=188;Dels=0.00;FS=5.695;HaplotypeScore=15.0351;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.909;QD=23.42;ReadPosRankSum=2.898;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:3,184:188:99:4403,486,0 chrIX 198411 . C G 3995.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.3944;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.92;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:3995,453,0 chrIX 198924 . A G 3900.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.1702;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.53;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3900,420,0 chrIX 199233 . C T 4575.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.46;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4575,495,0 chrIX 199368 . C T 4784.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.92;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4784,522,0 chrIX 199445 . T C 3180 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.49;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3213,354,0 chrIX 199623 . T A 1369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.612;DP=86;Dels=0.00;FS=11.941;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=-0.588;QD=15.92;ReadPosRankSum=2.777;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1402,156,0 chrIX 199628 . C T 1384 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=16.48;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1417,156,0 chrIX 200213 . C T 3966.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3966,423,0 chrIX 200298 . G A 2605 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.89;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2638,285,0 chrIX 200326 . C T 2233 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.9566;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=21.27;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2266,249,0 chrIX 200335 . C T 2296 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=21.06;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2329,255,0 chrIX 200457 . T C 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=3.043;HaplotypeScore=4.9410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.356;QD=22.39;ReadPosRankSum=2.385;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2586,279,0 chrIX 201027 . T C 1516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=80;Dels=0.00;FS=12.446;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.407;QD=18.95;ReadPosRankSum=2.387;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:2,76:80:99:1549,171,0 chrIX 201057 . T C 1290 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.43;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1323,147,0 chrIX 201167 . C G 1387 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1420,153,0 chrIX 201525 . T C 3690.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=22.23;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3690,411,0 chrIX 201537 . A G 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;MQRankSum=-1.014;QD=20.26;ReadPosRankSum=2.405;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3363,375,0 chrIX 201555 . A G 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=167;Dels=0.00;FS=11.550;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;MQRankSum=-0.073;QD=18.04;ReadPosRankSum=2.958;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:3,163:167:99:3046,339,0 chrIX 201561 . A G 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=168;Dels=0.00;FS=7.842;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=-0.596;QD=17.09;ReadPosRankSum=2.347;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:2904,324,0 chrIX 201607 . G C 3380.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.1520;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.20;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3380,366,0 chrIX 201645 . A G 4622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=194;Dels=0.00;FS=3.021;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;MQRankSum=0.373;QD=23.82;ReadPosRankSum=2.361;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4622,495,0 chrIX 201729 . C T 3993.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.9347;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.91;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3993,438,0 chrIX 201814 . T C 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=182;Dels=0.00;FS=6.437;HaplotypeScore=7.8809;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.236;QD=22.87;ReadPosRankSum=2.342;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4162,459,0 chrIX 202086 . G A 2352 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2385,261,0 chrIX 202271 . A G 2549 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2582,279,0 chrIX 202393 . G A 1950 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1983,225,0 chrIX 202633 . A T 3702.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3702,402,0 chrIX 202695 . T G 5170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=239;Dels=0.00;FS=5.485;HaplotypeScore=11.8649;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.667;QD=21.63;ReadPosRankSum=2.971;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:3,235:239:99:5170,594,0 chrIX 202909 . C G 5397.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=16.8314;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.58;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5397,585,0 chrIX 202963 . A G 4961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=224;Dels=0.00;FS=10.143;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.041;QD=22.15;ReadPosRankSum=2.950;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:3,218:224:99:4961,558,0 chrIX 203308 . T G 2218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=90;Dels=0.00;FS=9.071;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.629;QD=24.64;ReadPosRankSum=2.340;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2251,243,0 chrIX 203415 . A G 2139 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=97.7812;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.18;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2172,237,0 chrIX 204156 . A T 3753.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.07;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3753,411,0 chrIX 204609 . A T 4320.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.5040;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.10;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4320,465,0 chrIX 204746 . C T 4399.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.37;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4399,474,0 chrIX 204891 . A G 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=3.900;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=1.014;QD=22.06;ReadPosRankSum=1.706;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3033,345,0 chrIX 204908 . T C 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.853;QD=23.02;ReadPosRankSum=1.706;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3118,336,0 chrIX 204990 . C T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=21.17;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3323,357,0 chrIX 205055 . T G 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=160;Dels=0.00;FS=7.890;HaplotypeScore=18.1630;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;MQRankSum=0.817;QD=19.54;ReadPosRankSum=2.418;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3160,354,0 chrIX 205156 . A C 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;MQRankSum=-1.195;QD=20.54;ReadPosRankSum=1.702;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2416,276,0 chrIX 205159 . A G 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=109;Dels=0.00;FS=6.306;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.74;MQ0=0;MQRankSum=0.305;QD=20.22;ReadPosRankSum=2.405;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2237,252,0 chrIX 205192 . G A 1017 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=37.19;MQ0=0;QD=17.53;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1050,120,0 chrIX 205209 . A T 615 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.15;MQ0=0;QD=17.57;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:69:648,69,0 chrIX 205211 . C T 564 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.09;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:66:597,66,0 chrIX 205213 . T A 567 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.18;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:66:600,66,0 chrIX 205217 . A C 551 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=1;MQRankSum=1.418;QD=16.21;ReadPosRankSum=1.628;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:2,32:34:63:584,63,0 chrIX 211064 . A G 2963 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=24.29;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2996,333,0 chrIX 211150 . T C 4105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-1.100;QD=22.68;ReadPosRankSum=1.713;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4105,462,0 chrIX 211179 . T C 4599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=206;Dels=0.00;FS=5.352;HaplotypeScore=11.1920;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.128;QD=22.33;ReadPosRankSum=2.926;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:3,201:206:99:4599,507,0 chrIX 211211 . T C 4952.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.0958;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.25;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4952,540,0 chrIX 211519 . C T 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.463;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=19.7599;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.654;QD=22.56;ReadPosRankSum=-1.674;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4061,432,0 chrIX 211652 . A G 5272.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.86;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5272,591,0 chrIX 212171 . A G 1545 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.81;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1578,177,0 chrIX 212200 . A G 1211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.3086;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.433;QD=18.63;ReadPosRankSum=1.678;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1244,135,0 chrIX 212310 . G A 2018 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=23.20;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2051,228,0 chrIX 212523 . A G 3411.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.8770;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.19;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3411,384,0 chrIX 212552 . G C 3510.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.25;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3510,390,0 chrIX 213122 . G A 4707.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.6183;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.65;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4707,516,0 chrIX 213299 . A T 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.577;QD=21.38;ReadPosRankSum=1.676;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2663,285,0 chrIX 213605 . C T 4397.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:4397,468,0 chrIX 213953 . T C 4520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=200;Dels=0.00;FS=6.038;HaplotypeScore=22.7623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.508;QD=22.60;ReadPosRankSum=2.964;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:3,191:200:99:4520,498,0 chrIX 214397 . G A 4354.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.7432;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.10;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4354,483,0 chrIX 214484 . C T 6238.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.52;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:6238,676,0 chrIX 214643 . A G 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=2.222;QD=22.83;ReadPosRankSum=1.229;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3470,387,0 chrIX 214890 . A T 3751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=150;Dels=0.00;FS=5.229;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;MQRankSum=-0.577;QD=25.01;ReadPosRankSum=1.709;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3751,396,0 chrIX 215257 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3596,384,0 chrIX 215593 . G C 4622.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4622,510,0 chrIX 215732 . T C 4167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.2869;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.916;QD=21.37;ReadPosRankSum=1.714;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,190:195:99:4167,477,0 chrIX 215993 . C T 4125.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.92;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4125,441,0 chrIX 216129 . A G 5678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.277;DP=248;Dels=0.00;FS=12.801;HaplotypeScore=20.6749;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.349;QD=22.90;ReadPosRankSum=3.376;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:4,243:248:99:5678,618,0 chrIX 216326 . A G 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.289;QD=20.69;ReadPosRankSum=1.660;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3013,330,0 chrIX 216335 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.12;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3073,351,0 chrIX 222311 . A T 4476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=181;Dels=0.00;FS=6.490;HaplotypeScore=7.4282;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.405;QD=24.73;ReadPosRankSum=2.355;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4476,477,0 chrIX 224703 . T C 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.594;QD=21.40;ReadPosRankSum=1.677;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2708,306,0 chrIX 224976 . G A 1965 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1998,225,0 chrIX 225885 . C T 1537 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1570,171,0 chrIX 226380 . T A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=37.6938;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=0;QD=0.44;SB=-2.578e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:6:50,6,0 chrIX 226381 . T G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=37.6938;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;QD=0.45;SB=-1.958e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:6:50,6,0 chrIX 226583 . C T 2037 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=24.84;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2070,222,0 chrIX 227301 . A T 2792 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2825,300,0 chrIX 232236 . A C 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=125;Dels=0.00;FS=5.371;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.676;QD=23.07;ReadPosRankSum=1.704;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2917,324,0 chrIX 232460 . A G 7072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=309;Dels=0.00;FS=10.472;HaplotypeScore=15.6424;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.070;QD=22.89;ReadPosRankSum=2.409;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:2,304:309:99:7072,807,0 chrIX 233049 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.0191;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.15;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2229,252,0 chrIX 238349 . G A 4103.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.18;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4103,438,0 chrIX 238662 . A G 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=17.4759;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.271;QD=20.32;ReadPosRankSum=1.714;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:1,191:195:99:3963,429,0 chrIX 239129 . T A 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=143;Dels=0.00;FS=10.891;HaplotypeScore=11.9140;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.546;QD=22.18;ReadPosRankSum=3.902;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:6,137:143:99:3205,357,0 chrIX 240673 . G T 4521.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4521,492,0 chrIX 241041 . A C 1519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.337;DP=196;Dels=0.00;FS=31.663;HaplotypeScore=30.7448;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=1.210;QD=7.75;ReadPosRankSum=0.611;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:34,162:196:99:1552,166,0 chrIX 241170 . C G 1989 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=17.00;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2022,225,0 chrIX 241892 . A G 4230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.8983;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.564;QD=22.74;ReadPosRankSum=1.713;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4230,489,0 chrIX 242419 . G C 3680.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.86;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3680,390,0 chrIX 242535 . G A 2895 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=19.69;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2928,315,0 chrIX 242543 . A G 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.920;QD=18.41;ReadPosRankSum=1.541;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2721,297,0 chrIX 242713 . C T 2728 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.14;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2761,294,0 chrIX 242863 . T C 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=134;Dels=0.00;FS=2.748;HaplotypeScore=7.3821;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.176;QD=22.77;ReadPosRankSum=2.302;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3084,348,0 chrIX 242937 . G A 4724.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.60;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4724,501,0 chrIX 243202 . A G 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=202;Dels=0.00;FS=6.002;HaplotypeScore=8.4621;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.126;QD=19.26;ReadPosRankSum=2.905;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:3,197:202:99:3891,447,0 chrIX 243230 . A G 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=193;Dels=0.00;FS=9.586;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.661;QD=21.49;ReadPosRankSum=2.891;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:4148,450,0 chrIX 243264 . T C 4382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.208;DP=202;Dels=0.00;FS=8.975;HaplotypeScore=23.1655;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.716;QD=21.69;ReadPosRankSum=3.417;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:4,197:202:99:4382,474,0 chrIX 243482 . A C 4608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=213;Dels=0.00;FS=2.996;HaplotypeScore=13.8844;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.343;QD=21.63;ReadPosRankSum=2.392;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4608,498,0 chrIX 243933 . C T 1694 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1727,186,0 chrIX 244502 . G A 3189 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.76;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3222,348,0 chrIX 244618 . C T 3940.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.04;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3940,438,0 chrIX 244765 . T G 2641 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.80;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2674,297,0 chrIX 244863 . C T 2097 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.89;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,107:111:99:2130,243,0 chrIX 244901 . G A 2605 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2638,297,0 chrIX 245022 . T C 3404.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.16;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3404,366,0 chrIX 245220 . G A 3860.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.11;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3860,414,0 chrIX 245431 . G A 3836.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=16.0550;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.97;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3836,420,0 chrIX 245567 . G C 3450.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.26;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3450,381,0 chrIX 245601 . A T 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=7.536;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=2.198;QD=22.28;ReadPosRankSum=2.420;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3698,396,0 chrIX 245693 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.4346;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=21.30;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3450,378,0 chrIX 245762 . T C 2268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.047;DP=113;Dels=0.00;FS=2.310;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.428;QD=20.07;ReadPosRankSum=3.784;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:6,104:113:99:2301,255,0 chrIX 245765 . C T 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.163;QD=20.76;ReadPosRankSum=1.667;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:1,105:111:99:2337,252,0 chrIX 245832 . C T 1937 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.61;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1970,207,0 chrIX 245930 . G A 779 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;QD=19.00;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:87:812,87,0 chrIX 245931 . G A 784 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=0;QD=20.10;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:87:817,87,0 chrIX 245932 . G A 761 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.03;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:87:794,87,0 chrIX 245951 . A G 451 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.11;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:51:484,51,0 chrIX 245966 . T C 176.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.178;DP=22;Dels=0.00;FS=2.570;HaplotypeScore=8.4596;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=0;MQRankSum=-1.954;QD=8.00;ReadPosRankSum=-2.025;SB=2.99 GT:AD:DP:GQ:PL 1/1:10,12:22:27:209,27,0 chrIX 246065 . A G 595 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.01;MQ0=0;QD=24.79;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:69:628,69,0 chrIX 246074 . A G 604 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.01;MQ0=0;QD=25.17;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:72:637,72,0 chrIX 246094 . G T 547 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=0;QD=22.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:63:580,63,0 chrIX 246105 . A G 828 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;QD=20.20;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,40:41:99:861,99,0 chrIX 246179 . T A 1781 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;QD=26.98;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1814,195,0 chrIX 246220 . T A 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=1;QD=2.98;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:1,4:5:6:46,6,0 chrIX 246592 . A G 1546 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;QD=9.26;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,166:167:99:1579,174,0 chrIX 246605 . G A 2492 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.7140;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=14.66;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2525,273,0 chrIX 246643 . A C 3150 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.0573;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=18.75;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3183,378,0 chrIX 246934 . G C 4724.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.9831;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.04;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4724,522,0 chrIX 247021 . C A 4081.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=22.30;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4081,432,0 chrIX 247032 . T C 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.236;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=1.579;QD=23.21;ReadPosRankSum=1.710;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3690,390,0 chrIX 247058 . G C 3020 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=20.68;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3053,336,0 chrIX 247121 . A G 2964 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=22.63;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2997,324,0 chrIX 247126 . G C 3029 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=20.89;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3062,327,0 chrIX 247255 . G A 2549 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;QD=23.39;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2582,279,0 chrIX 247296 . C T 1312 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=36.63;MQ0=0;QD=20.18;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1345,153,0 chrIX 247307 . C T 1234 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.91;MQ0=0;QD=23.28;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1267,138,0 chrIX 247315 . G A 1037 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=35.7179;MLEAC=2;MLEAF=1.00;MQ=29.56;MQ0=0;QD=20.74;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1070,120,0 chrIX 247361 . G A 1172 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=19.53;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1205,132,0 chrIX 247384 . G C 1010 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=19.06;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1043,114,0 chrIX 247387 . T C 969 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=58;Dels=0.00;FS=11.971;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.49;MQ0=0;MQRankSum=-1.300;QD=16.71;ReadPosRankSum=2.365;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1002,111,0 chrIX 247394 . A C 951 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.15;MQ0=0;QD=15.59;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:984,108,0 chrIX 247422 . T G 958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=4.548;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.62;MQ0=0;MQRankSum=-0.699;QD=16.81;ReadPosRankSum=1.672;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:991,111,0 chrIX 247434 . G A 1172 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.70;MQ0=0;QD=17.49;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1205,132,0 chrIX 247477 . T G 1102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.22;MQ0=0;MQRankSum=-0.672;QD=12.96;ReadPosRankSum=1.691;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1135,132,0 chrIX 247481 . C G 1120 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=13.18;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1153,129,0 chrIX 247491 . A G 927 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=5.133;HaplotypeScore=27.8509;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=-1.732;QD=12.36;ReadPosRankSum=1.686;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:960,111,0 chrIX 247492 . A T 977 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=27.0622;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;QD=13.20;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1010,111,0 chrIX 247495 . C T 978 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=54.1245;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;QD=13.22;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1011,111,0 chrIX 247508 . T A 407.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;DP=72;Dels=0.00;FS=9.680;HaplotypeScore=12.7079;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=0;MQRankSum=-0.988;QD=5.65;ReadPosRankSum=7.110;SB=-1.600e+02 GT:AD:DP:GQ:PL 0/1:28,44:72:99:437,0,152 chrIX 247509 . T C 473 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.716;DP=55;Dels=0.00;FS=8.905;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;MQRankSum=0.000;QD=8.60;ReadPosRankSum=5.069;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:11,43:55:63:506,63,0 chrIX 247510 . C A 500 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=55;Dels=0.00;FS=9.079;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;MQRankSum=1.357;QD=9.09;ReadPosRankSum=5.081;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:11,44:55:66:533,66,0 chrIX 247514 . T C 380 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.455;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=28.7530;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;MQRankSum=-1.057;QD=5.28;ReadPosRankSum=7.110;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:28,44:72:51:413,51,0 chrIX 247516 . C T 377 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.576;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=29.7477;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;MQRankSum=0.502;QD=5.16;ReadPosRankSum=7.187;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:29,44:73:51:410,51,0 chrIX 247522 . T C 393 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.105;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=28.7561;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;MQRankSum=1.276;QD=4.85;ReadPosRankSum=6.245;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:30,51:81:54:426,54,0 chrIX 247530 . T C 729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.723;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=18.6200;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;MQRankSum=-2.325;QD=8.78;ReadPosRankSum=3.723;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:5,78:83:87:762,87,0 chrIX 247539 . A T 929 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;QD=11.33;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:962,105,0 chrIX 247598 . A C 656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.29;MQ0=0;MQRankSum=-1.675;QD=10.93;ReadPosRankSum=0.289;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:75:689,75,0 chrIX 247608 . G A 638 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.56;MQ0=0;QD=11.39;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:75:671,75,0 chrIX 247613 . C T 540 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.39;MQ0=0;QD=9.82;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:66:573,66,0 chrIX 247623 . G A 477 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=35.84;MQ0=0;QD=8.52;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:60:510,60,0 chrIX 247635 . T A 416 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=30.12;MQ0=0;QD=8.32;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:51:449,51,0 chrIX 247681 . T C 1332 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;QD=18.00;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1365,153,0 chrIX 247791 . C A 2474 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=23.12;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2507,270,0 chrIX 247822 . C T 1410 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=19.58;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1443,159,0 chrIX 247828 . A T 1267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.962;DP=81;Dels=0.00;FS=5.283;HaplotypeScore=4.0320;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=1.347;QD=15.64;ReadPosRankSum=1.647;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1300,138,0 chrIX 247879 . T A 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=-1.393;QD=19.86;ReadPosRankSum=1.706;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2675,285,0 chrIX 247894 . C G 2759 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=18.64;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2792,309,0 chrIX 247899 . A C 2848 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=18.74;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2881,318,0 chrIX 247930 . T C 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=-0.602;QD=17.21;ReadPosRankSum=2.417;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:2,147:150:99:2614,297,0 chrIX 248675 . T A 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.7057;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.377;QD=20.63;ReadPosRankSum=1.043;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3445,381,0 chrIX 248941 . T A 55.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=58;Dels=0.00;FS=9.550;HaplotypeScore=76.7098;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;MQRankSum=0.343;QD=0.96;ReadPosRankSum=6.360;SB=-1.915e+02 GT:AD:DP:GQ:PL 1/1:27,31:58:12:88,12,0 chrIX 249546 . T C 2499 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.8352;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.65;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2532,276,0 chrIX 249665 . A T 2246 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.3071;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=17.69;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2279,246,0 chrIX 249757 . C A 2377 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.41;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2410,261,0 chrIX 250317 . C G 3996.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.08;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3996,441,0 chrIX 250337 . G A 3951.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.83;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3951,426,0 chrIX 250521 . C T 4515.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.60;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4515,492,0 chrIX 250530 . C T 4143.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.21;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4143,444,0 chrIX 250597 . G A 5195.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.59;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5195,547,0 chrIX 250668 . C T 5059.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=23.64;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5059,538,0 chrIX 250683 . T C 4228.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.52;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4228,477,0 chrIX 250698 . C T 4082.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.26;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4082,435,0 chrIX 250881 . T C 4266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=202;Dels=0.00;FS=3.021;HaplotypeScore=22.8868;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.608;QD=21.12;ReadPosRankSum=2.413;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:2,198:202:99:4266,477,0 chrIX 251208 . T A 4688.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.21;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4688,525,0 chrIX 251499 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=25.46;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3972,426,0 chrIX 251544 . G A 3078 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=22.30;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3111,327,0 chrIX 251549 . A G 2781 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=20.75;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2814,321,0 chrIX 251559 . T C 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.593;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-1.496;QD=18.93;ReadPosRankSum=2.889;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2608,294,0 chrIX 251784 . T C 3114 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.0261;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.35;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3147,360,0 chrIX 251795 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.50;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3021,324,0 chrIX 251868 . T C 2438 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.66;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2471,264,0 chrIX 251980 . T C 3087 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.53;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3120,342,0 chrIX 252102 . A C 2698 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.26;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2731,300,0 chrIX 252323 . C T 2854 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.39;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2887,315,0 chrIX 252351 . A G 2694 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.27;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2727,294,0 chrIX 252405 . T C 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.434;QD=20.09;ReadPosRankSum=1.695;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1921,207,0 chrIX 253139 . C T 5455.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.63;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5455,606,0 chrIX 253199 . C G 6109.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.9138;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.77;SB=-3.310e+03 GT:AD:DP:GQ:PL 1/1:0,254:257:99:6109,663,0 chrIX 253318 . T C 5624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=254;Dels=0.00;FS=12.387;HaplotypeScore=22.5198;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-2.462;QD=22.14;ReadPosRankSum=2.638;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:3,249:254:99:5624,612,0 chrIX 253488 . G A 4374.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=16.0021;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.20;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4374,483,0 chrIX 254025 . A G 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.179;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=27.3006;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-0.577;QD=11.62;ReadPosRankSum=3.215;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:5,143:150:99:1776,198,0 chrIX 254261 . T C 6556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.302;QD=25.91;ReadPosRankSum=1.691;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:1,251:253:99:6556,703,0 chrIX 254311 . C A 4243.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.31;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4243,462,0 chrIX 254336 . G A 3438.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.22;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3438,390,0 chrIX 254355 . T C 3706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=177;Dels=0.00;FS=3.161;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.590;QD=20.94;ReadPosRankSum=1.693;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3706,417,0 chrIX 254592 . A C 3673.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.25;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3673,402,0 chrIX 254748 . T A 2941 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5413;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.87;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2974,312,0 chrIX 255654 . A C 3645.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3645,402,0 chrIX 256045 . C T 558 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=25.36;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:63:591,63,0 chrIX 256089 . G A 559 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.70;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:60:592,60,0 chrIX 256094 . T A 427 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=16.42;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:48:460,48,0 chrIX 256304 . T C 4010.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.30;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4010,444,0 chrIX 256581 . C T 3526.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.99;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3526,381,0 chrIX 256673 . T C 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=159;Dels=0.00;FS=5.931;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=0.297;QD=22.41;ReadPosRankSum=2.929;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:3,153:159:99:3563,393,0 chrIX 256715 . T C 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=163;Dels=0.00;FS=5.097;HaplotypeScore=8.1566;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;MQRankSum=0.944;QD=21.59;ReadPosRankSum=3.330;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:4,158:163:99:3519,387,0 chrIX 256728 . G T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=21.88;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3567,387,0 chrIX 256751 . A G 2494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=133;Dels=0.02;FS=4.771;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;MQRankSum=0.013;QD=18.75;ReadPosRankSum=1.705;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2527,291,0 chrIX 256752 . G A 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.043;DP=132;Dels=0.00;FS=2.204;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;MQRankSum=0.956;QD=19.05;ReadPosRankSum=2.000;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:4,127:132:99:2547,288,0 chrIX 256796 . T C 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=-0.458;QD=20.37;ReadPosRankSum=1.699;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,105:108:99:2233,243,0 chrIX 256885 . C G 4330.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.6981;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.21;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4330,489,0 chrIX 256921 . G A 4264.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.32;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4264,459,0 chrIX 256951 . G A 2655 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=15.80;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2688,297,0 chrIX 256984 . A G 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=134;Dels=0.00;FS=3.385;HaplotypeScore=6.5230;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;MQRankSum=-1.133;QD=13.14;ReadPosRankSum=1.654;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:1794,198,0 chrIX 257003 . C A 1240 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=104.8305;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=10.25;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1273,144,0 chrIX 257011 . T C 1286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;MQRankSum=-1.307;QD=11.28;ReadPosRankSum=1.671;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1319,147,0 chrIX 257018 . G A 1462 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=12.08;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:1495,159,0 chrIX 257135 . G A 4174.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=20.3274;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.30;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4174,444,0 chrIX 257350 . A G 2948 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.50;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2981,324,0 chrIX 257381 . T A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.78;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3758,405,0 chrIX 257456 . A T 1746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.406;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.696;QD=14.92;ReadPosRankSum=1.703;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1779,198,0 chrIX 257516 . A G 815 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=3.561;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.34;MQ0=0;MQRankSum=-1.650;QD=9.70;ReadPosRankSum=1.691;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:90:848,90,0 chrIX 257521 . C T 741 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.32;MQ0=0;QD=9.38;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:81:774,81,0 chrIX 257522 . G T 748 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=0;QD=9.35;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:84:781,84,0 chrIX 257531 . C T 687 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.77;MQ0=0;QD=7.99;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:78:720,78,0 chrIX 257534 . C A 694 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.81;MQ0=0;QD=8.16;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:78:727,78,0 chrIX 257575 . T G 1412 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=0;QD=15.69;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1445,156,0 chrIX 257638 . C T 2502 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.29;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2535,270,0 chrIX 257809 . A G 4249.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.74;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4249,465,0 chrIX 257823 . A G 3568.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.62;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3568,405,0 chrIX 257945 . T C 3080 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.32;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3113,336,0 chrIX 258755 . G A 1470 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1503,162,0 chrIX 258854 . T A 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.0639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.141;QD=23.77;ReadPosRankSum=1.697;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2362,258,0 chrIX 259266 . C T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3402,378,0 chrIX 259323 . T A 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=5.010;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=0.000;QD=22.31;ReadPosRankSum=1.670;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3748,402,0 chrIX 259533 . C T 2593 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.8380;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2626,297,0 chrIX 259701 . G A 2155 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.34;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2188,237,0 chrIX 259794 . T C 1645 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.09;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1678,189,0 chrIX 259913 . G A 1813 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.58;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1846,195,0 chrIX 259923 . T C 1812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=-0.387;QD=21.07;ReadPosRankSum=1.691;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1845,204,0 chrIX 260018 . T A 1054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;MQRankSum=-0.764;QD=15.50;ReadPosRankSum=1.121;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1087,117,0 chrIX 260022 . C T 1033 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=16.14;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1066,117,0 chrIX 260120 . G A 2866 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=25.82;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2899,309,0 chrIX 260167 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=21.75;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2774,303,0 chrIX 260232 . C T 2250 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4514;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=20.45;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2283,246,0 chrIX 260247 . A C 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=3.786;HaplotypeScore=2.6605;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.976;QD=21.12;ReadPosRankSum=1.543;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2356,264,0 chrIX 260320 . A G 2001 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=4.4434;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=20.42;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2034,225,0 chrIX 260331 . A G 1749 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5900;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;QD=18.41;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1782,192,0 chrIX 260350 . C T 1689 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=16.40;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1722,183,0 chrIX 260376 . C T 1777 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=14.81;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1810,195,0 chrIX 260388 . C T 2062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=4.740;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;MQRankSum=0.272;QD=14.62;ReadPosRankSum=-0.891;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2095,225,0 chrIX 260414 . T A 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.276;DP=162;Dels=0.00;FS=2.410;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.254;QD=17.50;ReadPosRankSum=3.405;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:4,158:162:99:2868,321,0 chrIX 260769 . T C 2821 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2854,309,0 chrIX 261061 . C T 1726 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.8461;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.57;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1759,189,0 chrIX 261156 . A T 1351 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.79;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1384,150,0 chrIX 261221 . T C 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.9386;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.189;QD=21.95;ReadPosRankSum=1.674;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2667,294,0 chrIX 261261 . G A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.61;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3376,366,0 chrIX 261499 . A G 3648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8625;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.876;QD=19.83;ReadPosRankSum=1.694;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:3648,390,0 chrIX 261520 . T C 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=206;Dels=0.00;FS=10.095;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.613;QD=19.57;ReadPosRankSum=2.966;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:3,202:206:99:4032,441,0 chrIX 261805 . T C 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=137;Dels=0.00;FS=3.669;HaplotypeScore=11.1950;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.219;QD=21.70;ReadPosRankSum=1.655;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3006,327,0 chrIX 262330 . C G 3421.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3421,378,0 chrIX 262414 . T G 3353.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3353,381,0 chrIX 262771 . G A 4761.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.04;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4761,522,0 chrIX 262888 . T C 5259.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.0903;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.87;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5259,588,0 chrIX 263059 . G A 4137.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.66;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4137,459,0 chrIX 263188 . G A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.74;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3859,414,0 chrIX 263590 . T A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.1694;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.75;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3390,366,0 chrIX 263911 . A G 4026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=174;Dels=0.00;FS=7.722;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.307;QD=23.14;ReadPosRankSum=2.378;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:4026,441,0 chrIX 264166 . T A 4439.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.24;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4439,477,0 chrIX 264361 . C T 4105.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.7571;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.87;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4105,450,0 chrIX 264604 . C T 3294.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.36;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3294,363,0 chrIX 265508 . C T 4463.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.61;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4463,483,0 chrIX 265732 . A C 4379.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.0225;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.81;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4379,480,0 chrIX 265793 . G T 4037.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.79;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4037,447,0 chrIX 265808 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.5444;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=18.78;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,211:215:99:4038,429,0 chrIX 266102 . A G 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=177;Dels=0.00;FS=10.037;HaplotypeScore=14.8501;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.720;QD=20.64;ReadPosRankSum=2.960;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:3,173:177:99:3654,414,0 chrIX 266696 . G A 6679.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=12.6873;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.04;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,303:303:99:6679,715,0 chrIX 266717 . A G 6157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=323;Dels=0.00;FS=18.978;HaplotypeScore=4.2969;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-1.197;QD=19.06;ReadPosRankSum=3.375;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:4,318:323:99:6157,684,0 chrIX 266720 . C T 6279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=5.0870;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=-0.420;QD=19.50;ReadPosRankSum=-1.463;SB=-2.891e+03 GT:AD:DP:GQ:PL 1/1:1,321:322:99:6279,690,0 chrIX 266933 . C T 7749.01 PASS AC=2;AF=1.00;AN=2;DP=354;Dels=0.00;FS=0.000;HaplotypeScore=25.2611;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.89;SB=-3.830e+03 GT:AD:DP:GQ:PL 1/1:0,354:354:99:7749,832,0 chrIX 267287 . A G 7837.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=371;Dels=0.00;FS=9.245;HaplotypeScore=19.8869;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.198;QD=21.12;ReadPosRankSum=2.905;SB=-4.583e+03 GT:AD:DP:GQ:PL 1/1:4,366:371:99:7837,897,0 chrIX 267404 . C T 6054.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=13.1640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,286:291:99:6054,652,0 chrIX 267592 . G A 4893.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.55;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4893,523,0 chrIX 267764 . A G 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=132;Dels=0.00;FS=2.570;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.504;QD=19.05;ReadPosRankSum=2.947;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2547,285,0 chrIX 267785 . C T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.4890;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.23;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3317,360,0 chrIX 268176 . G A 7207.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=11.1172;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=21.91;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:0,327:329:99:7207,769,0 chrIX 268188 . T A 7067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=336;Dels=0.00;FS=13.376;HaplotypeScore=13.6016;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=1.331;QD=21.03;ReadPosRankSum=2.913;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:3,333:336:99:7067,777,0 chrIX 268262 . G T 6492.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=22.62;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:0,286:287:99:6492,703,0 chrIX 268278 . C G 5997.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=11.4974;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.57;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:0,275:278:99:5997,649,0 chrIX 268399 . A G 3922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=199;Dels=0.00;FS=3.030;HaplotypeScore=8.8553;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-1.919;QD=19.71;ReadPosRankSum=2.425;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:3922,423,0 chrIX 268413 . T C 3896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.967;DP=213;Dels=0.01;FS=9.220;HaplotypeScore=3.7084;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;MQRankSum=-1.206;QD=18.29;ReadPosRankSum=2.957;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:3,207:211:99:3896,423,0 chrIX 268466 . G T 3101 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=15.28;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3134,336,0 chrIX 268483 . G C 2603 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=14.79;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:2636,300,0 chrIX 268690 . A G 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=153;Dels=0.00;FS=5.315;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=2.033;QD=22.90;ReadPosRankSum=2.902;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3503,390,0 chrIX 269349 . C T 7398.01 filter AC=2;AF=1.00;AN=2;DP=364;Dels=0.00;FS=0.000;HaplotypeScore=19.3320;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.32;SB=-3.385e+03 GT:AD:DP:GQ:PL 1/1:0,363:364:99:7398,822,0 chrIX 269523 . C T 6934.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=27.7846;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.73;SB=-3.031e+03 GT:AD:DP:GQ:PL 1/1:0,304:305:99:6934,754,0 chrIX 269580 . T C 5743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=259;Dels=0.00;FS=3.401;HaplotypeScore=19.0099;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.407;QD=22.17;ReadPosRankSum=1.719;SB=-3.100e+03 GT:AD:DP:GQ:PL 1/1:1,255:259:99:5743,633,0 chrIX 269763 . C G 6776.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=18.5274;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.23;SB=-3.119e+03 GT:AD:DP:GQ:PL 1/1:0,334:335:99:6776,777,0 chrIX 269793 . C T 7749.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=10.3771;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.40;SB=-3.623e+03 GT:AD:DP:GQ:PL 1/1:0,346:346:99:7749,826,0 chrIX 269835 . C T 7706.01 PASS AC=2;AF=1.00;AN=2;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=26.0585;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.34;SB=-4.073e+03 GT:AD:DP:GQ:PL 1/1:0,342:345:99:7706,852,0 chrIX 269976 . T C 9139.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=397;Dels=0.00;FS=9.776;HaplotypeScore=20.5492;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.194;QD=23.02;ReadPosRankSum=2.967;SB=-4.909e+03 GT:AD:DP:GQ:PL 1/1:3,394:397:99:9139,1011,0 chrIX 270435 . A G 4005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.481;DP=193;Dels=0.00;FS=5.780;HaplotypeScore=5.6043;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.206;QD=20.75;ReadPosRankSum=0.386;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4005,418,0 chrIX 270588 . C A 2356 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.14;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2389,261,0 chrIX 270684 . A C 1715 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=20.42;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1748,201,0 chrIX 270694 . T A 1472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.130;DP=92;Dels=0.00;FS=5.336;HaplotypeScore=2.1623;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=0.641;QD=16.00;ReadPosRankSum=3.360;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:4,88:92:99:1505,183,0 chrIX 270915 . C A 2208 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.02;FS=0.000;HaplotypeScore=26.9524;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=22.53;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2241,240,0 chrIX 270968 . T A 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=107;Dels=0.00;FS=3.826;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.863;QD=18.69;ReadPosRankSum=2.243;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2033,222,0 chrIX 270969 . A C 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=2.380;QD=19.46;ReadPosRankSum=2.843;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2154,237,0 chrIX 271273 . T C 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.420;QD=23.72;ReadPosRankSum=2.942;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2880,318,0 chrIX 271556 . T C 4096.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4096,453,0 chrIX 271960 . A G 4156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.1998;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.123;QD=22.71;ReadPosRankSum=1.713;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4156,462,0 chrIX 272006 . T C 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.659;DP=182;Dels=0.00;FS=10.657;HaplotypeScore=12.3760;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.643;QD=22.18;ReadPosRankSum=2.928;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:3,177:182:99:4036,441,0 chrIX 272078 . C T 3736.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3736,399,0 chrIX 272261 . T C 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=7.434;HaplotypeScore=13.6398;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.994;QD=22.92;ReadPosRankSum=2.403;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3621,393,0 chrIX 272369 . C T 4292.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4292,462,0 chrIX 272672 . C T 1829 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1862,195,0 chrIX 273183 . A C 4616.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=25.64;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4616,498,0 chrIX 273224 . A G 4471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=182;Dels=0.00;FS=13.344;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.818;QD=24.57;ReadPosRankSum=2.962;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:4471,489,0 chrIX 273421 . C T 3713.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.2130;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.18;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3713,399,0 chrIX 273430 . A G 3416.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.8073;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.08;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3416,369,0 chrIX 273469 . G C 2161 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.8723;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=15.89;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2194,240,0 chrIX 273538 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.40;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3702,414,0 chrIX 273547 . C T 4051.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.51;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4051,432,0 chrIX 273624 . C T 5959.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=14.3942;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.74;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5959,640,0 chrIX 273888 . T G 4449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=16.7464;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.718;QD=17.80;ReadPosRankSum=0.049;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:1,248:250:99:4449,501,0 chrIX 274009 . G A 994 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=13.3214;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=13.25;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1027,114,0 chrIX 274203 . T C 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.487;QD=23.58;ReadPosRankSum=1.678;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3051,330,0 chrIX 274263 . T C 4093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.673;DP=172;Dels=0.00;FS=2.326;HaplotypeScore=13.2271;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.139;QD=23.80;ReadPosRankSum=3.728;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:5,167:172:99:4093,438,0 chrIX 274413 . G A 5167.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=16.8902;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-2.966e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5167,558,0 chrIX 274516 . C T 5524.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=23.2092;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.66;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:0,250:254:99:5524,586,0 chrIX 274972 . A G 2285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.507;QD=15.98;ReadPosRankSum=2.398;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2318,252,0 chrIX 275112 . T C 2274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-0.363;QD=21.66;ReadPosRankSum=2.403;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2307,255,0 chrIX 275129 . A G 2014 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=19.75;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2047,234,0 chrIX 275131 . T C 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=-0.402;QD=20.25;ReadPosRankSum=2.853;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:3,100:103:99:2119,222,0 chrIX 275192 . G A 2213 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.76;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2246,243,0 chrIX 275372 . A G 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.3907;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.321;QD=19.60;ReadPosRankSum=1.714;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:3724,417,0 chrIX 275507 . C T 5726.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=18.2176;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.18;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5726,621,0 chrIX 275789 . C T 4511.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.79;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4511,481,0 chrIX 275972 . A G 7585.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=24.08;SB=-3.185e+03 GT:AD:DP:GQ:PL 1/1:0,315:315:99:7585,832,0 chrIX 276080 . C T 9056.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.201;DP=411;Dels=0.00;FS=0.000;HaplotypeScore=28.6909;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.223;QD=22.03;ReadPosRankSum=0.948;SB=-4.490e+03 GT:AD:DP:GQ:PL 1/1:1,410:411:99:9056,956,0 chrIX 276321 . T A 6727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=333;Dels=0.00;FS=9.621;HaplotypeScore=15.8978;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.282;QD=20.20;ReadPosRankSum=2.413;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:2,330:333:99:6727,727,0 chrIX 276483 . T C 5636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=254;Dels=0.00;FS=9.042;HaplotypeScore=16.8298;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.059;QD=22.19;ReadPosRankSum=3.405;SB=-2.925e+03 GT:AD:DP:GQ:PL 1/1:4,248:254:99:5636,627,0 chrIX 276744 . T C 5474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=256;Dels=0.00;FS=3.202;HaplotypeScore=20.7802;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.162;QD=21.38;ReadPosRankSum=1.691;SB=-3.039e+03 GT:AD:DP:GQ:PL 1/1:1,254:256:99:5474,609,0 chrIX 276932 . C T 4426.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4426,472,0 chrIX 277232 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.56;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:3346,357,0 chrIX 277347 . T C 2076 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.18;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2109,225,0 chrIX 277526 . T C 502 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=17.93;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,27:28:60:535,60,0 chrIX 277591 . A T 1188 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=18.28;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1221,132,0 chrIX 277596 . T C 1284 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=7.8319;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=17.59;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1317,141,0 chrIX 277761 . A C 2430 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.71;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2463,276,0 chrIX 277905 . C A 2998 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4073;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.12;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3031,333,0 chrIX 278148 . G C 1857 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.10;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1890,207,0 chrIX 278157 . T A 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=84;Dels=0.00;FS=6.455;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=0.825;QD=19.87;ReadPosRankSum=1.608;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1702,189,0 chrIX 278371 . G A 4031.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=25.84;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4031,427,0 chrIX 278878 . G A 4050.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.0696;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.77;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4050,435,0 chrIX 278890 . A G 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.083;DP=175;Dels=0.00;FS=8.764;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.005;QD=19.22;ReadPosRankSum=3.409;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:4,168:175:99:3363,369,0 chrIX 278998 . G A 4944.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.10;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4944,528,0 chrIX 279154 . T C 4183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=3.291;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.740;QD=21.79;ReadPosRankSum=1.714;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4183,459,0 chrIX 279199 . C T 4536.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=24.9359;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.10;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4536,481,0 chrIX 279316 . T C 4747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=203;Dels=0.00;FS=6.395;HaplotypeScore=9.5989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.979;QD=23.38;ReadPosRankSum=2.425;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:4747,516,0 chrIX 279526 . T C 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=177;Dels=0.00;FS=4.235;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.624;QD=21.36;ReadPosRankSum=1.673;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3781,429,0 chrIX 279602 . A G 3944.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3944,429,0 chrIX 279700 . T A 2420 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2453,261,0 chrIX 280080 . T G 846 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=10.0434;MLEAC=2;MLEAF=1.00;MQ=60.95;MQ0=0;MQRankSum=-0.612;QD=24.88;ReadPosRankSum=1.631;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,33:34:96:879,96,0 chrIX 280264 . C T 2590 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2623,285,0 chrIX 280331 . T C 2462 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.87;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2495,270,0 chrIX 280877 . A G 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=157;Dels=0.00;FS=3.764;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.099;QD=22.39;ReadPosRankSum=1.666;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3516,390,0 chrIX 280907 . C T 3713.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.27;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3713,402,0 chrIX 281033 . C T 4068.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.07;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4068,441,0 chrIX 281171 . C T 4240.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=24.3089;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.67;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4240,459,0 chrIX 281282 . T G 5694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=13.7595;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.673;QD=23.53;ReadPosRankSum=1.703;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:5694,630,0 chrIX 281719 . C T 4153.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.8468;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.20;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4153,444,0 chrIX 281795 . T C 3123 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.5492;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.84;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3156,342,0 chrIX 281888 . A G 4988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=213;Dels=0.00;FS=7.608;HaplotypeScore=20.2402;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.527;QD=23.42;ReadPosRankSum=2.426;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4988,558,0 chrIX 281969 . G A 3456.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=15.2289;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.44;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3456,372,0 chrIX 282224 . T C 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=3.495;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.118;QD=21.54;ReadPosRankSum=1.711;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3468,384,0 chrIX 283346 . C T 3284.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.6684;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.19;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3284,363,0 chrIX 283369 . C T 3148 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.17;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3181,336,0 chrIX 283390 . A T 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=145;Dels=0.00;FS=3.552;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=0.705;QD=21.50;ReadPosRankSum=1.708;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3151,339,0 chrIX 283475 . T C 3924.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.56;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3924,432,0 chrIX 283496 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=164;Dels=0.00;FS=7.146;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.969;QD=19.95;ReadPosRankSum=2.373;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:2,159:164:99:3271,357,0 chrIX 283497 . C T 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=3.617;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-0.011;QD=19.52;ReadPosRankSum=1.581;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3176,360,0 chrIX 283862 . G A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.12;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3291,351,0 chrIX 284253 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.82;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3456,381,0 chrIX 284273 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.094;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.761;QD=21.20;ReadPosRankSum=1.644;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3329,363,0 chrIX 284292 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.03;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2983,318,0 chrIX 284368 . G C 3830.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3830,420,0 chrIX 284579 . G A 4513.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=16.3348;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.26;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4513,483,0 chrIX 284643 . C T 5349.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.36;SB=-3.059e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5349,577,0 chrIX 285060 . T A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.42;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3257,351,0 chrIX 285202 . A G 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.897;DP=141;Dels=0.00;FS=3.297;HaplotypeScore=130.7429;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=1.560;QD=23.20;ReadPosRankSum=-1.708;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3271,354,0 chrIX 285218 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=22.13;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3109,333,0 chrIX 285229 . A C 3033 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=20.63;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3066,333,0 chrIX 285322 . G A 2868 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.31;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2901,312,0 chrIX 285394 . C G 3820.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.49;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3820,402,0 chrIX 285492 . C T 3123 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=23.66;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3156,333,0 chrIX 285554 . A G 3646.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.96;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3646,402,0 chrIX 285572 . T C 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.1580;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.811;QD=22.53;ReadPosRankSum=0.855;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3582,396,0 chrIX 285709 . A G 4141.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.66;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4141,447,0 chrIX 285783 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=18.70;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2689,297,0 chrIX 285807 . A G 184.03 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=108.1328;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=1.30;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:24:217,24,0 chrIX 285848 . C T 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=160;Dels=0.00;FS=6.273;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=0.008;QD=13.89;ReadPosRankSum=2.263;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:2256,246,0 chrIX 285874 . G A 2868 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=18.9786;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=17.17;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:2901,309,0 chrIX 285902 . A G 2396 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.4189;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=18.15;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2429,270,0 chrIX 286125 . T C 4977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=221;Dels=0.00;FS=2.774;HaplotypeScore=18.8411;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.697;QD=22.52;ReadPosRankSum=2.383;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:2,218:221:99:4977,543,0 chrIX 286178 . C T 5014.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=19.7876;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.19;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5014,546,0 chrIX 286316 . C T 4628.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=18.5711;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.43;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4628,498,0 chrIX 286346 . G A 4537.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.30;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4537,495,0 chrIX 286869 . C T 3045 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8091;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.72;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3078,327,0 chrIX 286948 . G A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.32;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3795,405,0 chrIX 287330 . C G 1775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=3.388;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.318;QD=14.67;ReadPosRankSum=1.126;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:1808,201,0 chrIX 288192 . A G 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=3.016;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.245;QD=21.93;ReadPosRankSum=2.352;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3333,375,0 chrIX 288825 . A G 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=128;Dels=0.00;FS=14.526;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.384;QD=22.64;ReadPosRankSum=2.944;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:3,123:128:99:2931,333,0 chrIX 289127 . C T 2479 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.9412;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.92;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2512,270,0 chrIX 290176 . T C 2530 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.74;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2563,279,0 chrIX 292343 . C T 1920 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.2035;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=17.94;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1953,213,0 chrIX 292353 . A C 1933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=108;Dels=0.00;FS=3.093;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.784;QD=17.90;ReadPosRankSum=1.699;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,105:108:99:1966,222,0 chrIX 296453 . T A 3152 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.2327;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.25;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3185,348,0 chrIX 299898 . T G 771.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.902;DP=148;Dels=0.00;FS=359.921;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.500;MQ=57.62;MQ0=0;MQRankSum=0.709;QD=5.21;ReadPosRankSum=-8.720;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:70,77:148:99:801,0,1016 chrIX 299901 . C G 84.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;DP=109;Dels=0.00;FS=154.122;HaplotypeScore=10.3989;MLEAC=1;MLEAF=0.500;MQ=57.19;MQ0=0;MQRankSum=-0.646;QD=0.77;ReadPosRankSum=-6.269;SB=0.128 GT:AD:DP:GQ:PL 0/1:74,33:109:99:114,0,1029 chrIX 300505 . G C 112.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;DP=140;Dels=0.00;FS=162.827;HaplotypeScore=5.7721;MLEAC=1;MLEAF=0.500;MQ=40.60;MQ0=2;MQRankSum=-8.378;QD=0.80;ReadPosRankSum=-0.368;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,63:140:99:142,0,1422 chrIX 300511 . C A 156.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.531;DP=145;Dels=0.00;FS=160.069;HaplotypeScore=8.2617;MLEAC=1;MLEAF=0.500;MQ=39.74;MQ0=2;MQRankSum=-5.605;QD=1.08;ReadPosRankSum=-0.075;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,69:145:99:186,0,1438 chrIX 300519 . C T 180.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.071;DP=137;Dels=0.00;FS=146.022;HaplotypeScore=11.3822;MLEAC=1;MLEAF=0.500;MQ=39.57;MQ0=2;MQRankSum=-7.105;QD=1.31;ReadPosRankSum=0.519;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,67:137:99:210,0,1284 chrIX 300524 . T A 200.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.193;DP=135;Dels=0.00;FS=101.159;HaplotypeScore=9.0216;MLEAC=1;MLEAF=0.500;MQ=39.22;MQ0=2;MQRankSum=-7.267;QD=1.48;ReadPosRankSum=1.416;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,68:135:99:230,0,1167 chrIX 300532 . T A 306.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.701;DP=128;Dels=0.00;FS=77.109;HaplotypeScore=7.3663;MLEAC=1;MLEAF=0.500;MQ=37.99;MQ0=2;MQRankSum=-6.441;QD=2.39;ReadPosRankSum=1.343;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,69:128:99:336,0,1102 chrIX 300536 . T C 350.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;DP=126;Dels=0.00;FS=59.448;HaplotypeScore=5.0003;MLEAC=1;MLEAF=0.500;MQ=37.30;MQ0=2;MQRankSum=-6.936;QD=2.78;ReadPosRankSum=1.328;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:57,69:126:99:380,0,999 chrIX 300538 . T C 362.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.101;DP=125;Dels=0.00;FS=56.591;HaplotypeScore=5.7889;MLEAC=1;MLEAF=0.500;MQ=37.06;MQ0=2;MQRankSum=-6.883;QD=2.90;ReadPosRankSum=1.185;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:56,69:125:99:392,0,995 chrIX 300544 . T C 354.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;DP=122;Dels=0.00;FS=42.969;HaplotypeScore=4.1486;MLEAC=1;MLEAF=0.500;MQ=36.69;MQ0=2;MQRankSum=-5.247;QD=2.90;ReadPosRankSum=-0.188;SB=-1.230e+02 GT:AD:DP:GQ:PL 0/1:49,73:122:99:384,0,901 chrIX 300655 . T C 247.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.051;DP=166;Dels=0.00;FS=31.293;HaplotypeScore=12.5642;MLEAC=1;MLEAF=0.500;MQ=45.59;MQ0=0;MQRankSum=-0.731;QD=1.49;ReadPosRankSum=-3.302;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,35:166:99:277,0,2480 chrIX 300677 . C T 129.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;DP=152;Dels=0.00;FS=20.493;HaplotypeScore=16.7676;MLEAC=1;MLEAF=0.500;MQ=42.18;MQ0=0;MQRankSum=-4.779;QD=0.85;ReadPosRankSum=-4.646;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:124,28:152:99:159,0,2344 chrIX 300680 . G A 109.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;DP=153;Dels=0.00;FS=24.391;HaplotypeScore=19.9224;MLEAC=1;MLEAF=0.500;MQ=42.07;MQ0=0;MQRankSum=-3.654;QD=0.71;ReadPosRankSum=-4.938;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,28:153:99:139,0,2413 chrIX 303589 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3271,369,0 chrIX 304231 . C G 2600 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2633,288,0 chrIX 306037 . C A 4415.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.97;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4415,477,0 chrIX 306403 . A G 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=143;Dels=0.00;FS=3.363;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.511;QD=21.23;ReadPosRankSum=1.708;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3069,336,0 chrIX 306523 . A G 3057 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3090,336,0 chrIX 308815 . C A 6128.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.94;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:6128,661,0 chrIX 308852 . G A 6795.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.44;SB=-3.919e+03 GT:AD:DP:GQ:PL 1/1:0,317:317:99:6795,768,0 chrIX 308908 . G A 6075.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=22.4052;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.62;SB=-3.336e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:6075,669,0 chrIX 310160 . T C 5358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=250;Dels=0.00;FS=7.608;HaplotypeScore=6.5273;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=-0.163;QD=21.43;ReadPosRankSum=2.420;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:2,247:250:99:5358,574,0 chrIX 310171 . A G 5171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=253;Dels=0.00;FS=5.638;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.774;QD=20.44;ReadPosRankSum=2.956;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:3,250:253:99:5171,561,0 chrIX 310223 . A G 3910.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.6120;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=18.10;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:3910,423,0 chrIX 310226 . G A 3974.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=17.74;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:3974,432,0 chrIX 310286 . G T 2753 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.8964;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.86;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2786,303,0 chrIX 310412 . G C 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.443;DP=135;Dels=0.00;FS=5.295;HaplotypeScore=14.2672;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-1.522;QD=18.81;ReadPosRankSum=1.443;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,131:135:99:2573,264,0 chrIX 310533 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=16.24;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1722,183,0 chrIX 310671 . A G 1566 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=9.2358;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=23.37;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1599,180,0 chrIX 310732 . T G 1581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=6.636;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.746;QD=19.52;ReadPosRankSum=2.359;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1614,177,0 chrIX 310769 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=19.61;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1445,156,0 chrIX 310815 . G C 1646 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.95;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1679,183,0 chrIX 310874 . A G 1447 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=20.38;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1480,162,0 chrIX 310945 . G T 1430 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=18.82;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1463,165,0 chrIX 311139 . T C 3699.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-0.685;QD=20.44;ReadPosRankSum=2.409;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3699,420,0 chrIX 311141 . C T 3907.01 SnpCluster AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=21.71;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3907,423,0 chrIX 311143 . G A 3872.01 SnpCluster AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=21.39;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3872,420,0 chrIX 311461 . G A 5800.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=23.0930;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.58;SB=-2.996e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5800,622,0 chrIX 311545 . A G 5385.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=15.0119;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.82;SB=-3.057e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5385,585,0 chrIX 311839 . C T 3714.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=22.65;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3714,411,0 chrIX 313853 . G A 3202 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.24;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3235,357,0 chrIX 314015 . T A 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.738;QD=24.60;ReadPosRankSum=2.410;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:2,123:125:99:3108,333,0 chrIX 318288 . C T 3436.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3436,369,0 chrIX 318694 . T A 4009.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.79;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4009,441,0 chrIX 319670 . C T 4191.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.83;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4191,462,0 chrIX 320609 . T C 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=4.512;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.266;QD=22.56;ReadPosRankSum=1.652;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2989,318,0 chrIX 320712 . T C 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=128;Dels=0.00;FS=5.891;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.119;QD=22.31;ReadPosRankSum=1.786;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:2889,294,0 chrIX 320919 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2974,318,0 chrIX 323727 . C A 4417.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4417,480,0 chrIX 323829 . C T 4325.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.6999;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4325,471,0 chrIX 323976 . A G 2529 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2562,291,0 chrIX 324390 . T C 812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.969;DP=68;Dels=0.00;FS=9.384;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=30.03;MQ0=0;MQRankSum=-0.408;QD=11.94;ReadPosRankSum=5.818;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:32,35:68:93:845,93,0 chrIX 325886 . A G 2510 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=25.88;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2543,276,0 chrIX 326195 . C G 4249.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4249,486,0 chrIX 326249 . A G 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=188;Dels=0.00;FS=12.296;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.870;QD=21.93;ReadPosRankSum=2.962;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:3,183:188:99:4122,468,0 chrIX 326411 . G T 4651.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4651,516,0 chrIX 326540 . A G 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=166;Dels=0.00;FS=3.009;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.038;QD=21.08;ReadPosRankSum=2.404;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:2,161:166:99:3500,384,0 chrIX 326669 . G A 2800 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2833,303,0 chrIX 326875 . T C 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.824;QD=24.21;ReadPosRankSum=1.684;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3534,381,0 chrIX 327164 . C A 3514.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.4356;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.53;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3514,384,0 chrIX 327320 . C T 3943.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.28;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3943,423,0 chrIX 327333 . T A 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=169;Dels=0.00;FS=4.217;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-1.404;QD=20.50;ReadPosRankSum=1.650;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3465,369,0 chrIX 328162 . T C 3079 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;QD=25.66;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3112,336,0 chrIX 328196 . C T 2731 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.14;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2764,300,0 chrIX 328390 . G A 4475.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.51;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,203:208:99:4475,492,0 chrIX 328585 . T C 4415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=202;Dels=0.00;FS=3.255;HaplotypeScore=9.8279;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.750;QD=21.86;ReadPosRankSum=1.715;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4415,483,0 chrIX 329599 . G A 3413.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.60;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3413,366,0 chrIX 329647 . A G 3322.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.15;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3322,369,0 chrIX 330361 . G A 3001 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3034,321,0 chrIX 331384 . A G 4418.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.50;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4418,498,0 chrIX 331927 . A G 4625.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.6731;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4625,510,0 chrIX 332173 . A G 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.2823;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.225;QD=21.38;ReadPosRankSum=1.634;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3784,423,0 chrIX 332459 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.62;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3249,351,0 chrIX 332541 . A G 5212.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.91;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5212,573,0 chrIX 332714 . G A 5277.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=25.01;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5277,568,0 chrIX 332947 . C A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.7519;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.26;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:3659,399,0 chrIX 333073 . A C 4912.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=218.0419;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.81;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:4912,534,0 chrIX 333452 . G A 2965 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2998,324,0 chrIX 333801 . A G 5450.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.71;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5450,580,0 chrIX 333942 . T C 6621.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=22.2800;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=22.00;SB=-3.641e+03 GT:AD:DP:GQ:PL 1/1:0,301:301:99:6621,738,0 chrIX 334061 . A G 4645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.614;DP=235;Dels=0.00;FS=7.923;HaplotypeScore=23.5621;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.449;QD=19.77;ReadPosRankSum=3.820;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:5,230:235:99:4645,528,0 chrIX 334096 . A T 4396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=209;Dels=0.00;FS=2.849;HaplotypeScore=14.3810;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=0.088;QD=21.03;ReadPosRankSum=2.403;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4396,466,0 chrIX 334155 . T A 2908 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=15.80;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:2941,318,0 chrIX 334179 . T C 1383 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=0;QD=12.57;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:1416,156,0 chrIX 334188 . T A 1050 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.22;MQ0=0;QD=11.54;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1083,117,0 chrIX 334194 . C T 781 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.07;MQ0=0;QD=11.32;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:87:814,87,0 chrIX 334200 . A T 461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=52;Dels=0.00;FS=5.591;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.26;MQ0=0;MQRankSum=0.196;QD=8.87;ReadPosRankSum=2.865;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:3,49:52:54:494,54,0 chrIX 334221 . T A 503.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.290;DP=63;Dels=0.00;FS=2.503;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=50.92;MQ0=0;MQRankSum=3.647;QD=7.98;ReadPosRankSum=4.854;SB=-3.224e+02 GT:AD:DP:GQ:PL 0/1:17,46:63:99:533,0,104 chrIX 334764 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=24.50;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2189,231,0 chrIX 334815 . T C 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=0.823;QD=23.72;ReadPosRankSum=1.708;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3344,369,0 chrIX 334919 . T C 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=166;Dels=0.00;FS=2.946;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.718;QD=24.45;ReadPosRankSum=2.405;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:4059,438,0 chrIX 334989 . G A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=20.88;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3487,372,0 chrIX 335001 . G A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=19.19;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3281,348,0 chrIX 335022 . T A 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.377;DP=189;Dels=0.00;FS=13.847;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;MQRankSum=-1.335;QD=16.85;ReadPosRankSum=3.404;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:4,185:189:99:3217,348,0 chrIX 335035 . C A 3566.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=17.57;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3566,396,0 chrIX 335344 . C T 2953 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.72;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2986,321,0 chrIX 335376 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.92;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2921,327,0 chrIX 335555 . T A 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=92;Dels=0.00;FS=5.862;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.286;QD=24.61;ReadPosRankSum=2.880;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:3,89:92:99:2297,249,0 chrIX 335581 . A T 2070 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.6940;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=24.07;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2103,225,0 chrIX 335743 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.41;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3109,333,0 chrIX 335815 . A G 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.464;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-0.674;QD=18.56;ReadPosRankSum=1.706;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,131:135:99:2539,279,0 chrIX 335817 . T C 2539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=139;Dels=0.00;FS=2.942;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.734;QD=18.27;ReadPosRankSum=2.397;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2572,279,0 chrIX 336156 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=156;Dels=0.00;FS=3.183;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.575;QD=22.25;ReadPosRankSum=1.710;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3471,375,0 chrIX 336197 . G A 2973 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=7.8174;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.09;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3006,324,0 chrIX 336223 . T C 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.056;QD=21.79;ReadPosRankSum=-0.447;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2778,281,0 chrIX 336289 . A G 1869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.2932;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.672;QD=19.07;ReadPosRankSum=1.697;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1902,213,0 chrIX 336424 . G A 1014 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=17.19;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1047,114,0 chrIX 336464 . T A 954 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.08;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:987,108,0 chrIX 336519 . C G 1386 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.49;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1419,156,0 chrIX 336672 . A G 817 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=53.5919;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=13.18;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:96:850,96,0 chrIX 336673 . A G 819 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=53.5919;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=13.21;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:96:852,96,0 chrIX 336731 . T C 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.443;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=0.902;QD=19.29;ReadPosRankSum=1.696;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1885,210,0 chrIX 336770 . G A 2842 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.9128;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.74;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2875,315,0 chrIX 337002 . G A 4887.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=25.06;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4887,522,0 chrIX 337034 . G A 4502.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=24.74;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4502,483,0 chrIX 337083 . A T 2510 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=22.82;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2543,270,0 chrIX 337098 . A G 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-1.108;QD=21.22;ReadPosRankSum=1.607;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2388,264,0 chrIX 337219 . T G 3321.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=21.43;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3321,363,0 chrIX 337321 . C A 1562 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=11.7403;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=13.35;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,111:116:99:1595,174,0 chrIX 337478 . G A 2510 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.08;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2543,288,0 chrIX 337519 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.98;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2890,312,0 chrIX 337589 . C A 5045.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.9911;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.14;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5045,543,0 chrIX 337621 . C T 5093.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=16.0200;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.95;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:5093,549,0 chrIX 337721 . A G 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=161;Dels=0.00;FS=3.021;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.453;QD=22.13;ReadPosRankSum=2.373;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3563,396,0 chrIX 337799 . C G 4208.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=24.05;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4208,450,0 chrIX 337914 . A T 4096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=178;Dels=0.00;FS=3.261;HaplotypeScore=13.7491;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.156;QD=23.01;ReadPosRankSum=1.713;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4096,453,0 chrIX 337948 . T C 4216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=1.181;QD=23.69;ReadPosRankSum=1.693;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:4216,462,0 chrIX 338032 . A G 3564.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=21.73;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3564,396,0 chrIX 338050 . A G 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.796;DP=164;Dels=0.00;FS=7.200;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;MQRankSum=-0.629;QD=17.49;ReadPosRankSum=2.419;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:2901,333,0 chrIX 338491 . C T 3487.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.38;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3487,372,0 chrIX 338777 . C T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.69;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3335,372,0 chrIX 339383 . A G 3528.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.0311;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.36;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3528,390,0 chrIX 339502 . T C 6668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=297;Dels=0.00;FS=3.709;HaplotypeScore=14.0443;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.105;QD=22.45;ReadPosRankSum=1.709;SB=-3.374e+03 GT:AD:DP:GQ:PL 1/1:1,295:297:99:6668,744,0 chrIX 339595 . T C 5307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=233;Dels=0.00;FS=6.383;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.006;QD=22.78;ReadPosRankSum=2.428;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:5307,594,0 chrIX 340156 . G A 4234.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.0989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4234,462,0 chrIX 340345 . G A 3539.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3539,378,0 chrIX 340540 . G A 3697.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3697,396,0 chrIX 340669 . T C 2468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.799;QD=18.98;ReadPosRankSum=1.705;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2501,285,0 chrIX 340684 . T C 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=0.318;QD=19.45;ReadPosRankSum=1.661;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:2911,324,0 chrIX 340768 . T A 4258.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=3.486;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.937;QD=23.27;ReadPosRankSum=1.675;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4258,459,0 chrIX 340813 . C T 4054.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.3600;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.52;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4054,432,0 chrIX 340927 . A C 3814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-0.760;QD=23.26;ReadPosRankSum=1.711;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3814,411,0 chrIX 341117 . G T 3940.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.17;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3940,420,0 chrIX 341215 . C A 3074 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3107,333,0 chrIX 341299 . T C 3884.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.9702;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.26;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3884,423,0 chrIX 341341 . T A 2930 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2963,324,0 chrIX 341595 . C A 899 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:932,102,0 chrIX 341662 . C T 1413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.562;QD=19.09;ReadPosRankSum=0.843;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1446,156,0 chrIX 341674 . C T 1800 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.50;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1833,198,0 chrIX 341700 . G A 1865 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.19;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1898,204,0 chrIX 341843 . T C 2233 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.81;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2266,240,0 chrIX 342312 . T A 2394 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.64;MQ0=0;QD=23.70;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2427,261,0 chrIX 342479 . C A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3253,345,0 chrIX 342999 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.9700;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2633,282,0 chrIX 343092 . G A 3505.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.50;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3505,372,0 chrIX 343093 . G A 3470.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.17;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3470,372,0 chrIX 343172 . T C 4459.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.47;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4459,486,0 chrIX 344691 . C T 5012.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.7199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:5012,540,0 chrIX 344740 . C A 4802.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.5007;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4802,508,0 chrIX 345129 . G C 3458.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=22.75;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,148:152:99:3458,384,0 chrIX 345192 . A C 3112 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.6631;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=22.55;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,133:138:99:3145,345,0 chrIX 345247 . A C 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.655;DP=148;Dels=0.00;FS=3.190;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.257;QD=21.73;ReadPosRankSum=-1.170;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3249,341,0 chrIX 345656 . A C 2842 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.8021;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.05;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2875,318,0 chrIX 345705 . T C 2993 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.56;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3026,348,0 chrIX 345745 . T C 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=144;Dels=0.00;FS=2.648;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.050;QD=20.09;ReadPosRankSum=2.364;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2926,321,0 chrIX 345871 . T C 4095.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.82;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4095,438,0 chrIX 346096 . A G 4108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=180;Dels=0.00;FS=6.442;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.403;QD=22.82;ReadPosRankSum=2.422;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4108,459,0 chrIX 346836 . A G 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=3.635;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.696;QD=23.55;ReadPosRankSum=1.696;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2317,255,0 chrIX 348652 . G C 3445.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.76;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:3445,384,0 chrIX 348722 . T C 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.732;QD=22.63;ReadPosRankSum=1.708;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3282,348,0 chrIX 350044 . T C 188.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.751;QD=20.89;ReadPosRankSum=0.751;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,8:9:24:221,24,0 chrIX 350262 . C A 1707 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.10;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1740,192,0 chrIX 354047 . T C 3094 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.56;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3127,342,0 chrIX 360067 . A G 4958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=207;Dels=0.00;FS=6.656;HaplotypeScore=11.0958;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.210;QD=23.95;ReadPosRankSum=2.426;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:2,204:207:99:4958,546,0 chrIX 362255 . G A 4550.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.28;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4550,492,0 chrIX 362714 . G A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.02;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3766,408,0 chrIX 362718 . G A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.80;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3662,405,0 chrIX 363069 . G A 318 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=22.2297;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=15.90;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:39:351,39,0 chrIX 363644 . A G 7046.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=13.2818;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.88;SB=-3.715e+03 GT:AD:DP:GQ:PL 1/1:0,295:295:99:7046,768,0 chrIX 363854 . T C 5311.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=20.3860;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.40;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5311,579,0 chrIX 364558 . T C 569 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=5.0774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.24;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:69:602,69,0 chrIX 365623 . C T 4756.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=20.5723;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.22;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4756,513,0 chrIX 366567 . C T 223.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DP=132;Dels=0.00;FS=18.400;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-0.075;QD=1.69;ReadPosRankSum=-5.213;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:104,28:132:99:253,0,2345 chrIX 366603 . C T 527.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.789;DP=104;Dels=0.00;FS=16.681;HaplotypeScore=8.1332;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=-0.598;QD=5.07;ReadPosRankSum=-5.840;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:69,35:104:99:557,0,1410 chrIX 367594 . A G 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=6.559;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.286;QD=24.17;ReadPosRankSum=2.398;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:2,140:144:99:3481,378,0 chrIX 369589 . G A 5097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.6923;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.840;QD=22.26;ReadPosRankSum=0.431;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5097,567,0 chrIX 371957 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.20;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2830,306,0 chrIX 372035 . T C 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.916;QD=23.13;ReadPosRankSum=1.710;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3654,396,0 chrIX 372078 . C A 3687.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.69;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3687,393,0 chrIX 372095 . C G 3373.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.44;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3373,381,0 chrIX 372134 . T C 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=175;Dels=0.00;FS=2.889;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.035;QD=21.11;ReadPosRankSum=2.365;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:3695,408,0 chrIX 372296 . T C 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=206;Dels=0.00;FS=3.074;HaplotypeScore=14.5330;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.752;QD=22.48;ReadPosRankSum=1.715;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4631,507,0 chrIX 372471 . A T 3024 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.38;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3057,330,0 chrIX 372481 . A G 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=3.332;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.165;QD=16.35;ReadPosRankSum=1.711;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:2779,303,0 chrIX 372491 . T G 2256 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=14.65;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:2289,258,0 chrIX 372590 . T A 2767 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.91;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2800,297,0 chrIX 372678 . C A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7865;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.47;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3497,375,0 chrIX 373063 . A G 1283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=60;Dels=0.00;FS=9.927;HaplotypeScore=5.7889;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=1.321;QD=21.38;ReadPosRankSum=0.440;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1316,144,0 chrIX 373876 . G A 3403.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3403,366,0 chrIX 376391 . A G 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=169;Dels=0.00;FS=7.842;HaplotypeScore=11.4339;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.067;QD=25.27;ReadPosRankSum=2.420;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:2,165:169:99:4271,459,0 chrIX 378389 . A T 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=4.374;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.633;QD=20.50;ReadPosRankSum=1.711;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3424,366,0 chrIX 378552 . G A 7232.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=8.8077;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.46;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,283:284:99:7232,766,0 chrIX 379276 . A C 4708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=192;Dels=0.00;FS=3.392;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.328;QD=24.52;ReadPosRankSum=1.714;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:4708,510,0 chrIX 379413 . T C 3749.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.06;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3749,405,0 chrIX 382929 . G A 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.49;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:74,9,0 chrIX 382930 . T G 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.49;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:74,9,0 chrIX 382932 . C A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=9.59;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:80,9,0 chrIX 383251 . A G 2022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.508;QD=18.72;ReadPosRankSum=1.700;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2055,222,0 chrIX 383339 . G A 2414 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2447,264,0 chrIX 383395 . G A 2170 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2203,240,0 chrIX 383530 . G A 2299 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.12;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2332,246,0 chrIX 383846 . T C 5378.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:5378,591,0 chrIX 383892 . G C 295.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.993;DP=169;Dels=0.00;FS=223.783;HaplotypeScore=11.9082;MLEAC=1;MLEAF=0.500;MQ=56.35;MQ0=0;MQRankSum=-1.095;QD=1.75;ReadPosRankSum=-8.533;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,52:169:99:325,0,1407 chrIX 384189 . T C 4108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.5658;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.898;QD=21.18;ReadPosRankSum=1.678;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:1,190:194:99:4108,456,0 chrIX 384344 . A G 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.4904;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=0.995;QD=16.77;ReadPosRankSum=1.710;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:2666,309,0 chrIX 384418 . T C 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=166;Dels=0.00;FS=3.456;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=1.225;QD=21.51;ReadPosRankSum=1.690;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3570,387,0 chrIX 384584 . G A 4921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.968;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.000;QD=24.00;ReadPosRankSum=0.849;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4921,505,0 chrIX 385546 . C T 2495 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2528,270,0 chrIX 385630 . C T 1241 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=13.1525;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=15.32;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1274,138,0 chrIX 386051 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.179;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.1403;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.968;QD=23.37;ReadPosRankSum=-1.445;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3389,351,0 chrIX 386249 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.733;QD=21.97;ReadPosRankSum=1.710;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3427,390,0 chrIX 386511 . C T 3763.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.53;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3763,411,0 chrIX 386682 . C T 2841 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=20.44;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2874,318,0 chrIX 386758 . G A 4216.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.2799;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=23.42;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4216,456,0 chrIX 386815 . G A 2671 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=19.22;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2704,303,0 chrIX 386817 . C T 2455 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=18.60;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2488,279,0 chrIX 386823 . G A 2408 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=18.38;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2441,267,0 chrIX 386922 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=20.81;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3030,327,0 chrIX 386957 . C T 2584 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0643;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=0;QD=19.28;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2617,282,0 chrIX 386979 . C T 2235 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;QD=17.19;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2268,249,0 chrIX 386988 . G A 2043 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.5173;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=0;QD=15.13;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2076,231,0 chrIX 386994 . G A 2025 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6964;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=15.46;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2058,228,0 chrIX 387056 . G A 2032 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.1776;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;QD=18.47;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2065,219,0 chrIX 387090 . C T 945 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=0;QD=13.31;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:978,105,0 chrIX 387107 . A T 448 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=9.33;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:51:481,51,0 chrIX 387109 . C T 465 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=9.69;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:54:498,54,0 chrIX 387116 . T C 344 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=8.19;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:42:377,42,0 chrIX 387176 . G A 194.01 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=32.12;MQ0=0;QD=3.53;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:5,50:55:27:227,27,0 chrIX 387186 . C A 451 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6598;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;QD=6.83;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,61:66:54:484,54,0 chrIX 387190 . G A 590 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.18;MQ0=0;QD=8.68;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:69:623,69,0 chrIX 387229 . T A 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;MQRankSum=-1.145;QD=17.77;ReadPosRankSum=2.407;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2076,225,0 chrIX 387314 . T C 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.425;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=14.1310;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.251;QD=21.31;ReadPosRankSum=1.704;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2697,294,0 chrIX 387368 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=25.71;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3702,393,0 chrIX 387393 . T C 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;MQRankSum=-0.151;QD=23.31;ReadPosRankSum=1.686;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3496,390,0 chrIX 387419 . A C 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.8591;MLEAC=2;MLEAF=1.00;MQ=41.84;MQ0=0;MQRankSum=-0.561;QD=21.83;ReadPosRankSum=-0.860;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,138:145:99:3199,348,0 chrIX 387502 . T C 4102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=180;Dels=0.00;FS=2.870;HaplotypeScore=14.2062;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;MQRankSum=0.611;QD=22.79;ReadPosRankSum=2.422;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:4102,453,0 chrIX 387531 . T C 4375.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=22.55;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4375,480,0 chrIX 387587 . T C 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=177;Dels=0.00;FS=4.418;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=1.517;QD=21.31;ReadPosRankSum=1.673;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3771,429,0 chrIX 387640 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;QD=19.60;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1875,204,0 chrIX 387779 . G A 3177 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=19.37;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3210,345,0 chrIX 387804 . G A 2350 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;QD=17.54;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2383,267,0 chrIX 387870 . G T 2076 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=21.62;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2109,228,0 chrIX 387908 . A G 1698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;MQRankSum=-0.492;QD=20.71;ReadPosRankSum=1.647;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1731,186,0 chrIX 387914 . C T 1569 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=41.23;MQ0=0;QD=19.86;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1602,183,0 chrIX 387959 . T C 1210 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=34.34;MQ0=0;QD=19.52;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1243,138,0 chrIX 388008 . T C 257 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=58.7792;MLEAC=2;MLEAF=1.00;MQ=35.27;MQ0=0;QD=6.95;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:36:290,36,0 chrIX 388015 . T C 652 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=13.87;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:75:685,75,0 chrIX 388037 . T C 1683 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=18.10;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1716,186,0 chrIX 388158 . C A 703 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=21.30;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:736,78,0 chrIX 388181 . G C 522 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=20.08;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:60:555,60,0 chrIX 388183 . G C 496 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=19.84;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:57:529,57,0 chrIX 388217 . T G 292 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=12.17;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,23:24:39:325,39,0 chrIX 388220 . A G 208 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.76;MQ0=0;QD=10.95;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:30:241,30,0 chrIX 388227 . C T 167.03 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=10.44;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:24:200,24,0 chrIX 388256 . G A 465 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=14.09;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:57:498,57,0 chrIX 388279 . T C 675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=0.258;QD=13.78;ReadPosRankSum=1.659;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:1,46:49:78:708,78,0 chrIX 388304 . C T 935 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=17.31;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:968,105,0 chrIX 388426 . A G 2026 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.78;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2059,231,0 chrIX 388444 . C T 1940 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=18.65;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1973,213,0 chrIX 388455 . C T 1910 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=16.61;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1943,207,0 chrIX 388464 . G A 1582 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=15.98;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1615,183,0 chrIX 388520 . A C 2108 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.16;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2141,243,0 chrIX 388551 . A C 2442 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.61;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2475,267,0 chrIX 388645 . A C 3655.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=24.21;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3655,393,0 chrIX 388703 . G A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.4377;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=22.00;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3476,378,0 chrIX 388882 . C A 3543.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=23.01;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3543,378,0 chrIX 388951 . G A 2218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.448;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=122.9515;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;MQRankSum=-1.320;QD=15.30;ReadPosRankSum=1.635;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:2251,243,0 chrIX 388964 . C T 2005 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=117.2425;MLEAC=2;MLEAF=1.00;MQ=33.25;MQ0=0;QD=13.73;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2038,222,0 chrIX 388981 . A G 2243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;MQRankSum=-0.509;QD=14.56;ReadPosRankSum=1.709;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:2276,246,0 chrIX 388987 . G A 2442 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;QD=15.26;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2475,264,0 chrIX 389094 . G T 3865.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.7822;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=22.87;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3865,417,0 chrIX 389156 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=22.83;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2704,297,0 chrIX 389168 . T A 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=-1.108;QD=21.43;ReadPosRankSum=1.638;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2412,258,0 chrIX 389212 . T C 1563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=83;Dels=0.00;FS=7.986;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=41.29;MQ0=0;MQRankSum=-0.376;QD=18.83;ReadPosRankSum=2.390;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:2,80:83:99:1596,177,0 chrIX 389244 . C A 1237 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;QD=16.28;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1270,138,0 chrIX 389250 . G A 1207 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=144.0097;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;QD=16.53;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1240,135,0 chrIX 389291 . G A 1874 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=17.68;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1907,201,0 chrIX 389295 . C T 2110 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.2611;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=18.19;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2143,228,0 chrIX 389433 . T C 2072 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.77;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2105,237,0 chrIX 389512 . T A 2494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.491;DP=109;Dels=0.00;FS=2.581;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=1.324;QD=22.88;ReadPosRankSum=2.899;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2527,270,0 chrIX 389745 . C T 5432.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=17.5490;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=23.52;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5432,586,0 chrIX 389949 . T C 5031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=309;Dels=0.00;FS=5.822;HaplotypeScore=16.0659;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;MQRankSum=-0.085;QD=16.28;ReadPosRankSum=2.977;SB=-3.459e+03 GT:AD:DP:GQ:PL 1/1:3,303:309:99:5031,549,0 chrIX 389968 . C T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=14.31;SB=-3.223e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:4135,450,0 chrIX 390114 . C T 8648.01 filter AC=2;AF=1.00;AN=2;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=26.2065;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.89;SB=-4.730e+03 GT:AD:DP:GQ:PL 1/1:0,361:362:99:8648,937,0 chrIX 390275 . A G 7163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=345;Dels=0.00;FS=5.966;HaplotypeScore=32.3543;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=2.427;QD=20.76;ReadPosRankSum=2.939;SB=-4.163e+03 GT:AD:DP:GQ:PL 1/1:3,342:345:99:7163,789,0 chrIX 390358 . G A 1539.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.344;DP=500;Dels=0.00;FS=186.548;HaplotypeScore=77.4440;MLEAC=1;MLEAF=0.500;MQ=54.06;MQ0=0;MQRankSum=-10.601;QD=3.08;ReadPosRankSum=-3.408;SB=-4.560e+02 GT:AD:DP:GQ:PL 0/1:288,206:500:99:1569,0,5568 chrIX 390679 . G A 8060.01 filter AC=2;AF=1.00;AN=2;DP=381;Dels=0.00;FS=0.000;HaplotypeScore=31.4446;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=21.15;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:0,380:381:99:8060,871,0 chrIX 390703 . T A 1177.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.587;DP=300;Dels=0.00;FS=180.637;HaplotypeScore=15.9218;MLEAC=1;MLEAF=0.500;MQ=52.43;MQ0=0;MQRankSum=-8.220;QD=3.92;ReadPosRankSum=-2.048;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:195,105:300:99:1207,0,4014 chrIX 390718 . T C 426.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.302;DP=239;Dels=0.00;FS=106.288;HaplotypeScore=11.7846;MLEAC=1;MLEAF=0.500;MQ=51.82;MQ0=0;MQRankSum=-8.073;QD=1.78;ReadPosRankSum=-4.968;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:171,63:239:99:456,0,3564 chrIX 390850 . C T 1309 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;QD=13.64;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1342,147,0 chrIX 390856 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=12.82;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1507,162,0 chrIX 390876 . G A 2605 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=2.5981;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=16.28;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:2638,279,0 chrIX 390899 . T G 4212.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.8037;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.68;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4212,456,0 chrIX 391028 . A G 6566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=292;Dels=0.00;FS=3.257;HaplotypeScore=16.1010;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-1.230;QD=22.49;ReadPosRankSum=1.696;SB=-3.543e+03 GT:AD:DP:GQ:PL 1/1:1,289:292:99:6566,684,0 chrIX 391117 . T C 2553.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.135;DP=444;Dels=0.00;FS=2.980;HaplotypeScore=26.2751;MLEAC=1;MLEAF=0.500;MQ=47.33;MQ0=3;MQRankSum=1.805;QD=5.75;ReadPosRankSum=-2.976;SB=-1.800e+03 GT:AD:DP:GQ:PL 0/1:219,224:444:99:2583,0,3238 chrIX 391198 . G A 4289.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.2964;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=2;QD=20.04;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4289,477,0 chrIX 391213 . G A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=20.51;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3384,378,0 chrIX 391288 . G A 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=9.7691;MLEAC=1;MLEAF=0.500;MQ=27.39;MQ0=2;MQRankSum=-1.342;QD=0.82;ReadPosRankSum=-3.601;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,14:55:75:75,0,665 chrIX 391301 . G A 574.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;DP=115;Dels=0.00;FS=24.582;HaplotypeScore=50.6074;MLEAC=1;MLEAF=0.500;MQ=25.98;MQ0=9;MQRankSum=2.089;QD=4.99;ReadPosRankSum=6.612;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,38:115:99:604,0,572 chrIX 391315 . G A 1642.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.296;DP=168;Dels=0.00;FS=8.859;HaplotypeScore=29.2940;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=10;MQRankSum=1.208;QD=9.77;ReadPosRankSum=3.992;SB=-2.420e+02 GT:AD:DP:GQ:PL 0/1:32,136:168:99:1672,0,185 chrIX 391318 . A G 435.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.306;DP=175;Dels=0.00;FS=17.896;HaplotypeScore=63.4757;MLEAC=1;MLEAF=0.500;MQ=25.73;MQ0=11;MQRankSum=4.599;QD=2.49;ReadPosRankSum=7.394;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:134,41:175:99:465,0,1517 chrIX 391327 . G T 130.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.372;DP=209;Dels=0.00;FS=17.009;HaplotypeScore=46.7991;MLEAC=1;MLEAF=0.500;MQ=25.66;MQ0=11;MQRankSum=3.575;QD=0.62;ReadPosRankSum=0.361;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:172,37:209:99:160,0,2036 chrIX 391339 . C A,T 2415.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=27.4153;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.48;MQ0=12;QD=11.23;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/2:0,166,48:214:99:2475,475,223,2000,0,1937 chrIX 391340 . A G 2014.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;DP=216;Dels=0.00;FS=4.244;HaplotypeScore=33.2009;MLEAC=1;MLEAF=0.500;MQ=25.42;MQ0=12;MQRankSum=1.596;QD=9.32;ReadPosRankSum=-0.946;SB=-2.000e+02 GT:AD:DP:GQ:PL 0/1:50,166:216:99:2044,0,252 chrIX 391345 . A T 1980.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;DP=218;Dels=0.00;FS=23.231;HaplotypeScore=23.5033;MLEAC=1;MLEAF=0.500;MQ=25.32;MQ0=12;MQRankSum=3.024;QD=9.08;ReadPosRankSum=-2.672;SB=-1.340e+02 GT:AD:DP:GQ:PL 0/1:61,156:218:99:2010,0,286 chrIX 391360 . A G 431.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.380;DP=215;Dels=0.00;FS=4.335;HaplotypeScore=7.5959;MLEAC=1;MLEAF=0.500;MQ=24.00;MQ0=21;MQRankSum=0.695;QD=2.00;ReadPosRankSum=-3.396;SB=-9.401e+01 GT:AD:DP:GQ:PL 0/1:132,83:215:99:461,0,1490 chrIX 391372 . G T 246.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.115;DP=206;Dels=0.00;FS=27.414;HaplotypeScore=11.0054;MLEAC=1;MLEAF=0.500;MQ=23.71;MQ0=20;MQRankSum=-1.474;QD=1.19;ReadPosRankSum=-2.732;SB=-1.200e+02 GT:AD:DP:GQ:PL 0/1:105,101:206:99:276,0,1371 chrIX 391384 . T A 1256.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.331;DP=179;Dels=0.00;FS=90.953;HaplotypeScore=12.8148;MLEAC=1;MLEAF=0.500;MQ=21.92;MQ0=36;MQRankSum=5.728;QD=7.02;ReadPosRankSum=-1.113;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,70:179:99:1286,0,101 chrIX 391385 . A G 1261.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.110;DP=178;Dels=0.00;FS=85.999;HaplotypeScore=11.2375;MLEAC=1;MLEAF=0.500;MQ=21.94;MQ0=36;MQRankSum=6.245;QD=7.08;ReadPosRankSum=-1.290;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:109,69:178:64:1291,0,64 chrIX 391390 . A T 1063.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;DP=163;Dels=0.00;FS=88.337;HaplotypeScore=6.5891;MLEAC=1;MLEAF=0.500;MQ=21.46;MQ0=35;MQRankSum=7.141;QD=6.52;ReadPosRankSum=-2.495;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:103,60:163:88:1093,0,88 chrIX 391405 . A G 238.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;DP=109;Dels=0.03;FS=45.363;HaplotypeScore=15.9602;MLEAC=1;MLEAF=0.500;MQ=18.50;MQ0=34;MQRankSum=4.773;QD=2.18;ReadPosRankSum=-1.180;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,17:106:87:268,0,87 chrIX 391408 . G A 215.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;DP=95;Dels=0.00;FS=36.758;HaplotypeScore=15.9602;MLEAC=1;MLEAF=0.500;MQ=17.39;MQ0=33;MQRankSum=4.718;QD=2.26;ReadPosRankSum=-3.222;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,19:95:85:245,0,85 chrIX 391411 . A G 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;DP=102;Dels=0.00;FS=52.290;HaplotypeScore=20.1145;MLEAC=1;MLEAF=0.500;MQ=17.21;MQ0=34;MQRankSum=-4.996;QD=0.19;ReadPosRankSum=4.295;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:25,74:102:49:49,0,115 chrIX 391427 . G A 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;DP=140;Dels=0.00;FS=35.359;HaplotypeScore=45.8687;MLEAC=1;MLEAF=0.500;MQ=16.42;MQ0=44;MQRankSum=3.679;QD=0.34;ReadPosRankSum=-3.573;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,8:140:77:77,0,696 chrIX 391428 . C T 472.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;DP=148;Dels=0.00;FS=36.232;HaplotypeScore=52.2307;MLEAC=1;MLEAF=0.500;MQ=17.00;MQ0=46;MQRankSum=-3.101;QD=3.19;ReadPosRankSum=6.515;SB=-1.980e+02 GT:AD:DP:GQ:PL 0/1:40,103:148:99:502,0,267 chrIX 391444 . A G 286.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.507;DP=214;Dels=0.00;FS=108.653;HaplotypeScore=48.7629;MLEAC=1;MLEAF=0.500;MQ=17.74;MQ0=69;MQRankSum=5.991;QD=1.34;ReadPosRankSum=-3.706;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:179,31:214:99:316,0,872 chrIX 391453 . G T 811.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.521;DP=269;Dels=0.00;FS=39.297;HaplotypeScore=71.5066;MLEAC=1;MLEAF=0.500;MQ=19.68;MQ0=67;MQRankSum=-1.599;QD=3.01;ReadPosRankSum=2.509;SB=-4.890e+02 GT:AD:DP:GQ:PL 0/1:107,162:269:99:841,0,729 chrIX 391465 . T A 382.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.728;DP=341;Dels=0.00;FS=31.573;HaplotypeScore=59.2818;MLEAC=1;MLEAF=0.500;MQ=20.27;MQ0=71;MQRankSum=3.093;QD=1.12;ReadPosRankSum=3.549;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:264,77:341:99:412,0,1855 chrIX 391466 . A G 390.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.265;DP=342;Dels=0.00;FS=31.573;HaplotypeScore=56.9158;MLEAC=1;MLEAF=0.500;MQ=20.24;MQ0=71;MQRankSum=3.017;QD=1.14;ReadPosRankSum=3.962;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:262,78:342:99:420,0,1824 chrIX 391471 . A T 311.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650;DP=352;Dels=0.00;FS=29.577;HaplotypeScore=25.2339;MLEAC=1;MLEAF=0.500;MQ=20.10;MQ0=77;MQRankSum=3.440;QD=0.88;ReadPosRankSum=6.323;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:280,71:352:99:341,0,2088 chrIX 391486 . A G 220.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.158;DP=411;Dels=0.00;FS=62.314;HaplotypeScore=66.6740;MLEAC=1;MLEAF=0.500;MQ=19.27;MQ0=108;MQRankSum=4.273;QD=0.54;ReadPosRankSum=6.261;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:357,54:411:99:250,0,2499 chrIX 391493 . G C 185.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.615;DP=422;Dels=0.00;FS=25.130;HaplotypeScore=140.9751;MLEAC=1;MLEAF=0.500;MQ=19.07;MQ0=113;MQRankSum=-2.777;QD=0.44;ReadPosRankSum=0.235;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:330,92:422:99:215,0,2449 chrIX 391498 . G T 508.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.256;DP=423;Dels=0.00;FS=29.136;HaplotypeScore=82.8691;MLEAC=1;MLEAF=0.500;MQ=19.08;MQ0=112;MQRankSum=2.919;QD=1.20;ReadPosRankSum=-4.867;SB=-1.190e+02 GT:AD:DP:GQ:PL 0/1:305,118:423:99:538,0,2025 chrIX 391510 . T A 1114.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.004;DP=378;Dels=0.00;FS=22.073;HaplotypeScore=10.3207;MLEAC=1;MLEAF=0.500;MQ=18.80;MQ0=111;MQRankSum=2.240;QD=2.95;ReadPosRankSum=1.124;SB=-6.080e+02 GT:AD:DP:GQ:PL 0/1:235,143:378:99:1144,0,1001 chrIX 391511 . A G 1120.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.995;DP=373;Dels=0.00;FS=25.970;HaplotypeScore=9.5320;MLEAC=1;MLEAF=0.500;MQ=18.79;MQ0=111;MQRankSum=2.099;QD=3.00;ReadPosRankSum=1.561;SB=-6.190e+02 GT:AD:DP:GQ:PL 0/1:233,140:373:99:1150,0,944 chrIX 391516 . A T 968.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;DP=361;Dels=0.00;FS=11.404;HaplotypeScore=9.5320;MLEAC=1;MLEAF=0.500;MQ=18.73;MQ0=105;MQRankSum=2.048;QD=2.68;ReadPosRankSum=1.068;SB=-6.100e+02 GT:AD:DP:GQ:PL 0/1:245,113:361:99:998,0,1040 chrIX 391543 . G T 128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.705;DP=229;Dels=0.00;FS=18.157;HaplotypeScore=16.8980;MLEAC=1;MLEAF=0.500;MQ=17.95;MQ0=74;MQRankSum=-0.696;QD=0.56;ReadPosRankSum=5.630;SB=-1.310e+02 GT:AD:DP:GQ:PL 0/1:172,57:229:99:158,0,960 chrIX 391555 . T A 155.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.137;DP=137;Dels=0.00;FS=3.411;HaplotypeScore=5.4844;MLEAC=1;MLEAF=0.500;MQ=13.13;MQ0=62;MQRankSum=0.922;QD=1.13;ReadPosRankSum=-5.395;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,54:137:99:185,0,203 chrIX 391556 . A G 197.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.747;DP=129;Dels=0.00;FS=27.991;HaplotypeScore=3.8299;MLEAC=1;MLEAF=0.500;MQ=12.87;MQ0=62;MQRankSum=1.980;QD=1.53;ReadPosRankSum=-2.884;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,41:129:99:227,0,195 chrIX 391561 . A T 77.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.320;DP=104;Dels=0.00;FS=10.267;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=11.93;MQ0=53;MQRankSum=2.920;QD=0.74;ReadPosRankSum=-3.564;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,22:104:99:107,0,193 chrIX 391582 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.03;MQ0=6;MQRankSum=1.118;QD=0.73;ReadPosRankSum=2.012;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:3,20:23:6:48,6,0 chrIX 391618 . A G 64.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.296;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.16;MQ0=33;MQRankSum=1.056;QD=0.87;ReadPosRankSum=1.310;SB=-9.352e+01 GT:AD:DP:GQ:PL 1/1:1,72:74:12:97,12,0 chrIX 391635 . C T 282.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.049;DP=127;Dels=0.00;FS=4.076;HaplotypeScore=18.1002;MLEAC=1;MLEAF=0.500;MQ=17.46;MQ0=42;MQRankSum=-0.576;QD=2.22;ReadPosRankSum=6.314;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:39,87:127:31:312,0,31 chrIX 391655 . G C 141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;DP=275;Dels=0.00;FS=9.119;HaplotypeScore=55.8503;MLEAC=1;MLEAF=0.500;MQ=19.14;MQ0=68;MQRankSum=2.804;QD=0.51;ReadPosRankSum=-2.069;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:233,38:275:99:171,0,712 chrIX 391660 . G T 606.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.030;DP=330;Dels=0.00;FS=14.632;HaplotypeScore=71.8071;MLEAC=1;MLEAF=0.500;MQ=19.02;MQ0=80;MQRankSum=-1.652;QD=1.84;ReadPosRankSum=4.494;SB=-8.401e+01 GT:AD:DP:GQ:PL 0/1:177,153:330:99:636,0,508 chrIX 391700 . G C 658.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386;DP=525;Dels=0.00;FS=7.422;HaplotypeScore=98.2287;MLEAC=1;MLEAF=0.500;MQ=18.64;MQ0=114;MQRankSum=-0.418;QD=1.25;ReadPosRankSum=1.554;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:432,90:525:99:688,0,1433 chrIX 391705 . G T 239.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.925;DP=523;Dels=0.00;FS=5.585;HaplotypeScore=109.3482;MLEAC=1;MLEAF=0.500;MQ=18.76;MQ0=110;MQRankSum=1.657;QD=0.46;ReadPosRankSum=-6.427;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:395,126:523:99:269,0,1973 chrIX 391711 . G A 2006.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;DP=518;Dels=0.00;FS=1.161;HaplotypeScore=190.4278;MLEAC=1;MLEAF=0.500;MQ=18.84;MQ0=103;MQRankSum=-1.525;QD=3.87;ReadPosRankSum=3.203;SB=-4.130e+02 GT:AD:DP:GQ:PL 0/1:91,427:518:48:2036,0,48 chrIX 391717 . T A 639.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.229;DP=526;Dels=0.00;FS=19.786;HaplotypeScore=162.1587;MLEAC=1;MLEAF=0.500;MQ=18.43;MQ0=107;MQRankSum=3.293;QD=1.21;ReadPosRankSum=-3.189;SB=-1.920e+02 GT:AD:DP:GQ:PL 0/1:318,208:526:99:669,0,1329 chrIX 391718 . A G 651.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.526;DP=527;Dels=0.00;FS=21.170;HaplotypeScore=164.8942;MLEAC=1;MLEAF=0.500;MQ=18.42;MQ0=107;MQRankSum=2.630;QD=1.24;ReadPosRankSum=-3.888;SB=-2.100e+02 GT:AD:DP:GQ:PL 0/1:319,208:527:99:681,0,1289 chrIX 391723 . A T 264.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.551;DP=514;Dels=0.00;FS=28.965;HaplotypeScore=87.3386;MLEAC=1;MLEAF=0.500;MQ=18.35;MQ0=105;MQRankSum=1.897;QD=0.51;ReadPosRankSum=-6.022;SB=-1.620e+02 GT:AD:DP:GQ:PL 0/1:347,165:514:99:294,0,1665 chrIX 391750 . G T 649.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.269;DP=444;Dels=0.00;FS=15.457;HaplotypeScore=89.4124;MLEAC=1;MLEAF=0.500;MQ=18.14;MQ0=95;MQRankSum=1.630;QD=1.46;ReadPosRankSum=0.436;SB=-2.680e+02 GT:AD:DP:GQ:PL 0/1:284,158:442:99:679,0,1162 chrIX 391789 . A G 1648 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.244;DP=227;Dels=0.00;FS=16.746;HaplotypeScore=8.3785;MLEAC=2;MLEAF=1.00;MQ=21.61;MQ0=37;MQRankSum=-3.518;QD=7.26;ReadPosRankSum=5.504;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:16,210:227:90:1681,90,0 chrIX 391806 . C T 1529.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.238;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=68.2100;MLEAC=2;MLEAF=1.00;MQ=23.61;MQ0=32;MQRankSum=-0.507;QD=6.59;ReadPosRankSum=8.762;SB=-6.941e+02 GT:AD:DP:GQ:PL 1/1:47,180:232:1:1558,1,0 chrIX 391831 . T G 810.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;DP=337;Dels=0.00;FS=22.246;HaplotypeScore=87.1244;MLEAC=1;MLEAF=0.500;MQ=24.01;MQ0=25;MQRankSum=-0.943;QD=2.40;ReadPosRankSum=4.922;SB=-9.140e+02 GT:AD:DP:GQ:PL 0/1:176,160:336:99:840,0,2019 chrIX 391837 . G A 1950.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.853;DP=317;Dels=0.00;FS=7.394;HaplotypeScore=128.8975;MLEAC=1;MLEAF=0.500;MQ=24.63;MQ0=20;MQRankSum=-1.812;QD=6.15;ReadPosRankSum=8.465;SB=-1.597e+03 GT:AD:DP:GQ:PL 0/1:60,254:317:99:1980,0,507 chrIX 391843 . A T 65.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497;DP=303;Dels=0.00;FS=26.727;HaplotypeScore=29.3998;MLEAC=1;MLEAF=0.500;MQ=24.99;MQ0=20;MQRankSum=-1.192;QD=0.21;ReadPosRankSum=-5.015;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:265,38:303:95:95,0,2252 chrIX 391849 . A T 2271.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.141;DP=313;Dels=0.00;FS=12.466;HaplotypeScore=37.5792;MLEAC=1;MLEAF=0.500;MQ=24.40;MQ0=17;MQRankSum=2.074;QD=7.26;ReadPosRankSum=7.869;SB=-1.835e+03 GT:AD:DP:GQ:PL 0/1:54,257:313:99:2301,0,122 chrIX 391864 . A G 965.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.942;DP=335;Dels=0.00;FS=1.900;HaplotypeScore=11.6156;MLEAC=1;MLEAF=0.500;MQ=24.41;MQ0=21;MQRankSum=2.299;QD=2.88;ReadPosRankSum=5.566;SB=-8.550e+02 GT:AD:DP:GQ:PL 0/1:193,141:335:99:995,0,1596 chrIX 391876 . T G 432.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.731;DP=342;Dels=0.00;FS=6.810;HaplotypeScore=15.4162;MLEAC=1;MLEAF=0.500;MQ=24.59;MQ0=21;MQRankSum=0.170;QD=1.26;ReadPosRankSum=2.518;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:270,71:342:99:462,0,2254 chrIX 391894 . A T 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874;DP=455;Dels=0.00;FS=22.469;HaplotypeScore=96.8757;MLEAC=1;MLEAF=0.500;MQ=25.94;MQ0=35;MQRankSum=2.195;QD=0.15;ReadPosRankSum=-5.948;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:380,73:455:99:100,0,3773 chrIX 391896 . C T 419.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.446;DP=475;Dels=0.00;FS=3.445;HaplotypeScore=114.6982;MLEAC=1;MLEAF=0.500;MQ=26.16;MQ0=38;MQRankSum=2.591;QD=0.88;ReadPosRankSum=-8.629;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:382,89:475:99:449,0,3659 chrIX 391909 . A G 1202.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.919;DP=595;Dels=0.00;FS=39.813;HaplotypeScore=65.7741;MLEAC=1;MLEAF=0.500;MQ=29.38;MQ0=59;MQRankSum=4.261;QD=2.02;ReadPosRankSum=-3.600;SB=-2.350e+02 GT:AD:DP:GQ:PL 0/1:439,148:595:99:1232,0,4680 chrIX 391921 . T G 98.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.655;DP=681;Dels=0.00;FS=48.244;HaplotypeScore=70.1002;MLEAC=1;MLEAF=0.500;MQ=29.67;MQ0=69;MQRankSum=-1.730;QD=0.14;ReadPosRankSum=-1.200;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:577,103:681:99:128,0,7091 chrIX 391933 . C T 9138.01 filter AC=2;AF=1.00;AN=2;DP=690;Dels=0.00;FS=0.000;HaplotypeScore=83.3847;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=68;QD=13.24;SB=-3.556e+03 GT:AD:DP:GQ:PL 1/1:0,654:690:99:9138,1013,0 chrIX 392002 . G T 7652.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.790;DP=617;DS;Dels=0.00;FS=0.000;HaplotypeScore=50.4264;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=71;MQRankSum=0.751;QD=12.40;ReadPosRankSum=1.459;SB=-3.962e+03 GT:AD:DP:GQ:PL 1/1:5,606:617:99:7652,813,0 chrIX 392038 . G A 321.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;DP=249;DS;Dels=0.00;FS=35.419;HaplotypeScore=143.1631;MLEAC=1;MLEAF=0.500;MQ=27.28;MQ0=37;MQRankSum=-1.966;QD=1.29;ReadPosRankSum=-2.132;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:194,55:249:99:351,0,1590 chrIX 392041 . A G 916.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.256;DP=199;DS;Dels=0.00;FS=1.343;HaplotypeScore=78.0721;MLEAC=1;MLEAF=0.500;MQ=26.46;MQ0=33;MQRankSum=1.445;QD=4.60;ReadPosRankSum=4.957;SB=-4.820e+02 GT:AD:DP:GQ:PL 0/1:63,136:199:99:946,0,213 chrIX 392058 . C T 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.332;DP=113;DS;Dels=0.00;FS=7.576;HaplotypeScore=23.0397;MLEAC=1;MLEAF=0.500;MQ=21.05;MQ0=6;MQRankSum=-0.317;QD=0.36;ReadPosRankSum=0.187;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,20:113:71:71,0,422 chrIX 392074 . G A 1673 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.6213;MLEAC=2;MLEAF=1.00;MQ=21.15;MQ0=8;QD=10.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:1706,189,0 chrIX 392077 . G A 1789 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.6213;MLEAC=2;MLEAF=1.00;MQ=20.99;MQ0=8;QD=9.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:1822,204,0 chrIX 392083 . T G 1022.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.341;DP=222;Dels=0.00;FS=19.587;HaplotypeScore=9.9455;MLEAC=1;MLEAF=0.500;MQ=21.36;MQ0=9;MQRankSum=0.728;QD=4.60;ReadPosRankSum=4.711;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,148:222:99:1052,0,470 chrIX 392089 . G A 2161 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.652;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=73.3025;MLEAC=2;MLEAF=1.00;MQ=21.04;MQ0=11;MQRankSum=-0.662;QD=8.47;ReadPosRankSum=2.637;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:9,245:255:99:2194,201,0 chrIX 392095 . A T 749.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.214;DP=280;Dels=0.00;FS=16.604;HaplotypeScore=30.4039;MLEAC=1;MLEAF=0.500;MQ=21.06;MQ0=14;MQRankSum=-0.410;QD=2.68;ReadPosRankSum=-1.906;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:167,113:280:99:779,0,1107 chrIX 392096 . G A 807.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;DP=282;Dels=0.00;FS=13.579;HaplotypeScore=31.3618;MLEAC=1;MLEAF=0.500;MQ=21.05;MQ0=14;MQRankSum=-0.702;QD=2.86;ReadPosRankSum=-1.412;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:170,112:282:99:837,0,1207 chrIX 392101 . A T 1060.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;DP=298;Dels=0.00;FS=22.079;HaplotypeScore=22.7372;MLEAC=1;MLEAF=0.500;MQ=20.85;MQ0=18;MQRankSum=0.221;QD=3.56;ReadPosRankSum=0.949;SB=-1.910e+02 GT:AD:DP:GQ:PL 0/1:147,151:298:99:1090,0,1019 chrIX 392128 . G T 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.461;DP=332;Dels=0.00;FS=6.982;HaplotypeScore=33.9994;MLEAC=1;MLEAF=0.500;MQ=20.38;MQ0=34;MQRankSum=-1.343;QD=0.24;ReadPosRankSum=-5.993;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:233,99:332:99:109,0,2046 chrIX 392140 . T A 818.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.693;DP=331;Dels=0.00;FS=15.428;HaplotypeScore=18.8429;MLEAC=1;MLEAF=0.500;MQ=19.86;MQ0=45;MQRankSum=2.691;QD=2.47;ReadPosRankSum=-0.525;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:226,105:331:99:848,0,1313 chrIX 392141 . A G 818.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.637;DP=331;Dels=0.00;FS=15.428;HaplotypeScore=18.8429;MLEAC=1;MLEAF=0.500;MQ=19.86;MQ0=45;MQRankSum=2.298;QD=2.47;ReadPosRankSum=-0.811;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:226,105:331:99:848,0,1340 chrIX 392146 . A T 674.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;DP=322;Dels=0.00;FS=12.606;HaplotypeScore=10.6903;MLEAC=1;MLEAF=0.500;MQ=19.56;MQ0=45;MQRankSum=2.369;QD=2.09;ReadPosRankSum=-3.187;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:229,93:322:99:704,0,1318 chrIX 392164 . G A 179.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.728;DP=215;Dels=0.00;FS=21.009;HaplotypeScore=37.1661;MLEAC=1;MLEAF=0.500;MQ=18.21;MQ0=41;MQRankSum=-1.499;QD=0.83;ReadPosRankSum=-6.735;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:135,80:215:99:209,0,916 chrIX 392167 . A G 844.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;DP=209;Dels=0.00;FS=21.711;HaplotypeScore=37.9548;MLEAC=1;MLEAF=0.500;MQ=18.26;MQ0=40;MQRankSum=1.449;QD=4.04;ReadPosRankSum=8.929;SB=-1.810e+02 GT:AD:DP:GQ:PL 0/1:82,127:209:99:874,0,134 chrIX 392184 . C T 630 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.759;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=15.39;MQ0=45;MQRankSum=2.000;QD=4.88;ReadPosRankSum=3.527;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:10,110:129:75:663,75,0 chrIX 392209 . G T 455 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.507;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6945;MLEAC=2;MLEAF=1.00;MQ=13.62;MQ0=33;MQRankSum=1.005;QD=4.84;ReadPosRankSum=-0.545;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:14,80:94:54:488,54,0 chrIX 392245 . G A 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.089;DP=56;Dels=0.00;FS=12.324;HaplotypeScore=30.1715;MLEAC=1;MLEAF=0.500;MQ=16.81;MQ0=19;MQRankSum=-0.974;QD=0.86;ReadPosRankSum=-1.872;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,17:56:78:78,0,153 chrIX 392248 . A G 122.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.161;DP=56;Dels=0.00;FS=5.905;HaplotypeScore=36.1298;MLEAC=1;MLEAF=0.500;MQ=16.81;MQ0=19;MQRankSum=-1.160;QD=2.18;ReadPosRankSum=4.903;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,32:56:78:152,0,78 chrIX 392249 . G C 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.634;DP=59;Dels=0.00;FS=4.992;HaplotypeScore=48.9937;MLEAC=1;MLEAF=0.500;MQ=17.03;MQ0=19;MQRankSum=1.388;QD=0.66;ReadPosRankSum=-1.353;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,8:59:69:69,0,161 chrIX 392479 . G T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.728;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.81;MQ0=4;MQRankSum=-1.522;QD=0.36;ReadPosRankSum=0.335;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:4,48:52:6:50,6,0 chrIX 392554 . A G 444 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.39;MQ0=10;QD=10.33;SB=-6.701e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:60:477,60,0 chrIX 392571 . C T 457 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.10;MQ0=13;QD=8.62;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:1,52:53:60:490,60,0 chrIX 392578 . G A 157.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=18.83;MQ0=14;MQRankSum=2.077;QD=2.75;ReadPosRankSum=2.383;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:37,20:57:99:187,0,164 chrIX 392635 . A G 267.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.927;DP=56;Dels=0.00;FS=5.195;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.45;MQ0=13;MQRankSum=-1.007;QD=4.77;ReadPosRankSum=1.571;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:4,52:56:27:300,27,0 chrIX 392652 . C T 269.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.366;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=8.6201;MLEAC=2;MLEAF=1.00;MQ=19.84;MQ0=11;MQRankSum=-1.606;QD=4.72;ReadPosRankSum=2.113;SB=-1.379e+02 GT:AD:DP:GQ:PL 1/1:3,52:57:27:302,27,0 chrIX 392677 . G T 216.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.076;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=14.5859;MLEAC=2;MLEAF=1.00;MQ=20.40;MQ0=6;MQRankSum=-0.881;QD=5.14;ReadPosRankSum=-1.535;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:5,37:42:24:249,24,0 chrIX 392685 . T C 82.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;DP=47;Dels=0.02;FS=24.847;HaplotypeScore=29.8745;MLEAC=1;MLEAF=0.500;MQ=21.26;MQ0=6;MQRankSum=0.400;QD=1.74;ReadPosRankSum=-1.930;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,8:46:99:112,0,145 chrIX 392697 . C T 704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.247;DP=66;Dels=0.00;FS=1.151;HaplotypeScore=33.6672;MLEAC=2;MLEAF=1.00;MQ=26.33;MQ0=3;MQRankSum=3.107;QD=10.67;ReadPosRankSum=-1.644;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:18,47:66:84:737,84,0 chrIX 392776 . A G 4578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=212;Dels=0.00;FS=14.754;HaplotypeScore=7.7490;MLEAC=2;MLEAF=1.00;MQ=31.17;MQ0=0;MQRankSum=1.592;QD=21.59;ReadPosRankSum=2.967;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:3,209:212:99:4578,539,0 chrIX 392833 . T A 1327 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.00;MQ=34.57;MQ0=0;QD=20.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1360,156,0 chrIX 392834 . G C 1458 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;QD=24.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1491,156,0 chrIX 392873 . G C 95.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.32;MQ0=0;QD=15.88;SB=-7.630e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:128,15,0 chrIX 392929 . C T 563 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.722;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;MQRankSum=-0.578;QD=23.46;ReadPosRankSum=0.722;SB=-8.900e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:63:596,63,0 chrIX 392932 . G T 573 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;MQRankSum=0.706;QD=21.22;ReadPosRankSum=0.835;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:1,26:27:66:606,66,0 chrIX 392939 . C G 504 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;QD=18.67;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:60:537,60,0 chrIX 392966 . G T 473 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.45;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:54:506,54,0 chrIX 393592 . T A 3820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=171;Dels=0.00;FS=9.441;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;MQRankSum=-1.904;QD=22.34;ReadPosRankSum=2.421;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3820,417,0 chrIX 393622 . C T 4886.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=24.43;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4886,528,0 chrIX 393738 . C T 1487 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=17.70;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1520,165,0 chrIX 393745 . T G 1380 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;QD=16.63;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1413,153,0 chrIX 393746 . A T 1262 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=14.51;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1295,147,0 chrIX 393794 . G A 1392 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=90.2998;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=13.92;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1425,153,0 chrIX 393829 . T C 3068 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=20.32;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3101,333,0 chrIX 393889 . A C 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.5447;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=1.244;QD=24.18;ReadPosRankSum=1.710;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3797,414,0 chrIX 393931 . T A 2845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=7.4204;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=-1.732;QD=21.88;ReadPosRankSum=1.678;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2878,309,0 chrIX 393945 . C T 3150 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.0915;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=21.87;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3183,342,0 chrIX 394019 . A G 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=3.522;HaplotypeScore=3.4666;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=0.842;QD=24.64;ReadPosRankSum=1.708;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3548,384,0 chrIX 394105 . C T 3038 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=24.30;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3071,330,0 chrIX 394156 . G A 3890.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=23.87;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3890,414,0 chrIX 394211 . T G 4049.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.54;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4049,453,0 chrIX 394214 . G A 4324.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.64;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4324,462,0 chrIX 394293 . A G 4103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=181;Dels=0.00;FS=4.535;HaplotypeScore=12.2088;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.629;QD=22.67;ReadPosRankSum=1.713;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:4103,444,0 chrIX 394357 . T A 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=1.255;QD=23.30;ReadPosRankSum=1.607;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3249,345,0 chrIX 394371 . C G 3084 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.87;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:3117,336,0 chrIX 394423 . T C 3073 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=20.35;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3106,345,0 chrIX 394650 . T C 2450 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=132;Dels=0.00;FS=6.010;HaplotypeScore=5.8735;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=-0.605;QD=18.56;ReadPosRankSum=2.931;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:3,127:132:99:2483,270,0 chrIX 394651 . C T 2406 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.2962;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.37;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2439,267,0 chrIX 394655 . A G 2564 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.01;FS=3.385;HaplotypeScore=8.2057;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=0.430;QD=18.99;ReadPosRankSum=1.680;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2597,282,0 chrIX 394739 . A G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=133;Dels=0.00;FS=9.543;HaplotypeScore=15.9745;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.141;QD=22.69;ReadPosRankSum=2.412;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:2,129:133:99:3051,339,0 chrIX 394847 . T C 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.8509;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.523;QD=20.31;ReadPosRankSum=2.413;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2755,306,0 chrIX 395011 . T C 3643.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=23.06;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3643,390,0 chrIX 395073 . C A 2420 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.23;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2453,264,0 chrIX 395123 . T C 2934 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.96;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2967,321,0 chrIX 395125 . A G 2850 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.52;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2883,318,0 chrIX 395274 . C T 3521.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=22.86;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3521,372,0 chrIX 395275 . C T 3535.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=22.66;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3535,384,0 chrIX 395303 . G A 3546.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.9413;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.49;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3546,381,0 chrIX 395356 . C T 3927.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.23;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:3927,435,0 chrIX 395561 . T C 4860.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.59;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4860,534,0 chrIX 395574 . T C 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=0.226;QD=22.95;ReadPosRankSum=1.676;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4223,468,0 chrIX 395649 . G A 3442.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.3695;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.59;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3442,363,0 chrIX 395693 . T C 3204.99 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.5895;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.57;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3238,363,0 chrIX 395873 . A G 4092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=1.312;QD=24.80;ReadPosRankSum=1.690;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4092,441,0 chrIX 395916 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.5029;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=23.14;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2949,321,0 chrIX 395990 . G A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=25.95;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3399,363,0 chrIX 396021 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=3.650;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=-0.237;QD=22.14;ReadPosRankSum=1.661;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3268,366,0 chrIX 396038 . C T 2970 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=19.29;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3003,339,0 chrIX 396045 . T G 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=149;Dels=0.00;FS=5.939;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=-0.237;QD=18.19;ReadPosRankSum=2.953;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:2743,309,0 chrIX 396138 . C T 3078 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.1796;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=18.54;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3111,348,0 chrIX 396141 . T A 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.731;DP=161;Dels=0.00;FS=6.041;HaplotypeScore=6.1993;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;MQRankSum=-1.869;QD=17.79;ReadPosRankSum=2.956;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:2897,321,0 chrIX 396186 . A G 2047 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;QD=15.16;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2080,225,0 chrIX 396227 . A T 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;MQRankSum=-0.827;QD=20.70;ReadPosRankSum=1.680;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2827,300,0 chrIX 396307 . C A 4103.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=23.99;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4103,435,0 chrIX 396434 . C G 2868 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=21.09;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2901,330,0 chrIX 396463 . G A 2389 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.71;MQ0=0;QD=19.27;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2422,267,0 chrIX 396464 . T C 2443 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.71;MQ0=0;QD=19.70;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2476,267,0 chrIX 396489 . C T 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.257;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.2695;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;MQRankSum=-0.866;QD=15.13;ReadPosRankSum=0.164;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2288,230,0 chrIX 396504 . G A 2104 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;QD=13.66;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2137,228,0 chrIX 396505 . C T 2091 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;QD=13.58;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2124,228,0 chrIX 396557 . A G 3658.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=18.11;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:3658,411,0 chrIX 396639 . A G 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=166;Dels=0.00;FS=6.093;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=-0.667;QD=22.67;ReadPosRankSum=2.921;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3763,402,0 chrIX 396649 . G C 3548.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=22.31;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3548,402,0 chrIX 396753 . C T 3397.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=21.78;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3397,360,0 chrIX 396773 . T A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=21.78;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3420,378,0 chrIX 396834 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=19.15;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3231,354,0 chrIX 396851 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=174;Dels=0.00;FS=5.936;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-1.559;QD=19.73;ReadPosRankSum=2.888;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:3,168:174:99:3433,387,0 chrIX 396906 . A G 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.142;DP=161;Dels=0.00;FS=7.731;HaplotypeScore=15.0862;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=0.714;QD=21.48;ReadPosRankSum=2.419;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3459,375,0 chrIX 396988 . T A 3953.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=23.39;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3953,438,0 chrIX 397058 . A G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=-0.269;QD=19.45;ReadPosRankSum=1.711;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3164,339,0 chrIX 397063 . T C 2978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=163;Dels=0.00;FS=9.193;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=0.031;QD=18.27;ReadPosRankSum=2.957;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3011,321,0 chrIX 397090 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.8304;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=18.03;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3207,345,0 chrIX 397230 . T A 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.0953;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.367;QD=22.63;ReadPosRankSum=1.706;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3043,330,0 chrIX 397305 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=21.43;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2540,270,0 chrIX 397309 . A T 2422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=118;Dels=0.00;FS=3.027;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.052;QD=20.53;ReadPosRankSum=2.366;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2455,264,0 chrIX 397426 . G A 3717.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=22.39;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3717,399,0 chrIX 397439 . C A 3615.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.78;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3615,390,0 chrIX 397547 . T A 3962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=173;Dels=0.00;FS=5.689;HaplotypeScore=5.0121;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.436;QD=22.90;ReadPosRankSum=2.948;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3962,415,0 chrIX 397575 . C T 4479.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.57;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4479,492,0 chrIX 397618 . A G 4342.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.50;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4342,480,0 chrIX 397647 . C T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.65;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:3831,423,0 chrIX 397671 . G T 4079.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.6253;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.40;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4079,433,0 chrIX 397755 . C T 4407.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=22.1169;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.57;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4407,468,0 chrIX 397968 . T C 4089.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.56;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4089,438,0 chrIX 397974 . G A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.33;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:3832,426,0 chrIX 398084 . G A 4021.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.24;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4021,429,0 chrIX 398092 . C T 3955.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.0795;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=18.57;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:3955,423,0 chrIX 398416 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=23.46;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3800,411,0 chrIX 398457 . G C 3094 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=20.63;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3127,357,0 chrIX 398466 . T A 3150 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=20.32;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3183,342,0 chrIX 398482 . T G 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=0.381;QD=17.87;ReadPosRankSum=1.683;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2552,285,0 chrIX 398541 . C T 2046 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=18.60;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2079,219,0 chrIX 398822 . T C 5353.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.90;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5353,603,0 chrIX 398993 . G A 4999.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.3071;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.22;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4999,538,0 chrIX 399062 . C T 4453.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=19.9894;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.60;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:4453,474,0 chrIX 399128 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.77;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3518,384,0 chrIX 399239 . C T 2494 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=121.5266;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=18.47;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2527,276,0 chrIX 399281 . T C 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.265;DP=172;Dels=0.00;FS=4.610;HaplotypeScore=14.9305;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.312;QD=18.33;ReadPosRankSum=3.224;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:4,167:172:99:3186,357,0 chrIX 399357 . G A 4105.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.7534;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.19;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4105,438,0 chrIX 399370 . A C 3636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=164;Dels=0.00;FS=8.874;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-0.188;QD=22.17;ReadPosRankSum=2.389;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3636,390,0 chrIX 399414 . A G 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=3.885;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=0.291;QD=20.75;ReadPosRankSum=1.631;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2876,330,0 chrIX 399545 . A T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.23;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3810,414,0 chrIX 399657 . A C 3974.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.65;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3974,432,0 chrIX 399829 . T G 3310.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.5991;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=17.80;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3310,363,0 chrIX 399833 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.5924;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=17.77;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3341,360,0 chrIX 399998 . A G 4964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.277;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=11.7322;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=-0.775;QD=16.83;ReadPosRankSum=1.203;SB=-3.026e+03 GT:AD:DP:GQ:PL 1/1:5,290:295:99:4964,546,0 chrIX 400007 . T A 4112.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=203.9332;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=15.23;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:0,267:270:99:4112,447,0 chrIX 400141 . A G 6753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=286;Dels=0.00;FS=2.558;HaplotypeScore=9.4186;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=1.067;QD=23.61;ReadPosRankSum=2.961;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:3,283:286:99:6753,735,0 chrIX 400481 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.78;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3332,360,0 chrIX 400508 . C T 3618.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.16;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3618,387,0 chrIX 400841 . G C 3798.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.74;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3798,426,0 chrIX 401177 . T G 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=3.917;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.276;QD=22.80;ReadPosRankSum=1.657;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3179,351,0 chrIX 401259 . C T 2852 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.94;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2885,309,0 chrIX 401270 . C A 2797 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.12;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2830,309,0 chrIX 401375 . C T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8949;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.88;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3295,357,0 chrIX 401586 . A T 4027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.740;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.0874;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=2.594;QD=24.26;ReadPosRankSum=2.958;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:4027,408,0 chrIX 402014 . G A 4716.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.4956;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.59;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:4716,525,0 chrIX 402032 . C T 5078.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=4.7198;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.79;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5078,573,0 chrIX 402165 . T C 3832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.339;QD=21.29;ReadPosRankSum=1.713;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3832,423,0 chrIX 402236 . C T 5098.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.07;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:5098,558,0 chrIX 402302 . T C 4547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.178;DP=228;Dels=0.00;FS=6.435;HaplotypeScore=17.5490;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.255;QD=19.94;ReadPosRankSum=2.406;SB=-2.836e+03 GT:AD:DP:GQ:PL 1/1:2,224:228:99:4547,495,0 chrIX 402516 . G A 3713.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.6346;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.50;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3713,405,0 chrIX 402533 . A T 3958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.654;QD=22.36;ReadPosRankSum=1.673;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3958,429,0 chrIX 402823 . C T 1965 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.12;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1998,216,0 chrIX 403138 . T C 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.7579;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.343;QD=21.94;ReadPosRankSum=1.673;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3906,435,0 chrIX 403289 . A G 4724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=207;Dels=0.00;FS=2.951;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.842;QD=22.82;ReadPosRankSum=2.414;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:2,204:207:99:4724,516,0 chrIX 403447 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1021;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.34;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4038,435,0 chrIX 403510 . C T 5010.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.6979;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.63;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5010,540,0 chrIX 403760 . A G 5402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=237;Dels=0.00;FS=5.918;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.302;QD=22.79;ReadPosRankSum=2.936;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:3,233:237:99:5402,579,0 chrIX 403814 . T C 4185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=190;Dels=0.00;FS=6.821;HaplotypeScore=14.4336;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.294;QD=22.03;ReadPosRankSum=2.371;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:2,186:190:99:4185,474,0 chrIX 403850 . G A 3851.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.26;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3851,426,0 chrIX 403997 . G A 5521.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.76;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:5521,597,0 chrIX 404058 . C T 6405.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=23.6057;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.72;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:6405,688,0 chrIX 404267 . G A 6828.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.17;SB=-3.622e+03 GT:AD:DP:GQ:PL 1/1:0,308:308:99:6828,739,0 chrIX 404297 . G A 7253.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=13.5456;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.86;SB=-3.840e+03 GT:AD:DP:GQ:PL 1/1:0,304:304:99:7253,781,0 chrIX 404489 . T C 4384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=218;Dels=0.00;FS=4.334;HaplotypeScore=9.8967;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.551;QD=20.11;ReadPosRankSum=1.716;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:4384,495,0 chrIX 404597 . C G 4580.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.7413;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.79;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4580,501,0 chrIX 404738 . A T 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=153;Dels=0.00;FS=3.024;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.024;QD=24.75;ReadPosRankSum=2.401;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3786,411,0 chrIX 404792 . T C 4259.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=194;Dels=0.00;FS=3.912;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=1.083;QD=21.95;ReadPosRankSum=1.714;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:4259,465,0 chrIX 404802 . A G 4152.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=22.32;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4152,450,0 chrIX 405428 . T G 4386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=16.5961;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.751;QD=19.32;ReadPosRankSum=1.609;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4386,498,0 chrIX 405665 . T C 5372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.672;DP=246;Dels=0.00;FS=3.438;HaplotypeScore=16.8263;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.756;QD=21.84;ReadPosRankSum=-0.120;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:1,244:246:99:5372,579,0 chrIX 405821 . C T 4786.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.79;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4786,513,0 chrIX 405945 . A G 1909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-1.143;QD=19.09;ReadPosRankSum=1.697;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1942,210,0 chrIX 405973 . C T 2081 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.10;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2114,222,0 chrIX 406065 . G T 258 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=34.6378;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=6.62;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,37:38:33:291,33,0 chrIX 406070 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=27.1655;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=0.69;SB=-5.377e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:6:54,6,0 chrIX 406436 . T C 4147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.090;QD=24.68;ReadPosRankSum=2.406;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:2,166:168:99:4147,456,0 chrIX 406590 . T C 4885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=243;Dels=0.00;FS=2.933;HaplotypeScore=7.3790;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=-0.269;QD=20.10;ReadPosRankSum=2.419;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:2,240:243:99:4885,546,0 chrIX 406596 . G A 4975.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=19.82;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:4975,543,0 chrIX 406941 . T C 5717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=251;Dels=0.00;FS=9.201;HaplotypeScore=16.8969;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.594;QD=22.78;ReadPosRankSum=2.430;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:2,248:251:99:5717,619,0 chrIX 407041 . T C 4688.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.11;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4688,507,0 chrIX 407154 . A C 3701.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.91;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3701,417,0 chrIX 407232 . C A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.1429;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.25;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3760,408,0 chrIX 407593 . T C 4147.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.4602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4147,450,0 chrIX 407953 . C T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.6924;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.31;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3431,366,0 chrIX 408003 . A G 2468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=13.7998;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=1.296;QD=18.01;ReadPosRankSum=1.655;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2501,279,0 chrIX 408110 . T G 4559.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4559,519,0 chrIX 408521 . C T 4134.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4134,465,0 chrIX 408614 . C T 4713.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.80;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4713,522,0 chrIX 408665 . C T 5206.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.7925;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.66;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5206,556,0 chrIX 408854 . T C 3777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.2879;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.671;QD=21.71;ReadPosRankSum=1.712;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3777,417,0 chrIX 409106 . A T 3637.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.7072;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.15;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3637,405,0 chrIX 409125 . C T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.2002;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.96;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3290,345,0 chrIX 409388 . T C 2835 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.0942;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.86;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2868,318,0 chrIX 409496 . T C 4245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.899;QD=23.07;ReadPosRankSum=1.675;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4245,451,0 chrIX 409532 . C T 3905.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.97;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3905,426,0 chrIX 409601 . G T 2726 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.93;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2759,303,0 chrIX 409607 . C T 2972 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.95;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3005,318,0 chrIX 409700 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=4.519;HaplotypeScore=10.8616;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.979;QD=19.33;ReadPosRankSum=1.713;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3576,399,0 chrIX 409769 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.68;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3261,360,0 chrIX 409916 . T C 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=2.945;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.025;QD=22.76;ReadPosRankSum=2.356;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3573,396,0 chrIX 410027 . T C 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=3.398;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.141;QD=23.77;ReadPosRankSum=1.690;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3898,420,0 chrIX 410111 . G A 4185.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.7859;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.87;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4185,453,0 chrIX 410260 . G A 3282.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.79;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3282,345,0 chrIX 410511 . C G 2254 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=18.33;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2287,264,0 chrIX 410521 . A G 2464 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.71;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2497,270,0 chrIX 410784 . T C 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=3.342;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.306;QD=21.45;ReadPosRankSum=1.681;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2971,330,0 chrIX 410842 . T C 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=136;Dels=0.00;FS=6.015;HaplotypeScore=11.7275;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.400;QD=22.16;ReadPosRankSum=2.904;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3047,336,0 chrIX 411193 . A G 6258.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=276;Dels=0.00;FS=2.850;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.023;QD=22.67;ReadPosRankSum=2.334;SB=-2.934e+03 GT:AD:DP:GQ:PL 1/1:2,274:276:99:6258,699,0 chrIX 411481 . T A 6083.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=7.5854;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.73;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:6083,649,0 chrIX 411520 . A G 5064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=239;Dels=0.00;FS=3.025;HaplotypeScore=17.5282;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.145;QD=21.19;ReadPosRankSum=2.213;SB=-3.079e+03 GT:AD:DP:GQ:PL 1/1:2,237:239:99:5064,546,0 chrIX 411680 . A G 4352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.7142;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-2.040;QD=21.54;ReadPosRankSum=2.935;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:3,197:202:99:4352,471,0 chrIX 411868 . C T 1909 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.45;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1942,216,0 chrIX 411882 . C T 1703 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.80;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1736,198,0 chrIX 411905 . T C 1545 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=19.31;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1578,177,0 chrIX 412084 . A G 2051 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=25.32;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:2084,225,0 chrIX 412153 . A T 2708 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=22.76;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2741,294,0 chrIX 412186 . G A 2482 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=21.40;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2515,276,0 chrIX 412202 . T C 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=119;Dels=0.00;FS=2.897;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-0.281;QD=19.25;ReadPosRankSum=2.283;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2324,252,0 chrIX 412218 . A G 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=115;Dels=0.00;FS=12.405;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.360;QD=19.62;ReadPosRankSum=2.939;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2289,252,0 chrIX 412260 . G A 2089 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=19.17;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2122,225,0 chrIX 412306 . T C 2074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=102;Dels=0.00;FS=4.480;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-1.698;QD=20.33;ReadPosRankSum=1.698;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2107,234,0 chrIX 412312 . A G 1993 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.93;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2026,225,0 chrIX 412381 . A G 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=1.330;QD=21.34;ReadPosRankSum=1.701;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2466,273,0 chrIX 412585 . A G 2191 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.05;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2224,237,0 chrIX 412588 . A G 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=115;Dels=0.01;FS=3.718;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.628;QD=18.83;ReadPosRankSum=1.671;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2199,234,0 chrIX 412645 . G T 2787 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=19.77;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2820,306,0 chrIX 412802 . T C 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=152;Dels=0.00;FS=3.032;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-1.641;QD=22.30;ReadPosRankSum=2.417;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3390,378,0 chrIX 412962 . A G 3271.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.38;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3271,363,0 chrIX 413129 . G T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.90;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3367,363,0 chrIX 414362 . T C 4039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=182;Dels=0.00;FS=6.241;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.044;QD=22.19;ReadPosRankSum=2.422;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:4039,447,0 chrIX 414531 . G C 5310.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-3.024e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5310,591,0 chrIX 414641 . T C 5248.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.92;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5248,591,0 chrIX 414735 . C T 5265.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.50;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5265,579,0 chrIX 414918 . G A 3876.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.07;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3876,417,0 chrIX 415204 . A G 5171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=219;Dels=0.00;FS=3.321;HaplotypeScore=11.8624;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.295;QD=23.61;ReadPosRankSum=1.716;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:1,216:219:99:5171,573,0 chrIX 415315 . C T 5012.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.4669;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.18;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5012,540,0 chrIX 415367 . G C 4317.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=20.1097;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.48;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4317,471,0 chrIX 415528 . C T 4878.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.1748;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.78;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4878,537,0 chrIX 415609 . G T 4821.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=18.3489;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.14;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:4821,525,0 chrIX 415643 . C T 3834.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.9258;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.18;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3834,408,0 chrIX 415811 . A C 3952.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.5371;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.20;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3952,429,0 chrIX 415834 . C T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.80;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3771,420,0 chrIX 416075 . A T 4224.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.59;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4224,453,0 chrIX 416240 . G A 5055.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.40;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5055,538,0 chrIX 416282 . T A 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.442;DP=167;Dels=0.00;FS=3.477;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.882;QD=21.83;ReadPosRankSum=1.587;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3646,402,0 chrIX 416339 . C T 4102.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.42;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4102,438,0 chrIX 416543 . T C 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=3.869;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.222;QD=21.74;ReadPosRankSum=1.673;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2577,282,0 chrIX 416627 . T C 2464 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2497,276,0 chrIX 416694 . C G 2463 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.7857;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.46;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2496,264,0 chrIX 417992 . C T 6391.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=17.9066;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.66;SB=-3.539e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:6391,702,0 chrIX 418028 . G A 4982.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.8062;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.34;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4982,552,0 chrIX 418265 . C T 3715.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.73;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3715,411,0 chrIX 418524 . A G 3751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=168;Dels=0.00;FS=3.036;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.183;QD=22.33;ReadPosRankSum=2.362;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3751,405,0 chrIX 418530 . A G 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=160;Dels=0.00;FS=3.035;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-0.253;QD=22.39;ReadPosRankSum=2.296;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3583,387,0 chrIX 418547 . T A 3086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-1.422;QD=21.28;ReadPosRankSum=1.684;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3119,333,0 chrIX 418607 . G A 3933.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.4060;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.87;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3933,426,0 chrIX 418859 . G T 4792.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.38;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4792,528,0 chrIX 418993 . A G 3944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.3914;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.327;QD=21.79;ReadPosRankSum=1.713;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3944,423,0 chrIX 419095 . G A 4299.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=15.7076;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.99;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4299,465,0 chrIX 419141 . G A 3831.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.4150;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.80;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3831,414,0 chrIX 419420 . A G 1064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.917;QD=20.86;ReadPosRankSum=1.664;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1097,120,0 chrIX 419495 . A G 99.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;DP=26;Dels=0.00;FS=24.428;HaplotypeScore=13.4895;MLEAC=1;MLEAF=0.500;MQ=57.29;MQ0=0;MQRankSum=-0.139;QD=3.81;ReadPosRankSum=-2.136;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:15,10:26:99:129,0,127 chrIX 419726 . G A 2403 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.77;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2436,264,0 chrIX 419999 . A G 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;DP=192;Dels=0.00;FS=6.182;HaplotypeScore=11.7837;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.357;QD=20.51;ReadPosRankSum=2.372;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:3938,444,0 chrIX 420044 . A G 4022.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=25.5874;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.17;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4022,450,0 chrIX 420080 . T A 5029.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.1328;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.83;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5029,546,0 chrIX 420167 . T G 3472.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.84;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3472,387,0 chrIX 420215 . T C 4194.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.6075;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.19;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4194,462,0 chrIX 420376 . A G 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.4707;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.056;QD=21.54;ReadPosRankSum=1.690;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3554,387,0 chrIX 420518 . A G 4436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.522;DP=218;Dels=0.00;FS=16.724;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-0.208;QD=20.35;ReadPosRankSum=3.751;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:5,213:218:99:4436,483,0 chrIX 420530 . G A 4151.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.45;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4151,450,0 chrIX 420788 . C G 3464.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.79;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3464,372,0 chrIX 421122 . T A 3047 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.76;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3080,333,0 chrIX 421227 . G A 6553.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=15.7386;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.37;SB=-3.168e+03 GT:AD:DP:GQ:PL 1/1:0,292:293:99:6553,729,0 chrIX 421278 . C T 5012.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=17.0491;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.29;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:5012,573,0 chrIX 421475 . G A 6553.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=14.8343;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.52;SB=-3.234e+03 GT:AD:DP:GQ:PL 1/1:0,289:291:99:6553,706,0 chrIX 421490 . T G 6015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=8.3184;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-1.276;QD=20.32;ReadPosRankSum=1.650;SB=-3.403e+03 GT:AD:DP:GQ:PL 1/1:1,295:296:99:6015,675,0 chrIX 422134 . G A 5676.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=12.8022;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.26;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5676,607,0 chrIX 422341 . C T 7486.01 PASS AC=2;AF=1.00;AN=2;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=23.0662;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.39;SB=-3.869e+03 GT:AD:DP:GQ:PL 1/1:0,347:350:99:7486,822,0 chrIX 422694 . G A 6145.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.48;SB=-3.884e+03 GT:AD:DP:GQ:PL 1/1:0,300:300:99:6145,655,0 chrIX 422955 . A G 6022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=15.4170;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.026;QD=22.55;ReadPosRankSum=1.693;SB=-3.080e+03 GT:AD:DP:GQ:PL 1/1:1,265:267:99:6022,663,0 chrIX 423054 . T C 4291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.654;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.0615;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=2.421;QD=24.52;ReadPosRankSum=2.306;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:2,169:175:99:4291,444,0 chrIX 423451 . G A 3895.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.1470;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.91;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3895,414,0 chrIX 423556 . T C 3521.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=9.0084;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.12;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3521,390,0 chrIX 423935 . C T 6684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.284;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=20.8497;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.187;QD=23.21;ReadPosRankSum=0.751;SB=-3.759e+03 GT:AD:DP:GQ:PL 1/1:1,285:288:99:6684,712,0 chrIX 424253 . A G 4399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.6663;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.658;QD=23.40;ReadPosRankSum=1.713;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4399,477,0 chrIX 424322 . T C 4417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.340;DP=189;Dels=0.00;FS=9.153;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.670;QD=23.37;ReadPosRankSum=3.330;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:4,185:189:99:4417,480,0 chrIX 424401 . T C 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=163;Dels=0.00;FS=3.583;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.791;QD=23.08;ReadPosRankSum=1.689;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3762,402,0 chrIX 424438 . A G 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=174;Dels=0.00;FS=6.022;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.715;QD=21.97;ReadPosRankSum=2.960;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:3,170:174:99:3823,417,0 chrIX 424571 . C T 3445.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=22.8170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3445,372,0 chrIX 424605 . T A 4688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=194;Dels=0.00;FS=2.657;HaplotypeScore=15.0435;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=2.032;QD=24.16;ReadPosRankSum=2.386;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4688,504,0 chrIX 424642 . C T 5506.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.5619;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.61;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5506,594,0 chrIX 424776 . A G 4200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=181;Dels=0.00;FS=3.552;HaplotypeScore=11.2824;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.803;QD=23.20;ReadPosRankSum=1.674;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:4200,459,0 chrIX 424866 . T C 4708.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.5155;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.30;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4708,531,0 chrIX 424960 . G C 4649.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=22.68;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:4649,510,0 chrIX 424980 . C T 5186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=220;Dels=0.00;FS=3.512;HaplotypeScore=6.8191;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;MQRankSum=-0.016;QD=23.57;ReadPosRankSum=1.685;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5186,561,0 chrIX 425064 . A G 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=3.188;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;MQRankSum=-0.531;QD=21.01;ReadPosRankSum=1.686;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3206,366,0 chrIX 425130 . A T 2227 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=146;Dels=0.00;FS=3.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=0;MQRankSum=-2.012;QD=15.25;ReadPosRankSum=2.416;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2260,249,0 chrIX 425132 . G A 2185 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=0;QD=14.97;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2218,249,0 chrIX 425135 . C T 2201 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.42;MQ0=0;QD=14.48;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2234,246,0 chrIX 425137 . G T 2409 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=15.54;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2442,273,0 chrIX 425170 . T C 2698 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=15.07;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:2731,303,0 chrIX 425242 . G A 754.10 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.243;DP=200;Dels=0.00;FS=11.305;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=0;MQRankSum=0.503;QD=3.77;ReadPosRankSum=-11.202;SB=-4.451e+02 GT:AD:DP:GQ:PL 1/1:119,81:200:19:787,19,0 chrIX 425281 . G A 981 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=31.74;MQ0=0;QD=7.21;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:1014,120,0 chrIX 425284 . T G 945 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.78;MQ0=0;QD=7.05;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:978,117,0 chrIX 425287 . G A 1070 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.15;MQ0=0;QD=8.11;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1103,129,0 chrIX 425311 . T C 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.624;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;MQRankSum=-0.712;QD=14.27;ReadPosRankSum=1.705;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:1874,216,0 chrIX 425407 . G A 2964 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=23.34;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2997,327,0 chrIX 425460 . A G 3556.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=23.09;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3556,396,0 chrIX 425513 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=24.01;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3458,378,0 chrIX 425546 . A G 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=142;Dels=0.00;FS=10.311;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=1.266;QD=21.92;ReadPosRankSum=2.878;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:3,137:142:99:3145,345,0 chrIX 425620 . G A 4528.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=23.34;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4528,489,0 chrIX 425664 . C A 4157.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.0047;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.22;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4157,444,0 chrIX 425707 . T A 3792.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=22.31;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3792,402,0 chrIX 425741 . A G 3415.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.03;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3415,375,0 chrIX 425781 . A G 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.01;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;MQRankSum=0.108;QD=18.98;ReadPosRankSum=1.710;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3089,330,0 chrIX 425799 . T A 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.499;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;MQRankSum=-0.676;QD=19.03;ReadPosRankSum=1.708;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2735,294,0 chrIX 425817 . A G 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;MQRankSum=-0.636;QD=15.55;ReadPosRankSum=1.707;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2195,243,0 chrIX 425829 . C T 2131 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;QD=16.02;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2164,234,0 chrIX 425839 . C T 2148 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=16.27;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2181,243,0 chrIX 425875 . T C 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=3.165;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=0.424;QD=20.23;ReadPosRankSum=1.708;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2926,324,0 chrIX 425933 . G A 3941.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=21.77;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3941,435,0 chrIX 425941 . C T 3919.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=21.30;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3919,426,0 chrIX 425954 . G A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=19.75;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3496,378,0 chrIX 426001 . A G 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=177;Dels=0.00;FS=4.219;HaplotypeScore=11.3874;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=0.323;QD=19.84;ReadPosRankSum=1.713;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3511,387,0 chrIX 426032 . T C 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-1.555;QD=23.22;ReadPosRankSum=1.682;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:3260,354,0 chrIX 426151 . T A 3517.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=23.60;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3517,378,0 chrIX 426346 . T C 2430 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.494;DP=132;Dels=0.00;FS=3.155;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=1.053;QD=18.41;ReadPosRankSum=1.388;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2463,279,0 chrIX 426348 . G A 2297 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.916;DP=129;Dels=0.00;FS=3.072;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=1.287;QD=17.81;ReadPosRankSum=1.496;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2330,264,0 chrIX 426350 . T C 2089 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.02;FS=0.000;HaplotypeScore=15.7348;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-0.259;QD=16.19;ReadPosRankSum=1.678;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2122,255,0 chrIX 426351 . C G 2242 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.02;FS=0.000;HaplotypeScore=16.7282;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=17.65;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2275,264,0 chrIX 426391 . C T 1869 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=16.25;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1902,210,0 chrIX 426410 . G C 1545 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;QD=13.79;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1578,177,0 chrIX 426423 . A C 1892 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;QD=16.17;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1925,207,0 chrIX 426461 . C T 2012 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;QD=15.13;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2045,225,0 chrIX 426462 . A G 2007 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=14.87;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2040,228,0 chrIX 426471 . T C 2190 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=3.293;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=-1.030;QD=15.31;ReadPosRankSum=1.708;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2223,246,0 chrIX 426627 . C A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=23.19;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:3572,378,0 chrIX 426830 . G A 4337.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.7903;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=23.44;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4337,468,0 chrIX 426856 . T A 4325.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.6701;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=21.31;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4325,465,0 chrIX 426859 . T A 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=203;Dels=0.00;FS=3.533;HaplotypeScore=3.4721;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=-0.776;QD=20.71;ReadPosRankSum=1.715;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4205,462,0 chrIX 426874 . A G 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.3768;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.740;QD=19.94;ReadPosRankSum=1.715;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:4007,441,0 chrIX 427016 . A C 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=-0.644;QD=20.86;ReadPosRankSum=1.692;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3588,399,0 chrIX 427026 . C T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=20.36;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3543,393,0 chrIX 427189 . A G 2081 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=22.14;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2114,237,0 chrIX 427341 . A T 1925 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.1091;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=19.25;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1958,219,0 chrIX 427441 . G A 3343.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=22.74;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3343,360,0 chrIX 427464 . T C 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.736;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.1161;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-1.742;QD=21.89;ReadPosRankSum=2.955;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:3,154:159:99:3481,372,0 chrIX 427584 . A C 3978.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=23.96;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3978,438,0 chrIX 427600 . T C 4387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.795;DP=180;Dels=0.00;FS=4.325;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;MQRankSum=0.000;QD=24.37;ReadPosRankSum=3.456;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:5,175:180:99:4387,480,0 chrIX 427692 . G A 5827.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=18.9754;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=22.59;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,255:258:99:5827,631,0 chrIX 427818 . G A 176.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.361;DP=152;Dels=0.00;FS=24.233;HaplotypeScore=79.8951;MLEAC=1;MLEAF=0.500;MQ=38.19;MQ0=0;MQRankSum=-4.097;QD=1.16;ReadPosRankSum=-5.126;SB=-6.860e+02 GT:AD:DP:GQ:PL 0/1:55,92:152:99:206,0,233 chrIX 427825 . T A 661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=42.5610;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=0;MQRankSum=-1.528;QD=4.32;ReadPosRankSum=1.709;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:75:694,75,0 chrIX 427863 . T C 2232 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=13.86;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2265,243,0 chrIX 428035 . T A 4191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=0;MQRankSum=-1.035;QD=24.09;ReadPosRankSum=1.633;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4191,447,0 chrIX 428126 . G A 2818 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=19.85;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2851,321,0 chrIX 428138 . G A 2685 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=19.74;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2718,294,0 chrIX 428190 . A G 2012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.20;MQ0=0;MQRankSum=-1.409;QD=13.41;ReadPosRankSum=1.686;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2045,231,0 chrIX 428193 . T A 2058 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.34;MQ0=0;QD=13.63;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2091,228,0 chrIX 428213 . A G 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.81;MQ0=0;MQRankSum=-1.732;QD=12.99;ReadPosRankSum=1.707;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:1839,204,0 chrIX 428221 . A T 1750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=29.13;MQ0=0;MQRankSum=1.513;QD=12.32;ReadPosRankSum=1.708;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:1783,201,0 chrIX 428225 . G T 1610 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;QD=11.42;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1643,189,0 chrIX 428248 . G A 1703 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.53;MQ0=0;QD=13.41;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1736,198,0 chrIX 428267 . T C 1779 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;QD=14.23;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1812,207,0 chrIX 428297 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;QD=17.16;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2229,243,0 chrIX 428303 . A G 2293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;MQRankSum=1.487;QD=17.78;ReadPosRankSum=1.705;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2326,261,0 chrIX 428359 . A G 1890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.0035;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;MQRankSum=-1.699;QD=17.83;ReadPosRankSum=1.699;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,103:106:99:1923,219,0 chrIX 428394 . G A 2011 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=34.19;MQ0=0;QD=20.95;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2044,228,0 chrIX 428399 . C T 2040 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.02;MQ0=0;QD=21.25;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2073,228,0 chrIX 428473 . T G 2337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;MQRankSum=-0.908;QD=19.31;ReadPosRankSum=2.874;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:3,117:121:99:2370,247,0 chrIX 428479 . T C 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;MQRankSum=-1.704;QD=19.85;ReadPosRankSum=1.704;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2495,276,0 chrIX 428519 . A C 2818 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=18.91;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2851,309,0 chrIX 428609 . G A 1225 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=36.89;MQ0=0;QD=12.63;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1258,138,0 chrIX 428656 . C G 1673 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;QD=17.99;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1706,189,0 chrIX 428720 . T G 2692 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=4.873;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=-1.168;QD=20.87;ReadPosRankSum=1.678;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2725,291,0 chrIX 428722 . A G 2634 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=19.95;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2667,297,0 chrIX 428729 . C T 2475 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=19.19;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2508,273,0 chrIX 428913 . T C 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.589;QD=23.57;ReadPosRankSum=2.292;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3323,369,0 chrIX 428948 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=26.11;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3218,345,0 chrIX 428983 . A C 2441 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=21.23;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2474,276,0 chrIX 429026 . A T 2478 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=21.18;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2511,267,0 chrIX 429037 . T C 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=124;Dels=0.00;FS=6.128;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=-0.634;QD=21.52;ReadPosRankSum=2.911;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:2702,288,0 chrIX 429066 . A G 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-1.261;QD=21.47;ReadPosRankSum=1.709;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3232,351,0 chrIX 429213 . C T 2822 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=21.54;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2855,321,0 chrIX 429218 . G A 2793 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=21.82;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2826,312,0 chrIX 429223 . G A 2624 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=21.16;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2657,291,0 chrIX 429241 . T G 2574 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=21.10;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2607,306,0 chrIX 429315 . C T 3068 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=21.76;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3101,342,0 chrIX 429333 . C T 2955 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3271;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=21.89;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2988,321,0 chrIX 429337 . T G 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.949;DP=137;Dels=0.00;FS=9.421;HaplotypeScore=3.1424;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-0.081;QD=20.06;ReadPosRankSum=2.081;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2781,282,0 chrIX 429462 . T A 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;MQRankSum=0.000;QD=23.45;ReadPosRankSum=1.701;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2613,285,0 chrIX 429465 . G A 2318 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;QD=21.66;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2351,264,0 chrIX 429503 . G A 2143 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.6940;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=19.84;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2176,246,0 chrIX 429512 . T C 1909 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=18.72;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1942,219,0 chrIX 429534 . C T 1673 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;QD=16.56;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1706,183,0 chrIX 429541 . T C 1467 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=14.24;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1500,171,0 chrIX 429623 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.52;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2465,273,0 chrIX 429664 . A G 2127 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=21.70;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2160,237,0 chrIX 429743 . A G 1455 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=0;QD=24.25;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1488,162,0 chrIX 429951 . C T 1588 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=5.3416;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=15.57;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1621,177,0 chrIX 429953 . A G 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=96;Dels=0.00;FS=11.818;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;MQRankSum=-0.782;QD=14.43;ReadPosRankSum=2.065;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1418,162,0 chrIX 430024 . C A 2109 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.0906;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=16.48;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2142,228,0 chrIX 430092 . A G 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.5884;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-1.732;QD=23.43;ReadPosRankSum=1.668;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3795,414,0 chrIX 430199 . A G 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=137;Dels=0.00;FS=3.027;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;MQRankSum=0.118;QD=21.12;ReadPosRankSum=2.287;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2926,321,0 chrIX 430247 . G C 4445.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.6565;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=24.69;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4445,477,0 chrIX 430295 . G C 4177.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.9357;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=22.95;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4177,456,0 chrIX 430308 . C T 3650.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.99;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3650,402,0 chrIX 430403 . T C 2691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=3.375;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;MQRankSum=0.475;QD=21.53;ReadPosRankSum=1.620;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2724,300,0 chrIX 430418 . G T 2954 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=21.25;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2987,324,0 chrIX 430457 . C T 3168 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.32;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3201,360,0 chrIX 430460 . A G 3203 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.89;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3236,354,0 chrIX 430567 . A G 2315 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.3638;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=19.29;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2348,267,0 chrIX 430585 . G A 1636 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=15.01;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1669,195,0 chrIX 430586 . C G 1850 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=16.97;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:1883,207,0 chrIX 430825 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.32;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2712,291,0 chrIX 430912 . G A 4050.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.50;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4050,459,0 chrIX 431143 . C T 4652.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.80;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4652,513,0 chrIX 431302 . T A 3779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=160;Dels=0.00;FS=6.269;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.161;QD=23.62;ReadPosRankSum=1.712;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3779,408,0 chrIX 431389 . C T 4256.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.8142;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.01;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4256,459,0 chrIX 431611 . A C 6736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=0.153;QD=22.91;ReadPosRankSum=0.436;SB=-3.719e+03 GT:AD:DP:GQ:PL 1/1:1,293:294:99:6736,721,0 chrIX 431680 . T A 7145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=301;Dels=0.00;FS=5.959;HaplotypeScore=15.0461;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;MQRankSum=2.510;QD=23.74;ReadPosRankSum=2.937;SB=-3.555e+03 GT:AD:DP:GQ:PL 1/1:3,298:301:99:7145,763,0 chrIX 431747 . A G 4848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=2;MQRankSum=-0.213;QD=19.71;ReadPosRankSum=1.704;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:1,245:246:99:4848,540,0 chrIX 431755 . T C 4734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=240;Dels=0.00;FS=3.861;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=3;MQRankSum=0.807;QD=19.73;ReadPosRankSum=1.688;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:4734,534,0 chrIX 431874 . A C 3307.01 filter AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=21.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3307,351,0 chrIX 431922 . T G 2672 filter AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=29.36;MQ0=3;QD=17.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:2705,294,0 chrIX 431988 . A C 270 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=22.50;MQ0=2;MQRankSum=-1.732;QD=5.19;ReadPosRankSum=1.662;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:1,50:52:33:303,33,0 chrIX 432190 . A T 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.03;MQ0=32;QD=0.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:6:56,6,0 chrIX 432219 . C T 454 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=19.51;MQ0=29;QD=8.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:54:487,54,0 chrIX 432363 . G A 234 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=15;QD=8.67;SB=-8.795e+01 GT:AD:DP:GQ:PL 1/1:0,26:27:30:267,30,0 chrIX 432374 . C T 365 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=25.08;MQ0=20;QD=9.86;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:45:398,45,0 chrIX 432401 . C T 320.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;DP=89;Dels=0.00;FS=1.133;HaplotypeScore=5.7671;MLEAC=1;MLEAF=0.500;MQ=27.17;MQ0=41;MQRankSum=0.466;QD=3.60;ReadPosRankSum=-0.507;SB=-1.520e+02 GT:AD:DP:GQ:PL 0/1:48,41:89:99:350,0,550 chrIX 432630 . A T 662 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=13;QD=14.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:78:695,78,0 chrIX 433584 . T C 927 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=17.70;MQ0=17;QD=14.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:960,114,0 chrIX 433656 . A T 116.13 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.59;MQ0=2;QD=8.30;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:18:149,18,0 chrIX 433765 . T C 810 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.34;MQ0=14;QD=12.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,62:63:99:843,102,0 chrIX 433783 . C T 832 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.19;MQ0=15;QD=13.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:865,102,0 chrIX 433814 . T A 826 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.19;MQ0=15;QD=12.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:859,102,0 chrIX 437153 . A G 169.03 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=25.43;MQ0=1;QD=9.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:24:202,24,0 chrIX 437193 . C G 402 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=2;QD=15.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:48:435,48,0 chrIX 437345 . C T 115.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=14.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:15:148,15,0 chrIX 437352 . T C 112.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=14.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:15:145,15,0 chrIX 437353 . T C 98.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=12.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:15:131,15,0 chrIX 437359 . T A 93.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=11.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:15:126,15,0 chrIX 437360 . C A 67.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=8.44;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:100,12,0 chrIX 437361 . T C 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=9.19;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:106,12,0 chrIX 437363 . T C 98.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=12.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:15:131,15,0 chrIX 437365 . G A 98.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=12.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:15:131,15,0 chrIX 437366 . T C 101.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=12.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:15:134,15,0 chrIX 437371 . A G 106.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=13.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:15:139,15,0 chrIX 437372 . T C 95.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=11.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:15:128,15,0 chrIX 437373 . A G 107.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=13.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:15:140,15,0 chrIX 437375 . A G 109.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=13.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:15:142,15,0 chrIX 437404 . G A 193.03 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.40;MQ0=0;QD=8.77;SB=-4.069e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:24:226,24,0 chrIX 437412 . G T 180.03 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=0;QD=8.57;SB=-4.069e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:213,24,0 chrIX 437416 . A T 135.13 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.62;MQ0=0;QD=6.76;SB=-1.410e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:18:168,18,0 chrIX 437423 . C G 77.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.47;MQ0=0;QD=4.84;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:110,12,0 chrIX 437424 . A T 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.47;MQ0=0;QD=4.53;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:105,12,0 chrIX 437425 . G A 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.47;MQ0=0;QD=4.66;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:107,12,0 chrIX 437428 . G A 78.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=25.47;MQ0=0;QD=4.91;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:111,12,0 chrIX 437439 . T A 49.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=0;MQRankSum=1.448;QD=4.16;ReadPosRankSum=1.448;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:1,11:12:9:82,9,0 chrIX 437440 . A T 41.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=0;MQRankSum=1.448;QD=3.50;ReadPosRankSum=1.448;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:1,11:12:9:74,9,0 chrIX 437451 . A T 42.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;MQRankSum=-0.747;QD=5.37;ReadPosRankSum=0.747;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:1,7:8:9:75,9,0 chrIX 437459 . C G 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=0;QD=8.50;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:83,9,0 chrIX 437462 . G C 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=0;QD=8.33;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:82,9,0 chrIX 437467 . C A 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=0;QD=8.16;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:81,9,0 chrIX 437473 . A C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:51,6,0 chrIX 437475 . C G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrIX 437477 . T A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:51,6,0 chrIX 437478 . G A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:49,6,0 chrIX 437481 . A G 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:49,6,0 chrIX 437604 . T A 203.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.290;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.15;MQ0=6;MQRankSum=1.448;QD=11.28;ReadPosRankSum=-1.738;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,11:18:27:236,27,0 chrIX 437808 . G A 34.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.72;MQ0=0;QD=4.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:9:67,9,0 chrIX 437810 . T C 34.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.01;MQ0=0;QD=5.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:7:9:67,9,0 chrIX 437819 . T C 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.42;MQ0=0;QD=4.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:44,6,0 chrIX 438138 . C T 240 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=24.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:30:273,30,0 chrIX 438147 . G A 159.06 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=22.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:21:192,21,0 chrIX 438150 . T C 144.06 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=20.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:21:177,21,0 chrIX 438249 . A T 97.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;DP=12;Dels=0.00;FS=3.802;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.42;MQ0=0;MQRankSum=0.869;QD=8.09;ReadPosRankSum=-1.448;SB=-4.288e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:18:130,18,0 chrIX 438270 . A G 173.01 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.12;MQ0=0;QD=12.36;SB=-9.799e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:27:206,27,0 chrIX 438278 . C T 89.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;DP=18;Dels=0.00;FS=18.921;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.03;MQ0=0;MQRankSum=-3.419;QD=4.94;ReadPosRankSum=3.231;SB=-2.198e+01 GT:AD:DP:GQ:PL 0/1:6,12:18:77:119,0,77 chrIX 438283 . G A 235 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.84;MQ0=0;QD=12.37;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:33:268,33,0 chrIX 438319 . G A 140.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.139;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.40;MQ0=0;MQRankSum=-0.545;QD=4.00;ReadPosRankSum=1.337;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:24:173,24,0 chrIX 438482 . G A 300 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=0;QD=15.79;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:39:333,39,0 chrIX 438488 . G T 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.937;DP=22;Dels=0.00;FS=17.779;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=24.13;MQ0=0;MQRankSum=-3.339;QD=0.82;ReadPosRankSum=2.471;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,9:22:48:48,0,214 chrIX 438499 . C T 485 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=24.56;MQ0=0;QD=14.70;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:60:518,60,0 chrIX 438552 . A G 547.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DP=57;Dels=0.00;FS=9.099;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.87;MQ0=0;MQRankSum=0.232;QD=9.60;ReadPosRankSum=2.660;SB=-2.600e+02 GT:AD:DP:GQ:PL 0/1:14,43:57:98:577,0,98 chrIX 438553 . G C 69.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.495;DP=57;Dels=0.00;FS=9.099;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.87;MQ0=0;MQRankSum=0.751;QD=1.21;ReadPosRankSum=-2.438;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:43,14:57:99:99,0,600 chrIX 438567 . C T 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=22.72;MQ0=0;MQRankSum=1.114;QD=0.59;ReadPosRankSum=0.755;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:38,11:49:59:59,0,458 chrIX 438570 . A C 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.247;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=22.57;MQ0=0;MQRankSum=0.546;QD=0.73;ReadPosRankSum=1.739;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:38,10:48:65:65,0,413 chrIX 438571 . T G 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=22.42;MQ0=0;MQRankSum=1.443;QD=0.66;ReadPosRankSum=1.885;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:37,10:47:61:61,0,422 chrIX 438589 . G A 62.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;DP=50;Dels=0.00;FS=5.116;HaplotypeScore=3.3394;MLEAC=1;MLEAF=0.500;MQ=23.49;MQ0=0;MQRankSum=3.076;QD=1.24;ReadPosRankSum=1.382;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:27,23:50:92:92,0,195 chrIX 438600 . T C 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;DP=56;Dels=0.00;FS=4.711;HaplotypeScore=8.9542;MLEAC=1;MLEAF=0.500;MQ=25.43;MQ0=0;MQRankSum=-3.383;QD=0.91;ReadPosRankSum=-2.095;SB=-6.498e-03 GT:AD:DP:GQ:PL 0/1:40,16:56:81:81,0,202 chrIX 438622 . G T 300 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.67;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:36:333,36,0 chrIX 438624 . C T 298 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.62;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:36:331,36,0 chrIX 438630 . G A 316 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.75;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:36:349,36,0 chrIX 438634 . C A 248 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.59;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,54:54:33:281,33,0 chrIX 438636 . T G 292 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.039;QD=5.31;ReadPosRankSum=1.669;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:1,54:55:36:325,36,0 chrIX 438638 . C G 299 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.44;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:36:332,36,0 chrIX 438644 . G T 333 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=5.12;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:39:366,39,0 chrIX 438663 . T C 383 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=4.97;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:45:416,45,0 chrIX 438666 . C G 380 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=5.59;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:45:413,45,0 chrIX 438668 . C G 371 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=5.46;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:45:404,45,0 chrIX 438669 . T A 420 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=6.18;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:45:453,45,0 chrIX 438672 . A G 376 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=5.53;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:45:409,45,0 chrIX 438674 . T G 376 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=5.53;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:45:409,45,0 chrIX 438677 . T C 398 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=4.97;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:45:431,45,0 chrIX 438686 . G A 380 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=5.07;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:45:413,45,0 chrIX 438690 . C T 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;DP=75;Dels=0.00;FS=66.192;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.21;MQ0=0;MQRankSum=-0.683;QD=0.53;ReadPosRankSum=-0.483;SB=1.45 GT:AD:DP:GQ:PL 0/1:68,7:75:70:70,0,232 chrIX 438694 . T C 99.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;DP=68;Dels=0.00;FS=52.882;HaplotypeScore=40.5933;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=1.158;QD=1.46;ReadPosRankSum=1.701;SB=-4.017e+00 GT:AD:DP:GQ:PL 0/1:9,59:68:81:129,0,81 chrIX 438718 . T G 269 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=4.48;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:33:302,33,0 chrIX 438726 . G A 150.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.344;DP=59;Dels=0.00;FS=76.969;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.85;MQ0=0;MQRankSum=-0.741;QD=2.54;ReadPosRankSum=0.119;SB=0.782 GT:AD:DP:GQ:PL 0/1:46,13:59:99:180,0,119 chrIX 438732 . C T 154.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;DP=55;Dels=0.00;FS=73.311;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.94;MQ0=0;MQRankSum=0.664;QD=2.80;ReadPosRankSum=0.545;SB=0.782 GT:AD:DP:GQ:PL 0/1:42,13:55:93:184,0,93 chrIX 438733 . G T 147.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.517;DP=53;Dels=0.00;FS=71.371;HaplotypeScore=23.1962;MLEAC=1;MLEAF=0.500;MQ=27.90;MQ0=0;MQRankSum=0.651;QD=2.77;ReadPosRankSum=0.486;SB=0.782 GT:AD:DP:GQ:PL 0/1:40,13:53:86:177,0,86 chrIX 438737 . C G 57.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;DP=52;Dels=0.00;FS=81.337;HaplotypeScore=23.1962;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=0;MQRankSum=3.380;QD=1.10;ReadPosRankSum=0.367;SB=-7.017e+00 GT:AD:DP:GQ:PL 0/1:16,36:52:87:87,0,172 chrIX 438740 . A G 136.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;DP=50;Dels=0.00;FS=78.606;HaplotypeScore=23.1962;MLEAC=1;MLEAF=0.500;MQ=27.05;MQ0=0;MQRankSum=-0.905;QD=2.72;ReadPosRankSum=-0.260;SB=0.782 GT:AD:DP:GQ:PL 0/1:34,16:50:93:166,0,93 chrIX 438749 . T A 154.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;DP=42;Dels=0.00;FS=69.186;HaplotypeScore=18.3637;MLEAC=1;MLEAF=0.500;MQ=26.21;MQ0=0;MQRankSum=-1.309;QD=3.67;ReadPosRankSum=-0.623;SB=0.782 GT:AD:DP:GQ:PL 0/1:24,18:42:67:184,0,67 chrIX 438758 . T C 230 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.19;MQ0=0;QD=5.61;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:30:263,30,0 chrIX 438765 . A G 223 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.70;MQ0=1;QD=6.03;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:30:256,30,0 chrIX 438766 . C T 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;DP=38;Dels=0.00;FS=45.777;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.47;MQ0=1;MQRankSum=2.427;QD=1.21;ReadPosRankSum=0.047;SB=-3.722e+01 GT:AD:DP:GQ:PL 0/1:23,15:38:76:76,0,129 chrIX 438768 . C A 91.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.025;DP=41;Dels=0.00;FS=39.786;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.01;MQ0=1;MQRankSum=-2.599;QD=2.22;ReadPosRankSum=1.286;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:18,23:41:99:121,0,139 chrIX 438775 . T C 208.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.209;DP=46;Dels=0.00;FS=30.939;HaplotypeScore=17.4946;MLEAC=1;MLEAF=0.500;MQ=23.07;MQ0=1;MQRankSum=4.032;QD=4.52;ReadPosRankSum=-2.478;SB=-1.782e+02 GT:AD:DP:GQ:PL 0/1:25,21:46:99:238,0,112 chrIX 438892 . A G 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.449;DP=82;Dels=0.00;FS=16.825;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=29.35;MQ0=0;MQRankSum=2.112;QD=19.77;ReadPosRankSum=3.488;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:5,77:82:99:1654,180,0 chrIX 438930 . G C 1056 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=16.50;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1089,129,0 chrIX 438951 . A G 670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=0;MQRankSum=-1.308;QD=13.67;ReadPosRankSum=1.662;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:78:703,78,0 chrIX 438972 . G A 555 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;QD=11.10;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:69:588,69,0 chrIX 438974 . A G 242.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;DP=53;Dels=0.00;FS=94.863;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.25;MQ0=0;MQRankSum=0.300;QD=4.57;ReadPosRankSum=0.029;SB=-2.376e+00 GT:AD:DP:GQ:PL 0/1:37,16:53:99:272,0,182 chrIX 438993 . A G 107.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;DP=57;Dels=0.00;FS=150.829;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=27.92;MQ0=0;MQRankSum=-0.995;QD=1.88;ReadPosRankSum=2.717;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,37:57:99:137,0,224 chrIX 438999 . A C 421 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.296;DP=57;Dels=0.00;FS=20.082;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;MQRankSum=-0.484;QD=7.39;ReadPosRankSum=3.296;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:4,53:57:51:454,51,0 chrIX 439002 . A T 456 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=8.14;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:54:489,54,0 chrIX 439005 . G T 164.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;DP=57;Dels=0.00;FS=133.436;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.92;MQ0=0;MQRankSum=0.915;QD=2.88;ReadPosRankSum=0.263;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:42,15:57:99:194,0,189 chrIX 439007 . G A 453 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=7.95;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:54:486,54,0 chrIX 439011 . C T 428 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=6.69;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:51:461,51,0 chrIX 439033 . C A 435 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;QD=8.21;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:51:468,51,0 chrIX 439034 . A G 424 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;QD=8.00;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:51:457,51,0 chrIX 439037 . A G 125.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.455;DP=53;Dels=0.00;FS=147.948;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=27.63;MQ0=0;MQRankSum=-0.206;QD=2.36;ReadPosRankSum=0.781;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:23,30:53:99:155,0,174 chrIX 439043 . G A 140.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.086;DP=51;Dels=0.00;FS=140.586;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=27.57;MQ0=0;MQRankSum=1.158;QD=2.75;ReadPosRankSum=0.526;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:30,21:51:99:170,0,165 chrIX 439044 . T C 131.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;DP=47;Dels=0.00;FS=130.987;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=27.87;MQ0=0;MQRankSum=-0.717;QD=2.79;ReadPosRankSum=0.118;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:21,26:47:99:161,0,177 chrIX 439051 . A G 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.204;DP=42;Dels=0.00;FS=101.507;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=27.73;MQ0=0;MQRankSum=0.794;QD=1.10;ReadPosRankSum=1.358;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,17:42:76:76,0,101 chrIX 439054 . G A 146.06 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;QD=4.17;SB=-3.581e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:21:179,21,0 chrIX 439063 . T C 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=1.53;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:0,17:30:9:78,9,0 chrIX 439067 . G T 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.960;DP=29;Dels=0.00;FS=78.316;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.15;MQ0=0;MQRankSum=1.338;QD=0.46;ReadPosRankSum=0.680;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:16,13:29:43:43,0,70 chrIX 439071 . A G 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.154;DP=26;Dels=0.00;FS=67.160;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.36;MQ0=0;MQRankSum=2.000;QD=0.51;ReadPosRankSum=-0.205;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:13,13:26:41:43,0,41 chrIX 439072 . A T 75.51 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.36;MQ0=0;QD=2.90;SB=-2.895e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:12:108,12,0 chrIX 439073 . G A 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;DP=27;Dels=0.00;FS=73.023;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.42;MQ0=0;MQRankSum=0.073;QD=0.53;ReadPosRankSum=0.315;SB=-3.008e+00 GT:AD:DP:GQ:PL 0/1:14,13:27:44:44,0,45 chrIX 439126 . A G 81.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=21.19;MQ0=0;MQRankSum=-0.751;QD=9.03;ReadPosRankSum=-0.751;SB=-2.407e+01 GT:AD:DP:GQ:PL 1/1:1,8:9:15:114,15,0 chrIX 439132 . A G 103.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.393;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;MQRankSum=-0.696;QD=10.31;ReadPosRankSum=-1.044;SB=-2.049e+01 GT:AD:DP:GQ:PL 1/1:1,9:10:18:136,18,0 chrIX 439136 . T G 159.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.268;DP=13;Dels=0.00;FS=3.736;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;MQRankSum=-0.592;QD=12.23;ReadPosRankSum=0.930;SB=-2.500e+01 GT:AD:DP:GQ:PL 1/1:3,10:13:24:192,24,0 chrIX 439141 . G A 335 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.347;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.07;MQ0=0;MQRankSum=0.347;QD=16.75;ReadPosRankSum=-1.561;SB=-5.084e+01 GT:AD:DP:GQ:PL 1/1:1,19:20:42:368,42,0 chrIX 439158 . T G 930 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.5640;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=20.67;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:963,108,0 chrIX 439447 . C A 104.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;DP=31;Dels=0.00;FS=62.932;HaplotypeScore=18.2357;MLEAC=1;MLEAF=0.500;MQ=21.07;MQ0=0;MQRankSum=1.581;QD=3.36;ReadPosRankSum=-0.861;SB=-3.600e+01 GT:AD:DP:GQ:PL 0/1:13,18:31:80:134,0,80 chrIX 439449 . C A 156.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.850;DP=29;Dels=0.00;FS=7.164;HaplotypeScore=16.2495;MLEAC=2;MLEAF=1.00;MQ=20.93;MQ0=0;MQRankSum=-0.387;QD=5.38;ReadPosRankSum=-0.387;SB=-6.406e+01 GT:AD:DP:GQ:PL 1/1:2,27:29:21:189,21,0 chrIX 439487 . G A 65.51 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.44;MQ0=1;QD=3.85;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:98,12,0 chrIX 439507 . G A 75.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.204;DP=32;Dels=0.00;FS=10.017;HaplotypeScore=3.5242;MLEAC=1;MLEAF=0.500;MQ=22.47;MQ0=2;MQRankSum=-3.208;QD=2.34;ReadPosRankSum=3.906;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:16,15:32:99:105,0,299 chrIX 439512 . T A 259.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.028;DP=36;Dels=0.00;FS=8.402;HaplotypeScore=7.8793;MLEAC=1;MLEAF=0.500;MQ=23.71;MQ0=2;MQRankSum=3.331;QD=7.19;ReadPosRankSum=-1.630;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,13:36:99:289,0,154 chrIX 439517 . G A 186.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;DP=37;Dels=0.00;FS=2.127;HaplotypeScore=7.8793;MLEAC=1;MLEAF=0.500;MQ=23.39;MQ0=3;MQRankSum=-1.873;QD=5.03;ReadPosRankSum=2.012;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:16,20:37:99:216,0,275 chrIX 439556 . T A 457.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.680;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=28.3881;MLEAC=1;MLEAF=0.500;MQ=23.00;MQ0=9;MQRankSum=-1.490;QD=5.94;ReadPosRankSum=-1.171;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:34,43:77:99:487,0,513 chrIX 439574 . A G 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;DP=108;Dels=0.00;FS=6.905;HaplotypeScore=29.9202;MLEAC=1;MLEAF=0.500;MQ=21.92;MQ0=11;MQRankSum=3.658;QD=0.74;ReadPosRankSum=-3.117;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,11:108:99:110,0,1156 chrIX 439582 . G A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.251;DP=109;Dels=0.00;FS=4.597;HaplotypeScore=39.4348;MLEAC=1;MLEAF=0.500;MQ=21.63;MQ0=11;MQRankSum=3.764;QD=0.24;ReadPosRankSum=-4.834;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,9:109:56:56,0,1208 chrIX 439608 . T C 1158 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.077;DP=91;Dels=0.00;FS=16.076;HaplotypeScore=25.6589;MLEAC=2;MLEAF=1.00;MQ=19.72;MQ0=11;MQRankSum=-1.371;QD=12.73;ReadPosRankSum=-0.539;SB=-1.301e+01 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1191,141,0 chrIX 439679 . G C 48.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=4.7851;MLEAC=1;MLEAF=0.500;MQ=20.73;MQ0=1;MQRankSum=0.466;QD=4.03;ReadPosRankSum=2.359;SB=-3.442e+01 GT:AD:DP:GQ:PL 0/1:5,7:12:7:78,0,7 chrIX 439700 . T G 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DP=17;Dels=0.00;FS=9.031;HaplotypeScore=5.4253;MLEAC=1;MLEAF=0.500;MQ=22.79;MQ0=1;MQRankSum=-0.054;QD=1.18;ReadPosRankSum=-1.247;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:7,10:17:50:50,0,72 chrIX 439707 . C G 63.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.938;DP=21;Dels=0.00;FS=6.952;HaplotypeScore=13.2161;MLEAC=1;MLEAF=0.500;MQ=22.78;MQ0=1;MQRankSum=-0.289;QD=3.00;ReadPosRankSum=-0.124;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:7,14:21:64:93,0,64 chrIX 439718 . G A 110.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;DP=21;Dels=0.00;FS=5.464;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.61;MQ0=1;MQRankSum=-0.212;QD=5.24;ReadPosRankSum=1.588;SB=-1.804e+01 GT:AD:DP:GQ:PL 0/1:4,17:21:40:140,0,40 chrIX 439719 . G A 131.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.646;DP=21;Dels=0.00;FS=5.464;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.61;MQ0=1;MQRankSum=0.318;QD=6.24;ReadPosRankSum=1.799;SB=-2.222e+01 GT:AD:DP:GQ:PL 0/1:4,17:21:41:161,0,41 chrIX 439721 . T G 113.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;DP=21;Dels=0.00;FS=5.464;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.61;MQ0=1;MQRankSum=0.847;QD=5.38;ReadPosRankSum=2.329;SB=-2.122e+01 GT:AD:DP:GQ:PL 0/1:4,17:21:41:143,0,41 chrIX 439722 . G A 115.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;DP=21;Dels=0.00;FS=5.464;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.61;MQ0=1;MQRankSum=0.529;QD=5.48;ReadPosRankSum=2.329;SB=-2.237e+01 GT:AD:DP:GQ:PL 0/1:4,17:21:42:145,0,42 chrIX 439728 . A G 204.01 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=1;QD=6.38;SB=-5.602e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:27:237,27,0 chrIX 439739 . A G 240 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.7669;MLEAC=2;MLEAF=1.00;MQ=24.23;MQ0=0;MQRankSum=-0.044;QD=6.15;ReadPosRankSum=1.644;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:1,38:39:33:273,33,0 chrIX 439742 . T G 114.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.161;DP=40;Dels=0.00;FS=7.586;HaplotypeScore=1.9783;MLEAC=1;MLEAF=0.500;MQ=24.07;MQ0=0;MQRankSum=2.161;QD=2.85;ReadPosRankSum=-0.958;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,23:40:87:144,0,87 chrIX 439745 . G A 140.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.094;DP=45;Dels=0.00;FS=2.746;HaplotypeScore=2.8449;MLEAC=1;MLEAF=0.500;MQ=23.88;MQ0=0;MQRankSum=2.644;QD=3.11;ReadPosRankSum=-0.984;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:16,29:45:80:170,0,80 chrIX 439750 . A T 341 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=17.0325;MLEAC=2;MLEAF=1.00;MQ=23.63;MQ0=0;QD=6.31;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:45:374,45,0 chrIX 439767 . A G 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.947;DP=65;Dels=0.00;FS=6.368;HaplotypeScore=3.9096;MLEAC=1;MLEAF=0.500;MQ=24.08;MQ0=0;MQRankSum=-1.191;QD=0.38;ReadPosRankSum=1.253;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:50,15:65:55:55,0,419 chrIX 439771 . G T 437.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.533;DP=63;Dels=0.00;FS=13.222;HaplotypeScore=7.8032;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=0;MQRankSum=0.339;QD=6.94;ReadPosRankSum=1.759;SB=-3.022e+00 GT:AD:DP:GQ:PL 1/1:3,60:63:3:467,3,0 chrIX 439772 . A G 499 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.8138;MLEAC=2;MLEAF=1.00;MQ=23.63;MQ0=0;QD=8.05;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,60:62:63:532,63,0 chrIX 439776 . A G 394.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=10.7074;MLEAC=1;MLEAF=0.500;MQ=23.81;MQ0=0;MQRankSum=1.992;QD=6.16;ReadPosRankSum=0.752;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,48:64:73:424,0,73 chrIX 439781 . A T 485.02 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.915;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=11.6808;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=0;MQRankSum=0.432;QD=8.08;ReadPosRankSum=0.144;SB=-2.828e-02 GT:AD:DP:GQ:PL 1/1:2,58:60:26:518,26,0 chrIX 439783 . G C 361.62 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.961;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=13.2835;MLEAC=1;MLEAF=0.500;MQ=24.16;MQ0=0;MQRankSum=0.858;QD=5.93;ReadPosRankSum=1.103;SB=10.37 GT:AD:DP:GQ:PL 0/1:3,47:61:6:391,0,6 chrIX 439784 . G A 460.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.762;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=18.1298;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=0;MQRankSum=0.587;QD=7.43;ReadPosRankSum=1.762;SB=-3.551e+00 GT:AD:DP:GQ:PL 1/1:4,58:62:2:490,2,0 chrIX 439786 . T C 580 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.894;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=21.0500;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=0;MQRankSum=0.950;QD=9.35;ReadPosRankSum=1.676;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,61:62:72:613,72,0 chrIX 439793 . A G 521 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=30.9369;MLEAC=2;MLEAF=1.00;MQ=24.09;MQ0=0;MQRankSum=-0.367;QD=7.55;ReadPosRankSum=1.680;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:1,65:68:66:554,66,0 chrIX 439794 . A G 575 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=27.2120;MLEAC=2;MLEAF=1.00;MQ=24.01;MQ0=0;QD=8.46;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:72:608,72,0 chrIX 439796 . G T 437.27 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.385;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=23.3003;MLEAC=1;MLEAF=0.500;MQ=24.09;MQ0=0;MQRankSum=0.516;QD=6.34;ReadPosRankSum=2.106;SB=-2.673e-01 GT:AD:DP:GQ:PL 0/1:11,58:69:9:467,0,9 chrM 6553 . A T 101.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:134,15,0 chrM 11791 . G A 13.22 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=6.61;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:3:43,3,0 chrM 13967 . T A 21258.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.570;DP=869;Dels=0.00;FS=0.000;HaplotypeScore=43.0542;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.729;QD=24.46;ReadPosRankSum=4.316;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:8,860:869:99:21258,2370,0 chrM 14550 . G A 783 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:93:816,93,0 chrM 14874 . A G 1310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.509;QD=21.13;ReadPosRankSum=1.621;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1343,156,0 chrM 15272 . T A 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.441;QD=23.25;ReadPosRankSum=1.708;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3325,375,0 chrM 15331 . C T 4882.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.47;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4882,578,0 chrM 15676 . C A 8141.01 PASS AC=2;AF=1.00;AN=2;DP=351;Dels=0.00;FS=0.000;HaplotypeScore=11.3939;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.19;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,351:351:99:8141,903,0 chrM 16218 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.1348;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.52;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3981,456,0 chrM 16463 . G A 1015 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.6779;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=0;QD=15.38;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1048,120,0 chrM 18948 . C A 36.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=0;QD=3.70;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:69,9,0 chrM 18950 . C T 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=0;QD=1.27;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:45,6,0 chrM 19234 . A G 1279 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.63;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1312,153,0 chrM 20212 . T A 93.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=15.54;SB=-4.876e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:126,15,0 chrM 20298 . T G 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357;DP=17;Dels=0.00;FS=2.884;HaplotypeScore=3.3326;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=0.553;QD=0.95;ReadPosRankSum=2.261;SB=-6.512e-03 GT:AD:DP:GQ:PL 0/1:11,6:17:46:46,0,77 chrM 20335 . T A 331 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.05;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=15.76;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:42:364,42,0 chrM 20407 . T C 3946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.906;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=35.1411;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.419;QD=22.17;ReadPosRankSum=4.475;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:7,171:178:99:3946,423,0 chrM 20525 . A G 18072.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=832;Dels=0.00;FS=13.373;HaplotypeScore=81.4310;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.411;QD=21.72;ReadPosRankSum=2.308;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:2,815:832:99:18072,2207,0 chrM 20934 . T G 16148.01 filter AC=2;AF=1.00;AN=2;DP=753;DS;Dels=0.00;FS=0.000;HaplotypeScore=38.3435;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=21.44;SB=-5.624e+03 GT:AD:DP:GQ:PL 1/1:0,742:753:99:16148,1891,0 chrM 20987 . A T 399 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.147;DP=48;Dels=0.00;FS=39.994;HaplotypeScore=4.4263;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;MQRankSum=-2.747;QD=8.31;ReadPosRankSum=4.041;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:9,39:48:48:432,48,0 chrM 20988 . A C 314 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.436;DP=40;Dels=0.00;FS=17.087;HaplotypeScore=5.3306;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;MQRankSum=-2.003;QD=7.85;ReadPosRankSum=2.328;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:3,35:40:42:347,42,0 chrM 20992 . T A 63.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=4.89;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:96,12,0 chrM 21997 . C T 215 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=1.03;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,208:208:30:248,30,0 chrM 22000 . T A 605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.393;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=0;MQRankSum=-1.186;QD=2.60;ReadPosRankSum=3.326;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:4,229:233:75:638,75,0 chrM 22021 . T C 4212.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.714;DP=390;Dels=0.00;FS=9.508;HaplotypeScore=16.1627;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;MQRankSum=-0.648;QD=10.80;ReadPosRankSum=4.774;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:8,382:390:99:4212,489,0 chrM 22129 . C T 6745.01 PASS AC=2;AF=1.00;AN=2;DP=354;Dels=0.00;FS=0.000;HaplotypeScore=22.0831;MLEAC=2;MLEAF=1.00;MQ=35.46;MQ0=0;QD=19.05;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,351:354:99:6745,774,0 chrM 22175 . C A 5444.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=3.5665;MLEAC=2;MLEAF=1.00;MQ=32.39;MQ0=0;QD=20.01;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,272:272:99:5444,659,0 chrM 22176 . T C 5688.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=3.5665;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;QD=20.91;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,268:272:99:5688,668,0 chrM 22195 . T C 6254.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=35.02;MQ0=0;QD=21.20;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,295:295:99:6254,749,0 chrM 22299 . G T 2378 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;QD=16.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2411,276,0 chrM 22327 . T G 572 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.05;MQ0=0;QD=13.95;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:69:605,69,0 chrM 22367 . A T 47.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=7.9319;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=8.00;SB=-5.021e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:80,9,0 chrM 22375 . A T 47.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=11.99;SB=-5.021e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:80,9,0 chrM 22394 . G A 48.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=12.24;SB=-4.921e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:81,9,0 chrM 22496 . C A 78.51 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=19.63;SB=-5.275e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:12:111,12,0 chrM 22592 . C A 50.97 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=10.19;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:83,9,0 chrM 22604 . G A 75.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=12.59;SB=-5.155e+01 GT:AD:DP:GQ:PL 1/1:0,5:6:12:108,12,0 chrM 22732 . A T 156.06 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=19.51;SB=-8.181e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:21:189,21,0 chrM 22740 . C A 190.03 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.11;SB=-8.591e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:24:223,24,0 chrM 22837 . A T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=4.56;SB=-2.780e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:54,6,0 chrM 23621 . C T 599 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.04;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:72:632,72,0 chrM 24467 . T G 412 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.369;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;MQRankSum=1.552;QD=21.68;ReadPosRankSum=1.369;SB=-3.808e-03 GT:AD:DP:GQ:PL 1/1:1,18:19:54:445,54,0 chrM 24671 . T C 188.03 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=13.43;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,13:14:24:221,24,0 chrM 24681 . A T 158.06 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=13.17;SB=-1.319e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:21:191,21,0 chrM 24821 . A G 623 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.96;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:75:656,75,0 chrM 24876 . C T 430 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.63;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:54:463,54,0 chrM 25210 . A G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=3.96;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:55,6,0 chrM 25344 . T A 311 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=23.92;SB=-1.519e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:39:344,39,0 chrM 25496 . A T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.219;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=3.9676;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;MQRankSum=1.652;QD=1.87;ReadPosRankSum=-1.307;SB=-1.576e+01 GT:AD:DP:GQ:PL 1/1:5,4:9:6:48,6,0 chrM 25621 . A C 122.13 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.45;SB=-2.788e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:18:155,18,0 chrM 25673 . G A 173.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.31;SB=-7.994e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:21:206,21,0 chrM 26386 . T C 7464.01 PASS AC=2;AF=1.00;AN=2;DP=360;Dels=0.00;FS=0.000;HaplotypeScore=5.8332;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.73;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,358:360:99:7464,858,0 chrM 29164 . C T 1025 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.79;MQ0=0;QD=18.64;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1058,123,0 chrM 29170 . C T 1040 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;QD=18.57;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1073,120,0 chrM 29179 . G T 1157 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.28;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1190,138,0 chrM 29200 . C T 1397 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1430,159,0 chrM 29203 . T C 1393 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1426,159,0 chrM 29206 . G A 1125 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1158,123,0 chrM 29207 . G T 1114 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1147,123,0 chrM 29208 . G C 1049 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1082,123,0 chrM 29209 . A T 987 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1020,117,0 chrM 29215 . C T 1002 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1035,117,0 chrM 29218 . G A 923 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:956,120,0 chrM 29219 . G C 1055 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1088,123,0 chrM 29220 . C T 1048 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1081,123,0 chrM 29224 . T C 1049 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1082,123,0 chrM 35488 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrM 35516 . T A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.93;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:52,6,0 chrM 35530 . T A 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.92;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:58,6,0 chrM 35535 . T A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.60;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:54,6,0 chrM 36563 . G A 4688.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=4.4498;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.229;QD=19.13;ReadPosRankSum=-0.616;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,242:245:99:4688,528,0 chrM 36588 . A G 7956.01 filter AC=2;AF=1.00;AN=2;DP=408;Dels=0.00;FS=0.000;HaplotypeScore=28.6438;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.50;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,399:408:99:7956,970,0 chrM 36677 . A T 10820.01 filter AC=2;AF=1.00;AN=2;DP=503;Dels=0.00;FS=0.000;HaplotypeScore=4.7250;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.51;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,503:503:99:10820,1286,0 chrM 36689 . G A 10161.01 filter AC=2;AF=1.00;AN=2;DP=499;Dels=0.00;FS=0.000;HaplotypeScore=6.0068;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.36;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,496:499:99:10161,1146,0 chrM 36803 . C T 9332.01 filter AC=2;AF=1.00;AN=2;DP=508;Dels=0.01;FS=0.000;HaplotypeScore=22.6041;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=18.37;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,503:505:99:9332,1082,0 chrM 37367 . A T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=11.39;SB=-2.576e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:54,6,0 chrM 37372 . A T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=11.39;SB=-2.576e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:54,6,0 chrM 37513 . A T 49.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=4.54;SB=-2.985e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:82,9,0 chrM 37516 . A T 46.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=4.70;SB=-2.691e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:79,9,0 chrM 37636 . T A 237 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=21.55;SB=-1.409e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:30:270,30,0 chrM 37706 . G A 261 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=16.31;SB=-1.032e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:33:294,33,0 chrM 37743 . A T 161.06 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=16.11;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:194,21,0 chrM 37753 . C T 160.06 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=1.9832;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.01;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:21:193,21,0 chrM 37760 . A G 159.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.88;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:21:192,21,0 chrM 37764 . A T 99.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.589;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.572;QD=12.41;ReadPosRankSum=-1.589;SB=2.74 GT:AD:DP:GQ:PL 1/1:2,6:8:15:132,15,0 chrM 37769 . A T 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.720;QD=8.50;ReadPosRankSum=-1.380;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:2,4:6:35:81,0,35 chrM 37774 . A T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.736;QD=7.93;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,2:3:6:55,6,0 chrM 37776 . C A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrM 37781 . T A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrM 37782 . T A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrM 38623 . G A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.90;SB=-2.376e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:51,6,0 chrM 39517 . G T 105.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.54;SB=-4.776e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:138,15,0 chrM 40386 . G A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=6.93;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:52,6,0 chrM 40387 . G A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=5.95;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:49,6,0 chrM 40729 . A T 133.13 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=13.31;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:18:166,18,0 chrM 40865 . G A 10064.01 filter AC=2;AF=1.00;AN=2;DP=422;Dels=0.00;FS=0.000;HaplotypeScore=3.6372;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.85;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,418:422:99:10064,1152,0 chrM 40886 . T C 9080.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.440;DP=389;Dels=0.00;FS=0.000;HaplotypeScore=6.8985;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.239;QD=23.34;ReadPosRankSum=3.417;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:4,385:389:99:9080,996,0 chrM 40901 . C T 5912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.992;DP=351;Dels=0.00;FS=0.000;HaplotypeScore=1.8664;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=-0.716;QD=16.84;ReadPosRankSum=-0.163;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:1,350:351:99:5912,668,0 chrM 40907 . T A 6356.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.86;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,320:320:99:6356,761,0 chrM 41214 . C A 73.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=3.9463;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=0;QD=10.50;SB=-5.155e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:106,12,0 chrM 41309 . T A 140.13 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=20.02;SB=-7.563e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:18:173,18,0 chrM 41316 . A G 112.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=18.71;SB=-5.476e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:145,15,0 chrM 41433 . C T 176.03 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=19.56;SB=-7.277e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:24:209,24,0 chrM 41441 . A T 135.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=8;Dels=0.00;FS=9.700;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=1.067;QD=16.89;ReadPosRankSum=1.589;SB=-2.788e+01 GT:AD:DP:GQ:PL 1/1:2,6:8:18:168,18,0 chrM 41630 . A T 1179 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.83;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1212,141,0 chrM 41832 . G T 744 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.11;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:90:777,90,0 chrM 41882 . G A 676 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.53;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:78:709,78,0 chrM 42069 . G A 175.03 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.67;SB=-2.703e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:24:208,24,0 chrM 42200 . T A 43.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.99;SB=-2.421e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:76,9,0 chrM 42278 . A C 48.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.32;SB=-2.721e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:81,9,0 chrM 42426 . G T 152.06 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.72;SB=-2.894e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:21:185,21,0 chrM 42450 . A G 75.51 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.88;SB=-2.755e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:12:108,12,0 chrM 42804 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;QD=9.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:51,6,0 chrM 43513 . T A 5772.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.50;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,312:312:99:5772,680,0 chrM 43686 . T A 283 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.65;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:36:316,36,0 chrM 44456 . T C 404 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=23.76;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:48:437,48,0 chrM 44467 . G A 311 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.44;SB=-1.789e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:39:344,39,0 chrM 44500 . C T 187.01 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.00;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:27:220,27,0 chrM 44508 . C T 178.03 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=16.18;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:24:211,24,0 chrM 44973 . T C 14.18 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.026;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=0;MQRankSum=1.026;QD=3.55;ReadPosRankSum=0.000;SB=-1.801e+01 GT:AD:DP:GQ:PL 1/1:2,2:4:3:44,3,0 chrM 44975 . G A 14.18 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=0;MQRankSum=1.026;QD=3.55;ReadPosRankSum=0.000;SB=-1.501e+01 GT:AD:DP:GQ:PL 1/1:2,2:4:3:44,3,0 chrM 44986 . A T 14.18 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=0;MQRankSum=1.026;QD=3.55;ReadPosRankSum=0.000;SB=-1.901e+01 GT:AD:DP:GQ:PL 1/1:2,2:4:3:44,3,0 chrM 45117 . T A 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=9.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:50,6,0 chrM 45125 . A C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrM 45126 . T A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=8.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:49,6,0 chrM 50921 . T A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrM 51059 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrM 51068 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:51,6,0 chrM 51271 . C T 76.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.43;MQ0=0;QD=19.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:109,12,0 chrM 51307 . C T 71.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=14.30;SB=-2.755e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:104,12,0 chrM 51308 . C T 75.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=15.10;SB=-2.755e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:108,12,0 chrM 51426 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:52,6,0 chrM 51445 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrM 51452 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:49,6,0 chrM 54768 . T A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.39;SB=-2.576e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:54,6,0 chrM 56188 . G T 68.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=11.42;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:101,12,0 chrM 58268 . G T 743 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.54;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:84:776,84,0 chrM 58771 . T A 103.26 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-5.230e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:15:136,15,0 chrM 59511 . T A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.30;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:51,6,0 chrM 59512 . T A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.63;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:53,6,0 chrM 59514 . T A 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.179;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-1.666;QD=2.75;ReadPosRankSum=1.666;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:2,7:9:6:56,6,0 chrM 59794 . A T 7511.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=379;Dels=0.00;FS=7.725;HaplotypeScore=42.5173;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.220;QD=19.82;ReadPosRankSum=1.714;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,378:379:99:7511,852,0 chrM 61866 . G T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=1.20;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:43,6,0 chrM 61881 . G A 1789 filter AC=2;AF=1.00;AN=2;DP=590;Dels=0.00;FS=0.000;HaplotypeScore=3.6164;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=0;QD=3.03;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,589:590:99:1822,219,0 chrM 61903 . C T 4337.01 filter AC=2;AF=1.00;AN=2;DP=563;Dels=0.00;FS=0.000;HaplotypeScore=5.7024;MLEAC=2;MLEAF=1.00;MQ=34.16;MQ0=0;QD=7.70;SB=-4.594e+03 GT:AD:DP:GQ:PL 1/1:0,563:563:99:4337,527,0 chrM 62466 . A T 227 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.15;MQ0=0;QD=22.70;SB=-2.800e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:30:260,30,0 chrM 62552 . T C 92.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.18;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:125,15,0 chrM 62563 . T C 170.03 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.00;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:24:203,24,0 chrM 62589 . A G 78.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.04;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:111,15,0 chrM 63752 . T A 97.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=16.21;SB=-2.776e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:130,15,0 chrM 64578 . T G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.41;SB=-2.176e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:50,6,0 chrM 65168 . T G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrM 65171 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=8.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:49,6,0 chrM 66064 . A T 45.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:78,9,0 chrM 71419 . C A 14.18 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=7.09;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:3:44,3,0 chrM 73448 . T C 242 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.44;MQ0=0;QD=24.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:30:275,30,0 chrM 73462 . C T 167.03 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.80;MQ0=0;QD=18.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:24:200,24,0 chrM 73478 . G A 101.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=7;Dels=0.00;FS=13.222;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.67;MQ0=0;MQRankSum=0.922;QD=14.47;ReadPosRankSum=-1.495;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,5:7:15:134,15,0 chrM 74415 . G C 11830.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=645;Dels=0.00;FS=0.000;HaplotypeScore=4.5893;MLEAC=2;MLEAF=1.00;MQ=29.58;MQ0=0;QD=18.34;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,643:645:99:11830,1458,0 chrM 74416 . C A 11623.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=644;Dels=0.00;FS=0.000;HaplotypeScore=3.8006;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;QD=18.05;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,644:644:99:11623,1323,0 chrM 74423 . T A 13467.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=757;Dels=0.00;FS=0.000;HaplotypeScore=602.0253;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.79;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,756:757:99:13467,1612,0 chrM 74426 . G A 14871.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=758;Dels=0.00;FS=0.000;HaplotypeScore=601.0519;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.62;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,758:758:99:14871,1615,0 chrM 74429 . G A 14703.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=782;Dels=0.00;FS=0.000;HaplotypeScore=601.0519;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,782:782:99:14703,1603,0 chrM 74441 . T A 10997.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=792;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,792:792:99:10997,1419,0 chrM 74447 . A T 12184.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.857;DP=797;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.484;QD=15.29;ReadPosRankSum=3.857;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,792:797:99:12184,1362,0 chrM 74450 . T C 10705.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=778;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,778:778:99:10705,1306,0 chrM 74462 . G A 9879.01 filter AC=2;AF=1.00;AN=2;DP=700;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,700:700:99:9879,1116,0 chrM 74465 . C T 8778.01 filter AC=2;AF=1.00;AN=2;DP=685;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,685:685:99:8778,1075,0 chrM 74521 . T A 773 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:90:806,90,0 chrM 74522 . T A 760 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:90:793,90,0 chrM 74524 . C T 790 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:93:823,93,0 chrM 74527 . A G 813 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.666;QD=15.63;ReadPosRankSum=1.666;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,51:52:93:846,93,0 chrM 74537 . T C 414 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.990;QD=14.79;ReadPosRankSum=-1.486;SB=-6.451e-03 GT:AD:DP:GQ:PL 1/1:1,27:28:51:447,51,0 chrM 74545 . T A 248 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.347;QD=12.40;ReadPosRankSum=-1.387;SB=5.044e-03 GT:AD:DP:GQ:PL 1/1:1,19:20:36:281,36,0 chrM 74550 . A T 104.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.075;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.671;QD=6.13;ReadPosRankSum=0.224;SB=-3.405e-02 GT:AD:DP:GQ:PL 1/1:2,15:17:18:137,18,0 chrM 74551 . A T 77.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.868;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.735;QD=4.83;ReadPosRankSum=-1.302;SB=0.060 GT:AD:DP:GQ:PL 1/1:1,15:16:15:110,15,0 chrM 75921 . A G 69.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=13.90;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:102,12,0 chrM 75940 . G A 130.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=18.59;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,7:7:18:163,18,0 chrM 75962 . T A 73.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=14.70;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:106,12,0 chrM 75997 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=7.26;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:53,6,0 chrM 76000 . C A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=8.59;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:57,6,0 chrM 79281 . T A 14282.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=621;Dels=0.00;FS=0.000;HaplotypeScore=28.4305;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.053;QD=23.00;ReadPosRankSum=2.973;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:3,618:621:99:14282,1734,0 chrM 79590 . C T 20085.01 filter AC=2;AF=1.00;AN=2;DP=951;DS;Dels=0.00;FS=0.000;HaplotypeScore=64.5482;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.12;SB=-1.055e+04 GT:AD:DP:GQ:PL 1/1:0,950:951:99:20085,2432,0 chrM 79752 . T C 20856.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.148;DP=971;DS;Dels=0.00;FS=14.086;HaplotypeScore=48.3640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.489;QD=21.48;ReadPosRankSum=4.192;SB=-1.058e+04 GT:AD:DP:GQ:PL 1/1:6,964:971:99:20856,2361,0 chrM 80030 . G T 4622.01 filter AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=46.3427;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=15.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,284:297:99:4622,522,0 chrV 414 . G A 140.03 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.50;MQ0=3;QD=12.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,9:11:24:173,24,0 chrV 417 . T C 140.03 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.88;MQ0=4;QD=11.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,9:12:24:173,24,0 chrV 441 . C T 140.03 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.33;MQ0=10;QD=7.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,16:18:24:173,24,0 chrV 450 . C T 140.03 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.33;MQ0=10;QD=7.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,16:18:24:173,24,0 chrV 468 . A G 140.03 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.33;MQ0=10;QD=7.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,16:18:24:173,24,0 chrV 575 . T G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.45;MQ0=1;QD=6.60;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:51,6,0 chrV 612 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.81;MQ0=10;QD=0.80;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:10,5:15:6:43,6,0 chrV 623 . A G 54.51 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.30;MQ0=31;QD=1.43;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:29,7:38:12:87,12,0 chrV 628 . C T 54.51 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.20;MQ0=32;QD=1.40;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:32,7:39:12:87,12,0 chrV 641 . T C 54.51 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.56;MQ0=40;QD=1.16;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:40,7:47:12:87,12,0 chrV 657 . G A 75.26 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.37;MQ0=49;QD=1.32;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:49,8:57:15:108,15,0 chrV 684 . C T 54.51 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.01;MQ0=63;QD=0.79;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:62,7:69:12:87,12,0 chrV 729 . T C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.26;MQ0=31;QD=0.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:29,4:33:6:51,6,0 chrV 732 . C T 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.11;MQ0=33;QD=0.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:28,7:35:6:48,6,0 chrV 737 . A C 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.11;MQ0=33;QD=0.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:24,11:35:6:50,6,0 chrV 1491 . A G 328 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.84;MQ0=12;QD=9.37;SB=-9.000e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:42:361,42,0 chrV 1544 . T C 317 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.17;MQ0=4;QD=11.74;SB=-8.200e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:42:350,42,0 chrV 1554 . G A 245 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.29;MQ0=4;QD=14.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,16:17:33:278,33,0 chrV 1563 . A C 231 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.90;MQ0=2;QD=16.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,12:14:33:264,33,0 chrV 1798 . A G 40.97 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.99;MQ0=3;QD=2.73;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:73,9,0 chrV 1815 . C A 62.51 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.46;MQ0=3;QD=3.68;SB=-3.045e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:95,12,0 chrV 1851 . A C 117.52 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.02;MQ0=19;MQRankSum=-0.189;QD=3.01;ReadPosRankSum=1.827;SB=-8.576e+01 GT:AD:DP:GQ:PL 0/1:4,34:39:6:147,0,6 chrV 1923 . A C 591 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.404;DP=70;Dels=0.00;FS=2.834;HaplotypeScore=15.2911;MLEAC=2;MLEAF=1.00;MQ=31.10;MQ0=17;MQRankSum=1.966;QD=8.44;ReadPosRankSum=0.458;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:19,44:70:68:624,68,0 chrV 2029 . A G 975 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=21.45;MQ0=80;QD=7.99;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1008,111,0 chrV 2146 . T C 881 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.559;DP=73;Dels=0.00;FS=98.688;HaplotypeScore=1.5810;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=5;MQRankSum=4.559;QD=12.07;ReadPosRankSum=4.521;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,64:73:96:914,96,0 chrV 6259 . A C 72.51 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.20;MQ0=12;QD=3.02;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,21:24:12:105,12,0 chrV 6271 . T C 308 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=12;QD=9.06;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:36:341,36,0 chrV 6303 . G A 717 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.93;MQ0=0;QD=16.67;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:75:750,75,0 chrV 6304 . C T 704 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.93;MQ0=0;QD=16.37;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:75:737,75,0 chrV 6382 . A G 341.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.028;DP=177;Dels=0.00;FS=95.690;HaplotypeScore=3.3787;MLEAC=1;MLEAF=0.500;MQ=30.24;MQ0=0;MQRankSum=0.560;QD=1.93;ReadPosRankSum=10.806;SB=-7.970e+02 GT:AD:DP:GQ:PL 0/1:86,89:177:99:371,0,261 chrV 6407 . A G 1570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.365;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.7224;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;MQRankSum=-0.866;QD=11.80;ReadPosRankSum=0.840;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:1603,171,0 chrV 6558 . T C 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.956;DP=155;Dels=0.00;FS=26.317;HaplotypeScore=15.8243;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=3.875;QD=21.82;ReadPosRankSum=0.129;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:14,140:155:99:3382,306,0 chrV 6611 . G C 4592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.898;DP=187;Dels=0.00;FS=2.580;HaplotypeScore=11.5653;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=2.016;QD=24.56;ReadPosRankSum=2.371;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:4592,461,0 chrV 6921 . G A 4436.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.75;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4436,451,0 chrV 7063 . A G 3280.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.16;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3280,342,0 chrV 7069 . T A 3387.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.99;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3387,354,0 chrV 7235 . C A 4454.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.75;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4454,442,0 chrV 7546 . T C 5437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=224;Dels=0.00;FS=4.869;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.820;QD=24.27;ReadPosRankSum=1.686;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:5437,565,0 chrV 7581 . T C 4356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=4.605;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.655;QD=24.20;ReadPosRankSum=1.616;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4356,451,0 chrV 7660 . C T 3522.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.12;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3522,364,0 chrV 7846 . A C 1827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.112;QD=23.73;ReadPosRankSum=1.642;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1860,192,0 chrV 7941 . A G 2304 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2337,246,0 chrV 8022 . A T 1326 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1359,138,0 chrV 8218 . A G 1866 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.23;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1899,201,0 chrV 8258 . T C 1976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.332;QD=25.33;ReadPosRankSum=1.688;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,77:78:99:2009,207,0 chrV 8344 . G A 1940 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.56;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1973,204,0 chrV 8932 . T C 2012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=1.374;QD=23.13;ReadPosRankSum=1.692;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2045,213,0 chrV 8946 . C T 1908 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.27;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1941,198,0 chrV 9542 . T C 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=4.106;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.269;QD=23.94;ReadPosRankSum=1.600;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3807,400,0 chrV 9588 . T G 4238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=179;Dels=0.00;FS=3.021;HaplotypeScore=20.8301;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.593;QD=23.68;ReadPosRankSum=2.422;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:2,174:179:99:4238,445,0 chrV 9859 . G A 5509.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.9036;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.04;SB=-2.923e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5509,553,0 chrV 9894 . A G 5798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.269;DP=236;Dels=0.00;FS=8.916;HaplotypeScore=22.1068;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.351;QD=24.57;ReadPosRankSum=3.387;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:4,232:236:99:5798,604,0 chrV 10202 . A T 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.146;QD=23.08;ReadPosRankSum=1.705;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3056,324,0 chrV 10621 . T C 4791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=188;Dels=0.00;FS=2.567;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.460;QD=25.48;ReadPosRankSum=2.909;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:4791,493,0 chrV 10653 . T A 4744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.461;QD=26.50;ReadPosRankSum=1.693;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4744,472,0 chrV 10700 . T A 3644.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.06;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3644,384,0 chrV 10731 . C T 4210.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=24.62;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4210,427,0 chrV 10779 . T C 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=4.903;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.612;QD=20.90;ReadPosRankSum=1.691;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3511,375,0 chrV 10798 . C T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.4495;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.62;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3589,375,0 chrV 10946 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.43;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3258,342,0 chrV 11033 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=3.854;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-1.630;QD=24.07;ReadPosRankSum=1.707;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3297,342,0 chrV 11049 . T C 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.585;QD=23.36;ReadPosRankSum=1.708;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3411,360,0 chrV 11100 . A G 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=155;Dels=0.00;FS=5.815;HaplotypeScore=14.3383;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=2.665;QD=22.36;ReadPosRankSum=2.941;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:3,150:155:99:3466,358,0 chrV 11186 . T C 4177.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=24.14;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4177,436,0 chrV 11195 . T G 4228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=178;Dels=0.00;FS=2.575;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=1.165;QD=23.75;ReadPosRankSum=2.938;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:3,174:178:99:4228,439,0 chrV 11244 . A G 3867.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.97;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3867,411,0 chrV 11351 . T C 3926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=164;Dels=0.00;FS=3.644;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.920;QD=23.94;ReadPosRankSum=1.711;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3926,409,0 chrV 11370 . C A 4055.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=24.73;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4055,415,0 chrV 11439 . C G 4480.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.9700;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.58;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4480,469,0 chrV 11496 . C T 5225.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.9012;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=24.42;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:5225,544,0 chrV 11575 . A G 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=143;Dels=0.00;FS=3.889;HaplotypeScore=12.2233;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-1.098;QD=23.36;ReadPosRankSum=1.708;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3341,345,0 chrV 11741 . G A 3989.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=23.74;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3989,406,0 chrV 11756 . C T 3528.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=22.47;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3528,369,0 chrV 11785 . G T 3160 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=21.07;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3193,333,0 chrV 11798 . C T 2600 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=20.00;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2633,267,0 chrV 11817 . C T 1981 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=18.17;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2014,216,0 chrV 11847 . T G 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=3.405;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-0.678;QD=19.04;ReadPosRankSum=1.657;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1804,192,0 chrV 12024 . G A 1844 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=17.56;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1877,201,0 chrV 12028 . A C 1812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.584;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;MQRankSum=0.016;QD=17.09;ReadPosRankSum=1.699;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:1845,204,0 chrV 12036 . C A 2163 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=18.49;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2196,225,0 chrV 12071 . A C 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=4.512;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=-0.133;QD=20.32;ReadPosRankSum=1.705;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2674,282,0 chrV 12186 . G A 3054 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=26.79;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3087,310,0 chrV 12215 . T C 3220.05 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=24.58;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3253,336,0 chrV 12258 . A C 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=141;Dels=0.00;FS=5.370;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.584;QD=22.54;ReadPosRankSum=2.949;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:3,135:141:99:3211,333,0 chrV 12309 . T C 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=136;Dels=0.00;FS=4.491;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=0.988;QD=22.82;ReadPosRankSum=1.706;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3136,322,0 chrV 12413 . A T 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=0.488;QD=24.23;ReadPosRankSum=1.635;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3440,354,0 chrV 12511 . T A 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.642;DP=132;Dels=0.00;FS=2.591;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=0.504;QD=22.30;ReadPosRankSum=2.916;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2977,312,0 chrV 12532 . C T 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=4.576;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=0.296;QD=24.72;ReadPosRankSum=-1.253;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3758,379,0 chrV 12571 . C T 2993 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=17.01;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3026,301,0 chrV 12600 . C T 2499 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.21;MQ0=0;QD=14.04;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:2532,264,0 chrV 12612 . C T 2045 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=137.1976;MLEAC=2;MLEAF=1.00;MQ=35.16;MQ0=0;QD=12.25;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:2078,210,0 chrV 12625 . G A 1784 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.44;MQ0=0;QD=11.74;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:1817,183,0 chrV 12629 . G A 1768 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.89;MQ0=0;QD=11.95;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1801,183,0 chrV 12869 . C T 4943.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=24.96;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4943,505,0 chrV 12937 . C T 4207.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=25.50;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4207,427,0 chrV 13004 . A C 3178 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=132.8098;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=19.62;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3211,336,0 chrV 13167 . T G 5042.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.24;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:5042,526,0 chrV 13307 . A G 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=169;Dels=0.00;FS=3.091;HaplotypeScore=11.9791;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=1.052;QD=22.80;ReadPosRankSum=1.626;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:1,162:169:99:3853,394,0 chrV 13446 . T A 3535.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=5.518;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;MQRankSum=-0.395;QD=20.67;ReadPosRankSum=1.692;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3535,364,0 chrV 13447 . C T 3395.01 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=19.97;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3395,357,0 chrV 13454 . C T 3592.01 SnpCluster AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=19.96;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3592,361,0 chrV 13502 . T C 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=178;Dels=0.02;FS=3.516;HaplotypeScore=164.9172;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;MQRankSum=0.190;QD=16.99;ReadPosRankSum=1.692;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3058,318,0 chrV 13639 . C T 3382.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7547;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=23.65;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3382,346,0 chrV 14025 . A G 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.680;DP=170;Dels=0.00;FS=19.014;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-0.406;QD=21.28;ReadPosRankSum=3.754;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:5,165:170:99:3617,378,0 chrV 14028 . G C 3510.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.17;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3510,372,0 chrV 14061 . A G 3980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=3.968;HaplotypeScore=9.0664;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=1.010;QD=20.62;ReadPosRankSum=1.696;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:3980,418,0 chrV 14175 . A T 3991.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.48;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3991,400,0 chrV 14408 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=24.62;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2667,273,0 chrV 14476 . G A 1863 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=20.93;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1896,195,0 chrV 14482 . A G 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.352;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;MQRankSum=0.253;QD=20.78;ReadPosRankSum=1.690;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1737,183,0 chrV 14512 . C G 1414 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=22.81;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,59:62:99:1447,150,0 chrV 14579 . T A 1412 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=23.53;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1445,144,0 chrV 14592 . A G 1180 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=23.14;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1213,126,0 chrV 14610 . A G 1063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=0.157;QD=24.16;ReadPosRankSum=1.654;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:1096,111,0 chrV 14660 . T A 161.06 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;QD=20.13;SB=-6.094e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:21:194,21,0 chrV 14676 . A G 105.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=17.54;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:138,15,0 chrV 15032 . T C 510 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.94;MQ0=0;QD=7.61;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:54:543,54,0 chrV 15052 . G A 949 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;QD=14.38;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:982,102,0 chrV 15174 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=0.27;SB=-6.708e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:6:55,6,0 chrV 15229 . A G 2306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=3.364;HaplotypeScore=8.1694;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;MQRankSum=1.039;QD=19.88;ReadPosRankSum=1.702;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2339,240,0 chrV 15399 . T C 5683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=223;Dels=0.00;FS=2.514;HaplotypeScore=12.8603;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.860;QD=25.48;ReadPosRankSum=2.915;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:3,220:223:99:5683,589,0 chrV 15479 . T C 4482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=199;Dels=0.00;FS=2.931;HaplotypeScore=15.2873;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.134;QD=22.52;ReadPosRankSum=2.337;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:2,194:199:99:4482,472,0 chrV 15608 . C T 6081.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.12;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:6081,613,0 chrV 15698 . T A 4655.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.3235;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.87;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4655,472,0 chrV 15826 . T C 4124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.9101;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.575;QD=23.43;ReadPosRankSum=1.712;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4124,447,0 chrV 15966 . G A 4455.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.48;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4455,442,0 chrV 17311 . C T 3862.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=24.92;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3862,388,0 chrV 17320 . G A 4081.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=24.01;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4081,412,0 chrV 17400 . T A 4718.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.9337;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.95;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4718,499,0 chrV 17824 . A G 2054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.479;QD=21.85;ReadPosRankSum=1.695;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2087,222,0 chrV 17871 . G A 1393 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.02;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1426,141,0 chrV 17918 . T A 138.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=12.56;SB=-8.117e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:171,18,0 chrV 18031 . G A 1892 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=23.07;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1925,189,0 chrV 18035 . C T 1711 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;QD=20.13;SB=-6.601e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1744,180,0 chrV 18138 . G A 1540 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=19.49;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1573,165,0 chrV 18162 . T A 1607 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;QD=17.28;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1640,165,0 chrV 18174 . A T 1343 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;QD=13.57;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1376,144,0 chrV 18178 . A C 1468 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.96;MQ0=0;QD=14.12;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1501,156,0 chrV 18182 . T C 1265 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.012;DP=106;Dels=0.00;FS=2.711;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;MQRankSum=-2.287;QD=11.93;ReadPosRankSum=2.078;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1298,114,0 chrV 18193 . T A 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=120;Dels=0.00;FS=2.987;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=33.35;MQ0=0;MQRankSum=-2.327;QD=13.43;ReadPosRankSum=2.409;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:1645,174,0 chrV 18224 . C T 1832 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=37.98;MQ0=0;QD=15.02;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1865,195,0 chrV 18229 . C T 1784 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=39.24;MQ0=0;QD=14.39;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1817,189,0 chrV 18232 . G A 1860 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;QD=14.53;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1893,201,0 chrV 18285 . A T 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.760;DP=155;Dels=0.00;FS=6.061;HaplotypeScore=11.3313;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=-0.396;QD=21.53;ReadPosRankSum=2.747;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3337,348,0 chrV 18487 . T C 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.685;QD=23.20;ReadPosRankSum=1.694;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4246,442,0 chrV 18609 . T C 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=173;Dels=0.00;FS=16.554;HaplotypeScore=16.5840;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.842;QD=24.47;ReadPosRankSum=2.959;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:4234,439,0 chrV 18636 . C A 4582.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.4136;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=24.37;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4582,463,0 chrV 18949 . T C 976 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;QD=16.00;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1009,105,0 chrV 18960 . T C 504 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.40;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:60:537,60,0 chrV 18961 . T G 471 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.46;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:60:504,60,0 chrV 18962 . T C 467 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.34;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:60:500,60,0 chrV 18963 . G A 466 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.31;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:60:499,60,0 chrV 18965 . G T 569 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=0;QD=15.81;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:63:602,63,0 chrV 18979 . G A 441 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=0;QD=7.23;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:48:474,48,0 chrV 18986 . A C 330 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=0;QD=6.00;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:39:363,39,0 chrV 18988 . C T 454 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.70;MQ0=0;QD=7.32;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:48:487,48,0 chrV 18994 . G A 618 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=40.18;MQ0=0;QD=8.24;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:66:651,66,0 chrV 19144 . T C 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.931;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.4956;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-1.342;QD=21.74;ReadPosRankSum=1.710;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3478,345,0 chrV 19236 . C A 4126.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=23.99;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4126,432,0 chrV 19307 . G A 3026 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.61;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3059,315,0 chrV 19431 . C T 1529 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=60.6660;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=21.54;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1562,156,0 chrV 19504 . T C 465 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.109;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.27;MQ0=0;MQRankSum=-1.506;QD=15.50;ReadPosRankSum=2.281;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:2,27:30:60:498,60,0 chrV 19513 . C T 390 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.08;MQ0=0;QD=18.57;SB=-7.050e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:42:423,42,0 chrV 19517 . A T 292 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.67;MQ0=0;QD=15.37;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:36:325,36,0 chrV 19586 . A T 94.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.283;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=39.0522;MLEAC=1;MLEAF=0.500;MQ=38.23;MQ0=3;MQRankSum=-2.700;QD=1.62;ReadPosRankSum=-3.028;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,26:58:99:124,0,140 chrV 19654 . A C 778 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.20;MQ0=37;QD=10.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:73:84:811,84,0 chrV 19675 . C T 524 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.37;MQ0=68;QD=5.82;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,90:90:57:557,57,0 chrV 20091 . A C 375 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=19.09;MQ0=23;MQRankSum=0.068;QD=5.51;ReadPosRankSum=2.844;SB=-6.725e-03 GT:AD:DP:GQ:PL 1/1:12,56:68:45:408,45,0 chrV 20261 . G A 180.03 filter AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.99;MQ0=275;QD=0.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:134,148:286:24:213,24,0 chrV 20557 . C T 1404.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.704;DP=284;Dels=0.00;FS=108.731;HaplotypeScore=8.5661;MLEAC=1;MLEAF=0.500;MQ=15.39;MQ0=91;MQRankSum=0.250;QD=4.94;ReadPosRankSum=-2.250;SB=-5.620e+02 GT:AD:DP:GQ:PL 0/1:86,194:284:74:1434,0,74 chrV 20575 . G A 1232.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;DP=263;Dels=0.00;FS=158.515;HaplotypeScore=2.3913;MLEAC=1;MLEAF=0.500;MQ=15.46;MQ0=86;MQRankSum=0.446;QD=4.68;ReadPosRankSum=-1.583;SB=-3.890e+02 GT:AD:DP:GQ:PL 0/1:93,169:263:99:1262,0,119 chrV 21110 . A T 171.06 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.98;MQ0=12;QD=8.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:21:204,21,0 chrV 21226 . T G 163.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.588;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=14.33;MQ0=25;MQRankSum=2.540;QD=3.98;ReadPosRankSum=-0.318;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:8,33:41:21:196,21,0 chrV 21381 . A G 1395 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=39.88;MQ0=9;QD=15.00;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1428,147,0 chrV 21406 . C T 1694 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.953;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=21;MQRankSum=7.246;QD=15.26;ReadPosRankSum=-1.382;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:27,84:111:99:1727,177,0 chrV 21440 . T G 1234 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=27;QD=13.56;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1267,129,0 chrV 21521 . C A 1466 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=7;QD=24.03;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1499,150,0 chrV 21547 . T C 1281 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=7;MQRankSum=1.039;QD=19.12;ReadPosRankSum=1.501;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1314,141,0 chrV 21548 . T C 1095 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.629;DP=71;Dels=0.00;FS=19.839;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.65;MQ0=9;MQRankSum=1.241;QD=15.42;ReadPosRankSum=2.275;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:7,64:71:48:1128,48,0 chrV 21741 . A T 1569 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=10;MQRankSum=-1.169;QD=17.43;ReadPosRankSum=1.689;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1602,171,0 chrV 21762 . C A 1410 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=12;QD=16.79;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1443,153,0 chrV 21768 . A G 1381 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.17;MQ0=13;MQRankSum=0.078;QD=17.26;ReadPosRankSum=1.629;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1414,150,0 chrV 21771 . A G 1349 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.61;MQ0=14;QD=16.86;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1382,147,0 chrV 21951 . A G 1067 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=32.85;MQ0=8;MQRankSum=-0.504;QD=13.51;ReadPosRankSum=0.817;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1100,120,0 chrV 21954 . A T 980 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=73;Dels=0.00;FS=6.506;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.02;MQ0=8;MQRankSum=-1.766;QD=13.42;ReadPosRankSum=2.336;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1013,108,0 chrV 21990 . A G 260 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.85;MQ0=3;MQRankSum=1.609;QD=8.39;ReadPosRankSum=1.609;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:33:293,33,0 chrV 21993 . A T 266 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.70;MQ0=3;QD=9.17;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:33:299,33,0 chrV 21999 . G A 450 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.45;MQ0=3;QD=12.50;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:54:483,54,0 chrV 22026 . C T 1080 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=39.95;MQ0=3;QD=15.00;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1113,126,0 chrV 22188 . A C 378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=51;Dels=0.00;FS=21.588;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=22.95;MQ0=3;MQRankSum=-2.726;QD=7.41;ReadPosRankSum=2.854;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:3,48:51:45:411,45,0 chrV 22191 . G A 319 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.87;MQ0=4;QD=7.09;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,44:45:39:352,39,0 chrV 22200 . A G 211.01 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.47;MQ0=4;QD=5.02;SB=-3.002e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:27:244,27,0 chrV 22302 . T G 181.03 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=15.93;MQ0=31;QD=3.85;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,46:47:24:214,24,0 chrV 22305 . A G 156.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.041;DP=44;Dels=0.00;FS=10.414;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.38;MQ0=31;MQRankSum=-2.256;QD=3.55;ReadPosRankSum=2.041;SB=-2.204e+01 GT:AD:DP:GQ:PL 1/1:2,41:44:21:189,21,0 chrV 22341 . C T 679 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.54;MQ0=26;QD=9.30;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:72:712,72,0 chrV 22464 . C A 287 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.23;MQ0=11;QD=10.25;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:36:320,36,0 chrV 22506 . G A 573 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.04;MQ0=29;QD=10.42;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:63:606,63,0 chrV 22542 . G C 550 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=26.12;MQ0=36;QD=8.59;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:60:583,60,0 chrV 22614 . C G 81.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=3;QD=11.64;SB=-2.955e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:114,12,0 chrV 22812 . C T 172.06 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.70;MQ0=54;QD=2.73;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:21:205,21,0 chrV 22863 . G A 417 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.14;MQ0=40;QD=7.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:45:450,45,0 chrV 22917 . G A 1292 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=17;QD=17.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,70:75:99:1325,138,0 chrV 23192 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=14.2974;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=20.32;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2715,279,0 chrV 23309 . A G 3838.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.6742;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.45;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3838,394,0 chrV 23494 . C T 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-1.334;QD=24.07;ReadPosRankSum=1.214;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4189,401,0 chrV 23825 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.94;MQ0=0;QD=13.04;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:2850,300,0 chrV 23976 . A G 4337.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=24.64;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4337,448,0 chrV 24002 . G T 4459.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;QD=23.35;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4459,454,0 chrV 24025 . G C 4669.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=22.67;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4669,484,0 chrV 24122 . C T 3225.28 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=26.01;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3258,331,0 chrV 24163 . C T 2822 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=24.33;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2855,291,0 chrV 24165 . C G 2707 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=23.54;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2740,282,0 chrV 24232 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=23.43;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3172,322,0 chrV 24259 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=24.32;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3380,340,0 chrV 24354 . A G 1736 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3503;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=20.67;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1769,189,0 chrV 24380 . A G 1870 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=19.89;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1903,204,0 chrV 24388 . A G 1733 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=19.69;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1766,192,0 chrV 24392 . A T 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;MQRankSum=-1.054;QD=18.77;ReadPosRankSum=1.694;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1760,192,0 chrV 24419 . G A 1880 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=20.00;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1913,198,0 chrV 24446 . T C 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=8.798;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=1.060;QD=23.05;ReadPosRankSum=2.377;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2361,243,0 chrV 24575 . T C 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;MQRankSum=-0.509;QD=23.27;ReadPosRankSum=1.630;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2453,261,0 chrV 24581 . C A 2163 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=21.42;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2196,234,0 chrV 24596 . A G 2032 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=20.95;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2065,219,0 chrV 24650 . T G 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;MQRankSum=0.217;QD=19.69;ReadPosRankSum=1.678;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2573,264,0 chrV 24661 . C T 2608 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=18.90;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2641,273,0 chrV 24670 . C T 2875 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=20.54;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2908,300,0 chrV 24749 . G A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.63;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3252,336,0 chrV 24754 . A G 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=3.842;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-1.464;QD=22.03;ReadPosRankSum=1.687;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3458,360,0 chrV 24870 . G A 4905.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=26.37;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4905,499,0 chrV 24902 . G A 5226.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.1506;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=25.25;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5226,526,0 chrV 24966 . G A 5442.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=27.48;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5442,544,0 chrV 25051 . C T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=20.54;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3553,378,0 chrV 25095 . G A 3118 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=19.37;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3151,327,0 chrV 25103 . A T 3283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;MQRankSum=-1.406;QD=19.31;ReadPosRankSum=1.691;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3283,334,0 chrV 25106 . A G 3046 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=17.92;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3079,324,0 chrV 25120 . T A 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.289;DP=174;Dels=0.00;FS=5.174;HaplotypeScore=5.8303;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;MQRankSum=-0.959;QD=17.49;ReadPosRankSum=3.409;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:4,170:174:99:3076,321,0 chrV 25188 . G T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.72;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3866,403,0 chrV 25194 . A G 3775.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.88;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3775,391,0 chrV 25237 . C T 2558 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.3838;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.44;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2591,261,0 chrV 25332 . C T 2039 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=22.16;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2072,216,0 chrV 25369 . C T 1833 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=22.91;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1866,186,0 chrV 25407 . G A 88.51 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=44.4083;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=1.61;SB=-2.615e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:12:121,12,0 chrV 25571 . A T 3048 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8264;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.83;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3081,318,0 chrV 25617 . T C 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.539;QD=25.37;ReadPosRankSum=3.395;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:4,134:138:99:3501,372,0 chrV 25685 . G A 3921.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.91;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3921,414,0 chrV 25874 . A C 5650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=231;Dels=0.00;FS=3.003;HaplotypeScore=14.6021;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-2.375;QD=24.46;ReadPosRankSum=2.418;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:2,228:231:99:5650,583,0 chrV 25914 . G A 4821.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.4777;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.75;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4821,502,0 chrV 26058 . T G 5423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=221;Dels=0.00;FS=3.381;HaplotypeScore=14.4843;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-1.543;QD=24.54;ReadPosRankSum=1.716;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:5423,556,0 chrV 26265 . A C 7370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=297;Dels=0.00;FS=5.459;HaplotypeScore=20.2552;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.344;QD=24.81;ReadPosRankSum=2.915;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:3,292:297:99:7370,746,0 chrV 26313 . G T 5763.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.17;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:5763,601,0 chrV 26322 . C G 5565.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.08;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:5565,589,0 chrV 26413 . A G 7684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.415;DP=334;Dels=0.00;FS=8.482;HaplotypeScore=7.7583;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=0.473;QD=23.01;ReadPosRankSum=3.383;SB=-4.168e+03 GT:AD:DP:GQ:PL 1/1:4,329:334:99:7684,784,0 chrV 26417 . A G 7416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.722;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=8.6706;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-1.209;QD=21.75;ReadPosRankSum=1.650;SB=-3.821e+03 GT:AD:DP:GQ:PL 1/1:1,337:341:99:7416,781,0 chrV 26594 . G A 6587.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=14.8988;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.67;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:6587,664,0 chrV 26678 . C T 4248.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=22.24;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4248,430,0 chrV 26685 . C T 4374.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.6406;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=21.65;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4374,442,0 chrV 27044 . C T 5690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=17.0905;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=1.059;QD=22.76;ReadPosRankSum=0.596;SB=-3.140e+03 GT:AD:DP:GQ:PL 1/1:1,246:250:99:5690,595,0 chrV 27119 . A G 5638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=256;Dels=0.00;FS=3.002;HaplotypeScore=13.9199;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.954;QD=22.02;ReadPosRankSum=2.181;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:2,254:256:99:5638,589,0 chrV 27260 . G A 4956.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=24.06;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4956,499,0 chrV 27272 . A G 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=186;Dels=0.00;FS=2.997;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-0.870;QD=21.25;ReadPosRankSum=2.383;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:3953,409,0 chrV 27604 . C T 5561.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=18.3476;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.87;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5561,565,0 chrV 27636 . C A 5002.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.40;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5002,508,0 chrV 27912 . T C 5864.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=12.0724;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.80;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:0,266:269:99:5864,610,0 chrV 27980 . A T 5116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=254;Dels=0.00;FS=2.573;HaplotypeScore=21.0906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.553;QD=20.14;ReadPosRankSum=2.893;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:3,251:254:99:5116,526,0 chrV 28167 . T C 4597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=186;Dels=0.00;FS=3.201;HaplotypeScore=13.7013;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.024;QD=24.72;ReadPosRankSum=1.676;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4597,466,0 chrV 28312 . A G 4837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=3.499;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.387;QD=25.46;ReadPosRankSum=1.714;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4837,490,0 chrV 28427 . T C 5539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=227;Dels=0.00;FS=9.684;HaplotypeScore=19.4232;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-1.653;QD=24.40;ReadPosRankSum=2.907;SB=-2.925e+03 GT:AD:DP:GQ:PL 1/1:3,223:227:99:5539,577,0 chrV 28622 . C T 4465.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.0710;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.44;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4465,472,0 chrV 28649 . G A 4558.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.79;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4558,475,0 chrV 28694 . T G 4720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=203;Dels=0.00;FS=3.188;HaplotypeScore=6.5028;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.507;QD=23.25;ReadPosRankSum=1.715;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:1,199:203:99:4720,493,0 chrV 28988 . C T 5153.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.38;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5153,517,0 chrV 29072 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.75;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4038,406,0 chrV 29269 . C G 3766.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.39;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3766,388,0 chrV 29294 . A G 3220.05 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.61;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3253,334,0 chrV 29420 . T A 4058.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.15;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4058,418,0 chrV 29909 . C T 3148 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.85;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3181,324,0 chrV 29962 . C T 4760.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.44;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4760,493,0 chrV 30054 . T C 3887.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.9671;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.99;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3887,403,0 chrV 30664 . G A 5177.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.1758;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.77;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5177,547,0 chrV 31093 . A C 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=3.768;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.293;QD=23.12;ReadPosRankSum=1.686;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3491,363,0 chrV 31263 . G A 2051 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.59;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2084,210,0 chrV 31273 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.03;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2010,204,0 chrV 31663 . A G 2717 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.17;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2750,276,0 chrV 31867 . T C 5353.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.4541;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.37;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5353,556,0 chrV 33002 . A C 4004.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.62;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4004,420,0 chrV 33344 . C T 2964 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6318;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.12;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2997,315,0 chrV 33551 . A G 2263 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.7638;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.41;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2296,240,0 chrV 33782 . C A 2012 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.54;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:2045,204,0 chrV 34040 . A G 1834 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.58;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1867,195,0 chrV 34050 . G A 1696 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.43;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1729,174,0 chrV 34052 . T A 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.222;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.454;QD=20.48;ReadPosRankSum=1.691;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1753,177,0 chrV 34350 . T C 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=3.182;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.464;QD=20.07;ReadPosRankSum=1.678;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2622,279,0 chrV 34493 . C T 2785 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.83;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2818,288,0 chrV 34622 . T C 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=117;Dels=0.00;FS=10.966;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.043;QD=23.44;ReadPosRankSum=2.871;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2776,288,0 chrV 34811 . C T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.03;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4005,406,0 chrV 35048 . C T 5418.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=18.4311;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.63;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5418,544,0 chrV 35579 . T G 4262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.7943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.901;QD=24.78;ReadPosRankSum=1.712;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4262,436,0 chrV 35699 . C T 4751.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.36;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4751,481,0 chrV 36053 . A C 4049.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.84;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4049,424,0 chrV 36245 . T A 2549 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.3336;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.72;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2582,267,0 chrV 36420 . G A 2510 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.42;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2543,261,0 chrV 36559 . C T 5017.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.47;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5017,511,0 chrV 36687 . G A 4322.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.3386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4322,433,0 chrV 37036 . G A 4569.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.4454;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.26;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4569,451,0 chrV 37407 . T C 1754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.230;QD=25.42;ReadPosRankSum=1.682;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1787,189,0 chrV 37441 . A T 1703 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.61;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1736,177,0 chrV 37539 . T C 1730 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.37;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1763,186,0 chrV 37747 . G A 2062 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.17;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2095,210,0 chrV 38676 . A G 4923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.4745;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.531;QD=24.74;ReadPosRankSum=1.645;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4923,508,0 chrV 38716 . C T 5309.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=15.0784;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.39;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5309,532,0 chrV 38956 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.39;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3120,321,0 chrV 39238 . G A 2431 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=17.62;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2464,246,0 chrV 39304 . G A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.8359;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.06;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3486,355,0 chrV 39493 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.0401;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.14;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2787,288,0 chrV 39580 . C A 2024 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.68;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2057,207,0 chrV 39651 . T A 1589 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=24.45;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1622,165,0 chrV 39664 . C T 1344 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.17;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1377,138,0 chrV 40307 . A G 4998.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.5359;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.03;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4998,514,0 chrV 40520 . C T 5700.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=12.9532;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.05;SB=-3.215e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5700,601,0 chrV 40622 . G A 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=221;Dels=0.00;FS=2.983;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-0.761;QD=17.60;ReadPosRankSum=2.327;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:3889,409,0 chrV 40623 . A G 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.389;DP=222;Dels=0.00;FS=8.815;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-0.084;QD=17.38;ReadPosRankSum=3.413;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:4,215:222:99:3858,420,0 chrV 40835 . A G 7660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=313;Dels=0.00;FS=4.985;HaplotypeScore=11.1882;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=1.232;QD=24.47;ReadPosRankSum=1.710;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:1,312:313:99:7660,808,0 chrV 40988 . A G 8627.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;DP=392;Dels=0.00;FS=4.911;HaplotypeScore=27.5840;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.894;QD=22.01;ReadPosRankSum=3.391;SB=-3.128e+03 GT:AD:DP:GQ:PL 1/1:4,387:392:99:8627,901,0 chrV 41075 . G A 4561.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.9469;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.92;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:4561,463,0 chrV 41138 . C T 4393.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.9703;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.30;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:4393,439,0 chrV 41273 . G A 3435.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=21.47;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3435,346,0 chrV 41275 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=162;Dels=0.00;FS=2.940;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.299;QD=19.81;ReadPosRankSum=2.419;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:3243,342,0 chrV 41357 . G A 4931.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.98;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4931,514,0 chrV 41366 . G A 5581.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=12.0203;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.32;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,246:250:99:5581,568,0 chrV 41432 . C G 5684.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=10.9959;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=23.11;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5684,595,0 chrV 41545 . T C 5595.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=22.0534;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=20.20;SB=-3.672e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:5595,580,0 chrV 41687 . A C 6587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=295;Dels=0.00;FS=3.024;HaplotypeScore=12.0488;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.305;QD=22.33;ReadPosRankSum=2.433;SB=-4.091e+03 GT:AD:DP:GQ:PL 1/1:2,292:295:99:6587,682,0 chrV 41711 . C G 5855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.801;DP=283;Dels=0.00;FS=12.171;HaplotypeScore=21.0427;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.926;QD=20.69;ReadPosRankSum=3.521;SB=-3.759e+03 GT:AD:DP:GQ:PL 1/1:5,274:283:99:5855,616,0 chrV 42051 . C A 3221.02 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.51;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3254,334,0 chrV 42238 . A T 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.478;QD=20.45;ReadPosRankSum=2.367;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2466,261,0 chrV 42418 . G A 3096 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.2864;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.27;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3129,330,0 chrV 42780 . C G 7604.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=16.0715;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.61;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,305:309:99:7604,775,0 chrV 43070 . G A 4141.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=2.0641;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.91;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4141,435,0 chrV 43074 . T C 4232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.705;DP=208;Dels=0.00;FS=22.816;HaplotypeScore=4.4736;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=-0.088;QD=20.35;ReadPosRankSum=3.728;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:5,200:208:99:4232,439,0 chrV 43189 . T C 5959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.245;DP=234;Dels=0.00;FS=5.186;HaplotypeScore=23.8542;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.121;QD=25.47;ReadPosRankSum=3.408;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:4,230:234:99:5959,622,0 chrV 43494 . A G 6672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.192;DP=323;Dels=0.00;FS=8.352;HaplotypeScore=24.4990;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.635;QD=20.66;ReadPosRankSum=3.435;SB=-3.504e+03 GT:AD:DP:GQ:PL 1/1:4,319:323:99:6672,706,0 chrV 43578 . A G 9378.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=375;Dels=0.00;FS=3.560;HaplotypeScore=23.5292;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.740;QD=25.01;ReadPosRankSum=1.676;SB=-4.590e+03 GT:AD:DP:GQ:PL 1/1:2,369:375:99:9378,967,0 chrV 43817 . C T 6732.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=20.2038;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.79;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:0,307:309:99:6732,706,0 chrV 43959 . G A 5651.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.64;SB=-2.869e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5651,568,0 chrV 44019 . C T 4643.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.5177;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4643,490,0 chrV 44529 . A G 5555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=233;Dels=0.00;FS=6.029;HaplotypeScore=12.2196;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.429;QD=23.84;ReadPosRankSum=2.935;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:3,229:233:99:5555,586,0 chrV 44601 . T G 5397.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=7.4806;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=22.39;SB=-3.287e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5397,565,0 chrV 44613 . T C 5032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=4.9893;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-0.399;QD=21.97;ReadPosRankSum=0.904;SB=-3.044e+03 GT:AD:DP:GQ:PL 1/1:1,225:229:99:5032,535,0 chrV 44641 . A G 4393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=218;Dels=0.00;FS=6.713;HaplotypeScore=15.5500;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.233;QD=20.15;ReadPosRankSum=2.427;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:2,214:218:99:4393,457,0 chrV 44763 . A G 6226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=239;Dels=0.00;FS=3.352;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.539;QD=26.05;ReadPosRankSum=1.718;SB=-3.038e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:6226,643,0 chrV 44810 . T C 4846.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.4497;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.08;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4846,505,0 chrV 44860 . A G 4729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.8036;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.632;QD=22.31;ReadPosRankSum=1.716;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4729,499,0 chrV 44999 . C G 3398.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.93;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3398,354,0 chrV 45023 . G A 3621.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.80;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3621,370,0 chrV 45606 . C T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3743,376,0 chrV 45963 . T C 4305.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.52;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4305,456,0 chrV 46022 . C T 3903.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=22.30;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3903,400,0 chrV 46030 . C G 3722.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.8487;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.89;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3722,390,0 chrV 46209 . T A 3307.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.29;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3307,340,0 chrV 46329 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7667;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=24.97;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2580,267,0 chrV 46348 . C T 2385 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=24.84;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2418,243,0 chrV 46749 . T C 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.518;DP=158;Dels=0.00;FS=5.267;HaplotypeScore=140.6996;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=-0.360;QD=20.18;ReadPosRankSum=2.551;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:4,154:158:99:3222,339,0 chrV 46814 . C T 3960.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.3198;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.00;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3960,394,0 chrV 46866 . T C 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=3.293;HaplotypeScore=16.6882;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=1.296;QD=22.92;ReadPosRankSum=1.708;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3301,342,0 chrV 46910 . A G 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=174;Dels=0.00;FS=3.029;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.343;QD=23.31;ReadPosRankSum=2.363;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:2,169:174:99:4056,426,0 chrV 46984 . C T 4816.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.7130;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.19;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4816,502,0 chrV 47089 . T C 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.889;QD=19.74;ReadPosRankSum=2.386;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:3791,400,0 chrV 47091 . A G 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=4.861;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.742;QD=19.46;ReadPosRankSum=1.714;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:3834,400,0 chrV 47165 . A G 4394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-1.649;QD=21.13;ReadPosRankSum=1.715;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4394,457,0 chrV 47764 . A G 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.659;QD=22.10;ReadPosRankSum=1.635;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3215,339,0 chrV 48016 . C T 3882.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.73;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3882,397,0 chrV 48081 . C G 4547.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.5574;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=19.86;SB=-3.000e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4547,469,0 chrV 48099 . T C 4187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.422;DP=226;Dels=0.00;FS=9.135;HaplotypeScore=2.7587;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-1.004;QD=18.53;ReadPosRankSum=3.422;SB=-3.155e+03 GT:AD:DP:GQ:PL 1/1:4,221:226:99:4187,433,0 chrV 48112 . G A 4129.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=18.94;SB=-3.074e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4129,418,0 chrV 48124 . A G 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=210;Dels=0.00;FS=3.002;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=-0.694;QD=17.63;ReadPosRankSum=0.267;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:2,205:210:99:3703,379,0 chrV 48175 . C T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.6905;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.99;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3839,388,0 chrV 48289 . A G 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.9682;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=1.397;QD=21.75;ReadPosRankSum=1.693;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3849,408,0 chrV 48384 . T C 3881.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=24.26;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3881,403,0 chrV 48555 . T C 4615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.095;QD=25.22;ReadPosRankSum=1.713;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4615,489,0 chrV 48609 . G A 4384.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=24.09;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4384,454,0 chrV 48636 . C T 4617.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=24.96;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4617,457,0 chrV 48663 . G A 4194.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=24.24;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:4194,415,0 chrV 48745 . A G 3835.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.69;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3835,400,0 chrV 48831 . A G 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=168;Dels=0.00;FS=3.033;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;MQRankSum=-1.302;QD=23.63;ReadPosRankSum=2.420;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3970,420,0 chrV 48849 . T C 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=181;Dels=0.00;FS=6.241;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=0.457;QD=21.15;ReadPosRankSum=2.422;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3829,411,0 chrV 48856 . A G 4004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8227;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=0.596;QD=21.41;ReadPosRankSum=1.675;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:1,182:187:99:4004,417,0 chrV 48897 . T C 2978 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=19.85;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3011,315,0 chrV 48946 . A G 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.936;DP=142;Dels=0.00;FS=2.504;HaplotypeScore=10.9566;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=2.100;QD=23.11;ReadPosRankSum=2.709;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3281,348,0 chrV 48972 . G A 3923.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5454;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=26.33;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3923,394,0 chrV 49043 . T G 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-1.511;QD=23.23;ReadPosRankSum=1.714;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4367,454,0 chrV 49056 . A G 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.1396;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.037;QD=20.95;ReadPosRankSum=1.714;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3960,420,0 chrV 49185 . G A 5117.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.7056;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.37;SB=-2.790e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5117,514,0 chrV 49341 . C T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.42;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3406,346,0 chrV 49397 . T C 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=174;Dels=0.00;FS=4.848;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.023;QD=17.53;ReadPosRankSum=1.712;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:3084,324,0 chrV 49751 . C T 3142 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.94;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3175,319,0 chrV 49908 . T C 4138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.9366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.420;QD=24.49;ReadPosRankSum=1.650;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4138,436,0 chrV 50125 . A T 4935.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.9587;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.57;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4935,499,0 chrV 50151 . A C 4412.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.11;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4412,460,0 chrV 50218 . A G 4213.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.2495;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.53;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4213,430,0 chrV 50678 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=18.2094;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.69;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3137,313,0 chrV 50835 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.7731;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3488,363,0 chrV 50918 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.07;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2582,273,0 chrV 51087 . T C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.590;QD=23.39;ReadPosRankSum=1.704;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2886,303,0 chrV 51251 . T C 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=161;Dels=0.00;FS=2.877;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.069;QD=24.81;ReadPosRankSum=2.327;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3995,409,0 chrV 51366 . G A 3196 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.36;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3229,333,0 chrV 51375 . C T 3338.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.26;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3338,343,0 chrV 51423 . G A 3752.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.69;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3752,379,0 chrV 51780 . A G 3500.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.4098;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.31;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3500,366,0 chrV 51822 . C T 4794.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.64;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4794,484,0 chrV 51919 . T C 4659.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4659,490,0 chrV 51959 . C T 5188.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.43;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5188,547,0 chrV 52448 . A T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.342;DP=80;Dels=0.00;FS=4.407;HaplotypeScore=76.3002;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.736;QD=0.19;ReadPosRankSum=1.602;SB=-8.088e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:6:46,6,0 chrV 53456 . G A 3464.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.8124;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=21.38;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3464,346,0 chrV 53463 . A G 3209.99 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.8972;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.99;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3243,331,0 chrV 53537 . G T 4728.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.2226;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.09;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4728,466,0 chrV 53618 . T G 5357.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.50;SB=-2.938e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5357,553,0 chrV 53704 . T C 4693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=207;Dels=0.00;FS=5.735;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=1.211;QD=22.67;ReadPosRankSum=1.665;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4693,484,0 chrV 53896 . C T 2776 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.53;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2809,280,0 chrV 54363 . C T 2555 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.2141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2588,261,0 chrV 55132 . G C 5113.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:5113,535,0 chrV 55841 . C T 5016.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.4945;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=25.33;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:5016,505,0 chrV 56129 . A C 3871.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=23.18;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3871,403,0 chrV 56149 . A C 3589.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=22.02;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3589,378,0 chrV 56166 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=19.80;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3221,316,0 chrV 56171 . A G 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=175;Dels=0.00;FS=3.014;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.721;QD=17.75;ReadPosRankSum=2.407;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:2,170:175:99:3140,327,0 chrV 56315 . T C 4982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.3745;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.278;QD=25.68;ReadPosRankSum=1.714;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4982,520,0 chrV 56394 . A G 4296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-0.457;QD=23.35;ReadPosRankSum=1.713;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:4296,448,0 chrV 57203 . C T 4512.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.5593;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=24.93;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4512,457,0 chrV 57448 . A G 4283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.4640;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-1.344;QD=19.56;ReadPosRankSum=2.821;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:3,216:219:99:4283,468,0 chrV 57449 . T A 4285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=219;Dels=0.00;FS=3.940;HaplotypeScore=5.1979;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-1.033;QD=19.57;ReadPosRankSum=1.684;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4285,468,0 chrV 57614 . G A 4028.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=25.82;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4028,406,0 chrV 57806 . T C 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.125;DP=195;Dels=0.01;FS=10.698;HaplotypeScore=8.9581;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=1.038;QD=21.71;ReadPosRankSum=4.147;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:6,188:194:99:4234,445,0 chrV 57836 . T C 2938 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.7618;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=17.49;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2971,321,0 chrV 57855 . T A 2269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.665;DP=170;Dels=0.00;FS=4.295;HaplotypeScore=8.0559;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;MQRankSum=-0.083;QD=13.35;ReadPosRankSum=3.062;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:5,165:170:99:2302,223,0 chrV 57861 . T C 2663 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=15.95;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2696,285,0 chrV 57900 . T C 2924 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.9414;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=18.51;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2957,306,0 chrV 58022 . A G 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.474;QD=22.29;ReadPosRankSum=1.715;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4480,466,0 chrV 58103 . C A 3044 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.9698;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=21.44;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3077,315,0 chrV 58114 . A G 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.626;DP=133;Dels=0.00;FS=2.587;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=1.420;QD=19.90;ReadPosRankSum=2.947;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:2680,282,0 chrV 58183 . A G 4235.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.7193;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=25.36;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4235,445,0 chrV 58245 . T C 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.3920;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.872;QD=25.25;ReadPosRankSum=1.688;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3989,423,0 chrV 59461 . T C 1397 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=26.36;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1430,147,0 chrV 59504 . G A 1186 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.04;FS=0.000;HaplotypeScore=18.4143;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.25;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1219,126,0 chrV 59555 . G A 1871 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.28;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1904,198,0 chrV 60057 . A G 5917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=238;Dels=0.00;FS=12.133;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.140;QD=24.86;ReadPosRankSum=2.945;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:3,234:238:99:5917,622,0 chrV 60147 . G C 4386.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.04;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,195:199:99:4386,463,0 chrV 60162 . C T 4436.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.75;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4436,466,0 chrV 62154 . G A 818 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=2;QD=22.11;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:84:851,84,0 chrV 62366 . G T 1584 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=29.84;MQ0=4;QD=24.75;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:3,61:64:99:1617,162,0 chrV 63695 . T C 4059.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.9321;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.82;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4059,424,0 chrV 63847 . A C 5028.01 filter AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=18.5028;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=8;QD=19.64;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:0,252:256:99:5028,523,0 chrV 66224 . C A 4064.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.1182;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.97;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4064,426,0 chrV 66244 . T G 4024.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.29;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4024,421,0 chrV 68702 . C G 6270.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=15.3846;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.72;SB=-3.420e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:6270,664,0 chrV 70531 . G A 2166 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.48;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:2199,222,0 chrV 70702 . C T 4755.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.5385;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.89;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4755,496,0 chrV 70852 . T C 6390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.111;DP=266;Dels=0.00;FS=13.964;HaplotypeScore=18.3613;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.531;QD=24.02;ReadPosRankSum=3.428;SB=-2.999e+03 GT:AD:DP:GQ:PL 1/1:4,260:266:99:6390,673,0 chrV 70969 . A T 4399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.9539;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.263;QD=21.78;ReadPosRankSum=2.425;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4399,463,0 chrV 72694 . T G 6528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.192;DP=284;Dels=0.00;FS=4.010;HaplotypeScore=20.2512;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.216;QD=22.99;ReadPosRankSum=0.970;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:1,281:284:99:6528,670,0 chrV 72800 . C G 6848.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.54;SB=-3.508e+03 GT:AD:DP:GQ:PL 1/1:0,276:279:99:6848,703,0 chrV 72942 . C T 7120.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=13.9724;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.19;SB=-3.689e+03 GT:AD:DP:GQ:PL 1/1:0,307:307:99:7120,751,0 chrV 72990 . T G 6674.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.03;SB=-4.036e+03 GT:AD:DP:GQ:PL 1/1:0,300:303:99:6674,703,0 chrV 73003 . T A 6233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=294;Dels=0.00;FS=6.043;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-1.884;QD=21.20;ReadPosRankSum=2.963;SB=-4.008e+03 GT:AD:DP:GQ:PL 1/1:3,291:294:99:6233,631,0 chrV 73131 . G A 6824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=19.8330;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.133;QD=24.72;ReadPosRankSum=0.983;SB=-3.247e+03 GT:AD:DP:GQ:PL 1/1:1,272:276:99:6824,685,0 chrV 73422 . T C 1488 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.62;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1521,159,0 chrV 73592 . C T 1557 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=20.76;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1590,159,0 chrV 73600 . G C 1527 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=19.83;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1560,162,0 chrV 73670 . G A 2657 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=24.83;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2690,268,0 chrV 73686 . C T 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8431;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.992;QD=24.22;ReadPosRankSum=1.110;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2867,297,0 chrV 74271 . T G 5428.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.60;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5428,571,0 chrV 75225 . A G 3913.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.0420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3913,406,0 chrV 75368 . G A 3863.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.70;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3863,382,0 chrV 75516 . A C 2758 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.06;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2791,291,0 chrV 75539 . T C 2594 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.92;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2627,279,0 chrV 75589 . G A 1964 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.11;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1997,201,0 chrV 75594 . C T 1803 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.72;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1836,183,0 chrV 75731 . T G 1962 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.10;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1995,204,0 chrV 75745 . A G 1833 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.14;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1866,192,0 chrV 75860 . A C 2043 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=26.88;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2076,216,0 chrV 76029 . A G 3615.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.8359;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=26.39;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3615,370,0 chrV 76078 . C T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=26.53;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3396,340,0 chrV 76107 . G C 3329.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.2057;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.12;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3329,345,0 chrV 76232 . C A 4260.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=17.5539;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.34;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:4260,442,0 chrV 76273 . A C 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.423;QD=25.97;ReadPosRankSum=1.666;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:4077,432,0 chrV 76357 . A G 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=3.174;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.647;QD=24.88;ReadPosRankSum=1.711;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4030,423,0 chrV 76382 . A G 4194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=173;Dels=0.00;FS=6.306;HaplotypeScore=5.0248;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-1.070;QD=24.24;ReadPosRankSum=2.263;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:2,169:173:99:4194,444,0 chrV 76472 . A G 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=147;Dels=0.00;FS=6.022;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.021;QD=24.21;ReadPosRankSum=2.952;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:3,143:147:99:3559,375,0 chrV 76636 . G A 3552.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=15.2468;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.33;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3552,364,0 chrV 76912 . A G 4703.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.88;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4703,490,0 chrV 77032 . A G 4664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=208;Dels=0.00;FS=6.040;HaplotypeScore=19.6546;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.580;QD=22.42;ReadPosRankSum=2.947;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:4664,493,0 chrV 77098 . T C 3958.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.9603;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.63;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3958,429,0 chrV 77310 . G A 4152.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=20.0431;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.42;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:4152,412,0 chrV 77423 . G T 2982 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.59;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3015,304,0 chrV 77444 . T C 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.817;DP=159;Dels=0.00;FS=6.091;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.070;QD=22.51;ReadPosRankSum=2.918;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:3579,370,0 chrV 77500 . G A 4497.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.79;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4497,466,0 chrV 77558 . C T 4565.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4565,463,0 chrV 77918 . C T 1584 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1617,168,0 chrV 78484 . A G 5162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=224;Dels=0.00;FS=6.012;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.561;QD=23.04;ReadPosRankSum=2.878;SB=-3.034e+03 GT:AD:DP:GQ:PL 1/1:3,219:224:99:5162,532,0 chrV 78595 . C G 4597.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=22.4133;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.28;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,212:216:99:4597,489,0 chrV 78787 . C T 3935.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.1187;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.14;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3935,403,0 chrV 78893 . T G 5038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.360;DP=227;Dels=0.00;FS=13.713;HaplotypeScore=7.3791;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=0.771;QD=22.19;ReadPosRankSum=3.375;SB=-2.880e+03 GT:AD:DP:GQ:PL 1/1:4,221:226:99:5038,517,0 chrV 78895 . C G 4846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-1.113;QD=21.54;ReadPosRankSum=1.639;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:4846,505,0 chrV 79059 . T C 7204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=13.7387;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-1.393;QD=25.10;ReadPosRankSum=1.720;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:1,285:287:99:7204,757,0 chrV 79285 . A G 4750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;DP=263;Dels=0.00;FS=7.953;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-0.182;QD=18.06;ReadPosRankSum=3.428;SB=-2.933e+03 GT:AD:DP:GQ:PL 1/1:4,259:263:99:4750,493,0 chrV 79309 . C T 4209.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.27;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4209,421,0 chrV 79396 . C T 3834.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.03;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3834,405,0 chrV 79416 . G A 4364.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=22.38;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4364,448,0 chrV 79508 . T A 844 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=6.2317;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=16.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:93:877,93,0 chrV 79544 . T C 112.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=7.404;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.474;QD=10.21;ReadPosRankSum=1.107;SB=-3.024e+01 GT:AD:DP:GQ:PL 1/1:1,10:11:15:145,15,0 chrV 79549 . C T 144.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=13.10;SB=-5.807e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:177,18,0 chrV 79607 . G A 321 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=13.96;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:36:354,36,0 chrV 79621 . C G 354 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=0;QD=7.87;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:42:387,42,0 chrV 79626 . A G 469 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;QD=9.57;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,47:49:51:502,51,0 chrV 79648 . C T 963 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=14.16;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:996,102,0 chrV 80081 . C T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=23.40;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3791,385,0 chrV 80083 . C T 3625.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=22.80;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3625,373,0 chrV 80096 . A G 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=3.950;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;MQRankSum=-1.500;QD=19.54;ReadPosRankSum=1.686;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2944,309,0 chrV 80128 . A C 2389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=149;Dels=0.00;FS=7.886;HaplotypeScore=104.3072;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=0;MQRankSum=-0.922;QD=16.03;ReadPosRankSum=2.416;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2422,249,0 chrV 80153 . C T 2294 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=15.50;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2327,234,0 chrV 80182 . T C 3105 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=20.03;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3138,327,0 chrV 80303 . T A 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=149;Dels=0.00;FS=6.978;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;MQRankSum=1.311;QD=25.17;ReadPosRankSum=2.400;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3750,391,0 chrV 80416 . T A 5917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.6764;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.206;QD=26.07;ReadPosRankSum=1.656;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:5917,589,0 chrV 80437 . G C 4614.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.30;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4614,487,0 chrV 80485 . C T 4441.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=21.77;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4441,451,0 chrV 80509 . G A 5084.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=23.00;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5084,543,0 chrV 80541 . T C 5268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=255;Dels=0.00;FS=2.714;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=-1.101;QD=20.66;ReadPosRankSum=2.382;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:2,252:255:99:5268,553,0 chrV 80557 . T G 5430.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.41;SB=-3.085e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:5430,571,0 chrV 80633 . A G 6137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=270;Dels=0.00;FS=3.027;HaplotypeScore=17.2754;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.639;QD=22.73;ReadPosRankSum=2.431;SB=-3.556e+03 GT:AD:DP:GQ:PL 1/1:2,265:270:99:6137,652,0 chrV 80671 . G A 5792.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=23.74;SB=-3.302e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5792,616,0 chrV 80717 . G A 5605.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.6376;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=24.48;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5605,565,0 chrV 80728 . C G 5521.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=23.70;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5521,568,0 chrV 80737 . A G 5377.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=23.69;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5377,559,0 chrV 80932 . T A 4068.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.7557;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.93;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4068,412,0 chrV 81049 . C T 2819 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.69;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2852,288,0 chrV 81128 . A G 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.730;QD=21.62;ReadPosRankSum=2.413;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2908,306,0 chrV 81181 . A G 1213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.219;QD=19.89;ReadPosRankSum=3.307;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:4,57:61:99:1246,132,0 chrV 81293 . A G 2256 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.26;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2289,234,0 chrV 81333 . T A 2637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.186;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.1480;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.956;QD=21.97;ReadPosRankSum=2.595;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:4,114:120:99:2670,288,0 chrV 81356 . A G 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=10.453;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.139;QD=26.06;ReadPosRankSum=1.670;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2926,300,0 chrV 81401 . A G 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=107;Dels=0.00;FS=9.114;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.000;QD=23.32;ReadPosRankSum=1.699;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2528,264,0 chrV 81713 . G A 8469.01 PASS AC=2;AF=1.00;AN=2;DP=355;Dels=0.00;FS=0.000;HaplotypeScore=17.2850;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.86;SB=-4.274e+03 GT:AD:DP:GQ:PL 1/1:0,353:355:99:8469,853,0 chrV 82262 . T A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.6925;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.22;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3414,352,0 chrV 82641 . T A 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=161;Dels=0.00;FS=2.580;HaplotypeScore=19.0696;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-1.244;QD=23.67;ReadPosRankSum=2.581;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3811,399,0 chrV 82669 . G A 4152.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=28.05;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4152,421,0 chrV 82782 . A G 2771 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.71;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2804,294,0 chrV 82875 . T G 1635 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=11.85;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:1668,177,0 chrV 82923 . A T 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.5340;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=1.137;QD=19.69;ReadPosRankSum=1.680;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2672,265,0 chrV 82928 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=18.93;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2570,267,0 chrV 82970 . A G 3104 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.56;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3137,327,0 chrV 83138 . G A 4938.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=25.45;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4938,502,0 chrV 83167 . C T 4774.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.3550;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.63;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4774,478,0 chrV 83329 . G T 4654.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.7521;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.16;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4654,490,0 chrV 83473 . G A 4130.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.0729;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.62;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:4130,421,0 chrV 83548 . C T 5433.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=12.7470;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.65;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5433,544,0 chrV 83617 . T C 6165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=281;Dels=0.00;FS=3.122;HaplotypeScore=25.3931;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.724;QD=21.94;ReadPosRankSum=1.707;SB=-3.612e+03 GT:AD:DP:GQ:PL 1/1:1,274:281:99:6165,652,0 chrV 83692 . G A 6378.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=14.7373;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.28;SB=-3.758e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6378,643,0 chrV 84797 . G A 2684 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.84;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2717,279,0 chrV 85009 . G A 4946.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.0954;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.90;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4946,499,0 chrV 85693 . T C 6674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.721;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=5.6540;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.744;QD=21.88;ReadPosRankSum=1.687;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:1,304:305:99:6674,709,0 chrV 85711 . C T 6908.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=18.8525;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.59;SB=-3.458e+03 GT:AD:DP:GQ:PL 1/1:0,319:320:99:6908,703,0 chrV 89021 . G T 3997.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3997,403,0 chrV 90719 . C T 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.323;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=0.866;QD=22.08;ReadPosRankSum=-0.577;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3234,301,0 chrV 90720 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.72;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3182,321,0 chrV 90830 . A G 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.323;DP=132;Dels=0.00;FS=16.228;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.775;QD=24.17;ReadPosRankSum=3.350;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:4,126:132:99:3224,333,0 chrV 91322 . G A 5340.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.73;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5340,532,0 chrV 91496 . A T 5582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.1620;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.420;QD=24.59;ReadPosRankSum=1.686;SB=-3.057e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:5582,559,0 chrV 91637 . C T 5223.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.85;SB=-2.993e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5223,535,0 chrV 91715 . C T 4978.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.40;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4978,502,0 chrV 91751 . G A 3684.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.88;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3684,390,0 chrV 94784 . A G 4394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=176;Dels=0.00;FS=8.781;HaplotypeScore=14.0614;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.400;QD=24.97;ReadPosRankSum=2.407;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4394,465,0 chrV 96109 . C T 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=138;Dels=0.00;FS=5.717;HaplotypeScore=8.6989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.054;QD=25.14;ReadPosRankSum=0.828;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3469,358,0 chrV 96439 . G T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.32;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3342,331,0 chrV 97416 . G A 2640 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2673,279,0 chrV 98040 . A G 4083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.01;FS=3.287;HaplotypeScore=15.4114;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;MQRankSum=1.091;QD=25.05;ReadPosRankSum=1.711;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4083,424,0 chrV 98574 . G A 4615.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=16.7083;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.67;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4615,454,0 chrV 98857 . G T 5695.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.93;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5695,586,0 chrV 98997 . C T 8826.01 PASS AC=2;AF=1.00;AN=2;DP=344;Dels=0.00;FS=0.000;HaplotypeScore=24.2850;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.66;SB=-3.829e+03 GT:AD:DP:GQ:PL 1/1:0,343:344:99:8826,881,0 chrV 99314 . G A 5095.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=17.7021;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5095,514,0 chrV 99489 . T C 4713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.253;DP=196;Dels=0.00;FS=8.489;HaplotypeScore=19.6769;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.957;QD=24.05;ReadPosRankSum=3.406;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:4,190:196:99:4713,493,0 chrV 103136 . A G 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.184;DP=150;Dels=0.00;FS=2.885;HaplotypeScore=16.1083;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.042;QD=23.11;ReadPosRankSum=2.416;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:2,146:150:99:3466,355,0 chrV 103569 . T C 4425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.205;DP=181;Dels=0.00;FS=2.793;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.282;QD=24.45;ReadPosRankSum=2.341;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4425,460,0 chrV 104404 . C T 4211.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.2851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4211,436,0 chrV 104442 . T C 3572.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3572,367,0 chrV 105743 . G A 5008.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=18.5148;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.92;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:5008,502,0 chrV 106481 . A G 2657 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.9710;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=0;MQRankSum=-1.732;QD=16.71;ReadPosRankSum=1.667;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2690,288,0 chrV 106489 . G C 2228 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;QD=15.80;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2261,237,0 chrV 106491 . T A 2291 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;QD=16.25;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2324,234,0 chrV 106493 . G C 2291 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.73;MQ0=0;QD=15.91;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2324,234,0 chrV 106501 . C T 2076 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=13.93;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2109,225,0 chrV 107341 . C G 4145.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4145,427,0 chrV 108989 . A G 1711 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.3732;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=10.90;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:1744,186,0 chrV 109308 . T C 3581.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.81;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3581,378,0 chrV 111431 . G A 5369.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.7226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.53;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5369,535,0 chrV 112225 . C G 6556.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=11.0572;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.10;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:0,270:272:99:6556,706,0 chrV 113148 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.1929;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.81;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3572,361,0 chrV 114999 . G A 2889 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.57;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2922,294,0 chrV 117072 . C T 2647 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.0480;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.35;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2680,270,0 chrV 117134 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.410;QD=23.40;ReadPosRankSum=1.683;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3276,348,0 chrV 117705 . T A 4178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.256;QD=26.11;ReadPosRankSum=1.689;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:4178,421,0 chrV 117889 . C T 5458.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.1210;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5458,553,0 chrV 118304 . A G 3336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.9628;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.683;QD=23.83;ReadPosRankSum=1.707;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3336,351,0 chrV 119169 . T A 7672.01 PASS AC=2;AF=1.00;AN=2;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=18.5641;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.46;SB=-3.805e+03 GT:AD:DP:GQ:PL 1/1:0,327:327:99:7672,766,0 chrV 125141 . A G 5135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=232;Dels=0.00;FS=3.750;HaplotypeScore=11.1187;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.241;QD=22.13;ReadPosRankSum=1.702;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:1,229:232:99:5135,550,0 chrV 125474 . C T 4390.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.4531;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4390,445,0 chrV 130174 . T C 3536.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.08;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3536,369,0 chrV 130887 . G A 1411 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.52;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1444,156,0 chrV 132567 . T C 359.52 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;DP=34;Dels=0.00;FS=4.755;HaplotypeScore=12.6036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.346;QD=10.57;ReadPosRankSum=-2.244;SB=-1.315e+02 GT:AD:DP:GQ:PL 0/1:7,24:34:6:389,0,6 chrV 132767 . T A 3067 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=27.14;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3100,307,0 chrV 135613 . A C 12.99 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.729;DP=29;Dels=0.00;FS=7.782;HaplotypeScore=12.4048;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=15;MQRankSum=-1.159;QD=0.45;ReadPosRankSum=-0.876;SB=1.28 GT:AD:DP:GQ:PL 1/1:19,4:29:6:44,6,0 chrV 139492 . T G 6039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=16.5883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.247;QD=25.16;ReadPosRankSum=1.688;SB=-3.292e+03 GT:AD:DP:GQ:PL 1/1:1,237:240:99:6039,619,0 chrV 140700 . C T 6130.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.31;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6130,613,0 chrV 141061 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.24;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3610,373,0 chrV 141117 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=159;Dels=0.00;FS=3.670;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.443;QD=20.30;ReadPosRankSum=1.688;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:3261,348,0 chrV 141189 . G A 4042.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.20;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4042,409,0 chrV 141400 . A G 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=173;Dels=0.00;FS=2.562;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.288;QD=20.28;ReadPosRankSum=2.865;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:3508,372,0 chrV 141521 . T A 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=146;Dels=0.00;FS=5.381;HaplotypeScore=15.8671;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.206;QD=23.60;ReadPosRankSum=1.660;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3445,354,0 chrV 141779 . T C 4675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.278;QD=25.41;ReadPosRankSum=1.675;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4675,490,0 chrV 142607 . C A 1987 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.65;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2020,201,0 chrV 143848 . A G 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.109;QD=21.47;ReadPosRankSum=2.382;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3211,333,0 chrV 144411 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.2469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3789,388,0 chrV 145503 . A G 2334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.500;QD=22.44;ReadPosRankSum=1.699;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2367,246,0 chrV 150968 . G A 3716.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.28;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3716,376,0 chrV 151984 . T C 918 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:47:99:951,99,0 chrV 152484 . T C 6536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=252;Dels=0.00;FS=2.877;HaplotypeScore=12.4152;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.611;QD=25.94;ReadPosRankSum=2.391;SB=-2.858e+03 GT:AD:DP:GQ:PL 1/1:2,249:252:99:6536,676,0 chrV 153593 . C T 5281.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.7194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-2.894e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5281,532,0 chrV 153989 . G T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.37;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3603,361,0 chrV 154531 . T A 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.757;DP=145;Dels=0.00;FS=5.888;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.826;QD=23.68;ReadPosRankSum=2.868;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3434,354,0 chrV 154798 . G C 2910 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.8520;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2943,303,0 chrV 154908 . A T 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=1.071;QD=23.90;ReadPosRankSum=1.706;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3164,327,0 chrV 154915 . A C 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.191;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.592;QD=21.75;ReadPosRankSum=1.849;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2991,282,0 chrV 157149 . G A 5649.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=13.6549;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.45;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5649,580,0 chrV 159624 . G A 6828.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=17.8225;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.83;SB=-3.088e+03 GT:AD:DP:GQ:PL 1/1:0,273:275:99:6828,691,0 chrV 160010 . T C 5280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=228;Dels=0.00;FS=6.636;HaplotypeScore=16.6924;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.254;QD=23.16;ReadPosRankSum=2.428;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:2,225:228:99:5280,544,0 chrV 162975 . G A 5965.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=10.6633;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.35;SB=-3.306e+03 GT:AD:DP:GQ:PL 1/1:0,241:245:99:5965,595,0 chrV 163290 . A G 5100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=202;Dels=0.00;FS=3.011;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.383;QD=25.25;ReadPosRankSum=2.401;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:5100,526,0 chrV 163466 . A C 5540.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.8281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5540,586,0 chrV 164225 . A G 3170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.406;QD=22.97;ReadPosRankSum=1.707;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3203,339,0 chrV 164411 . G A 2151 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:2184,219,0 chrV 164498 . T C 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=0.869;QD=22.26;ReadPosRankSum=2.387;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:2,76:80:99:1814,186,0 chrV 164516 . T G 1922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.778;QD=22.88;ReadPosRankSum=2.391;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1955,204,0 chrV 164685 . C T 2977 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.9421;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.82;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3010,301,0 chrV 165294 . G A 2433 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.09;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2466,255,0 chrV 165547 . T G 4604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.3911;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.028;QD=24.49;ReadPosRankSum=1.658;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4604,484,0 chrV 165776 . A G 3396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.1973;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-2.328;QD=20.71;ReadPosRankSum=2.419;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:3,160:164:99:3396,352,0 chrV 165924 . G A 3531.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=13.5886;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3531,364,0 chrV 166089 . G A 2288 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.59;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2321,234,0 chrV 166422 . A G 4555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.561;QD=25.03;ReadPosRankSum=1.656;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4555,475,0 chrV 166670 . A G 5175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=200;Dels=0.00;FS=9.764;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.685;QD=25.88;ReadPosRankSum=2.413;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:5175,538,0 chrV 168930 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2745,285,0 chrV 169109 . C T 3114 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3147,327,0 chrV 169431 . C T 2467 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.27;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2500,252,0 chrV 169452 . G A 2602 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.23;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2635,270,0 chrV 170070 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.4923;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.84;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3623,387,0 chrV 170319 . C T 3820.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.03;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3820,399,0 chrV 170676 . G A 4723.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.4863;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.62;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4723,472,0 chrV 170706 . C T 4672.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.13;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4672,469,0 chrV 174164 . T C 3343.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.95;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3343,346,0 chrV 174633 . G A 4932.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.05;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4932,525,0 chrV 175646 . A T 1998.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.037;DP=322;Dels=0.00;FS=7.836;HaplotypeScore=29.1076;MLEAC=1;MLEAF=0.500;MQ=53.48;MQ0=0;MQRankSum=-1.313;QD=6.20;ReadPosRankSum=-0.710;SB=-8.210e+02 GT:AD:DP:GQ:PL 0/1:191,128:322:99:2028,0,2268 chrV 175655 . C T 1541.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.727;DP=312;Dels=0.00;FS=18.296;HaplotypeScore=15.7942;MLEAC=1;MLEAF=0.500;MQ=53.46;MQ0=0;MQRankSum=-1.538;QD=4.94;ReadPosRankSum=-2.535;SB=-5.160e+02 GT:AD:DP:GQ:PL 0/1:208,104:312:99:1571,0,2671 chrV 175674 . T C 4387.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=20.7955;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=18.91;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4387,457,0 chrV 175817 . T C 490.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;DP=95;Dels=0.00;FS=8.352;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=40.22;MQ0=0;MQRankSum=-4.482;QD=5.16;ReadPosRankSum=-2.243;SB=-2.760e+02 GT:AD:DP:GQ:PL 0/1:54,41:95:99:520,0,808 chrV 175826 . C T 648.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.872;DP=106;Dels=0.00;FS=6.297;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=38.62;MQ0=0;MQRankSum=-3.077;QD=6.11;ReadPosRankSum=5.248;SB=-5.130e+02 GT:AD:DP:GQ:PL 0/1:46,59:106:99:678,0,557 chrV 175827 . A T 657.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;DP=102;Dels=0.00;FS=3.801;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=37.54;MQ0=0;MQRankSum=-4.120;QD=6.44;ReadPosRankSum=5.401;SB=-5.380e+02 GT:AD:DP:GQ:PL 0/1:43,59:102:99:687,0,519 chrV 175831 . A G 240.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;DP=101;Dels=0.00;FS=4.069;HaplotypeScore=1.7552;MLEAC=1;MLEAF=0.500;MQ=35.37;MQ0=0;MQRankSum=-0.026;QD=2.38;ReadPosRankSum=-5.191;SB=-2.080e+02 GT:AD:DP:GQ:PL 0/1:71,30:101:99:270,0,755 chrV 175832 . A T 224.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;DP=104;Dels=0.00;FS=5.650;HaplotypeScore=8.1104;MLEAC=1;MLEAF=0.500;MQ=36.31;MQ0=0;MQRankSum=-0.942;QD=2.15;ReadPosRankSum=-4.704;SB=-2.130e+02 GT:AD:DP:GQ:PL 0/1:75,29:104:99:254,0,837 chrV 175835 . T C 124.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.065;DP=103;Dels=0.00;FS=1.914;HaplotypeScore=8.3133;MLEAC=1;MLEAF=0.500;MQ=35.56;MQ0=0;MQRankSum=-0.873;QD=1.20;ReadPosRankSum=-6.119;SB=-1.850e+02 GT:AD:DP:GQ:PL 0/1:78,25:103:99:154,0,838 chrV 175839 . A T 352.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.022;DP=104;Dels=0.02;FS=0.000;HaplotypeScore=8.3133;MLEAC=1;MLEAF=0.500;MQ=35.87;MQ0=0;MQRankSum=0.769;QD=3.38;ReadPosRankSum=7.042;SB=-7.930e+02 GT:AD:DP:GQ:PL 0/1:22,80:102:99:382,0,139 chrV 175840 . T C 247 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=88;Dels=0.01;FS=16.285;HaplotypeScore=7.8479;MLEAC=2;MLEAF=1.00;MQ=38.64;MQ0=0;MQRankSum=-2.726;QD=2.81;ReadPosRankSum=3.030;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:4,83:87:36:280,36,0 chrV 175841 . A T 269 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.02;FS=0.000;HaplotypeScore=7.8479;MLEAC=2;MLEAF=1.00;MQ=38.64;MQ0=0;QD=3.06;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:39:302,39,0 chrV 175842 . A T 532 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.309;DP=91;Dels=0.01;FS=3.860;HaplotypeScore=7.8479;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=0;MQRankSum=-1.232;QD=5.85;ReadPosRankSum=1.309;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:72:565,72,0 chrV 177250 . C G 4028.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=16.0507;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.76;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,171:177:99:4028,424,0 chrV 178287 . T C 3984.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3984,412,0 chrV 181705 . T C 4403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=186;Dels=0.00;FS=3.783;HaplotypeScore=8.3053;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.657;QD=23.67;ReadPosRankSum=1.563;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4403,448,0 chrV 182117 . G A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6468;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.01;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3912,394,0 chrV 183957 . A G 5032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=203;Dels=0.00;FS=4.202;HaplotypeScore=15.0767;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.299;QD=24.79;ReadPosRankSum=1.645;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,199:203:99:5032,526,0 chrV 187497 . C G 2848 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2881,300,0 chrV 187642 . T C 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=6.427;HaplotypeScore=11.2811;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.945;QD=24.51;ReadPosRankSum=2.389;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2999,312,0 chrV 187838 . A G 3218.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.6137;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.56;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3251,334,0 chrV 190283 . A G 5384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=219;Dels=0.00;FS=6.242;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.499;QD=24.58;ReadPosRankSum=2.416;SB=-2.945e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:5384,571,0 chrV 190553 . C T 5235.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=18.2541;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.16;SB=-3.055e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5235,529,0 chrV 190754 . C T 4460.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.2879;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.64;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4460,460,0 chrV 190838 . A G 4687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=198;Dels=0.00;FS=5.277;HaplotypeScore=12.1764;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.026;QD=23.67;ReadPosRankSum=2.913;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:3,194:198:99:4687,487,0 chrV 191009 . T A 4347.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.0925;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.03;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4347,442,0 chrV 191818 . A G 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=159;Dels=0.00;FS=2.583;HaplotypeScore=8.8837;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=2.044;QD=22.05;ReadPosRankSum=2.931;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:3506,358,0 chrV 192065 . G T 8332.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=23.0897;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.80;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,323:323:99:8332,844,0 chrV 192377 . T G 11528.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.067;DP=530;Dels=0.00;FS=23.989;HaplotypeScore=44.7821;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.069;QD=21.75;ReadPosRankSum=4.183;SB=-5.476e+03 GT:AD:DP:GQ:PL 1/1:6,521:530:99:11528,1219,0 chrV 192719 . G A 6207.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=18.6692;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=1;QD=23.07;SB=-3.156e+03 GT:AD:DP:GQ:PL 1/1:0,266:269:99:6207,631,0 chrV 193011 . T C 5842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=256;Dels=0.00;FS=7.899;HaplotypeScore=18.9124;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.236;QD=22.82;ReadPosRankSum=2.401;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:2,253:256:99:5842,625,0 chrV 193525 . T C 6506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=273;Dels=0.00;FS=5.967;HaplotypeScore=15.9459;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.790;QD=23.83;ReadPosRankSum=2.893;SB=-3.542e+03 GT:AD:DP:GQ:PL 1/1:3,270:273:99:6506,682,0 chrV 193624 . T C 10287.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=451;Dels=0.00;FS=5.203;HaplotypeScore=31.2524;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.984;QD=22.81;ReadPosRankSum=2.953;SB=-4.362e+03 GT:AD:DP:GQ:PL 1/1:3,447:451:99:10287,1093,0 chrV 193678 . A G 10359.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=440;Dels=0.00;FS=8.549;HaplotypeScore=32.2859;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.369;QD=23.54;ReadPosRankSum=2.410;SB=-4.379e+03 GT:AD:DP:GQ:PL 1/1:2,436:440:99:10359,1079,0 chrV 193876 . G A 9545.01 filter AC=2;AF=1.00;AN=2;DP=448;Dels=0.00;FS=0.000;HaplotypeScore=22.2811;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.31;SB=-4.016e+03 GT:AD:DP:GQ:PL 1/1:0,445:448:99:9545,985,0 chrV 193912 . C A 9469.01 filter AC=2;AF=1.00;AN=2;DP=409;Dels=0.00;FS=0.000;HaplotypeScore=21.4823;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.15;SB=-4.154e+03 GT:AD:DP:GQ:PL 1/1:0,409:409:99:9469,953,0 chrV 194101 . C A 4479.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=17.3502;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.85;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4479,463,0 chrV 194166 . T G 4798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=206;Dels=0.00;FS=12.680;HaplotypeScore=9.6713;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.976;QD=23.29;ReadPosRankSum=2.390;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4798,496,0 chrV 194498 . C T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.38;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3688,370,0 chrV 194501 . C T 3672.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.40;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3672,387,0 chrV 194540 . T C 4182.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.6265;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.91;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4182,433,0 chrV 194625 . T A 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=1.711;QD=22.49;ReadPosRankSum=0.619;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3711,370,0 chrV 194646 . T G 2853 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=18.41;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2886,303,0 chrV 194686 . A G 1544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.400;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=76.8705;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;MQRankSum=-0.790;QD=12.35;ReadPosRankSum=1.704;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:1577,168,0 chrV 194707 . C T 1321 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=39.18;MQ0=0;QD=10.32;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1354,138,0 chrV 194719 . G A 1426 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=11.05;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1459,144,0 chrV 194739 . C T 1387 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1800;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=11.56;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1420,144,0 chrV 194881 . C T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.2764;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=24.97;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3770,379,0 chrV 195272 . G A 8889.01 filter AC=2;AF=1.00;AN=2;DP=390;Dels=0.00;FS=0.000;HaplotypeScore=24.9065;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.79;SB=-4.482e+03 GT:AD:DP:GQ:PL 1/1:0,389:390:99:8889,899,0 chrV 195341 . G A 10172.01 filter AC=2;AF=1.00;AN=2;DP=410;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=24.81;SB=-5.290e+03 GT:AD:DP:GQ:PL 1/1:0,406:410:99:10172,1019,0 chrV 195368 . C G 9710.01 filter AC=2;AF=1.00;AN=2;DP=457;Dels=0.00;FS=0.000;HaplotypeScore=9.1297;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=21.25;SB=-5.993e+03 GT:AD:DP:GQ:PL 1/1:0,452:457:99:9710,1003,0 chrV 195384 . G A 9718.01 filter AC=2;AF=1.00;AN=2;DP=462;Dels=0.00;FS=0.000;HaplotypeScore=16.8441;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.03;SB=-6.296e+03 GT:AD:DP:GQ:PL 1/1:0,460:462:99:9718,986,0 chrV 195425 . T C 8492.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=478;Dels=0.00;FS=3.762;HaplotypeScore=16.2788;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=1.261;QD=17.77;ReadPosRankSum=1.710;SB=-5.733e+03 GT:AD:DP:GQ:PL 1/1:1,477:478:99:8492,895,0 chrV 195440 . A G 8386.01 filter AC=2;AF=1.00;AN=2;DP=453;Dels=0.00;FS=0.000;HaplotypeScore=14.8046;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=18.51;SB=-5.076e+03 GT:AD:DP:GQ:PL 1/1:0,451:453:99:8386,868,0 chrV 195529 . A G 8188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=355;Dels=0.00;FS=2.552;HaplotypeScore=22.1153;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.294;QD=23.06;ReadPosRankSum=2.854;SB=-3.491e+03 GT:AD:DP:GQ:PL 1/1:3,348:355:99:8188,847,0 chrV 195746 . A G 6477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=264;Dels=0.00;FS=13.617;HaplotypeScore=12.1090;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=2.333;QD=24.53;ReadPosRankSum=3.334;SB=-3.182e+03 GT:AD:DP:GQ:PL 1/1:4,257:264:99:6477,676,0 chrV 195765 . A G 5944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=257;Dels=0.00;FS=7.082;HaplotypeScore=11.9678;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.950;QD=23.13;ReadPosRankSum=2.383;SB=-3.140e+03 GT:AD:DP:GQ:PL 1/1:2,255:257:99:5944,628,0 chrV 195830 . T G 5838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.295;DP=274;Dels=0.00;FS=9.076;HaplotypeScore=19.8540;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=2.001;QD=21.31;ReadPosRankSum=3.416;SB=-3.348e+03 GT:AD:DP:GQ:PL 1/1:4,269:274:99:5838,631,0 chrV 195975 . T C 6294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=283;Dels=0.00;FS=6.415;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.805;QD=22.24;ReadPosRankSum=2.345;SB=-3.714e+03 GT:AD:DP:GQ:PL 1/1:2,280:283:99:6294,649,0 chrV 196190 . A G 5627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=243;Dels=0.00;FS=3.021;HaplotypeScore=20.1693;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.462;QD=23.16;ReadPosRankSum=2.379;SB=-3.244e+03 GT:AD:DP:GQ:PL 1/1:2,240:243:99:5627,580,0 chrV 196271 . C T 5094.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=21.2846;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.69;SB=-2.946e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5094,514,0 chrV 196326 . A G 4382.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.7408;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=23.82;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4382,462,0 chrV 196352 . T C 3168 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=20.84;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3201,351,0 chrV 196355 . T C 3184 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=21.09;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3217,342,0 chrV 196385 . A G 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.146;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.3543;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=-0.284;QD=18.47;ReadPosRankSum=3.250;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:4,147:152:99:2841,306,0 chrV 196391 . G A 2817 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=20.56;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2850,291,0 chrV 196526 . C T 2085 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=24.24;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2118,219,0 chrV 196553 . C T 1232 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=18.39;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1265,156,0 chrV 196554 . T C 1220 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=18.21;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1253,156,0 chrV 196708 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=27.13;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1905,201,0 chrV 196794 . C T 1885 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=27.32;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1918,198,0 chrV 196832 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.9265;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=26.31;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2796,285,0 chrV 196983 . T C 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.629;QD=21.83;ReadPosRankSum=1.706;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2980,306,0 chrV 196986 . C T 3058 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=22.49;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3091,315,0 chrV 197102 . A T 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=130;Dels=0.00;FS=7.052;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-0.936;QD=19.75;ReadPosRankSum=2.393;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2601,264,0 chrV 197103 . T C 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=132;Dels=0.00;FS=5.848;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-1.592;QD=18.95;ReadPosRankSum=2.885;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:3,128:132:99:2535,267,0 chrV 197145 . G A 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.350;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.7983;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.944;QD=19.99;ReadPosRankSum=-0.012;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2932,271,0 chrV 197322 . A G 3485.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=23.87;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3485,366,0 chrV 197352 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=139;Dels=0.00;FS=3.586;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-1.075;QD=23.54;ReadPosRankSum=1.707;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:3272,337,0 chrV 197415 . A G 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.830;QD=23.63;ReadPosRankSum=1.685;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3473,375,0 chrV 197493 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.12;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4206,418,0 chrV 197751 . G A 3878.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.94;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3878,403,0 chrV 197916 . C A 3056 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0948;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.69;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3089,318,0 chrV 198077 . A G 3036 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=23.18;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3069,321,0 chrV 198082 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=24.11;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3239,322,0 chrV 198126 . G A 2957 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.0294;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.75;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2990,304,0 chrV 198538 . T C 1597 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.49;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1630,171,0 chrV 198629 . A G 608 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.32;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:66:641,66,0 chrV 198669 . G T 1317 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.11;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1350,144,0 chrV 198865 . A G 2372 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=26.07;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2405,249,0 chrV 198962 . G A 4139.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.7075;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.64;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4139,430,0 chrV 199099 . C T 4467.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.28;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4467,463,0 chrV 199140 . G A 4830.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.54;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4830,490,0 chrV 200053 . T C 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=150;Dels=0.00;FS=3.544;HaplotypeScore=11.1099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.426;QD=24.87;ReadPosRankSum=1.709;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,146:150:99:3730,385,0 chrV 200737 . C T 4212.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.68;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4212,427,0 chrV 200759 . T G 4004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=1.390;QD=24.72;ReadPosRankSum=1.689;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4004,421,0 chrV 200851 . G A 5265.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.2458;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.06;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5265,526,0 chrV 200908 . T C 5895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=247;Dels=0.00;FS=3.191;HaplotypeScore=9.5309;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.676;QD=23.87;ReadPosRankSum=1.676;SB=-3.214e+03 GT:AD:DP:GQ:PL 1/1:1,245:247:99:5895,622,0 chrV 201228 . A T 7762.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=18.2683;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.13;SB=-3.968e+03 GT:AD:DP:GQ:PL 1/1:0,297:297:99:7762,781,0 chrV 201468 . C T 8125.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=19.4815;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.11;SB=-4.363e+03 GT:AD:DP:GQ:PL 1/1:0,334:337:99:8125,817,0 chrV 201582 . T G 6329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=26.8683;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.499;QD=23.10;ReadPosRankSum=2.360;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:2,271:274:99:6329,673,0 chrV 201726 . G A 6944.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=25.9079;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.71;SB=-3.885e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:6944,700,0 chrV 201879 . C T 5091.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.2012;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.57;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,212:216:99:5091,544,0 chrV 201988 . T C 2167 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.35;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2200,231,0 chrV 202172 . T A 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.068;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.835;QD=24.72;ReadPosRankSum=2.407;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2901,300,0 chrV 202232 . G A 3848.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=28.09;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3848,382,0 chrV 202285 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.919;QD=25.77;ReadPosRankSum=1.601;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3401,354,0 chrV 202314 . T C 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=153;Dels=0.00;FS=2.783;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.213;QD=24.09;ReadPosRankSum=2.368;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:3686,382,0 chrV 202470 . C T 5475.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=16.8436;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.23;SB=-2.783e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5475,553,0 chrV 202512 . C T 5361.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.05;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5361,556,0 chrV 202835 . A G 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=166;Dels=0.00;FS=2.990;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.007;QD=23.75;ReadPosRankSum=2.360;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3943,406,0 chrV 203211 . A G 4170.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.42;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4170,433,0 chrV 203226 . T C 4038.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.79;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4038,435,0 chrV 203238 . C T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.45;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4461,454,0 chrV 203277 . T C 4265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=212;Dels=0.00;FS=3.584;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-0.198;QD=20.12;ReadPosRankSum=1.699;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:4265,451,0 chrV 203553 . A G 4147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.134;DP=171;Dels=0.00;FS=15.060;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.356;QD=24.25;ReadPosRankSum=4.151;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:6,165:171:99:4147,436,0 chrV 203839 . A G 4119.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4119,421,0 chrV 203996 . A G 4340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.631;QD=25.09;ReadPosRankSum=1.692;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4340,448,0 chrV 204261 . T C 6852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.702;DP=284;Dels=0.00;FS=1.861;HaplotypeScore=18.7497;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.080;QD=24.13;ReadPosRankSum=3.741;SB=-3.072e+03 GT:AD:DP:GQ:PL 1/1:5,278:284:99:6852,709,0 chrV 204510 . C T 4889.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=22.43;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4889,487,0 chrV 204525 . C T 4614.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.1679;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.66;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4614,463,0 chrV 205014 . G A 4918.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.6625;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=25.61;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4918,499,0 chrV 205045 . T C 5178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=216;Dels=0.00;FS=6.071;HaplotypeScore=8.6244;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=2.075;QD=23.97;ReadPosRankSum=2.968;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:3,213:216:99:5178,541,0 chrV 205086 . T G 4946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=202;Dels=0.00;FS=2.572;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.372;QD=24.49;ReadPosRankSum=2.935;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:3,197:202:99:4946,511,0 chrV 206003 . C T 5306.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=18.4334;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5306,550,0 chrV 206288 . T C 4245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=184;Dels=0.00;FS=3.354;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.697;QD=23.07;ReadPosRankSum=1.657;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4245,445,0 chrV 206666 . G T 4567.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.6540;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.16;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4567,466,0 chrV 206836 . G C 3757.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.4469;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.63;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,161:166:99:3757,391,0 chrV 207156 . A G 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;MQRankSum=-1.264;QD=25.26;ReadPosRankSum=1.701;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2837,294,0 chrV 207179 . C T 2292 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=36.11;MQ0=0;QD=22.47;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2325,237,0 chrV 207187 . A G 2001 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.10;MQ0=0;QD=23.54;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2034,210,0 chrV 207222 . C A 1814 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=0;QD=21.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1847,186,0 chrV 207241 . A C 1919 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=31.46;MQ0=0;MQRankSum=-0.930;QD=20.20;ReadPosRankSum=1.696;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1952,204,0 chrV 207276 . A G 2145 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=0;MQRankSum=-1.598;QD=20.83;ReadPosRankSum=1.698;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2178,228,0 chrV 207285 . A C 2278 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=0;MQRankSum=1.595;QD=22.55;ReadPosRankSum=1.698;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2311,237,0 chrV 207299 . T C 2132 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.566;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;MQRankSum=1.626;QD=21.76;ReadPosRankSum=0.389;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2165,222,0 chrV 207304 . C G 1993 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=0;QD=22.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2026,213,0 chrV 207322 . T C 1704 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=21.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1737,183,0 chrV 207328 . C T 1710 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=0;QD=21.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1743,177,0 chrV 207338 . T C 1037 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=14.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1070,135,0 chrV 207464 . T C 460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;MQRankSum=-0.578;QD=17.04;ReadPosRankSum=1.605;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:51:493,51,0 chrV 207479 . G A 626 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=18.97;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:66:659,66,0 chrV 207516 . A G 971 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=21.11;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1004,105,0 chrV 207565 . T C 976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=39.4490;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;MQRankSum=-1.733;QD=22.70;ReadPosRankSum=1.652;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:1009,105,0 chrV 207773 . T G 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=128;Dels=0.00;FS=2.591;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.630;QD=25.55;ReadPosRankSum=2.945;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:3271,342,0 chrV 207821 . G A 3472.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=25.34;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3472,378,0 chrV 207968 . A G 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.1960;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.940;QD=23.08;ReadPosRankSum=0.908;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4362,457,0 chrV 208040 . T C 3758.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.64;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3758,385,0 chrV 208304 . G A 1684 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=24.06;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1717,177,0 chrV 208343 . C T 1190 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=21.64;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1223,123,0 chrV 208366 . C A 1151 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=22.13;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1184,120,0 chrV 208385 . G A 1265 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=19.77;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1298,132,0 chrV 208450 . C T 1201 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.37;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1234,126,0 chrV 208688 . T C 2748 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.49;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2781,297,0 chrV 208703 . A G 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=3.595;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.335;QD=22.37;ReadPosRankSum=1.703;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2695,285,0 chrV 208850 . C G 4549.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.45;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4549,486,0 chrV 209424 . A G 4398.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4398,463,0 chrV 209836 . G A 7104.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=8.9000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=24.67;SB=-4.068e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:7104,715,0 chrV 209849 . T C 6531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=277;Dels=0.00;FS=6.054;HaplotypeScore=12.9065;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-1.544;QD=23.58;ReadPosRankSum=2.931;SB=-3.787e+03 GT:AD:DP:GQ:PL 1/1:3,272:277:99:6531,673,0 chrV 210140 . G T 4851.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.10;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4851,490,0 chrV 210179 . G C 4564.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4564,481,0 chrV 210347 . A G 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.1633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.353;QD=24.26;ReadPosRankSum=1.631;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3323,340,0 chrV 210480 . G T 2163 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.02;FS=0.000;HaplotypeScore=7.8382;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.42;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2196,231,0 chrV 210504 . G A 2341 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.41;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2374,240,0 chrV 210614 . C A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=20.4092;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.13;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3744,379,0 chrV 210770 . A C 4739.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=23.93;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4739,496,0 chrV 210777 . C T 4284.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=21.42;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4284,442,0 chrV 210793 . T C 4216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;MQRankSum=-0.951;QD=19.79;ReadPosRankSum=1.700;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4216,439,0 chrV 210833 . A G 4785.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=11.3900;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.53;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:4785,508,0 chrV 210930 . G T 6186.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=23.26;SB=-3.410e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:6186,643,0 chrV 210995 . G A 4432.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=20.42;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4432,489,0 chrV 210996 . A G 4482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;MQRankSum=-0.763;QD=20.56;ReadPosRankSum=1.684;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4482,486,0 chrV 211018 . C T 4592.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.9711;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=21.66;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4592,466,0 chrV 211091 . T C 6204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=261;Dels=0.00;FS=7.495;HaplotypeScore=18.9461;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.212;QD=23.77;ReadPosRankSum=2.421;SB=-2.952e+03 GT:AD:DP:GQ:PL 1/1:2,258:261:99:6204,655,0 chrV 211171 . T C 4506.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=24.62;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4506,466,0 chrV 211284 . G A 5222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.3164;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-0.962;QD=26.11;ReadPosRankSum=-0.980;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:1,197:200:99:5222,502,0 chrV 211340 . A G 4753.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.0692;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.88;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4753,513,0 chrV 211386 . C T 4244.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.0333;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=24.25;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:99:4244,424,0 chrV 211413 . G T 3708.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.83;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3708,376,0 chrV 211419 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.32;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3576,370,0 chrV 211559 . G A 4927.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=23.13;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4927,531,0 chrV 211741 . T G 4981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=225;Dels=0.00;FS=6.687;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.266;QD=22.14;ReadPosRankSum=2.406;SB=-2.858e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:4981,523,0 chrV 211760 . G A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=21.27;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4489,472,0 chrV 211770 . C A 4103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=192;Dels=0.00;FS=3.388;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=-1.155;QD=21.37;ReadPosRankSum=0.180;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4103,417,0 chrV 211987 . C G 2845 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.51;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2878,300,0 chrV 212255 . C A 2351 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=23.28;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2384,240,0 chrV 212373 . A C 2907 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=22.89;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2940,303,0 chrV 212393 . G A 2650 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=21.72;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2683,273,0 chrV 212430 . T C 2514 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=20.78;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2547,264,0 chrV 212442 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=85.0527;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;QD=17.54;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1910,201,0 chrV 212499 . C A 1904 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=18.31;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:1937,195,0 chrV 212506 . T C 1937 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=17.61;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1970,210,0 chrV 212585 . C A 2831 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=13.5563;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.20;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2864,291,0 chrV 212901 . A G 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1615;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.243;QD=21.11;ReadPosRankSum=1.712;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3609,373,0 chrV 213076 . C T 2527 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.54;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2560,273,0 chrV 213244 . G A 1893 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.01;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1926,198,0 chrV 213423 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=13.6889;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.07;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2770,277,0 chrV 213535 . A G 5135.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5135,532,0 chrV 213822 . G A 4308.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.54;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4308,427,0 chrV 213865 . T A 487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DP=180;Dels=0.00;FS=3.802;HaplotypeScore=5.3995;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;MQRankSum=1.424;QD=2.71;ReadPosRankSum=-0.212;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:32:520,32,0 chrV 213896 . T C 1600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=130;Dels=0.00;FS=9.086;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-0.274;QD=12.31;ReadPosRankSum=2.412;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:1633,171,0 chrV 214893 . C T 5715.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.5756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.40;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5715,574,0 chrV 216589 . C G 3841.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3841,403,0 chrV 217039 . T C 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=149;Dels=0.00;FS=6.412;HaplotypeScore=11.4952;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.739;QD=24.46;ReadPosRankSum=2.416;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3645,387,0 chrV 217102 . G T 3782.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.09;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3782,373,0 chrV 222207 . A G 4053.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=15.8688;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.27;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4053,418,0 chrV 223618 . A G 5614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=227;Dels=0.00;FS=9.090;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.753;QD=24.73;ReadPosRankSum=2.969;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:3,221:227:99:5614,583,0 chrV 223768 . A G 4622.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.77;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4622,484,0 chrV 224276 . A G 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=4.621;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.071;QD=24.99;ReadPosRankSum=1.712;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4274,451,0 chrV 225229 . C T 2610 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=22.31;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2643,279,0 chrV 225233 . G A 2562 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=23.08;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2595,264,0 chrV 225238 . G T 2385 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=23.16;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2418,258,0 chrV 225494 . G A 1148 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=22.51;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1181,129,0 chrV 225496 . A G 1166 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=22.86;SB=-3.601e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1199,126,0 chrV 225499 . T C 1149 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=0.686;QD=21.68;ReadPosRankSum=1.602;SB=-3.501e+01 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1182,129,0 chrV 225501 . G A 1234 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=22.85;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1267,129,0 chrV 225668 . T G 933 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=19.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:966,99,0 chrV 225774 . A G 212.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-0.787;QD=11.16;ReadPosRankSum=3.194;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:5,14:19:27:245,27,0 chrV 225778 . A G 137.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;MQRankSum=-1.741;QD=13.71;ReadPosRankSum=1.393;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:1,9:10:18:170,18,0 chrV 225827 . C T 1039 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1072,111,0 chrV 226491 . C T 3885.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.46;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3885,408,0 chrV 226500 . G A 4012.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.2965;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=23.74;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4012,400,0 chrV 226861 . C T 2595 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.18;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2628,261,0 chrV 227640 . T C 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=129;Dels=0.00;FS=3.863;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.363;QD=22.84;ReadPosRankSum=1.705;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2979,312,0 chrV 227899 . G A 2992 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3025,304,0 chrV 228104 . A G 2698 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2731,279,0 chrV 228468 . A G 2747 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5930;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=27.20;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2780,285,0 chrV 229119 . A G 4813.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.0569;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4813,499,0 chrV 229595 . A G 5245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=227;Dels=0.00;FS=3.771;HaplotypeScore=16.3452;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.217;QD=23.11;ReadPosRankSum=1.686;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:1,224:227:99:5245,547,0 chrV 229778 . C T 4017.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.19;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4017,420,0 chrV 230512 . A G 6015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.193;DP=280;Dels=0.00;FS=5.226;HaplotypeScore=18.1261;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.627;QD=21.48;ReadPosRankSum=3.392;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:4,275:280:99:6015,637,0 chrV 231027 . A T 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=140;Dels=0.00;FS=2.998;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.465;QD=22.96;ReadPosRankSum=2.415;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3247,331,0 chrV 231029 . A G 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.333;DP=141;Dels=0.00;FS=9.026;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-1.094;QD=22.57;ReadPosRankSum=3.308;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:4,136:141:99:3216,333,0 chrV 231589 . G T 4400.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.5150;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.66;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4400,442,0 chrV 231721 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.361;DP=139;Dels=0.00;FS=3.235;HaplotypeScore=7.1376;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.707;QD=23.74;ReadPosRankSum=1.333;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3300,320,0 chrV 232364 . G C 3167 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.96;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3200,336,0 chrV 234239 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.01;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3651,367,0 chrV 234299 . T C 2582 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2615,270,0 chrV 234408 . A G 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.295;QD=22.82;ReadPosRankSum=1.709;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3354,343,0 chrV 234626 . T C 4492.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=25.67;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4492,460,0 chrV 234669 . G T 2871 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.86;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2904,289,0 chrV 234749 . G A 3821.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3821,388,0 chrV 234931 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.9834;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.62;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2470,249,0 chrV 235302 . T C 4320.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.41;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4320,448,0 chrV 235505 . C T 2670 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.02;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2703,273,0 chrV 235773 . A G 3184 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.76;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3217,336,0 chrV 237481 . G C 2287 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.13;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2320,246,0 chrV 238313 . G A 2836 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=26.75;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2869,286,0 chrV 238917 . T A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9185;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3378,354,0 chrV 239206 . T C 2757 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2314;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2790,288,0 chrV 239875 . A G 3939.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=24.77;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3939,417,0 chrV 240029 . C G 2437 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.83;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2470,255,0 chrV 240035 . T C 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=120;Dels=0.00;FS=3.197;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.655;QD=19.69;ReadPosRankSum=1.674;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2396,246,0 chrV 240100 . T G 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=143;Dels=0.00;FS=9.695;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.340;QD=19.83;ReadPosRankSum=2.951;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:2868,306,0 chrV 240112 . G C 3375.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.36;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3375,351,0 chrV 240371 . G T 4806.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.2374;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.27;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4806,481,0 chrV 240446 . G A 6014.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.92;SB=-3.166e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:6014,598,0 chrV 240598 . C T 5948.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=13.7250;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.48;SB=-3.286e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5948,601,0 chrV 240731 . G A 7449.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=19.3461;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.75;SB=-3.684e+03 GT:AD:DP:GQ:PL 1/1:0,298:301:99:7449,748,0 chrV 241047 . A G 5920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.264;DP=284;Dels=0.00;FS=5.153;HaplotypeScore=16.4664;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-0.151;QD=20.85;ReadPosRankSum=3.387;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:4,279:284:99:5920,613,0 chrV 241059 . G A 5031.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=3.4752;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=19.35;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5031,526,0 chrV 241084 . G A 4759.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=4.4221;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=20.17;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:4759,475,0 chrV 241109 . G A 4508.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=19.35;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4508,463,0 chrV 241256 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=152;Dels=0.00;FS=5.604;HaplotypeScore=9.3913;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.604;QD=23.01;ReadPosRankSum=2.953;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:3,147:152:99:3498,375,0 chrV 241358 . G A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.82;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3361,337,0 chrV 241371 . A G 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.4654;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.492;QD=23.59;ReadPosRankSum=1.709;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3491,361,0 chrV 241688 . T A 888 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.66;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:96:921,96,0 chrV 241698 . C T 730 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=21.2632;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=25.17;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:75:763,75,0 chrV 241759 . C T 815 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=23.29;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,34:35:84:848,84,0 chrV 241799 . C A 652 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=22.48;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:69:685,69,0 chrV 241800 . C G 627 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=21.62;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,28:29:69:660,69,0 chrV 241849 . G A 266 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=15.65;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:30:299,30,0 chrV 241868 . T A 136.13 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=19.3302;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=9.08;SB=-1.501e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:18:169,18,0 chrV 241873 . T A 109.26 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=23.1962;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;QD=8.40;SB=-1.761e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:15:142,15,0 chrV 241980 . G A 3203 filter AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=27.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3236,322,0 chrV 242043 . A G 2943 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=26.51;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2976,301,0 chrV 242167 . G A 5607.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.3437;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=24.81;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5607,562,0 chrV 242244 . C T 5734.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=23.9759;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.89;SB=-3.425e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:5734,577,0 chrV 242286 . G T 6019.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=22.2313;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.79;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:0,250:253:99:6019,604,0 chrV 242361 . C T 8159.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=14.5325;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.58;SB=-3.526e+03 GT:AD:DP:GQ:PL 1/1:0,328:332:99:8159,841,0 chrV 242413 . T C 8064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=18.1820;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.300;QD=23.31;ReadPosRankSum=1.662;SB=-4.137e+03 GT:AD:DP:GQ:PL 1/1:1,345:346:99:8064,847,0 chrV 242456 . A G 6590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=306;Dels=0.00;FS=3.365;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;MQRankSum=0.351;QD=21.54;ReadPosRankSum=1.721;SB=-3.813e+03 GT:AD:DP:GQ:PL 1/1:1,305:306:99:6590,694,0 chrV 242461 . T A 6270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=0.189;QD=21.33;ReadPosRankSum=1.708;SB=-3.775e+03 GT:AD:DP:GQ:PL 1/1:1,293:294:99:6270,637,0 chrV 242472 . T C 5381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=282;Dels=0.00;FS=5.700;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=0.327;QD=19.08;ReadPosRankSum=2.947;SB=-3.216e+03 GT:AD:DP:GQ:PL 1/1:3,279:282:99:5381,588,0 chrV 242693 . G A 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=0.05;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:6:44,6,0 chrV 242752 . A G 5478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=265;Dels=0.00;FS=5.161;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=0.340;QD=20.67;ReadPosRankSum=3.428;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:4,260:265:99:5478,583,0 chrV 242945 . C T 4882.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.05;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4882,487,0 chrV 243107 . C T 4493.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.77;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4493,454,0 chrV 243157 . A C 5302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.931;QD=24.66;ReadPosRankSum=1.699;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:1,211:215:99:5302,556,0 chrV 243299 . T C 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.888;QD=23.99;ReadPosRankSum=1.714;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4726,487,0 chrV 243350 . A G 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.210;DP=175;Dels=0.00;FS=7.227;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.995;QD=20.01;ReadPosRankSum=2.393;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:3501,381,0 chrV 243372 . A G 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=194;Dels=0.00;FS=6.324;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=1.131;QD=21.84;ReadPosRankSum=2.398;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:2,188:194:99:4237,445,0 chrV 243452 . G A 4390.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.6488;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.09;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4390,445,0 chrV 243656 . C A 70.51 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=1;QD=2.52;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:1,27:28:12:103,12,0 chrV 243719 . G T 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=5.55;SB=-3.080e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:59,6,0 chrV 243816 . A G 145.13 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.78;MQ0=0;QD=6.91;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:18:178,18,0 chrV 243825 . T C 167.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.89;MQ0=0;MQRankSum=-1.617;QD=5.57;ReadPosRankSum=1.502;SB=-2.907e+01 GT:AD:DP:GQ:PL 1/1:1,29:30:21:200,21,0 chrV 243828 . G A 198.03 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=36.93;MQ0=0;QD=6.19;SB=-2.904e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:24:231,24,0 chrV 243885 . G A 954 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=41.80;MQ0=0;QD=13.83;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,68:69:99:987,105,0 chrV 243892 . A T 1098 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=15.04;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1131,120,0 chrV 243981 . G A 2657 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=27.68;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2690,268,0 chrV 244092 . A T 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=3.499;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=1.142;QD=23.39;ReadPosRankSum=1.683;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3298,339,0 chrV 244113 . G A 3180 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=20.52;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3213,327,0 chrV 244116 . T C 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.988;DP=163;Dels=0.00;FS=10.853;HaplotypeScore=3.2930;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=-0.824;QD=18.97;ReadPosRankSum=4.120;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:6,157:163:99:3125,321,0 chrV 244404 . T G 5051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=16.5114;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=1.036;QD=22.55;ReadPosRankSum=1.717;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:5051,529,0 chrV 244512 . G T 3825.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.6184;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.76;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3825,408,0 chrV 244596 . T C 4271.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.99;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4271,439,0 chrV 244650 . C T 3778.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.22;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3778,376,0 chrV 245593 . G C 4428.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.31;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4428,463,0 chrV 245855 . G C 5590.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.63;SB=-2.946e+03 GT:AD:DP:GQ:PL 1/1:0,223:227:99:5590,589,0 chrV 245951 . C G 5765.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=22.9484;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.02;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:0,234:240:99:5765,598,0 chrV 246077 . A G 5888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=239;Dels=0.00;FS=6.187;HaplotypeScore=17.6415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.655;QD=24.64;ReadPosRankSum=2.398;SB=-3.185e+03 GT:AD:DP:GQ:PL 1/1:2,236:239:99:5888,607,0 chrV 246143 . G A 4955.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.15;SB=-2.995e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4955,499,0 chrV 246194 . T C 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=229;Dels=0.00;FS=10.738;HaplotypeScore=4.6870;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=0.504;QD=17.66;ReadPosRankSum=2.820;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:3,226:229:99:4044,479,0 chrV 246195 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=231;Dels=0.00;FS=7.086;HaplotypeScore=6.5138;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.251;QD=17.46;ReadPosRankSum=2.012;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:2,228:231:99:4034,482,0 chrV 246282 . G A 6520.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=11.7405;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.08;SB=-3.643e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:6520,658,0 chrV 246498 . A C 4087.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.8273;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.35;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4087,421,0 chrV 246542 . C G 4365.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.34;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4365,457,0 chrV 246588 . T C 3474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=145;Dels=0.00;FS=7.112;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-1.034;QD=23.96;ReadPosRankSum=1.708;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3474,372,0 chrV 246604 . T C 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=115;Dels=0.00;FS=5.579;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.268;QD=22.95;ReadPosRankSum=1.701;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,111:115:99:2672,279,0 chrV 246716 . C T 1775 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.47;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1808,183,0 chrV 246845 . G C 2420 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=24.95;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2453,255,0 chrV 246872 . A T 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=108.5877;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=0.13;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:6:47,6,0 chrV 247147 . G A 4316.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.1536;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.71;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4316,453,0 chrV 247282 . T C 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=4.251;HaplotypeScore=10.6555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.388;QD=20.60;ReadPosRankSum=1.711;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3420,357,0 chrV 247354 . G A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.85;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3290,337,0 chrV 248286 . A G 5421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=219;Dels=0.00;FS=13.413;HaplotypeScore=14.6186;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.434;QD=24.75;ReadPosRankSum=3.421;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:4,215:219:99:5421,574,0 chrV 248691 . T G 2888 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=25.33;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2921,312,0 chrV 248822 . A G 2989 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=25.33;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3022,309,0 chrV 248843 . A G 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.019;QD=23.13;ReadPosRankSum=1.664;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2415,255,0 chrV 248941 . A G 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.478;QD=21.72;ReadPosRankSum=2.368;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2661,279,0 chrV 248998 . T C 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=122;Dels=0.00;FS=11.726;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.615;QD=22.98;ReadPosRankSum=2.369;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2836,297,0 chrV 249123 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=27.14;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2801,280,0 chrV 249376 . A G 3579.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.3511;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=25.20;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3579,370,0 chrV 249511 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=160;Dels=0.00;FS=3.441;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=1.689;QD=24.33;ReadPosRankSum=1.689;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3893,420,0 chrV 249613 . C T 2775 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;QD=21.35;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2808,300,0 chrV 249616 . T A 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.63;MQ0=0;MQRankSum=-1.732;QD=22.27;ReadPosRankSum=1.705;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2884,294,0 chrV 249629 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=21.17;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2574,267,0 chrV 249705 . C A 3221.02 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=26.19;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3254,336,0 chrV 249834 . T A 2921 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7297;MLEAC=2;MLEAF=1.00;MQ=44.99;MQ0=0;QD=24.75;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2954,306,0 chrV 249919 . G C 1204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.557;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=45.5102;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=1;MQRankSum=-0.866;QD=21.12;ReadPosRankSum=1.361;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1237,132,0 chrV 250528 . C A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=26.41;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3486,352,0 chrV 250573 . G A 3875.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=27.88;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3875,391,0 chrV 250605 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.913;QD=25.41;ReadPosRankSum=1.685;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3786,394,0 chrV 250625 . G A 4057.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=25.84;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4057,403,0 chrV 250852 . G T 4763.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=25.07;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4763,496,0 chrV 251006 . C G 3308.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.5628;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.87;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3308,348,0 chrV 251267 . C T 3369.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.12;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3369,349,0 chrV 251309 . G A 4135.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.85;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:4135,418,0 chrV 251651 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.25;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2567,258,0 chrV 251721 . G A 2962 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.76;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2995,301,0 chrV 251925 . T A 3801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=150;Dels=0.00;FS=6.653;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.303;QD=25.34;ReadPosRankSum=2.335;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3801,391,0 chrV 252072 . G A 3699.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.99;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3699,370,0 chrV 252103 . C A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.91;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3345,345,0 chrV 252647 . A C 3950.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3950,415,0 chrV 254274 . T A 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=168;Dels=0.00;FS=3.021;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.031;QD=22.64;ReadPosRankSum=2.362;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3804,399,0 chrV 254391 . G A 4562.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.2536;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.77;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4562,460,0 chrV 254944 . A C 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.437;QD=23.96;ReadPosRankSum=1.678;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:3172,339,0 chrV 255332 . C T 2568 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.38;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2601,261,0 chrV 255344 . G A 2756 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.04;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2789,279,0 chrV 255489 . G A 2622 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.50;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2655,270,0 chrV 256159 . T C 1809 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1842,189,0 chrV 256289 . A G 1087 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.65;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1120,117,0 chrV 256376 . T C 1769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.4743;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.098;QD=24.57;ReadPosRankSum=1.537;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1802,186,0 chrV 256810 . A G 5270.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.40;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5270,567,0 chrV 256999 . A G 5907.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.2991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-3.012e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5907,622,0 chrV 257857 . G T 3717.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3717,376,0 chrV 258508 . T C 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.366;QD=23.27;ReadPosRankSum=1.699;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2453,252,0 chrV 258544 . G A 2763 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2796,279,0 chrV 258666 . G A 3446.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3446,355,0 chrV 260054 . A G 3064 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.4848;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.43;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3097,324,0 chrV 260078 . T C 3607.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4007;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.71;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3607,373,0 chrV 260511 . C T 2683 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.36;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2716,271,0 chrV 260843 . C A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.2346;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.84;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3385,337,0 chrV 261193 . A T 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.050;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-1.046;QD=25.84;ReadPosRankSum=1.701;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2901,292,0 chrV 261299 . C T 1632 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.15;MQ0=0;QD=23.31;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1665,171,0 chrV 261315 . T C 1363 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.39;MQ0=0;QD=20.97;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1396,150,0 chrV 261333 . A T 1167 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;QD=19.78;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1200,120,0 chrV 261338 . T A 1183 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=19.39;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1216,126,0 chrV 261345 . A C 1242 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=19.11;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1275,132,0 chrV 261462 . T A 343 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=9.80;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:39:376,39,0 chrV 261787 . G A 3424.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.61;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3424,349,0 chrV 262042 . C T 4843.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.17;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4843,493,0 chrV 262066 . C T 4534.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.90;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4534,457,0 chrV 262212 . A G 6319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=261;Dels=0.00;FS=2.785;HaplotypeScore=16.0633;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.628;QD=24.21;ReadPosRankSum=2.412;SB=-2.840e+03 GT:AD:DP:GQ:PL 1/1:2,258:261:99:6319,649,0 chrV 262352 . G T 3468.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.2593;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.28;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3468,358,0 chrV 262462 . A T 3474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.631;DP=150;Dels=0.00;FS=2.572;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.967;QD=23.16;ReadPosRankSum=2.940;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:3474,363,0 chrV 262797 . T C 3774.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3774,394,0 chrV 263456 . C T 3765.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.53;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3765,393,0 chrV 263549 . T C 2399 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.29;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2432,252,0 chrV 263652 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=4.199;HaplotypeScore=10.7285;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.439;QD=24.16;ReadPosRankSum=1.659;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3431,352,0 chrV 265533 . T C 4377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.7455;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.264;QD=23.53;ReadPosRankSum=1.713;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4377,468,0 chrV 265623 . C T 4744.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.20;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4744,475,0 chrV 265690 . A G 4317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=16.1482;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.157;QD=22.14;ReadPosRankSum=2.412;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4317,457,0 chrV 265875 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.02;FS=0.000;HaplotypeScore=2.9197;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.72;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2031,213,0 chrV 265876 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.02;FS=0.000;HaplotypeScore=7.1292;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.07;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2109,219,0 chrV 265937 . T C 977 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.94;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1010,105,0 chrV 266125 . T C 798 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.00;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:87:831,87,0 chrV 266216 . A G 1190 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.87;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1223,129,0 chrV 266246 . C A 1082 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.3038;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.02;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1115,114,0 chrV 266308 . A C 1566 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.10;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1599,168,0 chrV 266991 . T C 6219.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=15.3303;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.18;SB=-3.322e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:6219,640,0 chrV 267318 . T C 4679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=200;Dels=0.00;FS=5.879;HaplotypeScore=17.0144;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.036;QD=23.40;ReadPosRankSum=2.913;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:3,194:200:99:4679,507,0 chrV 267673 . G A 5298.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.2795;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.99;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5298,529,0 chrV 267773 . A T 5528.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.83;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5528,574,0 chrV 268009 . T A 4195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.394;DP=190;Dels=0.00;FS=3.109;HaplotypeScore=18.0971;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.071;QD=22.08;ReadPosRankSum=1.441;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4195,439,0 chrV 268219 . G A 1205 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.75;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1238,126,0 chrV 268231 . C T 929 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=16.30;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:962,102,0 chrV 268451 . A C 2512 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.90;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2545,264,0 chrV 268713 . C T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3970,394,0 chrV 268771 . A T 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=11.3972;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;MQRankSum=0.733;QD=23.56;ReadPosRankSum=1.699;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2507,255,0 chrV 268978 . G T 2009 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.83;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2042,210,0 chrV 269034 . A C 2566 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=24.44;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2599,264,0 chrV 269057 . A G 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.5451;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=1.155;QD=20.96;ReadPosRankSum=1.508;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2297,240,0 chrV 269239 . T C 2064 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.68;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2097,219,0 chrV 269894 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.039;QD=24.27;ReadPosRankSum=1.680;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3261,337,0 chrV 269910 . G T 2833 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=22.48;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2866,297,0 chrV 269950 . T C 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=135;Dels=0.00;FS=2.756;HaplotypeScore=1.9681;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;MQRankSum=-0.665;QD=20.81;ReadPosRankSum=2.395;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2842,294,0 chrV 270049 . A T 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.02;FS=3.081;HaplotypeScore=34.3857;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-1.425;QD=23.79;ReadPosRankSum=1.704;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3030,307,0 chrV 270213 . A T 4048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.203;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;MQRankSum=0.979;QD=25.14;ReadPosRankSum=1.711;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:4048,409,0 chrV 270233 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.2994;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=21.53;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3315,345,0 chrV 270466 . C A 2270 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=18.16;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2303,237,0 chrV 270473 . T C 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=4.806;HaplotypeScore=2.7021;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=0.314;QD=18.13;ReadPosRankSum=1.705;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2335,246,0 chrV 270482 . A T 2235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=1.313;QD=18.02;ReadPosRankSum=1.564;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2268,228,0 chrV 271135 . T A 4360.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=22.71;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4360,439,0 chrV 271156 . G A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=21.59;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3800,382,0 chrV 271177 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.6851;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=21.50;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3547,363,0 chrV 271202 . T C 3288.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.0191;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.55;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3288,342,0 chrV 271319 . T C 2207 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=21.02;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2240,231,0 chrV 271332 . A G 1625 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;MQRankSum=-1.351;QD=17.86;ReadPosRankSum=1.694;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1658,195,0 chrV 271333 . T A 1673 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;QD=18.59;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1706,195,0 chrV 271334 . T C 1698 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;QD=18.87;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1731,195,0 chrV 271367 . G A 1325 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=16.99;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1358,141,0 chrV 271374 . G A 1236 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=17.41;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1269,132,0 chrV 271409 . G A 1696 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=21.47;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1729,174,0 chrV 271934 . T C 7220.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.81;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,291:291:99:7220,739,0 chrV 272025 . C T 3643.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1111;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.48;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3643,379,0 chrV 272169 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.990;QD=23.15;ReadPosRankSum=1.707;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,139:143:99:3310,345,0 chrV 272259 . T C 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-1.541;QD=24.79;ReadPosRankSum=1.684;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3620,379,0 chrV 272511 . C T 3409.01 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=22.43;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3409,343,0 chrV 272517 . T C 3020 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=161;Dels=0.00;FS=2.379;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-0.390;QD=18.76;ReadPosRankSum=2.667;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:3,157:161:99:3053,315,0 chrV 272521 . G A 3090 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=19.56;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3123,313,0 chrV 272655 . C A 4376.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4376,433,0 chrV 273175 . T A 3679.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3679,379,0 chrV 273721 . T A 4828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.274;DP=188;Dels=0.00;FS=9.145;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.045;QD=25.68;ReadPosRankSum=3.348;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:4,184:188:99:4828,487,0 chrV 276583 . G A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.94;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3376,343,0 chrV 276619 . G T 2876 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2909,309,0 chrV 276799 . A C 3831.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.65;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3831,403,0 chrV 280223 . G A 7433.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=20.6449;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.21;SB=-3.994e+03 GT:AD:DP:GQ:PL 1/1:0,305:307:99:7433,742,0 chrV 281134 . G A 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.9983;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.690;QD=25.21;ReadPosRankSum=1.228;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4159,418,0 chrV 283424 . T C 3154 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.8258;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.90;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3187,333,0 chrV 286762 . G A 5165.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5165,520,0 chrV 287715 . G A 2158 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2191,222,0 chrV 288745 . A G 3703.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.14;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3703,379,0 chrV 288900 . C G 4735.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4735,499,0 chrV 289034 . G A 4898.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.4560;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.74;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4898,496,0 chrV 289447 . A G 3809.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.26;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3809,394,0 chrV 289889 . G A 3089 filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=6;QD=22.55;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3122,318,0 chrV 290344 . A G 4500.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=185;Dels=0.00;FS=6.094;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=4;MQRankSum=1.379;QD=24.32;ReadPosRankSum=2.422;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:4,179:185:99:4500,469,0 chrV 294112 . A G 4545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=207;Dels=0.00;FS=6.040;HaplotypeScore=13.3486;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.498;QD=21.96;ReadPosRankSum=2.956;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:3,203:207:99:4545,472,0 chrV 294714 . T G 2302 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2335,246,0 chrV 294947 . C A 1814 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=27.91;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1847,183,0 chrV 295030 . G A 2307 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=26.22;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2340,234,0 chrV 298190 . A G 2286 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.28;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2319,243,0 chrV 298538 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.6034;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.24;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3272,337,0 chrV 298743 . A G 2523 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.36;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2556,264,0 chrV 298831 . A G 2954 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2987,309,0 chrV 300738 . G A 6745.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=25.3678;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.18;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:0,276:279:99:6745,726,0 chrV 301990 . T C 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.564;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=13.7558;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.698;QD=23.22;ReadPosRankSum=0.858;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2425,252,0 chrV 302655 . T C 4515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=181;Dels=0.00;FS=5.400;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.772;QD=24.94;ReadPosRankSum=2.928;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:4515,463,0 chrV 304139 . G T 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=3.174;HaplotypeScore=11.2985;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.663;QD=22.75;ReadPosRankSum=1.155;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3708,376,0 chrV 308135 . G A 3491.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.38;MQ0=0;QD=25.30;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3491,352,0 chrV 309349 . A G 4880.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.52;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4880,511,0 chrV 311316 . A G 7131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=291;Dels=0.00;FS=2.969;HaplotypeScore=18.5170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.794;QD=24.51;ReadPosRankSum=2.348;SB=-3.536e+03 GT:AD:DP:GQ:PL 1/1:2,287:291:99:7131,751,0 chrV 312465 . A G 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=127;Dels=0.00;FS=4.600;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.509;QD=24.15;ReadPosRankSum=1.676;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,123:127:99:3100,318,0 chrV 312677 . G A 5376.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.8956;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.89;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,212:216:99:5376,541,0 chrV 314251 . C T 4888.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.3524;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.28;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4888,505,0 chrV 315976 . T A 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=100;Dels=0.00;FS=3.010;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.386;QD=22.99;ReadPosRankSum=1.697;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2332,234,0 chrV 317740 . G T 4188.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.7482;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4188,427,0 chrV 321624 . G T 3919.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.41;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3919,394,0 chrV 322554 . G C 3024 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.44;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,124:129:99:3057,318,0 chrV 327363 . A C 5254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=220;Dels=0.00;FS=4.122;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.604;QD=23.88;ReadPosRankSum=1.700;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:1,216:220:99:5254,538,0 chrV 327450 . A G 3946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.828;QD=17.23;ReadPosRankSum=1.701;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,225:229:99:3946,417,0 chrV 327970 . G A 2533 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.22;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2566,255,0 chrV 328271 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.60;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2745,274,0 chrV 331977 . G A 4737.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.6424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.61;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4737,472,0 chrV 332072 . G C 3950.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.8613;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3950,412,0 chrV 332139 . G A 5541.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.51;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5541,553,0 chrV 332272 . C T 4529.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.48;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4529,460,0 chrV 332460 . C T 3540.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=25.29;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3540,358,0 chrV 332482 . G A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=24.74;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3291,328,0 chrV 332507 . C T 3189 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.62;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3222,325,0 chrV 332539 . C G 2888 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.74;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2921,309,0 chrV 333114 . A G 896 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.89;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:929,99,0 chrV 333164 . T C 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.252;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=17.9858;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.076;QD=19.17;ReadPosRankSum=2.446;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:7,74:82:99:1605,171,0 chrV 333251 . G A 3086 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=25.93;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3119,310,0 chrV 333273 . G T 2181 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.48;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2214,225,0 chrV 333575 . C T 5266.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=20.2497;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.30;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5266,564,0 chrV 333619 . C T 5796.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.66;SB=-3.315e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5796,583,0 chrV 333669 . C G 4749.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=24.48;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4749,484,0 chrV 333688 . A G 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.806;DP=172;Dels=0.00;FS=5.863;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=1.100;QD=23.22;ReadPosRankSum=2.959;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:3994,423,0 chrV 333779 . C T 4443.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.7702;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.06;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4443,477,0 chrV 334031 . A G 3955.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=16.3221;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.54;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3955,412,0 chrV 334132 . C T 6684.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=23.70;SB=-3.888e+03 GT:AD:DP:GQ:PL 1/1:0,280:282:99:6684,676,0 chrV 334139 . G A 5980.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=22.07;SB=-3.551e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:5980,622,0 chrV 334216 . C T 4882.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.4359;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.70;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4882,499,0 chrV 334274 . T G 6625.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=17.6342;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.00;SB=-3.078e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:6625,697,0 chrV 334331 . T C 8150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=18.1137;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.054;QD=24.11;ReadPosRankSum=1.701;SB=-3.924e+03 GT:AD:DP:GQ:PL 1/1:1,336:338:99:8150,847,0 chrV 334416 . G T 11111.01 filter AC=2;AF=1.00;AN=2;DP=427;Dels=0.00;FS=0.000;HaplotypeScore=33.1300;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=26.02;SB=-3.728e+03 GT:AD:DP:GQ:PL 1/1:0,425:427:99:11111,1130,0 chrV 334487 . G A 10212.01 filter AC=2;AF=1.00;AN=2;DP=404;Dels=0.00;FS=0.000;HaplotypeScore=32.1154;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.28;SB=-4.664e+03 GT:AD:DP:GQ:PL 1/1:0,403:404:99:10212,1034,0 chrV 334623 . G C 10912.01 filter AC=2;AF=1.00;AN=2;DP=479;Dels=0.00;FS=0.000;HaplotypeScore=27.2926;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=22.78;SB=-4.849e+03 GT:AD:DP:GQ:PL 1/1:0,472:479:99:10912,1133,0 chrV 334750 . C T 8669.01 PASS AC=2;AF=1.00;AN=2;DP=359;Dels=0.00;FS=0.000;HaplotypeScore=24.6493;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.15;SB=-4.633e+03 GT:AD:DP:GQ:PL 1/1:0,355:359:99:8669,904,0 chrV 334787 . A G 7426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=333;Dels=0.00;FS=0.000;HaplotypeScore=24.2351;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.273;QD=22.30;ReadPosRankSum=1.659;SB=-4.196e+03 GT:AD:DP:GQ:PL 1/1:1,331:333:99:7426,805,0 chrV 335417 . T G 6862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=12.0852;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.901;QD=24.25;ReadPosRankSum=2.162;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:2,280:283:99:6862,721,0 chrV 335604 . T C 6234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;DP=283;Dels=0.00;FS=12.386;HaplotypeScore=11.2632;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.633;QD=22.03;ReadPosRankSum=3.338;SB=-3.726e+03 GT:AD:DP:GQ:PL 1/1:4,279:283:99:6234,637,0 chrV 335632 . G A 7319.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=12.9811;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.52;SB=-4.111e+03 GT:AD:DP:GQ:PL 1/1:0,324:325:99:7319,739,0 chrV 335812 . T C 7064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=277;Dels=0.00;FS=2.991;HaplotypeScore=16.0566;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.350;QD=25.50;ReadPosRankSum=2.396;SB=-3.661e+03 GT:AD:DP:GQ:PL 1/1:2,275:277:99:7064,727,0 chrV 337672 . T C 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.9625;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.338;QD=17.72;ReadPosRankSum=0.972;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1486,138,0 chrV 343502 . C A 3093 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=13.5905;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.16;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3126,316,0 chrV 343588 . T G 3411.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.85;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3411,360,0 chrV 346515 . T A 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=170;Dels=0.00;FS=6.254;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.643;QD=26.96;ReadPosRankSum=2.392;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4583,466,0 chrV 346707 . C T 4784.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.0481;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.28;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4784,487,0 chrV 349236 . C T 4171.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.5266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4171,427,0 chrV 349582 . T C 7204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=18.7717;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-1.421;QD=23.85;ReadPosRankSum=1.721;SB=-3.628e+03 GT:AD:DP:GQ:PL 1/1:1,300:302:99:7204,733,0 chrV 349661 . C T 5859.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.83;SB=-3.198e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5859,586,0 chrV 349710 . G A 6792.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=16.7525;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.26;SB=-3.297e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:6792,688,0 chrV 350741 . C T 5834.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=15.7873;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.72;SB=-3.222e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5834,589,0 chrV 350876 . G A 6451.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=19.6792;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.30;SB=-3.462e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:6451,643,0 chrV 351472 . A G 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.436;QD=23.23;ReadPosRankSum=1.703;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2774,285,0 chrV 352394 . A G 4846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.0783;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.076;QD=23.41;ReadPosRankSum=1.681;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:1,204:207:99:4846,502,0 chrV 352574 . T A 3998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=4.607;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.355;QD=25.63;ReadPosRankSum=1.710;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3998,403,0 chrV 353583 . C A 2106 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2139,222,0 chrV 353654 . G A 3171 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3204,325,0 chrV 353854 . C A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.17;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3384,357,0 chrV 354761 . G A 3864.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=23.56;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3864,388,0 chrV 354793 . T G 4589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=188;Dels=0.00;FS=6.620;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-1.940;QD=24.41;ReadPosRankSum=2.397;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4589,475,0 chrV 355019 . T C 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=3.502;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=1.237;QD=22.16;ReadPosRankSum=1.650;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3723,376,0 chrV 355336 . C G 3342.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.2777;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.76;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3342,354,0 chrV 355397 . A G 4578.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.5265;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.97;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4578,495,0 chrV 356079 . G T 4233.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:4233,430,0 chrV 356220 . A G 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=140;Dels=0.00;FS=9.415;HaplotypeScore=11.3758;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.210;QD=25.34;ReadPosRankSum=2.950;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:4,136:140:99:3548,364,0 chrV 356363 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1394;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.93;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3196,322,0 chrV 356837 . A G 4111.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.7161;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.35;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4111,424,0 chrV 357876 . C T 2254 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.77;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2287,231,0 chrV 359292 . C T 4413.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.18;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4413,457,0 chrV 360247 . A G 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.866;QD=23.97;ReadPosRankSum=1.660;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2334,237,0 chrV 360409 . C A 947 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.33;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:980,99,0 chrV 360939 . T C 3779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.189;QD=24.38;ReadPosRankSum=1.709;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3779,394,0 chrV 360974 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.3534;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.562;QD=23.99;ReadPosRankSum=1.709;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3575,370,0 chrV 361243 . T C 4917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.589;QD=24.96;ReadPosRankSum=1.714;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4917,520,0 chrV 362559 . T C 3980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-0.721;QD=24.72;ReadPosRankSum=1.689;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3980,412,0 chrV 362609 . C T 5595.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.9414;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.22;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5595,577,0 chrV 362832 . C T 4687.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.2614;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.80;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4687,472,0 chrV 363002 . C T 3194 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.65;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3227,322,0 chrV 363470 . A G 2620 filter AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=22.77;MQ0=108;QD=12.02;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:48,170:218:99:2653,276,0 chrV 363833 . T C 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.886;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.9777;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=0.288;QD=22.21;ReadPosRankSum=2.036;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2409,267,0 chrV 364042 . C T 3767.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=24.30;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3767,379,0 chrV 364059 . T A 3798.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.74;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3798,388,0 chrV 364082 . C T 3506.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.19;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3506,369,0 chrV 364150 . C T 3192 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.6102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3225,322,0 chrV 365083 . G A 4610.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.3477;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4610,495,0 chrV 366285 . G A 5305.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.6283;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.50;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5305,532,0 chrV 366477 . G C 2410 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.11;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2443,255,0 chrV 367786 . G A 4316.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=7.3904;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4316,439,0 chrV 368184 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3207,328,0 chrV 368706 . A G 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.6387;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.666;QD=23.46;ReadPosRankSum=1.688;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3754,388,0 chrV 368771 . C T 3934.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.6648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3934,400,0 chrV 368857 . T G 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.1349;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.500;QD=24.30;ReadPosRankSum=1.709;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3670,384,0 chrV 369120 . C T 4289.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.4830;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.51;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4289,436,0 chrV 369257 . T C 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=157;Dels=0.00;FS=4.007;HaplotypeScore=14.2591;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.489;QD=23.34;ReadPosRankSum=1.710;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3665,384,0 chrV 369931 . C T 2330 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2363,243,0 chrV 370893 . A T 3449.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.2370;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.40;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3449,349,0 chrV 370904 . A G 3043 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.43;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3076,321,0 chrV 371216 . G A 3841.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.62;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3841,391,0 chrV 371457 . T G 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=124;Dels=0.00;FS=3.668;HaplotypeScore=12.1994;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.787;QD=21.19;ReadPosRankSum=1.675;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,120:124:99:2660,279,0 chrV 371620 . A G 3719.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=25.83;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3719,385,0 chrV 371849 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2037;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=19.64;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3254,328,0 chrV 371859 . C T 2742 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.02;FS=0.000;HaplotypeScore=4.6829;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=17.03;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2775,280,0 chrV 371903 . G A 2609 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6727;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=17.39;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2642,279,0 chrV 371929 . T C 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=147;Dels=0.00;FS=13.862;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.221;QD=18.83;ReadPosRankSum=2.399;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:2,144:147:99:2801,294,0 chrV 372057 . T C 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=7.533;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-1.243;QD=22.12;ReadPosRankSum=1.651;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1913,201,0 chrV 372134 . A G 1202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.597;QD=22.68;ReadPosRankSum=2.868;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:3,50:53:99:1235,129,0 chrV 372248 . T A 1445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-0.199;QD=23.69;ReadPosRankSum=1.619;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1478,147,0 chrV 372263 . A G 1338 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=22.30;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1371,141,0 chrV 372487 . T C 2880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=116;Dels=0.00;FS=5.913;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=0.763;QD=24.83;ReadPosRankSum=2.939;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:3,112:116:99:2913,300,0 chrV 372581 . G A 3885.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.73;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3885,400,0 chrV 372742 . A T 2753 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.53;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2786,288,0 chrV 373436 . G A 2851 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=27.68;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2884,289,0 chrV 374698 . G C 2992 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3025,321,0 chrV 374863 . T A 1941 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.41;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1974,198,0 chrV 375017 . C T 1413 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.4770;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.36;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1446,150,0 chrV 376468 . A C 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.576;QD=22.87;ReadPosRankSum=1.701;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2595,273,0 chrV 377190 . T C 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.723;DP=156;Dels=0.00;FS=6.051;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.103;QD=22.23;ReadPosRankSum=2.787;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3468,366,0 chrV 378036 . A C 4495.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4495,475,0 chrV 378586 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3250,328,0 chrV 379332 . C A 5799.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=16.7380;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.16;SB=-2.844e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5799,583,0 chrV 382369 . C T 561 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.16;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:63:594,63,0 chrV 383543 . T G 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=110;Dels=0.00;FS=3.049;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.286;QD=23.88;ReadPosRankSum=2.226;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2660,282,0 chrV 385060 . T C 2122 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.2524;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2155,231,0 chrV 386503 . G A 3469.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.32;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3469,349,0 chrV 386623 . G A 2779 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.55;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2812,282,0 chrV 388045 . T G 2114 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.78;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2147,219,0 chrV 388274 . T C 2771 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.9995;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.74;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2804,288,0 chrV 389531 . A G 5098.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=17.5023;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.28;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:5098,526,0 chrV 389576 . C T 4024.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=17.3152;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.63;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4024,435,0 chrV 389822 . C T 4671.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.79;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4671,481,0 chrV 389845 . C T 4537.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.4052;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.24;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4537,454,0 chrV 390437 . C T 1364 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1397,141,0 chrV 390625 . C T 3172 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.38;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3205,328,0 chrV 392305 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6329;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.87;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,135:139:99:3212,336,0 chrV 393365 . G C 3893.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3893,411,0 chrV 393496 . T A 5048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=197;Dels=0.00;FS=2.983;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.066;QD=25.62;ReadPosRankSum=2.350;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:5048,505,0 chrV 393768 . C T 2741 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2774,279,0 chrV 393855 . A G 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=120;Dels=0.00;FS=6.981;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.974;QD=24.58;ReadPosRankSum=2.347;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2983,309,0 chrV 394021 . C T 3090 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.19;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3123,316,0 chrV 394151 . C G 2709 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2742,285,0 chrV 394357 . A G 3556.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3556,378,0 chrV 394911 . G A 2765 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.04;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2798,291,0 chrV 395043 . C A 2598 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.3444;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.99;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2631,264,0 chrV 395447 . C T 5947.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=15.8053;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.52;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5947,604,0 chrV 397753 . T G 1744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.453;QD=26.83;ReadPosRankSum=1.679;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1777,183,0 chrV 398975 . T G 3167 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=17.5778;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3200,330,0 chrV 399140 . C T 3661.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.72;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3661,370,0 chrV 399487 . C T 4252.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.41;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4252,433,0 chrV 399921 . T C 6607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.100;DP=292;Dels=0.00;FS=5.099;HaplotypeScore=29.2632;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.666;QD=22.63;ReadPosRankSum=3.395;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:4,285:291:99:6607,700,0 chrV 400481 . T C 6135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=271;Dels=0.00;FS=3.473;HaplotypeScore=18.5515;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.240;QD=22.64;ReadPosRankSum=1.706;SB=-3.250e+03 GT:AD:DP:GQ:PL 1/1:1,266:271:99:6135,631,0 chrV 400856 . C T 6221.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=15.1517;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=21.38;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:0,290:291:99:6221,625,0 chrV 400882 . A G 6073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.400;DP=283;Dels=0.00;FS=8.690;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.446;QD=21.46;ReadPosRankSum=3.424;SB=-3.532e+03 GT:AD:DP:GQ:PL 1/1:4,279:283:99:6073,625,0 chrV 400915 . T C 6075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=288;Dels=0.00;FS=3.025;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.634;QD=21.09;ReadPosRankSum=1.684;SB=-3.683e+03 GT:AD:DP:GQ:PL 1/1:1,286:288:99:6075,646,0 chrV 401106 . G T 6113.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=13.6688;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.75;SB=-3.235e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:6113,613,0 chrV 401545 . A G 4636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=3.499;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.037;QD=24.66;ReadPosRankSum=1.714;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4636,484,0 chrV 402008 . A G 1527 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.88;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1560,159,0 chrV 402114 . C T 2238 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.33;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2271,231,0 chrV 403529 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=158;Dels=0.00;FS=5.934;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.140;QD=23.87;ReadPosRankSum=2.956;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3772,388,0 chrV 403557 . T C 4117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.6451;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.546;QD=21.90;ReadPosRankSum=1.677;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4117,435,0 chrV 404317 . T C 3670.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.14;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3670,382,0 chrV 404528 . A C 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.796;QD=16.81;ReadPosRankSum=1.670;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:1916,204,0 chrV 405145 . G A 4136.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4136,424,0 chrV 407065 . T C 2232 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2265,234,0 chrV 407664 . T C 5003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=3.245;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.058;QD=23.94;ReadPosRankSum=1.682;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:5003,517,0 chrV 407957 . G T 4357.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.5736;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.68;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4357,442,0 chrV 408376 . G A 4049.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.54;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4049,409,0 chrV 408422 . T C 4006.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.70;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4006,421,0 chrV 409170 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.240;QD=23.58;ReadPosRankSum=1.707;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3264,348,0 chrV 409510 . C T 3884.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.43;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3884,397,0 chrV 410293 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=24.67;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3141,313,0 chrV 410311 . C G 2810 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.66;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2843,297,0 chrV 410317 . G A 2957 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.82;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2990,303,0 chrV 410460 . T C 4545.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.1436;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=23.19;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4545,475,0 chrV 410473 . G A 4098.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.7282;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.68;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4098,441,0 chrV 410808 . G A 7580.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=23.5849;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.84;SB=-4.471e+03 GT:AD:DP:GQ:PL 1/1:0,317:318:99:7580,769,0 chrV 410863 . A G 7229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=331;Dels=0.00;FS=5.367;HaplotypeScore=15.1878;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.027;QD=21.84;ReadPosRankSum=2.942;SB=-3.457e+03 GT:AD:DP:GQ:PL 1/1:3,328:331:99:7229,751,0 chrV 410947 . G A 8382.01 filter AC=2;AF=1.00;AN=2;DP=361;Dels=0.00;FS=0.000;HaplotypeScore=24.8980;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.22;SB=-4.212e+03 GT:AD:DP:GQ:PL 1/1:0,360:361:99:8382,853,0 chrV 415310 . T C 4814.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.50;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4814,516,0 chrV 416157 . A G 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.556;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.077;QD=23.91;ReadPosRankSum=1.650;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3069,318,0 chrV 416792 . C T 2949 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.06;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2982,303,0 chrV 416841 . C T 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.8890;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.683;QD=23.71;ReadPosRankSum=0.854;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3391,337,0 chrV 416905 . T G 3039 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3072,327,0 chrV 417511 . G A 4663.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4663,469,0 chrV 418504 . A G 2812 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=25.11;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2845,294,0 chrV 418792 . G A 3905.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3905,394,0 chrV 419085 . C G 5442.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=18.5506;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.56;SB=-2.978e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:5442,556,0 chrV 419378 . T C 4277.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=24.16;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4277,439,0 chrV 419568 . G A 1911 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.02;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1944,198,0 chrV 419631 . T G 2095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.01;FS=6.193;HaplotypeScore=12.2141;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-0.240;QD=16.24;ReadPosRankSum=2.411;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2128,222,0 chrV 420292 . C T 6035.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.90;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6035,628,0 chrV 420596 . C A 4710.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.5008;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.53;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4710,475,0 chrV 420990 . G A 821 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,33:34:96:854,96,0 chrV 421040 . C T 1459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.532;QD=28.06;ReadPosRankSum=-1.666;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1492,150,0 chrV 421100 . C T 1571 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.18;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1604,165,0 chrV 421229 . C T 4290.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.15;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4290,436,0 chrV 422021 . C T 5133.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.9524;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.68;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5133,529,0 chrV 422183 . C T 5140.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.7880;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.02;SB=-2.853e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5140,526,0 chrV 422613 . G C 3650.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3650,382,0 chrV 423401 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.47;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3116,313,0 chrV 423827 . A G 3752.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.9456;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3752,402,0 chrV 424671 . T C 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.274;QD=24.25;ReadPosRankSum=1.703;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2992,309,0 chrV 425002 . G A 1570 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=23.09;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1603,162,0 chrV 425066 . A G 1497 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1530,162,0 chrV 425334 . A G 4418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.8038;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.398;QD=23.50;ReadPosRankSum=1.695;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4418,454,0 chrV 425833 . G C 2337 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.47;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2370,249,0 chrV 425936 . C T 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.550;QD=26.18;ReadPosRankSum=-1.650;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3325,334,0 chrV 426243 . A G 4334.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.30;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4334,457,0 chrV 426331 . C A 2960 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.93;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2993,306,0 chrV 426433 . A G 3595.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.15;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3595,381,0 chrV 426481 . C T 3819.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.15;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3819,385,0 chrV 426512 . G T 4049.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.5600;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.84;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4049,415,0 chrV 426940 . G T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=24.01;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3842,397,0 chrV 426961 . T C 3939.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.17;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3939,412,0 chrV 427627 . T A 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=220;Dels=0.00;FS=10.372;HaplotypeScore=17.8057;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.474;QD=21.48;ReadPosRankSum=2.383;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:4726,481,0 chrV 427710 . T C 4766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=3.358;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.329;QD=24.44;ReadPosRankSum=1.697;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4766,499,0 chrV 427920 . A G 3465.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2674;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.35;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3465,369,0 chrV 428227 . G A 4172.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.05;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:4172,465,0 chrV 428251 . T G 4460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=189;Dels=0.00;FS=2.677;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-1.046;QD=23.60;ReadPosRankSum=2.398;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4460,472,0 chrV 428507 . G A 4456.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.89;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4456,442,0 chrV 428593 . T C 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.438;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.947;QD=23.85;ReadPosRankSum=1.705;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:3133,327,0 chrV 428611 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=25.16;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3254,330,0 chrV 428644 . A G 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=3.286;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.093;QD=22.98;ReadPosRankSum=1.679;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3020,318,0 chrV 428860 . T C 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.025;QD=24.60;ReadPosRankSum=1.661;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3616,367,0 chrV 428948 . A G 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.210;QD=24.88;ReadPosRankSum=1.666;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3906,414,0 chrV 429094 . A G 2571 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2604,276,0 chrV 429408 . C T 4503.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.8565;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=27.13;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4503,454,0 chrV 429460 . A C 3866.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.13;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3866,403,0 chrV 429466 . C T 4116.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.37;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4116,406,0 chrV 429589 . A G 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.4473;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.757;QD=20.07;ReadPosRankSum=1.691;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3352,343,0 chrV 429823 . A T 3814.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.40;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3814,394,0 chrV 430009 . G A 4003.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=25.50;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4003,403,0 chrV 430033 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.18;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3708,385,0 chrV 430454 . A T 3133 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.0522;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.21;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3166,333,0 chrV 430574 . A G 1129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.108;DP=98;Dels=0.00;FS=1.805;HaplotypeScore=17.2614;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=0.992;QD=11.52;ReadPosRankSum=0.025;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:5,90:98:99:1162,113,0 chrV 430597 . A G 1439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=78;Dels=0.00;FS=3.067;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.157;QD=18.45;ReadPosRankSum=1.687;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1472,153,0 chrV 430620 . T G 1763 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.26;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1796,189,0 chrV 430652 . G A 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.210;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-1.701;QD=23.62;ReadPosRankSum=0.328;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2655,276,0 chrV 430822 . A G 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=127;Dels=0.00;FS=11.532;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-0.643;QD=26.51;ReadPosRankSum=2.945;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:3367,349,0 chrV 430837 . G A 3070 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=24.37;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3103,324,0 chrV 430899 . T C 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.0071;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.016;QD=24.55;ReadPosRankSum=1.703;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,120:124:99:3077,310,0 chrV 430927 . T A 3491.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=26.05;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3491,355,0 chrV 430967 . T C 2797 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.35;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2830,300,0 chrV 431050 . C A 2443 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.27;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2476,261,0 chrV 431114 . G A 3406.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=25.23;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3406,340,0 chrV 431224 . C T 3463.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=26.85;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3463,357,0 chrV 431347 . T C 3295.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=24.41;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3295,354,0 chrV 431454 . G T 2543 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=23.55;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2576,270,0 chrV 431836 . C T 802 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=14.8232;MLEAC=2;MLEAF=1.00;MQ=39.57;MQ0=0;QD=6.91;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:90:835,90,0 chrV 432587 . A G 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.637;QD=24.17;ReadPosRankSum=1.708;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3504,361,0 chrV 434623 . T C 1913 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=25.51;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1946,201,0 chrV 434733 . C A 889 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.578;DP=72;Dels=0.00;FS=41.800;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=23;MQRankSum=2.659;QD=12.35;ReadPosRankSum=-2.725;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:27,45:72:73:922,73,0 chrV 434939 . T C 2215 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.665;DP=114;Dels=0.00;FS=35.805;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=17;MQRankSum=4.629;QD=19.43;ReadPosRankSum=-0.214;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:27,87:114:99:2248,211,0 chrV 435863 . A T 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.384;DP=119;Dels=0.00;FS=8.728;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=-0.641;QD=24.71;ReadPosRankSum=3.384;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:4,115:119:99:2973,301,0 chrV 438230 . T A 4327.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.07;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4327,451,0 chrV 438514 . G C 2632 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.1936;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.06;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2665,282,0 chrV 438684 . C A 1323 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8907;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=18.90;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,66:70:99:1356,138,0 chrV 439255 . A G 4702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=195;Dels=0.00;FS=8.061;HaplotypeScore=11.0394;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.272;QD=24.11;ReadPosRankSum=2.336;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4702,504,0 chrV 439285 . C T 4433.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.90;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4433,445,0 chrV 441308 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.73;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2117,216,0 chrV 442211 . A G 5003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=18.5514;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.095;QD=22.33;ReadPosRankSum=1.685;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:5003,529,0 chrV 442543 . A G 5756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=239;Dels=0.00;FS=3.572;HaplotypeScore=12.2824;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.094;QD=24.08;ReadPosRankSum=1.703;SB=-2.886e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5756,589,0 chrV 442568 . T G 5261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.989;QD=23.91;ReadPosRankSum=1.716;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:5261,553,0 chrV 442769 . G A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.88;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3776,385,0 chrV 450386 . C T 3826.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8413;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.62;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,158:162:99:3826,400,0 chrV 454592 . A G 6940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=283;Dels=0.00;FS=3.680;HaplotypeScore=16.1915;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.953;QD=24.52;ReadPosRankSum=1.720;SB=-3.330e+03 GT:AD:DP:GQ:PL 1/1:1,279:283:99:6940,730,0 chrV 455676 . T C 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=162;Dels=0.00;FS=2.617;HaplotypeScore=15.8402;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.206;QD=24.12;ReadPosRankSum=2.419;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3908,406,0 chrV 462614 . A G 4490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=4.155;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.145;QD=25.22;ReadPosRankSum=1.713;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4490,463,0 chrV 462746 . T C 3197 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.26;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3230,331,0 chrV 463004 . C T 3128 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.97;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3161,325,0 chrV 463250 . G A 7122.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=24.1683;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.99;SB=-3.598e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:7122,724,0 chrV 464494 . G A 6893.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.62;SB=-3.538e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:6893,688,0 chrV 465077 . T A 3724.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.33;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3724,390,0 chrV 467553 . T C 6393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=270;Dels=0.00;FS=3.434;HaplotypeScore=14.9641;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.642;QD=23.68;ReadPosRankSum=1.681;SB=-3.390e+03 GT:AD:DP:GQ:PL 1/1:1,268:270:99:6393,661,0 chrV 468178 . A G 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=0.543;QD=21.21;ReadPosRankSum=1.698;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2196,228,0 chrV 468183 . C G 2111 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.90;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2144,222,0 chrV 468194 . T C 1982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.5017;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=1.524;QD=19.82;ReadPosRankSum=1.559;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2015,207,0 chrV 468269 . C T 2126 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.47;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2159,219,0 chrV 468307 . G T 3007 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3040,315,0 chrV 468390 . C T 5122.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.9585;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.16;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5122,520,0 chrV 468645 . T C 7219.01 PASS AC=2;AF=1.00;AN=2;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=19.0901;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.63;SB=-2.909e+03 GT:AD:DP:GQ:PL 1/1:0,348:350:99:7219,760,0 chrV 469150 . T G 4308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.233;QD=25.19;ReadPosRankSum=1.712;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4308,451,0 chrV 469424 . T C 2565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=3.048;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.136;QD=22.11;ReadPosRankSum=1.672;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2598,282,0 chrV 470796 . T C 3972.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.6793;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.36;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3972,414,0 chrV 471259 . T C 4252.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.208;QD=24.16;ReadPosRankSum=1.673;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4252,433,0 chrV 471299 . T A 3918.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.89;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3918,397,0 chrV 476809 . G A 4764.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4764,478,0 chrV 477753 . A G 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=151;Dels=0.00;FS=3.036;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.270;QD=23.72;ReadPosRankSum=2.400;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3581,375,0 chrV 480036 . A G 2425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=4.771;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.951;QD=23.54;ReadPosRankSum=1.698;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2458,258,0 chrV 480047 . G C 2284 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.17;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2317,240,0 chrV 480143 . C G 3413.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3413,357,0 chrV 480402 . T C 3568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=2.932;HaplotypeScore=9.7200;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=1.808;QD=25.86;ReadPosRankSum=2.414;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3568,370,0 chrV 480677 . A T 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.133;DP=163;Dels=0.00;FS=6.431;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.354;QD=22.12;ReadPosRankSum=2.389;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3606,378,0 chrV 480891 . G A 3657.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.59;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3657,387,0 chrV 481233 . A G 3717.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.2951;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.38;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3717,393,0 chrV 481268 . C A 3939.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.0394;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=23.73;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3939,411,0 chrV 481400 . T C 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=157;Dels=0.00;FS=6.447;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.712;QD=25.27;ReadPosRankSum=2.387;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3968,412,0 chrV 481448 . T C 4247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=174;Dels=0.00;FS=7.177;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.683;QD=24.41;ReadPosRankSum=2.421;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:4247,442,0 chrV 481570 . A G 4364.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.5558;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=25.23;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4364,454,0 chrV 481740 . T C 4024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=186;Dels=0.00;FS=7.735;HaplotypeScore=13.2172;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.061;QD=21.63;ReadPosRankSum=2.382;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:2,180:186:99:4024,421,0 chrV 481764 . T C 3764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.579;DP=186;Dels=0.00;FS=17.029;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=0.429;QD=20.24;ReadPosRankSum=3.806;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:5,181:186:99:3764,402,0 chrV 481769 . G A 4028.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.77;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4028,409,0 chrV 481967 . G A 5127.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.8964;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=25.01;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5127,544,0 chrV 482268 . C T 6876.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=21.6406;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.47;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:6876,691,0 chrV 482384 . G C 5453.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.91;SB=-2.995e+03 GT:AD:DP:GQ:PL 1/1:0,235:238:99:5453,583,0 chrV 482408 . A G 5234.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.01;FS=0.000;HaplotypeScore=9.0086;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.08;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5234,541,0 chrV 482513 . A T 8283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=21.2551;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=1.180;QD=24.36;ReadPosRankSum=1.712;SB=-4.428e+03 GT:AD:DP:GQ:PL 1/1:1,339:340:99:8283,838,0 chrV 482536 . G A 7612.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=9.4215;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.35;SB=-4.364e+03 GT:AD:DP:GQ:PL 1/1:0,324:326:99:7612,796,0 chrV 483030 . A G 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.6767;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.521;QD=23.99;ReadPosRankSum=0.239;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2984,309,0 chrV 483316 . C T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=26.21;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3434,352,0 chrV 483439 . C T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5503;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.13;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3446,349,0 chrV 483535 . A T 4310.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.6515;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.88;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4310,436,0 chrV 483550 . G A 4251.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.2438;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=20.54;SB=-2.891e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4251,427,0 chrV 483728 . C T 5567.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=17.3965;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.74;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5567,565,0 chrV 484002 . T C 4975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=230;Dels=0.00;FS=3.015;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.833;QD=21.63;ReadPosRankSum=2.428;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:2,225:230:99:4975,529,0 chrV 484306 . T A 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=4.308;HaplotypeScore=12.2317;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.571;QD=20.77;ReadPosRankSum=1.663;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3169,336,0 chrV 484412 . G C 2695 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.03;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2728,279,0 chrV 484537 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2920,295,0 chrV 484675 . G T 2660 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=25.83;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2693,273,0 chrV 484694 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.32;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2667,282,0 chrV 484787 . G A 4450.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.5466;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=25.14;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4450,445,0 chrV 484851 . T G 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.1224;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.596;QD=20.74;ReadPosRankSum=1.677;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2646,279,0 chrV 484860 . A G 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=3.656;HaplotypeScore=7.0656;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-0.437;QD=19.97;ReadPosRankSum=1.704;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2489,264,0 chrV 484910 . A G 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=134;Dels=0.00;FS=3.209;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.284;QD=20.01;ReadPosRankSum=1.706;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2715,282,0 chrV 484935 . A G 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.3663;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.928;QD=22.01;ReadPosRankSum=1.710;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3412,360,0 chrV 485053 . A G 3821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=157;Dels=0.00;FS=3.125;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=1.260;QD=24.34;ReadPosRankSum=1.687;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:1,153:157:99:3821,405,0 chrV 485264 . A G 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=3.307;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.114;QD=25.04;ReadPosRankSum=1.713;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4583,481,0 chrV 485288 . C G 4889.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=24.32;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4889,505,0 chrV 485312 . T C 4486.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.88;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4486,469,0 chrV 485333 . A G 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=195;Dels=0.00;FS=2.977;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=-0.551;QD=21.27;ReadPosRankSum=2.424;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4148,438,0 chrV 485396 . G A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.2310;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.68;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3789,385,0 chrV 485579 . C T 4192.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=23.55;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4192,433,0 chrV 485599 . T C 4348.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.38;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4348,448,0 chrV 485875 . G A 4447.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=26.16;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4447,448,0 chrV 485936 . C T 3977.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.25;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3977,426,0 chrV 485993 . T C 3642.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.7401;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.47;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3642,376,0 chrV 486157 . G A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.3033;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.58;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3662,370,0 chrV 486920 . G A 3080 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.8062;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.45;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3113,310,0 chrV 487526 . G A 4578.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.9085;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.01;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4578,466,0 chrV 487690 . C T 2867 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=24.09;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2900,289,0 chrV 488516 . A G 1798 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=23.05;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1831,192,0 chrV 488527 . T G 1614 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=22.11;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1647,168,0 chrV 488534 . A G 1413 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=21.41;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1446,150,0 chrV 488556 . G C 1168 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.14;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1201,126,0 chrV 488644 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.21;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1687,171,0 chrV 488650 . T C 1558 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.77;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1591,162,0 chrV 488666 . T C 1325 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.40;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1358,144,0 chrV 488835 . G A 1567 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=29.57;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1600,159,0 chrV 488899 . G A 2731 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.8881;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=27.59;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2764,279,0 chrV 488982 . C T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=26.27;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3861,391,0 chrV 489026 . A G 4182.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.50;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4182,438,0 chrV 489169 . C A 5839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=7.9969;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.563;QD=24.23;ReadPosRankSum=0.678;SB=-3.244e+03 GT:AD:DP:GQ:PL 1/1:1,239:241:99:5839,595,0 chrV 489262 . C G 5517.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=16.5510;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.48;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,231:235:99:5517,568,0 chrV 489427 . G A 3955.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.83;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3955,397,0 chrV 491806 . T C 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.971;QD=23.14;ReadPosRankSum=1.680;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3088,327,0 chrV 492129 . C T 1410 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.04;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1443,144,0 chrV 492146 . G A 1345 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.07;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1378,144,0 chrV 498534 . G A 2041 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.1199;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=26.51;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:2074,210,0 chrV 498570 . C A 1876 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=28.86;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1909,186,0 chrV 498949 . T C 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=118;Dels=0.00;FS=3.569;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.896;QD=16.84;ReadPosRankSum=1.702;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2020,225,0 chrV 499612 . T C 5189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=269;Dels=0.00;FS=16.033;HaplotypeScore=8.8670;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.562;QD=19.29;ReadPosRankSum=2.405;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:3,265:269:99:5189,502,0 chrV 499617 . A G 4743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.388;DP=265;Dels=0.00;FS=4.887;HaplotypeScore=9.5999;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.633;QD=17.90;ReadPosRankSum=3.408;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:4,260:265:99:4743,496,0 chrV 499745 . G A 4960.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.80;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4960,496,0 chrV 500063 . G T 4547.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.7477;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.93;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4547,463,0 chrV 500524 . C G 2377 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=26.41;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2410,249,0 chrV 500567 . G T 2032 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.8966;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=24.19;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2065,210,0 chrV 500606 . T A 2855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;DP=122;Dels=0.00;FS=2.429;HaplotypeScore=10.5831;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=2.063;QD=23.40;ReadPosRankSum=2.954;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:4,118:122:99:2888,297,0 chrV 500680 . C T 4677.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.9023;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4677,484,0 chrV 500783 . G T 3544.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=23.95;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3544,352,0 chrV 500797 . C T 2742 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=18.65;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2775,306,0 chrV 500798 . T C 2749 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=18.57;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2782,309,0 chrV 501338 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.61;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3269,328,0 chrV 501719 . A T 4029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=171;Dels=0.00;FS=4.201;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.436;QD=23.56;ReadPosRankSum=1.671;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4029,426,0 chrV 501764 . T C 5191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.294;QD=24.26;ReadPosRankSum=2.403;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,211:214:99:5191,535,0 chrV 501989 . T G 5201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=229;Dels=0.00;FS=2.583;HaplotypeScore=9.9270;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.302;QD=22.71;ReadPosRankSum=1.742;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:5201,544,0 chrV 502082 . C T 3763.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.6422;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.81;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3763,379,0 chrV 502911 . T C 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=148;Dels=0.00;FS=6.603;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.577;QD=20.57;ReadPosRankSum=2.399;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3078,321,0 chrV 502929 . T A 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.128;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-1.409;QD=18.94;ReadPosRankSum=1.617;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2874,303,0 chrV 502939 . T C 2979 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.4585;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=19.10;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3012,309,0 chrV 502995 . T A 4468.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.2706;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=24.28;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4468,451,0 chrV 503046 . C T 4302.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.9237;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.76;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:4302,433,0 chrV 503099 . T C 4143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.676;DP=186;Dels=0.00;FS=2.569;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.346;QD=22.27;ReadPosRankSum=2.885;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:3,180:185:99:4143,435,0 chrV 503231 . G C 5838.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=14.1161;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=24.74;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5838,610,0 chrV 503447 . G A 6488.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.77;SB=-3.656e+03 GT:AD:DP:GQ:PL 1/1:0,294:298:99:6488,658,0 chrV 503456 . C T 6332.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.46;SB=-3.893e+03 GT:AD:DP:GQ:PL 1/1:0,291:295:99:6332,637,0 chrV 503618 . T C 5982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=17.3103;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=1.426;QD=24.62;ReadPosRankSum=1.659;SB=-3.126e+03 GT:AD:DP:GQ:PL 1/1:1,238:243:99:5982,619,0 chrV 503711 . G A 5269.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.77;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5269,556,0 chrV 503840 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.75;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3590,384,0 chrV 503864 . T C 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=180;Dels=0.00;FS=4.998;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.225;QD=20.40;ReadPosRankSum=1.673;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:3672,379,0 chrV 503909 . T A 2687 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.9234;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=16.79;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2720,288,0 chrV 503928 . T C 2467 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=8.5116;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=16.56;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2500,255,0 chrV 503934 . A G 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.136;DP=149;Dels=0.00;FS=3.604;HaplotypeScore=13.2436;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=-0.284;QD=12.60;ReadPosRankSum=-0.037;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:7,139:149:99:1911,177,0 chrV 504013 . A G 4066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=4.461;HaplotypeScore=11.4047;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.599;QD=25.10;ReadPosRankSum=1.711;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4066,418,0 chrV 504050 . C T 4472.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=25.85;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4472,445,0 chrV 504112 . G A 4635.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=24.8140;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=24.39;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4635,469,0 chrV 504185 . G A 5383.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=24.69;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5383,535,0 chrV 504211 . A C 4548.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=22.74;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4548,460,0 chrV 504218 . A G 4383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.965;DP=204;Dels=0.00;FS=9.700;HaplotypeScore=6.5731;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-0.535;QD=21.49;ReadPosRankSum=2.915;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:3,199:204:99:4383,445,0 chrV 504280 . G C 3396.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.21;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3396,360,0 chrV 504324 . T C 2929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=169;Dels=0.00;FS=4.446;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.633;QD=17.33;ReadPosRankSum=1.711;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:2962,321,0 chrV 504333 . G A 2899 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.76;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:2932,300,0 chrV 504390 . G A 4130.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=19.67;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4130,421,0 chrV 504471 . T A 4747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.728;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=-1.364;QD=22.93;ReadPosRankSum=-1.715;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4747,478,0 chrV 504506 . A G 4834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=193;Dels=0.00;FS=4.726;HaplotypeScore=11.4885;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=0.206;QD=25.05;ReadPosRankSum=1.696;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4834,505,0 chrV 504710 . T C 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.158;DP=187;Dels=0.00;FS=10.823;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;MQRankSum=-1.732;QD=17.57;ReadPosRankSum=3.786;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:6,179:187:99:3285,342,0 chrV 504711 . A T 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.757;DP=186;Dels=0.00;FS=24.282;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;MQRankSum=-2.841;QD=18.01;ReadPosRankSum=5.680;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:12,174:186:99:3349,340,0 chrV 504723 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=18.60;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3572,358,0 chrV 504739 . T C 3533.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=17.58;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3533,364,0 chrV 504765 . C G 3344.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=16.47;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:3344,354,0 chrV 504934 . C T 4123.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=24.25;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4123,430,0 chrV 505198 . G A 3962.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.08;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3962,400,0 chrV 506069 . C T 7389.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=23.5510;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.22;SB=-3.488e+03 GT:AD:DP:GQ:PL 1/1:0,292:293:99:7389,751,0 chrV 506330 . T C 5924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.370;DP=252;Dels=0.00;FS=21.401;HaplotypeScore=15.1309;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.512;QD=23.51;ReadPosRankSum=3.384;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:4,246:252:99:5924,601,0 chrV 506405 . T C 5319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=234;Dels=0.00;FS=4.356;HaplotypeScore=12.8631;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-1.233;QD=22.73;ReadPosRankSum=1.656;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:1,229:234:99:5319,553,0 chrV 506534 . A G 4178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=173;Dels=0.00;FS=4.005;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.901;QD=24.15;ReadPosRankSum=1.712;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4178,444,0 chrV 506573 . T C 4382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.295;DP=182;Dels=0.00;FS=8.305;HaplotypeScore=16.2483;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.063;QD=24.08;ReadPosRankSum=3.353;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:4,176:182:99:4382,457,0 chrV 506669 . A G 4344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=1.013;QD=23.11;ReadPosRankSum=1.695;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4344,439,0 chrV 506678 . C T 4070.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.0890;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=20.15;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4070,429,0 chrV 507153 . C A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4819;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.99;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3310,334,0 chrV 507407 . C A 3191 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.56;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3224,348,0 chrV 507644 . G A 4961.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=18.5475;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.56;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4961,496,0 chrV 507906 . C T 4675.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=16.7315;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.48;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:4675,469,0 chrV 508179 . A G 4528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=180;Dels=0.00;FS=2.930;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.293;QD=25.16;ReadPosRankSum=2.409;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4528,475,0 chrV 508274 . T C 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;DP=165;Dels=0.00;FS=3.037;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-2.070;QD=23.36;ReadPosRankSum=2.374;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:2,160:165:99:3855,408,0 chrV 508304 . A G 3578.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.9845;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.09;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3578,381,0 chrV 508632 . C G 2468 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2501,261,0 chrV 508911 . A G 2952 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7967;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2985,318,0 chrV 509188 . G A 3901.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.08;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3901,394,0 chrV 509583 . A G 5620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=247;Dels=0.00;FS=2.945;HaplotypeScore=15.8605;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.294;QD=22.75;ReadPosRankSum=2.410;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:2,244:247:99:5620,589,0 chrV 509654 . G A 4669.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.32;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4669,466,0 chrV 509836 . C T 2849 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2882,291,0 chrV 509938 . C T 3284.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3284,345,0 chrV 510191 . G A 1145 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1178,120,0 chrV 511800 . T C 5186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=251;Dels=0.00;FS=4.971;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.276;QD=20.66;ReadPosRankSum=1.704;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:1,244:251:99:5186,555,0 chrV 511824 . C T 4920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.706;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=5.7249;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.598;QD=21.03;ReadPosRankSum=1.435;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,232:234:99:4920,511,0 chrV 512779 . C T 4938.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.84;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4938,508,0 chrV 513424 . A T 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.493;DP=145;Dels=0.00;FS=12.780;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.160;QD=23.25;ReadPosRankSum=2.952;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3371,348,0 chrV 514323 . G A 3808.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.22;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3808,382,0 chrV 514855 . A G 5213.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-2.839e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5213,538,0 chrV 514906 . G A 4433.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.8372;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4433,448,0 chrV 515086 . T G 2893 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2926,303,0 chrV 515785 . T C 3400.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.97;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3400,357,0 chrV 515797 . T C 3362.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=22.12;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3362,354,0 chrV 515827 . A G 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=156;Dels=0.00;FS=3.493;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.524;QD=21.14;ReadPosRankSum=1.709;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,151:156:99:3298,340,0 chrV 515950 . C T 4228.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.44;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4228,442,0 chrV 516091 . A G 5569.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=5.7739;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.53;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5569,586,0 chrV 516235 . A T 4869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.349;QD=23.99;ReadPosRankSum=2.413;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4869,487,0 chrV 516328 . C T 4047.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=17.2274;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.36;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4047,418,0 chrV 516427 . A G 4225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=176;Dels=0.00;FS=9.108;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.272;QD=24.01;ReadPosRankSum=2.394;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4225,453,0 chrV 516916 . G A 5242.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=17.6310;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.93;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:0,233:239:99:5242,553,0 chrV 516964 . T C 6321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=256;Dels=0.00;FS=2.712;HaplotypeScore=13.9865;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.225;QD=24.69;ReadPosRankSum=2.430;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:2,254:256:99:6321,664,0 chrV 517045 . A G 6084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=243;Dels=0.00;FS=9.590;HaplotypeScore=18.7635;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.399;QD=25.04;ReadPosRankSum=2.920;SB=-3.224e+03 GT:AD:DP:GQ:PL 1/1:3,236:243:99:6084,628,0 chrV 517529 . T C 1679 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;QD=15.13;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1712,180,0 chrV 517605 . A G 1775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=129;Dels=0.00;FS=10.195;HaplotypeScore=4.4436;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;MQRankSum=2.194;QD=13.76;ReadPosRankSum=2.410;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:2,123:129:99:1808,192,0 chrV 517606 . G C 1773 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.2322;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=13.64;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:1806,192,0 chrV 518374 . A G 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.242;QD=19.27;ReadPosRankSum=1.713;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3469,372,0 chrV 518390 . T C 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=187;Dels=0.00;FS=7.144;HaplotypeScore=11.4950;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.984;QD=20.22;ReadPosRankSum=2.410;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:3782,402,0 chrV 518464 . G A 4887.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4887,493,0 chrV 518749 . C T 4238.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.3654;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4238,427,0 chrV 518973 . A G 4382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.583;QD=23.19;ReadPosRankSum=1.620;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4382,457,0 chrV 519649 . C T 4887.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.61;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4887,511,0 chrV 519704 . C A 4250.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.4883;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.61;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4250,424,0 chrV 519742 . G A 4476.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.31;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4476,469,0 chrV 520026 . T C 6311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=258;Dels=0.00;FS=3.003;HaplotypeScore=13.5194;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.485;QD=24.46;ReadPosRankSum=2.411;SB=-3.176e+03 GT:AD:DP:GQ:PL 1/1:2,255:258:99:6311,658,0 chrV 520271 . G A 5243.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5243,547,0 chrV 520333 . T C 5211.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=231;Dels=0.00;FS=4.234;HaplotypeScore=9.5677;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.732;QD=22.56;ReadPosRankSum=1.702;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:1,227:231:99:5211,541,0 chrV 520666 . G A 2350 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=22.38;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2383,240,0 chrV 520669 . G A 2346 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=22.13;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2379,243,0 chrV 520673 . T A 2412 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=22.97;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2445,246,0 chrV 520795 . A G 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=0.36;SB=-9.177e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:6:45,6,0 chrV 520891 . A T 659 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=16.90;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:69:692,69,0 chrV 520915 . A T 436 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.21;MQ0=0;QD=8.90;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:48:469,48,0 chrV 521007 . T A 1922 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=21.84;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1955,192,0 chrV 521119 . G A 1986 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=25.79;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:2019,207,0 chrV 521308 . T C 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.315;QD=24.46;ReadPosRankSum=1.668;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2675,282,0 chrV 521398 . A G 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=7.979;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.900;QD=24.79;ReadPosRankSum=2.406;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2809,291,0 chrV 521557 . T A 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=119;Dels=0.00;FS=6.515;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.740;QD=24.46;ReadPosRankSum=2.366;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2944,309,0 chrV 522010 . C T 3807.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=24.09;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3807,385,0 chrV 522133 . A G 4269.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.85;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,175:179:99:4269,448,0 chrV 522469 . G A 6096.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.4272;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=24.58;SB=-3.411e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:6096,631,0 chrV 522683 . C A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=43.64;MQ0=0;QD=20.44;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3945,423,0 chrV 522685 . T C 3799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=194;Dels=0.00;FS=8.804;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=0;MQRankSum=-1.298;QD=19.58;ReadPosRankSum=2.398;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:2,190:194:99:3799,408,0 chrV 522702 . G A 2699 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.02;FS=0.000;HaplotypeScore=4.8294;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=0;QD=15.25;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2732,315,0 chrV 522704 . A T 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.266;DP=178;Dels=0.00;FS=1.871;HaplotypeScore=4.6214;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;MQRankSum=-0.414;QD=15.25;ReadPosRankSum=3.715;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:5,173:178:99:2748,315,0 chrV 522739 . A C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.01;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=-0.264;QD=18.48;ReadPosRankSum=1.693;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3308,351,0 chrV 522899 . C T 1451 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;QD=16.49;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1484,165,0 chrV 522900 . C A 1382 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;QD=15.70;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:4,82:88:99:1415,156,0 chrV 523179 . A G 1784 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=24.78;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1817,186,0 chrV 523260 . C A 3119 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=23.10;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3152,319,0 chrV 523266 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=23.78;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3306,337,0 chrV 523488 . A G 3852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=3.598;HaplotypeScore=15.8634;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.000;QD=24.38;ReadPosRankSum=1.688;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3852,402,0 chrV 523683 . T C 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=130;Dels=0.00;FS=8.286;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.172;QD=26.09;ReadPosRankSum=2.412;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:3392,346,0 chrV 523812 . C T 2751 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2784,288,0 chrV 523845 . C G 3148 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3181,330,0 chrV 523947 . T C 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.489;QD=24.12;ReadPosRankSum=1.702;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2807,294,0 chrV 524394 . G A 4118.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3930;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.11;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4118,415,0 chrV 524888 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.25;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3103,324,0 chrV 525025 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.79;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3760,382,0 chrV 525027 . G T 3614.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=19.54;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3614,370,0 chrV 525075 . G A 3962.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.81;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:3962,420,0 chrV 525282 . A G 4462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.732;DP=210;Dels=0.00;FS=7.915;HaplotypeScore=8.6354;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-1.184;QD=21.25;ReadPosRankSum=3.791;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:5,205:210:99:4462,466,0 chrV 525390 . T G 3713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=199;Dels=0.00;FS=2.903;HaplotypeScore=17.7492;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.320;QD=18.66;ReadPosRankSum=2.374;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:2,194:199:99:3713,396,0 chrV 525755 . A G 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.592;QD=22.11;ReadPosRankSum=1.601;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3516,369,0 chrV 525802 . G A 3435.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3435,352,0 chrV 526092 . A G 3410.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3410,363,0 chrV 526131 . A G 5226.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.53;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5226,541,0 chrV 526682 . G C 2715 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.4972;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.91;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2748,285,0 chrV 526712 . A T 1878 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.63;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1911,192,0 chrV 527192 . T C 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.365;QD=27.02;ReadPosRankSum=2.920;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3729,385,0 chrV 527435 . C T 3969.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6819;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.61;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3969,403,0 chrV 527504 . G A 2976 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.60;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3009,304,0 chrV 527771 . C T 3780.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.3186;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.07;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3780,385,0 chrV 529484 . G T 2389 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.9114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.97;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2422,246,0 chrV 529707 . T G 3747.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3747,399,0 chrV 530174 . T C 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=3.388;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.124;QD=23.50;ReadPosRankSum=1.711;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3995,423,0 chrV 530348 . C T 4344.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.97;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4344,462,0 chrV 530754 . G A 4493.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=23.65;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4493,460,0 chrV 530762 . G A 4507.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.72;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4507,457,0 chrV 530820 . T C 3824.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.36;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3824,403,0 chrV 531061 . C T 4421.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.5461;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.56;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4421,448,0 chrV 531187 . A G 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=180;Dels=0.00;FS=5.990;HaplotypeScore=12.3936;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.726;QD=22.49;ReadPosRankSum=2.961;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:4049,418,0 chrV 531723 . T A 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.959;QD=24.69;ReadPosRankSum=1.705;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3243,328,0 chrV 532002 . G A 2521 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.78;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2554,261,0 chrV 532191 . C T 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-0.736;QD=25.58;ReadPosRankSum=-0.380;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3735,355,0 chrV 532205 . T A 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=153;Dels=0.00;FS=2.674;HaplotypeScore=6.5125;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.634;QD=24.14;ReadPosRankSum=2.353;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3694,373,0 chrV 532386 . G A 4737.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.5801;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.80;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4737,475,0 chrV 532674 . G A 5155.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.02;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5155,514,0 chrV 532728 . T C 4692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=210;Dels=0.00;FS=7.803;HaplotypeScore=17.5817;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.915;QD=22.34;ReadPosRankSum=2.402;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:2,206:210:99:4692,493,0 chrV 532772 . A T 4015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=169;Dels=0.00;FS=3.002;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-2.101;QD=23.76;ReadPosRankSum=2.348;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:4015,415,0 chrV 533214 . C T 5018.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=24.01;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5018,523,0 chrV 533244 . C A 4809.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=25.18;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4809,484,0 chrV 533265 . G A 4845.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.59;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4845,487,0 chrV 533502 . T G 4847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=195;Dels=0.00;FS=2.861;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.485;QD=24.86;ReadPosRankSum=2.424;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4847,505,0 chrV 534290 . A G 3957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.584;QD=23.28;ReadPosRankSum=1.691;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3957,406,0 chrV 534723 . T C 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.661;DP=163;Dels=0.00;FS=9.357;HaplotypeScore=10.1271;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.772;QD=22.29;ReadPosRankSum=2.957;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3633,373,0 chrV 534777 . T C 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=15.4268;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.868;QD=21.83;ReadPosRankSum=2.188;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:3,142:146:99:3220,339,0 chrV 535092 . T C 2138 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.24;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2171,225,0 chrV 535431 . T A 4568.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4568,463,0 chrV 535583 . A G 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.467;QD=23.63;ReadPosRankSum=1.656;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4347,454,0 chrV 535647 . C T 4198.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0485;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.99;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4198,418,0 chrV 535681 . G A 4057.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.0736;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.59;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4057,406,0 chrV 535805 . G A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.7130;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.57;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3735,373,0 chrV 536075 . C T 2944 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.82;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2977,298,0 chrV 536084 . A G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.852;QD=21.59;ReadPosRankSum=1.704;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2688,282,0 chrV 537193 . G A 4115.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.25;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4115,412,0 chrV 537259 . T C 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.009;DP=135;Dels=0.00;FS=2.690;HaplotypeScore=6.0004;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.100;QD=23.90;ReadPosRankSum=2.249;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3260,318,0 chrV 537415 . G T 5327.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.37;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5327,550,0 chrV 537745 . A G 4517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=180;Dels=0.00;FS=6.442;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.212;QD=25.09;ReadPosRankSum=2.368;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4517,469,0 chrV 537801 . A C 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=143;Dels=0.00;FS=6.960;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.130;QD=23.83;ReadPosRankSum=2.363;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3407,352,0 chrV 537978 . G A 4487.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.39;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4487,451,0 chrV 538329 . A T 1297 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.598;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=9.2988;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.246;QD=22.36;ReadPosRankSum=2.458;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,55:58:99:1330,138,0 chrV 538371 . A T 173.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.713;QD=12.36;ReadPosRankSum=2.491;SB=-5.894e+01 GT:AD:DP:GQ:PL 1/1:3,11:14:21:206,21,0 chrV 538885 . G C 5137.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.1934;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=23.56;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,213:218:99:5137,523,0 chrV 538899 . T C 4935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.723;DP=228;Dels=0.00;FS=10.170;HaplotypeScore=5.8713;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=1.119;QD=21.64;ReadPosRankSum=2.925;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:3,225:228:99:4935,523,0 chrV 538976 . C T 4714.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.6646;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.55;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4714,481,0 chrV 539053 . G C 3954.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.7728;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3954,409,0 chrV 539207 . A T 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=173;Dels=0.00;FS=8.870;HaplotypeScore=12.8852;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-1.449;QD=22.33;ReadPosRankSum=3.318;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:4,169:173:99:3863,403,0 chrV 539462 . T G 3786.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.43;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3786,396,0 chrV 539655 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.6579;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=24.03;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3844,385,0 chrV 539659 . G T 3739.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.6145;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=22.52;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3739,373,0 chrV 540205 . T C 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=181;Dels=0.00;FS=2.815;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=0.848;QD=25.01;ReadPosRankSum=2.409;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4527,475,0 chrV 540352 . A G 3632.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.8821;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.28;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3632,378,0 chrV 540409 . C A 4490.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.66;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4490,454,0 chrV 540722 . T C 2857 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.06;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2890,297,0 chrV 540957 . C T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.09;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4334,436,0 chrV 541039 . G A 2887 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9114;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.28;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2920,295,0 chrV 541074 . C G 2933 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.9081;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.22;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2966,309,0 chrV 541157 . G C 4377.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.79;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4377,460,0 chrV 541279 . C A 3186 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=10.8547;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=25.69;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3219,322,0 chrV 541352 . C T 2488 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=23.70;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2521,252,0 chrV 541421 . C T 3001 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.26;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3034,321,0 chrV 541474 . T C 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=126;Dels=0.00;FS=3.233;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;MQRankSum=0.173;QD=16.96;ReadPosRankSum=1.703;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,119:126:99:2170,225,0 chrV 541487 . G A 1870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.866;DP=108;Dels=0.00;FS=3.010;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;MQRankSum=0.128;QD=17.31;ReadPosRankSum=-1.508;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1903,189,0 chrV 541518 . T C 421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=126;Dels=0.00;FS=2.963;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.20;MQ0=0;MQRankSum=0.290;QD=3.34;ReadPosRankSum=2.410;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:57:454,57,0 chrV 541537 . A G 1858 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=12.14;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:1891,207,0 chrV 541538 . T A 1936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;MQRankSum=-1.327;QD=12.57;ReadPosRankSum=1.710;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:1969,210,0 chrV 541549 . T A 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=174;Dels=0.00;FS=2.583;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;MQRankSum=-0.659;QD=14.01;ReadPosRankSum=2.937;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:2471,249,0 chrV 541579 . T G 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=194;Dels=0.00;FS=2.511;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;MQRankSum=-1.776;QD=16.23;ReadPosRankSum=2.964;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:4,190:194:99:3182,339,0 chrV 541650 . G A 4414.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=25.22;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4414,463,0 chrV 541859 . G C 4894.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=23.64;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4894,523,0 chrV 541873 . G A 5094.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=24.03;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5094,511,0 chrV 541972 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.0651;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=20.04;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3306,334,0 chrV 541980 . C T 3386.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=21.16;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3386,343,0 chrV 542049 . A G 4116.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=24.36;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4116,415,0 chrV 545025 . G T 2583 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.89;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2616,261,0 chrV 547317 . T C 6422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.654;DP=278;Dels=0.00;FS=18.088;HaplotypeScore=16.6514;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.909;QD=23.10;ReadPosRankSum=3.694;SB=-3.274e+03 GT:AD:DP:GQ:PL 1/1:5,273:278:99:6422,676,0 chrV 547434 . G A 5783.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=20.9925;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-3.021e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5783,577,0 chrV 547620 . T C 5277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.373;QD=25.13;ReadPosRankSum=1.616;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:5277,550,0 chrV 548061 . T C 3337.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=23.01;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3337,343,0 chrV 548133 . C T 3930.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.41;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3930,397,0 chrV 548298 . A G 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=3.680;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=0.530;QD=24.12;ReadPosRankSum=1.661;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2397,246,0 chrV 548318 . G A 1885 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=22.18;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1918,192,0 chrV 548325 . A G 1806 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=21.00;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1839,192,0 chrV 548345 . A G 1907 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.46;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:1940,204,0 chrV 548501 . T C 2231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=96;Dels=0.00;FS=8.844;HaplotypeScore=5.0748;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.347;QD=23.24;ReadPosRankSum=2.347;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2264,234,0 chrV 548562 . A T 2017 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=24.60;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2050,213,0 chrV 548672 . C T 3385.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.0766;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.84;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3385,343,0 chrV 548869 . A T 4876.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.38;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4876,514,0 chrV 549055 . A G 5092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.3630;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.566;QD=24.25;ReadPosRankSum=1.666;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:5092,538,0 chrV 549124 . A G 4459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=189;Dels=0.00;FS=2.599;HaplotypeScore=11.2639;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.890;QD=23.59;ReadPosRankSum=2.424;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4459,466,0 chrV 549289 . G A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.96;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3833,400,0 chrV 549370 . T C 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=4.449;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.370;QD=23.36;ReadPosRankSum=-0.311;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2766,288,0 chrV 549585 . C T 866 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.68;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,42:44:90:899,90,0 chrV 549631 . A G 970 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.05;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1003,108,0 chrV 549645 . T C 1089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.948;QD=20.55;ReadPosRankSum=1.667;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1122,117,0 chrV 549677 . A T 1166 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=17.67;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1199,120,0 chrV 549690 . A C 1070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=8.783;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=0.459;QD=15.74;ReadPosRankSum=1.630;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1103,117,0 chrV 549802 . A T 2040 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=26.84;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2073,210,0 chrV 549929 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=24.36;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2810,285,0 chrV 550011 . C T 3098 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=24.98;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3131,316,0 chrV 550177 . G T 2729 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.73;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2762,291,0 chrV 550210 . A G 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=122;Dels=0.00;FS=3.044;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-1.840;QD=22.14;ReadPosRankSum=2.409;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2734,288,0 chrV 550227 . C T 2927 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.2825;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=22.52;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2960,300,0 chrV 550261 . G T 2141 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=20.20;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2174,228,0 chrV 550284 . T C 1969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=107;Dels=0.00;FS=2.793;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;MQRankSum=-1.683;QD=18.40;ReadPosRankSum=2.334;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2002,207,0 chrV 550287 . G A 1934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.246;DP=108;Dels=0.00;FS=4.166;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;MQRankSum=-1.635;QD=17.91;ReadPosRankSum=1.570;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:1967,177,0 chrV 550341 . T C 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.268;DP=112;Dels=0.00;FS=4.364;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.093;QD=20.14;ReadPosRankSum=-1.330;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2289,216,0 chrV 550381 . A G 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=125;Dels=0.00;FS=6.058;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-2.589;QD=23.72;ReadPosRankSum=2.879;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2998,306,0 chrV 550566 . C T 2804 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.7287;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=23.37;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2837,283,0 chrV 550744 . G C 2888 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2921,309,0 chrV 550785 . T A 1989 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.50;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2022,204,0 chrV 550834 . C T 2563 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.7283;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.41;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2596,261,0 chrV 551369 . G A 4482.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=21.86;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4482,472,0 chrV 551411 . T C 3879.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=0.553;QD=20.52;ReadPosRankSum=1.640;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3879,411,0 chrV 551439 . A G 3725.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=18.08;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:3725,396,0 chrV 551444 . A C 4034.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=19.21;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4034,421,0 chrV 551815 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=2.998;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-1.604;QD=22.71;ReadPosRankSum=2.309;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3565,375,0 chrV 551830 . C T 4113.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.11;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4113,424,0 chrV 552374 . A G 3839.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.0790;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.99;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3839,400,0 chrV 552479 . C A 4240.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.2737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.34;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4240,418,0 chrV 552597 . C T 3827.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.19;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3827,385,0 chrV 552602 . A G 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=3.954;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.789;QD=21.05;ReadPosRankSum=1.712;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3578,370,0 chrV 552684 . T C 5008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.492;QD=23.08;ReadPosRankSum=1.716;SB=-2.970e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:5008,523,0 chrV 553016 . G A 4625.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.6446;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=24.87;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4625,469,0 chrV 553226 . T C 2042 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=23.74;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2075,216,0 chrV 553237 . G A 1986 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=23.93;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2019,207,0 chrV 553261 . T C 994 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;QD=22.09;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:99:1027,105,0 chrV 553262 . T C 1008 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=6.9598;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=0;QD=23.44;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1041,108,0 chrV 553466 . A G 2982 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=25.49;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:3015,321,0 chrV 553660 . T C 4867.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=19.9563;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.63;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4867,528,0 chrV 553849 . C T 4285.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.63;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4285,433,0 chrV 553933 . T C 3207 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.12;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3240,331,0 chrV 554060 . G T 2146 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=22.59;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2179,228,0 chrV 554139 . G T 689 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;QD=17.67;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:78:722,78,0 chrV 554157 . C T 601 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=16.69;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:66:634,66,0 chrV 554160 . G A 498 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=15.09;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:57:531,57,0 chrV 554162 . A G 455 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=14.68;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:54:488,54,0 chrV 554170 . G A 475 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=14.39;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:54:508,54,0 chrV 554189 . A G 367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.55;MQ0=0;MQRankSum=1.455;QD=12.23;ReadPosRankSum=2.286;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:2,28:30:42:400,42,0 chrV 554200 . C T 452 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.68;MQ0=0;QD=14.12;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:48:485,48,0 chrV 554219 . T C 504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=4.087;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=40.10;MQ0=0;MQRankSum=-0.296;QD=12.29;ReadPosRankSum=1.395;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:54:537,54,0 chrV 554237 . A G 636 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.65;MQ0=0;QD=12.98;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:69:669,69,0 chrV 554292 . C T 755 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=0;QD=9.56;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:81:788,81,0 chrV 554301 . T C 712 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=51.4883;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=0;QD=9.89;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:78:745,78,0 chrV 554319 . A G 694 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.70;MQ0=0;QD=5.83;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:78:727,78,0 chrV 554324 . A G 624 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.69;MQ0=0;QD=5.16;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:69:657,69,0 chrV 554330 . G A 633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=6.405;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.09;MQ0=0;MQRankSum=-1.703;QD=5.36;ReadPosRankSum=-0.969;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:69:666,69,0 chrV 554406 . T G 827 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;MQRankSum=-0.731;QD=7.07;ReadPosRankSum=2.940;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:3,113:117:87:860,87,0 chrV 554409 . G A 879 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=7.85;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:90:912,90,0 chrV 554414 . C T 886 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;QD=8.20;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:93:919,93,0 chrV 554416 . A G 843 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=31.25;MQ0=0;MQRankSum=-1.541;QD=7.66;ReadPosRankSum=1.414;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:96:876,96,0 chrV 554422 . C A 948 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8329;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;QD=6.77;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,137:140:99:981,99,0 chrV 554437 . C T 1647 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=35.67;MQ0=0;QD=10.56;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,156:156:99:1680,171,0 chrV 554500 . C A 4558.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;QD=21.50;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4558,483,0 chrV 554536 . A T 5690.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.6412;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=26.34;SB=-3.073e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5690,577,0 chrV 554683 . G A 4983.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=25.95;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4983,499,0 chrV 554720 . C T 4314.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=24.65;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4314,433,0 chrV 554734 . C T 4129.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=24.87;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4129,424,0 chrV 554819 . A T 1983 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.221;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=0.779;QD=20.66;ReadPosRankSum=1.664;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:2016,177,0 chrV 554822 . A C 1954 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=21.24;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1987,204,0 chrV 554823 . T C 1975 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=21.01;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2008,204,0 chrV 554883 . T C 2429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=3.531;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=0.286;QD=20.76;ReadPosRankSum=1.702;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:2462,255,0 chrV 554931 . T C 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.4959;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=1.128;QD=21.75;ReadPosRankSum=1.706;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2948,312,0 chrV 554949 . C T 3051 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=25.21;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3084,313,0 chrV 554977 . A G 2338 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.48;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2371,249,0 chrV 555084 . G A 4098.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9417;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=24.11;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4098,406,0 chrV 555089 . A T 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=5.416;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.995;QD=22.06;ReadPosRankSum=1.593;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3838,385,0 chrV 555117 . G A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.74;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3629,373,0 chrV 555177 . T A 2641 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.5991;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=25.15;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2674,276,0 chrV 555234 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.70;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3458,349,0 chrV 555415 . A T 1607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.477;QD=23.29;ReadPosRankSum=1.682;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1640,162,0 chrV 555535 . T C 1245 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1278,132,0 chrV 555788 . G C 2852 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.57;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2885,303,0 chrV 555914 . T C 4880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=194;Dels=0.00;FS=6.089;HaplotypeScore=17.4970;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.497;QD=25.15;ReadPosRankSum=2.933;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:4880,505,0 chrV 555951 . C T 5833.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.8363;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.76;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5833,595,0 chrV 556026 . G A 5555.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.2940;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.02;SB=-3.068e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5555,583,0 chrV 556205 . A C 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=187;Dels=0.00;FS=2.560;HaplotypeScore=14.2140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.071;QD=22.19;ReadPosRankSum=2.919;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:3,182:187:99:4149,421,0 chrV 556281 . G A 3687.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.63;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3687,373,0 chrV 556443 . C T 3168 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3201,319,0 chrV 556662 . C T 4009.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.6166;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4009,420,0 chrV 556734 . C T 4711.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=25.33;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4711,481,0 chrV 556791 . G A 5258.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=25.90;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5258,538,0 chrV 556815 . A G 5329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-0.392;QD=25.14;ReadPosRankSum=1.683;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:5329,553,0 chrV 557030 . G A 3067 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=20.86;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3100,316,0 chrV 557037 . T C 3036 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=20.38;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3069,318,0 chrV 557054 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=19.35;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2568,261,0 chrV 557076 . T C 2623 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.7054;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.34;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2656,279,0 chrV 557148 . A G 3728.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.37;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3728,388,0 chrV 557265 . G A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.72;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3258,328,0 chrV 557616 . C T 3690.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.7861;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.50;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3690,390,0 chrV 557877 . T C 4559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.787;QD=25.76;ReadPosRankSum=1.673;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4559,466,0 chrV 558228 . T C 3879.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=157;Dels=0.00;FS=2.952;HaplotypeScore=14.8268;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.260;QD=24.71;ReadPosRankSum=2.418;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3879,406,0 chrV 558366 . T A 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=161;Dels=0.00;FS=7.524;HaplotypeScore=12.6201;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.252;QD=19.40;ReadPosRankSum=1.824;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3156,325,0 chrV 558368 . G T 3080 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=2.6500;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=19.74;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3113,319,0 chrV 558441 . T A 3981.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.75;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3981,397,0 chrV 558549 . A G 3029 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.27;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3062,321,0 chrV 558633 . C T 3496.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=24.97;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3496,352,0 chrV 558993 . G A 5118.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5118,517,0 chrV 559099 . A G 5383.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=19.3546;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.52;SB=-3.081e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5383,574,0 chrV 559138 . T C 5382.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=14.6510;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.61;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5382,577,0 chrV 559376 . C T 4740.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=25.35;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4740,490,0 chrV 559384 . C T 4186.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=24.62;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4186,424,0 chrV 559405 . G A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.74;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3323,348,0 chrV 559558 . C T 3950.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.65;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3950,400,0 chrV 559696 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3505;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-0.615;QD=21.57;ReadPosRankSum=1.709;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3300,351,0 chrV 559831 . T C 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=146;Dels=0.00;FS=6.294;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;MQRankSum=0.918;QD=23.01;ReadPosRankSum=2.365;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3360,354,0 chrV 559837 . G A 3449.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=23.30;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3449,352,0 chrV 559859 . T C 3327.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.7229;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=21.33;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3327,343,0 chrV 559862 . T C 3191 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=20.46;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3224,331,0 chrV 560011 . A G 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.3183;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.568;QD=22.77;ReadPosRankSum=1.678;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2948,303,0 chrV 560026 . T C 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=132;Dels=0.00;FS=3.624;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.416;QD=22.17;ReadPosRankSum=1.678;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,128:132:99:2960,303,0 chrV 560290 . A C 3293.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.03;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3293,348,0 chrV 560376 . T C 2657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=3.226;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.665;QD=25.80;ReadPosRankSum=1.698;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2690,276,0 chrV 560680 . T C 3852.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=23.49;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3852,406,0 chrV 560686 . A G 3660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.6166;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=-0.032;QD=22.73;ReadPosRankSum=1.711;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3660,387,0 chrV 560715 . A G 2054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.455;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9881;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=-1.610;QD=12.76;ReadPosRankSum=4.321;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:7,153:161:99:2087,275,0 chrV 560716 . G A 2075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.717;DP=160;Dels=0.00;FS=4.350;HaplotypeScore=6.5202;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;MQRankSum=-0.039;QD=12.97;ReadPosRankSum=3.413;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:5,155:160:99:2108,275,0 chrV 560810 . A C 4055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.5458;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.417;QD=23.04;ReadPosRankSum=2.017;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4055,432,0 chrV 560836 . C T 4078.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.1846;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=24.42;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4078,418,0 chrV 561097 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;QD=24.58;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2934,295,0 chrV 561145 . C T 1420 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;QD=16.90;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1453,153,0 chrV 561154 . G A 1313 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.28;MQ0=0;QD=15.09;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1346,144,0 chrV 561160 . C T 958 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=11.97;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:991,114,0 chrV 561163 . A G 963 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=0;QD=11.60;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:996,108,0 chrV 561166 . G A 1039 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=11.94;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1072,114,0 chrV 561193 . A G 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=0;MQRankSum=0.568;QD=11.40;ReadPosRankSum=1.704;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,121:122:99:1424,153,0 chrV 561211 . G A 1464 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.86;MQ0=0;QD=12.84;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1497,156,0 chrV 561220 . A G 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.86;MQ0=0;MQRankSum=-0.160;QD=12.17;ReadPosRankSum=1.703;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1481,153,0 chrV 561227 . T C 1460 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=31.01;MQ0=0;QD=12.27;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1493,156,0 chrV 561269 . G A 971 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=15.66;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1004,102,0 chrV 561292 . C G 841 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.24;MQ0=0;QD=16.49;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:874,93,0 chrV 561299 . C T 817 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=15.71;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:87:850,87,0 chrV 561309 . T C 702 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=15.26;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:78:735,78,0 chrV 561353 . C T 502 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.97;MQ0=0;QD=15.21;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:63:535,63,0 chrV 561355 . C T 499 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.97;MQ0=0;QD=15.12;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:63:532,63,0 chrV 561364 . T A 549 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.38;MQ0=0;QD=13.07;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:69:582,69,0 chrV 561373 . T C 695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=7.597;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.71;MQ0=0;MQRankSum=-1.732;QD=15.11;ReadPosRankSum=1.657;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:87:728,87,0 chrV 561379 . C T 646 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=13.46;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:84:679,84,0 chrV 561430 . A T 996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=0;MQRankSum=0.970;QD=19.92;ReadPosRankSum=1.663;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1029,108,0 chrV 561461 . A G 582 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=19.40;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:66:615,66,0 chrV 561500 . A G 47.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=11.99;SB=-5.021e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:80,9,0 chrV 561502 . C T 50.97 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=12.74;SB=-5.121e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:83,9,0 chrV 561524 . T A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=4.01;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrV 561529 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=4.01;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrV 561538 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrV 561541 . C G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrV 561545 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrV 561555 . A C 82.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=16.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:115,15,0 chrV 561569 . C T 120.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=0;QD=17.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:18:153,18,0 chrV 561578 . C T 142.06 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=12.91;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:175,21,0 chrV 561590 . G A 329 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;QD=21.93;SB=-9.200e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:39:362,39,0 chrV 561678 . G A 488 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=19.52;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:54:521,54,0 chrV 561690 . G A 358 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.66;MQ0=0;QD=15.57;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:42:391,42,0 chrV 561692 . T A 352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;MQRankSum=0.867;QD=14.67;ReadPosRankSum=1.589;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:42:385,42,0 chrV 561717 . C T 369 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;QD=14.76;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:42:402,42,0 chrV 561736 . G A 330 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=10.31;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:36:363,36,0 chrV 561746 . G A 379 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=11.48;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:42:412,42,0 chrV 561766 . A G 429 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.13;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:48:462,48,0 chrV 561802 . C A 533 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=8.20;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:57:566,57,0 chrV 561809 . T C 551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;MQRankSum=1.347;QD=7.65;ReadPosRankSum=1.684;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:63:584,63,0 chrV 561858 . C T 1326 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;QD=17.00;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1359,144,0 chrV 561877 . G A 1729 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;QD=19.43;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1762,183,0 chrV 561906 . C A 2043 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=21.73;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2076,213,0 chrV 561915 . A G 2064 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=20.04;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2097,228,0 chrV 562072 . T C 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=0.401;QD=24.22;ReadPosRankSum=1.690;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3996,420,0 chrV 562097 . T C 3944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=167;Dels=0.00;FS=2.979;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=-0.618;QD=23.62;ReadPosRankSum=2.420;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:2,163:167:99:3944,417,0 chrV 562113 . C A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=23.49;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4204,427,0 chrV 562155 . C T 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=1.673;QD=21.94;ReadPosRankSum=-0.010;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3905,394,0 chrV 562173 . T G 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=163;Dels=0.00;FS=2.951;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=0.671;QD=22.48;ReadPosRankSum=2.419;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3665,382,0 chrV 562264 . A G 4522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.9957;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-1.205;QD=24.44;ReadPosRankSum=1.676;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4522,469,0 chrV 562315 . T C 4053.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=22.27;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4053,429,0 chrV 562359 . C T 4329.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=20.8118;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=23.79;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4329,442,0 chrV 562436 . C A 4021.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=20.73;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4021,400,0 chrV 562473 . A G 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=184;Dels=0.00;FS=7.002;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.369;QD=19.86;ReadPosRankSum=2.423;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:3655,370,0 chrV 562518 . A G 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=179;Dels=0.00;FS=7.728;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=0.437;QD=21.20;ReadPosRankSum=2.422;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:2,175:179:99:3795,402,0 chrV 562559 . C T 4436.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=21.22;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4436,448,0 chrV 562570 . A G 4346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=203;Dels=0.00;FS=3.789;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=0.371;QD=21.41;ReadPosRankSum=1.663;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4346,442,0 chrV 562582 . A G 4411.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=20.91;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4411,460,0 chrV 562610 . C T 4648.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.3384;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=20.84;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4648,484,0 chrV 562667 . C T 4377.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=21.35;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4377,436,0 chrV 562683 . G A 4254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=0.429;QD=21.06;ReadPosRankSum=0.343;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4254,430,0 chrV 562846 . A G 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=168;Dels=0.00;FS=2.745;HaplotypeScore=9.0934;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;MQRankSum=0.051;QD=21.66;ReadPosRankSum=2.406;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3639,390,0 chrV 562873 . T A 3182 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.04;FS=0.000;HaplotypeScore=6.6001;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=22.41;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3215,325,0 chrV 562888 . G A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=23.10;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3372,345,0 chrV 562916 . G C 3004 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=21.77;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3037,310,0 chrV 563000 . G A 2824 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=22.77;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2857,291,0 chrV 563005 . A G 2644 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=21.15;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2677,288,0 chrV 563017 . A C 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=2.730;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.67;MQ0=0;MQRankSum=-1.352;QD=22.03;ReadPosRankSum=2.409;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2699,279,0 chrV 563018 . T C 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=4.260;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;MQRankSum=1.241;QD=22.18;ReadPosRankSum=1.703;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2695,282,0 chrV 563066 . A G 1605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;MQRankSum=-1.069;QD=17.07;ReadPosRankSum=1.695;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1638,174,0 chrV 563074 . G A 1751 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;QD=18.83;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1784,189,0 chrV 563104 . A G 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;MQRankSum=-1.100;QD=21.00;ReadPosRankSum=1.702;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2448,261,0 chrV 563174 . A G 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=132;Dels=0.00;FS=6.601;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=0.848;QD=25.19;ReadPosRankSum=2.375;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3325,345,0 chrV 563249 . T G 1932 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=63.2561;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=23.28;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1965,213,0 chrV 563275 . A C 1049 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=19.79;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1082,117,0 chrV 563299 . T A 823 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=39.44;MQ0=0;QD=9.68;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:90:856,90,0 chrV 563318 . T C 490 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;QD=6.45;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:57:523,57,0 chrV 563320 . A G 534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;MQRankSum=0.729;QD=7.03;ReadPosRankSum=1.687;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:60:567,60,0 chrV 563347 . A G 957 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;QD=11.00;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:990,105,0 chrV 563414 . C T 1770 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;QD=18.63;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1803,183,0 chrV 563421 . T A 1779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=107;Dels=0.00;FS=8.838;HaplotypeScore=89.8853;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;MQRankSum=-0.472;QD=16.63;ReadPosRankSum=2.358;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:1812,186,0 chrV 563452 . T C 1636 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=16.36;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1669,174,0 chrV 563474 . T G 1240 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;QD=14.25;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1273,135,0 chrV 563507 . C T 796 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=13.27;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:90:829,90,0 chrV 563513 . A G 780 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.90;MQ0=0;QD=14.72;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:93:813,93,0 chrV 563545 . G T 1435 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=19.39;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1468,156,0 chrV 563565 . G A 1571 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=19.64;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1604,168,0 chrV 563580 . G T 1767 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=19.42;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1800,192,0 chrV 563607 . T C 1813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.193;DP=113;Dels=0.00;FS=2.414;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;MQRankSum=-1.779;QD=16.04;ReadPosRankSum=3.302;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:4,109:113:99:1846,207,0 chrV 563620 . T A 1685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.353;QD=17.19;ReadPosRankSum=1.697;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1718,174,0 chrV 563665 . A T 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=116;Dels=0.00;FS=4.210;HaplotypeScore=7.8904;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=0.866;QD=21.79;ReadPosRankSum=1.672;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2561,261,0 chrV 563747 . C A 2592 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=25.66;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2625,270,0 chrV 563781 . G A 2826 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=25.23;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2859,294,0 chrV 563807 . A G 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=105;Dels=0.00;FS=2.652;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;MQRankSum=0.225;QD=22.52;ReadPosRankSum=2.402;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:2,102:105:99:2398,252,0 chrV 563882 . T A 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=123;Dels=0.02;FS=3.802;HaplotypeScore=5.3090;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=-0.144;QD=22.98;ReadPosRankSum=1.674;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2859,294,0 chrV 563956 . T C 2831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;MQRankSum=0.858;QD=23.59;ReadPosRankSum=2.367;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2864,297,0 chrV 563964 . C G 2806 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;QD=23.00;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2839,303,0 chrV 564006 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;QD=22.76;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2741,282,0 chrV 564048 . A G 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=3.402;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;MQRankSum=-0.986;QD=22.36;ReadPosRankSum=1.702;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2627,288,0 chrV 564065 . A G 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=3.095;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.37;MQ0=0;MQRankSum=-1.166;QD=20.59;ReadPosRankSum=1.632;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2174,246,0 chrV 564074 . T A 2021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=98;Dels=0.00;FS=6.134;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;MQRankSum=-0.577;QD=20.62;ReadPosRankSum=2.928;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:3,95:98:99:2054,225,0 chrV 564097 . T C 2351 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=21.37;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2384,261,0 chrV 564135 . C A 2443 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=21.81;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2476,261,0 chrV 564147 . C T 2359 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;QD=20.69;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2392,252,0 chrV 564195 . C A 1986 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.9548;MLEAC=2;MLEAF=1.00;MQ=32.21;MQ0=0;QD=19.66;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2019,222,0 chrV 564197 . C T 1689 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.8543;MLEAC=2;MLEAF=1.00;MQ=31.03;MQ0=0;QD=17.78;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1722,201,0 chrV 564206 . G A 1118 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.04;FS=0.000;HaplotypeScore=6.8208;MLEAC=2;MLEAF=1.00;MQ=31.54;MQ0=0;QD=14.15;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1151,129,0 chrV 564212 . G A 1092 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=6.8208;MLEAC=2;MLEAF=1.00;MQ=33.48;MQ0=0;QD=13.82;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1125,123,0 chrV 564252 . C T 1127 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.13;MQ0=0;QD=15.87;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1160,135,0 chrV 564265 . T C 1068 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.74;MQ0=0;QD=16.43;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1101,132,0 chrV 564272 . A T 1059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.67;MQ0=0;MQRankSum=-0.052;QD=16.05;ReadPosRankSum=1.680;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1092,129,0 chrV 564300 . T C 929 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=0;QD=13.87;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:962,114,0 chrV 564304 . C A 944 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.79;MQ0=0;QD=14.09;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:977,114,0 chrV 564343 . A T 1057 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.36;MQ0=0;QD=13.55;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1090,117,0 chrV 564355 . T C 954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=0;MQRankSum=-1.687;QD=12.39;ReadPosRankSum=1.687;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:987,108,0 chrV 564360 . T C 1063 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=13.12;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1096,120,0 chrV 564372 . A G 980 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.39;MQ0=0;QD=12.41;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1013,114,0 chrV 564381 . A G 888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.741;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.06;MQ0=0;MQRankSum=1.049;QD=12.51;ReadPosRankSum=1.683;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:921,102,0 chrV 564395 . T G 350 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=6.48;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:51:383,51,0 chrV 564396 . G A 350 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=6.48;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:51:383,51,0 chrV 564397 . C T 353 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=6.54;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:51:386,51,0 chrV 564403 . A G 725 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=12.08;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:84:758,84,0 chrV 564406 . T G 675 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;QD=11.84;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:81:708,81,0 chrV 564431 . G A 358 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=9.18;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:45:391,45,0 chrV 564461 . G A 117.13 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=0;QD=5.58;SB=-1.081e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:18:150,18,0 chrV 564462 . T A 115.13 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=0;QD=5.48;SB=-1.081e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:18:148,18,0 chrV 564472 . T G 61.51 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=3.42;SB=-1.085e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:12:94,12,0 chrV 564485 . T C 146.06 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=0;QD=9.13;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:21:179,21,0 chrV 564486 . G C 170.03 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.45;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:24:203,24,0 chrV 564535 . C T 1005 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.30;MQ0=0;QD=21.38;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1038,111,0 chrV 564567 . T C 1352 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.99;MQ0=0;QD=22.53;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1385,144,0 chrV 564590 . T C 1142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.30;MQ0=0;MQRankSum=0.710;QD=21.15;ReadPosRankSum=2.359;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1175,123,0 chrV 564680 . T C 377 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=18.85;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:45:410,45,0 chrV 564701 . A C 106.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.28;SB=-5.614e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:139,15,0 chrV 564705 . T C 86.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.81;SB=-3.139e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:119,12,0 chrV 564717 . G A 87.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=12.50;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:120,12,0 chrV 564723 . C A 86.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=12.36;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:119,12,0 chrV 564730 . A G 82.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=11.79;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:115,12,0 chrV 564732 . T C 85.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=10.69;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:118,12,0 chrV 564809 . C T 1031 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=22.41;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1064,108,0 chrV 564814 . T C 998 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=20.37;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1031,108,0 chrV 564841 . G A 1007 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=20.98;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1040,99,0 chrV 564865 . A G 361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=34;Dels=0.00;FS=24.760;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;MQRankSum=-2.368;QD=10.62;ReadPosRankSum=2.793;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:3,31:34:42:394,42,0 chrV 564880 . A C 229 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.24;MQ0=0;QD=9.16;SB=-3.002e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:30:262,30,0 chrV 564894 . A G 236 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=0;QD=9.08;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:30:269,30,0 chrV 564898 . T C 239 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.51;MQ0=0;QD=8.24;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:30:272,30,0 chrV 564904 . A G 262 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;QD=9.36;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:33:295,33,0 chrV 564935 . A C 331 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=0;QD=8.95;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:39:364,39,0 chrV 564937 . T C 325 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=0;QD=8.78;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:39:358,39,0 chrV 564938 . T C 320 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;MQRankSum=0.923;QD=8.21;ReadPosRankSum=2.324;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:2,37:39:39:353,39,0 chrV 564945 . C T 421 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=8.59;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:48:454,48,0 chrV 564949 . A C 430 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.38;MQ0=0;QD=8.60;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:51:463,51,0 chrV 564968 . T C 647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=39.33;MQ0=0;MQRankSum=-1.505;QD=10.61;ReadPosRankSum=1.675;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:72:680,72,0 chrV 565013 . A G 1890 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.25;MQ0=0;QD=20.77;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1923,201,0 chrV 565036 . G C 2570 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=25.20;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2603,276,0 chrV 565093 . T C 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=38.12;MQ0=0;MQRankSum=-0.655;QD=22.31;ReadPosRankSum=1.703;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2688,314,0 chrV 565120 . T A 2195 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=105;Dels=0.00;FS=4.991;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=0;MQRankSum=-0.896;QD=20.90;ReadPosRankSum=3.206;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:4,101:105:99:2228,266,0 chrV 565122 . T G 2084 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=106;Dels=0.00;FS=5.121;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=0;MQRankSum=-0.738;QD=19.66;ReadPosRankSum=3.324;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:4,102:106:99:2117,254,0 chrV 565125 . A G 2072 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=33.26;MQ0=0;QD=19.92;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2105,245,0 chrV 565208 . G A 3106 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4260;MLEAC=2;MLEAF=1.00;MQ=38.46;MQ0=0;QD=25.67;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3139,324,0 chrV 565243 . G T 2361 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.59;MQ0=0;QD=24.34;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2394,243,0 chrV 565254 . T A 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=3.892;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;MQRankSum=-0.919;QD=22.47;ReadPosRankSum=1.697;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2235,228,0 chrV 565289 . T C 1869 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=93.5004;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;QD=17.97;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1902,207,0 chrV 565315 . G A 2168 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;QD=15.82;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2201,237,0 chrV 565361 . A G 1654 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.766;DP=118;Dels=0.01;FS=4.956;HaplotypeScore=11.8887;MLEAC=2;MLEAF=1.00;MQ=29.08;MQ0=0;MQRankSum=-2.702;QD=14.02;ReadPosRankSum=3.766;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:5,112:117:99:1687,186,0 chrV 565365 . T C 1595 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.90;MQ0=0;QD=14.77;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1628,183,0 chrV 565371 . A G 1435 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.30;MQ0=0;MQRankSum=0.866;QD=14.95;ReadPosRankSum=1.696;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1468,162,0 chrV 565372 . A C 1394 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=0;QD=14.67;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1427,162,0 chrV 565382 . A C 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=0;MQRankSum=1.941;QD=16.32;ReadPosRankSum=2.396;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1534,168,0 chrV 565388 . C G 1555 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.18;MQ0=0;QD=17.87;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1588,174,0 chrV 565436 . C G 1105 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;QD=17.82;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1138,123,0 chrV 565441 . G C 1146 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=18.19;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1179,126,0 chrV 565475 . T C 1217 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;QD=20.28;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1250,141,0 chrV 565488 . T C 1251 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.42;MQ0=0;QD=20.51;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1284,156,0 chrV 565507 . C T 1160 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=19.33;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1193,144,0 chrV 565512 . A G 1199 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.16;MQ0=0;QD=21.04;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1232,144,0 chrV 565539 . A C 1402 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.61;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1435,162,0 chrV 565639 . C T 2386 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=27.43;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2419,249,0 chrV 565651 . T C 2042 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.16;MQ0=0;QD=24.60;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2075,222,0 chrV 565675 . G T 1534 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.34;MQ0=0;QD=24.74;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1567,159,0 chrV 565711 . G A 105.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=9.56;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:138,18,0 chrV 565722 . A T 95.26 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=10.58;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:128,15,0 chrV 565729 . T C 70.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=11.75;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:103,12,0 chrV 565731 . A G 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=11.42;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:101,12,0 chrV 565737 . A T 52.97 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=0;QD=5.89;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:85,9,0 chrV 565740 . T A 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=6.71;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:79,9,0 chrV 565742 . G A 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=6.42;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:77,9,0 chrV 565746 . T A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=4.30;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:57,6,0 chrV 565749 . A C 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=4.13;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:56,6,0 chrV 565750 . G T 30.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=5.13;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:62,6,0 chrV 565761 . C T 84.51 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.45;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:12:117,12,0 chrV 565764 . C T 86.51 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.12;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:12:119,12,0 chrV 565775 . C T 137.13 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.27;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:18:170,18,0 chrV 565777 . G A 139.13 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.35;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:18:172,18,0 chrV 565780 . C T 152.13 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.85;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:18:185,18,0 chrV 565783 . G A 148.13 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.70;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:18:181,18,0 chrV 565785 . A G 150.13 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.77;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:18:183,18,0 chrV 565788 . G C 147.13 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.09;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,36:36:18:180,18,0 chrV 565791 . A T 179.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.84;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:21:212,21,0 chrV 565794 . T C 171.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=15.911;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;MQRankSum=1.644;QD=4.39;ReadPosRankSum=1.644;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,38:39:21:204,21,0 chrV 565800 . A G 219.01 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=5.09;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:27:252,27,0 chrV 565808 . C G 271 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=5.89;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:33:304,33,0 chrV 565834 . T G 649 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=12.02;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:72:682,72,0 chrV 565880 . C T 624 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;QD=18.91;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:69:657,69,0 chrV 565885 . A C 558 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=19.24;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:63:591,63,0 chrV 565891 . T A 425 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=21.25;SB=-6.648e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:48:458,48,0 chrV 565893 . C T 424 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=21.20;SB=-6.648e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:48:457,48,0 chrV 565894 . A G 410 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=20.50;SB=-6.648e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:48:443,48,0 chrV 565901 . G A 173.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=12.36;SB=-2.327e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:27:206,27,0 chrV 565902 . A G 173.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=12.36;SB=-2.327e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:27:206,27,0 chrV 565903 . A G 182.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=13.00;SB=-2.327e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:27:215,27,0 chrV 565905 . A G 268 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=19.14;SB=-1.032e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:33:301,33,0 chrV 565909 . T G 259 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=18.50;SB=-1.032e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:33:292,33,0 chrV 565932 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=4.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrV 565935 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=4.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrV 565938 . T A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=4.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrV 565939 . T G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=4.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrV 566295 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=1.00;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:43,6,0 chrV 566304 . A T 32.97 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=2.06;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:9:65,9,0 chrV 566309 . G A 32.97 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.13;MQ0=0;QD=1.74;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:9:65,9,0 chrV 566319 . A G 32.97 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.32;MQ0=0;QD=1.14;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,29:29:9:65,9,0 chrV 566328 . C T 62.51 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.81;MQ0=0;QD=2.02;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,31:31:12:95,12,0 chrV 566353 . A G 186.01 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.99;MQ0=0;QD=3.58;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:27:219,27,0 chrV 566354 . G A 186.01 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.99;MQ0=0;QD=3.58;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:27:219,27,0 chrV 566373 . G T 293 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=25.80;MQ0=0;QD=4.65;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:36:326,36,0 chrV 566376 . A G 227.33 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=25.87;MQ0=0;MQRankSum=0.653;QD=3.73;ReadPosRankSum=-1.051;SB=-3.392e-01 GT:AD:DP:GQ:PL 1/1:1,60:61:14:260,14,0 chrV 566388 . G A 277 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.59;MQ0=0;QD=3.96;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,70:70:33:310,33,0 chrV 566400 . T C 213.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=0;MQRankSum=-1.732;QD=3.33;ReadPosRankSum=1.678;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:1,63:64:27:246,27,0 chrV 566427 . T G 301 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=4.56;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:39:334,39,0 chrV 566434 . A G 206.01 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.68;SB=-8.702e+01 GT:AD:DP:GQ:PL 1/1:0,55:56:27:239,27,0 chrV 566463 . G A 122.13 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=0;QD=3.49;SB=-8.714e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:18:155,18,0 chrV 566466 . T C 123.13 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.28;MQ0=0;QD=3.62;SB=-8.714e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:18:156,18,0 chrV 566472 . A G 112.13 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.35;MQ0=0;QD=4.15;SB=-8.714e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:18:145,18,0 chrV 566512 . C A 125.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.97;MQ0=0;QD=11.37;SB=-8.904e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:21:158,21,0 chrV 566542 . G C 737 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.00;MQ0=0;QD=18.42;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:770,93,0 chrV 566565 . G A 1102 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=0;QD=18.37;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1135,129,0 chrV 566568 . T G 1059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=10.280;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.96;MQ0=0;MQRankSum=-1.678;QD=16.29;ReadPosRankSum=1.624;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1092,126,0 chrV 566580 . T C 1340 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.77;MQ0=0;QD=17.40;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1373,159,0 chrV 566672 . C G 852 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=31.03;MQ0=0;QD=21.30;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:93:885,93,0 chrV 566759 . C T 55.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:88,9,0 chrV 566768 . T C 50.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:83,9,0 chrV 566784 . T G 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:59,6,0 chrV 566799 . T C 51.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:84,9,0 chrV 567098 . G T 184.03 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.92;MQ0=0;QD=23.00;SB=-9.277e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:24:217,24,0 chrV 567115 . T G 256 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=0;QD=23.27;SB=-8.495e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:30:289,30,0 chrV 567180 . A G 120.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=15.03;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:153,15,0 chrV 567283 . G A 57.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=0;QD=8.22;SB=-4.326e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:90,12,0 chrV 567296 . T C 90.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;QD=8.21;SB=-1.301e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:15:123,15,0 chrV 567300 . T C 90.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=0;MQRankSum=0.134;QD=6.94;ReadPosRankSum=1.470;SB=-1.352e+02 GT:AD:DP:GQ:PL 1/1:1,12:13:15:123,15,0 chrV 567324 . A G 227 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=0;QD=14.19;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:30:260,30,0 chrV 567339 . G C 235 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=0;QD=12.37;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:30:268,30,0 chrV 567354 . A T 215.01 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=0;QD=11.32;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:27:248,27,0 chrV 567355 . T G 207.01 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=0;QD=10.90;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:27:240,27,0 chrV 567375 . A G 249 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=9.58;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:33:282,33,0 chrV 567388 . C G 223 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=7.43;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:30:256,30,0 chrV 567395 . G A 207.01 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=6.90;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:27:240,27,0 chrV 567403 . C T 200.01 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=5.88;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:27:233,27,0 chrV 567436 . T C 63.51 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.12;SB=-2.252e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:12:96,12,0 chrV 567461 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;QD=1.32;SB=-4.398e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:9:65,9,0 chrV 567466 . A C 83.26 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=3.78;SB=-4.327e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:15:116,15,0 chrV 567470 . G A 84.26 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=4.01;SB=-4.327e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:15:117,15,0 chrV 567473 . T C 82.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=0;MQRankSum=0.224;QD=4.84;ReadPosRankSum=2.162;SB=-4.327e+01 GT:AD:DP:GQ:PL 1/1:2,15:17:15:115,15,0 chrV 567475 . C T 84.26 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=4.68;SB=-4.327e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:15:117,15,0 chrV 567560 . T G 1476 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=21.09;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1509,159,0 chrV 567575 . T C 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.61;MQ0=0;MQRankSum=-1.022;QD=20.17;ReadPosRankSum=1.599;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1606,165,0 chrV 567597 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;QD=17.14;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1593,171,0 chrV 567642 . G T 2659 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=23.74;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2692,279,0 chrV 567681 . A T 2282 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=31.88;MQ0=0;QD=21.33;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2315,243,0 chrV 567699 . T G 1370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.21;MQ0=0;MQRankSum=-1.453;QD=15.75;ReadPosRankSum=1.613;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1403,159,0 chrV 567720 . T C 1005 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.52;MQ0=0;QD=12.56;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1038,117,0 chrV 567724 . A G 1020 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=33.07;MQ0=0;QD=12.29;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1053,117,0 chrV 567741 . G C 970 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.27;MQ0=0;QD=12.44;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1003,108,0 chrV 567743 . A C 1021 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;QD=12.76;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1054,114,0 chrV 567757 . G A 1201 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=38.12;MQ0=0;QD=13.05;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1234,129,0 chrV 567867 . G A 2049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.67;MQ0=0;MQRankSum=-1.260;QD=18.63;ReadPosRankSum=-0.913;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2082,190,0 chrV 567885 . G A 1754 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=0;QD=17.20;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1787,189,0 chrV 567899 . C A 1687 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.72;MQ0=0;QD=16.87;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1720,183,0 chrV 567958 . G T 2694 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;QD=17.96;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2727,279,0 chrV 567960 . T A 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=41.84;MQ0=0;MQRankSum=-1.553;QD=18.48;ReadPosRankSum=2.350;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2768,282,0 chrV 567994 . T C 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.44;MQ0=0;MQRankSum=1.407;QD=16.90;ReadPosRankSum=2.930;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:3,212:215:99:3633,381,0 chrV 568004 . G A 3697.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=1.9748;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=0;QD=17.04;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:3697,373,0 chrV 568023 . T G 404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.053;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=8.5097;MLEAC=2;MLEAF=1.00;MQ=37.75;MQ0=0;MQRankSum=-1.152;QD=1.80;ReadPosRankSum=2.254;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:2,23:223:45:437,45,0 chrV 568073 . T A 1587 SnpCluster AC=2;AF=1.00;AN=2;DP=202;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.66;MQ0=0;QD=7.86;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,199:199:99:1620,186,0 chrV 568074 . C T 1574 SnpCluster AC=2;AF=1.00;AN=2;DP=201;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;QD=7.83;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,198:198:99:1607,186,0 chrV 568077 . A G 1693 SnpCluster AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.59;MQ0=0;QD=8.26;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,203:205:99:1726,189,0 chrV 568090 . T C 2337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=36.13;MQ0=0;MQRankSum=-0.556;QD=10.57;ReadPosRankSum=1.716;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:1,220:221:99:2370,255,0 chrV 568123 . A G 3408.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.09;MQ0=0;QD=15.21;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:3408,360,0 chrV 568132 . A G 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=4.547;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.25;MQ0=0;MQRankSum=-0.733;QD=17.62;ReadPosRankSum=1.665;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:3683,390,0 chrV 568152 . A G 4803.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.5169;MLEAC=2;MLEAF=1.00;MQ=41.24;MQ0=0;QD=22.34;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4803,507,0 chrV 568309 . G A 5889.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=35.54;MQ0=0;QD=23.28;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5889,598,0 chrV 568351 . C T 2875 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=9.9429;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=0;QD=21.30;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2908,300,0 chrV 568377 . T C 1859 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=19.36;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1892,204,0 chrV 568378 . G A 1913 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=19.93;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1946,204,0 chrV 568383 . A G 1743 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=0;MQRankSum=1.661;QD=16.76;ReadPosRankSum=2.402;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,101:104:99:1776,195,0 chrV 568387 . C T 1823 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;QD=16.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1856,192,0 chrV 568407 . A G 2445 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;MQRankSum=-0.080;QD=18.81;ReadPosRankSum=1.705;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2478,255,0 chrV 568408 . C T 2353 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=18.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2386,255,0 chrV 568423 . C T 3016 filter AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.24;MQ0=0;QD=19.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3049,301,0 chrV 568461 . G A 2994 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=0;QD=19.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3027,312,0 chrV 568469 . G A 2939 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=29.19;MQ0=0;QD=19.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2972,312,0 chrV 568471 . T C 2827 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=-0.318;QD=19.23;ReadPosRankSum=0.813;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2860,309,0 chrV 568484 . A G 2486 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;MQRankSum=-0.533;QD=20.21;ReadPosRankSum=2.943;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2519,267,0 chrV 569519 . C T 480 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=0;QD=21.82;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:54:513,54,0 chrV 569562 . A T 142.13 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.07;MQ0=2;QD=11.84;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:18:175,18,0 chrV 569619 . C T 159.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=4.9375;MLEAC=2;MLEAF=1.00;MQ=19.36;MQ0=5;QD=7.57;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,20:21:21:192,21,0 chrV 569627 . G A 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;DP=22;Dels=0.00;FS=1.957;HaplotypeScore=5.8845;MLEAC=1;MLEAF=0.500;MQ=19.90;MQ0=5;MQRankSum=0.337;QD=1.23;ReadPosRankSum=0.048;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:12,10:22:57:57,0,80 chrV 569628 . A G 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;DP=22;Dels=0.00;FS=4.560;HaplotypeScore=5.8845;MLEAC=1;MLEAF=0.500;MQ=19.90;MQ0=5;MQRankSum=-0.049;QD=1.23;ReadPosRankSum=-0.049;SB=-6.514e-03 GT:AD:DP:GQ:PL 0/1:13,9:22:57:57,0,82 chrV 569662 . T C 77.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.367;DP=26;Dels=0.00;FS=17.910;HaplotypeScore=16.5726;MLEAC=1;MLEAF=0.500;MQ=23.75;MQ0=2;MQRankSum=2.433;QD=2.96;ReadPosRankSum=-1.633;SB=-6.246e-03 GT:AD:DP:GQ:PL 0/1:20,6:26:99:107,0,150 chrV 569663 . G A 307 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=26;Dels=0.00;FS=10.073;HaplotypeScore=16.5726;MLEAC=2;MLEAF=1.00;MQ=23.75;MQ0=2;MQRankSum=1.201;QD=11.81;ReadPosRankSum=1.123;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:5,21:26:36:340,36,0 chrV 569670 . T C 193.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;DP=28;Dels=0.00;FS=1.527;HaplotypeScore=18.5018;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=1;MQRankSum=0.419;QD=6.89;ReadPosRankSum=-0.370;SB=-1.540e+02 GT:AD:DP:GQ:PL 0/1:12,16:28:77:223,0,77 chrV 569671 . T G 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220;DP=28;Dels=0.00;FS=4.151;HaplotypeScore=24.3814;MLEAC=1;MLEAF=0.500;MQ=25.96;MQ0=0;MQRankSum=0.371;QD=1.57;ReadPosRankSum=1.008;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,7:28:74:74,0,237 chrV 569674 . A T 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;DP=28;Dels=0.00;FS=4.151;HaplotypeScore=13.1864;MLEAC=1;MLEAF=0.500;MQ=25.96;MQ0=0;MQRankSum=0.849;QD=1.54;ReadPosRankSum=0.478;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,7:28:73:73,0,261 chrV 569681 . A G 153.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.218;DP=30;Dels=0.00;FS=20.658;HaplotypeScore=26.0981;MLEAC=1;MLEAF=0.500;MQ=25.50;MQ0=0;MQRankSum=1.046;QD=5.10;ReadPosRankSum=-0.419;SB=-3.079e-03 GT:AD:DP:GQ:PL 0/1:13,17:30:99:183,0,182 chrV 569691 . A G 70.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.343;DP=34;Dels=0.00;FS=33.503;HaplotypeScore=20.4219;MLEAC=1;MLEAF=0.500;MQ=24.38;MQ0=2;MQRankSum=0.370;QD=2.06;ReadPosRankSum=0.136;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,12:34:99:100,0,247 chrV 569692 . T C 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;DP=37;Dels=0.00;FS=38.942;HaplotypeScore=12.3301;MLEAC=1;MLEAF=0.500;MQ=24.42;MQ0=2;MQRankSum=1.905;QD=2.59;ReadPosRankSum=3.123;SB=1.18 GT:AD:DP:GQ:PL 0/1:29,8:37:99:126,0,217 chrV 569697 . A T 237.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;DP=38;Dels=0.00;FS=26.535;HaplotypeScore=12.9159;MLEAC=1;MLEAF=0.500;MQ=24.33;MQ0=2;MQRankSum=2.789;QD=6.24;ReadPosRankSum=0.000;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:17,21:38:99:267,0,113 chrV 569706 . A T 350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.6550;MLEAC=2;MLEAF=1.00;MQ=24.43;MQ0=2;MQRankSum=0.108;QD=10.29;ReadPosRankSum=1.625;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:39:383,39,0 chrV 569712 . G T 354 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.7327;MLEAC=2;MLEAF=1.00;MQ=24.11;MQ0=2;QD=11.06;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:42:387,42,0 chrV 569719 . A C 331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=31;Dels=0.00;FS=2.876;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.94;MQ0=2;MQRankSum=-0.880;QD=10.68;ReadPosRankSum=2.268;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:2,27:31:39:364,39,0 chrV 569746 . G A 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.289;DP=36;Dels=0.00;FS=24.123;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=17.94;MQ0=15;MQRankSum=-1.162;QD=1.39;ReadPosRankSum=0.387;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:10,26:36:80:80,0,110 chrV 569766 . G T 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;DP=30;Dels=0.00;FS=10.659;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.99;MQ0=16;MQRankSum=2.000;QD=0.47;ReadPosRankSum=0.133;SB=0.325 GT:AD:DP:GQ:PL 0/1:25,5:30:44:44,0,63 chrV 569768 . C T 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;DP=30;Dels=0.00;FS=10.659;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.99;MQ0=16;MQRankSum=1.067;QD=0.54;ReadPosRankSum=-0.133;SB=0.325 GT:AD:DP:GQ:PL 0/1:24,5:30:46:46,0,62 chrV 569838 . A G 129.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.78;MQ0=4;MQRankSum=1.488;QD=7.17;ReadPosRankSum=1.488;SB=-5.488e+01 GT:AD:DP:GQ:PL 1/1:3,15:18:18:162,18,0 chrV 569872 . A G 244.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;DP=67;Dels=0.00;FS=8.712;HaplotypeScore=34.7418;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=5;MQRankSum=3.000;QD=3.64;ReadPosRankSum=1.601;SB=-1.470e+02 GT:AD:DP:GQ:PL 0/1:51,16:67:99:274,0,466 chrV 569904 . C T 564.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;DP=82;Dels=0.00;FS=20.964;HaplotypeScore=49.0499;MLEAC=1;MLEAF=0.500;MQ=24.79;MQ0=4;MQRankSum=-2.469;QD=6.88;ReadPosRankSum=-2.433;SB=-1.390e+02 GT:AD:DP:GQ:PL 0/1:17,65:82:99:594,0,271 chrV 569905 . C G 279.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;DP=82;Dels=0.00;FS=1.112;HaplotypeScore=49.0499;MLEAC=1;MLEAF=0.500;MQ=24.79;MQ0=4;MQRankSum=0.835;QD=3.40;ReadPosRankSum=1.328;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:54,28:82:99:309,0,533 chrV 569911 . G T 131.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;DP=86;Dels=0.00;FS=22.731;HaplotypeScore=32.7191;MLEAC=1;MLEAF=0.500;MQ=25.00;MQ0=4;MQRankSum=-2.040;QD=1.52;ReadPosRankSum=-0.807;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:44,42:86:99:161,0,706 chrV 569943 . G A 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;DP=66;Dels=0.00;FS=42.369;HaplotypeScore=13.7058;MLEAC=1;MLEAF=0.500;MQ=23.40;MQ0=3;MQRankSum=-2.016;QD=1.20;ReadPosRankSum=4.954;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,44:66:99:109,0,174 chrV 569969 . G A 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=1;MLEAF=0.500;MQ=21.28;MQ0=1;MQRankSum=1.471;QD=0.42;ReadPosRankSum=-1.773;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:32,2:34:44:44,0,64 chrV 570039 . C T 56.97 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.03;MQ0=1;QD=9.50;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:89,9,0 chrV 570041 . C T 56.97 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.03;MQ0=1;QD=9.50;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:89,9,0 chrV 570042 . G A 49.04 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.80;MQ0=1;MQRankSum=0.736;QD=7.01;ReadPosRankSum=0.736;SB=0.027 GT:AD:DP:GQ:PL 0/1:2,5:7:18:79,0,18 chrV 570086 . T G 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.587;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=44.7707;MLEAC=1;MLEAF=0.500;MQ=25.72;MQ0=2;MQRankSum=1.069;QD=1.83;ReadPosRankSum=0.551;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,9:42:76:107,0,76 chrV 570087 . A T 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=44.7707;MLEAC=1;MLEAF=0.500;MQ=25.72;MQ0=2;MQRankSum=2.790;QD=1.76;ReadPosRankSum=1.099;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,8:42:99:104,0,126 chrV 570099 . T C 783 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=76;Dels=0.00;FS=34.146;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=20.91;MQ0=7;MQRankSum=0.174;QD=10.30;ReadPosRankSum=2.789;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:5,71:76:87:816,87,0 chrV 570134 . T C 1272 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.189;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=26.9843;MLEAC=2;MLEAF=1.00;MQ=22.08;MQ0=5;MQRankSum=-2.249;QD=13.98;ReadPosRankSum=-1.103;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1305,144,0 chrV 570192 . C A 96.46 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=16.0491;MLEAC=1;MLEAF=0.500;MQ=23.05;MQ0=0;MQRankSum=-0.164;QD=3.44;ReadPosRankSum=0.295;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:4,24:28:1:125,0,1 chrV 570295 . T G 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=21.21;MQ0=0;MQRankSum=-0.751;QD=1.98;ReadPosRankSum=0.751;SB=1.77 GT:AD:DP:GQ:PL 1/1:1,8:9:6:49,6,0 chrV 570296 . G T 12.99 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=21.21;MQ0=0;MQRankSum=0.751;QD=1.44;ReadPosRankSum=0.751;SB=2.69 GT:AD:DP:GQ:PL 1/1:1,8:9:6:44,6,0 chrV 570305 . T A 61.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.348;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.83;MQ0=0;MQRankSum=0.348;QD=6.15;ReadPosRankSum=0.696;SB=1.61 GT:AD:DP:GQ:PL 1/1:1,9:10:12:94,12,0 chrV 570309 . C T 62.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.044;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.83;MQ0=0;MQRankSum=0.348;QD=6.25;ReadPosRankSum=-1.741;SB=1.61 GT:AD:DP:GQ:PL 1/1:1,9:10:12:95,12,0 chrV 570314 . G A 62.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.348;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.83;MQ0=0;MQRankSum=0.696;QD=6.25;ReadPosRankSum=-1.741;SB=1.61 GT:AD:DP:GQ:PL 1/1:1,9:10:12:95,12,0 chrV 570317 . A G 62.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.044;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.83;MQ0=0;MQRankSum=-0.696;QD=6.25;ReadPosRankSum=-1.741;SB=1.61 GT:AD:DP:GQ:PL 1/1:1,9:10:12:95,12,0 chrVI 4568 . C A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.01;MQ0=4;QD=1.68;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,12:13:6:53,6,0 chrVI 4669 . C A 157.77 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;DP=25;Dels=0.00;FS=13.877;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.28;MQ0=11;MQRankSum=-1.344;QD=6.31;ReadPosRankSum=1.626;SB=-2.071e+01 GT:AD:DP:GQ:PL 0/1:11,14:25:0:186,0,0 chrVI 4670 . A G 142.77 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;DP=24;Dels=0.00;FS=18.543;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.64;MQ0=11;MQRankSum=-2.113;QD=5.95;ReadPosRankSum=0.423;SB=-1.971e+01 GT:AD:DP:GQ:PL 0/1:11,13:24:0:171,0,0 chrVI 4680 . A G 142.20 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620;DP=19;Dels=0.00;FS=18.543;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.32;MQ0=6;MQRankSum=-2.113;QD=7.48;ReadPosRankSum=-2.620;SB=-1.814e+01 GT:AD:DP:GQ:PL 0/1:6,13:19:2:171,0,2 chrVI 4698 . A C 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;DP=55;Dels=0.00;FS=1.793;HaplotypeScore=39.2833;MLEAC=1;MLEAF=0.500;MQ=27.50;MQ0=3;MQRankSum=-0.241;QD=0.51;ReadPosRankSum=-0.723;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,8:55:58:58,0,579 chrVI 4981 . G A 53.55 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.490;DP=115;Dels=0.03;FS=0.000;HaplotypeScore=56.6597;MLEAC=1;MLEAF=0.500;MQ=15.06;MQ0=4;MQRankSum=-3.380;QD=0.47;ReadPosRankSum=2.317;SB=9.45 GT:AD:DP:GQ:PL 1/1:8,94:112:12:86,12,0 chrVI 5472 . T C 63.51 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.23;MQ0=7;QD=4.23;SB=-5.155e+01 GT:AD:DP:GQ:PL 1/1:6,9:15:12:96,12,0 chrVI 5476 . A G 116.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=17;Dels=0.00;FS=11.761;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.20;MQ0=7;MQRankSum=-0.480;QD=6.83;ReadPosRankSum=-1.733;SB=-2.188e+01 GT:AD:DP:GQ:PL 1/1:9,8:17:18:149,18,0 chrVI 5503 . C T 121.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.627;DP=21;Dels=0.00;FS=23.314;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.53;MQ0=7;MQRankSum=0.715;QD=5.77;ReadPosRankSum=3.165;SB=-1.588e+01 GT:AD:DP:GQ:PL 1/1:11,10:21:18:154,18,0 chrVI 5554 . G T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=17.80;MQ0=2;QD=1.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:12:6:55,6,0 chrVI 5711 . G A 281 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.76;MQ0=2;QD=11.71;SB=-7.600e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:42:314,42,0 chrVI 5761 . A C 283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.227;DP=22;Dels=0.00;FS=9.165;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.54;MQ0=0;MQRankSum=2.113;QD=12.86;ReadPosRankSum=2.227;SB=-7.200e+01 GT:AD:DP:GQ:PL 1/1:2,20:22:42:316,42,0 chrVI 5764 . C T 280 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.86;MQ0=0;QD=14.00;SB=-7.500e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:42:313,42,0 chrVI 5786 . G A 205 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.52;MQ0=0;QD=12.81;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:33:238,33,0 chrVI 5914 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.73;MQ0=0;QD=1.72;SB=-2.351e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrVI 5917 . A C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.73;MQ0=0;QD=1.72;SB=-2.351e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrVI 5919 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.73;MQ0=0;QD=1.72;SB=-2.351e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrVI 5922 . A T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.73;MQ0=0;QD=1.72;SB=-2.351e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrVI 5923 . G C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.73;MQ0=0;QD=1.72;SB=-2.351e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrVI 5925 . G C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.73;MQ0=0;QD=1.72;SB=-2.351e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrVI 5928 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.79;MQ0=0;QD=1.34;SB=-2.371e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:43,6,0 chrVI 5947 . C A 59.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.93;MQ0=0;QD=4.58;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:92,12,0 chrVI 5953 . G C 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.87;MQ0=0;QD=4.61;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:97,12,0 chrVI 5955 . A C 57.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.87;MQ0=0;QD=4.11;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:90,12,0 chrVI 5957 . G T 58.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.87;MQ0=0;QD=4.18;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:91,12,0 chrVI 5961 . C T 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.87;MQ0=0;QD=4.61;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:97,12,0 chrVI 5970 . C T 57.51 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.87;MQ0=0;QD=4.11;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:90,12,0 chrVI 5977 . T A 60.51 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.10;MQ0=0;QD=5.50;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:93,12,0 chrVI 5982 . T C 57.51 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.20;MQ0=0;QD=5.75;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:90,12,0 chrVI 5991 . A G 36.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.53;MQ0=0;MQRankSum=0.751;QD=4.11;ReadPosRankSum=0.751;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:1,8:9:9:69,9,0 chrVI 6018 . T C 38.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.94;MQ0=0;QD=5.57;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:71,9,0 chrVI 6021 . G T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.24;MQ0=0;QD=2.48;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:46,6,0 chrVI 6141 . G T 54.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.51;MQ0=0;MQRankSum=1.380;QD=9.09;ReadPosRankSum=0.000;SB=-2.155e+01 GT:AD:DP:GQ:PL 1/1:2,4:6:12:87,12,0 chrVI 6179 . A T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.90;MQ0=0;MQRankSum=0.727;QD=8.24;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,3:4:9:65,9,0 chrVI 6181 . T C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.90;MQ0=0;MQRankSum=0.727;QD=8.24;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,3:4:9:65,9,0 chrVI 6182 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.90;MQ0=0;MQRankSum=0.727;QD=8.24;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,3:4:9:65,9,0 chrVI 6324 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.720;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.28;MQ0=1;MQRankSum=1.380;QD=1.72;ReadPosRankSum=-0.720;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,2:7:6:43,6,0 chrVI 6351 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.20;MQ0=0;QD=2.41;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrVI 6353 . T A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.358;DP=5;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.20;MQ0=0;MQRankSum=1.231;QD=2.41;ReadPosRankSum=-0.358;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:2,3:5:6:43,6,0 chrVI 6354 . C A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.20;MQ0=0;QD=2.41;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrVI 6355 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.358;DP=6;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.87;MQ0=1;MQRankSum=1.231;QD=2.01;ReadPosRankSum=-0.358;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:3,3:6:6:43,6,0 chrVI 6372 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.406;DP=7;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.36;MQ0=1;MQRankSum=0.988;QD=1.72;ReadPosRankSum=1.537;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:4,3:7:6:43,6,0 chrVI 7032 . T A 171.01 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=8.09;MQ0=47;QD=1.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,99:104:27:204,27,0 chrVI 7037 . G A 171.01 filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.47;MQ0=40;QD=1.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,113:113:27:204,27,0 chrVI 7295 . G A 106.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.094;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=18.93;MQ0=143;MQRankSum=0.798;QD=0.32;ReadPosRankSum=-0.242;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:284,42:332:99:136,0,2484 chrVI 7397 . G T 367.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;DP=307;Dels=0.00;FS=5.038;HaplotypeScore=12.7243;MLEAC=1;MLEAF=0.500;MQ=15.65;MQ0=110;MQRankSum=0.432;QD=1.20;ReadPosRankSum=-0.551;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:229,73:307:99:397,0,1540 chrVI 7414 . T A 691.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.957;DP=253;Dels=0.00;FS=14.046;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=20.34;MQ0=99;MQRankSum=0.201;QD=2.73;ReadPosRankSum=0.079;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:168,85:253:99:721,0,1065 chrVI 7415 . T C 2325 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=255;Dels=0.00;FS=21.057;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=20.97;MQ0=97;MQRankSum=0.045;QD=9.12;ReadPosRankSum=2.827;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:4,250:255:99:2358,276,0 chrVI 7418 . C T 795.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.131;DP=248;Dels=0.00;FS=12.441;HaplotypeScore=4.7755;MLEAC=1;MLEAF=0.500;MQ=21.72;MQ0=91;MQRankSum=0.574;QD=3.21;ReadPosRankSum=-0.994;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:162,85:248:99:825,0,1190 chrVI 7511 . A G 1766.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.444;DP=307;Dels=0.00;FS=7.875;HaplotypeScore=8.5519;MLEAC=1;MLEAF=0.500;MQ=23.59;MQ0=77;MQRankSum=-0.281;QD=5.75;ReadPosRankSum=3.064;SB=-4.890e+02 GT:AD:DP:GQ:PL 0/1:99,208:307:99:1796,0,709 chrVI 7520 . T C 3067 filter AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=22.15;MQ0=89;QD=9.77;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,313:314:99:3100,351,0 chrVI 7619 . A T 548 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=15.13;MQ0=28;MQRankSum=1.216;QD=7.31;ReadPosRankSum=1.585;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:10,65:75:72:581,72,0 chrVI 7643 . G C 361 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.28;MQ0=6;QD=11.65;SB=-6.725e-03 GT:AD:DP:GQ:PL 1/1:0,30:31:45:394,45,0 chrVI 7656 . C T 463 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.78;MQ0=9;QD=13.62;SB=-6.545e-03 GT:AD:DP:GQ:PL 1/1:0,33:34:54:496,54,0 chrVI 7684 . C G 207.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.224;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=9.6467;MLEAC=1;MLEAF=0.500;MQ=22.23;MQ0=17;MQRankSum=0.744;QD=3.91;ReadPosRankSum=-2.009;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,19:53:99:237,0,283 chrVI 7686 . G T 71.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.529;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=9.6467;MLEAC=1;MLEAF=0.500;MQ=22.08;MQ0=17;MQRankSum=1.076;QD=1.37;ReadPosRankSum=-1.038;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,9:52:99:101,0,413 chrVI 7689 . A C 191.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=9.6467;MLEAC=1;MLEAF=0.500;MQ=21.87;MQ0=18;MQRankSum=0.620;QD=3.60;ReadPosRankSum=-0.586;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,18:53:99:221,0,280 chrVI 7692 . A G 214.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=9.6467;MLEAC=1;MLEAF=0.500;MQ=21.87;MQ0=18;MQRankSum=-0.149;QD=4.04;ReadPosRankSum=0.314;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,19:53:99:244,0,230 chrVI 7693 . G A 239.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.571;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=9.6467;MLEAC=1;MLEAF=0.500;MQ=21.87;MQ0=18;MQRankSum=0.149;QD=4.51;ReadPosRankSum=0.578;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,19:53:99:269,0,210 chrVI 7698 . C T 122.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=21.00;MQ0=21;MQRankSum=-0.563;QD=2.18;ReadPosRankSum=-0.393;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,30:56:99:152,0,267 chrVI 7699 . T C 221.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=21.00;MQ0=21;MQRankSum=-0.700;QD=3.95;ReadPosRankSum=0.871;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,26:56:99:251,0,126 chrVI 7701 . T C 497 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.550;DP=59;Dels=0.00;FS=57.602;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=20.93;MQ0=20;MQRankSum=2.079;QD=8.42;ReadPosRankSum=3.550;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:5,54:59:57:530,57,0 chrVI 7740 . C T 460 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.668;DP=79;Dels=0.00;FS=2.606;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.51;MQ0=44;MQRankSum=2.064;QD=5.82;ReadPosRankSum=0.911;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:19,59:79:54:493,54,0 chrVI 7745 . A T 387 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.95;MQ0=42;QD=5.53;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:48:420,48,0 chrVI 7746 . G A 346 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.223;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.95;MQ0=42;MQRankSum=2.275;QD=4.94;ReadPosRankSum=-0.580;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:15,55:70:42:379,42,0 chrVI 7752 . G A 336 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.53;MQ0=47;QD=4.42;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:42:369,42,0 chrVI 8060 . C T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=9.57;MQ0=26;QD=0.37;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,45:45:6:48,6,0 chrVI 8094 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.34;MQ0=59;QD=0.23;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,78:78:6:49,6,0 chrVI 8108 . G A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.09;MQ0=59;QD=0.24;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,74:75:6:49,6,0 chrVI 9959 . G A 2840.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.189;DP=451;Dels=0.00;FS=12.746;HaplotypeScore=13.0316;MLEAC=1;MLEAF=0.500;MQ=20.69;MQ0=92;MQRankSum=1.539;QD=6.30;ReadPosRankSum=-0.644;SB=-1.425e+03 GT:AD:DP:GQ:PL 0/1:238,212:451:99:2870,0,3735 chrVI 11006 . A G 416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.37;MQ0=0;MQRankSum=1.103;QD=18.09;ReadPosRankSum=1.419;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:1,21:23:51:449,51,0 chrVI 11314 . G A 1450 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.02;FS=0.000;HaplotypeScore=30.9621;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=2;QD=16.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1483,162,0 chrVI 11844 . T A 5551.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.383;DP=522;Dels=0.00;FS=14.859;HaplotypeScore=19.4485;MLEAC=2;MLEAF=1.00;MQ=19.36;MQ0=103;MQRankSum=-0.081;QD=10.63;ReadPosRankSum=3.416;SB=-3.013e+03 GT:AD:DP:GQ:PL 1/1:4,518:522:99:5551,624,0 chrVI 11941 . C G 5539.01 filter AC=2;AF=1.00;AN=2;DP=425;Dels=0.00;FS=0.000;HaplotypeScore=24.4166;MLEAC=2;MLEAF=1.00;MQ=22.60;MQ0=106;QD=13.03;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,422:425:99:5539,618,0 chrVI 12139 . C T 9744.01 filter AC=2;AF=1.00;AN=2;DP=459;Dels=0.00;FS=0.000;HaplotypeScore=20.6581;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=2;QD=21.23;SB=-4.834e+03 GT:AD:DP:GQ:PL 1/1:0,457:459:99:9744,1060,0 chrVI 12416 . T A 4515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.482;DP=220;Dels=0.00;FS=18.332;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=37.75;MQ0=3;MQRankSum=-1.086;QD=20.52;ReadPosRankSum=4.458;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:7,213:220:99:4515,507,0 chrVI 12436 . G A 4470.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=2;QD=21.49;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4470,489,0 chrVI 12453 . T C 3590.01 filter AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=18;QD=20.63;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3590,393,0 chrVI 12495 . A T 299 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=59;Dels=0.00;FS=10.569;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=18.65;MQ0=40;MQRankSum=-1.528;QD=5.07;ReadPosRankSum=2.192;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:2,57:59:36:332,36,0 chrVI 12663 . T C 1394 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=25;QD=14.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1427,159,0 chrVI 12665 . C T 1336 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=25;QD=14.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1369,159,0 chrVI 14683 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=2.60;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:52,6,0 chrVI 14696 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;MQRankSum=-1.159;QD=1.49;ReadPosRankSum=1.448;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:1,11:12:6:49,6,0 chrVI 14704 . A G 44.97 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=3.46;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:77,9,0 chrVI 14713 . A G 43.97 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=2.93;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:76,9,0 chrVI 14722 . G A 69.51 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=4.63;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:102,12,0 chrVI 14734 . G A 53.97 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=3.60;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:86,9,0 chrVI 14737 . G T 72.51 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=4.83;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:105,12,0 chrVI 14749 . G A 102.26 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=6.82;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:135,15,0 chrVI 14755 . C T 99.26 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=7.09;SB=-2.723e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:132,15,0 chrVI 14758 . A T 94.26 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=6.73;SB=-2.723e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:127,15,0 chrVI 14770 . G A 90.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=6.94;SB=-2.718e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:123,15,0 chrVI 14773 . A C 70.51 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.41;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:103,12,0 chrVI 14779 . T C 57.97 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.44;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:90,9,0 chrVI 14782 . G A 51.97 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.77;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:84,9,0 chrVI 14788 . T C 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.28;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:83,9,0 chrVI 14884 . C T 74.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.64;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:107,12,0 chrVI 14922 . C G 272 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.00;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:36:305,36,0 chrVI 14925 . T A 303 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=8.016;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=-0.822;QD=15.95;ReadPosRankSum=1.552;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,18:19:36:336,36,0 chrVI 14931 . G A 339 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=15.41;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:42:372,42,0 chrVI 14985 . G A 160.22 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;DP=14;Dels=0.00;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.70;MQ0=0;MQRankSum=1.713;QD=11.44;ReadPosRankSum=0.156;SB=-1.052e+02 GT:AD:DP:GQ:PL 0/1:3,11:14:10:190,0,10 chrVI 14991 . T A 237 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.70;MQ0=0;QD=16.93;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:33:270,33,0 chrVI 15003 . A G 150.22 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620;DP=13;Dels=0.00;FS=2.774;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.08;MQ0=0;MQRankSum=2.282;QD=11.56;ReadPosRankSum=-2.620;SB=-7.716e+01 GT:AD:DP:GQ:PL 0/1:3,10:13:10:180,0,10 chrVI 15021 . G A 89.03 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386;DP=10;Dels=0.00;FS=3.233;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.46;MQ0=0;MQRankSum=1.580;QD=8.90;ReadPosRankSum=-2.166;SB=-6.503e+01 GT:AD:DP:GQ:PL 0/1:3,7:10:19:119,0,19 chrVI 15030 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.51;MQ0=0;QD=4.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrVI 15132 . G A 37.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=9.49;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:70,9,0 chrVI 15141 . C T 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=13.90;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:102,12,0 chrVI 15147 . G A 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=13.30;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:99,12,0 chrVI 15150 . T C 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=12.90;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:97,12,0 chrVI 15177 . G A 119.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;MQRankSum=0.751;QD=13.28;ReadPosRankSum=0.751;SB=-1.423e+00 GT:AD:DP:GQ:PL 1/1:1,8:9:2:149,2,0 chrVI 15201 . T C 158.03 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.26;MQ0=0;QD=15.80;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:24:191,24,0 chrVI 15204 . A G 112.54 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.26;MQ0=0;MQRankSum=1.733;QD=11.25;ReadPosRankSum=-0.480;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,8:10:2:142,2,0 chrVI 15225 . G A 30.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.47;MQ0=0;MQRankSum=1.495;QD=4.32;ReadPosRankSum=-1.495;SB=0.195 GT:AD:DP:GQ:PL 0/1:2,5:7:10:60,0,10 chrVI 15231 . T A 29.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.19;MQ0=0;MQRankSum=0.720;QD=4.87;ReadPosRankSum=-1.380;SB=0.195 GT:AD:DP:GQ:PL 0/1:2,4:6:10:59,0,10 chrVI 15240 . C T 60.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.19;MQ0=0;QD=10.09;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:93,12,0 chrVI 15243 . A G 58.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.19;MQ0=0;QD=9.75;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:91,12,0 chrVI 16594 . A G 81.26 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=5.80;SB=-2.718e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:114,15,0 chrVI 16688 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=0.64;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,34:34:6:53,6,0 chrVI 16689 . C T 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=0.58;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,34:34:6:51,6,0 chrVI 16696 . G A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=0.76;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,34:34:6:57,6,0 chrVI 16699 . T C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=29.9618;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=0.58;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,34:34:6:51,6,0 chrVI 16722 . C T 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.208;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=2.9364;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;MQRankSum=1.525;QD=0.92;ReadPosRankSum=1.663;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,49:50:9:79,9,0 chrVI 16723 . T C 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.472;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.5138;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;MQRankSum=-0.118;QD=0.89;ReadPosRankSum=2.865;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:3,49:53:9:79,9,0 chrVI 16726 . A C 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.788;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.9779;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;MQRankSum=-0.341;QD=0.69;ReadPosRankSum=2.662;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:4,61:65:9:77,9,0 chrVI 16730 . G A 51.97 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=0.81;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,62:62:9:84,9,0 chrVI 16733 . T A 99.26 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=1.24;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,80:80:15:132,15,0 chrVI 16736 . T C 125.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;MQRankSum=-0.645;QD=1.46;ReadPosRankSum=1.692;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:1,85:86:18:158,18,0 chrVI 16759 . C G 295 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=2.98;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,99:99:36:328,36,0 chrVI 16763 . T C 380 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=85.0527;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=3.92;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,97:97:45:413,45,0 chrVI 16769 . C T 379 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=340.2109;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=4.12;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:45:412,45,0 chrVI 16770 . G C 380 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=340.2109;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=4.13;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:45:413,45,0 chrVI 16803 . G C 497 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=30.07;MQ0=0;QD=4.07;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,122:122:57:530,57,0 chrVI 16818 . A C 488 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=0;QD=4.17;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,117:117:60:521,60,0 chrVI 16824 . A C 513 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.71;MQ0=0;QD=4.84;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:63:546,63,0 chrVI 16826 . G C 525 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;QD=4.77;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:63:558,63,0 chrVI 16830 . T C 527 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=0;MQRankSum=-2.162;QD=4.75;ReadPosRankSum=2.228;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:66:560,66,0 chrVI 16896 . C T 2618 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;QD=17.57;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2651,288,0 chrVI 16905 . T G 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;MQRankSum=-0.606;QD=17.37;ReadPosRankSum=1.710;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2813,327,0 chrVI 16931 . A T 3471.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=19.28;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3471,378,0 chrVI 17065 . T C 5373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=234;Dels=0.00;FS=2.971;HaplotypeScore=18.6728;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=1.048;QD=22.96;ReadPosRankSum=2.386;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:2,231:234:99:5373,603,0 chrVI 17130 . T C 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=204;Dels=0.00;FS=2.901;HaplotypeScore=4.1329;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=0.458;QD=20.32;ReadPosRankSum=2.340;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:2,199:204:99:4145,477,0 chrVI 17148 . G A 4123.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=20.31;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4123,453,0 chrVI 17210 . A C 5253.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.98;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5253,594,0 chrVI 17394 . C T 4020.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.3208;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=20.20;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4020,435,0 chrVI 17399 . A G 3706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=198;Dels=0.00;FS=2.944;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-1.798;QD=18.72;ReadPosRankSum=2.387;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:2,194:198:99:3706,426,0 chrVI 17653 . A G 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.292;DP=151;Dels=0.00;FS=8.689;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=1.018;QD=20.68;ReadPosRankSum=3.256;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:4,144:151:99:3155,351,0 chrVI 17723 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.96;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3645,399,0 chrVI 17807 . C T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.4144;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.23;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3764,408,0 chrVI 17843 . T C 2855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=131;Dels=0.00;FS=13.513;HaplotypeScore=11.4770;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-2.080;QD=21.79;ReadPosRankSum=2.428;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:4,127:131:99:2888,315,0 chrVI 17852 . A G 2573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=129;Dels=0.00;FS=6.072;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=1.071;QD=19.95;ReadPosRankSum=2.709;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:3,125:129:99:2606,288,0 chrVI 17963 . C T 5227.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.13;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5227,576,0 chrVI 17987 . C T 4670.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=21.52;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4670,519,0 chrVI 18017 . G A 3968.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=19.84;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3968,453,0 chrVI 18212 . G A 4487.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=23.2614;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.94;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4487,501,0 chrVI 18304 . T G 4752.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.8998;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.18;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4752,528,0 chrVI 18339 . G A 3685.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.7004;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.29;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3685,417,0 chrVI 18358 . G A 3668.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.84;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3668,414,0 chrVI 18380 . C T 3672.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.23;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3672,402,0 chrVI 18546 . A G 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.1486;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-0.577;QD=21.13;ReadPosRankSum=1.712;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3698,432,0 chrVI 18618 . G A 3536.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.43;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3536,387,0 chrVI 18651 . T C 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=149;Dels=0.00;FS=4.952;HaplotypeScore=12.9193;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=1.709;QD=22.46;ReadPosRankSum=1.355;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3346,381,0 chrVI 18719 . C A 2886 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;QD=19.24;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2919,324,0 chrVI 18731 . C T 2853 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=132.1791;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=19.15;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2886,318,0 chrVI 18775 . G C 2791 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.5928;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=17.78;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:2824,309,0 chrVI 18810 . G C 2403 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.92;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2436,273,0 chrVI 19068 . A G 2749 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.91;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2782,312,0 chrVI 19129 . A T 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=123;Dels=0.00;FS=6.877;HaplotypeScore=11.2830;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=1.230;QD=23.99;ReadPosRankSum=2.370;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2984,333,0 chrVI 19184 . G A 2607 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.14;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2640,285,0 chrVI 19219 . C T 1999 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.73;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2032,225,0 chrVI 19333 . T A 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=140;Dels=0.00;FS=6.113;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.130;QD=23.06;ReadPosRankSum=2.907;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:3262,351,0 chrVI 19346 . C T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.2283;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.75;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3390,375,0 chrVI 19414 . G A 2493 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=20.27;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2526,291,0 chrVI 19425 . A G 2317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=117;Dels=0.00;FS=7.793;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=-2.345;QD=19.80;ReadPosRankSum=2.387;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2350,258,0 chrVI 19460 . T A 1667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-0.505;QD=17.36;ReadPosRankSum=1.696;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1700,189,0 chrVI 19466 . A C 1822 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=17.86;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1855,207,0 chrVI 19604 . A T 2833 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.96;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2866,327,0 chrVI 19616 . C T 2814 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=24.05;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2847,312,0 chrVI 19711 . C T 2425 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=26.36;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2458,267,0 chrVI 19827 . G T 2038 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=21.68;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2071,234,0 chrVI 19853 . C G 1788 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7194;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=20.32;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1821,207,0 chrVI 19876 . A T 1528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=0;MQRankSum=-1.656;QD=16.79;ReadPosRankSum=1.694;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1561,180,0 chrVI 19914 . A T 984 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.035;DP=95;Dels=0.00;FS=2.917;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.95;MQ0=0;MQRankSum=-2.165;QD=10.36;ReadPosRankSum=2.398;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1017,120,0 chrVI 19919 . C T 1200 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=13.79;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1233,135,0 chrVI 19923 . T C 1103 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=13.62;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1136,126,0 chrVI 19942 . A G 1090 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;QD=13.46;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1123,129,0 chrVI 19952 . C A 1102 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=0;QD=12.81;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1135,126,0 chrVI 19961 . C A 1099 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=13.08;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1132,129,0 chrVI 19969 . G C 1177 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=12.93;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1210,138,0 chrVI 19972 . C T 1168 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;QD=12.70;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1201,138,0 chrVI 19980 . C T 1224 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=32.47;MQ0=0;QD=12.12;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1257,141,0 chrVI 20043 . C T 1886 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=14.51;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1919,216,0 chrVI 20049 . A G 1869 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;QD=14.05;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,128:133:99:1902,216,0 chrVI 20087 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=15.41;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1913,219,0 chrVI 20096 . C T 1645 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.78;MQ0=0;QD=12.85;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:1678,198,0 chrVI 20103 . T C 1685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=39.14;MQ0=0;MQRankSum=-0.935;QD=13.27;ReadPosRankSum=1.650;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,125:127:99:1718,207,0 chrVI 20134 . T C 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=115;Dels=0.00;FS=2.590;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;MQRankSum=-1.290;QD=17.69;ReadPosRankSum=2.922;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2067,240,0 chrVI 20162 . T C 2091 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;QD=16.60;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2124,246,0 chrVI 20170 . A G 2242 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;QD=18.23;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2275,255,0 chrVI 20226 . A G 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.4499;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;MQRankSum=-0.233;QD=20.59;ReadPosRankSum=1.708;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:2977,339,0 chrVI 20296 . C A 2532 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;QD=21.46;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2565,294,0 chrVI 20333 . T G 2254 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;QD=22.77;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2287,252,0 chrVI 20335 . A G 2082 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=21.24;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2115,246,0 chrVI 20390 . A G 1669 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=19.87;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1702,189,0 chrVI 20451 . A G 908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;MQRankSum=1.444;QD=18.92;ReadPosRankSum=1.660;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:941,105,0 chrVI 20567 . A C 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.11;SB=-2.595e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:78,9,0 chrVI 20569 . G A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.20;SB=-2.671e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:51,6,0 chrVI 20573 . T A 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.97;SB=-3.374e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:58,6,0 chrVI 20580 . T C 48.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;QD=5.44;SB=-2.791e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:81,9,0 chrVI 20719 . C G 600 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=44.3994;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=0;QD=11.76;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:69:633,69,0 chrVI 20748 . G A 247 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.60;MQ0=0;QD=4.75;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:33:280,33,0 chrVI 20752 . A C 288 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.74;MQ0=0;QD=5.65;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:36:321,36,0 chrVI 20756 . A T 281 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.11;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:33:314,33,0 chrVI 20768 . C T 282 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.71;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:33:315,33,0 chrVI 20769 . G C 228 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.43;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:30:261,30,0 chrVI 20770 . G A 274 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.52;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:33:307,33,0 chrVI 20774 . T C 266 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.88;MQ0=0;MQRankSum=-1.662;QD=5.43;ReadPosRankSum=1.662;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:33:299,33,0 chrVI 20817 . T C 695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;DP=52;Dels=0.00;FS=5.365;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.942;QD=13.37;ReadPosRankSum=2.786;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:3,49:52:81:728,81,0 chrVI 20952 . A T 3644.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.3274;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=23.36;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3644,402,0 chrVI 21060 . G A 3827.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.05;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3827,417,0 chrVI 21267 . A G 4194.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.56;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4194,459,0 chrVI 21408 . G A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3355,381,0 chrVI 21492 . A G 4615.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.0765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4615,510,0 chrVI 21552 . C A 4517.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.77;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4517,513,0 chrVI 21881 . G A 3871.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.7482;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.91;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3871,423,0 chrVI 21975 . G A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.11;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4067,447,0 chrVI 21999 . C T 4062.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=21.16;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4062,444,0 chrVI 22035 . A G 4505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=213;Dels=0.00;FS=7.470;HaplotypeScore=9.0380;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-1.639;QD=21.15;ReadPosRankSum=2.380;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:2,210:213:99:4505,504,0 chrVI 22065 . A T 5100.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.18;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5100,549,0 chrVI 22204 . C G 4395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=209;Dels=0.00;FS=3.630;HaplotypeScore=15.8404;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-1.220;QD=21.03;ReadPosRankSum=0.435;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:1,202:209:99:4395,504,0 chrVI 22274 . T C 3526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.334;DP=225;Dels=0.00;FS=12.241;HaplotypeScore=18.1288;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.470;QD=15.67;ReadPosRankSum=3.271;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:4,217:225:99:3526,399,0 chrVI 22395 . A G 4293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=204;Dels=0.00;FS=2.917;HaplotypeScore=11.9279;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.526;QD=21.04;ReadPosRankSum=2.425;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4293,480,0 chrVI 22414 . A C 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.660;DP=206;Dels=0.00;FS=1.869;HaplotypeScore=8.1694;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.172;QD=19.57;ReadPosRankSum=2.408;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:5,200:206:99:4032,444,0 chrVI 22525 . G C 4645.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.3093;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.77;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4645,534,0 chrVI 22632 . T C 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.148;DP=195;Dels=0.00;FS=15.005;HaplotypeScore=10.0010;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.716;QD=21.41;ReadPosRankSum=4.089;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:6,189:195:99:4175,468,0 chrVI 22715 . T G 4330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=199;Dels=0.00;FS=6.177;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=-1.839;QD=21.76;ReadPosRankSum=2.350;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:2,195:199:99:4330,489,0 chrVI 22833 . T G 3134 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.39;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3167,357,0 chrVI 22905 . C T 2692 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=20.09;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2725,294,0 chrVI 22923 . A G 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=140;Dels=0.00;FS=2.639;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;MQRankSum=-1.318;QD=19.25;ReadPosRankSum=2.361;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2728,294,0 chrVI 22927 . T C 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=4.280;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=0.171;QD=18.39;ReadPosRankSum=1.708;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2645,294,0 chrVI 23085 . A G 2549 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2372;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.76;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2582,291,0 chrVI 23305 . T G 2169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=109;Dels=0.00;FS=6.994;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.440;QD=19.90;ReadPosRankSum=2.247;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2202,246,0 chrVI 23330 . A G 2151 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.41;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2184,237,0 chrVI 23356 . G T 2503 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1099;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.02;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2536,276,0 chrVI 23390 . T C 3820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=1.626;QD=23.29;ReadPosRankSum=2.405;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3820,435,0 chrVI 23608 . G A 4513.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=7.2827;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.15;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4513,495,0 chrVI 23620 . C T 4960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.420;DP=245;Dels=0.00;FS=4.283;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-0.639;QD=20.24;ReadPosRankSum=-0.894;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,243:245:99:4960,521,0 chrVI 24214 . G T 5978.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=28.4022;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.08;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5978,651,0 chrVI 25898 . A G 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=3.405;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.619;QD=23.11;ReadPosRankSum=1.694;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2182,240,0 chrVI 26594 . A T 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=6.804;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.008;QD=21.60;ReadPosRankSum=2.356;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3391,372,0 chrVI 27338 . G C 4092.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.7421;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=21.88;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,181:187:99:4092,459,0 chrVI 27371 . C T 4039.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.5934;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=21.04;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4039,456,0 chrVI 27376 . A G 4042.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.0234;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=20.94;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4042,450,0 chrVI 27436 . T A 4074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.4655;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.666;QD=20.89;ReadPosRankSum=1.697;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4074,444,0 chrVI 27484 . C T 3940.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.1641;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.96;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3940,435,0 chrVI 27574 . T C 997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;MQRankSum=-1.652;QD=5.73;ReadPosRankSum=1.712;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:1030,117,0 chrVI 27592 . A G 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=165;Dels=0.00;FS=10.646;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;MQRankSum=1.043;QD=11.12;ReadPosRankSum=2.957;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:1867,201,0 chrVI 27660 . A G 4240.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.31;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4240,471,0 chrVI 27763 . T C 2826 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3489;MLEAC=2;MLEAF=1.00;MQ=42.61;MQ0=0;QD=18.84;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2859,330,0 chrVI 27878 . T C 3814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=170;Dels=0.00;FS=6.360;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.556;QD=22.44;ReadPosRankSum=2.363;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3814,426,0 chrVI 27960 . A G 2614 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=92.1227;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.08;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2647,294,0 chrVI 28033 . T G 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2522;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.560;QD=19.27;ReadPosRankSum=2.383;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2865,327,0 chrVI 28051 . T C 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.3736;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=1.284;QD=18.48;ReadPosRankSum=1.691;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3174,357,0 chrVI 28146 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.8544;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.358;QD=21.76;ReadPosRankSum=1.672;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3786,423,0 chrVI 28318 . A G 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=170;Dels=0.00;FS=6.309;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.359;QD=23.16;ReadPosRankSum=2.333;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3938,432,0 chrVI 28542 . T C 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.107;QD=21.93;ReadPosRankSum=1.696;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4277,477,0 chrVI 28662 . T A 4964.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-2.837e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4964,540,0 chrVI 28916 . T C 4262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=192;Dels=0.00;FS=2.904;HaplotypeScore=11.9517;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.829;QD=22.20;ReadPosRankSum=2.424;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4262,474,0 chrVI 29620 . G A 4615.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.3141;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.85;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4615,507,0 chrVI 29691 . G T 4309.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.68;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4309,471,0 chrVI 29732 . A G 4499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=1.260;QD=21.12;ReadPosRankSum=1.716;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4499,507,0 chrVI 29751 . T A 5057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=221;Dels=0.00;FS=5.451;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-1.152;QD=22.88;ReadPosRankSum=1.685;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:5057,552,0 chrVI 29907 . G T 3048 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7801;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=21.62;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3081,336,0 chrVI 30085 . T C 990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.011;DP=55;Dels=0.00;FS=32.085;HaplotypeScore=9.6407;MLEAC=2;MLEAF=1.00;MQ=31.08;MQ0=0;MQRankSum=-2.713;QD=18.00;ReadPosRankSum=1.363;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:6,49:55:97:1023,97,0 chrVI 30187 . G A 1833 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=22.08;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1866,216,0 chrVI 30270 . T C 2230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=94;Dels=0.00;FS=2.627;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=0.013;QD=23.72;ReadPosRankSum=2.397;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2263,246,0 chrVI 30312 . T C 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=3.041;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;MQRankSum=-1.027;QD=20.65;ReadPosRankSum=2.382;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2284,261,0 chrVI 30348 . T C 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.500;DP=149;Dels=0.00;FS=12.327;HaplotypeScore=9.0618;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;MQRankSum=-1.950;QD=16.50;ReadPosRankSum=3.788;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:5,142:149:99:2491,288,0 chrVI 30357 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.7554;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=17.31;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2664,303,0 chrVI 30382 . G A 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=4.278;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;MQRankSum=-0.680;QD=15.00;ReadPosRankSum=-1.601;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2403,267,0 chrVI 30393 . G T 2250 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=14.06;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2283,252,0 chrVI 30510 . G C 2365 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.31;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2398,267,0 chrVI 30544 . A T 2145 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=21.45;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2178,249,0 chrVI 30616 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=22.90;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3261,369,0 chrVI 30834 . T A 1938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=98;Dels=0.00;FS=5.958;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.732;QD=19.78;ReadPosRankSum=2.887;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:3,95:98:99:1971,222,0 chrVI 30954 . T A 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.673;DP=114;Dels=0.00;FS=12.590;HaplotypeScore=12.9406;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.726;QD=20.09;ReadPosRankSum=2.885;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2323,252,0 chrVI 31117 . T A 1998 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.70;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2031,228,0 chrVI 31360 . G T 1607 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=23.99;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1640,180,0 chrVI 31448 . G C 2636 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=22.72;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2669,288,0 chrVI 31484 . G C 2211 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=14.08;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,152:157:99:2244,252,0 chrVI 31506 . A C 2662 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=16.96;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2695,297,0 chrVI 31522 . G A 2068 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;QD=13.70;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2101,249,0 chrVI 31531 . C G 2082 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=125.1793;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=13.88;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2115,234,0 chrVI 31596 . A G 1958 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=17.64;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1991,219,0 chrVI 31613 . A G 2234 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=124.6796;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=16.19;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2267,255,0 chrVI 31648 . A G 2577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=4.316;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=1;MQRankSum=-1.462;QD=16.52;ReadPosRankSum=1.710;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:2610,294,0 chrVI 31669 . T G 3114 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=1;QD=16.74;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3147,351,0 chrVI 31855 . T A 3599.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=23.99;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3599,390,0 chrVI 31946 . A C 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=3.840;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-1.356;QD=22.43;ReadPosRankSum=-0.628;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3128,348,0 chrVI 31980 . C T 2948 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.19;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2981,339,0 chrVI 32162 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.05;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2914,312,0 chrVI 32204 . C T 2558 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.25;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2591,282,0 chrVI 32259 . T G 2564 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=23.10;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2597,288,0 chrVI 32484 . C G 1353 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.13;MQ0=0;QD=19.06;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1386,156,0 chrVI 32508 . T C 1136 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.76;MQ0=0;QD=21.04;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1169,129,0 chrVI 32748 . A C 40.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.13;MQ0=0;QD=4.55;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:9:9:73,9,0 chrVI 32754 . T C 294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.625;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=37.62;MQ0=0;MQRankSum=-2.625;QD=6.39;ReadPosRankSum=2.803;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:3,43:46:36:327,36,0 chrVI 32800 . C T 1448 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;QD=18.33;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1481,162,0 chrVI 32886 . C A 2208 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=23.74;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2241,252,0 chrVI 32918 . G A 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;MQRankSum=-1.605;QD=20.79;ReadPosRankSum=0.000;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1738,195,0 chrVI 32931 . T G 1279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=0;MQRankSum=1.115;QD=17.52;ReadPosRankSum=1.353;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1312,153,0 chrVI 32955 . A C 1102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=75;Dels=0.00;FS=7.758;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=37.56;MQ0=0;MQRankSum=-1.233;QD=14.69;ReadPosRankSum=2.088;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1135,132,0 chrVI 32964 . C T 1002 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=64.7560;MLEAC=2;MLEAF=1.00;MQ=37.88;MQ0=0;QD=13.73;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1035,117,0 chrVI 33008 . A T 1923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=101;Dels=0.00;FS=6.884;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=0;MQRankSum=1.280;QD=19.04;ReadPosRankSum=2.401;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1956,219,0 chrVI 33158 . T A 2343 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=22.10;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2376,261,0 chrVI 33177 . C A 2110 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=20.29;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2143,237,0 chrVI 33187 . A C 2061 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=19.44;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2094,237,0 chrVI 33222 . G A 2466 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=21.08;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2499,279,0 chrVI 33267 . T A 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=3.680;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-0.220;QD=24.71;ReadPosRankSum=1.705;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3146,339,0 chrVI 33328 . C T 2074 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.85;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2107,234,0 chrVI 33340 . T C 1960 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=17.35;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1993,228,0 chrVI 33496 . G A 2552 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.81;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2585,279,0 chrVI 33689 . G A 3455.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.5539;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.98;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3455,372,0 chrVI 33797 . T C 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=144;Dels=0.00;FS=5.247;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.667;QD=21.70;ReadPosRankSum=2.880;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:3,139:144:99:3158,360,0 chrVI 33886 . A C 5202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=239;Dels=0.00;FS=4.486;HaplotypeScore=19.9585;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.571;QD=21.77;ReadPosRankSum=1.688;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:1,235:239:99:5202,609,0 chrVI 34508 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.92;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2523,282,0 chrVI 34741 . T G 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=1.541;QD=21.96;ReadPosRankSum=1.705;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2844,327,0 chrVI 34775 . A G 2486 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=18.98;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2519,294,0 chrVI 34780 . C T 2715 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.38;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2748,300,0 chrVI 34881 . T C 2845 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.701;DP=162;Dels=0.01;FS=12.903;HaplotypeScore=22.8388;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;MQRankSum=-0.967;QD=17.56;ReadPosRankSum=4.631;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:8,152:160:99:2878,315,0 chrVI 34884 . G A 2763 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=22.8388;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=17.49;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:2796,303,0 chrVI 34886 . A G 2627 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=162;Dels=0.00;FS=4.638;HaplotypeScore=24.6169;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;MQRankSum=0.130;QD=16.22;ReadPosRankSum=1.667;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:2660,303,0 chrVI 34967 . T C 5141.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.55;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5141,573,0 chrVI 35042 . T C 4806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=240;Dels=0.00;FS=2.752;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;MQRankSum=-0.601;QD=20.03;ReadPosRankSum=2.429;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:2,237:240:99:4806,543,0 chrVI 35048 . T G 4593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=235;Dels=0.00;FS=2.694;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;MQRankSum=-0.005;QD=19.54;ReadPosRankSum=2.387;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:2,232:235:99:4593,534,0 chrVI 35114 . T C 4693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.965;DP=260;Dels=0.00;FS=5.959;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;MQRankSum=-1.774;QD=18.05;ReadPosRankSum=2.965;SB=-3.099e+03 GT:AD:DP:GQ:PL 1/1:3,255:260:99:4693,513,0 chrVI 35118 . A G 4613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=267;Dels=0.00;FS=6.724;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;MQRankSum=-1.808;QD=17.28;ReadPosRankSum=2.412;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:2,262:267:99:4613,516,0 chrVI 35261 . T C 6429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=303;Dels=0.00;FS=3.292;HaplotypeScore=16.0569;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.383;QD=21.22;ReadPosRankSum=1.721;SB=-3.769e+03 GT:AD:DP:GQ:PL 1/1:1,302:303:99:6429,732,0 chrVI 35310 . G A 4636.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=5.8155;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=20.16;SB=-2.936e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4636,501,0 chrVI 35313 . C T 4405.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=19.49;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4405,480,0 chrVI 35368 . T C 3773.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=17.80;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,208:212:99:3773,429,0 chrVI 35370 . C T 3922.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=18.68;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:3922,426,0 chrVI 35385 . G A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.6816;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=17.34;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:3658,405,0 chrVI 35514 . A G 3815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=176;Dels=0.00;FS=3.007;HaplotypeScore=14.6016;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.984;QD=21.68;ReadPosRankSum=2.366;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3815,417,0 chrVI 35586 . G A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=19.75;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3911,429,0 chrVI 35589 . A G 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=191;Dels=0.00;FS=3.834;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;MQRankSum=0.608;QD=19.38;ReadPosRankSum=1.714;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3701,426,0 chrVI 35604 . A C 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=200;Dels=0.00;FS=3.798;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;MQRankSum=-0.757;QD=19.10;ReadPosRankSum=1.715;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:3819,423,0 chrVI 35661 . C T 3099 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=18.67;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3132,342,0 chrVI 35729 . C T 3165 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=20.55;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3198,345,0 chrVI 35794 . A G 3197 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=18.16;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3230,354,0 chrVI 35807 . T C 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=4.590;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.570;QD=18.55;ReadPosRankSum=1.690;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3112,339,0 chrVI 35855 . G C 2161 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=47.14;MQ0=0;QD=16.75;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2194,243,0 chrVI 35905 . A C 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=118;Dels=0.00;FS=2.567;HaplotypeScore=6.2181;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;MQRankSum=-0.462;QD=18.05;ReadPosRankSum=2.941;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2163,246,0 chrVI 35915 . C T 2142 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=19.47;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2175,240,0 chrVI 35920 . G A 2112 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=18.53;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2145,234,0 chrVI 35940 . A T 2617 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.77;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2650,285,0 chrVI 36181 . T C 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.315;DP=124;Dels=0.00;FS=8.953;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=0.506;QD=22.52;ReadPosRankSum=2.902;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:4,119:124:99:2825,309,0 chrVI 36247 . A G 4001.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.40;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4001,435,0 chrVI 36301 . C T 3837.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.13;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3837,423,0 chrVI 36358 . T C 3451.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.97;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3451,384,0 chrVI 36394 . G A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.0860;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.04;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3294,354,0 chrVI 36423 . T G 3275.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.60;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3275,381,0 chrVI 36462 . C T 3959.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.24;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3959,432,0 chrVI 36552 . A G 2167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.469;QD=19.01;ReadPosRankSum=2.885;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2200,249,0 chrVI 36642 . G A 1539 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.24;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1572,171,0 chrVI 36795 . A T 1675 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.04;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1708,192,0 chrVI 36857 . G C 2010 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.1236;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.65;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2043,231,0 chrVI 36925 . G T 2277 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.00;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2310,264,0 chrVI 37000 . A G 3384.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.0570;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.56;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3384,381,0 chrVI 37039 . G C 3965.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.5612;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.74;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3965,444,0 chrVI 37159 . C T 3145 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3178,354,0 chrVI 37497 . A G 3306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.5796;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.792;QD=23.45;ReadPosRankSum=1.707;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3306,369,0 chrVI 37537 . A G 3687.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.3534;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.58;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3687,408,0 chrVI 37852 . G A 3956.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.3968;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=24.27;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3956,435,0 chrVI 37951 . A T 3974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=176;Dels=0.00;FS=2.769;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.635;QD=22.58;ReadPosRankSum=2.422;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3974,447,0 chrVI 38005 . G A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=21.99;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3563,390,0 chrVI 38029 . C T 2781 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=19.31;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2814,318,0 chrVI 38035 . C T 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=135;Dels=0.00;FS=4.491;HaplotypeScore=1.9312;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.654;QD=18.97;ReadPosRankSum=1.706;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2594,279,0 chrVI 38041 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.2342;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=16.71;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2373,270,0 chrVI 38588 . G T 1732 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1765,189,0 chrVI 38681 . T C 1787 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.1020;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.42;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1820,201,0 chrVI 38909 . A G 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=9.494;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=0.175;QD=20.38;ReadPosRankSum=1.693;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1847,204,0 chrVI 38918 . T C 1749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-1.559;QD=18.22;ReadPosRankSum=2.345;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:2,92:96:99:1782,198,0 chrVI 39269 . C T 1759 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.91;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1792,201,0 chrVI 39419 . G C 2043 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.28;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2076,231,0 chrVI 39488 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.71;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3221,351,0 chrVI 39521 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.0995;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.18;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3575,387,0 chrVI 39609 . G T 3897.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.21;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3897,426,0 chrVI 39674 . C G 3522.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.87;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3522,393,0 chrVI 39808 . C T 4118.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=22.63;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4118,453,0 chrVI 39950 . C A 4162.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.1896;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.34;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4162,447,0 chrVI 40027 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.30;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3200,360,0 chrVI 40189 . A G 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.0899;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.738;QD=21.58;ReadPosRankSum=2.409;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2644,291,0 chrVI 40232 . A C 2619 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.47;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2652,294,0 chrVI 40338 . A T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7574;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.90;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3442,378,0 chrVI 40564 . C T 4454.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.1976;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.20;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4454,489,0 chrVI 40603 . T C 4227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=198;Dels=0.00;FS=9.780;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.599;QD=21.35;ReadPosRankSum=2.965;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:4227,471,0 chrVI 40771 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.11;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3338,363,0 chrVI 40841 . G A 2896 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.62;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2929,324,0 chrVI 41032 . G A 2549 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2582,279,0 chrVI 41221 . G C 3624.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,143:148:99:3624,396,0 chrVI 41296 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3212,351,0 chrVI 41461 . A C 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.178;QD=21.49;ReadPosRankSum=1.263;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3149,354,0 chrVI 41500 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3094,342,0 chrVI 41563 . G T 4132.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.5985;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.48;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4132,450,0 chrVI 41688 . G A 2553 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2586,288,0 chrVI 41722 . C T 2578 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2611,288,0 chrVI 41791 . A G 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=115;Dels=0.00;FS=3.046;HaplotypeScore=11.8844;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.165;QD=20.68;ReadPosRankSum=2.363;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:2,111:115:99:2411,267,0 chrVI 41842 . T C 2396 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.5742;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.98;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2429,273,0 chrVI 41899 . T G 2361 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.18;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2394,279,0 chrVI 41939 . C T 2594 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=22.96;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2627,285,0 chrVI 42070 . C G 2667 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.6569;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.51;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2700,309,0 chrVI 42167 . G A 2902 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.50;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2935,318,0 chrVI 42240 . A G 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=3.424;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.919;QD=22.05;ReadPosRankSum=1.706;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2943,336,0 chrVI 42346 . A G 1900 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.00;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1933,225,0 chrVI 42349 . T C 1962 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.87;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1995,219,0 chrVI 42617 . A G 377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=24;Dels=0.00;FS=4.260;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.722;QD=15.71;ReadPosRankSum=1.589;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:48:410,48,0 chrVI 42633 . G A 551 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=16.70;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:66:584,66,0 chrVI 42684 . T C 1271 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.84;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1304,144,0 chrVI 42725 . T A 1379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.195;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=0.490;QD=23.78;ReadPosRankSum=2.365;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1412,153,0 chrVI 42772 . T A 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.706;QD=23.75;ReadPosRankSum=1.689;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1957,225,0 chrVI 42955 . A G 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=154;Dels=0.00;FS=6.397;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.710;QD=21.79;ReadPosRankSum=2.386;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3356,369,0 chrVI 42970 . T G 2976 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.52;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3009,345,0 chrVI 42992 . G A 2929 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.2682;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.22;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2962,318,0 chrVI 43072 . A G 3143 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.11;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3176,345,0 chrVI 43129 . T C 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=172;Dels=0.00;FS=7.126;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.693;QD=21.74;ReadPosRankSum=2.350;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3740,417,0 chrVI 43169 . C T 3909.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.69;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3909,429,0 chrVI 43198 . A G 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=8.241;HaplotypeScore=10.4691;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.899;QD=23.46;ReadPosRankSum=2.400;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3519,390,0 chrVI 43492 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.26;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3261,357,0 chrVI 43673 . G A 2662 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2695,288,0 chrVI 43907 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.0791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3400,378,0 chrVI 44192 . A G 3982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.646;DP=186;Dels=0.00;FS=12.095;HaplotypeScore=16.8305;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.078;QD=21.41;ReadPosRankSum=3.764;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:5,181:186:99:3982,459,0 chrVI 44552 . A G 3772.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=22.32;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3772,423,0 chrVI 44748 . T C 4261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=223;Dels=0.00;FS=2.978;HaplotypeScore=6.9115;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=1.456;QD=19.11;ReadPosRankSum=2.383;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:2,218:222:99:4261,477,0 chrVI 44754 . C T 4241.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.3151;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=18.93;SB=-2.952e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4241,456,0 chrVI 44763 . A G 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=238;Dels=0.00;FS=3.029;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;MQRankSum=-0.490;QD=16.90;ReadPosRankSum=2.357;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:4022,456,0 chrVI 44772 . G A 4069.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=16.88;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:4069,453,0 chrVI 45217 . A G 4904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.772;QD=22.29;ReadPosRankSum=1.669;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4904,540,0 chrVI 45282 . C T 3728.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.7634;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.12;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3728,426,0 chrVI 45764 . A G 5806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.328;DP=255;Dels=0.00;FS=8.690;HaplotypeScore=12.8998;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.900;QD=22.77;ReadPosRankSum=3.391;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:4,245:255:99:5806,657,0 chrVI 45896 . C A 4440.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=20.27;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4440,483,0 chrVI 45929 . T C 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.929;DP=234;Dels=0.00;FS=1.653;HaplotypeScore=12.8857;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.083;QD=16.79;ReadPosRankSum=4.101;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:6,226:234:99:3929,438,0 chrVI 45941 . T C 4000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=233;Dels=0.00;FS=9.260;HaplotypeScore=10.4904;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=1.674;QD=17.17;ReadPosRankSum=2.952;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:3,228:233:99:4000,447,0 chrVI 46010 . T C 6412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=15.2048;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.223;QD=21.09;ReadPosRankSum=2.368;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:2,300:304:99:6412,729,0 chrVI 46185 . T C 6405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=298;Dels=0.00;FS=4.023;HaplotypeScore=8.2781;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=1.139;QD=21.49;ReadPosRankSum=1.697;SB=-2.976e+03 GT:AD:DP:GQ:PL 1/1:1,297:298:99:6405,735,0 chrVI 46215 . A G 6128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=283;Dels=0.00;FS=2.564;HaplotypeScore=13.3817;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.450;QD=21.65;ReadPosRankSum=2.968;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:3,280:283:99:6128,678,0 chrVI 46302 . C T 5614.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5614,612,0 chrVI 46380 . A G 4618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=210;Dels=0.00;FS=2.738;HaplotypeScore=20.8021;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.899;QD=21.99;ReadPosRankSum=2.403;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:4618,522,0 chrVI 46872 . C T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.11;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4045,435,0 chrVI 46902 . G A 3915.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.24;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3915,450,0 chrVI 47103 . C T 4263.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.80;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4263,477,0 chrVI 47620 . T C 4777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=248;Dels=0.00;FS=3.338;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-0.824;QD=19.26;ReadPosRankSum=1.690;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:4777,522,0 chrVI 47625 . T C 4900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=254;Dels=0.00;FS=3.366;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=0.736;QD=19.29;ReadPosRankSum=1.678;SB=-3.132e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:4900,537,0 chrVI 47639 . C T 4234.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=17.87;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4234,486,0 chrVI 48049 . G C 4713.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.01;FS=0.000;HaplotypeScore=16.2840;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.33;SB=-2.762e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4713,537,0 chrVI 48220 . G A 5214.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.5733;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.25;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5214,553,0 chrVI 48275 . T G 6034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=267;Dels=0.00;FS=2.717;HaplotypeScore=20.0163;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=1.693;QD=22.60;ReadPosRankSum=2.413;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:2,264:267:99:6034,696,0 chrVI 48454 . C T 4540.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.48;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4540,495,0 chrVI 48535 . G C 5058.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=16.9611;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.60;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,253:258:99:5058,588,0 chrVI 48548 . T C 4801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=250;Dels=0.00;FS=6.236;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.112;QD=19.20;ReadPosRankSum=1.718;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,247:250:99:4801,564,0 chrVI 48613 . A G 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.519;QD=21.75;ReadPosRankSum=1.688;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3458,390,0 chrVI 48712 . T C 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.00;FS=3.724;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.233;QD=21.72;ReadPosRankSum=1.680;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2922,324,0 chrVI 48771 . G A 2091 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6493;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.24;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2124,234,0 chrVI 48940 . G T 1389 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.73;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,64:67:99:1422,159,0 chrVI 49181 . G A 2290 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.45;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2323,267,0 chrVI 49201 . T C 2490 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.28;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2523,282,0 chrVI 49360 . T A 4787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=216;Dels=0.00;FS=2.725;HaplotypeScore=8.9236;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-0.710;QD=22.16;ReadPosRankSum=2.381;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:4787,519,0 chrVI 49381 . T C 4684.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=20.10;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4684,540,0 chrVI 49453 . C T 5254.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.94;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5254,579,0 chrVI 49819 . T C 2760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=147;Dels=0.00;FS=2.612;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.477;QD=18.78;ReadPosRankSum=2.333;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2793,306,0 chrVI 49826 . G A 2665 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7440;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=18.90;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2698,294,0 chrVI 49963 . T C 5755.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=15.8688;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.31;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5755,642,0 chrVI 50137 . G A 6469.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.23;SB=-3.571e+03 GT:AD:DP:GQ:PL 1/1:0,289:290:99:6469,708,0 chrVI 50233 . C T 4700.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=20.0104;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.67;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:4700,540,0 chrVI 50320 . T C 5310.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=20.7646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5310,600,0 chrVI 51009 . T A 2252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.331;DP=121;Dels=0.00;FS=5.146;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.157;QD=18.61;ReadPosRankSum=1.703;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2285,255,0 chrVI 51067 . A G 1755 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.22;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1788,207,0 chrVI 51257 . A G 1757 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=74.3718;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=20.43;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1790,201,0 chrVI 51270 . C A 1351 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=16.08;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1384,156,0 chrVI 51333 . A G 2037 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.7781;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=18.35;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2070,231,0 chrVI 51343 . A G 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=116;Dels=0.00;FS=8.684;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-1.750;QD=19.54;ReadPosRankSum=2.407;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2300,261,0 chrVI 51526 . C T 2479 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.37;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2512,285,0 chrVI 51603 . G A 3285.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.90;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3285,372,0 chrVI 51748 . G A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.9450;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.22;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3972,421,0 chrVI 51970 . A G 4504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=210;Dels=0.00;FS=2.635;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=0.679;QD=21.45;ReadPosRankSum=2.391;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:2,206:210:99:4504,501,0 chrVI 52024 . A T 3984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.0311;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-2.031;QD=21.30;ReadPosRankSum=1.984;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:4,183:187:99:3984,456,0 chrVI 52423 . C T 5511.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=17.8640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-3.057e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5511,609,0 chrVI 52648 . T C 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=173;Dels=0.00;FS=6.817;HaplotypeScore=21.1740;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.591;QD=19.90;ReadPosRankSum=1.712;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3442,402,0 chrVI 52738 . G A 2463 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.5639;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.70;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2496,285,0 chrVI 52838 . G A 1387 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1420,153,0 chrVI 53035 . C T 105.26 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-2.876e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:15:138,15,0 chrVI 53077 . T A 324 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:39:357,39,0 chrVI 54858 . A G 2251 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.74;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2284,258,0 chrVI 54904 . A G 1930 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.69;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1963,219,0 chrVI 55127 . G A 1177 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=17.83;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1210,132,0 chrVI 55132 . A G 1159 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=17.04;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1192,135,0 chrVI 55480 . G A 5290.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.7744;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.00;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:5290,609,0 chrVI 55594 . C A 6033.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=15.3635;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.70;SB=-2.981e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:6033,657,0 chrVI 55864 . A G 4292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.716;DP=239;Dels=0.00;FS=2.269;HaplotypeScore=18.0144;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.049;QD=17.96;ReadPosRankSum=3.821;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:5,234:239:99:4292,486,0 chrVI 56298 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.7598;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3699,405,0 chrVI 56854 . G A 5737.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=13.0230;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.71;SB=-3.565e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:5737,630,0 chrVI 57672 . A G 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.877;QD=21.32;ReadPosRankSum=1.689;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1760,195,0 chrVI 57870 . A G 148.06 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.51;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:21:181,21,0 chrVI 58170 . T C 1382 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1415,159,0 chrVI 58233 . G T 1865 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.22;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1898,210,0 chrVI 58319 . C G 2062 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.42;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2095,234,0 chrVI 58327 . G A 1821 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.39;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1854,210,0 chrVI 58527 . G C 1956 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.9382;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.26;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,88:92:99:1989,225,0 chrVI 58653 . T C 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.138;DP=103;Dels=0.00;FS=11.344;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.161;QD=20.52;ReadPosRankSum=3.645;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:5,98:103:99:2147,240,0 chrVI 58715 . A G 2409 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.73;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2442,279,0 chrVI 58816 . C T 2611 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2644,300,0 chrVI 58949 . A G 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.7586;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.917;QD=16.86;ReadPosRankSum=1.709;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:2629,309,0 chrVI 58952 . A G 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.192;DP=160;Dels=0.00;FS=3.021;HaplotypeScore=8.3360;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-1.974;QD=15.62;ReadPosRankSum=0.760;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:2533,272,0 chrVI 58994 . T C 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=0.901;QD=18.14;ReadPosRankSum=1.712;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3172,369,0 chrVI 59811 . C A 1914 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.80;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1947,213,0 chrVI 59951 . A G 1859 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.46;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1892,207,0 chrVI 60218 . G A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.91;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3484,381,0 chrVI 60234 . G A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=21.52;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3336,366,0 chrVI 61110 . T A 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=3.167;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.216;QD=18.82;ReadPosRankSum=1.708;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2686,309,0 chrVI 61214 . A G 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=3.323;HaplotypeScore=8.2654;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.938;QD=22.29;ReadPosRankSum=1.708;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3243,354,0 chrVI 61226 . T C 3364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-1.732;QD=22.58;ReadPosRankSum=1.709;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3364,375,0 chrVI 61419 . C T 3965.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.66;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3965,435,0 chrVI 61610 . C T 4915.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.8255;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.40;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4915,534,0 chrVI 61686 . C T 5105.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.0702;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.01;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5105,552,0 chrVI 61694 . A G 4565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.957;QD=19.26;ReadPosRankSum=1.688;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:4565,522,0 chrVI 61808 . C T 3959.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.3073;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:3959,444,0 chrVI 62831 . C T 930 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=18.60;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:963,105,0 chrVI 62852 . A G 789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-0.495;QD=18.79;ReadPosRankSum=1.650;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:1,41:42:90:822,90,0 chrVI 63014 . C T 1118 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.70;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1151,129,0 chrVI 63394 . C G 2934 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.8075;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=16.58;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:2967,342,0 chrVI 63396 . T C 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.057;DP=178;Dels=0.00;FS=15.325;HaplotypeScore=3.7528;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-0.507;QD=17.33;ReadPosRankSum=4.130;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:6,171:178:99:3118,348,0 chrVI 64052 . T G 1811 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.86;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1844,210,0 chrVI 64249 . G A 1888 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.98;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1921,210,0 chrVI 64449 . C G 3297.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3297,375,0 chrVI 64781 . A T 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.685;QD=20.26;ReadPosRankSum=1.652;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2646,300,0 chrVI 65504 . G A 4058.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4058,468,0 chrVI 65802 . T G 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=179;Dels=0.00;FS=3.395;HaplotypeScore=19.5207;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.362;QD=21.30;ReadPosRankSum=1.713;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3812,429,0 chrVI 66428 . A G 4108.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.7264;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4108,477,0 chrVI 66782 . C T 3611.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=18.1831;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.52;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3611,393,0 chrVI 69778 . T C 3445.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.5932;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.51;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3445,393,0 chrVI 69817 . T C 4389.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.20;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4389,501,0 chrVI 70009 . G A 3542.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.47;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3542,387,0 chrVI 70057 . C T 3928.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.45;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3928,420,0 chrVI 70279 . A T 2210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-1.530;QD=21.46;ReadPosRankSum=1.698;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2243,246,0 chrVI 70295 . G A 2180 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=20.00;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2213,246,0 chrVI 70309 . T C 2156 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.08;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2189,252,0 chrVI 70348 . T A 2736 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.0813;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.54;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2769,297,0 chrVI 70408 . G A 2944 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.63;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2977,345,0 chrVI 70639 . G A 2296 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.46;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2329,255,0 chrVI 70822 . T C 1607 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.6386;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=16.92;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1640,186,0 chrVI 70827 . G A 1606 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=17.27;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1639,177,0 chrVI 70891 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=19.86;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2138,234,0 chrVI 70957 . T C 2825 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2858,315,0 chrVI 71011 . A G 2757 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.36;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2790,327,0 chrVI 71083 . A G 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=145;Dels=0.00;FS=6.234;HaplotypeScore=11.3516;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=1.873;QD=21.26;ReadPosRankSum=2.416;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3115,366,0 chrVI 71197 . A G 4114.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.64;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4114,453,0 chrVI 71500 . G A 4090.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.85;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4090,459,0 chrVI 71518 . A G 4482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=216;Dels=0.00;FS=9.783;HaplotypeScore=7.1369;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.481;QD=20.75;ReadPosRankSum=2.967;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:3,212:216:99:4482,504,0 chrVI 71932 . G A 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.247;DP=182;Dels=0.00;FS=3.463;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-1.732;QD=21.18;ReadPosRankSum=-0.590;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3855,410,0 chrVI 71950 . C T 3480.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=21.22;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3480,375,0 chrVI 71959 . C T 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=153;Dels=0.00;FS=3.214;HaplotypeScore=4.4775;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=0.849;QD=20.58;ReadPosRankSum=1.528;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3182,348,0 chrVI 72261 . T A 4161.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.19;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4161,444,0 chrVI 72603 . T A 4486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=3.167;HaplotypeScore=5.6857;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.114;QD=22.77;ReadPosRankSum=1.714;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4486,480,0 chrVI 72607 . T G 4032.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.00;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4032,471,0 chrVI 72636 . T C 3218.91 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=18.71;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3252,378,0 chrVI 72876 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.71;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2921,315,0 chrVI 72886 . C T 2827 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.64;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2860,315,0 chrVI 73033 . T C 3696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.773;DP=174;Dels=0.00;FS=9.494;HaplotypeScore=15.4415;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.204;QD=21.24;ReadPosRankSum=2.913;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:3,170:174:99:3696,423,0 chrVI 73237 . A G 1406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.103;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=2.103;QD=19.80;ReadPosRankSum=2.381;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1439,149,0 chrVI 73433 . A T 2333 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2366,261,0 chrVI 73540 . A G 2066 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.20;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2099,228,0 chrVI 73633 . T C 4576.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.0441;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.21;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4576,510,0 chrVI 73933 . G A 6738.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=12.9468;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.06;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,318:320:99:6738,783,0 chrVI 73981 . T C 8101.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=402;Dels=0.00;FS=2.990;HaplotypeScore=25.8784;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.720;QD=20.15;ReadPosRankSum=2.388;SB=-4.793e+03 GT:AD:DP:GQ:PL 1/1:2,398:402:99:8101,912,0 chrVI 74035 . G A 8577.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=461;Dels=0.00;FS=0.000;HaplotypeScore=7.8371;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=18.61;SB=-5.685e+03 GT:AD:DP:GQ:PL 1/1:0,461:461:99:8577,940,0 chrVI 74036 . C T 8574.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=467;Dels=0.00;FS=0.000;HaplotypeScore=6.0103;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=18.36;SB=-5.676e+03 GT:AD:DP:GQ:PL 1/1:0,465:467:99:8574,951,0 chrVI 74044 . A G 7836.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.086;DP=471;Dels=0.00;FS=13.933;HaplotypeScore=11.8344;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.273;QD=16.64;ReadPosRankSum=4.204;SB=-5.044e+03 GT:AD:DP:GQ:PL 1/1:6,465:471:99:7836,894,0 chrVI 74155 . A G 6905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=356;Dels=0.00;FS=2.545;HaplotypeScore=25.5948;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.867;QD=19.40;ReadPosRankSum=2.963;SB=-3.147e+03 GT:AD:DP:GQ:PL 1/1:3,351:356:99:6905,774,0 chrVI 74817 . G C 1403 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=18.71;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1436,165,0 chrVI 74849 . G T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;QD=0.38;SB=-5.558e+02 GT:AD:DP:GQ:PL 1/1:0,56:62:6:55,6,0 chrVI 74850 . A C 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.845;DP=62;Dels=0.00;FS=16.444;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=36.96;MQ0=0;MQRankSum=-0.874;QD=0.37;ReadPosRankSum=3.166;SB=-4.768e+02 GT:AD:DP:GQ:PL 1/1:4,58:62:6:54,6,0 chrVI 74858 . A G 751 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.84;MQ0=0;QD=13.41;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:90:784,90,0 chrVI 74862 . A G 767 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;QD=14.20;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:90:800,90,0 chrVI 74864 . A G 724 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;QD=13.41;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:87:757,87,0 chrVI 75052 . G A 1782 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.3091;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;QD=16.65;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1815,198,0 chrVI 75054 . A G 1728 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.753;DP=103;Dels=0.00;FS=21.779;HaplotypeScore=5.3091;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;MQRankSum=0.812;QD=16.78;ReadPosRankSum=2.931;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:3,99:103:99:1761,198,0 chrVI 75055 . A T 1724 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=99;Dels=0.00;FS=23.630;HaplotypeScore=1.9765;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;MQRankSum=1.317;QD=17.41;ReadPosRankSum=2.929;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:3,96:99:99:1757,195,0 chrVI 75101 . A G 1446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=146;Dels=0.00;FS=28.277;HaplotypeScore=16.4932;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;MQRankSum=0.722;QD=9.90;ReadPosRankSum=2.950;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:3,138:146:99:1479,165,0 chrVI 75322 . A G 4602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;MQRankSum=0.600;QD=22.02;ReadPosRankSum=1.715;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4602,513,0 chrVI 75397 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.560;DP=198;Dels=0.00;FS=11.119;HaplotypeScore=11.3224;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;MQRankSum=-1.594;QD=18.33;ReadPosRankSum=3.809;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:5,190:198:99:3629,408,0 chrVI 75434 . C T 3778.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=18.70;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:3778,411,0 chrVI 75446 . G A 3478.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=16.72;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3478,381,0 chrVI 75453 . C T 3164 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=15.07;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:3197,354,0 chrVI 75463 . C T 2732 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=13.46;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:2765,309,0 chrVI 75514 . C T 3523.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=17.79;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3523,402,0 chrVI 75702 . C A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.7856;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=17.75;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3354,369,0 chrVI 76126 . T C 1476 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.09;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1509,177,0 chrVI 76175 . T A 36.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.730;DP=86;Dels=0.00;FS=13.573;HaplotypeScore=72.8413;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=1.577;QD=0.43;ReadPosRankSum=2.636;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:3,83:86:9:69,9,0 chrVI 76268 . G T 2048 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=23.27;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2081,228,0 chrVI 76442 . G A 1507 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=18.60;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1540,174,0 chrVI 76481 . G A 940 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=37.46;MQ0=0;QD=17.41;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:973,108,0 chrVI 76487 . T C 811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.187;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=8.7324;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;MQRankSum=-1.004;QD=16.22;ReadPosRankSum=-3.305;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:4,45:50:93:844,93,0 chrVI 76495 . A C 560 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.086;DP=46;Dels=0.00;FS=22.641;HaplotypeScore=10.3098;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;MQRankSum=-2.163;QD=12.17;ReadPosRankSum=-0.721;SB=-3.248e+01 GT:AD:DP:GQ:PL 1/1:11,35:46:47:593,47,0 chrVI 76499 . A C 376.04 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;DP=42;Dels=0.00;FS=27.486;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=33.22;MQ0=0;MQRankSum=-0.896;QD=8.95;ReadPosRankSum=-2.778;SB=-8.032e+00 GT:AD:DP:GQ:PL 0/1:10,31:42:18:406,0,18 chrVI 76503 . T C 174.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;DP=22;Dels=0.00;FS=24.123;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=38.32;MQ0=0;MQRankSum=-3.086;QD=7.91;ReadPosRankSum=-2.561;SB=-6.540e-03 GT:AD:DP:GQ:PL 0/1:11,11:22:50:204,0,50 chrVI 76505 . T A 165.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;DP=23;Dels=0.00;FS=28.709;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=39.51;MQ0=0;MQRankSum=-2.308;QD=7.17;ReadPosRankSum=-2.370;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:12,11:23:71:195,0,71 chrVI 76507 . T A 110.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;DP=27;Dels=0.00;FS=37.410;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=43.16;MQ0=0;MQRankSum=-2.985;QD=4.07;ReadPosRankSum=-1.110;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,11:27:82:140,0,82 chrVI 76682 . A G 2544 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=25.70;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2577,288,0 chrVI 76783 . A G 4027.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.5725;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.62;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4027,444,0 chrVI 76851 . G A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=22.63;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3576,396,0 chrVI 76860 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=19.65;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3196,342,0 chrVI 76866 . C T 3322.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.13;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3322,360,0 chrVI 76914 . T C 3546.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.9533;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=18.00;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3546,393,0 chrVI 76992 . T C 4001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.525;QD=20.21;ReadPosRankSum=1.697;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4001,456,0 chrVI 77007 . T G 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=200;Dels=0.00;FS=5.585;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.935;QD=18.70;ReadPosRankSum=2.844;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:3739,426,0 chrVI 77340 . G A 6728.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=27.8379;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.77;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:0,309:309:99:6728,735,0 chrVI 77928 . T C 2723 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.1118;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.28;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2756,306,0 chrVI 77976 . G A 1596 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1629,174,0 chrVI 78202 . A G 4995.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.0527;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.79;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,206:210:99:4995,585,0 chrVI 78244 . G A 5133.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.9949;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.92;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5133,588,0 chrVI 78307 . T C 5085.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=302;Dels=0.00;FS=3.022;HaplotypeScore=17.6045;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.787;QD=16.84;ReadPosRankSum=2.384;SB=-3.886e+03 GT:AD:DP:GQ:PL 1/1:2,299:302:99:5085,564,0 chrVI 78568 . A G 5053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.652;DP=240;Dels=0.00;FS=11.796;HaplotypeScore=21.3813;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.208;QD=21.05;ReadPosRankSum=3.808;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:5,235:240:99:5053,573,0 chrVI 78613 . A T 4290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.514;QD=21.56;ReadPosRankSum=1.680;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4290,468,0 chrVI 78750 . G A 4340.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.0088;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=22.03;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4340,474,0 chrVI 78805 . G T 3463.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.8683;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=21.92;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3463,381,0 chrVI 78930 . A G 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=174;Dels=0.00;FS=7.126;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.564;QD=23.59;ReadPosRankSum=2.421;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:4104,450,0 chrVI 79343 . G C 3050 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.21;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3083,342,0 chrVI 79488 . C T 2630 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.21;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2663,300,0 chrVI 79515 . A G 2668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=129;Dels=0.00;FS=3.487;HaplotypeScore=8.1248;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-1.621;QD=20.68;ReadPosRankSum=1.649;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,124:129:99:2701,303,0 chrVI 79638 . C T 3145 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.39;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3178,345,0 chrVI 79755 . T C 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=-0.273;QD=18.88;ReadPosRankSum=1.714;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3607,408,0 chrVI 79758 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=189;Dels=0.00;FS=2.561;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=0.032;QD=18.99;ReadPosRankSum=2.931;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:3,185:189:99:3590,390,0 chrVI 79809 . A G 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=207;Dels=0.00;FS=7.823;HaplotypeScore=11.3716;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=0.745;QD=18.29;ReadPosRankSum=2.414;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:2,204:207:99:3785,423,0 chrVI 80049 . G A 4272.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.02;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4272,471,0 chrVI 80160 . T C 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=155;Dels=0.00;FS=4.973;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.832;QD=21.57;ReadPosRankSum=1.665;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3344,372,0 chrVI 80232 . T C 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=5.643;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.072;QD=21.92;ReadPosRankSum=1.703;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2707,297,0 chrVI 80290 . A G 2278 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2311,261,0 chrVI 80328 . T A 2447 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2480,267,0 chrVI 80524 . T C 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=133;Dels=0.00;FS=2.839;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.470;QD=23.38;ReadPosRankSum=2.357;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3142,357,0 chrVI 80683 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=15.3726;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.54;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2950,327,0 chrVI 80725 . A T 3158 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.63;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3191,348,0 chrVI 80830 . A T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.51;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3550,402,0 chrVI 81019 . C T 2957 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.25;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:2990,327,0 chrVI 81060 . A G 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.344;QD=19.86;ReadPosRankSum=1.706;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2714,306,0 chrVI 81445 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.78;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3256,369,0 chrVI 81673 . A G 2772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=148;Dels=0.00;FS=3.485;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=0.776;QD=18.73;ReadPosRankSum=1.684;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,144:148:99:2805,324,0 chrVI 81686 . T C 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=160;Dels=0.00;FS=2.930;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-0.394;QD=18.69;ReadPosRankSum=2.403;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3024,342,0 chrVI 81803 . C T 4221.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.26;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4221,453,0 chrVI 81869 . T C 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.7086;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-0.355;QD=20.49;ReadPosRankSum=1.668;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3340,360,0 chrVI 81877 . A G 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=162;Dels=0.00;FS=2.989;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-0.450;QD=18.90;ReadPosRankSum=2.419;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3095,345,0 chrVI 81880 . C G 2994 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=18.37;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3027,348,0 chrVI 81945 . T C 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=166;Dels=0.00;FS=3.090;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.892;QD=19.96;ReadPosRankSum=1.690;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3314,369,0 chrVI 82157 . T C 5330.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.97;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5330,603,0 chrVI 82265 . T C 4022.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4022,453,0 chrVI 82679 . T A 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.454;QD=22.77;ReadPosRankSum=1.639;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2583,279,0 chrVI 82990 . T G 3119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=139;Dels=0.00;FS=2.708;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.088;QD=22.44;ReadPosRankSum=2.379;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3152,348,0 chrVI 83044 . A G 3147 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.16;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3180,369,0 chrVI 83101 . G A 3094 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.63;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3127,333,0 chrVI 83105 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.04;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3004,339,0 chrVI 83181 . A G 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=177;Dels=0.00;FS=3.030;HaplotypeScore=15.0025;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.482;QD=20.97;ReadPosRankSum=2.394;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3711,420,0 chrVI 83323 . C T 4138.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.6287;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.09;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4138,459,0 chrVI 83368 . C T 5675.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.88;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5675,612,0 chrVI 83410 . G A 5567.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=19.6076;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.36;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,243:249:99:5567,630,0 chrVI 83560 . T C 4984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=223;Dels=0.00;FS=9.161;HaplotypeScore=7.6587;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.866;QD=22.35;ReadPosRankSum=2.317;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:4984,552,0 chrVI 83611 . A G 5209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.523;QD=22.17;ReadPosRankSum=1.703;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5209,594,0 chrVI 83687 . G A 3130 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.74;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3163,348,0 chrVI 83894 . A G 1429 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.02;FS=0.000;HaplotypeScore=3.8928;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=16.24;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1462,162,0 chrVI 83900 . T C 1619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=4.276;HaplotypeScore=5.4558;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-1.161;QD=17.60;ReadPosRankSum=1.656;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1652,183,0 chrVI 84102 . C G 2349 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.97;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2382,267,0 chrVI 84193 . C T 3115 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.42;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3148,348,0 chrVI 84235 . A G 4023.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.46;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4023,441,0 chrVI 84382 . A G 3655.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.0121;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.42;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3655,408,0 chrVI 84403 . G T 4009.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.58;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4009,435,0 chrVI 84512 . T C 2648 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.9089;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.07;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2681,291,0 chrVI 84689 . T A 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=101;Dels=0.00;FS=3.416;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.978;QD=20.81;ReadPosRankSum=1.664;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2135,234,0 chrVI 84736 . A T 2175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=104;Dels=0.00;FS=3.027;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.485;QD=20.91;ReadPosRankSum=2.331;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2208,252,0 chrVI 85406 . T C 3014 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.49;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3047,339,0 chrVI 85688 . G C 3321.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.44;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:3321,369,0 chrVI 85718 . T A 3799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.299;QD=22.61;ReadPosRankSum=1.670;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3799,417,0 chrVI 85912 . C G 3144 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3177,360,0 chrVI 86322 . A G 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.489;QD=21.96;ReadPosRankSum=1.688;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3470,390,0 chrVI 86374 . A G 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=163;Dels=0.00;FS=3.430;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.329;QD=22.79;ReadPosRankSum=1.690;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3715,414,0 chrVI 86446 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-1.493;QD=20.49;ReadPosRankSum=-0.338;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3565,414,0 chrVI 86452 . G A 3517.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.0195;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.45;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3517,381,0 chrVI 86499 . G A 3109 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8299;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=19.80;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3142,342,0 chrVI 86631 . C T 4051.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.55;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4051,441,0 chrVI 86721 . G T 4000.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.9501;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.10;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4000,429,0 chrVI 87106 . G A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.9564;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.69;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3789,432,0 chrVI 87400 . C T 2620 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.83;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2653,288,0 chrVI 87438 . A G 2269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.049;QD=21.41;ReadPosRankSum=1.699;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2302,258,0 chrVI 87634 . G A 1851 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.85;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1884,207,0 chrVI 87650 . T C 1703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.153;DP=83;Dels=0.00;FS=7.084;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=1.500;QD=20.52;ReadPosRankSum=2.391;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1736,192,0 chrVI 88005 . G T 766 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=5.51;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:84:799,84,0 chrVI 88006 . T C 778 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.8487;MLEAC=2;MLEAF=1.00;MQ=40.73;MQ0=0;MQRankSum=-2.155;QD=5.48;ReadPosRankSum=2.380;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:90:811,90,0 chrVI 88009 . T C 760 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=152;Dels=0.00;FS=2.467;HaplotypeScore=5.9266;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=0;MQRankSum=-2.212;QD=5.00;ReadPosRankSum=2.914;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:87:793,87,0 chrVI 88398 . C A 2184 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.2810;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.84;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2217,243,0 chrVI 88711 . A T 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.643;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.939;QD=21.77;ReadPosRankSum=1.673;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2602,279,0 chrVI 88726 . G A 2207 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.53;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2240,243,0 chrVI 88828 . A G 3330.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=21.48;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3330,387,0 chrVI 88843 . T A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=20.50;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3342,363,0 chrVI 88861 . G T 3126 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.3655;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=19.18;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3159,345,0 chrVI 89012 . G A 3878.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.42;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3878,420,0 chrVI 89086 . A T 2426 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=16.62;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2459,270,0 chrVI 89089 . T A 2422 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=16.82;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2455,270,0 chrVI 89110 . C T 2658 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=15.64;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2691,294,0 chrVI 89149 . G C 2399 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=15.09;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2432,282,0 chrVI 89173 . C T 2852 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.6469;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=18.40;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2885,327,0 chrVI 89605 . T A 2097 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2130,231,0 chrVI 89727 . A G 2995 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3028,333,0 chrVI 90217 . A G 5207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=219;Dels=0.00;FS=5.275;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.846;QD=23.78;ReadPosRankSum=1.716;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:5207,594,0 chrVI 90244 . T C 5091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=228;Dels=0.00;FS=2.599;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.979;QD=22.33;ReadPosRankSum=2.385;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:2,225:228:99:5091,567,0 chrVI 90286 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.7599;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=18.00;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:3762,432,0 chrVI 90659 . C T 3925.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.7732;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.43;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3925,444,0 chrVI 90767 . C T 2742 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.45;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2775,300,0 chrVI 90772 . T G 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.8943;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=1.430;QD=18.49;ReadPosRankSum=1.647;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:2769,309,0 chrVI 90829 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.78;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2862,306,0 chrVI 90851 . C A 2832 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.98;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2865,318,0 chrVI 91116 . A G 3836.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.3386;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.43;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3836,423,0 chrVI 91475 . C T 4387.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.84;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4387,477,0 chrVI 91573 . C T 3865.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.4436;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.96;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3865,420,0 chrVI 91902 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.88;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3844,411,0 chrVI 92092 . G T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.53;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3272,366,0 chrVI 92105 . A G 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.402;DP=156;Dels=0.00;FS=13.274;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.337;QD=18.63;ReadPosRankSum=3.391;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:4,151:156:99:2940,321,0 chrVI 92119 . A G 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=144;Dels=0.00;FS=9.983;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-1.430;QD=15.84;ReadPosRankSum=2.909;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:2314,264,0 chrVI 92208 . A G 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.306;QD=21.09;ReadPosRankSum=1.681;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2922,324,0 chrVI 92642 . A G 2145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.626;QD=21.67;ReadPosRankSum=1.697;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2178,243,0 chrVI 94477 . A G 2531 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=19.03;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2564,294,0 chrVI 94480 . G A 2478 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=19.67;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2511,276,0 chrVI 94481 . T C 2410 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=127;Dels=0.00;FS=3.032;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;MQRankSum=0.707;QD=18.98;ReadPosRankSum=2.295;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2443,270,0 chrVI 94726 . A G 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.3796;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;MQRankSum=-0.136;QD=18.02;ReadPosRankSum=1.711;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3043,333,0 chrVI 94729 . C T 2848 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.0030;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=17.47;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:2881,321,0 chrVI 94981 . T C 1366 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=15.88;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1399,156,0 chrVI 95387 . G C 1419 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.74;MQ0=0;QD=19.44;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,69:73:99:1452,156,0 chrVI 95585 . T A 4508.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.1714;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.43;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4508,519,0 chrVI 95632 . G A 4959.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.92;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4959,534,0 chrVI 95849 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.86;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3565,396,0 chrVI 95926 . A C 1883 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.28;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1916,213,0 chrVI 96502 . T C 1747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=7.915;HaplotypeScore=7.4273;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.402;QD=17.65;ReadPosRankSum=1.697;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1780,204,0 chrVI 96678 . C T 2686 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.6201;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=23.16;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2719,303,0 chrVI 96802 . G A 2114 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.2434;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.52;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2147,237,0 chrVI 96814 . G A 1921 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.01;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,117:120:99:1954,222,0 chrVI 96832 . C T 2434 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.4744;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=18.58;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2467,276,0 chrVI 96955 . G T 3644.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.94;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3644,411,0 chrVI 96991 . C T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.2628;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.02;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3942,438,0 chrVI 97103 . G C 5934.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.74;SB=-3.229e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5934,663,0 chrVI 97235 . T C 4074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=3.055;HaplotypeScore=12.1109;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.326;QD=20.58;ReadPosRankSum=1.697;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4074,477,0 chrVI 97308 . G A 2930 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.4380;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=17.87;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2963,318,0 chrVI 97737 . C T 1298 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.18;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1331,153,0 chrVI 97944 . C T 4255.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.4403;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.90;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4255,468,0 chrVI 98071 . C T 2638 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.98;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2671,300,0 chrVI 98138 . G T 3557.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=20.92;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3557,384,0 chrVI 98152 . A T 3864.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.59;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3864,420,0 chrVI 98252 . G C 3184 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.5310;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.91;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3217,360,0 chrVI 98281 . C T 2835 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=23.05;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2868,324,0 chrVI 98282 . C A 2752 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.37;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2785,318,0 chrVI 98330 . G A 2075 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=21.61;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2108,231,0 chrVI 98578 . A T 406 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;QD=10.97;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:48:439,48,0 chrVI 98654 . C G 482 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;QD=11.21;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:60:515,60,0 chrVI 98744 . T C 608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;MQRankSum=-0.762;QD=12.16;ReadPosRankSum=1.525;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:72:641,72,0 chrVI 98747 . A T 687 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=12.96;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:78:720,78,0 chrVI 98785 . C T 1338 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=17.84;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1371,150,0 chrVI 98835 . T A 1674 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=21.74;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1707,186,0 chrVI 98867 . G A 1849 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=23.71;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1882,210,0 chrVI 99734 . A G 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=133;Dels=0.00;FS=10.018;HaplotypeScore=11.8495;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.997;QD=21.79;ReadPosRankSum=2.412;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2931,324,0 chrVI 99800 . C G 4181.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.23;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4181,456,0 chrVI 99817 . G A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.46;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3795,411,0 chrVI 100276 . G T 2346 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.40;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2379,270,0 chrVI 100367 . A G 2030 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;QD=21.15;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2063,228,0 chrVI 100382 . G A 1772 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=19.26;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1805,195,0 chrVI 100428 . T C 1929 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;QD=17.54;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1962,222,0 chrVI 100449 . C T 2167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=3.338;HaplotypeScore=3.4301;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;MQRankSum=-0.724;QD=19.52;ReadPosRankSum=1.354;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2200,246,0 chrVI 100481 . C G 2288 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=17.47;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2321,267,0 chrVI 100486 . G C 2098 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=16.65;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2131,246,0 chrVI 100526 . G A 1704 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=40.79;MQ0=0;QD=15.49;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1737,195,0 chrVI 100551 . C G 927 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=32.30;MQ0=0;QD=11.73;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:960,114,0 chrVI 100558 . A G 884 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;MQRankSum=-1.678;QD=13.81;ReadPosRankSum=1.678;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:917,105,0 chrVI 100560 . T C 851 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=13.51;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:884,102,0 chrVI 100561 . A G 810 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=12.86;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:843,99,0 chrVI 100566 . T C 985 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.08;MQ0=0;QD=14.28;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1018,114,0 chrVI 100594 . T G 1009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=5.619;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=0;MQRankSum=-1.565;QD=16.27;ReadPosRankSum=1.676;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1042,120,0 chrVI 100633 . A G 1440 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=20.28;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1473,165,0 chrVI 100677 . T C 1997 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=20.38;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2030,228,0 chrVI 100859 . G T 2160 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.98;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2193,240,0 chrVI 100932 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.35;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2782,318,0 chrVI 100946 . A C 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=126;Dels=0.00;FS=9.864;HaplotypeScore=4.5425;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.265;QD=21.01;ReadPosRankSum=1.705;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2680,309,0 chrVI 101264 . A T 1630 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.64;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1663,183,0 chrVI 101336 . A C 1622 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;QD=20.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1655,183,0 chrVI 101424 . T C 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;DP=26;Dels=0.00;FS=5.388;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=38.54;MQ0=0;MQRankSum=-2.878;QD=0.51;ReadPosRankSum=1.883;SB=-1.952e+00 GT:AD:DP:GQ:PL 0/1:22,4:26:43:43,0,300 chrVI 101439 . A G 241.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;DP=24;Dels=0.00;FS=14.409;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=39.23;MQ0=0;MQRankSum=3.341;QD=10.04;ReadPosRankSum=-1.777;SB=0.205 GT:AD:DP:GQ:PL 0/1:5,19:24:66:271,0,66 chrVI 101473 . C T 127.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.775;DP=21;Dels=0.00;FS=13.222;HaplotypeScore=22.5082;MLEAC=1;MLEAF=0.500;MQ=33.77;MQ0=0;MQRankSum=3.262;QD=6.05;ReadPosRankSum=1.775;SB=0.062 GT:AD:DP:GQ:PL 0/1:5,16:21:79:157,0,79 chrVI 101518 . G C 525 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;QD=13.82;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:63:558,63,0 chrVI 101826 . G A 3424.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.61;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3424,375,0 chrVI 101859 . G A 3593.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.04;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3593,393,0 chrVI 101913 . A G 2714 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=18.34;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:2747,321,0 chrVI 102071 . G A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.16;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3889,420,0 chrVI 102170 . A G 3889.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3889,438,0 chrVI 102345 . G A 4001.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.67;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4001,435,0 chrVI 102489 . T G 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.4015;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.173;QD=23.40;ReadPosRankSum=0.312;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3791,414,0 chrVI 102528 . T C 3001 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.87;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3034,342,0 chrVI 102609 . G A 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.133;DP=143;Dels=0.00;FS=3.041;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;MQRankSum=0.545;QD=20.07;ReadPosRankSum=0.884;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2903,313,0 chrVI 102624 . C T 2881 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=19.87;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2914,318,0 chrVI 102635 . G A 2919 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=19.59;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2952,318,0 chrVI 102744 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.08;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2925,315,0 chrVI 102816 . G A 5106.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.32;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5106,555,0 chrVI 102880 . A T 4385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=217;Dels=0.00;FS=9.705;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.608;QD=20.21;ReadPosRankSum=2.427;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:4385,495,0 chrVI 102885 . A G 4273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=208;Dels=0.00;FS=5.194;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=-0.144;QD=20.54;ReadPosRankSum=1.715;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,204:208:99:4273,480,0 chrVI 102899 . G A 4235.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=19.61;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4235,462,0 chrVI 102960 . T C 4395.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.33;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4395,492,0 chrVI 103002 . A G 3615.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.02;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3615,399,0 chrVI 103192 . A G 1076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.777;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-0.542;QD=16.30;ReadPosRankSum=2.375;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1109,126,0 chrVI 103369 . G A 1742 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=20.49;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1775,192,0 chrVI 103374 . A G 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=10.160;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;MQRankSum=-1.732;QD=18.23;ReadPosRankSum=1.690;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1546,180,0 chrVI 103388 . T A 1097 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=16.13;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1130,123,0 chrVI 103389 . T G 1057 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=15.78;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1090,120,0 chrVI 103493 . T C 4149.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=21.28;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4149,474,0 chrVI 103509 . C T 4314.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=20.94;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4314,480,0 chrVI 103548 . G A 3124 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=18.06;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3157,348,0 chrVI 103553 . G A 3041 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=18.21;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3074,342,0 chrVI 103689 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=4.563;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=1.647;QD=20.86;ReadPosRankSum=-0.202;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3400,390,0 chrVI 103749 . G C 2100 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.59;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2133,240,0 chrVI 103824 . T C 1503 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=18.56;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1536,183,0 chrVI 103865 . A C 1371 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=15.40;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1404,162,0 chrVI 103879 . A G 1262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.814;QD=15.20;ReadPosRankSum=1.690;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1295,141,0 chrVI 103933 . A G 266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.174;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=15.8424;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.727;QD=8.58;ReadPosRankSum=1.621;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:33:299,33,0 chrVI 104017 . C T 2260 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=23.79;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2293,249,0 chrVI 104113 . T C 1726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.066;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.855;QD=21.85;ReadPosRankSum=-1.294;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1759,178,0 chrVI 104192 . G A 2383 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.7591;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=21.66;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2416,267,0 chrVI 104220 . G A 2388 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.23;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2421,273,0 chrVI 104240 . C T 2929 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.40;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2962,318,0 chrVI 104265 . C T 2567 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.3808;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=16.56;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2600,300,0 chrVI 104388 . C T 1353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.4839;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.545;QD=18.28;ReadPosRankSum=0.609;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1386,150,0 chrVI 104884 . G A 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=184;Dels=0.00;FS=4.701;HaplotypeScore=10.6454;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.805;QD=21.72;ReadPosRankSum=0.823;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3997,456,0 chrVI 104938 . T C 4495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.1896;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.327;QD=21.93;ReadPosRankSum=1.681;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4495,501,0 chrVI 105370 . A G 6514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=315;Dels=0.00;FS=7.006;HaplotypeScore=21.9461;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.443;QD=20.68;ReadPosRankSum=2.395;SB=-3.474e+03 GT:AD:DP:GQ:PL 1/1:2,311:315:99:6514,756,0 chrVI 105427 . A G 6468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=23.4539;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.330;QD=19.54;ReadPosRankSum=1.701;SB=-3.287e+03 GT:AD:DP:GQ:PL 1/1:1,330:331:99:6468,735,0 chrVI 105639 . C T 4655.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.24;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:4655,522,0 chrVI 105673 . G A 3949.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=7.2935;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=17.63;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:3949,453,0 chrVI 105691 . G A 3696.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.5181;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=17.03;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:3696,408,0 chrVI 105822 . C T 2559 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=17.5998;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=16.73;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2592,288,0 chrVI 105937 . C T 3151 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=20.87;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3184,345,0 chrVI 106096 . G A 3295.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.3841;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.72;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3295,360,0 chrVI 106194 . A G 3740.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.5742;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.97;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3740,414,0 chrVI 106291 . G T 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;DP=112;Dels=0.00;FS=140.132;HaplotypeScore=9.7451;MLEAC=1;MLEAF=0.500;MQ=55.70;MQ0=0;MQRankSum=-0.096;QD=0.61;ReadPosRankSum=-7.553;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:69,41:112:98:98,0,479 chrVI 106489 . A G 2206 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.3464;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=17.79;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2239,255,0 chrVI 106494 . C G 2155 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=16.97;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2188,249,0 chrVI 106583 . A G 2880 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.86;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2913,315,0 chrVI 106692 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.4595;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.31;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3431,399,0 chrVI 106816 . T G 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.188;DP=131;Dels=0.00;FS=14.277;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-1.962;QD=19.23;ReadPosRankSum=3.202;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:4,126:131:99:2552,294,0 chrVI 106837 . C T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=2;QD=22.20;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3330,363,0 chrVI 106991 . A C 1998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=95;Dels=0.00;FS=2.948;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.557;QD=21.03;ReadPosRankSum=2.398;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2031,237,0 chrVI 107084 . G A 1553 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=18.06;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1586,174,0 chrVI 107085 . T C 1567 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=19.11;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1600,177,0 chrVI 107101 . T A 1947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=108;Dels=0.00;FS=14.941;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=-1.309;QD=18.03;ReadPosRankSum=2.935;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:3,105:108:99:1980,216,0 chrVI 107363 . G A 3154 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.5403;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.69;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3187,345,0 chrVI 107391 . C A 2736 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5944;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.54;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2769,300,0 chrVI 107432 . T C 1972 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=18.43;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2005,231,0 chrVI 107527 . A G 2198 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.45;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2231,246,0 chrVI 107738 . C T 1241 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.40;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1274,138,0 chrVI 107821 . G A 173.04 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509;DP=97;Dels=0.00;FS=4.955;HaplotypeScore=2.7736;MLEAC=1;MLEAF=0.500;MQ=38.78;MQ0=0;MQRankSum=0.793;QD=1.78;ReadPosRankSum=-2.809;SB=-1.304e+01 GT:AD:DP:GQ:PL 0/1:82,15:97:18:203,0,18 chrVI 107824 . T C 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DP=98;Dels=0.00;FS=3.157;HaplotypeScore=2.7736;MLEAC=1;MLEAF=0.500;MQ=38.33;MQ0=0;MQRankSum=-0.651;QD=0.11;ReadPosRankSum=3.044;SB=-3.860e+02 GT:AD:DP:GQ:PL 0/1:13,84:98:40:40,0,207 chrVI 107825 . G A 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;DP=95;Dels=0.00;FS=6.716;HaplotypeScore=1.9849;MLEAC=1;MLEAF=0.500;MQ=37.83;MQ0=0;MQRankSum=-1.048;QD=0.29;ReadPosRankSum=-2.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,9:95:58:58,0,489 chrVI 107844 . G A 1261 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.21;MQ0=0;QD=12.24;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1294,144,0 chrVI 111687 . A G 2922 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.8957;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.95;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2955,330,0 chrVI 113156 . C T 3184 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3217,357,0 chrVI 114692 . A G 5498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-0.042;QD=22.17;ReadPosRankSum=1.704;SB=-3.140e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:5498,609,0 chrVI 114714 . C T 4763.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=3.2560;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.55;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4763,534,0 chrVI 114918 . C T 2788 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.61;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2821,324,0 chrVI 115088 . T C 4545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=2.190;QD=23.92;ReadPosRankSum=2.398;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4545,501,0 chrVI 115119 . T C 3296.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=18.73;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3296,375,0 chrVI 115132 . A G 2796 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=18.04;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2829,330,0 chrVI 115181 . G A 1257 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.04;FS=0.000;HaplotypeScore=88.1613;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=6.98;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,170:173:99:1290,141,0 chrVI 115494 . C G 7505.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=378;Dels=0.00;FS=5.299;HaplotypeScore=25.6326;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.317;QD=19.85;ReadPosRankSum=-0.083;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:1,375:378:99:7505,844,0 chrVI 116573 . G A 5066.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.47;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5066,579,0 chrVI 116763 . A T 3467.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.0204;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.27;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3467,396,0 chrVI 116839 . G C 2324 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.78;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2357,261,0 chrVI 117122 . G A 1429 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1462,165,0 chrVI 117205 . C G 1510 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.57;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1543,174,0 chrVI 118097 . C T 3116 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.43;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3149,339,0 chrVI 118499 . T C 1838 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.98;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1871,210,0 chrVI 118563 . C A 1427 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0143;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.65;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1460,159,0 chrVI 119140 . C T 2365 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=22.31;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2398,270,0 chrVI 119147 . T C 2159 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.96;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2192,249,0 chrVI 119224 . G C 2426 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.66;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2459,270,0 chrVI 119266 . C A 1713 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=14.52;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1746,198,0 chrVI 119276 . A G 1479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.322;DP=118;Dels=0.00;FS=15.077;HaplotypeScore=84.8092;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;MQRankSum=-2.662;QD=12.53;ReadPosRankSum=3.337;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:4,114:118:99:1512,171,0 chrVI 119328 . T C 2145 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=15.89;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2178,252,0 chrVI 119659 . C T 3896.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3896,429,0 chrVI 120204 . T C 2446 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.1129;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.24;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2479,279,0 chrVI 120241 . T A 2466 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.9077;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.02;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2499,273,0 chrVI 120366 . G T 2207 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2240,243,0 chrVI 120550 . C T 2665 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2698,294,0 chrVI 120772 . G C 2663 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,113:117:99:2696,294,0 chrVI 122143 . C T 2116 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2149,237,0 chrVI 122197 . A T 2018 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2051,225,0 chrVI 122716 . C T 2704 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2737,300,0 chrVI 123067 . G T 2656 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.59;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2689,300,0 chrVI 123199 . T C 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=125;Dels=0.00;FS=2.981;HaplotypeScore=8.1969;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.010;QD=20.23;ReadPosRankSum=2.350;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:2,121:125:99:2562,291,0 chrVI 123420 . A C 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=172;Dels=0.00;FS=8.392;HaplotypeScore=16.0208;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.022;QD=21.48;ReadPosRankSum=2.406;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:2,168:172:99:3695,432,0 chrVI 123774 . A G 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.6935;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.519;QD=21.37;ReadPosRankSum=1.697;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4168,477,0 chrVI 123823 . C A 3826.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3826,420,0 chrVI 124253 . T C 3318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.625;QD=22.88;ReadPosRankSum=1.708;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3318,366,0 chrVI 124660 . G T 4127.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.3808;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4127,444,0 chrVI 124909 . C G 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.081;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.8653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.186;QD=21.90;ReadPosRankSum=-0.157;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3657,376,0 chrVI 125664 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.67;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2894,318,0 chrVI 126783 . G A 2654 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2687,285,0 chrVI 127102 . G A 2330 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2363,267,0 chrVI 127421 . G A 2706 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2739,306,0 chrVI 127630 . A G 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=4.620;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.107;QD=24.17;ReadPosRankSum=1.671;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2788,312,0 chrVI 127726 . T C 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=145;Dels=0.00;FS=6.111;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.229;QD=22.90;ReadPosRankSum=2.365;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3321,375,0 chrVI 127808 . G A 3969.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.63;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3969,423,0 chrVI 127945 . C T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=10.9912;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.08;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3669,393,0 chrVI 128175 . T C 3993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=181;Dels=0.00;FS=3.313;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.537;QD=22.06;ReadPosRankSum=1.693;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:3993,456,0 chrVI 128252 . C T 3977.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.7797;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.99;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3977,438,0 chrVI 128350 . T A 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=152;Dels=0.00;FS=5.882;HaplotypeScore=16.5380;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.126;QD=22.51;ReadPosRankSum=2.861;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3422,378,0 chrVI 128570 . A G 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.9328;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.054;QD=21.64;ReadPosRankSum=1.707;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:3063,345,0 chrVI 128740 . T C 4117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=181;Dels=0.00;FS=2.873;HaplotypeScore=16.0018;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.088;QD=22.75;ReadPosRankSum=2.422;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4117,468,0 chrVI 128803 . A G 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=3.062;HaplotypeScore=8.4120;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-0.949;QD=22.43;ReadPosRankSum=1.711;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:1,167:171:99:3835,432,0 chrVI 128823 . G A 3872.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.64;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3872,420,0 chrVI 129059 . G T 2302 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.55;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2335,264,0 chrVI 129074 . C T 2449 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.11;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2482,270,0 chrVI 129133 . T C 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=3.691;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.922;QD=20.29;ReadPosRankSum=1.704;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2590,294,0 chrVI 129460 . T C 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=144;Dels=0.00;FS=7.647;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;MQRankSum=-0.555;QD=20.80;ReadPosRankSum=2.381;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3028,351,0 chrVI 129547 . G A 2760 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2793,300,0 chrVI 129805 . G A 2984 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.01;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3017,330,0 chrVI 130058 . T A 2919 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5007;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.53;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2952,318,0 chrVI 130188 . C T 2500 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.4501;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.37;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2533,291,0 chrVI 130967 . T C 3720.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.4033;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.88;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3720,411,0 chrVI 130995 . T C 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=125;Dels=0.00;FS=14.200;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.697;QD=20.26;ReadPosRankSum=2.368;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:2,119:125:99:2565,285,0 chrVI 131200 . C T 1683 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.74;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1716,189,0 chrVI 131317 . T A 1704 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=22.42;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1737,201,0 chrVI 131646 . T C 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=143;Dels=0.00;FS=7.974;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.528;QD=22.38;ReadPosRankSum=2.398;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3233,360,0 chrVI 131953 . A G 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.485;QD=21.68;ReadPosRankSum=1.620;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3339,384,0 chrVI 132559 . A G 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=141;Dels=0.00;FS=3.041;HaplotypeScore=8.9313;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.872;QD=19.27;ReadPosRankSum=1.708;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2750,315,0 chrVI 132667 . G A 2705 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.6115;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2738,300,0 chrVI 132951 . A G 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=87;Dels=0.00;FS=4.030;HaplotypeScore=4.2886;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.967;QD=22.84;ReadPosRankSum=1.692;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:2020,225,0 chrVI 133255 . A G 3722.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3722,414,0 chrVI 133936 . G C 2549 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.79;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2582,288,0 chrVI 134104 . A T 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.438;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-0.974;QD=23.81;ReadPosRankSum=1.705;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3081,330,0 chrVI 134123 . T G 2837 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.88;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2870,318,0 chrVI 134248 . G A 2429 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.1647;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.81;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2462,267,0 chrVI 134670 . C T 3293.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3293,360,0 chrVI 134777 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.5074;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.99;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2584,279,0 chrVI 134989 . C A 3849.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.6130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3849,420,0 chrVI 135481 . G A 2329 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2362,255,0 chrVI 135874 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2536,276,0 chrVI 135975 . T A 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.768;QD=22.40;ReadPosRankSum=1.661;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2206,237,0 chrVI 135976 . T A 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-1.131;QD=22.06;ReadPosRankSum=1.697;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2195,237,0 chrVI 136585 . T C 3199 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3232,357,0 chrVI 137019 . T C 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=169;Dels=0.00;FS=7.790;HaplotypeScore=12.1595;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.088;QD=20.93;ReadPosRankSum=2.390;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:2,164:169:99:3537,399,0 chrVI 137241 . C G 2476 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.7598;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.93;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2509,282,0 chrVI 137294 . C A 2315 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.84;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2348,261,0 chrVI 137349 . A C 2094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=98;Dels=0.00;FS=3.285;HaplotypeScore=11.0625;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=0.353;QD=21.37;ReadPosRankSum=1.661;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2127,240,0 chrVI 137600 . T C 1890 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=22.24;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1923,210,0 chrVI 137601 . A C 1906 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=22.42;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1939,213,0 chrVI 137634 . C A 1721 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.78;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1754,198,0 chrVI 137770 . A G 149.06 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;QD=7.85;SB=-2.207e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:21:182,21,0 chrVI 137780 . A G 70.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;MQRankSum=-1.736;QD=4.70;ReadPosRankSum=1.504;SB=-2.752e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:12:103,12,0 chrVI 137783 . C T 71.51 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.18;MQ0=0;QD=5.50;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:104,12,0 chrVI 144890 . G A 444 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=11.68;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:54:477,54,0 chrVI 144966 . G A 1141 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.82;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1174,135,0 chrVI 145086 . T C 2385 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=22.08;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2418,270,0 chrVI 145110 . A G 2737 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.62;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2770,315,0 chrVI 145543 . C T 2795 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2828,321,0 chrVI 145894 . G A 3910.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.5204;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.60;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3910,420,0 chrVI 146049 . T C 3336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=157;Dels=0.00;FS=4.771;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=1.665;QD=21.25;ReadPosRankSum=1.688;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3336,375,0 chrVI 146074 . C T 3360.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.82;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3360,360,0 chrVI 146334 . G A 2302 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=18.42;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2335,261,0 chrVI 146341 . C T 2356 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=18.12;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2389,264,0 chrVI 146469 . A G 3152 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.5971;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.44;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3185,354,0 chrVI 146528 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=3.007;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=0.827;QD=21.38;ReadPosRankSum=2.289;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3271,369,0 chrVI 146545 . A G 3209 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=21.25;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3242,366,0 chrVI 146869 . G C 2783 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=21.91;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2816,312,0 chrVI 146887 . G A 2313 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=19.94;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2346,255,0 chrVI 147065 . A T 1454 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.48;MQ0=0;QD=13.59;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1487,162,0 chrVI 147067 . A T 1357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=4.191;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.88;MQ0=0;MQRankSum=-1.567;QD=12.92;ReadPosRankSum=1.699;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1390,159,0 chrVI 147109 . G A 1218 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.72;MQ0=0;QD=10.59;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1251,141,0 chrVI 147121 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=11.37;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1534,168,0 chrVI 147361 . G T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.24;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3356,381,0 chrVI 147376 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.7756;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.18;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3453,378,0 chrVI 147466 . G A 4200.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=22.11;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4200,453,0 chrVI 147471 . A T 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=187;Dels=0.00;FS=11.834;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-0.737;QD=21.42;ReadPosRankSum=2.963;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:4006,435,0 chrVI 147481 . G A 3512.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.07;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3512,405,0 chrVI 147641 . G A 4637.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.96;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4637,498,0 chrVI 147986 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.86;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2913,318,0 chrVI 148368 . C G 1676 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.05;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1709,183,0 chrVI 148492 . A G 124.13 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=12.41;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:157,18,0 chrVI 148496 . C T 136.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=15.13;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:169,18,0 chrVI 148509 . C T 123.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=13.68;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:156,18,0 chrVI 148539 . A T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=7.26;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:53,6,0 chrVI 148623 . G A 46.97 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.76;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:79,9,0 chrVI 148661 . G A 243 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=26.7140;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.84;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,31:31:30:276,30,0 chrVI 148676 . A G 239 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.46;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:30:272,30,0 chrVI 148687 . A G 296 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.22;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:36:329,36,0 chrVI 148693 . T C 288 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.29;MQ0=0;QD=7.02;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:36:321,36,0 chrVI 148700 . C T 415 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.98;MQ0=0;QD=9.43;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:51:448,51,0 chrVI 148729 . C G 492 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.50;MQ0=0;QD=11.44;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:57:525,57,0 chrVI 148751 . G A 393 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=10.62;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:45:426,45,0 chrVI 148756 . T C 441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-1.733;QD=10.50;ReadPosRankSum=1.650;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:54:474,54,0 chrVI 148828 . C T 1064 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=24.74;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1097,117,0 chrVI 148875 . T C 1241 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;QD=21.77;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1274,144,0 chrVI 148977 . T C 963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=62;Dels=0.00;FS=2.620;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=1.284;QD=15.53;ReadPosRankSum=2.785;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:3,58:62:99:996,111,0 chrVI 148978 . T C 925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.086;DP=62;Dels=0.00;FS=2.668;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-0.668;QD=14.92;ReadPosRankSum=2.369;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:2,59:62:99:958,108,0 chrVI 149084 . C T 1857 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1890,207,0 chrVI 149493 . A G 3914.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.99;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3914,435,0 chrVI 149514 . G A 3827.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.12;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3827,411,0 chrVI 149532 . A G 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=153;Dels=0.00;FS=5.250;HaplotypeScore=7.6563;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.411;QD=18.59;ReadPosRankSum=3.192;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:4,147:153:99:2877,321,0 chrVI 149607 . T G 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=137;Dels=0.00;FS=3.315;HaplotypeScore=11.3516;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-1.550;QD=20.52;ReadPosRankSum=1.706;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,133:137:99:2844,333,0 chrVI 149844 . T A 2100 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.75;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2133,234,0 chrVI 149865 . T A 2105 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=19.14;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2138,237,0 chrVI 150247 . T C 3189 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3222,357,0 chrVI 150453 . T C 1747 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1780,207,0 chrVI 150723 . C A 2137 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2170,240,0 chrVI 151255 . T C 3514.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.97;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3514,381,0 chrVI 151362 . G A 3145 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.3663;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.46;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3178,342,0 chrVI 151899 . A G 4989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=231;Dels=0.00;FS=6.078;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.113;QD=21.60;ReadPosRankSum=2.396;SB=-2.746e+03 GT:AD:DP:GQ:PL 1/1:2,228:231:99:4989,576,0 chrVI 152014 . G A 3427.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.4080;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.77;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3427,393,0 chrVI 152163 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.35;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3331,378,0 chrVI 152337 . G A 2132 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.68;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2165,240,0 chrVI 152660 . G A 3166 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9978;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3199,348,0 chrVI 152714 . A G 3035 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.99;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3068,357,0 chrVI 152837 . G A 4762.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.6862;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.81;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4762,522,0 chrVI 153323 . T A 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.999;DP=158;Dels=0.00;FS=2.954;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.054;QD=22.08;ReadPosRankSum=1.096;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3488,365,0 chrVI 153342 . A G 3320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=166;Dels=0.00;FS=11.360;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.073;QD=20.00;ReadPosRankSum=2.885;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3320,375,0 chrVI 153360 . A G 3282.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.19;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3282,372,0 chrVI 153974 . G A 2533 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.09;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2566,276,0 chrVI 153977 . T C 2388 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=17.69;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2421,273,0 chrVI 154568 . A G 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=11.461;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.601;QD=23.38;ReadPosRankSum=1.661;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2348,261,0 chrVI 154845 . A G 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.660;QD=19.93;ReadPosRankSum=1.707;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:2843,324,0 chrVI 154989 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=24.77;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2857,309,0 chrVI 155037 . T G 2321 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.53;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2354,261,0 chrVI 155068 . T C 1921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=96;Dels=0.00;FS=13.391;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=1.200;QD=20.01;ReadPosRankSum=1.095;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:1954,219,0 chrVI 155127 . G T 2478 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.3684;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.93;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2511,273,0 chrVI 155140 . G A 2529 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.80;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2562,285,0 chrVI 155178 . C T 2873 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.4426;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.10;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2906,321,0 chrVI 155228 . C A 2756 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.87;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2789,303,0 chrVI 155241 . T G 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.247;QD=20.48;ReadPosRankSum=1.703;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2491,288,0 chrVI 155336 . G A 3143 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.94;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3176,342,0 chrVI 155681 . G T 2596 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.19;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2629,288,0 chrVI 156120 . A G 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=112;Dels=0.00;FS=8.098;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.208;QD=21.12;ReadPosRankSum=2.405;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2398,279,0 chrVI 156375 . T C 2672 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.5750;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,115:119:99:2705,306,0 chrVI 156651 . G A 3415.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.2735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3415,369,0 chrVI 156697 . C T 3007 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.13;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3040,330,0 chrVI 156765 . C T 4033.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.58;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4033,441,0 chrVI 156770 . A G 3906.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.42;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3906,441,0 chrVI 156786 . A G 4102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.160;DP=230;Dels=0.00;FS=3.226;HaplotypeScore=12.3304;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.465;QD=17.83;ReadPosRankSum=0.237;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:1,226:230:99:4102,462,0 chrVI 156928 . C T 4455.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.9667;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.96;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4455,489,0 chrVI 157162 . G A 4579.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.0006;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.56;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4579,510,0 chrVI 157270 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.6976;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.26;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3338,363,0 chrVI 157416 . T C 2730 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2763,306,0 chrVI 157867 . G A 973 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.52;MQ0=0;QD=12.16;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1006,111,0 chrVI 157872 . G A 923 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.87;MQ0=0;QD=11.12;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:956,105,0 chrVI 157884 . T A 766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=4.717;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=0;MQRankSum=-0.087;QD=9.57;ReadPosRankSum=1.689;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:90:799,90,0 chrVI 157913 . G A 739 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.74;MQ0=0;QD=8.90;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:87:772,87,0 chrVI 158024 . T A 1191 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=19.52;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1224,138,0 chrVI 158037 . G A 1365 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=20.07;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1398,159,0 chrVI 158046 . G C 1487 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=20.09;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1520,177,0 chrVI 158080 . T C 1599 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.28;MQ0=0;QD=17.01;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1632,195,0 chrVI 158086 . T C 1775 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=0;QD=19.29;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1808,207,0 chrVI 158168 . G A 1893 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.58;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1926,219,0 chrVI 158256 . A T 1830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=4.087;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=0.084;QD=22.32;ReadPosRankSum=1.648;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1863,204,0 chrVI 158283 . A G 1413 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=16.82;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1446,165,0 chrVI 158289 . G A 1287 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.217;DP=85;Dels=0.00;FS=14.637;HaplotypeScore=3.7644;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;MQRankSum=0.024;QD=15.14;ReadPosRankSum=2.386;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:3,81:85:99:1320,153,0 chrVI 158290 . G A 1439 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.7644;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=16.93;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1472,162,0 chrVI 158337 . A G 1533 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=16.31;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1566,177,0 chrVI 158348 . T G 1664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=0.332;QD=16.81;ReadPosRankSum=1.697;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1697,189,0 chrVI 158375 . T C 2170 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=19.91;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2203,243,0 chrVI 158505 . A G 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4989;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=0.754;QD=22.20;ReadPosRankSum=1.676;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2786,318,0 chrVI 158535 . G A 2727 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=24.35;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2760,297,0 chrVI 158652 . G T 3042 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.22;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3075,327,0 chrVI 158715 . A G 2384 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=18.20;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2417,270,0 chrVI 158716 . A G 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=132;Dels=0.00;FS=7.843;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-0.274;QD=18.46;ReadPosRankSum=2.374;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:2,128:132:99:2470,273,0 chrVI 158744 . T A 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=145;Dels=0.00;FS=2.844;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.568;QD=19.40;ReadPosRankSum=2.399;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2846,315,0 chrVI 158840 . G T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.33;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3439,384,0 chrVI 159117 . T A 1495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=79;Dels=0.00;FS=3.791;HaplotypeScore=3.0854;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.206;QD=18.92;ReadPosRankSum=1.601;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1528,174,0 chrVI 159165 . G A 2678 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.91;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2711,297,0 chrVI 159235 . G C 2256 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.69;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2289,249,0 chrVI 159554 . A G 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.745;DP=138;Dels=0.00;FS=9.320;HaplotypeScore=11.2910;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.730;QD=22.83;ReadPosRankSum=2.905;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3184,360,0 chrVI 159623 . G A 3731.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3731,405,0 chrVI 159710 . G A 3367.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.4521;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.18;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3367,366,0 chrVI 159955 . T G 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=143;Dels=0.00;FS=3.167;HaplotypeScore=7.8794;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.486;QD=22.22;ReadPosRankSum=1.708;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3210,369,0 chrVI 160138 . T A 3081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.3539;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.198;QD=22.01;ReadPosRankSum=1.683;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3114,351,0 chrVI 160515 . G A 3317.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=19.5341;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=20.10;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3317,363,0 chrVI 160603 . A C 3358.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.48;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3358,381,0 chrVI 160696 . G A 4158.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.8582;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.72;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4158,456,0 chrVI 161044 . G C 4040.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.35;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4040,462,0 chrVI 161071 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.22;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3511,384,0 chrVI 161110 . G A 2533 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.84;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2566,273,0 chrVI 161152 . T C 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=105;Dels=0.00;FS=9.250;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-1.665;QD=21.11;ReadPosRankSum=3.372;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:4,100:105:99:2250,258,0 chrVI 161167 . T C 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=126;Dels=0.00;FS=3.011;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.013;QD=20.67;ReadPosRankSum=2.371;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2638,306,0 chrVI 161436 . T C 1683 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.78;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1716,192,0 chrVI 161506 . A G 954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.2725;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.709;QD=21.68;ReadPosRankSum=1.496;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,43:44:99:987,114,0 chrVI 161565 . A G 429 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.16;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:51:462,51,0 chrVI 161636 . A G 931 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=6.6104;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=23.27;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:99:964,108,0 chrVI 161858 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=22.33;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1730,195,0 chrVI 161877 . G A 1522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=76;Dels=0.00;FS=6.314;HaplotypeScore=59.3233;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;MQRankSum=0.114;QD=20.03;ReadPosRankSum=2.320;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1555,155,0 chrVI 161967 . G C 1682.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.873;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.6257;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=1;MQRankSum=3.041;QD=15.87;ReadPosRankSum=1.515;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:10,95:106:23:1715,23,0 chrVI 162051 . A G 1819 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=19.35;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1852,210,0 chrVI 162111 . A G 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.370;DP=83;Dels=0.00;FS=6.152;HaplotypeScore=11.4883;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;MQRankSum=2.050;QD=19.92;ReadPosRankSum=2.618;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:3,79:83:99:1686,123,0 chrVI 162183 . A T 1965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=3.051;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=0.014;QD=22.33;ReadPosRankSum=2.394;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1998,213,0 chrVI 162197 . T C 1724 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=20.52;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1757,192,0 chrVI 162211 . T A 1832 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=21.30;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1865,201,0 chrVI 162392 . T C 2539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=1.059;QD=21.89;ReadPosRankSum=2.407;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2572,294,0 chrVI 162417 . A G 2755 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=130.9943;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=19.82;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2788,306,0 chrVI 162613 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.31;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4010,432,0 chrVI 162872 . A G 4059.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4059,444,0 chrVI 163435 . A G 4048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=3.277;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=1.152;QD=21.88;ReadPosRankSum=1.713;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4048,459,0 chrVI 163447 . A G 4050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=190;Dels=0.00;FS=3.528;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=0.695;QD=21.32;ReadPosRankSum=1.714;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,186:190:99:4050,450,0 chrVI 163549 . G A 3008 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.89;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3041,345,0 chrVI 164557 . A G 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.313;DP=144;Dels=0.00;FS=8.406;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.359;QD=20.75;ReadPosRankSum=3.398;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:4,140:144:99:3021,348,0 chrVI 164883 . G T 2336 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=14.3272;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.24;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2369,258,0 chrVI 165111 . A G 2658 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.95;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2691,300,0 chrVI 166074 . A G 3455.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.1362;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3455,405,0 chrVI 166669 . C T 1846 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1879,201,0 chrVI 167198 . G A 2915 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.25;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2948,321,0 chrVI 167265 . C T 2875 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.19;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2908,321,0 chrVI 167366 . C T 1653 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=17.22;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1686,189,0 chrVI 167402 . C T 806 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=0;QD=14.14;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:93:839,93,0 chrVI 167403 . C G 762 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;QD=13.14;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:90:795,90,0 chrVI 167410 . A G 678 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.77;MQ0=0;QD=12.56;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:81:711,81,0 chrVI 167434 . C T 723 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=15.72;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:84:756,84,0 chrVI 167598 . T C 467 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=17.30;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:57:500,57,0 chrVI 167615 . G A 318 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=15.90;SB=-7.578e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:39:351,39,0 chrVI 167647 . A G 275 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;QD=16.18;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:36:308,36,0 chrVI 167682 . G C 171.03 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=0;QD=14.25;SB=-2.603e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:204,24,0 chrVI 167690 . T G 170.03 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;QD=17.00;SB=-2.802e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:24:203,24,0 chrVI 167705 . A G 155.06 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=22.15;SB=-2.794e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:21:188,21,0 chrVI 167776 . T C 243 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;MQRankSum=-1.734;QD=12.79;ReadPosRankSum=1.552;SB=-1.516e-02 GT:AD:DP:GQ:PL 1/1:1,18:19:30:276,30,0 chrVI 167782 . T C 270 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=11.74;SB=-8.696e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:36:303,36,0 chrVI 168102 . T A 2120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1570;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=0.661;QD=21.86;ReadPosRankSum=1.625;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2153,237,0 chrVI 168104 . T C 2067 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=22.23;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2100,243,0 chrVI 168202 . T C 4049.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=21.77;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4049,456,0 chrVI 168223 . C T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.27;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:3727,405,0 chrVI 168241 . T C 4132.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=18.04;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4132,468,0 chrVI 168408 . G C 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.424;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.7902;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;MQRankSum=-0.558;QD=14.50;ReadPosRankSum=0.962;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:2657,306,0 chrVI 168422 . C T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.9949;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=19.60;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3606,399,0 chrVI 168572 . A G 4695.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.4752;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=22.25;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4695,516,0 chrVI 168596 . C T 4342.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=20.29;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,210:214:99:4342,498,0 chrVI 168728 . A G 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.845;QD=21.27;ReadPosRankSum=1.618;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2607,291,0 chrVI 168908 . G A 1050 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=15.22;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1083,120,0 chrVI 169392 . A G 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.402;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=0.247;QD=18.05;ReadPosRankSum=1.633;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1928,219,0 chrVI 169591 . T C 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=1.026;QD=22.49;ReadPosRankSum=1.700;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2484,282,0 chrVI 169635 . A G 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=150;Dels=0.00;FS=6.051;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=0.346;QD=19.95;ReadPosRankSum=1.637;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,144:150:99:3025,330,0 chrVI 169649 . T G 2816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=0;MQRankSum=-1.174;QD=18.90;ReadPosRankSum=1.709;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2849,330,0 chrVI 169872 . A G 6254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=276;Dels=0.00;FS=3.869;HaplotypeScore=15.2186;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.920;QD=22.66;ReadPosRankSum=1.719;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:1,272:276:99:6254,684,0 chrVI 169900 . A C 5395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=267;Dels=0.00;FS=8.783;HaplotypeScore=17.5201;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=0.089;QD=20.21;ReadPosRankSum=2.412;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:2,261:267:99:5395,621,0 chrVI 169942 . T C 5128.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.46;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5128,579,0 chrVI 170423 . T C 3141 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3174,345,0 chrVI 170473 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3138,342,0 chrVI 170689 . A C 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=3.046;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.986;QD=22.47;ReadPosRankSum=2.368;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2752,306,0 chrVI 170794 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.95;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2404,270,0 chrVI 171023 . A G 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=146;Dels=0.00;FS=3.228;HaplotypeScore=7.4031;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.957;QD=23.78;ReadPosRankSum=1.659;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,142:146:99:3472,384,0 chrVI 171103 . G T 2522 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.52;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2555,279,0 chrVI 171241 . C T 2630 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=13.0204;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.74;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2663,300,0 chrVI 171355 . G A 2253 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.09;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2286,243,0 chrVI 171376 . A G 2329 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.77;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2362,261,0 chrVI 171434 . C T 2294 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.17;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2327,249,0 chrVI 171501 . C T 2206 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.05;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2239,243,0 chrVI 172334 . G C 3573.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.47;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3573,393,0 chrVI 172581 . C T 2688 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=23.58;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2721,294,0 chrVI 172598 . A T 2512 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=20.10;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2545,276,0 chrVI 172612 . A G 2601 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.48;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2634,288,0 chrVI 173376 . G A 2519 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=19.99;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2552,279,0 chrVI 173398 . C T 2743 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.94;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2776,300,0 chrVI 173500 . C T 3452.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.64;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3452,375,0 chrVI 173599 . C T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.42;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3543,399,0 chrVI 173765 . A G 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.030;QD=17.49;ReadPosRankSum=1.709;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:2744,300,0 chrVI 173916 . T A 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=104;Dels=0.00;FS=3.407;HaplotypeScore=7.3663;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.059;QD=21.48;ReadPosRankSum=1.665;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2267,246,0 chrVI 174110 . C G 2224 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=225.8073;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=17.94;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2257,255,0 chrVI 174484 . A G 4293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.2362;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.696;QD=21.04;ReadPosRankSum=1.715;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4293,498,0 chrVI 174519 . G A 4595.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=16.1394;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.09;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4595,498,0 chrVI 174556 . C T 4006.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.20;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4006,450,0 chrVI 174682 . G A 4364.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.5363;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.38;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4364,474,0 chrVI 174712 . G A 4175.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.2877;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.81;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4175,456,0 chrVI 174951 . A G 4047.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.6972;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.48;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4047,453,0 chrVI 175060 . T C 4468.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.7004;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.80;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4468,504,0 chrVI 175077 . A G 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=3.148;HaplotypeScore=9.4760;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=1.696;QD=21.84;ReadPosRankSum=1.714;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:4237,471,0 chrVI 175153 . T C 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.166;DP=173;Dels=0.00;FS=2.983;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.178;QD=22.01;ReadPosRankSum=2.393;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3808,426,0 chrVI 175342 . C A 2761 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.9577;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.72;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2794,309,0 chrVI 175522 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.83;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3722,402,0 chrVI 175576 . G A 3512.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.55;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3512,387,0 chrVI 175594 . A G 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=163;Dels=0.00;FS=4.665;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=0.334;QD=17.73;ReadPosRankSum=1.646;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:2923,327,0 chrVI 175597 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1667;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=16.74;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:2712,312,0 chrVI 176010 . T G 4860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.7205;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.315;QD=21.70;ReadPosRankSum=1.546;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:4860,543,0 chrVI 176167 . C T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.36;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4316,474,0 chrVI 176340 . T C 1825 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.07;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1858,207,0 chrVI 176410 . G T 1729 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=12.26;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1762,189,0 chrVI 176518 . T C 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=4.084;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.379;QD=20.52;ReadPosRankSum=1.699;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2188,246,0 chrVI 176548 . G A 1614 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=11.5293;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=18.77;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1647,177,0 chrVI 176588 . T C 1409 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.13;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1442,162,0 chrVI 176745 . G A 2868 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=24.10;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2901,315,0 chrVI 177249 . G A 3567.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3567,408,0 chrVI 177337 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=18.88;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2582,276,0 chrVI 177366 . T C 2482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=144;Dels=0.00;FS=3.136;HaplotypeScore=13.4191;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.460;QD=17.24;ReadPosRankSum=1.707;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,140:144:99:2515,285,0 chrVI 177453 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.721;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.7861;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.253;QD=20.72;ReadPosRankSum=2.955;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:3,152:156:99:3265,375,0 chrVI 177516 . G A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.77;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3571,387,0 chrVI 177753 . T C 3608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=173;Dels=0.00;FS=7.177;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.271;QD=20.86;ReadPosRankSum=2.364;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3608,399,0 chrVI 177798 . G A 3586.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.2852;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=22.84;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3586,399,0 chrVI 177890 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=20.83;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2991,321,0 chrVI 177999 . T C 2795 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=18.89;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2828,318,0 chrVI 178043 . T C 1496 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=35.48;MQ0=0;QD=13.01;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:1529,174,0 chrVI 178052 . T C 1029 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.42;MQ0=0;QD=10.39;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1062,117,0 chrVI 178054 . A T 1018 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;QD=10.49;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1051,117,0 chrVI 178063 . G A 943 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;QD=9.93;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:976,108,0 chrVI 178069 . T C 775 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=8.61;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:90:808,90,0 chrVI 178083 . A G 594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;MQRankSum=0.748;QD=7.33;ReadPosRankSum=1.689;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:72:627,72,0 chrVI 178096 . C T 500 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=8.20;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:57:533,57,0 chrVI 178120 . A C 274 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.46;MQ0=0;MQRankSum=-1.457;QD=7.83;ReadPosRankSum=2.310;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:2,33:35:36:307,36,0 chrVI 178184 . T C 74.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;MQRankSum=1.258;QD=3.55;ReadPosRankSum=2.216;SB=-2.952e+01 GT:AD:DP:GQ:PL 1/1:2,19:21:12:107,12,0 chrVI 178193 . T C 252 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=8.69;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:33:285,33,0 chrVI 178195 . A T 321 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=11.07;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:39:354,39,0 chrVI 178204 . G A 322 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=8.47;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:39:355,39,0 chrVI 178210 . T C 330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.95;MQ0=0;MQRankSum=-1.733;QD=7.67;ReadPosRankSum=1.652;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:39:363,39,0 chrVI 178224 . A G 785 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=0;QD=13.53;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:90:818,90,0 chrVI 178261 . A C 2461 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.8471;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=17.83;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2494,288,0 chrVI 178373 . A G 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;MQRankSum=-0.202;QD=19.35;ReadPosRankSum=1.674;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2394,267,0 chrVI 178425 . G C 2098 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=20.57;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2131,234,0 chrVI 178440 . G A 2028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.6112;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;MQRankSum=0.733;QD=19.31;ReadPosRankSum=1.466;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2061,234,0 chrVI 178452 . A G 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;MQRankSum=0.696;QD=19.59;ReadPosRankSum=1.673;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2345,267,0 chrVI 178649 . T C 2431 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=19.60;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2464,276,0 chrVI 178655 . C T 2739 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=22.09;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2772,300,0 chrVI 179606 . G C 3519.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.58;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3519,393,0 chrVI 179773 . G C 4228.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.36;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4228,465,0 chrVI 179957 . T C 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=184;Dels=0.00;FS=7.830;HaplotypeScore=7.0546;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=1.101;QD=17.39;ReadPosRankSum=2.009;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3232,372,0 chrVI 179981 . T C 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=4.175;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.020;QD=18.29;ReadPosRankSum=1.712;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3160,363,0 chrVI 180152 . C T 2863 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=14.9858;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.21;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2896,315,0 chrVI 180546 . T C 3459.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.06;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3459,396,0 chrVI 181692 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=23.20;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3457,381,0 chrVI 181733 . T G 2948 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.33;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2981,342,0 chrVI 181817 . A G 2390 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2423,273,0 chrVI 184083 . G A 4804.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=18.6699;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.07;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4804,543,0 chrVI 184860 . G A 5707.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=23.6837;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.38;SB=-2.888e+03 GT:AD:DP:GQ:PL 1/1:0,253:255:99:5707,618,0 chrVI 185422 . A G 5350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=253;Dels=0.00;FS=6.073;HaplotypeScore=13.3006;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.837;QD=21.15;ReadPosRankSum=2.972;SB=-3.156e+03 GT:AD:DP:GQ:PL 1/1:3,249:253:99:5350,588,0 chrVI 185806 . C T 6613.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=11.9713;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.40;SB=-3.461e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:6613,726,0 chrVI 186097 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.1674;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=16.27;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2555,282,0 chrVI 186433 . T C 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.054;QD=24.82;ReadPosRankSum=1.678;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1646,177,0 chrVI 186589 . T C 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=146;Dels=0.00;FS=5.867;HaplotypeScore=7.1031;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.607;QD=23.08;ReadPosRankSum=2.952;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3369,384,0 chrVI 186667 . T C 3097 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.46;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3130,354,0 chrVI 186748 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.57;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2974,339,0 chrVI 186886 . T C 3161 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.26;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3194,366,0 chrVI 186936 . T C 3602.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7101;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.94;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3602,402,0 chrVI 187015 . A C 2657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=119;Dels=0.00;FS=6.130;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.376;QD=22.33;ReadPosRankSum=2.924;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2690,297,0 chrVI 187090 . C T 2775 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.51;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2808,309,0 chrVI 187135 . G A 3134 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.61;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3167,342,0 chrVI 187666 . T C 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=107;Dels=0.00;FS=3.020;HaplotypeScore=9.8071;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.340;QD=23.60;ReadPosRankSum=2.403;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:2,103:107:99:2558,285,0 chrVI 187771 . G A 2222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=97;Dels=0.00;FS=3.533;HaplotypeScore=6.8977;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.161;QD=22.91;ReadPosRankSum=0.804;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2255,240,0 chrVI 187801 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.63;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2117,228,0 chrVI 189096 . G A 4957.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.6743;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.63;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4957,531,0 chrVI 189156 . G T 4759.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.9411;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.66;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4759,537,0 chrVI 189505 . G A 3435.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.75;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3435,384,0 chrVI 189631 . T C 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=109;Dels=0.00;FS=3.010;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-1.091;QD=21.67;ReadPosRankSum=1.668;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2395,270,0 chrVI 189700 . C T 2038 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.40;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2071,222,0 chrVI 189752 . T C 2158 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.96;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2191,246,0 chrVI 189828 . A C 2174 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.51;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2207,243,0 chrVI 189847 . G A 1771 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.03;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=17.53;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1804,195,0 chrVI 189863 . C T 1688 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=17.05;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1721,186,0 chrVI 190129 . A G 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=162;Dels=0.00;FS=10.525;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.516;QD=22.87;ReadPosRankSum=2.956;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:3,155:162:99:3705,414,0 chrVI 190170 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=161;Dels=0.00;FS=2.905;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-1.037;QD=20.08;ReadPosRankSum=2.404;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3267,357,0 chrVI 190174 . G A 3212.98 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.83;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3246,354,0 chrVI 190474 . A G 1499 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.82;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1532,174,0 chrVI 190627 . G A 1633 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.77;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1666,180,0 chrVI 190831 . C T 2298 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.10;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2331,258,0 chrVI 190849 . C T 2161 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.19;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2194,246,0 chrVI 190897 . A T 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=118;Dels=0.00;FS=3.906;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.147;QD=20.81;ReadPosRankSum=1.644;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2488,270,0 chrVI 191180 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=23.58;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3240,351,0 chrVI 191392 . C T 1991 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.16;MQ0=0;QD=18.96;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2024,234,0 chrVI 191395 . A T 1977 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;QD=19.77;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2010,219,0 chrVI 191409 . A T 1903 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.6545;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;QD=19.42;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1936,210,0 chrVI 191416 . G T 1721 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=39.14;MQ0=0;QD=18.71;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1754,198,0 chrVI 191439 . G A 1569 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=17.83;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1602,177,0 chrVI 191495 . A G 542 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=47.5234;MLEAC=2;MLEAF=1.00;MQ=22.76;MQ0=0;QD=9.68;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:63:575,63,0 chrVI 191636 . G A 1057 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;QD=19.22;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1090,126,0 chrVI 191655 . T C 646 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=21.53;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:78:679,78,0 chrVI 191661 . T A 182.03 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=11.38;SB=-1.559e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:24:215,24,0 chrVI 191671 . G T 99.26 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.86;MQ0=0;QD=9.93;SB=-2.820e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:132,15,0 chrVI 191674 . T C 94.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.203;DP=13;Dels=0.00;FS=8.129;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.80;MQ0=0;MQRankSum=-0.401;QD=7.25;ReadPosRankSum=1.470;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:1,12:13:15:127,15,0 chrVI 191680 . C T 153.06 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.52;MQ0=0;QD=9.57;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:21:186,21,0 chrVI 191687 . A G 184.01 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.16;MQ0=0;QD=9.20;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:27:217,27,0 chrVI 191749 . G T 1097 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.57;MQ0=0;QD=16.88;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1130,129,0 chrVI 191758 . A G 1100 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.75;MQ0=0;QD=16.92;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1133,129,0 chrVI 191775 . T C 1038 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.59;MQ0=0;QD=17.59;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1071,126,0 chrVI 191780 . C T 980 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;QD=16.61;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1013,120,0 chrVI 191793 . T C 792 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.16;MQ0=0;QD=14.67;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:825,99,0 chrVI 191794 . A G 846 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.16;MQ0=0;QD=15.67;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:879,99,0 chrVI 191799 . A G 768 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.316;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=0;MQRankSum=0.697;QD=13.96;ReadPosRankSum=2.316;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:93:801,93,0 chrVI 191802 . G C 688 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.170;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.30;MQ0=0;MQRankSum=0.350;QD=12.98;ReadPosRankSum=1.890;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:87:721,87,0 chrVI 191827 . T C 383 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=12.77;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:48:416,48,0 chrVI 191836 . C T 296 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=13.45;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:36:329,36,0 chrVI 191847 . G T 235 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=13.82;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:30:268,30,0 chrVI 191856 . A C 130.13 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.30;SB=-2.714e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:163,18,0 chrVI 191860 . T C 123.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.526;DP=15;Dels=0.00;FS=20.560;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;MQRankSum=2.526;QD=8.21;ReadPosRankSum=2.526;SB=-2.714e+01 GT:AD:DP:GQ:PL 1/1:3,12:15:18:156,18,0 chrVI 191880 . T C 174.01 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=0;QD=10.24;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:27:207,27,0 chrVI 191885 . G A 230 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.56;MQ0=0;QD=10.45;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:33:263,33,0 chrVI 191914 . T C 575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.12;MQ0=0;MQRankSum=-1.582;QD=12.50;ReadPosRankSum=1.657;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:75:608,75,0 chrVI 191930 . G A 1001 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.62;MQ0=0;QD=13.90;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1034,126,0 chrVI 191945 . T C 1142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.57;MQ0=0;MQRankSum=-1.914;QD=12.41;ReadPosRankSum=2.396;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1175,149,0 chrVI 191963 . G C 1441 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.62;MQ0=0;QD=13.59;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1474,180,0 chrVI 191994 . G T 1155 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=0;QD=11.32;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1188,141,0 chrVI 192013 . C T 934 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=33.99;MQ0=0;QD=10.04;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:967,111,0 chrVI 192028 . C T 700 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.77;MQ0=0;QD=8.43;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:81:733,81,0 chrVI 192045 . A G 417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=14.260;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;MQRankSum=1.602;QD=5.21;ReadPosRankSum=1.689;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:1,79:80:54:450,54,0 chrVI 192050 . A C 229 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=3.14;SB=-6.902e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:30:262,30,0 chrVI 192065 . C G 172.03 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=2.82;SB=-6.704e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:24:205,24,0 chrVI 192074 . A G 137.06 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=2.21;SB=-1.221e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:21:170,21,0 chrVI 192100 . C T 475 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=0;QD=6.42;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:57:508,57,0 chrVI 192104 . A G 464 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=6.44;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:60:497,60,0 chrVI 192122 . G A 660 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=0;QD=7.17;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:81:693,81,0 chrVI 192128 . C A 791 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.97;MQ0=0;QD=7.46;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:824,99,0 chrVI 192134 . T C 1145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=34.57;MQ0=0;MQRankSum=-1.299;QD=9.54;ReadPosRankSum=1.703;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1178,141,0 chrVI 192166 . G C 2109 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=0;QD=12.41;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:2142,255,0 chrVI 192172 . T C 2223 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=0;QD=12.78;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2256,258,0 chrVI 192234 . T C 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.330;DP=152;Dels=0.00;FS=9.132;HaplotypeScore=7.3307;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;MQRankSum=0.251;QD=16.18;ReadPosRankSum=3.377;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:4,146:152:99:2493,273,0 chrVI 192240 . C T 2574 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0920;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=16.61;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2607,282,0 chrVI 192358 . G A 4366.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.8871;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;QD=22.05;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4366,474,0 chrVI 192485 . T C 2969 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;QD=17.46;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3002,333,0 chrVI 192545 . C T 1676 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=13.97;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1709,195,0 chrVI 192551 . T A 1793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=6.550;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=0;MQRankSum=-1.193;QD=14.70;ReadPosRankSum=1.164;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,121:122:99:1826,198,0 chrVI 192564 . A G 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;MQRankSum=0.477;QD=15.41;ReadPosRankSum=1.705;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:1990,228,0 chrVI 192590 . A G 1974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;MQRankSum=0.627;QD=17.02;ReadPosRankSum=1.702;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2007,225,0 chrVI 192707 . T C 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=1.580;QD=22.77;ReadPosRankSum=1.702;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2652,288,0 chrVI 192732 . T C 2927 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=24.39;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2960,324,0 chrVI 192850 . A C 2621 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.84;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2654,297,0 chrVI 192981 . G A 3395.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.62;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3395,369,0 chrVI 193000 . G A 3344.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.39;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3344,363,0 chrVI 193023 . G A 3005 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=18.78;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3038,330,0 chrVI 193303 . G A 2380 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.83;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2413,273,0 chrVI 193326 . G C 2092 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.31;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2125,234,0 chrVI 193556 . G C 2667 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.04;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2700,306,0 chrVI 193734 . T C 2517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=3.668;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.730;QD=20.80;ReadPosRankSum=1.703;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2550,285,0 chrVI 193872 . T A 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-1.141;QD=22.60;ReadPosRankSum=1.652;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2948,321,0 chrVI 194072 . A G 5710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=257;Dels=0.00;FS=15.104;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-1.192;QD=22.22;ReadPosRankSum=2.957;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:3,253:257:99:5710,654,0 chrVI 194081 . C T 5800.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.31;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5800,639,0 chrVI 194154 . C T 2942 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=17.41;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2975,342,0 chrVI 194162 . A G 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;MQRankSum=-1.595;QD=17.36;ReadPosRankSum=1.713;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3105,354,0 chrVI 194187 . T C 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=180;Dels=0.00;FS=3.979;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;MQRankSum=-1.674;QD=16.39;ReadPosRankSum=1.694;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:2983,339,0 chrVI 194193 . A G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.963;DP=187;Dels=0.00;FS=2.565;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=0.651;QD=16.74;ReadPosRankSum=2.898;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:3164,354,0 chrVI 194247 . G T 4792.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.0491;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.80;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:4792,525,0 chrVI 194306 . C A 4016.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.8091;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=19.69;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4016,441,0 chrVI 194319 . C T 3639.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=5.5332;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=21.41;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3639,399,0 chrVI 194540 . G A 2248 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=20.62;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2281,258,0 chrVI 194593 . G T 1796 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=18.14;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1829,201,0 chrVI 194612 . T C 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.716;DP=109;Dels=0.00;FS=8.032;HaplotypeScore=169.9527;MLEAC=1;MLEAF=0.500;MQ=48.32;MQ0=0;MQRankSum=-1.600;QD=0.23;ReadPosRankSum=-2.861;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:104,5:109:50:55,0,50 chrVI 194614 . T C 142.11 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.555;DP=113;Dels=0.00;FS=6.529;HaplotypeScore=169.9527;MLEAC=1;MLEAF=0.500;MQ=48.78;MQ0=0;MQRankSum=0.506;QD=1.26;ReadPosRankSum=3.912;SB=-1.142e+03 GT:AD:DP:GQ:PL 0/1:6,107:113:13:172,0,13 chrVI 196316 . C A 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.245;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.2877;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.102;QD=20.12;ReadPosRankSum=-1.474;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2467,260,0 chrVI 197402 . G A 3505.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3505,393,0 chrVI 197486 . A T 2761 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.01;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2794,300,0 chrVI 197758 . G A 3152 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.35;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3185,339,0 chrVI 197775 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4071;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.76;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2940,330,0 chrVI 197849 . G A 4142.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.1796;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=23.14;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4142,474,0 chrVI 198089 . C T 5948.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.40;SB=-3.313e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:5948,651,0 chrVI 198092 . A G 5481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=276;Dels=0.00;FS=3.494;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=-1.656;QD=19.86;ReadPosRankSum=1.682;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:1,274:276:99:5481,639,0 chrVI 198116 . T C 5070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=1.233;QD=19.73;ReadPosRankSum=1.638;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:5070,561,0 chrVI 198275 . G T 6290.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=17.0658;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.07;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:0,282:284:99:6290,684,0 chrVI 198427 . C T 4148.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.0613;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.83;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4148,456,0 chrVI 198446 . A G 4012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=201;Dels=0.00;FS=6.632;HaplotypeScore=8.1639;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.141;QD=19.96;ReadPosRankSum=2.400;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:4012,468,0 chrVI 198501 . G A 3410.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=16.0533;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=17.76;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:3410,399,0 chrVI 198590 . A G 3450.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=18.85;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3450,393,0 chrVI 198602 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=18.05;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3412,387,0 chrVI 198638 . T C 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=177;Dels=0.01;FS=7.063;HaplotypeScore=12.2366;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.206;QD=18.03;ReadPosRankSum=2.350;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:2,171:176:99:3225,357,0 chrVI 198689 . C T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.91;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3367,378,0 chrVI 199107 . C T 2944 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.02;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.00;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2977,327,0 chrVI 199207 . G A 2459 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.56;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2492,267,0 chrVI 199246 . T C 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.7048;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.429;QD=20.55;ReadPosRankSum=1.637;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2273,264,0 chrVI 199313 . A C 2078 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=17.46;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2111,234,0 chrVI 199316 . C T 2079 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=17.32;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2112,228,0 chrVI 199373 . C T 2477 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.47;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2510,273,0 chrVI 199447 . T C 42.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.235;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=0.596;QD=0.40;ReadPosRankSum=-3.636;SB=-8.197e+01 GT:AD:DP:GQ:PL 1/1:101,5:107:9:75,9,0 chrVI 199469 . C A 1215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.893;DP=101;Dels=0.00;FS=8.680;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=0.328;QD=12.03;ReadPosRankSum=2.101;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:5,94:101:99:1248,114,0 chrVI 199471 . A C 1232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=101;Dels=0.01;FS=9.201;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=0.981;QD=12.20;ReadPosRankSum=2.293;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:5,95:100:99:1265,137,0 chrVI 199526 . A G 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=126;Dels=0.00;FS=7.570;HaplotypeScore=110.2070;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;MQRankSum=0.869;QD=15.93;ReadPosRankSum=1.591;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2040,228,0 chrVI 199558 . A T 3013 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=19.69;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3046,330,0 chrVI 199576 . A C 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.6361;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=0.585;QD=18.46;ReadPosRankSum=-0.758;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2986,330,0 chrVI 199828 . G C 2667 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.34;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2700,306,0 chrVI 199969 . A G 1469 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1502,165,0 chrVI 200930 . A G 1322 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1355,156,0 chrVI 201440 . T C 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=4.671;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.329;QD=20.90;ReadPosRankSum=1.705;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2750,306,0 chrVI 202704 . C T 3135 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.47;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3168,342,0 chrVI 204894 . G T 1196 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=79.2537;MLEAC=2;MLEAF=1.00;MQ=38.47;MQ0=0;QD=19.93;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1229,141,0 chrVI 204997 . G T 461 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=15.90;SB=-6.532e-03 GT:AD:DP:GQ:PL 1/1:0,28:29:57:494,57,0 chrVI 205939 . C T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=45.5349;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;QD=0.37;SB=-5.877e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:6:57,6,0 chrVI 205988 . T C 1312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;MQRankSum=-1.161;QD=14.42;ReadPosRankSum=1.694;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1345,153,0 chrVI 206000 . G A 1775 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;QD=16.90;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1808,201,0 chrVI 206167 . G T 3471.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.5363;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=23.77;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3471,375,0 chrVI 206215 . C T 3637.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=23.31;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3637,408,0 chrVI 206355 . T C 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.275;QD=23.10;ReadPosRankSum=1.690;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3811,414,0 chrVI 206445 . G C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.93;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,136:141:99:3268,354,0 chrVI 206552 . G A 3514.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=22.67;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3514,399,0 chrVI 206614 . C T 3367.01 SnpCluster AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=20.28;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3367,372,0 chrVI 206615 . C T 3193 SnpCluster AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=19.23;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3226,369,0 chrVI 206619 . G A 3420.01 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=20.12;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3420,369,0 chrVI 206704 . G T 2651 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=18.94;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2684,285,0 chrVI 206706 . C T 2605 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=18.09;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2638,291,0 chrVI 206741 . T A 2525 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=16.61;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2558,282,0 chrVI 206814 . A G 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=117;Dels=0.00;FS=2.748;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.578;QD=20.75;ReadPosRankSum=2.366;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2461,276,0 chrVI 206918 . A G 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=1.177;QD=21.80;ReadPosRankSum=2.407;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2562,285,0 chrVI 206984 . A G 1652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=14.5720;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=-0.242;QD=18.77;ReadPosRankSum=1.692;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:1,85:88:99:1685,189,0 chrVI 207041 . C T 1251 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.57;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1284,144,0 chrVI 207125 . A G 2345 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=25.49;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2378,261,0 chrVI 207192 . G A 2389 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.72;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2422,279,0 chrVI 207279 . G A 2927 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.39;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2960,324,0 chrVI 207357 . G C 4186.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.26;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4186,468,0 chrVI 207374 . G C 4054.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.45;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,185:189:99:4054,459,0 chrVI 207456 . A G 3907.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=23.54;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3907,438,0 chrVI 207472 . G A 3842.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.7316;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=22.08;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3842,420,0 chrVI 207604 . C G 4339.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.7635;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=20.28;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4339,501,0 chrVI 207607 . C T 4406.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.5522;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=20.49;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4406,483,0 chrVI 207696 . G A 4128.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.5720;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=19.94;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4128,444,0 chrVI 207700 . G A 4070.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=19.47;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4070,441,0 chrVI 207745 . C G 3031 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.7347;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=17.22;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3064,357,0 chrVI 207756 . A G 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;DP=183;Dels=0.00;FS=2.917;HaplotypeScore=8.5577;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.007;QD=16.44;ReadPosRankSum=2.031;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:3042,348,0 chrVI 207856 . A G 1863 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;MQRankSum=0.410;QD=12.26;ReadPosRankSum=1.709;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,151:152:99:1896,216,0 chrVI 207862 . G A 1786 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=11.83;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,150:151:99:1819,207,0 chrVI 207865 . T C 1969 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=13.30;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2002,225,0 chrVI 208024 . T A 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=0.764;QD=23.51;ReadPosRankSum=1.711;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3785,417,0 chrVI 208153 . A G 2155 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.34;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2188,249,0 chrVI 208165 . T C 1924 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.04;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1957,228,0 chrVI 208427 . A T 1242 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1275,144,0 chrVI 208668 . T C 4474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=201;Dels=0.00;FS=3.164;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-1.250;QD=22.26;ReadPosRankSum=1.715;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4474,507,0 chrVI 208850 . A T 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.237;QD=17.75;ReadPosRankSum=1.665;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2767,318,0 chrVI 210967 . C G 4667.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4667,546,0 chrVI 211652 . T C 5009.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=18.4969;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.53;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5009,555,0 chrVI 211683 . T A 4820.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.51;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4820,531,0 chrVI 211826 . T C 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=3.149;HaplotypeScore=8.6733;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.100;QD=20.53;ReadPosRankSum=1.667;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3305,366,0 chrVI 212121 . C T 4259.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4259,477,0 chrVI 212247 . G A 3703.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3703,405,0 chrVI 212818 . T C 5285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=260;Dels=0.00;FS=5.229;HaplotypeScore=14.2734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.426;QD=20.33;ReadPosRankSum=1.652;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:1,259:260:99:5285,588,0 chrVI 213465 . C T 5065.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.71;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5065,544,0 chrVI 213825 . G A 4320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.3357;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.900;QD=21.07;ReadPosRankSum=-0.934;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4320,450,0 chrVI 214157 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=15.1730;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.17;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3528,414,0 chrVI 219079 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.5903;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.15;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2290,246,0 chrVI 221528 . C G 4985.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=19.8442;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.35;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:4985,543,0 chrVI 223266 . T G 2147 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2180,243,0 chrVI 225899 . G A 4920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=14.7742;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-1.732;QD=17.45;ReadPosRankSum=1.496;SB=-2.971e+03 GT:AD:DP:GQ:PL 1/1:1,278:282:99:4920,567,0 chrVI 225913 . G A 5126.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=18.99;SB=-2.964e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:5126,558,0 chrVI 225942 . G A 4854.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=13.7409;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=18.53;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:4854,528,0 chrVI 226036 . G C 4557.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=17.2850;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.16;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,247:251:99:4557,522,0 chrVI 226167 . C G 1760 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=10.11;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:1793,207,0 chrVI 226175 . A G 1677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=178;Dels=0.02;FS=3.190;HaplotypeScore=14.2193;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;MQRankSum=-0.050;QD=9.42;ReadPosRankSum=1.712;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:1710,201,0 chrVI 226370 . T C 5999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=256;Dels=0.00;FS=3.023;HaplotypeScore=11.4461;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=1.750;QD=23.43;ReadPosRankSum=2.421;SB=-3.391e+03 GT:AD:DP:GQ:PL 1/1:2,254:256:99:5999,657,0 chrVI 226463 . C T 3492.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.0545;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=19.62;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3492,396,0 chrVI 226641 . C G 535.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;DP=114;Dels=0.00;FS=16.892;HaplotypeScore=21.2271;MLEAC=1;MLEAF=0.500;MQ=40.43;MQ0=0;MQRankSum=-0.138;QD=4.69;ReadPosRankSum=-8.408;SB=-1.900e+02 GT:AD:DP:GQ:PL 0/1:68,45:114:99:565,0,337 chrVI 226791 . G A 1953 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=19.15;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1986,216,0 chrVI 226796 . A G 1851 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=17.63;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1884,216,0 chrVI 226804 . C A 1824 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=16.00;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:1857,204,0 chrVI 227025 . T C 5029.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.40;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5029,582,0 chrVI 227223 . G T 3926.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.1090;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.88;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:3926,426,0 chrVI 227693 . G A 2065 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2098,225,0 chrVI 228093 . C T 4273.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=24.1450;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.66;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4273,468,0 chrVI 228170 . G A 5326.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=18.7092;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.39;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5326,579,0 chrVI 228332 . A G 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=182;Dels=0.00;FS=6.538;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-0.263;QD=21.59;ReadPosRankSum=2.328;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3929,429,0 chrVI 228344 . G A 4112.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.7062;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=21.42;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4112,441,0 chrVI 228509 . A G 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=223;Dels=0.00;FS=3.424;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=-0.346;QD=18.79;ReadPosRankSum=1.716;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:1,219:223:99:4190,483,0 chrVI 228515 . A G 4187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=227;Dels=0.00;FS=6.803;HaplotypeScore=8.4914;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-0.449;QD=18.44;ReadPosRankSum=2.266;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:2,225:227:99:4187,468,0 chrVI 228554 . T C 3906.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=18.60;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:3906,435,0 chrVI 228605 . C T 3974.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=20.59;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:3974,438,0 chrVI 228617 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=191;Dels=0.00;FS=3.493;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-1.313;QD=19.02;ReadPosRankSum=1.696;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3633,405,0 chrVI 228620 . C T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=19.29;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3568,402,0 chrVI 229320 . G A 3322.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.5940;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=19.66;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3322,366,0 chrVI 229337 . G A 3060 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;QD=18.66;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3093,339,0 chrVI 229348 . C A 2291 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.03;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=15.59;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2324,255,0 chrVI 229349 . G A 2305 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.02;FS=0.000;HaplotypeScore=3.7317;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;QD=15.79;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2338,258,0 chrVI 229382 . G A 2726 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=15.58;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,173:175:99:2759,315,0 chrVI 229520 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=18.42;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:3389,393,0 chrVI 229526 . A G 3738.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=19.57;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3738,435,0 chrVI 229568 . C T 4223.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=5.9904;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=18.94;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4223,477,0 chrVI 229586 . C G 4552.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=15.1887;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=18.43;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,243:247:99:4552,531,0 chrVI 229757 . T C 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=5.279;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-1.541;QD=20.21;ReadPosRankSum=1.684;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2984,336,0 chrVI 229802 . G A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.80;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3597,387,0 chrVI 229838 . T A 4164.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.79;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4164,450,0 chrVI 229887 . G A 3141 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.51;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3174,354,0 chrVI 229951 . A G 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=3.513;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.684;QD=22.80;ReadPosRankSum=1.674;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2769,312,0 chrVI 230129 . T C 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=135;Dels=0.00;FS=5.806;HaplotypeScore=10.6633;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=2.336;QD=24.48;ReadPosRankSum=2.903;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:3305,360,0 chrVI 230195 . T C 2564 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.31;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2597,288,0 chrVI 230462 . C T 2097 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2130,234,0 chrVI 230627 . C T 1858 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.88;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1891,210,0 chrVI 230891 . G A 1958 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.25;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1991,213,0 chrVI 230918 . C T 1706 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.55;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1739,198,0 chrVI 230993 . A G 1778 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=18.91;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1811,210,0 chrVI 231001 . A G 1778 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.20;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1811,201,0 chrVI 231077 . G A 1483 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=18.09;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1516,168,0 chrVI 231098 . G A 1626 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.07;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1659,186,0 chrVI 231278 . T C 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=1.328;QD=22.17;ReadPosRankSum=1.646;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2694,309,0 chrVI 231344 . T C 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.269;QD=22.60;ReadPosRankSum=1.711;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3638,420,0 chrVI 231638 . G A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3489,378,0 chrVI 231713 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.9297;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.753;QD=23.83;ReadPosRankSum=1.708;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3456,399,0 chrVI 231775 . A G 2899 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.47;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2932,330,0 chrVI 231902 . G A 2379 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2412,270,0 chrVI 232279 . A T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.52;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3333,366,0 chrVI 232619 . G A 2732 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.85;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2765,315,0 chrVI 232697 . T C 2696 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.06;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2729,312,0 chrVI 233010 . C A 53.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;DP=197;Dels=0.00;FS=2.560;HaplotypeScore=955.9469;MLEAC=1;MLEAF=0.500;MQ=39.91;MQ0=0;MQRankSum=0.713;QD=0.27;ReadPosRankSum=-5.966;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:183,13:197:83:83,0,119 chrVI 233077 . A G 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.330;DP=226;Dels=0.01;FS=13.626;HaplotypeScore=49.2865;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.467;QD=14.58;ReadPosRankSum=4.461;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:7,216:223:99:3294,375,0 chrVI 233456 . C T 2720 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.1019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2753,303,0 chrVI 233698 . A G 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.295;QD=20.45;ReadPosRankSum=1.638;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2303,258,0 chrVI 233790 . C G 2145 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2178,246,0 chrVI 234085 . G C 1167 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.82;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,59:62:99:1200,135,0 chrVI 234160 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.61;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2297,252,0 chrVI 234233 . A G 2496 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.9171;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.80;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2529,294,0 chrVI 234355 . A G 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=165;Dels=0.00;FS=4.514;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.739;QD=23.08;ReadPosRankSum=1.711;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3809,426,0 chrVI 234388 . A G 4406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=193;Dels=0.00;FS=14.109;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.190;QD=22.83;ReadPosRankSum=2.910;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:3,187:193:99:4406,486,0 chrVI 234585 . A G 3643.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=0.611;QD=21.06;ReadPosRankSum=1.712;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3643,411,0 chrVI 234589 . T A 3730.01 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=21.69;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3730,405,0 chrVI 234593 . T C 3443.01 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=20.13;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3443,384,0 chrVI 234694 . A G 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.248;DP=141;Dels=0.00;FS=18.167;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.223;QD=21.65;ReadPosRankSum=4.428;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:7,134:141:99:3086,339,0 chrVI 234904 . A G 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=3.590;HaplotypeScore=3.4356;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=1.624;QD=21.00;ReadPosRankSum=1.667;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3360,378,0 chrVI 234914 . G A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.28;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3476,375,0 chrVI 235072 . T C 3971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=197;Dels=0.00;FS=4.684;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.009;QD=20.16;ReadPosRankSum=1.662;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3971,444,0 chrVI 235321 . A G 2444 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1233;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.82;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2477,276,0 chrVI 235342 . A G 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-1.509;QD=22.41;ReadPosRankSum=1.704;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2812,321,0 chrVI 235446 . G A 2609 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.2756;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.30;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,112:117:99:2642,291,0 chrVI 235489 . C T 2789 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.04;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2822,312,0 chrVI 236008 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.95;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3468,372,0 chrVI 236158 . T A 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=3.194;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.331;QD=21.36;ReadPosRankSum=1.703;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2617,282,0 chrVI 236173 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.3343;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.01;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2659,288,0 chrVI 236260 . G T 2645 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2678,297,0 chrVI 236578 . G A 2913 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2946,318,0 chrVI 237141 . G A 122.13 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=18.7954;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=4.89;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:18:155,18,0 chrVI 237463 . T A 1936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.157;QD=25.14;ReadPosRankSum=1.687;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1969,213,0 chrVI 237962 . G A 2279 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.70;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2312,249,0 chrVI 237965 . G A 2168 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=20.85;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2201,243,0 chrVI 238213 . C A 2214 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.07;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2247,246,0 chrVI 238446 . C T 3066 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.88;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3099,336,0 chrVI 238465 . G T 2943 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.64;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2976,321,0 chrVI 238503 . T C 2701 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.44;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2734,312,0 chrVI 238621 . A G 3487.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.39;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3487,396,0 chrVI 238704 . C T 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=168;Dels=0.00;FS=3.332;HaplotypeScore=15.8972;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=1.505;QD=20.23;ReadPosRankSum=0.557;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3398,360,0 chrVI 238707 . A G 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=15.1085;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-1.005;QD=19.50;ReadPosRankSum=1.689;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3212,354,0 chrVI 238769 . C G 2977 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=19.33;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3010,339,0 chrVI 238877 . A C 3334.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.68;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3334,372,0 chrVI 238901 . A G 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=125;Dels=0.00;FS=6.004;HaplotypeScore=5.2890;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=0.244;QD=21.18;ReadPosRankSum=2.943;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2681,312,0 chrVI 239066 . C T 2295 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.86;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2328,252,0 chrVI 239277 . T A 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=104;Dels=0.00;FS=2.743;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.124;QD=21.74;ReadPosRankSum=2.379;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2294,267,0 chrVI 239360 . A G 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=145;Dels=0.00;FS=7.021;HaplotypeScore=15.2111;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.006;QD=19.72;ReadPosRankSum=2.381;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:2893,324,0 chrVI 239478 . G A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=20.71;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3375,360,0 chrVI 239489 . A G 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=153;Dels=0.00;FS=3.623;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.957;QD=18.69;ReadPosRankSum=1.709;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:2893,330,0 chrVI 239639 . C G 2966 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.39;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2999,342,0 chrVI 239766 . A G 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.594;DP=87;Dels=0.00;FS=2.498;HaplotypeScore=8.9382;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.616;QD=19.22;ReadPosRankSum=2.919;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1705,192,0 chrVI 239828 . G T 1665 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.82;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1698,186,0 chrVI 239854 . T C 1426 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=18.76;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1459,171,0 chrVI 239986 . G A 1935 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.50;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1968,216,0 chrVI 240289 . C T 4574.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=17.2274;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.60;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4574,513,0 chrVI 240352 . G C 5234.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=19.9612;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.28;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:0,242:246:99:5234,591,0 chrVI 240423 . C A 5613.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.68;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5613,601,0 chrVI 240610 . T C 4865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=273;Dels=0.00;FS=3.124;HaplotypeScore=7.4239;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-0.940;QD=17.82;ReadPosRankSum=1.694;SB=-3.307e+03 GT:AD:DP:GQ:PL 1/1:1,270:273:99:4865,543,0 chrVI 240613 . G A 5041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=0.455;QD=18.33;ReadPosRankSum=1.138;SB=-3.471e+03 GT:AD:DP:GQ:PL 1/1:1,273:275:99:5041,524,0 chrVI 241183 . C T 5155.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=17.5517;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.75;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5155,585,0 chrVI 241694 . T C 2302 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.93;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2335,258,0 chrVI 241696 . A G 2184 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.04;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2217,258,0 chrVI 241803 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.82;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2989,321,0 chrVI 241821 . G A 2630 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.87;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2663,288,0 chrVI 241871 . G T 2364 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.8684;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=18.33;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2397,261,0 chrVI 241949 . T C 2308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=105;Dels=0.01;FS=2.590;HaplotypeScore=12.8229;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.563;QD=21.98;ReadPosRankSum=2.933;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2341,261,0 chrVI 241984 . G C 2462 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.67;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2495,282,0 chrVI 242528 . G T 4413.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.8877;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.98;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4413,483,0 chrVI 242595 . C G 5478.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=19.8542;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.02;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5478,624,0 chrVI 242717 . C T 4860.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.1896;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.40;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4860,534,0 chrVI 242843 . C G 4018.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.49;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4018,468,0 chrVI 242888 . A G 3515.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.13;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3515,405,0 chrVI 244552 . C T 3602.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=18.47;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3602,411,0 chrVI 244566 . C A 4106.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.13;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4106,444,0 chrVI 245661 . G A 3011 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.16;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3044,330,0 chrVI 246893 . A G 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.310;QD=22.67;ReadPosRankSum=1.702;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2640,300,0 chrVI 248151 . C T 1951 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1984,216,0 chrVI 248365 . A G 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=4.210;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.195;QD=23.79;ReadPosRankSum=1.672;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2816,312,0 chrVI 252277 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2584,276,0 chrVI 252852 . G A 4709.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.31;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4709,516,0 chrVI 254401 . T C 4272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.115;DP=224;Dels=0.00;FS=13.651;HaplotypeScore=18.8687;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.915;QD=19.07;ReadPosRankSum=3.366;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:4,218:224:99:4272,486,0 chrVI 255999 . A G 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=126;Dels=0.00;FS=11.473;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.556;QD=22.44;ReadPosRankSum=2.372;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2860,324,0 chrVI 256723 . G A 1076 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.93;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1109,126,0 chrVI 257096 . T C 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=14.2376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.885;QD=21.39;ReadPosRankSum=1.706;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2963,336,0 chrVI 258551 . C A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3825,423,0 chrVI 259953 . T A 3134 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0428;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3167,345,0 chrVI 262022 . T C 3605.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.6291;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.69;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3605,393,0 chrVI 262451 . T C 2286 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2319,255,0 chrVI 266145 . T C 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=4.543;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.577;QD=21.76;ReadPosRankSum=1.670;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2448,276,0 chrVI 267481 . A G 3012 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3358;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.21;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3045,351,0 chrVI 267777 . C T 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.151;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.1222;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.022;QD=22.53;ReadPosRankSum=-1.345;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3628,377,0 chrVI 268516 . C T 1878 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1911,219,0 chrVI 268899 . G A 3019 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3052,333,0 chrVI 269633 . A G 1834 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1867,204,0 chrVI 269754 . T A 1576 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1609,177,0 chrVI 269961 . C G 3348.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.5971;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;QD=23.74;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3348,378,0 chrVI 270122 . G T 535.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.713;DP=156;Dels=0.01;FS=10.597;HaplotypeScore=187.0664;MLEAC=1;MLEAF=0.500;MQ=28.94;MQ0=6;MQRankSum=-0.150;QD=3.43;ReadPosRankSum=9.288;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,58:154:99:565,0,1355 chrVI 270135 . G T 641.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=222.2409;MLEAC=1;MLEAF=0.500;MQ=27.56;MQ0=6;MQRankSum=0.877;QD=4.19;ReadPosRankSum=3.811;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,38:152:99:671,0,1262 chrVII 69 . A T 136.13 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=0;QD=2.31;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,59:59:18:169,18,0 chrVII 83 . A T 171.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.581;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=92.3141;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=0;MQRankSum=-0.356;QD=1.50;ReadPosRankSum=2.939;SB=-3.022e+00 GT:AD:DP:GQ:PL 1/1:5,108:114:3:201,3,0 chrVII 84 . C T 231.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.470;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=92.3141;MLEAC=1;MLEAF=0.500;MQ=26.01;MQ0=0;MQRankSum=0.468;QD=2.03;ReadPosRankSum=2.911;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:5,108:114:32:261,0,32 chrVII 88 . T G 218.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=93.1028;MLEAC=1;MLEAF=0.500;MQ=26.33;MQ0=0;MQRankSum=-0.074;QD=1.66;ReadPosRankSum=4.120;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:10,120:131:72:248,0,72 chrVII 110 . C A 566.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.014;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=26.66;MQ0=0;MQRankSum=1.225;QD=3.58;ReadPosRankSum=-0.795;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:5,152:158:33:596,0,33 chrVII 111 . C T 567.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.279;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=26.66;MQ0=0;MQRankSum=0.487;QD=3.59;ReadPosRankSum=-0.923;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:6,152:158:33:597,0,33 chrVII 127 . T C 468.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=26.98;MQ0=0;MQRankSum=1.009;QD=3.04;ReadPosRankSum=-3.751;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:5,149:154:37:498,0,37 chrVII 128 . C T 476.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=26.98;MQ0=0;MQRankSum=0.724;QD=3.09;ReadPosRankSum=-2.946;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:6,148:154:40:506,0,40 chrVII 133 . C T 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.891;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=26.89;MQ0=1;MQRankSum=1.993;QD=0.17;ReadPosRankSum=1.685;SB=-2.310e+02 GT:AD:DP:GQ:PL 0/1:148,7:155:56:56,0,358 chrVII 134 . C A 238.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.703;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=26.82;MQ0=2;MQRankSum=1.737;QD=1.80;ReadPosRankSum=-0.982;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:8,124:132:62:268,0,62 chrVII 136 . T C 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.280;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=26.82;MQ0=2;MQRankSum=0.804;QD=0.11;ReadPosRankSum=-0.483;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:8,124:132:44:44,0,98 chrVII 138 . C A 125.13 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=117.3895;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=2;QD=0.95;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,132:132:18:158,18,0 chrVII 142 . A C 745 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=128.0291;MLEAC=2;MLEAF=1.00;MQ=26.90;MQ0=2;QD=5.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,142:142:81:778,81,0 chrVII 151 . C T 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=2;MQRankSum=1.523;QD=0.11;ReadPosRankSum=-0.309;SB=-2.170e+02 GT:AD:DP:GQ:PL 0/1:129,6:135:44:44,0,564 chrVII 154 . C A 442.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.909;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=26.99;MQ0=3;MQRankSum=0.782;QD=3.45;ReadPosRankSum=1.659;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:11,117:128:50:472,0,50 chrVII 175 . C G 241.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.278;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=101.8145;MLEAC=1;MLEAF=0.500;MQ=26.84;MQ0=3;MQRankSum=2.473;QD=2.80;ReadPosRankSum=2.618;SB=-6.528e-03 GT:AD:DP:GQ:PL 0/1:21,59:86:54:271,0,54 chrVII 176 . T C 278.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=101.8145;MLEAC=1;MLEAF=0.500;MQ=26.84;MQ0=3;MQRankSum=1.042;QD=3.23;ReadPosRankSum=-0.214;SB=-6.476e-03 GT:AD:DP:GQ:PL 0/1:13,73:86:67:308,0,67 chrVII 181 . T A 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.713;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=57.1743;MLEAC=1;MLEAF=0.500;MQ=25.94;MQ0=5;MQRankSum=1.229;QD=0.45;ReadPosRankSum=-0.952;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,16:83:67:67,0,107 chrVII 188 . C T 158.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.519;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=23.7503;MLEAC=1;MLEAF=0.500;MQ=24.47;MQ0=9;MQRankSum=3.306;QD=2.03;ReadPosRankSum=1.598;SB=-6.537e-03 GT:AD:DP:GQ:PL 0/1:30,48:78:51:188,0,51 chrVII 192 . T C 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=11.8735;MLEAC=1;MLEAF=0.500;MQ=23.92;MQ0=10;MQRankSum=2.290;QD=0.70;ReadPosRankSum=0.494;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,34:76:83:83,0,116 chrVII 212 . T C 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=23.5816;MLEAC=1;MLEAF=0.500;MQ=24.92;MQ0=9;MQRankSum=1.588;QD=0.22;ReadPosRankSum=0.167;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,24:108:54:54,0,330 chrVII 226 . T C 295.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.675;DP=140;Dels=0.04;FS=0.000;HaplotypeScore=139.1037;MLEAC=1;MLEAF=0.500;MQ=23.20;MQ0=22;MQRankSum=-1.067;QD=2.11;ReadPosRankSum=-0.768;SB=-7.889e-03 GT:AD:DP:GQ:PL 0/1:46,89:135:32:325,0,32 chrVII 243 . A G 427 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.780;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=92.4221;MLEAC=2;MLEAF=1.00;MQ=20.07;MQ0=42;MQRankSum=-2.727;QD=2.15;ReadPosRankSum=-4.080;SB=-2.300e+01 GT:AD:DP:GQ:PL 1/1:60,139:199:36:460,36,0 chrVII 245 . T C 434 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.074;DP=204;Dels=0.04;FS=0.000;HaplotypeScore=146.2861;MLEAC=2;MLEAF=1.00;MQ=19.93;MQ0=46;MQRankSum=-3.114;QD=2.13;ReadPosRankSum=-3.531;SB=-2.700e+01 GT:AD:DP:GQ:PL 1/1:53,143:196:36:467,36,0 chrVII 249 . A G 336.05 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;DP=223;Dels=0.00;FS=7.782;HaplotypeScore=84.2967;MLEAC=1;MLEAF=0.500;MQ=19.90;MQ0=48;MQRankSum=-3.711;QD=1.51;ReadPosRankSum=-2.778;SB=-4.963e-02 GT:AD:DP:GQ:PL 0/1:70,152:223:17:366,0,17 chrVII 318 . A G 93.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.713;DP=443;Dels=0.00;FS=272.249;HaplotypeScore=14.6416;MLEAC=1;MLEAF=0.500;MQ=22.70;MQ0=36;MQRankSum=6.642;QD=0.21;ReadPosRankSum=-2.324;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:314,127:443:99:123,0,2734 chrVII 331 . A G 2253.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;DP=463;Dels=0.00;FS=467.335;HaplotypeScore=116.9078;MLEAC=1;MLEAF=0.500;MQ=23.94;MQ0=22;MQRankSum=-3.291;QD=4.87;ReadPosRankSum=5.445;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:198,264:463:99:2283,0,855 chrVII 338 . C T 407.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.871;DP=452;Dels=0.01;FS=397.337;HaplotypeScore=109.3722;MLEAC=1;MLEAF=0.500;MQ=24.35;MQ0=10;MQRankSum=8.300;QD=0.90;ReadPosRankSum=-3.038;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:292,156:449:99:437,0,2464 chrVII 378 . G C 170.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;DP=345;Dels=0.00;FS=288.154;HaplotypeScore=24.6893;MLEAC=1;MLEAF=0.500;MQ=24.71;MQ0=30;MQRankSum=6.753;QD=0.49;ReadPosRankSum=-1.637;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:230,110:345:99:200,0,1885 chrVII 379 . C T 187.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.696;DP=339;Dels=0.00;FS=284.911;HaplotypeScore=20.7459;MLEAC=1;MLEAF=0.500;MQ=24.86;MQ0=30;MQRankSum=6.514;QD=0.55;ReadPosRankSum=-1.401;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:221,111:339:99:217,0,1885 chrVII 382 . T C 184.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.200;DP=329;Dels=0.00;FS=288.033;HaplotypeScore=18.5982;MLEAC=1;MLEAF=0.500;MQ=24.67;MQ0=36;MQRankSum=6.666;QD=0.56;ReadPosRankSum=-1.167;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:210,117:329:99:214,0,1959 chrVII 395 . T A 78.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.891;DP=302;Dels=0.00;FS=213.039;HaplotypeScore=25.4884;MLEAC=1;MLEAF=0.500;MQ=25.40;MQ0=37;MQRankSum=7.726;QD=0.26;ReadPosRankSum=2.200;SB=-3.011e+00 GT:AD:DP:GQ:PL 0/1:199,103:302:99:108,0,1522 chrVII 401 . C A 147.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.967;DP=273;Dels=0.00;FS=194.914;HaplotypeScore=23.6492;MLEAC=1;MLEAF=0.500;MQ=24.93;MQ0=38;MQRankSum=6.628;QD=0.54;ReadPosRankSum=5.300;SB=0.507 GT:AD:DP:GQ:PL 0/1:186,87:273:99:177,0,1244 chrVII 402 . G T 191.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.114;DP=272;Dels=0.00;FS=247.861;HaplotypeScore=20.4945;MLEAC=1;MLEAF=0.500;MQ=24.87;MQ0=39;MQRankSum=7.155;QD=0.70;ReadPosRankSum=6.313;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:186,83:272:99:221,0,1198 chrVII 404 . T G 168.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.768;DP=269;Dels=0.00;FS=250.686;HaplotypeScore=16.5510;MLEAC=1;MLEAF=0.500;MQ=24.86;MQ0=40;MQRankSum=6.427;QD=0.62;ReadPosRankSum=6.677;SB=0.015 GT:AD:DP:GQ:PL 0/1:183,83:269:99:198,0,1386 chrVII 520 . T G 892.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.095;DP=494;Dels=0.00;FS=32.920;HaplotypeScore=68.3688;MLEAC=1;MLEAF=0.500;MQ=31.01;MQ0=26;MQRankSum=-10.405;QD=1.81;ReadPosRankSum=-0.234;SB=-4.660e+02 GT:AD:DP:GQ:PL 0/1:300,185:494:99:922,0,4569 chrVII 749 . T C 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;DP=198;Dels=0.00;FS=118.898;HaplotypeScore=49.3084;MLEAC=1;MLEAF=0.500;MQ=49.47;MQ0=2;MQRankSum=-9.031;QD=0.18;ReadPosRankSum=-3.413;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:157,41:198:66:66,0,3475 chrVII 1721 . G A 3138 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.8858;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.58;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3171,330,0 chrVII 2649 . G A 1673 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1706,186,0 chrVII 3473 . G A 3719.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.30;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3719,376,0 chrVII 3709 . C A 4689.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.6786;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.48;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4689,469,0 chrVII 4473 . C T 2734 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=25.08;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2767,276,0 chrVII 4504 . T C 2819 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=21.85;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2852,297,0 chrVII 4516 . C T 3113 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7853;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.41;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3146,322,0 chrVII 6816 . A G 1338.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-11.286;DP=355;Dels=0.00;FS=3.757;HaplotypeScore=17.7486;MLEAC=1;MLEAF=0.500;MQ=43.49;MQ0=1;MQRankSum=-8.886;QD=3.77;ReadPosRankSum=1.114;SB=-3.330e+02 GT:AD:DP:GQ:PL 0/1:230,123:355:99:1368,0,4884 chrVII 6997 . A G 1817.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;DP=397;Dels=0.00;FS=27.930;HaplotypeScore=38.0823;MLEAC=1;MLEAF=0.500;MQ=37.30;MQ0=22;MQRankSum=-4.762;QD=4.58;ReadPosRankSum=-2.053;SB=-6.340e+02 GT:AD:DP:GQ:PL 0/1:250,144:397:99:1847,0,4486 chrVII 8178 . G A 1214.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.979;DP=197;Dels=0.00;FS=2.184;HaplotypeScore=14.3423;MLEAC=1;MLEAF=0.500;MQ=51.16;MQ0=54;MQRankSum=0.082;QD=6.16;ReadPosRankSum=-1.111;SB=-5.780e+02 GT:AD:DP:GQ:PL 0/1:102,91:197:99:1244,0,1364 chrVII 8659 . A C 1609.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.907;DP=338;Dels=0.00;FS=221.306;HaplotypeScore=26.2351;MLEAC=1;MLEAF=0.500;MQ=54.42;MQ0=0;MQRankSum=1.764;QD=4.76;ReadPosRankSum=-1.941;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:226,112:338:99:1639,0,5263 chrVII 9188 . C T 4486.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.02;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=25.63;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4486,454,0 chrVII 9203 . G T 4352.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.5547;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=25.45;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4352,433,0 chrVII 9264 . G C 3184 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=24.12;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3217,336,0 chrVII 9285 . G T 3192 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=24.55;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3225,333,0 chrVII 9341 . A G 2486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=124;Dels=0.00;FS=2.623;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=-0.730;QD=20.05;ReadPosRankSum=2.390;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2519,261,0 chrVII 9355 . T C 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=126;Dels=0.00;FS=4.213;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=1.564;QD=20.70;ReadPosRankSum=1.704;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2641,279,0 chrVII 9425 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=21.82;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2826,300,0 chrVII 9430 . A G 2841 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=21.69;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2874,300,0 chrVII 9477 . A G 1985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.102;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=68.2515;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=0;MQRankSum=-1.505;QD=20.05;ReadPosRankSum=2.400;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2018,216,0 chrVII 9492 . G T 1626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=92;Dels=0.00;FS=7.080;HaplotypeScore=67.4789;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=0;MQRankSum=0.308;QD=17.67;ReadPosRankSum=2.262;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1659,174,0 chrVII 9493 . A G 1608 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.02;FS=0.000;HaplotypeScore=67.4789;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=0;QD=17.48;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1641,177,0 chrVII 9524 . T C 2532 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=20.10;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2565,270,0 chrVII 9589 . T G 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;MQRankSum=0.603;QD=24.79;ReadPosRankSum=1.629;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3372,354,0 chrVII 9659 . A G 1517 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.56;MQ0=0;QD=18.73;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1550,165,0 chrVII 9663 . C T 1364 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.13;MQ0=0;QD=17.95;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1397,162,0 chrVII 9664 . T C 1355 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=0;QD=18.07;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1388,162,0 chrVII 9710 . T C 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=100;Dels=0.00;FS=3.279;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;MQRankSum=-1.282;QD=19.24;ReadPosRankSum=1.697;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1957,210,0 chrVII 9720 . A G 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;MQRankSum=1.268;QD=20.18;ReadPosRankSum=1.701;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2293,249,0 chrVII 9746 . G C 2934 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=21.73;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2967,318,0 chrVII 9795 . C G 2410 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=21.14;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,110:114:99:2443,261,0 chrVII 9800 . T C 2170 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.66;MQ0=0;QD=21.27;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2203,246,0 chrVII 9823 . G A 1316 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=51.7817;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=0;QD=19.35;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1349,135,0 chrVII 9841 . T C 1576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=81;Dels=0.00;FS=11.074;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.37;MQ0=0;MQRankSum=-0.380;QD=19.46;ReadPosRankSum=2.389;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1609,171,0 chrVII 9859 . G C 1799 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.11;MQ0=0;QD=20.92;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1832,195,0 chrVII 9885 . T A 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=104;Dels=0.00;FS=9.159;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;MQRankSum=-0.719;QD=23.30;ReadPosRankSum=2.855;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2456,249,0 chrVII 9915 . A G 3226.07 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=35.80;MQ0=0;QD=25.01;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3259,351,0 chrVII 10024 . T A 406 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;MQRankSum=-1.223;QD=11.94;ReadPosRankSum=1.529;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:48:439,48,0 chrVII 10028 . C T 383 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.43;MQ0=0;QD=12.35;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:48:416,48,0 chrVII 10029 . G A 362 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=12.07;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:45:395,45,0 chrVII 10045 . A T 539 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.98;MQ0=0;QD=12.25;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:63:572,63,0 chrVII 10048 . A G 561 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=3.010;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.98;MQ0=0;MQRankSum=1.102;QD=12.75;ReadPosRankSum=1.654;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:66:594,66,0 chrVII 10050 . A G 575 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=13.37;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:66:608,66,0 chrVII 10060 . A G 624 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;QD=11.35;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:72:657,72,0 chrVII 10088 . C T 1073 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=69.4223;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=14.70;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1106,114,0 chrVII 10093 . C T 1027 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=74.3714;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=13.51;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1060,114,0 chrVII 10135 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=0;QD=14.24;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1272,132,0 chrVII 10154 . G C 1128 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=15.24;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1161,123,0 chrVII 10166 . G A 790 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=13.39;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:87:823,87,0 chrVII 10182 . T G 678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=9.243;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;MQRankSum=-1.485;QD=16.14;ReadPosRankSum=1.650;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:78:711,78,0 chrVII 10191 . T C 517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=32;Dels=0.00;FS=8.062;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=0;MQRankSum=1.516;QD=16.16;ReadPosRankSum=1.625;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:1,31:32:63:550,63,0 chrVII 10198 . G A 621 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.25;MQ0=0;QD=17.25;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:69:654,69,0 chrVII 10242 . T A 632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=32;Dels=0.00;FS=8.759;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.68;MQ0=0;MQRankSum=0.272;QD=19.75;ReadPosRankSum=2.297;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:2,30:32:69:665,69,0 chrVII 10243 . T C 609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.418;DP=33;Dels=0.00;FS=4.046;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=0;MQRankSum=-1.733;QD=18.45;ReadPosRankSum=1.628;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:69:642,69,0 chrVII 10302 . G A 1220 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.22;MQ0=0;QD=22.18;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1253,132,0 chrVII 10310 . T C 1246 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.73;MQ0=0;QD=20.77;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1279,138,0 chrVII 10346 . C A 1216 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.76;MQ0=7;QD=20.61;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1249,129,0 chrVII 10386 . T A 364 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=7;QD=10.71;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:39:397,39,0 chrVII 10396 . G C 256 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=7;QD=9.48;SB=-2.500e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:30:289,30,0 chrVII 10427 . C T 30.77 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=0;QD=3.85;SB=-2.776e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:6:62,6,0 chrVII 10456 . T A 33.77 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.00;MQ0=0;QD=3.75;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:65,6,0 chrVII 10469 . T A 119.26 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.71;MQ0=0;QD=9.94;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:152,15,0 chrVII 10476 . A T 125.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.107;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.65;MQ0=0;MQRankSum=1.107;QD=11.39;ReadPosRankSum=1.423;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:1,10:11:15:158,15,0 chrVII 10479 . A T 125.26 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.92;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:158,15,0 chrVII 10481 . C A 116.26 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.92;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:149,15,0 chrVII 10496 . C T 140.13 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;QD=8.24;SB=-1.419e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:18:173,18,0 chrVII 10501 . G T 165.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=0;QD=8.69;SB=-7.494e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:21:198,21,0 chrVII 10505 . T A 176.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;MQRankSum=0.908;QD=8.38;ReadPosRankSum=-1.569;SB=-7.495e-02 GT:AD:DP:GQ:PL 1/1:1,20:21:21:209,21,0 chrVII 10508 . G A 210.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;QD=10.00;SB=-4.095e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:243,24,0 chrVII 10518 . A G 270 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.38;MQ0=0;QD=9.64;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:33:303,33,0 chrVII 10538 . T C 438 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=33.19;MQ0=0;QD=12.51;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:51:471,51,0 chrVII 10545 . C T 435 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.31;MQ0=0;QD=12.79;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:48:468,48,0 chrVII 10597 . A G 292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.64;MQ0=0;MQRankSum=0.385;QD=16.22;ReadPosRankSum=1.542;SB=-8.200e+01 GT:AD:DP:GQ:PL 1/1:1,17:18:36:325,36,0 chrVII 10613 . T A 102.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.59;MQ0=0;QD=12.78;SB=-8.030e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:135,15,0 chrVII 10615 . C T 78.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.30;MQ0=0;QD=15.70;SB=-5.655e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:111,12,0 chrVII 10804 . A C 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;QD=8.92;SB=-2.776e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:58,6,0 chrVII 10806 . T A 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;QD=8.92;SB=-2.776e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:58,6,0 chrVII 10812 . C T 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.66;SB=-2.221e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:79,9,0 chrVII 10814 . T C 52.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.727;QD=13.24;ReadPosRankSum=0.727;SB=-2.921e+01 GT:AD:DP:GQ:PL 1/1:1,3:4:9:85,9,0 chrVII 10818 . C T 58.97 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.83;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:91,9,0 chrVII 10823 . T C 114.26 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.04;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:147,15,0 chrVII 10827 . G A 118.26 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.89;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:151,15,0 chrVII 10829 . C G 138.13 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.73;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:18:171,18,0 chrVII 10833 . T C 144.13 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.10;SB=-2.907e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:177,18,0 chrVII 10840 . A G 197.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.42;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:24:230,24,0 chrVII 10843 . T G 193.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.55;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:24:226,24,0 chrVII 10845 . A C 200.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.18;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:24:233,24,0 chrVII 10851 . A G 182.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;QD=12.14;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:215,24,0 chrVII 10852 . A C 198.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;QD=13.20;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:231,24,0 chrVII 10855 . A T 206.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;QD=13.74;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:239,24,0 chrVII 10856 . T C 197.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;QD=13.14;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:230,24,0 chrVII 10867 . A T 186.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=10.94;SB=-4.082e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:24:219,24,0 chrVII 10869 . T C 196.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=11.53;SB=-4.082e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:24:229,24,0 chrVII 10875 . T C 191.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=10.61;SB=-4.082e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:24:224,24,0 chrVII 10877 . C G 203.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=11.28;SB=-4.082e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:24:236,24,0 chrVII 10891 . A G 213.03 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=38.6083;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;QD=10.14;SB=-4.093e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:246,24,0 chrVII 10893 . T A 191.03 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=38.6083;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;QD=9.10;SB=-4.093e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:224,24,0 chrVII 10975 . T A 334 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;QD=11.13;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:42:367,42,0 chrVII 10982 . A T 379 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=12.23;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:42:412,42,0 chrVII 10985 . A G 342 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=10.69;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:42:375,42,0 chrVII 10988 . A C 379 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=10.83;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:45:412,45,0 chrVII 11008 . G A 504 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=11.45;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:54:537,54,0 chrVII 11014 . A G 453 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=10.07;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:51:486,51,0 chrVII 11028 . A G 577 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=26.19;MQ0=3;QD=10.89;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,52:53:69:610,69,0 chrVII 11076 . A G 1709 filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=4;QD=13.89;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:1742,186,0 chrVII 11108 . C T 2419 filter AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=5;QD=17.40;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2452,249,0 chrVII 11149 . A G 3185 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=2;QD=20.55;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3218,342,0 chrVII 11164 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=7.471;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=1;MQRankSum=0.898;QD=23.64;ReadPosRankSum=1.711;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:1,162:167:99:3948,406,0 chrVII 11208 . T C 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;MQRankSum=-0.089;QD=18.93;ReadPosRankSum=2.932;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:3,190:193:99:3653,390,0 chrVII 11217 . T C 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.8953;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;MQRankSum=-0.690;QD=18.45;ReadPosRankSum=2.364;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:3709,396,0 chrVII 11253 . C T 3315.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;QD=16.49;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3315,337,0 chrVII 11256 . T A 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;MQRankSum=-0.606;QD=16.83;ReadPosRankSum=1.715;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:3416,343,0 chrVII 11286 . C T 4079.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.5017;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=18.63;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4079,415,0 chrVII 11371 . A G 6016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=15.1204;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-1.534;QD=24.36;ReadPosRankSum=1.718;SB=-2.907e+03 GT:AD:DP:GQ:PL 1/1:1,244:247:99:6016,637,0 chrVII 11415 . C T 6421.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=18.3564;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=22.85;SB=-3.411e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:6421,679,0 chrVII 11454 . C T 6296.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=16.9142;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=23.85;SB=-3.157e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:6296,643,0 chrVII 11565 . C T 3835.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.1811;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=21.79;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3835,385,0 chrVII 11606 . A G 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.8052;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;MQRankSum=-0.960;QD=20.17;ReadPosRankSum=2.405;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:2,163:167:99:3369,360,0 chrVII 11631 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=19.87;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3133,315,0 chrVII 11635 . G A 3062 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=18.90;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3095,312,0 chrVII 11691 . G A 2710 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=19.64;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2743,274,0 chrVII 11747 . C G 1572 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=69.7119;MLEAC=2;MLEAF=1.00;MQ=35.66;MQ0=0;QD=16.37;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1605,174,0 chrVII 11758 . A T 82.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=68.5844;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=0;MQRankSum=-1.688;QD=1.06;ReadPosRankSum=1.688;SB=-1.765e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:12:115,12,0 chrVII 11760 . G T 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=125.2726;MLEAC=2;MLEAF=1.00;MQ=29.12;MQ0=0;QD=0.99;SB=-1.665e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:12:109,12,0 chrVII 11768 . T C 1119 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=61.6258;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=15.33;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1152,123,0 chrVII 11774 . C A 29.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=52.1914;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=0.44;SB=-2.777e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:6:61,6,0 chrVII 11806 . G A 1018 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=17.25;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1051,108,0 chrVII 11826 . T G 735 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.49;MQ0=0;QD=17.09;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:81:768,81,0 chrVII 11838 . G A 678 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.65;MQ0=0;QD=17.84;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:72:711,72,0 chrVII 11900 . T G 650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=5.772;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.08;MQ0=0;MQRankSum=0.102;QD=19.12;ReadPosRankSum=1.631;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:72:683,72,0 chrVII 11908 . C T 702 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.92;MQ0=0;QD=20.06;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:735,75,0 chrVII 11932 . A G 685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=3.554;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.18;MQ0=0;MQRankSum=0.714;QD=20.15;ReadPosRankSum=1.631;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:84:718,84,0 chrVII 11980 . G A 315 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=21.00;SB=-5.300e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:42:348,42,0 chrVII 11990 . A T 277 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=0;QD=21.31;SB=-4.900e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:39:310,39,0 chrVII 12003 . T C 217 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=19.73;SB=-7.698e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:33:250,33,0 chrVII 12007 . C T 222 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=20.18;SB=-8.198e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:33:255,33,0 chrVII 12020 . A G 104.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=20.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:137,15,0 chrVII 12025 . A G 133.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=19.02;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,7:7:18:166,18,0 chrVII 12062 . G A 115.26 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=10.48;SB=-6.124e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:15:148,15,0 chrVII 12067 . C T 116.26 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=9.69;SB=-1.052e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:15:149,15,0 chrVII 12072 . A G 110.26 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=9.19;SB=-1.012e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:15:143,15,0 chrVII 12074 . T C 111.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=16;Dels=0.00;FS=14.150;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;MQRankSum=-0.303;QD=6.95;ReadPosRankSum=2.850;SB=-1.012e+02 GT:AD:DP:GQ:PL 1/1:4,12:16:15:144,15,0 chrVII 12086 . G A 285 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=10.96;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:33:318,33,0 chrVII 12101 . C T 274 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=0;QD=8.56;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:33:307,33,0 chrVII 12125 . C T 320 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.48;MQ0=0;QD=8.00;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:42:353,42,0 chrVII 12155 . A G 325 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.45;MQ0=0;QD=9.03;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:45:358,45,0 chrVII 12165 . G C 286 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=15.6125;MLEAC=2;MLEAF=1.00;MQ=22.88;MQ0=0;QD=8.67;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:42:319,42,0 chrVII 12180 . A G 145.03 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.81;MQ0=0;QD=8.53;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:24:178,24,0 chrVII 12185 . C T 147.03 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=0;QD=9.80;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:180,24,0 chrVII 12186 . A G 145.03 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=0;QD=9.67;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:178,24,0 chrVII 12187 . T C 143.03 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=0;QD=9.54;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:176,24,0 chrVII 12192 . G A 145.03 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.92;MQ0=0;QD=9.06;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:24:178,24,0 chrVII 12210 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;MQRankSum=0.736;QD=2.01;ReadPosRankSum=0.736;SB=-4.380e+01 GT:AD:DP:GQ:PL 1/1:1,5:6:6:43,6,0 chrVII 12269 . C T 32.97 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=0;QD=1.94;SB=-2.298e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:65,9,0 chrVII 12277 . A G 228 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=8.14;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:33:261,33,0 chrVII 12322 . A C 820 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.47;MQ0=0;QD=13.02;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:853,105,0 chrVII 12329 . G T 913 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;QD=13.04;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:946,111,0 chrVII 12339 . A C 899 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.26;MQ0=0;QD=12.15;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:932,111,0 chrVII 12355 . A G 1007 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.55;MQ0=0;QD=13.43;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1040,120,0 chrVII 12386 . G T 409 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;QD=8.35;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,46:49:48:442,48,0 chrVII 12387 . T A 392 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;QD=8.52;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:48:425,48,0 chrVII 12388 . G T 404 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;QD=8.78;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:48:437,48,0 chrVII 12396 . T A 411 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.65;MQ0=0;QD=7.34;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:48:444,48,0 chrVII 12436 . G C 319 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.19;MQ0=0;QD=5.80;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:39:352,39,0 chrVII 12448 . A G 315 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.95;MQ0=0;QD=5.34;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:39:348,39,0 chrVII 12454 . T C 320 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=5.82;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:39:353,39,0 chrVII 12455 . G A 320 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=5.82;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:39:353,39,0 chrVII 12479 . G A 777 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.88;MQ0=0;QD=10.79;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:87:810,87,0 chrVII 12505 . G A 1590 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=17.67;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1623,168,0 chrVII 12524 . A T 2076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;MQRankSum=-0.815;QD=20.35;ReadPosRankSum=1.087;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2109,213,0 chrVII 12565 . A T 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=3.229;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;MQRankSum=0.227;QD=24.45;ReadPosRankSum=1.704;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3016,304,0 chrVII 12610 . T C 3336.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=0;QD=23.83;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3336,354,0 chrVII 12663 . T C 3949.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.8835;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;QD=24.08;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3949,414,0 chrVII 12742 . G A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=20.88;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3445,357,0 chrVII 12756 . T C 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.406;DP=166;Dels=0.00;FS=5.262;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.25;MQ0=0;MQRankSum=-0.741;QD=18.54;ReadPosRankSum=3.395;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:4,160:166:99:3110,333,0 chrVII 12769 . A G 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=167;Dels=0.00;FS=8.237;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.99;MQ0=0;MQRankSum=-0.184;QD=18.25;ReadPosRankSum=2.420;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3081,330,0 chrVII 12778 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=18.74;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3218,327,0 chrVII 12793 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=42.87;MQ0=0;QD=18.52;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2996,318,0 chrVII 12853 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=21.14;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3120,321,0 chrVII 12857 . C T 3210.99 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=22.30;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3244,324,0 chrVII 12874 . A G 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=144;Dels=0.00;FS=5.452;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=42.87;MQ0=0;MQRankSum=-1.303;QD=19.12;ReadPosRankSum=2.951;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:2786,303,0 chrVII 12884 . T C 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=4.299;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;MQRankSum=-1.241;QD=18.97;ReadPosRankSum=1.638;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2840,318,0 chrVII 12937 . T C 3087 SnpCluster AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=0;QD=18.49;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3120,339,0 chrVII 12940 . T C 3211.99 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=19.47;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3245,342,0 chrVII 12946 . C T 3225.28 SnpCluster AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=44.99;MQ0=0;QD=19.31;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3258,354,0 chrVII 13009 . T C 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=4.893;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=41.93;MQ0=0;MQRankSum=-0.944;QD=21.67;ReadPosRankSum=1.708;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3175,351,0 chrVII 13045 . C T 2318 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=22.08;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2351,258,0 chrVII 13050 . T C 2091 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=0;QD=20.91;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2124,234,0 chrVII 13066 . C T 2001 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=20.01;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2034,222,0 chrVII 13105 . A G 1678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=3.545;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;MQRankSum=-0.748;QD=17.66;ReadPosRankSum=1.659;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1711,186,0 chrVII 13111 . T C 1630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;MQRankSum=-0.472;QD=16.46;ReadPosRankSum=1.697;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1663,180,0 chrVII 13120 . T C 1740 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=0;QD=16.73;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1773,192,0 chrVII 13185 . C T 1637 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;QD=17.05;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1670,183,0 chrVII 13197 . G A 1597 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;QD=19.01;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1630,171,0 chrVII 13203 . T C 1473 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;QD=18.41;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1506,165,0 chrVII 13216 . T C 1477 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=18.01;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1510,165,0 chrVII 13261 . T A 1360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=75;Dels=0.00;FS=3.069;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;MQRankSum=-1.003;QD=18.13;ReadPosRankSum=2.253;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1393,144,0 chrVII 13281 . C T 1780 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=22.25;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1813,183,0 chrVII 13343 . A G 3017 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=24.73;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3050,315,0 chrVII 13446 . A G 2611 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=22.90;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2644,273,0 chrVII 13470 . T C 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.946;QD=22.39;ReadPosRankSum=1.703;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,118:122:99:2765,291,0 chrVII 13749 . T C 5882.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=11.4522;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.25;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:5882,625,0 chrVII 14737 . T A 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-1.086;QD=25.62;ReadPosRankSum=1.703;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:3056,304,0 chrVII 14790 . A G 3039 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.2417;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.51;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3072,327,0 chrVII 14981 . A G 2660 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.3772;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.35;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2693,279,0 chrVII 15008 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3291;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.34;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2832,286,0 chrVII 15244 . A G 5283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=212;Dels=0.00;FS=4.084;HaplotypeScore=18.1522;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.099;QD=24.92;ReadPosRankSum=1.683;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:5283,553,0 chrVII 15337 . A G 6969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=290;Dels=0.00;FS=6.637;HaplotypeScore=17.4290;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.676;QD=24.03;ReadPosRankSum=2.389;SB=-3.623e+03 GT:AD:DP:GQ:PL 1/1:2,283:290:99:6969,721,0 chrVII 15420 . C G 6092.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=23.61;SB=-3.297e+03 GT:AD:DP:GQ:PL 1/1:0,252:258:99:6092,637,0 chrVII 15437 . T C 6088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.224;DP=274;Dels=0.00;FS=9.013;HaplotypeScore=11.1939;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.439;QD=22.22;ReadPosRankSum=3.410;SB=-3.418e+03 GT:AD:DP:GQ:PL 1/1:4,268:274:99:6088,649,0 chrVII 15512 . C T 6755.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=8.8764;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=22.29;SB=-4.062e+03 GT:AD:DP:GQ:PL 1/1:0,302:303:99:6755,691,0 chrVII 15518 . C T 6355.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=4.7841;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=20.90;SB=-4.183e+03 GT:AD:DP:GQ:PL 1/1:0,302:304:99:6355,643,0 chrVII 15533 . T C 5466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=291;Dels=0.00;FS=9.582;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;MQRankSum=-0.969;QD=18.78;ReadPosRankSum=2.935;SB=-3.669e+03 GT:AD:DP:GQ:PL 1/1:3,288:291:99:5466,565,0 chrVII 15557 . A G 6019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=310;Dels=0.00;FS=3.024;HaplotypeScore=8.2865;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=0.468;QD=19.42;ReadPosRankSum=2.434;SB=-4.123e+03 GT:AD:DP:GQ:PL 1/1:2,305:310:99:6019,640,0 chrVII 15596 . A G 6641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=317;Dels=0.00;FS=3.358;HaplotypeScore=18.8947;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.577;QD=20.95;ReadPosRankSum=1.710;SB=-3.773e+03 GT:AD:DP:GQ:PL 1/1:1,311:317:99:6641,688,0 chrVII 15647 . T C 7741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=309;Dels=0.00;FS=5.202;HaplotypeScore=16.4382;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.724;QD=25.05;ReadPosRankSum=2.945;SB=-3.155e+03 GT:AD:DP:GQ:PL 1/1:3,306:309:99:7741,820,0 chrVII 15689 . T C 8371.01 PASS AC=2;AF=1.00;AN=2;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=24.48;SB=-4.360e+03 GT:AD:DP:GQ:PL 1/1:0,340:342:99:8371,865,0 chrVII 15770 . T C 7172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.394;DP=335;Dels=0.00;FS=8.826;HaplotypeScore=26.1697;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.274;QD=21.41;ReadPosRankSum=3.368;SB=-3.778e+03 GT:AD:DP:GQ:PL 1/1:4,329:335:99:7172,766,0 chrVII 15803 . C T 9157.01 filter AC=2;AF=1.00;AN=2;DP=388;Dels=0.00;FS=0.000;HaplotypeScore=25.6074;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=23.60;SB=-5.189e+03 GT:AD:DP:GQ:PL 1/1:0,388:388:99:9157,917,0 chrVII 15848 . T C 10465.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.334;DP=447;Dels=0.00;FS=8.817;HaplotypeScore=23.4687;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.119;QD=23.41;ReadPosRankSum=3.412;SB=-5.393e+03 GT:AD:DP:GQ:PL 1/1:4,443:447:99:10465,1108,0 chrVII 15887 . C T 9617.01 filter AC=2;AF=1.00;AN=2;DP=423;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=22.74;SB=-4.957e+03 GT:AD:DP:GQ:PL 1/1:0,423:423:99:9617,989,0 chrVII 15899 . T A 9194.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=403;Dels=0.00;FS=0.000;HaplotypeScore=6.4731;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=-0.924;QD=22.81;ReadPosRankSum=1.706;SB=-5.092e+03 GT:AD:DP:GQ:PL 1/1:1,402:403:99:9194,932,0 chrVII 16079 . T C 7635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=336;Dels=0.00;FS=5.868;HaplotypeScore=10.6049;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.052;QD=22.72;ReadPosRankSum=1.670;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:1,335:336:99:7635,778,0 chrVII 16087 . T G 7573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.844;DP=332;Dels=0.00;FS=3.346;HaplotypeScore=5.4565;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.048;QD=22.81;ReadPosRankSum=0.375;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:2,328:332:99:7573,767,0 chrVII 16175 . A C 4712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=191;Dels=0.00;FS=2.625;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=1.137;QD=24.67;ReadPosRankSum=2.320;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:2,187:191:99:4712,493,0 chrVII 16202 . A C 4606.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=24.12;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4606,490,0 chrVII 16482 . T C 2382 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=0;QD=18.47;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2415,255,0 chrVII 16485 . A G 2163 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.829;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=35.32;MQ0=0;MQRankSum=-1.543;QD=16.77;ReadPosRankSum=1.705;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2196,231,0 chrVII 16489 . T G 2040 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=33.99;MQ0=0;QD=16.59;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2073,219,0 chrVII 16503 . C T 1450 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.36;MQ0=0;QD=14.95;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1483,147,0 chrVII 16504 . G T 1410 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.78;MQ0=0;QD=14.39;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1443,147,0 chrVII 16509 . T C 1421 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.188;DP=111;Dels=0.00;FS=8.530;HaplotypeScore=4.3613;MLEAC=2;MLEAF=1.00;MQ=35.05;MQ0=0;MQRankSum=-2.239;QD=12.80;ReadPosRankSum=3.315;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:4,107:111:99:1454,150,0 chrVII 16556 . C T 2393 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=19.14;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2426,246,0 chrVII 16563 . A G 2381 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=2.8271;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=17.25;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2414,261,0 chrVII 16596 . C T 3734.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=23.78;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3734,376,0 chrVII 16612 . C T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=20.84;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3501,369,0 chrVII 16638 . T C 3026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=160;Dels=0.00;FS=9.626;HaplotypeScore=148.4402;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;MQRankSum=0.408;QD=18.91;ReadPosRankSum=2.956;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:3,155:160:99:3059,315,0 chrVII 16681 . T C 2698 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=17.99;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2731,297,0 chrVII 16762 . C A 2587 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=22.30;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2620,273,0 chrVII 16765 . T C 2471 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=21.49;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2504,258,0 chrVII 16807 . T A 2010 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=19.71;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2043,213,0 chrVII 16848 . G C 1384 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=18.21;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1417,147,0 chrVII 16905 . T C 955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=9.9887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.096;QD=14.92;ReadPosRankSum=2.296;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:988,105,0 chrVII 16946 . T A 781 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=15.7327;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=11.83;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:81:814,81,0 chrVII 16997 . G A 314 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=24.4721;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=8.97;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:36:347,36,0 chrVII 17017 . C T 232.01 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=7.9318;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=12.89;SB=-6.002e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:27:265,27,0 chrVII 17039 . A G 542 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=38.57;MQ0=0;QD=18.69;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:60:575,60,0 chrVII 17111 . T C 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;MQRankSum=-1.267;QD=25.70;ReadPosRankSum=1.690;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:2140,219,0 chrVII 17166 . G T 1375 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;QD=24.55;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1408,147,0 chrVII 17176 . T C 1039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.69;MQ0=0;MQRankSum=1.668;QD=19.24;ReadPosRankSum=1.668;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1072,120,0 chrVII 17223 . C T 712 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=27.26;MQ0=0;QD=11.48;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:84:745,84,0 chrVII 17232 . T G 699 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.79;MQ0=0;MQRankSum=0.595;QD=10.43;ReadPosRankSum=1.681;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:81:732,81,0 chrVII 17234 . A G 654 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=7.404;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.91;MQ0=0;MQRankSum=-0.997;QD=9.91;ReadPosRankSum=1.680;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:78:687,78,0 chrVII 17240 . C A 693 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.86;MQ0=0;QD=9.36;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:81:726,81,0 chrVII 17260 . G A 1205 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=14.18;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1238,132,0 chrVII 17261 . C T 1148 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=13.51;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1181,129,0 chrVII 17265 . C T 1331 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=12.80;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1364,141,0 chrVII 17289 . G C 1784 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=13.72;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1817,189,0 chrVII 17299 . G A 1918 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=14.87;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1951,198,0 chrVII 17314 . A C 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=4.010;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=29.67;MQ0=0;MQRankSum=-1.118;QD=13.29;ReadPosRankSum=1.708;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:1907,204,0 chrVII 17321 . T A 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.07;MQ0=0;MQRankSum=-1.617;QD=13.86;ReadPosRankSum=1.709;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2126,213,0 chrVII 17346 . A C 1905 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.17;MQ0=0;QD=12.62;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:1938,204,0 chrVII 17359 . A G 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=146;Dels=0.00;FS=9.011;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=35.02;MQ0=0;MQRankSum=0.232;QD=13.44;ReadPosRankSum=2.415;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:2,141:146:99:1995,210,0 chrVII 17393 . T G 1907 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.83;MQ0=0;QD=13.92;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1940,216,0 chrVII 17401 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;QD=14.91;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2001,210,0 chrVII 17412 . A G 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=7.261;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=36.05;MQ0=0;MQRankSum=0.347;QD=14.64;ReadPosRankSum=2.408;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:1760,192,0 chrVII 17428 . T A 1918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=35.71;MQ0=0;MQRankSum=1.059;QD=17.76;ReadPosRankSum=1.668;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1951,207,0 chrVII 17611 . G A 2303 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=39.77;MQ0=0;QD=22.14;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2336,237,0 chrVII 17668 . A G 1689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=32.77;MQ0=0;MQRankSum=-1.276;QD=22.22;ReadPosRankSum=1.641;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1722,183,0 chrVII 17711 . C T 1018 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=18.18;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1051,105,0 chrVII 17713 . A G 933 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=16.66;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:966,105,0 chrVII 17724 . C A 753 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=15.69;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:81:786,81,0 chrVII 17785 . G C 1040 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.8547;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;QD=17.93;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1073,111,0 chrVII 17798 . A T 1293 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=41.36;MQ0=0;QD=19.59;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1326,132,0 chrVII 17843 . A C 769 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=14.24;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:90:802,90,0 chrVII 17856 . G C 788 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;QD=14.33;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:87:821,87,0 chrVII 17862 . T A 807 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.91;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:90:840,90,0 chrVII 17866 . A C 735 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.786;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.039;QD=13.36;ReadPosRankSum=1.669;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:81:768,81,0 chrVII 17874 . T G 677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;MQRankSum=-1.664;QD=13.27;ReadPosRankSum=1.664;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:78:710,78,0 chrVII 17888 . T C 554 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;QD=13.51;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:63:587,63,0 chrVII 17897 . A T 531 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=0;QD=13.27;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:63:564,63,0 chrVII 17953 . A C 1057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=50;Dels=0.00;FS=3.010;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.05;MQ0=0;MQRankSum=-0.025;QD=21.14;ReadPosRankSum=2.350;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:2,47:50:99:1090,117,0 chrVII 17958 . G A 1223 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=38.90;MQ0=0;QD=22.24;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1256,129,0 chrVII 18008 . C A 1475 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.19;MQ0=0;QD=25.43;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1508,156,0 chrVII 18023 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.41;MQ0=0;QD=26.08;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1754,174,0 chrVII 18117 . T C 1803 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.53;MQ0=0;QD=25.76;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1836,198,0 chrVII 18140 . C T 1093 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.89;MQ0=0;QD=22.77;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,46:48:99:1126,117,0 chrVII 18155 . T A 842 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=30.9283;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=20.05;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:875,96,0 chrVII 18158 . T G 728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=3.547;HaplotypeScore=34.3506;MLEAC=2;MLEAF=1.00;MQ=33.90;MQ0=0;MQRankSum=0.443;QD=16.93;ReadPosRankSum=1.652;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:84:761,84,0 chrVII 18197 . G A 1232 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.39;MQ0=0;QD=23.25;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1265,135,0 chrVII 18215 . C G 1328 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.87;MQ0=0;QD=22.13;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1361,153,0 chrVII 18251 . A G 1154 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=30.48;MQ0=0;QD=16.72;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1187,135,0 chrVII 18261 . G A 1024 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.314;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=29.65;MQ0=0;MQRankSum=-1.553;QD=17.66;ReadPosRankSum=-1.434;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:95:1057,95,0 chrVII 18263 . C T 1057 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.87;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1090,120,0 chrVII 18271 . G A 1184 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=0;QD=17.41;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1217,132,0 chrVII 18313 . A C 1198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=0;MQRankSum=-1.370;QD=17.88;ReadPosRankSum=1.681;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1231,132,0 chrVII 18315 . T G 1136 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=17.21;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1169,129,0 chrVII 18342 . C T 924 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=0;QD=15.93;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:957,108,0 chrVII 18346 . C T 930 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.96;MQ0=0;QD=15.25;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:963,102,0 chrVII 18380 . A G 494 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=11.818;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;MQRankSum=-2.407;QD=8.67;ReadPosRankSum=2.320;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:60:527,60,0 chrVII 18382 . G T 475 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=8.80;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:57:508,57,0 chrVII 18388 . T C 444 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=7.40;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:54:477,54,0 chrVII 18389 . C G 489 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=8.15;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:60:522,60,0 chrVII 18418 . A G 653 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;MQRankSum=0.192;QD=9.07;ReadPosRankSum=1.684;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:78:686,78,0 chrVII 18425 . A G 651 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.30;MQ0=0;QD=8.80;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:78:684,78,0 chrVII 18426 . A T 667 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.30;MQ0=0;QD=9.01;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:75:700,75,0 chrVII 18452 . A G 489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=9.271;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=25.97;MQ0=0;MQRankSum=0.255;QD=7.76;ReadPosRankSum=2.372;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:60:522,60,0 chrVII 18461 . T A 324 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=21.7939;MLEAC=2;MLEAF=1.00;MQ=25.24;MQ0=0;QD=7.04;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:39:357,39,0 chrVII 18466 . A T 130.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.011;DP=48;Dels=0.00;FS=2.536;HaplotypeScore=1.9874;MLEAC=2;MLEAF=1.00;MQ=24.25;MQ0=0;MQRankSum=-0.735;QD=2.71;ReadPosRankSum=-2.311;SB=-1.461e+02 GT:AD:DP:GQ:PL 1/1:30,18:48:18:163,18,0 chrVII 18516 . A T 850 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=0;QD=14.41;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:96:883,96,0 chrVII 18535 . C T 1008 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=15.27;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1041,114,0 chrVII 18545 . A T 1087 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.80;MQ0=0;QD=15.10;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1120,126,0 chrVII 18561 . G T 1499 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=0;QD=17.43;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1532,165,0 chrVII 18598 . A C 1400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.651;DP=93;Dels=0.00;FS=1.825;HaplotypeScore=4.9514;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=0;MQRankSum=0.017;QD=15.05;ReadPosRankSum=3.634;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:5,87:93:99:1433,168,0 chrVII 18599 . C A 1402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=91;Dels=0.01;FS=6.676;HaplotypeScore=3.3741;MLEAC=2;MLEAF=1.00;MQ=36.42;MQ0=0;MQRankSum=-1.382;QD=15.41;ReadPosRankSum=2.203;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1435,168,0 chrVII 18654 . T G 1692 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=10.4753;MLEAC=2;MLEAF=1.00;MQ=39.27;MQ0=0;QD=19.91;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1725,192,0 chrVII 18690 . A G 1386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=4.445;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;MQRankSum=-0.866;QD=21.66;ReadPosRankSum=1.678;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1419,168,0 chrVII 18699 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=0;QD=20.87;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1348,156,0 chrVII 18729 . C T 1742 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=0;QD=20.99;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1775,195,0 chrVII 18748 . T C 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.4666;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;MQRankSum=-1.732;QD=22.03;ReadPosRankSum=1.666;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2324,249,0 chrVII 18909 . A G 2113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=4.535;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;MQRankSum=1.122;QD=16.90;ReadPosRankSum=1.704;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2146,243,0 chrVII 18919 . C T 1819 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;QD=15.82;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:1852,201,0 chrVII 18921 . T C 1813 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=116;Dels=0.00;FS=2.576;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.97;MQ0=0;MQRankSum=-0.365;QD=15.63;ReadPosRankSum=2.940;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:3,113:116:99:1846,198,0 chrVII 18929 . T C 1679 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.186;DP=129;Dels=0.00;FS=5.087;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;MQRankSum=-2.058;QD=13.02;ReadPosRankSum=3.336;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:4,125:129:99:1712,186,0 chrVII 18954 . T A 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;MQRankSum=-0.245;QD=18.27;ReadPosRankSum=1.712;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3157,318,0 chrVII 18987 . C G 4296.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.56;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4296,474,0 chrVII 19051 . A T 4900.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=25.13;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4900,493,0 chrVII 19168 . C T 4151.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=22.32;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4151,447,0 chrVII 19173 . T C 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=180;Dels=0.00;FS=5.237;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;MQRankSum=-0.225;QD=22.28;ReadPosRankSum=1.693;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:4011,432,0 chrVII 19222 . G A 4784.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=22.36;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4784,502,0 chrVII 19226 . C T 4671.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=22.46;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,203:208:99:4671,478,0 chrVII 19266 . A G 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=0.619;QD=23.04;ReadPosRankSum=1.711;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3802,396,0 chrVII 19332 . A G 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=3.054;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;MQRankSum=-0.840;QD=24.25;ReadPosRankSum=1.698;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2482,261,0 chrVII 19374 . G A 2331 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.16;MQ0=0;QD=24.54;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2364,243,0 chrVII 19378 . A G 2198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.80;MQ0=0;MQRankSum=-1.253;QD=23.38;ReadPosRankSum=1.695;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2231,237,0 chrVII 19402 . A G 1490 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;QD=17.95;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1523,174,0 chrVII 19409 . A G 1404 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=30.58;MQ0=0;QD=18.47;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1437,159,0 chrVII 19443 . C T 1094 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7516;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=12.72;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1127,120,0 chrVII 19445 . A G 938 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.163;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.6964;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=0;MQRankSum=2.049;QD=10.78;ReadPosRankSum=2.393;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:2,84:87:99:971,108,0 chrVII 19451 . G A 390.34 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.696;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9288;MLEAC=1;MLEAF=0.500;MQ=28.14;MQ0=0;MQRankSum=-0.102;QD=4.34;ReadPosRankSum=4.536;SB=-7.772e+02 GT:AD:DP:GQ:PL 0/1:16,74:90:8:420,0,8 chrVII 19473 . T G 1011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=114;Dels=0.00;FS=3.015;HaplotypeScore=2.6221;MLEAC=2;MLEAF=1.00;MQ=38.22;MQ0=0;MQRankSum=-2.104;QD=8.87;ReadPosRankSum=2.385;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:1044,111,0 chrVII 19481 . C T 1237 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8806;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=9.66;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1270,138,0 chrVII 19530 . G C 2512 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=17.57;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2545,267,0 chrVII 19575 . A G 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.933;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;MQRankSum=-0.627;QD=19.43;ReadPosRankSum=1.695;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1859,195,0 chrVII 19599 . T C 896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;MQRankSum=-1.064;QD=10.80;ReadPosRankSum=1.607;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:929,102,0 chrVII 19600 . C A 956 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.46;MQ0=0;QD=11.80;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:989,108,0 chrVII 19636 . T C 1532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;MQRankSum=-1.869;QD=14.45;ReadPosRankSum=2.241;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1565,168,0 chrVII 19660 . T C 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;MQRankSum=-1.388;QD=16.61;ReadPosRankSum=1.708;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2375,249,0 chrVII 19669 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.6487;MLEAC=2;MLEAF=1.00;MQ=41.23;MQ0=0;QD=17.10;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:2735,291,0 chrVII 19681 . T C 3103 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.7778;MLEAC=2;MLEAF=1.00;MQ=42.90;MQ0=0;QD=18.92;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3136,324,0 chrVII 19825 . T A 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=107;Dels=0.00;FS=5.250;HaplotypeScore=8.9807;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;MQRankSum=-0.840;QD=19.18;ReadPosRankSum=2.689;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:99:2085,222,0 chrVII 19826 . A G 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=109;Dels=0.00;FS=2.586;HaplotypeScore=8.9807;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=0.509;QD=18.86;ReadPosRankSum=2.676;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2089,222,0 chrVII 19896 . A G 2167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.9386;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;MQRankSum=0.253;QD=22.57;ReadPosRankSum=1.660;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2200,234,0 chrVII 20451 . T C 3937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.097;QD=24.45;ReadPosRankSum=1.711;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3937,412,0 chrVII 21020 . T G 155.03 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=6.0893;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;QD=1.22;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:24:188,24,0 chrVII 21021 . C A 109.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.0893;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;MQRankSum=-1.455;QD=0.87;ReadPosRankSum=1.649;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:18:142,18,0 chrVII 21023 . G A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0362;MLEAC=2;MLEAF=1.00;MQ=30.24;MQ0=0;MQRankSum=-1.557;QD=0.15;ReadPosRankSum=1.703;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:6:49,6,0 chrVII 21025 . A C 287 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0362;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=0;MQRankSum=-1.703;QD=2.43;ReadPosRankSum=1.703;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:42:320,42,0 chrVII 21035 . G A 1918 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=14.64;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1951,204,0 chrVII 21039 . A C 1715 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=126;Dels=0.00;FS=2.609;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;MQRankSum=-0.545;QD=13.61;ReadPosRankSum=2.251;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:2,122:126:99:1748,186,0 chrVII 21041 . A G 1594 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;MQRankSum=0.986;QD=12.96;ReadPosRankSum=2.389;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:2,119:123:99:1627,174,0 chrVII 21088 . C T 1977 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.21;MQ0=0;QD=16.34;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2010,201,0 chrVII 21096 . G A 1920 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=15.61;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:1953,201,0 chrVII 21169 . C A 3199 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=19.16;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3232,345,0 chrVII 21172 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.6683;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;QD=19.02;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3310,351,0 chrVII 21218 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=39.01;MQ0=0;QD=16.33;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:2825,312,0 chrVII 21225 . T C 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.374;DP=165;Dels=0.00;FS=5.262;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=0;MQRankSum=0.037;QD=15.57;ReadPosRankSum=3.385;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:4,161:165:99:2602,294,0 chrVII 21241 . G A 2732 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=0;QD=17.29;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2765,309,0 chrVII 21271 . C T 3162 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.8516;MLEAC=2;MLEAF=1.00;MQ=30.67;MQ0=0;QD=18.38;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3195,351,0 chrVII 21306 . C A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=33.53;MQ0=0;QD=25.46;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3972,414,0 chrVII 21318 . C A 4224.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.3898;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=0;QD=25.60;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4224,432,0 chrVII 21409 . T C 4028.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.0105;MLEAC=2;MLEAF=1.00;MQ=39.26;MQ0=0;QD=20.87;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4028,435,0 chrVII 21412 . A G 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=189;Dels=0.01;FS=2.858;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=38.85;MQ0=0;MQRankSum=-1.143;QD=21.02;ReadPosRankSum=2.371;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:3973,435,0 chrVII 21445 . T G 3171 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=38.86;MQ0=0;QD=20.59;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3204,351,0 chrVII 21464 . C A 2480 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.15;MQ0=0;QD=18.10;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2513,276,0 chrVII 21492 . G A 1826 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.7687;MLEAC=2;MLEAF=1.00;MQ=29.99;MQ0=0;QD=18.08;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1859,198,0 chrVII 21493 . A T 1682 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.748;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=0;MQRankSum=-0.901;QD=16.82;ReadPosRankSum=3.748;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:5,95:100:99:1715,195,0 chrVII 21497 . A G 1776 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;MQRankSum=1.192;QD=16.29;ReadPosRankSum=1.700;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1809,195,0 chrVII 21504 . C T 1841 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;QD=16.15;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1874,198,0 chrVII 21513 . G C 1803 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=497.7517;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=16.10;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1836,195,0 chrVII 21538 . T C 1675 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.04;MQ0=0;QD=13.09;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1708,192,0 chrVII 21565 . C T 1904 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.36;MQ0=0;QD=13.13;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:1937,201,0 chrVII 21569 . G A 1663 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.52;MQ0=0;QD=12.05;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1696,171,0 chrVII 21574 . G A 1699 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.58;MQ0=0;QD=12.31;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1732,174,0 chrVII 21579 . A T 1706 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;QD=12.10;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1739,174,0 chrVII 21586 . T A 1546 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=30.79;MQ0=0;QD=11.28;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1579,159,0 chrVII 21602 . A G 1776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.92;MQ0=0;MQRankSum=-0.749;QD=12.42;ReadPosRankSum=1.708;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:1809,195,0 chrVII 21626 . G A 2193 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.66;MQ0=0;QD=15.55;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2226,225,0 chrVII 21658 . C T 1958 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.72;MQ0=0;QD=13.99;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1991,204,0 chrVII 21694 . C T 1676 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6901;MLEAC=2;MLEAF=1.00;MQ=33.84;MQ0=0;QD=11.40;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,145:147:99:1709,174,0 chrVII 21704 . G A 1246 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3999;MLEAC=2;MLEAF=1.00;MQ=29.56;MQ0=0;QD=9.30;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1279,141,0 chrVII 21705 . T C 1312 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9773;MLEAC=2;MLEAF=1.00;MQ=29.56;MQ0=0;MQRankSum=0.956;QD=9.72;ReadPosRankSum=2.413;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:2,133:135:99:1345,144,0 chrVII 21710 . G A 1089 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3999;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=8.57;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1122,126,0 chrVII 21712 . T A 1282 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.2940;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=9.71;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1315,135,0 chrVII 21719 . T G 1321 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.395;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.2505;MLEAC=2;MLEAF=1.00;MQ=29.74;MQ0=0;MQRankSum=-3.068;QD=9.50;ReadPosRankSum=3.395;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:4,135:139:99:1354,144,0 chrVII 21722 . T A 1343 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=31.06;MQ0=0;QD=9.39;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,142:143:99:1376,141,0 chrVII 21919 . G C 4810.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=16.5674;MLEAC=2;MLEAF=1.00;MQ=42.22;MQ0=0;QD=21.38;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4810,505,0 chrVII 22018 . A T 2488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.140;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=37.54;MQ0=0;MQRankSum=1.393;QD=18.43;ReadPosRankSum=2.377;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2521,267,0 chrVII 22028 . G A 2594 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;QD=18.66;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2627,264,0 chrVII 22031 . C T 2576 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;QD=18.53;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2609,259,0 chrVII 22035 . G A 2422 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=5.733;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=36.71;MQ0=0;MQRankSum=-1.281;QD=16.59;ReadPosRankSum=1.305;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2455,249,0 chrVII 22039 . A G 2359 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=37.88;MQ0=0;MQRankSum=-0.988;QD=16.38;ReadPosRankSum=2.415;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2392,252,0 chrVII 22111 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=20.05;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2720,288,0 chrVII 22154 . T G 2157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.745;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-1.270;QD=23.70;ReadPosRankSum=1.694;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2190,234,0 chrVII 22192 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=21.50;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2247,225,0 chrVII 22195 . A T 2170 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=21.07;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2203,222,0 chrVII 22309 . G A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=27.00;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4077,412,0 chrVII 22661 . A G 4525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=190;Dels=0.00;FS=8.466;HaplotypeScore=16.9704;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.247;QD=23.82;ReadPosRankSum=2.346;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4525,483,0 chrVII 22985 . G A 6331.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=13.4974;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=24.35;SB=-3.196e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:6331,640,0 chrVII 23122 . C T 5261.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=7.9145;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=20.55;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5261,538,0 chrVII 23134 . T C 4557.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=18.01;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:4557,492,0 chrVII 23140 . G A 4886.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=5.0017;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=19.70;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:4886,490,0 chrVII 23215 . G T 3996.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=19.68;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:3996,418,0 chrVII 23231 . C T 4435.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=19.03;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4435,448,0 chrVII 23244 . T C 4735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=230;Dels=0.00;FS=4.222;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;MQRankSum=0.045;QD=20.59;ReadPosRankSum=1.702;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:4735,487,0 chrVII 23332 . T C 2802 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=18.93;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2835,303,0 chrVII 23406 . T C 3339.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.8848;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=23.03;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3339,357,0 chrVII 23602 . A G 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=151;Dels=0.00;FS=3.030;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.724;QD=21.79;ReadPosRankSum=2.319;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3290,340,0 chrVII 23885 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=24.85;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3189,322,0 chrVII 23922 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=23.77;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,118:124:99:2980,295,0 chrVII 24075 . C T 3433.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.96;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3433,346,0 chrVII 24525 . T C 6275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.806;DP=243;Dels=0.00;FS=2.468;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.021;QD=25.82;ReadPosRankSum=2.946;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:3,240:243:99:6275,658,0 chrVII 25442 . C T 2731 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2764,276,0 chrVII 25663 . A G 2669 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2702,276,0 chrVII 26299 . A G 5011.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.9011;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.33;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:5011,514,0 chrVII 26801 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=24.82;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3425,346,0 chrVII 27002 . A G 4169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=3.081;HaplotypeScore=8.3157;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.328;QD=22.41;ReadPosRankSum=1.713;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4169,447,0 chrVII 28371 . C T 4213.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.93;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4213,418,0 chrVII 28799 . C G 2749 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.8573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2782,288,0 chrVII 29361 . C T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.8557;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.13;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3377,334,0 chrVII 29398 . C T 3586.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.3686;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.08;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3586,358,0 chrVII 31914 . G A 4593.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.9443;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.55;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:4593,454,0 chrVII 33274 . C T 2543 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.43;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2576,258,0 chrVII 33393 . A T 4201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.953;QD=26.26;ReadPosRankSum=1.689;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:4201,418,0 chrVII 33441 . G A 3464.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3464,343,0 chrVII 34423 . C G 2516 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=19.97;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2549,270,0 chrVII 34691 . T C 2952 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.36;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2985,312,0 chrVII 34702 . C A 2863 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.37;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2896,289,0 chrVII 34805 . G A 2777 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.02;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2810,280,0 chrVII 34808 . A G 2759 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=18.64;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2792,294,0 chrVII 35488 . T C 2737 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2770,288,0 chrVII 35543 . T C 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=108;Dels=0.00;FS=6.573;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.707;QD=25.16;ReadPosRankSum=2.380;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:2,104:108:99:2750,285,0 chrVII 36180 . A T 5331.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.52;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5331,535,0 chrVII 37655 . A T 3706.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.92;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3706,367,0 chrVII 41263 . C T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=25.89;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3495,349,0 chrVII 41268 . A G 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=0.229;QD=23.44;ReadPosRankSum=1.707;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3221,333,0 chrVII 43204 . A T 596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.807;QD=16.11;ReadPosRankSum=2.810;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:3,34:37:63:629,63,0 chrVII 43308 . T G 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.126;QD=25.09;ReadPosRankSum=2.394;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:2,86:88:99:2241,237,0 chrVII 43400 . A G 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=108;Dels=0.00;FS=14.232;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.817;QD=26.66;ReadPosRankSum=1.699;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:1,105:108:99:2912,306,0 chrVII 43794 . G C 3343.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=22.59;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:3343,348,0 chrVII 43798 . C T 3305.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=23.27;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3305,331,0 chrVII 44099 . C T 4546.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.0411;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=26.58;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4546,466,0 chrVII 44308 . A C 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=2.071;QD=22.95;ReadPosRankSum=2.393;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:2,128:131:99:3039,312,0 chrVII 44796 . A G 3954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=4.466;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.060;QD=23.82;ReadPosRankSum=1.711;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3954,420,0 chrVII 44898 . C T 5227.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=15.0885;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5227,523,0 chrVII 44995 . T C 4150.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.68;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4150,427,0 chrVII 45002 . G A 4180.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=23.75;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4180,412,0 chrVII 45371 . C T 1519 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=15.34;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1552,168,0 chrVII 45399 . G A 2616 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.76;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2649,276,0 chrVII 45537 . C A 4327.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=27.04;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4327,424,0 chrVII 45593 . C T 3660.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.90;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3660,370,0 chrVII 45639 . C T 4301.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.3914;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=24.16;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4301,453,0 chrVII 45669 . A T 5107.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=25.41;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5107,514,0 chrVII 45694 . A G 5029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.3158;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.929;QD=24.29;ReadPosRankSum=1.715;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:5029,526,0 chrVII 45723 . G A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.8690;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=23.31;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3846,399,0 chrVII 46050 . A G 3154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.265;QD=23.02;ReadPosRankSum=2.378;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3187,330,0 chrVII 46197 . C T 2074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.355;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.3627;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.561;QD=20.33;ReadPosRankSum=1.561;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2107,219,0 chrVII 46524 . A G 3084 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.91;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3117,330,0 chrVII 46545 . A G 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=4.078;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.263;QD=22.81;ReadPosRankSum=1.706;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3067,327,0 chrVII 46634 . A G 2784 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.00;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2817,288,0 chrVII 46890 . T C 3333.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=13.7056;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.51;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3333,357,0 chrVII 47026 . G A 4212.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.16;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4212,421,0 chrVII 47968 . A G 5385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=222;Dels=0.00;FS=8.028;HaplotypeScore=12.2441;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.639;QD=24.26;ReadPosRankSum=2.416;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:2,219:222:99:5385,588,0 chrVII 47998 . A G 5742.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=6.1802;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.34;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5742,619,0 chrVII 50800 . A G 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.439;QD=21.72;ReadPosRankSum=1.705;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2857,303,0 chrVII 51531 . T C 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.0113;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.440;QD=23.50;ReadPosRankSum=1.713;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4347,468,0 chrVII 52589 . G A 2467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.3408;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=1.246;QD=21.64;ReadPosRankSum=1.641;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2500,264,0 chrVII 52610 . A G 138.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.361;DP=107;Dels=0.00;FS=0.884;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-1.908;QD=1.29;ReadPosRankSum=-3.935;SB=-1.361e+02 GT:AD:DP:GQ:PL 1/1:85,22:107:21:171,21,0 chrVII 52682 . G A 3091 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=22.73;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3124,313,0 chrVII 52732 . T C 3561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=180;Dels=0.01;FS=0.000;HaplotypeScore=11.5732;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=0.068;QD=19.78;ReadPosRankSum=1.713;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3561,378,0 chrVII 52740 . T A 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.563;DP=191;Dels=0.00;FS=2.579;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-1.711;QD=17.30;ReadPosRankSum=2.921;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:3305,345,0 chrVII 52959 . T C 6834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=298;Dels=0.00;FS=8.387;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.145;QD=22.93;ReadPosRankSum=3.414;SB=-3.443e+03 GT:AD:DP:GQ:PL 1/1:4,291:298:99:6834,712,0 chrVII 53213 . T C 4656.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.02;FS=0.000;HaplotypeScore=89.3953;MLEAC=2;MLEAF=1.00;MQ=60.88;MQ0=0;QD=17.70;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,252:258:99:4656,496,0 chrVII 53407 . A G 4293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.056;DP=198;Dels=0.00;FS=8.948;HaplotypeScore=7.2251;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=2.338;QD=21.68;ReadPosRankSum=0.316;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4293,436,0 chrVII 53419 . T C 3971.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.58;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3971,426,0 chrVII 53455 . G A 3021 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.3344;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.42;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3054,321,0 chrVII 54324 . G C 4219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.388;DP=173;Dels=0.00;FS=3.817;HaplotypeScore=11.7775;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.469;QD=24.39;ReadPosRankSum=-0.942;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4219,430,0 chrVII 54455 . C G 4550.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.9260;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.20;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:4550,481,0 chrVII 54561 . A G 4330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=192;Dels=0.00;FS=3.291;HaplotypeScore=14.2401;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.217;QD=22.55;ReadPosRankSum=1.714;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4330,462,0 chrVII 54816 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.3661;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.73;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3484,369,0 chrVII 54821 . T G 3620.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.5850;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.15;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3620,387,0 chrVII 54879 . A G 4478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=211;Dels=0.00;FS=3.161;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.174;QD=21.22;ReadPosRankSum=1.664;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:1,204:211:99:4478,463,0 chrVII 54933 . G A 5745.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=14.9694;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.55;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5745,621,0 chrVII 55015 . G T 3680.01 SnpCluster AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=21.03;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3680,364,0 chrVII 55016 . C T 3462.01 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=20.25;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3462,363,0 chrVII 55023 . C T 3513.01 SnpCluster AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.0369;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=18.59;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3513,349,0 chrVII 55107 . G A 6892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=281;Dels=0.00;FS=3.437;HaplotypeScore=18.4023;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.486;QD=24.53;ReadPosRankSum=0.959;SB=-3.491e+03 GT:AD:DP:GQ:PL 1/1:1,277:281:99:6892,685,0 chrVII 55152 . C T 7974.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=13.1616;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.15;SB=-4.141e+03 GT:AD:DP:GQ:PL 1/1:0,316:317:99:7974,796,0 chrVII 55299 . G A 5613.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=17.7758;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.29;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5613,568,0 chrVII 55419 . T C 7548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.703;DP=312;Dels=0.00;FS=11.464;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.283;QD=24.19;ReadPosRankSum=3.738;SB=-3.889e+03 GT:AD:DP:GQ:PL 1/1:5,306:312:99:7548,787,0 chrVII 55455 . C A 6819.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.18;SB=-2.944e+03 GT:AD:DP:GQ:PL 1/1:0,321:322:99:6819,721,0 chrVII 55464 . G A 6309.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=20.35;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,307:310:99:6309,673,0 chrVII 55850 . G A 6031.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=16.7112;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.62;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,242:245:99:6031,604,0 chrVII 55912 . A G 3992.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.29;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:3992,415,0 chrVII 55935 . C G 3718.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.4015;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=18.32;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:3718,385,0 chrVII 56041 . C T 2896 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.6441;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.62;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2929,292,0 chrVII 56091 . C T 3160 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.50;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3193,319,0 chrVII 56095 . A T 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.825;QD=21.39;ReadPosRankSum=1.709;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3220,322,0 chrVII 56199 . C T 2123 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.84;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2156,213,0 chrVII 56448 . A C 5929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=240;Dels=0.00;FS=6.095;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.426;QD=24.70;ReadPosRankSum=1.717;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,236:240:99:5929,619,0 chrVII 60729 . T C 3107 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3140,333,0 chrVII 61936 . C T 2223 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.16;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2256,234,0 chrVII 62683 . G A 4233.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.1943;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.75;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4233,427,0 chrVII 66126 . T G 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=130;Dels=0.00;FS=6.110;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.093;QD=24.11;ReadPosRankSum=2.853;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:3167,336,0 chrVII 66339 . G A 3479.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.0737;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.85;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3479,349,0 chrVII 66605 . G A 3914.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.62;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3914,391,0 chrVII 66617 . A G 4042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=182;Dels=0.00;FS=10.476;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-1.271;QD=22.21;ReadPosRankSum=2.962;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:4042,412,0 chrVII 66622 . T C 3922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=178;Dels=0.00;FS=2.948;HaplotypeScore=4.2954;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=-0.160;QD=22.03;ReadPosRankSum=2.366;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3922,403,0 chrVII 66712 . G C 3605.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.53;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3605,378,0 chrVII 66921 . G A 3329.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.65;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3329,337,0 chrVII 67009 . G A 3813.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.48;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3813,382,0 chrVII 67253 . T C 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=3.840;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.255;QD=21.27;ReadPosRankSum=1.632;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2968,321,0 chrVII 67624 . A G 4654.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.2421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4654,510,0 chrVII 68009 . T A 4546.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.93;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4546,460,0 chrVII 68067 . A G 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=160;Dels=0.00;FS=3.536;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.294;QD=22.84;ReadPosRankSum=1.666;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3654,393,0 chrVII 68203 . T C 5875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.528;QD=22.68;ReadPosRankSum=1.705;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,258:259:99:5875,616,0 chrVII 68211 . G A 5982.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.24;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5982,601,0 chrVII 68385 . G A 7495.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=16.4505;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.90;SB=-3.288e+03 GT:AD:DP:GQ:PL 1/1:0,298:301:99:7495,754,0 chrVII 68542 . T C 5406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=225;Dels=0.00;FS=2.930;HaplotypeScore=19.1885;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.707;QD=24.03;ReadPosRankSum=2.428;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:5406,571,0 chrVII 69214 . A T 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1242;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=0.341;QD=25.18;ReadPosRankSum=1.682;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3450,357,0 chrVII 69249 . G T 2916 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.78;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2949,315,0 chrVII 69315 . T C 1866 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.51;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1899,201,0 chrVII 69424 . T C 489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.281;DP=46;Dels=0.00;FS=3.010;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.527;QD=10.63;ReadPosRankSum=1.657;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:54:522,54,0 chrVII 70474 . T C 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=177;Dels=0.00;FS=3.035;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-0.491;QD=24.51;ReadPosRankSum=1.712;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:1,172:177:99:4338,451,0 chrVII 70531 . A G 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=0.584;QD=21.11;ReadPosRankSum=1.639;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:3968,420,0 chrVII 70537 . T C 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=190;Dels=0.00;FS=7.177;HaplotypeScore=5.6683;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.149;QD=20.56;ReadPosRankSum=2.411;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:3907,414,0 chrVII 70633 . T A 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.003;QD=25.70;ReadPosRankSum=1.709;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3906,409,0 chrVII 70861 . T C 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=161;Dels=0.00;FS=4.260;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.325;QD=25.17;ReadPosRankSum=1.689;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:4053,430,0 chrVII 71410 . G A 4179.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.1354;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4179,421,0 chrVII 72738 . A G 3770.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.7570;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.82;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3770,394,0 chrVII 72788 . G A 3329.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3329,360,0 chrVII 72874 . C T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.88;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3571,361,0 chrVII 73077 . G A 4596.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.3889;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=25.39;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4596,481,0 chrVII 73286 . A G 6145.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=5.3702;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=23.91;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:6145,631,0 chrVII 73336 . G A 4923.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=1.9681;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=19.31;SB=-3.651e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:4923,487,0 chrVII 73362 . G T 4585.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=18.41;SB=-3.409e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:4585,466,0 chrVII 73438 . C T 7016.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=8.3147;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=24.36;SB=-3.465e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:7016,748,0 chrVII 73453 . A G 7250.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=10.6153;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=24.01;SB=-3.247e+03 GT:AD:DP:GQ:PL 1/1:0,301:302:99:7250,757,0 chrVII 73493 . C G 5055.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.98;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,226:230:99:5055,526,0 chrVII 73615 . A G 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.293;QD=20.80;ReadPosRankSum=2.943;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:3,155:159:99:3307,345,0 chrVII 73684 . A G 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.317;DP=101;Dels=0.00;FS=2.412;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=-1.506;QD=22.20;ReadPosRankSum=3.335;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:4,97:101:99:2275,237,0 chrVII 74133 . G A 735 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=21.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:78:768,78,0 chrVII 74141 . A T 860 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.34;MQ0=0;MQRankSum=-0.133;QD=22.05;ReadPosRankSum=1.644;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,38:39:90:893,90,0 chrVII 74173 . A T 717.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=7.063;DP=102;Dels=0.00;FS=274.067;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;MQRankSum=-1.473;QD=7.03;ReadPosRankSum=-7.944;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:67,35:102:12:750,12,0 chrVII 74365 . C T 3313.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=25.68;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3313,345,0 chrVII 74414 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.2481;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=24.35;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3150,336,0 chrVII 74942 . T G 8141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.670;DP=355;Dels=0.00;FS=4.813;HaplotypeScore=9.3866;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.501;QD=22.93;ReadPosRankSum=3.824;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:5,348:355:99:8141,862,0 chrVII 74964 . C T 7835.01 PASS AC=2;AF=1.00;AN=2;DP=356;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.01;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,355:356:99:7835,790,0 chrVII 74983 . A G 6098.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=12.1821;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=18.94;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,320:322:99:6098,684,0 chrVII 75064 . G T 7835.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=12.5834;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=25.19;SB=-3.770e+03 GT:AD:DP:GQ:PL 1/1:0,309:311:99:7835,796,0 chrVII 75209 . T C 8633.01 PASS AC=2;AF=1.00;AN=2;DP=358;Dels=0.00;FS=0.000;HaplotypeScore=12.6367;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=24.11;SB=-3.476e+03 GT:AD:DP:GQ:PL 1/1:0,356:358:99:8633,910,0 chrVII 75261 . G A 5470.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=21.97;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5470,556,0 chrVII 75286 . C G 4904.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;QD=19.01;SB=-3.247e+03 GT:AD:DP:GQ:PL 1/1:0,255:258:99:4904,517,0 chrVII 75292 . A G 4816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=265;Dels=0.00;FS=3.441;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;MQRankSum=0.072;QD=18.17;ReadPosRankSum=1.719;SB=-3.353e+03 GT:AD:DP:GQ:PL 1/1:1,264:265:99:4816,519,0 chrVII 75341 . T C 5014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=294;Dels=0.00;FS=2.878;HaplotypeScore=12.8084;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;MQRankSum=-0.416;QD=17.05;ReadPosRankSum=2.424;SB=-3.208e+03 GT:AD:DP:GQ:PL 1/1:2,290:294:99:5014,523,0 chrVII 75351 . A T 5014.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=4.8045;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=18.04;SB=-3.120e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:5014,526,0 chrVII 75358 . C G 4776.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=9.4922;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=17.12;SB=-3.095e+03 GT:AD:DP:GQ:PL 1/1:0,276:279:99:4776,505,0 chrVII 75428 . T C 6044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=271;Dels=0.00;FS=5.423;HaplotypeScore=17.1262;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.535;QD=22.30;ReadPosRankSum=2.952;SB=-2.933e+03 GT:AD:DP:GQ:PL 1/1:3,267:271:99:6044,628,0 chrVII 76021 . A T 7238.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=12.8417;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=25.67;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:0,282:282:99:7238,727,0 chrVII 76149 . G A 8258.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=16.7122;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.41;SB=-4.614e+03 GT:AD:DP:GQ:PL 1/1:0,323:325:99:8258,812,0 chrVII 76247 . A G 6104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.676;DP=278;Dels=0.00;FS=7.941;HaplotypeScore=16.8589;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.096;QD=21.96;ReadPosRankSum=3.766;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:5,273:278:99:6104,634,0 chrVII 76490 . C T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=24.00;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3840,405,0 chrVII 76512 . G A 3713.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=24.11;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3713,370,0 chrVII 76519 . G A 3483.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=23.38;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3483,349,0 chrVII 76600 . G A 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.414;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.8961;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.573;QD=23.76;ReadPosRankSum=-1.383;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2647,240,0 chrVII 76663 . G C 1927 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.5617;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=17.52;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1960,210,0 chrVII 76882 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=15.7506;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.749;QD=24.49;ReadPosRankSum=2.264;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3576,378,0 chrVII 76989 . T C 4241.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.56;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4241,442,0 chrVII 77025 . T C 4204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=191;Dels=0.01;FS=6.377;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-0.085;QD=22.01;ReadPosRankSum=2.423;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:2,185:189:99:4204,436,0 chrVII 77052 . C T 4628.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.25;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4628,478,0 chrVII 77580 . G A 5443.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.8399;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.87;SB=-2.783e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:5443,568,0 chrVII 77983 . T C 1973 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.78;MQ0=0;QD=23.77;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2006,210,0 chrVII 78029 . A G 2937 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.54;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2970,306,0 chrVII 78636 . G A 4599.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.13;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4599,463,0 chrVII 78859 . A G 1318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.131;QD=19.97;ReadPosRankSum=2.375;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1351,141,0 chrVII 78965 . C T 1750 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;QD=25.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1783,177,0 chrVII 78970 . T C 1492 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=23.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1525,162,0 chrVII 78986 . A C 930 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=0;MQRankSum=-1.732;QD=21.14;ReadPosRankSum=1.654;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,43:44:99:963,105,0 chrVII 79107 . T C 2046 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2079,219,0 chrVII 79268 . A G 2275 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.30;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2308,246,0 chrVII 79504 . T G 5494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=217;Dels=0.00;FS=2.577;HaplotypeScore=8.9493;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-2.047;QD=25.32;ReadPosRankSum=2.912;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:3,213:217:99:5494,589,0 chrVII 79586 . C A 4909.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.44;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4909,517,0 chrVII 79663 . G A 5260.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.67;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5260,561,0 chrVII 80122 . T C 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=139;Dels=0.00;FS=6.117;HaplotypeScore=11.7681;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.654;QD=22.74;ReadPosRankSum=2.919;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:3,134:139:99:3194,331,0 chrVII 80305 . A G 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=2.951;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.862;QD=25.08;ReadPosRankSum=2.414;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3461,361,0 chrVII 80603 . A G 36.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=19;Dels=0.00;FS=17.623;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=2.824;QD=1.95;ReadPosRankSum=3.101;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:5,14:19:9:69,9,0 chrVII 80643 . T C 53.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=6.3666;MLEAC=2;MLEAF=1.00;MQ=35.01;MQ0=0;MQRankSum=-2.735;QD=1.26;ReadPosRankSum=2.833;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:3,40:43:9:86,9,0 chrVII 80653 . G A 381 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.03;FS=0.000;HaplotypeScore=12.1537;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;QD=6.46;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,55:57:42:414,42,0 chrVII 80674 . T C 1046 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;MQRankSum=-0.550;QD=12.31;ReadPosRankSum=1.691;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1079,114,0 chrVII 80875 . C A 3904.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.7133;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=25.68;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3904,394,0 chrVII 80909 . A G 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0960;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=1.067;QD=23.74;ReadPosRankSum=1.713;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4226,448,0 chrVII 80976 . T A 3946.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.06;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3946,412,0 chrVII 81268 . G A 5523.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=19.1677;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.40;SB=-3.208e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5523,550,0 chrVII 81306 . T A 5657.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=13.2812;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.45;SB=-3.141e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5657,580,0 chrVII 81381 . G A 5663.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=16.3151;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.69;SB=-3.224e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5663,577,0 chrVII 82858 . A G 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.720;DP=171;Dels=0.00;FS=5.995;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.923;QD=22.50;ReadPosRankSum=2.899;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:3,166:171:99:3847,408,0 chrVII 84203 . T C 3829.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.2947;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=22.66;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3829,397,0 chrVII 84308 . T C 2976 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.1515;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.57;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3009,321,0 chrVII 84678 . A T 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.214;QD=21.82;ReadPosRankSum=1.699;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2324,228,0 chrVII 84714 . T A 1443 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0269;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.20;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1476,147,0 chrVII 84785 . A G 820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=41;Dels=0.00;FS=8.016;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.730;QD=20.00;ReadPosRankSum=1.641;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:1,37:41:90:853,90,0 chrVII 85120 . A G 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=195;Dels=0.00;FS=3.032;HaplotypeScore=13.5970;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.297;QD=23.49;ReadPosRankSum=2.424;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4580,484,0 chrVII 85190 . A C 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=3.043;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.038;QD=22.50;ReadPosRankSum=1.706;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3093,330,0 chrVII 85238 . G A 4411.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.9391;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.26;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4411,445,0 chrVII 85271 . C T 5328.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5328,529,0 chrVII 85337 . C T 4129.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=18.4850;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.20;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4129,433,0 chrVII 85539 . C T 4119.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.67;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4119,412,0 chrVII 85628 . C T 6601.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=22.0926;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=26.19;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:6601,667,0 chrVII 86297 . C T 4768.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=26.64;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4768,481,0 chrVII 86321 . T C 4171.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.98;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4171,433,0 chrVII 86411 . A C 4664.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.55;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4664,496,0 chrVII 86533 . C T 4573.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.33;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4573,483,0 chrVII 86645 . C T 2812 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.1381;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.24;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2845,288,0 chrVII 86720 . G A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.45;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3912,406,0 chrVII 86891 . T C 2334 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.02;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2367,240,0 chrVII 87038 . G T 2740 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.24;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2773,282,0 chrVII 87051 . C A 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.764;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.9046;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.586;QD=19.91;ReadPosRankSum=0.815;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2761,282,0 chrVII 87769 . A G 1859 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.40;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1892,195,0 chrVII 87882 . C T 1683 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=58.5220;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=18.49;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1716,171,0 chrVII 88301 . T C 5851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=256;Dels=0.00;FS=11.315;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.298;QD=22.86;ReadPosRankSum=2.910;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:3,253:256:99:5851,610,0 chrVII 88664 . C T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.37;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3288,340,0 chrVII 88681 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.236;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.307;QD=22.81;ReadPosRankSum=1.710;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3626,373,0 chrVII 88718 . T C 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=3.157;HaplotypeScore=10.8614;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-1.181;QD=22.07;ReadPosRankSum=1.686;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3333,354,0 chrVII 89311 . A G 2469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.359;QD=23.07;ReadPosRankSum=1.699;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2502,258,0 chrVII 89339 . G A 1860 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.58;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1893,189,0 chrVII 90010 . A G 1682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=9.098;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.412;QD=25.88;ReadPosRankSum=1.679;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1715,177,0 chrVII 90444 . A G 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=168;Dels=0.00;FS=2.583;HaplotypeScore=8.2617;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.934;QD=22.82;ReadPosRankSum=2.839;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3834,405,0 chrVII 91031 . C T 5448.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.34;SB=-2.922e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5448,544,0 chrVII 91652 . G T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.62;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3665,373,0 chrVII 91958 . T C 8658.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=384;Dels=0.00;FS=0.000;HaplotypeScore=11.3885;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.973;QD=22.55;ReadPosRankSum=2.392;SB=-3.381e+03 GT:AD:DP:GQ:PL 1/1:2,380:384:99:8658,934,0 chrVII 91977 . G A 8354.01 PASS AC=2;AF=1.00;AN=2;DP=355;Dels=0.00;FS=0.000;HaplotypeScore=17.5343;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.53;SB=-3.885e+03 GT:AD:DP:GQ:PL 1/1:0,354:355:99:8354,836,0 chrVII 92135 . C T 9825.01 filter AC=2;AF=1.00;AN=2;DP=407;Dels=0.00;FS=0.000;HaplotypeScore=23.1436;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.14;SB=-4.651e+03 GT:AD:DP:GQ:PL 1/1:0,406:407:99:9825,995,0 chrVII 92390 . A T 3814.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.01;FS=0.000;HaplotypeScore=20.0394;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;QD=23.26;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3814,385,0 chrVII 92485 . T C 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.179;DP=144;Dels=0.00;FS=4.921;HaplotypeScore=14.1161;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.103;QD=21.87;ReadPosRankSum=3.313;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:4,140:144:99:3183,339,0 chrVII 92820 . G A 6804.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=16.8171;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.39;SB=-3.191e+03 GT:AD:DP:GQ:PL 1/1:0,277:279:99:6804,715,0 chrVII 92892 . T C 6446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=266;Dels=0.00;FS=2.975;HaplotypeScore=20.3941;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.449;QD=24.23;ReadPosRankSum=2.431;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:2,263:266:99:6446,694,0 chrVII 93397 . G A 4875.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4875,514,0 chrVII 94685 . T A 2074 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.54;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2107,216,0 chrVII 95130 . G T 2916 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.0744;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.14;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2949,295,0 chrVII 95512 . T C 1987 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.8425;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.48;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2020,216,0 chrVII 95706 . T C 2222 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2255,240,0 chrVII 95788 . T C 3821.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.34;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3821,397,0 chrVII 96337 . T C 6485.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=13.0413;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-4.114e+03 GT:AD:DP:GQ:PL 1/1:0,303:304:99:6485,682,0 chrVII 96869 . G A 4940.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.19;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4940,517,0 chrVII 97616 . T C 6806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=15.9682;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.372;QD=23.55;ReadPosRankSum=1.708;SB=-3.363e+03 GT:AD:DP:GQ:PL 1/1:1,288:289:99:6806,730,0 chrVII 97836 . G A 6699.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=19.2550;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.84;SB=-3.518e+03 GT:AD:DP:GQ:PL 1/1:0,278:281:99:6699,676,0 chrVII 97982 . C T 6279.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=16.2141;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.15;SB=-3.445e+03 GT:AD:DP:GQ:PL 1/1:0,255:260:99:6279,649,0 chrVII 98012 . T A 6026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.242;DP=255;Dels=0.00;FS=9.131;HaplotypeScore=12.2478;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=0.823;QD=23.63;ReadPosRankSum=3.311;SB=-3.209e+03 GT:AD:DP:GQ:PL 1/1:4,251:255:99:6026,648,0 chrVII 98090 . C A 6174.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=21.7275;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.90;SB=-3.552e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:6174,607,0 chrVII 98124 . G T 6889.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=22.6224;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=25.80;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6889,718,0 chrVII 98211 . A C 4986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.510;QD=20.69;ReadPosRankSum=1.675;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:4986,537,0 chrVII 98228 . G T 4681.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.71;SB=-3.033e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4681,481,0 chrVII 98329 . G A 5111.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=19.66;SB=-3.055e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:5111,508,0 chrVII 98330 . C T 4853.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=18.67;SB=-2.938e+03 GT:AD:DP:GQ:PL 1/1:0,257:260:99:4853,508,0 chrVII 98387 . T G 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.539;DP=236;Dels=0.00;FS=4.697;HaplotypeScore=17.5502;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=0.899;QD=18.53;ReadPosRankSum=1.717;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:1,232:236:99:4374,463,0 chrVII 98456 . G A 4351.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=23.14;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4351,448,0 chrVII 98492 . C T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=24.01;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3866,400,0 chrVII 98507 . A G 3622.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=22.50;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3622,390,0 chrVII 98592 . A C 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.329;DP=174;Dels=0.00;FS=8.961;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;MQRankSum=-1.843;QD=18.46;ReadPosRankSum=3.359;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:4,170:174:99:3245,334,0 chrVII 98608 . G C 2727 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=126.6911;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=17.04;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:2760,297,0 chrVII 98668 . A C 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=130;Dels=0.00;FS=5.891;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;MQRankSum=-0.310;QD=16.94;ReadPosRankSum=2.945;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:3,124:130:99:2235,237,0 chrVII 98671 . C T 2261 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.6023;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=17.39;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2294,240,0 chrVII 98745 . C T 2869 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=22.07;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2902,295,0 chrVII 98756 . A C 2905 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=21.84;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2938,312,0 chrVII 98879 . G A 3406.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=25.80;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3406,343,0 chrVII 98918 . C T 4061.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.4496;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=25.54;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4061,406,0 chrVII 98947 . G A 4124.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=25.94;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4124,433,0 chrVII 99292 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.311;DP=176;Dels=0.00;FS=9.096;HaplotypeScore=12.3419;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=0.908;QD=21.29;ReadPosRankSum=3.340;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:4,172:176:99:3747,385,0 chrVII 99303 . T A 3663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=166;Dels=0.00;FS=6.052;HaplotypeScore=10.4178;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-0.376;QD=22.07;ReadPosRankSum=2.958;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3663,367,0 chrVII 99361 . G A 4061.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.37;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4061,429,0 chrVII 99508 . A G 3123 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.48;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3156,325,0 chrVII 99853 . T C 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=154;Dels=0.00;FS=3.813;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.630;QD=23.16;ReadPosRankSum=1.710;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3567,378,0 chrVII 100110 . T C 2817 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2850,294,0 chrVII 100285 . C G 2378 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2411,255,0 chrVII 100351 . T A 2692 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.6680;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.04;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2725,276,0 chrVII 100668 . A G 3423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=3.611;HaplotypeScore=5.1067;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.119;QD=23.29;ReadPosRankSum=1.709;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3423,360,0 chrVII 100684 . A G 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-1.325;QD=23.04;ReadPosRankSum=1.630;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3167,336,0 chrVII 100717 . A G 3554.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.54;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3554,370,0 chrVII 100756 . T C 3671.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0517;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.68;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3671,390,0 chrVII 100825 . C T 4189.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.93;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4189,436,0 chrVII 100858 . C T 4080.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.6962;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.88;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4080,427,0 chrVII 100904 . T C 3489.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.1365;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.57;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3489,372,0 chrVII 101050 . A G 2523 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.7011;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=21.56;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2556,273,0 chrVII 101053 . T C 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.672;DP=127;Dels=0.00;FS=11.180;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=1.232;QD=19.67;ReadPosRankSum=2.064;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:3,123:127:99:2531,267,0 chrVII 101815 . T C 4880.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.67;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4880,505,0 chrVII 101923 . T C 4895.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.9965;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.09;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4895,514,0 chrVII 102109 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3499,369,0 chrVII 102220 . G T 2362 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=25.96;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2395,237,0 chrVII 102510 . G A 707 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=8.1588;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=14.43;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:81:740,81,0 chrVII 102955 . C G 4294.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.9207;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.21;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,181:185:99:4294,457,0 chrVII 103278 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3393,340,0 chrVII 103776 . A G 4819.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.0011;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=25.36;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4819,499,0 chrVII 103842 . C T 2594 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.26;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2627,261,0 chrVII 103858 . T C 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=3.823;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-0.634;QD=19.87;ReadPosRankSum=1.648;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2517,261,0 chrVII 104051 . G T 871.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.608;DP=151;Dels=0.00;FS=244.897;HaplotypeScore=14.5496;MLEAC=1;MLEAF=0.500;MQ=53.39;MQ0=0;MQRankSum=-2.834;QD=5.77;ReadPosRankSum=-8.712;SB=1.11 GT:AD:DP:GQ:PL 0/1:81,70:151:99:901,0,866 chrVII 104154 . A G 3632.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9377;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.38;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3632,393,0 chrVII 104179 . T C 4063.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=24.48;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4063,424,0 chrVII 104250 . A G 3417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.4886;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=0.221;QD=22.63;ReadPosRankSum=1.709;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3417,360,0 chrVII 104260 . T C 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.357;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.7955;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;MQRankSum=-1.055;QD=20.36;ReadPosRankSum=3.301;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:4,152:157:99:3229,339,0 chrVII 104271 . A G 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;MQRankSum=-0.297;QD=19.49;ReadPosRankSum=1.707;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2761,297,0 chrVII 104466 . C T 2750 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=22.73;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2783,285,0 chrVII 104478 . T C 2855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=123;Dels=0.00;FS=6.040;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=0.083;QD=23.21;ReadPosRankSum=2.909;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:3,119:123:99:2888,300,0 chrVII 104541 . T C 3704.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=24.37;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3704,391,0 chrVII 104760 . G A 4478.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.1330;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=25.02;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4478,445,0 chrVII 104775 . G A 4579.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=24.62;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4579,460,0 chrVII 104960 . T C 3909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.260;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.366;QD=24.13;ReadPosRankSum=1.711;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3909,412,0 chrVII 105018 . G A 4472.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.8147;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.71;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4472,445,0 chrVII 105105 . T C 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.608;QD=24.66;ReadPosRankSum=1.707;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3452,369,0 chrVII 105177 . G A 4173.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.3033;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.60;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4173,415,0 chrVII 105270 . T C 3595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.7721;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.425;QD=22.75;ReadPosRankSum=1.688;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3595,373,0 chrVII 105393 . C T 3898.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.07;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,163:169:99:3898,403,0 chrVII 105414 . A G 4294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=3.485;HaplotypeScore=8.2438;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.836;QD=24.68;ReadPosRankSum=1.692;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4294,439,0 chrVII 105492 . C T 4474.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.8483;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.28;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4474,454,0 chrVII 105549 . T C 4440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.734;QD=24.80;ReadPosRankSum=1.713;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:4440,463,0 chrVII 105594 . T C 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=184;Dels=0.00;FS=3.229;HaplotypeScore=8.9636;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.218;QD=22.60;ReadPosRankSum=1.675;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4158,439,0 chrVII 106068 . C T 4067.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.93;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:4067,409,0 chrVII 106214 . A G 4477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=3.580;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.454;QD=23.69;ReadPosRankSum=1.714;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4477,463,0 chrVII 106314 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.04;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3163,319,0 chrVII 106438 . A G 4464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.1381;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-1.218;QD=24.26;ReadPosRankSum=1.713;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:4464,469,0 chrVII 106548 . G A 3051 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=26.53;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3084,313,0 chrVII 106692 . C T 3693.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.98;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3693,370,0 chrVII 106704 . T C 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=145;Dels=0.00;FS=3.454;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=0.746;QD=20.49;ReadPosRankSum=1.708;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3004,321,0 chrVII 106751 . C T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.87;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3423,343,0 chrVII 106941 . T G 4481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=198;Dels=0.00;FS=2.854;HaplotypeScore=7.1832;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=1.410;QD=22.63;ReadPosRankSum=2.399;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:4481,475,0 chrVII 107169 . C T 4622.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.54;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4622,466,0 chrVII 107461 . A G 3696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.189;QD=22.40;ReadPosRankSum=2.872;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3696,390,0 chrVII 107657 . A G 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=3.178;HaplotypeScore=9.2061;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.680;QD=22.50;ReadPosRankSum=1.644;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1833,195,0 chrVII 107722 . G A 1967 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.6654;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.70;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2000,201,0 chrVII 107757 . T G 2039 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=23.71;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2072,225,0 chrVII 107795 . A C 1892 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=21.02;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1925,213,0 chrVII 107810 . C T 2218 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=22.40;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2251,225,0 chrVII 107814 . C T 2079 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=20.18;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2112,222,0 chrVII 108005 . A G 1519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=7.4843;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=0.408;QD=22.01;ReadPosRankSum=1.681;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1552,165,0 chrVII 108238 . G C 2038 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=25.16;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:2071,219,0 chrVII 108343 . A G 3040 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=24.92;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3073,318,0 chrVII 108349 . T C 2855 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=22.48;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2888,303,0 chrVII 108369 . A C 2258 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=18.82;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2291,240,0 chrVII 108374 . A C 2274 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=19.11;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2307,240,0 chrVII 108464 . G A 4573.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.55;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4573,463,0 chrVII 108556 . G A 5149.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.2846;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=26.14;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5149,541,0 chrVII 108797 . G A 5238.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.38;SB=-2.922e+03 GT:AD:DP:GQ:PL 1/1:0,220:224:99:5238,550,0 chrVII 109424 . T G 6544.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.88;SB=-2.945e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:6544,679,0 chrVII 109776 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.61;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:3266,348,0 chrVII 109784 . G A 2817 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.34;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2850,306,0 chrVII 109841 . C T 2299 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.09;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2332,234,0 chrVII 109972 . T C 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=4.559;HaplotypeScore=9.4414;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.544;QD=21.87;ReadPosRankSum=1.683;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3138,339,0 chrVII 110008 . T A 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=130;Dels=0.00;FS=3.815;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-1.332;QD=23.55;ReadPosRankSum=1.679;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3095,310,0 chrVII 110035 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=23.38;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2979,298,0 chrVII 110083 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.76;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3400,343,0 chrVII 110518 . A T 5176.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=26.01;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5176,520,0 chrVII 110740 . A G 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.171;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=-0.774;QD=20.13;ReadPosRankSum=2.399;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1986,213,0 chrVII 111592 . G T 56.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=-0.274;QD=3.00;ReadPosRankSum=-0.456;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,18:19:9:89,9,0 chrVII 111603 . A T 56.97 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=2.85;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:9:89,9,0 chrVII 111607 . A G 56.97 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=2.48;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:9:89,9,0 chrVII 111609 . A G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=2.09;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:9:80,9,0 chrVII 111614 . G A 78.51 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;QD=2.12;SB=-4.352e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:12:111,12,0 chrVII 111618 . T G 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.54;MQ0=0;QD=1.71;SB=-4.352e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:12:106,12,0 chrVII 111632 . G A 659 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=38.17;MQ0=0;QD=10.98;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:69:692,69,0 chrVII 111678 . C T 2068 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=20.48;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2101,216,0 chrVII 111703 . A T 2771 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=24.74;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2804,285,0 chrVII 111770 . G C 2903 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=24.19;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2936,306,0 chrVII 111789 . T C 3283.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=25.06;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3283,339,0 chrVII 111809 . A G 3017 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=22.35;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3050,330,0 chrVII 111921 . G C 3616.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=24.11;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3616,387,0 chrVII 111953 . T C 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=144;Dels=0.00;FS=8.950;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=-0.130;QD=22.87;ReadPosRankSum=2.363;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:2,140:144:99:3293,348,0 chrVII 111969 . A G 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;MQRankSum=0.406;QD=21.50;ReadPosRankSum=1.705;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2806,294,0 chrVII 111972 . A G 2638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=0.087;QD=20.77;ReadPosRankSum=2.392;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2671,282,0 chrVII 112033 . G T 3085 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.55;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3118,313,0 chrVII 112158 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.64;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2773,282,0 chrVII 112175 . C A 2402 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=21.07;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2435,249,0 chrVII 112250 . C T 1191 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.27;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1224,129,0 chrVII 112532 . C G 3109 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=27.03;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:3142,324,0 chrVII 112754 . A G 4519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=196;Dels=0.00;FS=2.960;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.515;QD=23.06;ReadPosRankSum=2.424;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:2,191:196:99:4519,480,0 chrVII 112793 . G A 5185.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=25.17;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5185,526,0 chrVII 112826 . T A 4911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.9104;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.106;QD=25.06;ReadPosRankSum=1.661;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4911,520,0 chrVII 112862 . T C 4538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.4535;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.985;QD=22.58;ReadPosRankSum=1.325;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:4538,457,0 chrVII 112949 . A G 2828.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.604;DP=413;Dels=0.00;FS=8.230;HaplotypeScore=24.9777;MLEAC=1;MLEAF=0.500;MQ=39.66;MQ0=0;MQRankSum=-0.239;QD=6.85;ReadPosRankSum=9.874;SB=-6.440e+02 GT:AD:DP:GQ:PL 0/1:206,206:413:99:2858,0,368 chrVII 112955 . A G 2326.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.429;DP=417;Dels=0.00;FS=23.075;HaplotypeScore=22.7464;MLEAC=1;MLEAF=0.500;MQ=39.99;MQ0=0;MQRankSum=-1.951;QD=5.58;ReadPosRankSum=3.223;SB=-5.120e+02 GT:AD:DP:GQ:PL 0/1:228,187:417:99:2356,0,868 chrVII 112958 . A G 2069.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.253;DP=419;Dels=0.00;FS=25.892;HaplotypeScore=106.9331;MLEAC=1;MLEAF=0.500;MQ=40.11;MQ0=0;MQRankSum=-5.141;QD=4.94;ReadPosRankSum=2.581;SB=-4.820e+02 GT:AD:DP:GQ:PL 0/1:239,180:419:99:2099,0,1006 chrVII 112988 . T A 861.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;DP=404;Dels=0.00;FS=13.804;HaplotypeScore=24.2150;MLEAC=1;MLEAF=0.500;MQ=44.13;MQ0=0;MQRankSum=-8.343;QD=2.13;ReadPosRankSum=-13.369;SB=-2.470e+02 GT:AD:DP:GQ:PL 0/1:310,94:404:99:891,0,2416 chrVII 112994 . G A 2674.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.960;DP=380;Dels=0.00;FS=20.838;HaplotypeScore=12.9432;MLEAC=1;MLEAF=0.500;MQ=45.40;MQ0=0;MQRankSum=6.059;QD=7.04;ReadPosRankSum=14.490;SB=-2.730e+03 GT:AD:DP:GQ:PL 0/1:93,286:379:99:2704,0,777 chrVII 113123 . A G 7969.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=401;Dels=0.00;FS=5.255;HaplotypeScore=16.7183;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;MQRankSum=-0.410;QD=19.87;ReadPosRankSum=2.947;SB=-4.051e+03 GT:AD:DP:GQ:PL 1/1:3,396:401:99:7969,841,0 chrVII 113471 . G A 6168.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-3.336e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:6168,628,0 chrVII 113653 . T C 4320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.147;DP=196;Dels=0.00;FS=14.190;HaplotypeScore=22.6568;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.840;QD=22.04;ReadPosRankSum=3.308;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:4,191:196:99:4320,457,0 chrVII 113828 . A C 4113.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4113,436,0 chrVII 114332 . G A 3632.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.22;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3632,370,0 chrVII 114793 . C A 3006 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=22.27;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,131:135:99:3039,324,0 chrVII 114971 . C A 2167 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.30;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2200,219,0 chrVII 115038 . G T 2856 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;QD=19.70;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2889,309,0 chrVII 115044 . G C 2740 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.09;MQ0=0;QD=17.79;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2773,309,0 chrVII 115059 . T A 2636 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=0;QD=17.23;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2669,288,0 chrVII 115063 . G A 2619 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=32.64;MQ0=0;QD=18.44;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2652,288,0 chrVII 115065 . G A 2658 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=33.43;MQ0=0;QD=18.33;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2691,288,0 chrVII 115074 . G T 2631 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.3550;MLEAC=2;MLEAF=1.00;MQ=37.02;MQ0=0;QD=16.97;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2664,294,0 chrVII 115232 . A G 2804 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=25.04;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2837,297,0 chrVII 115250 . T C 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=-1.673;QD=24.21;ReadPosRankSum=1.703;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2890,303,0 chrVII 115467 . C T 3047 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.44;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3080,312,0 chrVII 115589 . C T 1776 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.87;MQ0=0;QD=19.30;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1809,180,0 chrVII 115611 . T C 1758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=83.1765;MLEAC=2;MLEAF=1.00;MQ=41.80;MQ0=0;MQRankSum=-0.791;QD=17.94;ReadPosRankSum=1.771;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1791,189,0 chrVII 115633 . G A 1993 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=17.48;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2026,204,0 chrVII 115872 . C A 3493.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=24.43;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3493,369,0 chrVII 115965 . T C 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.433;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.776;QD=22.74;ReadPosRankSum=1.702;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2693,282,0 chrVII 116078 . A G 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=165;Dels=0.00;FS=7.253;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.364;QD=22.58;ReadPosRankSum=2.419;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3726,388,0 chrVII 116382 . T C 4867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=211;Dels=0.00;FS=6.211;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.183;QD=23.07;ReadPosRankSum=2.426;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:2,206:211:99:4867,520,0 chrVII 116400 . A G 5047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.1967;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.305;QD=23.26;ReadPosRankSum=1.716;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:5047,538,0 chrVII 116454 . C T 5006.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=20.6937;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.75;SB=-2.836e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5006,502,0 chrVII 116907 . C T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.6684;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3798,379,0 chrVII 117360 . T C 5110.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.9442;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.57;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,204:208:99:5110,547,0 chrVII 117574 . G A 2453 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.8863;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=25.29;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2486,252,0 chrVII 117609 . A C 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=0.680;QD=22.86;ReadPosRankSum=1.688;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1839,195,0 chrVII 117630 . A G 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.0324;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-1.453;QD=21.74;ReadPosRankSum=1.692;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1946,204,0 chrVII 117810 . C T 1876 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=23.16;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1909,189,0 chrVII 117824 . A T 2107 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=23.41;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2140,213,0 chrVII 117825 . A G 1905 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.17;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1938,210,0 chrVII 117896 . G A 2393 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.2453;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.95;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2426,246,0 chrVII 118133 . C T 5787.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.0135;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=24.63;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5787,586,0 chrVII 118274 . C T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=20.74;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4147,415,0 chrVII 118535 . C T 5541.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.4029;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=26.01;SB=-2.762e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5541,559,0 chrVII 119177 . G A 3663.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3663,367,0 chrVII 119852 . C T 6717.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=22.9630;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.79;SB=-3.631e+03 GT:AD:DP:GQ:PL 1/1:0,268:271:99:6717,670,0 chrVII 119894 . G A 7181.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=12.1442;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.65;SB=-3.404e+03 GT:AD:DP:GQ:PL 1/1:0,278:280:99:7181,727,0 chrVII 120263 . T G 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=194;Dels=0.00;FS=8.130;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.584;QD=18.09;ReadPosRankSum=2.399;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:3509,381,0 chrVII 120933 . G A 4140.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.93;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4140,409,0 chrVII 121176 . A G 2718 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.03;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2751,300,0 chrVII 121571 . T C 5099.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.5925;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=24.51;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5099,538,0 chrVII 121697 . C T 4320.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=25.12;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4320,427,0 chrVII 121769 . G T 3713.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=22.37;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3713,370,0 chrVII 121774 . C T 3375.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.5544;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=20.09;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3375,357,0 chrVII 121840 . G A 3506.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6011;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.22;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3506,349,0 chrVII 121902 . A G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=24.99;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3349,354,0 chrVII 121931 . G A 2159 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.76;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2192,216,0 chrVII 121932 . T C 2033 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=19.93;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2066,219,0 chrVII 122047 . G A 4509.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=25.62;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4509,454,0 chrVII 122120 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=25.88;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3598,373,0 chrVII 122226 . T A 2205 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;QD=19.69;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2238,234,0 chrVII 122234 . G C 2157 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=19.09;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2190,243,0 chrVII 122235 . T A 2210 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=19.39;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2243,237,0 chrVII 122391 . C A 2211 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.49;MQ0=0;QD=23.77;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2244,231,0 chrVII 122394 . A G 2033 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=0;QD=22.10;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2066,225,0 chrVII 122405 . C A 2209 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.87;MQ0=0;QD=22.54;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2242,231,0 chrVII 122445 . T C 2002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=110;Dels=0.00;FS=4.652;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;MQRankSum=-0.866;QD=18.20;ReadPosRankSum=1.668;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2035,213,0 chrVII 122466 . T A 1950 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=20.97;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1983,198,0 chrVII 122499 . T A 1750 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=18.62;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1783,180,0 chrVII 122622 . G A 3199 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=27.82;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3232,316,0 chrVII 122674 . A T 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.109;DP=130;Dels=0.00;FS=10.537;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=2.298;QD=24.25;ReadPosRankSum=2.260;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3185,322,0 chrVII 122793 . A G 5042.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.8980;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.02;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5042,541,0 chrVII 123330 . G C 4614.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.91;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4614,493,0 chrVII 123533 . C T 5533.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.3194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5533,565,0 chrVII 123568 . T A 5398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=19.1011;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.326;QD=25.95;ReadPosRankSum=1.682;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:5398,538,0 chrVII 123716 . G T 5411.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.7994;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-2.932e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5411,585,0 chrVII 123812 . C T 7330.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=18.6264;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.52;SB=-4.012e+03 GT:AD:DP:GQ:PL 1/1:0,298:299:99:7330,736,0 chrVII 124158 . G A 8521.01 PASS AC=2;AF=1.00;AN=2;DP=358;Dels=0.00;FS=0.000;HaplotypeScore=19.1686;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.80;SB=-3.519e+03 GT:AD:DP:GQ:PL 1/1:0,355:358:99:8521,851,0 chrVII 124205 . C T 6334.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=20.6329;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.40;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,296:296:99:6334,646,0 chrVII 124322 . C T 4432.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.20;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4432,445,0 chrVII 124460 . A G 2103 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.24;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2136,222,0 chrVII 124525 . G A 3007 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.44;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3040,309,0 chrVII 124541 . T C 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.363;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-0.086;QD=20.74;ReadPosRankSum=1.708;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2978,318,0 chrVII 124671 . A G 4455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.01;FS=6.021;HaplotypeScore=15.1094;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.602;QD=23.82;ReadPosRankSum=1.713;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4455,480,0 chrVII 124719 . A G 4279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=179;Dels=0.00;FS=5.759;HaplotypeScore=11.7663;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.656;QD=23.91;ReadPosRankSum=1.693;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:4279,465,0 chrVII 124761 . A G 3684.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.47;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3684,379,0 chrVII 124850 . T C 4191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=188;Dels=0.00;FS=9.089;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.177;QD=22.29;ReadPosRankSum=2.384;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:4191,445,0 chrVII 124916 . A G 4235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.9563;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=0.577;QD=22.06;ReadPosRankSum=1.714;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4235,445,0 chrVII 124931 . T C 3816.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=20.74;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:3816,400,0 chrVII 125048 . C T 3966.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.3374;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.48;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3966,400,0 chrVII 125090 . T C 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=161;Dels=0.00;FS=5.408;HaplotypeScore=6.5181;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.189;QD=23.39;ReadPosRankSum=2.931;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:3,157:161:99:3766,388,0 chrVII 125128 . G A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=19.31;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4035,403,0 chrVII 125147 . T C 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;MQRankSum=-0.097;QD=16.15;ReadPosRankSum=2.398;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:3134,330,0 chrVII 125174 . G T 2813 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=14.06;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:2846,294,0 chrVII 125177 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;QD=15.03;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:2933,289,0 chrVII 125195 . T C 2462 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=12.82;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:2495,258,0 chrVII 125279 . G A 4861.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.68;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4861,508,0 chrVII 125333 . A G 5051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.520;QD=22.96;ReadPosRankSum=1.716;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5051,532,0 chrVII 125498 . C T 3621.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.57;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3621,381,0 chrVII 125513 . A G 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=162;Dels=0.00;FS=5.792;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-0.006;QD=19.30;ReadPosRankSum=2.944;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3159,330,0 chrVII 125604 . G A 3871.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.1895;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=24.81;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3871,388,0 chrVII 125655 . G T 2252 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.25;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2285,240,0 chrVII 125658 . T C 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=120;Dels=0.00;FS=3.569;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.418;QD=18.28;ReadPosRankSum=1.702;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,116:120:99:2227,228,0 chrVII 125786 . A G 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.8171;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-1.186;QD=24.65;ReadPosRankSum=1.685;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3599,375,0 chrVII 125810 . C T 3484.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.6469;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=23.54;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3484,363,0 chrVII 126093 . T C 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.835;DP=121;Dels=0.00;FS=6.507;HaplotypeScore=5.1447;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.297;QD=20.12;ReadPosRankSum=2.183;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2467,237,0 chrVII 126106 . A G 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-1.229;QD=20.12;ReadPosRankSum=1.703;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2407,249,0 chrVII 126149 . G A 2427 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.57;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2460,252,0 chrVII 126167 . A T 2383 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.37;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2416,240,0 chrVII 126264 . G A 2827 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.3033;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.09;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2860,300,0 chrVII 126362 . C T 3005 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.0433;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.12;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3038,312,0 chrVII 126466 . A G 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=3.446;HaplotypeScore=11.5117;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.666;QD=24.60;ReadPosRankSum=1.688;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3887,406,0 chrVII 126593 . C A 4654.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.0777;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.76;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4654,495,0 chrVII 126626 . C T 5097.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.9821;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=25.23;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:5097,529,0 chrVII 126809 . T C 4751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=231;Dels=0.00;FS=3.821;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.234;QD=20.57;ReadPosRankSum=1.702;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:1,228:231:99:4751,496,0 chrVII 126818 . T C 4531.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.87;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4531,483,0 chrVII 126887 . A G 4681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=207;Dels=0.00;FS=3.271;HaplotypeScore=15.8999;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.312;QD=22.61;ReadPosRankSum=1.715;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4681,484,0 chrVII 126965 . A G 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.173;QD=22.76;ReadPosRankSum=1.667;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3642,393,0 chrVII 127046 . A G 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=162;Dels=0.00;FS=2.908;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.099;QD=20.25;ReadPosRankSum=2.419;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3281,345,0 chrVII 127208 . T C 5659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.055;DP=228;Dels=0.00;FS=4.675;HaplotypeScore=18.9634;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.207;QD=24.82;ReadPosRankSum=4.093;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:6,222:228:99:5659,601,0 chrVII 127350 . G T 9358.01 PASS AC=2;AF=1.00;AN=2;DP=356;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.29;SB=-3.455e+03 GT:AD:DP:GQ:PL 1/1:0,356:356:99:9358,950,0 chrVII 127817 . T C 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=127;Dels=0.00;FS=9.266;HaplotypeScore=7.2940;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-0.109;QD=21.13;ReadPosRankSum=2.410;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:2,122:127:99:2717,282,0 chrVII 127838 . C T 2818 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.02;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2851,300,0 chrVII 127920 . T A 4458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.287;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=1.518;QD=27.52;ReadPosRankSum=1.689;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4458,442,0 chrVII 128174 . C A 4144.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.68;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4144,412,0 chrVII 128183 . T C 3837.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=22.05;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3837,394,0 chrVII 128273 . C T 4506.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=19.1981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.23;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4506,466,0 chrVII 128438 . C T 4630.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.4989;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=25.58;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4630,472,0 chrVII 128542 . A G 5058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=198;Dels=0.00;FS=3.189;HaplotypeScore=11.8499;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.245;QD=25.55;ReadPosRankSum=1.645;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:5058,523,0 chrVII 128627 . A G 4613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=1.360;QD=24.80;ReadPosRankSum=1.713;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4613,469,0 chrVII 128648 . T A 4903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=203;Dels=0.00;FS=3.485;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.828;QD=24.15;ReadPosRankSum=1.715;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4903,487,0 chrVII 128890 . C G 3876.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.78;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3876,400,0 chrVII 129074 . T G 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=4.078;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.333;QD=23.50;ReadPosRankSum=1.710;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3736,394,0 chrVII 129145 . C G 3321.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.2524;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=24.24;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:3321,345,0 chrVII 129170 . G C 3416.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=24.93;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3416,352,0 chrVII 129312 . A G 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=3.068;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.684;QD=24.01;ReadPosRankSum=1.664;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3649,384,0 chrVII 129354 . G A 4361.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=25.35;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4361,436,0 chrVII 129417 . G C 4304.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.9684;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.91;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4304,448,0 chrVII 129467 . G A 5750.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=16.1692;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.02;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5750,577,0 chrVII 129502 . T G 5438.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.18;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,212:216:99:5438,556,0 chrVII 129556 . C T 4112.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.35;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4112,427,0 chrVII 130374 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.37;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2689,271,0 chrVII 130662 . T C 5123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.4565;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.368;QD=23.39;ReadPosRankSum=1.305;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:5123,532,0 chrVII 130699 . A G 5381.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.9316;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.00;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5381,582,0 chrVII 130737 . C T 6186.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.0222;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=26.78;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:6186,622,0 chrVII 130869 . T A 6250.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=23.23;SB=-3.471e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:6250,619,0 chrVII 130872 . A G 5698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.847;QD=20.95;ReadPosRankSum=1.706;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:1,270:272:99:5698,613,0 chrVII 130923 . T C 5747.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=13.6205;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.44;SB=-3.491e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:5747,619,0 chrVII 130953 . T C 6667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=270;Dels=0.00;FS=9.530;HaplotypeScore=24.1249;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.252;QD=24.69;ReadPosRankSum=2.974;SB=-3.473e+03 GT:AD:DP:GQ:PL 1/1:3,264:270:99:6667,691,0 chrVII 131035 . C G 4571.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=19.29;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:0,228:237:99:4571,478,0 chrVII 131037 . A G 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=239;Dels=0.00;FS=3.667;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-1.039;QD=18.72;ReadPosRankSum=1.703;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:1,234:239:99:4473,477,0 chrVII 131125 . G C 6452.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.99;SB=-3.452e+03 GT:AD:DP:GQ:PL 1/1:0,265:269:99:6452,682,0 chrVII 131244 . T C 3747.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=22.04;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3747,399,0 chrVII 131285 . C T 4636.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=24.27;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4636,463,0 chrVII 131383 . C T 3857.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=23.10;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3857,382,0 chrVII 131402 . C A 3351.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=22.05;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3351,337,0 chrVII 131409 . A C 3078 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=21.52;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3111,324,0 chrVII 131425 . A G 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=134;Dels=0.00;FS=8.209;HaplotypeScore=6.0522;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;MQRankSum=-0.102;QD=19.55;ReadPosRankSum=2.413;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2653,279,0 chrVII 131479 . A G 2818 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=146;Dels=0.00;FS=13.615;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;MQRankSum=-2.248;QD=19.30;ReadPosRankSum=2.580;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:2851,312,0 chrVII 131485 . A G 3078 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=19.99;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3111,327,0 chrVII 131489 . A G 3183 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=4.213;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=0.351;QD=20.80;ReadPosRankSum=1.709;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3216,333,0 chrVII 131683 . T G 3750.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.3080;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=23.01;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3750,402,0 chrVII 131699 . A C 4099.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=23.16;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4099,427,0 chrVII 131741 . A G 3915.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.9972;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=23.03;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3915,412,0 chrVII 131940 . C T 3980.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.40;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3980,394,0 chrVII 131950 . T C 4081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=195;Dels=0.00;FS=6.317;HaplotypeScore=8.4629;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.373;QD=20.93;ReadPosRankSum=2.399;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4081,429,0 chrVII 132056 . A G 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=152;Dels=0.00;FS=3.277;HaplotypeScore=12.9835;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.457;QD=23.28;ReadPosRankSum=1.709;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3539,364,0 chrVII 132427 . A G 3184 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.27;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3217,342,0 chrVII 132451 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=25.71;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3316,334,0 chrVII 132482 . C T 3093 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=25.35;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3126,316,0 chrVII 132512 . G A 2732 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.7978;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=23.55;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2765,291,0 chrVII 132768 . T C 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=120;Dels=0.00;FS=7.144;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.584;QD=22.68;ReadPosRankSum=2.347;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2755,282,0 chrVII 132772 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=22.64;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2863,297,0 chrVII 133042 . T C 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=116;Dels=0.00;FS=5.967;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.412;QD=23.04;ReadPosRankSum=2.764;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:3,112:116:99:2706,282,0 chrVII 133195 . A T 3900.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=26.17;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3900,394,0 chrVII 133288 . C T 4315.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.47;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4315,433,0 chrVII 133381 . C T 5204.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=25.64;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5204,541,0 chrVII 133645 . G A 4286.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.1283;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.76;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4286,427,0 chrVII 133650 . A C 3870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-1.368;QD=21.26;ReadPosRankSum=1.656;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3870,400,0 chrVII 133939 . A G 2880 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.23;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2913,312,0 chrVII 134043 . C T 3719.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.3540;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=23.54;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3719,373,0 chrVII 134124 . A T 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=159;Dels=0.00;FS=6.675;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.564;QD=23.41;ReadPosRankSum=2.171;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3722,373,0 chrVII 134299 . C T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;QD=19.14;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3331,337,0 chrVII 134308 . A G 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=3.384;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;MQRankSum=-0.693;QD=16.34;ReadPosRankSum=1.712;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:2811,297,0 chrVII 134315 . T C 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.40;MQ0=0;MQRankSum=-1.512;QD=15.87;ReadPosRankSum=1.712;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:2778,291,0 chrVII 134320 . C T 2669 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=15.08;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:2702,282,0 chrVII 134338 . A G 2829 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=15.05;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:2862,300,0 chrVII 134391 . C G 4351.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.5602;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.09;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4351,454,0 chrVII 134447 . C T 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.370;DP=173;Dels=0.00;FS=3.061;HaplotypeScore=19.1123;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=1.430;QD=22.38;ReadPosRankSum=0.947;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3872,364,0 chrVII 134584 . C T 3781.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=22.92;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3781,399,0 chrVII 134674 . C T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6417;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.32;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3312,334,0 chrVII 134716 . A G 3113 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.92;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3146,330,0 chrVII 134740 . T G 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=142;Dels=0.00;FS=2.992;HaplotypeScore=8.3648;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.131;QD=21.57;ReadPosRankSum=2.415;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3096,333,0 chrVII 134782 . C T 3084 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=25.07;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3117,316,0 chrVII 134806 . G A 3149 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=25.81;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3182,319,0 chrVII 134947 . C G 2919 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.63;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2952,318,0 chrVII 134991 . A G 3319.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.88;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3319,343,0 chrVII 135028 . C T 3691.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=27.54;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3691,364,0 chrVII 135046 . G A 3697.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=26.22;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3697,370,0 chrVII 135172 . A G 3051 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=23.84;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3084,316,0 chrVII 135193 . T A 2801 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=24.36;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2834,285,0 chrVII 135217 . A G 2469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=117;Dels=0.00;FS=6.036;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-1.409;QD=21.10;ReadPosRankSum=2.870;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:3,113:117:99:2502,258,0 chrVII 135415 . G A 4296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.904;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.2204;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=1.224;QD=23.35;ReadPosRankSum=1.356;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4296,435,0 chrVII 135430 . G T 4468.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.5563;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=24.42;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4468,451,0 chrVII 135703 . A G 3394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-0.546;QD=23.25;ReadPosRankSum=1.661;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3394,357,0 chrVII 135724 . A G 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=133;Dels=0.00;FS=2.588;HaplotypeScore=6.7587;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=-0.341;QD=20.73;ReadPosRankSum=2.720;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2790,291,0 chrVII 135811 . C T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.8480;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.33;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3475,355,0 chrVII 135982 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.49;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3339,348,0 chrVII 136108 . G A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.71;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3912,417,0 chrVII 136168 . G A 5403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.246;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=18.5410;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.833;QD=22.89;ReadPosRankSum=0.671;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:1,234:236:99:5403,527,0 chrVII 136222 . T C 7570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=299;Dels=0.00;FS=2.569;HaplotypeScore=24.8787;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.278;QD=25.32;ReadPosRankSum=2.942;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:3,293:299:99:7570,802,0 chrVII 136315 . T C 5803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.076;DP=241;Dels=0.00;FS=10.421;HaplotypeScore=8.8723;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=1.063;QD=24.08;ReadPosRankSum=4.106;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:6,234:241:99:5803,619,0 chrVII 136414 . T A 7441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=312;Dels=0.00;FS=4.411;HaplotypeScore=23.9689;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.378;QD=23.85;ReadPosRankSum=1.688;SB=-3.009e+03 GT:AD:DP:GQ:PL 1/1:1,311:312:99:7441,760,0 chrVII 136453 . C T 7267.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.80;SB=-3.008e+03 GT:AD:DP:GQ:PL 1/1:0,292:293:99:7267,724,0 chrVII 136498 . A C 6781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=283;Dels=0.00;FS=5.879;HaplotypeScore=16.3038;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.633;QD=23.96;ReadPosRankSum=2.975;SB=-3.483e+03 GT:AD:DP:GQ:PL 1/1:3,279:283:99:6781,718,0 chrVII 136657 . T C 4505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=226;Dels=0.00;FS=9.814;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.377;QD=19.93;ReadPosRankSum=2.888;SB=-2.890e+03 GT:AD:DP:GQ:PL 1/1:3,222:226:99:4505,466,0 chrVII 136660 . T C 4459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=229;Dels=0.00;FS=12.703;HaplotypeScore=6.6868;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.019;QD=19.47;ReadPosRankSum=3.407;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:4,225:229:99:4459,474,0 chrVII 136777 . A G 5552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=223;Dels=0.00;FS=3.013;HaplotypeScore=15.6082;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.233;QD=24.90;ReadPosRankSum=2.405;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:2,220:223:99:5552,592,0 chrVII 136894 . A G 5935.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=21.3008;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.52;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5935,628,0 chrVII 137017 . A G 6386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=263;Dels=0.00;FS=7.769;HaplotypeScore=13.3873;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.437;QD=24.28;ReadPosRankSum=2.374;SB=-2.947e+03 GT:AD:DP:GQ:PL 1/1:2,259:263:99:6386,676,0 chrVII 137326 . T C 5605.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=15.8461;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.07;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5605,601,0 chrVII 137377 . C T 5601.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=5.9132;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.83;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5601,595,0 chrVII 137398 . G T 5703.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.86;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,236:239:99:5703,577,0 chrVII 137467 . T G 4967.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.10;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4967,535,0 chrVII 137617 . A G 5203.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.5402;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=25.50;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5203,553,0 chrVII 137665 . G A 5393.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.7676;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=26.57;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:5393,541,0 chrVII 137722 . G A 4360.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=25.06;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4360,460,0 chrVII 138010 . C T 4320.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.50;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4320,430,0 chrVII 138020 . T C 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=202;Dels=0.00;FS=5.270;HaplotypeScore=10.3690;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-1.297;QD=20.60;ReadPosRankSum=2.965;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:3,197:202:99:4162,438,0 chrVII 138112 . T C 5482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.2846;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=0.066;QD=25.98;ReadPosRankSum=1.716;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:5482,568,0 chrVII 138155 . G A 5716.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.9146;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.22;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5716,610,0 chrVII 138766 . G A 3811.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.42;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3811,394,0 chrVII 138791 . C T 3761.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.65;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3761,376,0 chrVII 138853 . A T 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.342;QD=23.99;ReadPosRankSum=1.709;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3527,369,0 chrVII 139048 . C T 4017.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=16.8566;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=24.20;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4017,421,0 chrVII 139174 . G A 4215.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.2105;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=21.62;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4215,415,0 chrVII 139179 . A T 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=3.789;HaplotypeScore=5.1228;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-1.439;QD=20.70;ReadPosRankSum=1.698;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4160,421,0 chrVII 139322 . A G 5187.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=24.13;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5187,550,0 chrVII 139341 . A G 5102.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=23.51;SB=-2.945e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5102,535,0 chrVII 139372 . T C 4847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=216;Dels=0.00;FS=7.888;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.029;QD=22.44;ReadPosRankSum=2.290;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4847,502,0 chrVII 139538 . A G 3650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.4918;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;MQRankSum=0.490;QD=22.39;ReadPosRankSum=2.419;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3650,382,0 chrVII 139539 . T C 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.447;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.9692;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=-0.526;QD=23.14;ReadPosRankSum=-0.439;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,157:161:99:3725,385,0 chrVII 139626 . A G 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=3.994;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=1.687;QD=20.48;ReadPosRankSum=1.664;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3167,336,0 chrVII 139627 . A G 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=154;Dels=0.00;FS=8.118;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.962;QD=20.23;ReadPosRankSum=2.417;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:2,150:154:99:3148,327,0 chrVII 139686 . C A 2644 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.85;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2677,268,0 chrVII 139797 . C T 3384.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.34;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3384,351,0 chrVII 139824 . T C 3829.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.01;FS=0.000;HaplotypeScore=6.4875;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.35;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3829,399,0 chrVII 139909 . A G 2470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=-1.604;QD=22.66;ReadPosRankSum=1.700;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2503,261,0 chrVII 139917 . A G 2523 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=21.94;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2556,276,0 chrVII 140030 . A G 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=3.140;HaplotypeScore=4.0967;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;MQRankSum=0.408;QD=25.16;ReadPosRankSum=1.630;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3447,357,0 chrVII 140188 . C T 1671 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=20.89;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1704,168,0 chrVII 140207 . G A 1591 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.19;MQ0=0;QD=18.50;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1624,165,0 chrVII 140223 . C T 1260 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.40;MQ0=0;QD=16.80;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1293,138,0 chrVII 140227 . T A 1281 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=0;QD=18.84;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1314,132,0 chrVII 140232 . T C 1215 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=0;QD=19.60;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1248,126,0 chrVII 140234 . T G 1196 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=0;QD=19.29;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1229,126,0 chrVII 140259 . G A 702 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=0;QD=14.33;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:75:735,75,0 chrVII 140267 . C T 502 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.86;MQ0=0;QD=11.67;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,42:43:63:535,63,0 chrVII 140290 . C T 158.06 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.04;FS=0.000;HaplotypeScore=3.2453;MLEAC=2;MLEAF=1.00;MQ=34.68;MQ0=0;QD=6.08;SB=-5.807e+01 GT:AD:DP:GQ:PL 1/1:0,21:25:21:191,21,0 chrVII 140416 . C T 2416 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=27.77;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2449,243,0 chrVII 140631 . T C 4612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.2889;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.274;QD=24.15;ReadPosRankSum=1.714;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:4612,493,0 chrVII 140686 . G A 3975.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.09;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3975,397,0 chrVII 140806 . G A 4232.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.5530;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.75;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4232,448,0 chrVII 140860 . G A 4518.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.6218;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=25.38;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4518,454,0 chrVII 140941 . T C 4652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=203;Dels=0.00;FS=3.032;HaplotypeScore=11.4821;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.762;QD=22.92;ReadPosRankSum=2.400;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:2,198:203:99:4652,495,0 chrVII 141046 . A G 4131.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.44;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4131,438,0 chrVII 141082 . A C 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=187;Dels=0.00;FS=3.429;HaplotypeScore=8.1261;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.095;QD=23.96;ReadPosRankSum=1.713;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4480,475,0 chrVII 141115 . T C 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=174;Dels=0.00;FS=6.678;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.364;QD=22.11;ReadPosRankSum=0.364;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:3847,390,0 chrVII 141144 . A G 4335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=190;Dels=0.00;FS=2.843;HaplotypeScore=12.1814;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.110;QD=22.82;ReadPosRankSum=2.346;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4335,451,0 chrVII 141286 . C G 3807.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.51;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3807,405,0 chrVII 141481 . T A 4232.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=25.65;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4232,424,0 chrVII 141723 . A G 5007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=207;Dels=0.00;FS=3.032;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-1.056;QD=24.19;ReadPosRankSum=1.698;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:1,204:207:99:5007,520,0 chrVII 141743 . C T 5308.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.49;SB=-3.084e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5308,559,0 chrVII 141776 . T C 5839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=1.183;QD=23.64;ReadPosRankSum=1.704;SB=-3.325e+03 GT:AD:DP:GQ:PL 1/1:1,245:247:99:5839,604,0 chrVII 141849 . G T 5197.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=4.8145;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=23.00;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5197,517,0 chrVII 141864 . A G 4972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=220;Dels=0.00;FS=3.090;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-1.496;QD=22.60;ReadPosRankSum=1.716;SB=-3.021e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4972,514,0 chrVII 141946 . T C 5104.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.90;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5104,526,0 chrVII 142006 . C T 4546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=191;Dels=0.00;FS=4.794;HaplotypeScore=15.4010;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=1;MQRankSum=-0.750;QD=23.80;ReadPosRankSum=-1.565;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,187:191:99:4546,454,0 chrVII 142176 . G A 4326.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=18.8969;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=24.44;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4326,430,0 chrVII 142353 . C T 4091.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=26.39;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:4091,415,0 chrVII 142388 . A G 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=130;Dels=0.00;FS=2.572;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.352;QD=21.93;ReadPosRankSum=2.946;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:3,126:130:99:2884,303,0 chrVII 142398 . G T 2917 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.7210;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=22.79;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2950,300,0 chrVII 142616 . T C 2403 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.46;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2436,261,0 chrVII 142631 . A G 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=4.887;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.547;QD=22.09;ReadPosRankSum=1.702;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2551,267,0 chrVII 142677 . C T 2875 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.78;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2908,289,0 chrVII 142710 . G T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=25.97;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3324,334,0 chrVII 142935 . T C 3491.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.24;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3491,369,0 chrVII 142953 . G A 3604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.190;DP=147;Dels=0.00;FS=3.383;HaplotypeScore=5.6732;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.000;QD=24.52;ReadPosRankSum=0.522;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3604,340,0 chrVII 143025 . C T 3922.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.6488;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.14;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3922,391,0 chrVII 143073 . C T 4256.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.1099;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.60;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4256,418,0 chrVII 143359 . T C 4617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=192;Dels=0.00;FS=3.148;HaplotypeScore=10.2045;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.090;QD=24.05;ReadPosRankSum=1.678;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4617,484,0 chrVII 143748 . C T 4719.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,188:192:99:4719,487,0 chrVII 143923 . G A 3642.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6026;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.78;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3642,364,0 chrVII 144117 . C A 2052 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=23.06;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2085,213,0 chrVII 144119 . G A 1933 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;QD=21.97;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1966,198,0 chrVII 144123 . G A 1857 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=22.93;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1890,192,0 chrVII 144176 . G A 1431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=3.144;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.997;QD=21.36;ReadPosRankSum=0.787;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1464,147,0 chrVII 144257 . T C 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;MQRankSum=-0.899;QD=23.65;ReadPosRankSum=1.699;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2493,258,0 chrVII 144293 . C T 2101 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=19.28;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2134,213,0 chrVII 144298 . T C 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=111;Dels=0.00;FS=2.970;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.14;MQ0=0;MQRankSum=-1.607;QD=16.34;ReadPosRankSum=2.405;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:1847,195,0 chrVII 144318 . C T 1545 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.22;MQ0=0;QD=13.09;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1578,159,0 chrVII 144323 . G A 1344 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.3128;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;QD=11.11;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:1377,144,0 chrVII 144371 . G A 2265 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=18.57;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2298,243,0 chrVII 144459 . A G 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=4.137;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=-0.569;QD=21.86;ReadPosRankSum=1.707;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3094,333,0 chrVII 144474 . G A 2960 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=21.14;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2993,321,0 chrVII 144500 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;QD=19.88;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2756,285,0 chrVII 144516 . T A 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;MQRankSum=-0.652;QD=18.24;ReadPosRankSum=1.687;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2842,303,0 chrVII 144562 . A G 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=159;Dels=0.00;FS=2.870;HaplotypeScore=6.3358;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;MQRankSum=0.133;QD=18.80;ReadPosRankSum=2.371;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3022,324,0 chrVII 144725 . A C 3461.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=24.55;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3461,363,0 chrVII 144744 . T C 2837 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=22.34;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2870,303,0 chrVII 144765 . T A 2268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;MQRankSum=-0.013;QD=17.31;ReadPosRankSum=1.653;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2301,231,0 chrVII 144768 . C T 2285 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=17.18;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2318,234,0 chrVII 144828 . G A 3126 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.04;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3159,321,0 chrVII 144867 . T C 4098.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.14;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4098,432,0 chrVII 144924 . C T 4206.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.89;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4206,436,0 chrVII 145098 . G A 2182 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.72;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2215,225,0 chrVII 145450 . T C 538 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=18.55;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:60:571,60,0 chrVII 145485 . G A 567 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;QD=14.92;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:66:600,66,0 chrVII 145505 . C T 493 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=13.69;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:54:526,54,0 chrVII 145512 . A G 468 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=13.00;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:54:501,54,0 chrVII 145515 . G A 506 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=14.88;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:57:539,57,0 chrVII 145516 . G A 511 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=15.03;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:57:544,57,0 chrVII 145655 . A G 1290 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=26.33;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1323,138,0 chrVII 145758 . G C 1191 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=23.82;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1224,132,0 chrVII 145800 . T C 1198 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.49;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1231,132,0 chrVII 145962 . T C 5342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.3403;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.572;QD=26.19;ReadPosRankSum=1.698;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,202:204:99:5342,553,0 chrVII 146025 . G A 4408.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=24.22;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4408,436,0 chrVII 146033 . A G 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=192;Dels=0.00;FS=6.044;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=0.046;QD=21.21;ReadPosRankSum=1.622;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,188:192:99:4072,415,0 chrVII 146193 . A G 6131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=277;Dels=0.00;FS=2.553;HaplotypeScore=20.8050;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.373;QD=22.13;ReadPosRankSum=2.909;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:3,274:277:99:6131,649,0 chrVII 146595 . T C 4881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.204;DP=198;Dels=0.00;FS=8.948;HaplotypeScore=12.9198;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=-1.847;QD=24.65;ReadPosRankSum=3.416;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:4,194:198:99:4881,508,0 chrVII 146941 . A G 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=129;Dels=0.00;FS=2.765;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-0.448;QD=22.33;ReadPosRankSum=2.373;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2914,303,0 chrVII 146946 . G A 2940 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=23.52;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2973,298,0 chrVII 147192 . T C 2144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.846;QD=24.64;ReadPosRankSum=1.692;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:2177,231,0 chrVII 147207 . T C 2084 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=22.90;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2117,225,0 chrVII 147249 . G C 2140 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.6207;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.40;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2173,228,0 chrVII 147427 . T C 4210.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=23.92;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4210,439,0 chrVII 147474 . T C 3288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=-0.877;QD=20.81;ReadPosRankSum=1.710;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3288,348,0 chrVII 147477 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.200;DP=163;Dels=0.00;FS=5.257;HaplotypeScore=3.7573;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-1.257;QD=20.33;ReadPosRankSum=3.405;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:4,158:162:99:3313,345,0 chrVII 147547 . A G 4889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=212;Dels=0.00;FS=10.397;HaplotypeScore=10.5897;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.792;QD=23.06;ReadPosRankSum=2.948;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:3,209:212:99:4889,525,0 chrVII 147603 . A G 4409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.6473;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=1.028;QD=24.09;ReadPosRankSum=1.713;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4409,466,0 chrVII 147686 . A T 4482.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=23.10;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4482,463,0 chrVII 147698 . C T 4826.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=23.31;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4826,487,0 chrVII 148016 . T C 1633 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.68;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1666,177,0 chrVII 149109 . C G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3268,345,0 chrVII 152552 . C T 5676.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:5676,571,0 chrVII 153641 . C G 4512.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4512,492,0 chrVII 156057 . T C 1998 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2031,210,0 chrVII 156115 . G A 38.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=3.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:9:71,9,0 chrVII 156140 . T A 56.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.727;QD=14.24;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,3:4:9:89,9,0 chrVII 156252 . G A 3525.01 filter AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.3352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3525,352,0 chrVII 157782 . T C 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=4.079;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.417;QD=21.69;ReadPosRankSum=1.701;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2441,261,0 chrVII 157962 . G C 4105.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.3850;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.58;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,163:167:99:4105,430,0 chrVII 158256 . C T 5023.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.27;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5023,526,0 chrVII 158425 . G A 3849.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.66;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3849,385,0 chrVII 159021 . G C 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.047;DP=336;Dels=0.00;FS=4.460;HaplotypeScore=32.5196;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;MQRankSum=5.004;QD=10.88;ReadPosRankSum=14.216;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:128,206:336:99:3657,296,0 chrVII 159246 . G C 4372.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=24.70;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4372,451,0 chrVII 159705 . G A 2486 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=12.0993;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2519,255,0 chrVII 162943 . C T 928 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:96:961,96,0 chrVII 164025 . A G 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=171;Dels=0.00;FS=5.894;HaplotypeScore=11.0712;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.175;QD=22.68;ReadPosRankSum=2.910;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:3,164:171:99:3878,417,0 chrVII 164774 . T C 3719.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.31;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3719,388,0 chrVII 164885 . A G 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=3.878;HaplotypeScore=9.0859;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.077;QD=24.07;ReadPosRankSum=1.623;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3090,321,0 chrVII 165111 . T C 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.031;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.5806;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.551;QD=24.27;ReadPosRankSum=1.211;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4199,417,0 chrVII 165349 . C T 4098.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.42;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4098,412,0 chrVII 165434 . G A 3907.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=13.6807;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.21;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3907,397,0 chrVII 165469 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.83;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3700,370,0 chrVII 165497 . G C 2673 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.46;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2706,288,0 chrVII 165523 . C A 2433 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.7982;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.95;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2466,246,0 chrVII 165780 . C A 4617.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=26.69;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4617,463,0 chrVII 165842 . A G 3944.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=24.65;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3944,406,0 chrVII 165866 . A G 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=3.660;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=1.516;QD=21.67;ReadPosRankSum=1.612;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3175,345,0 chrVII 165923 . C T 3932.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.3739;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.86;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3932,409,0 chrVII 166254 . A G 648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-0.102;QD=12.71;ReadPosRankSum=1.529;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:75:681,75,0 chrVII 166257 . G A 672 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=13.18;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:75:705,75,0 chrVII 166667 . C G 2870 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=12.0458;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.92;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,115:120:99:2903,309,0 chrVII 167076 . T C 1973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=5.006;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.003;QD=20.77;ReadPosRankSum=1.696;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2006,210,0 chrVII 167099 . C T 1891 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.01;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1924,201,0 chrVII 167210 . C T 2139 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2172,219,0 chrVII 167578 . C T 2070 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=18.99;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2103,213,0 chrVII 167583 . G C 1863 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.2173;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=17.41;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:1896,201,0 chrVII 167889 . C T 3503.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.03;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3503,352,0 chrVII 167895 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.276;DP=162;Dels=0.00;FS=8.637;HaplotypeScore=2.5450;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-2.002;QD=20.46;ReadPosRankSum=3.319;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:4,158:162:99:3315,354,0 chrVII 168156 . T C 4464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=205;Dels=0.00;FS=3.437;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.401;QD=21.78;ReadPosRankSum=1.715;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:4464,469,0 chrVII 168582 . A T 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.038;QD=22.01;ReadPosRankSum=1.707;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3048,324,0 chrVII 169165 . C T 2621 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2654,267,0 chrVII 169257 . G A 2390 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2423,252,0 chrVII 169612 . A G 4334.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.91;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4334,451,0 chrVII 170211 . T C 4029.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.4385;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.88;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4029,421,0 chrVII 170641 . G A 386 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=9.65;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:42:419,42,0 chrVII 170661 . T A 211.03 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=3.3071;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=10.05;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:244,24,0 chrVII 170880 . A C 1593 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.51;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1626,171,0 chrVII 171278 . G T 752 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.50;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:78:785,78,0 chrVII 171282 . T C 717 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=21.73;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:750,75,0 chrVII 171503 . G C 2147 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=24.12;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2180,231,0 chrVII 171550 . A G 2101 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=24.15;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2134,216,0 chrVII 171569 . G A 2313 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=23.36;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2346,234,0 chrVII 171571 . A T 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=4.480;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=1.286;QD=23.30;ReadPosRankSum=1.629;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2386,234,0 chrVII 171676 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.39;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3404,372,0 chrVII 171763 . G A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.9312;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.76;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3327,337,0 chrVII 171909 . G A 4167.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.0791;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=23.15;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4167,421,0 chrVII 171921 . T C 3674.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.76;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3674,388,0 chrVII 171949 . T C 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=171;Dels=0.00;FS=2.968;HaplotypeScore=13.9775;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.228;QD=20.14;ReadPosRankSum=2.391;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:2,165:171:99:3444,363,0 chrVII 171995 . A G 3999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=3.722;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=1.490;QD=23.12;ReadPosRankSum=1.672;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3999,421,0 chrVII 172032 . T C 3930.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.87;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3930,403,0 chrVII 172111 . G A 3691.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.84;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3691,382,0 chrVII 172132 . G A 3716.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=23.37;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3716,379,0 chrVII 172210 . G A 4132.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.34;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4132,430,0 chrVII 172231 . A T 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=3.037;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=1.392;QD=23.79;ReadPosRankSum=1.711;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3878,394,0 chrVII 172407 . A T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.1847;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.68;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3457,360,0 chrVII 172596 . A G 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.627;HaplotypeScore=7.6176;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.433;QD=24.78;ReadPosRankSum=1.707;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3370,351,0 chrVII 172879 . G A 2963 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.49;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2996,318,0 chrVII 173276 . C T 3277.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.83;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3277,337,0 chrVII 173796 . T C 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.299;QD=23.75;ReadPosRankSum=1.707;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:3278,342,0 chrVII 173856 . T A 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.164;DP=155;Dels=0.00;FS=2.943;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.768;QD=23.70;ReadPosRankSum=2.323;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3674,384,0 chrVII 174098 . C G 5526.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=15.8147;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.70;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5526,565,0 chrVII 174187 . G T 6248.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.40;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:6248,637,0 chrVII 174247 . G A 5494.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.3810;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.97;SB=-3.128e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5494,547,0 chrVII 174324 . T C 6038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=262;Dels=0.00;FS=3.930;HaplotypeScore=8.7781;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.454;QD=23.05;ReadPosRankSum=1.692;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:1,261:262:99:6038,625,0 chrVII 174394 . A G 5455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.284;DP=248;Dels=0.00;FS=5.196;HaplotypeScore=15.1751;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.847;QD=22.00;ReadPosRankSum=3.397;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:4,242:248:99:5455,591,0 chrVII 174507 . A G 5790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=249;Dels=0.00;FS=4.122;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.712;QD=23.25;ReadPosRankSum=1.690;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:1,247:249:99:5790,601,0 chrVII 174523 . A G 5102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=235;Dels=0.00;FS=7.586;HaplotypeScore=7.4332;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-1.904;QD=21.71;ReadPosRankSum=2.355;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:2,233:235:99:5102,535,0 chrVII 174818 . A G 5333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.669;QD=24.13;ReadPosRankSum=1.716;SB=-2.913e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:5333,562,0 chrVII 174975 . G A 4039.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.2802;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.40;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4039,412,0 chrVII 175590 . A G 4664.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=25.08;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4664,484,0 chrVII 175787 . A G 7215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=289;Dels=0.00;FS=8.043;HaplotypeScore=13.2439;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.808;QD=24.97;ReadPosRankSum=2.415;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:2,286:289:99:7215,745,0 chrVII 175866 . G A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=21.41;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3597,367,0 chrVII 175871 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=167;Dels=0.00;FS=2.835;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=-0.451;QD=19.96;ReadPosRankSum=2.361;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3334,354,0 chrVII 175893 . C G 2963 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.01;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2996,312,0 chrVII 176107 . T C 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=3.447;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.979;QD=26.15;ReadPosRankSum=1.672;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:3040,318,0 chrVII 176415 . A G 4146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=3.547;HaplotypeScore=8.1093;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.544;QD=24.10;ReadPosRankSum=1.692;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4146,444,0 chrVII 177152 . A C 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-1.226;QD=20.61;ReadPosRankSum=1.707;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,136:140:99:2919,297,0 chrVII 177165 . C T 2923 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.14;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2956,298,0 chrVII 177524 . T C 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=3.536;HaplotypeScore=7.3461;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.872;QD=25.19;ReadPosRankSum=1.709;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3754,396,0 chrVII 177632 . C T 3715.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=24.12;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3715,376,0 chrVII 177687 . T C 3815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.979;QD=23.70;ReadPosRankSum=1.711;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3815,402,0 chrVII 177783 . C T 4513.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=16.7401;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.21;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4513,463,0 chrVII 177876 . A G 4394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=196;Dels=0.00;FS=6.500;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.059;QD=22.42;ReadPosRankSum=2.374;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4394,474,0 chrVII 177882 . T C 4200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=190;Dels=0.00;FS=6.028;HaplotypeScore=5.5694;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.931;QD=22.11;ReadPosRankSum=2.888;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:3,186:190:99:4200,445,0 chrVII 178052 . G T 4573.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.82;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4573,463,0 chrVII 178133 . G A 4683.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.9643;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=25.73;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4683,469,0 chrVII 178179 . C T 4528.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.8899;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.87;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4528,460,0 chrVII 178295 . C T 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=158;Dels=0.00;FS=3.708;HaplotypeScore=12.1554;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.436;QD=24.45;ReadPosRankSum=1.263;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,154:158:99:3863,391,0 chrVII 178402 . G A 4290.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.7815;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.38;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4290,430,0 chrVII 178509 . T C 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.976;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.0640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.704;QD=22.31;ReadPosRankSum=2.688;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:3,123:128:99:2889,277,0 chrVII 179910 . G A 3981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=161;Dels=0.00;FS=3.474;HaplotypeScore=12.5460;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.482;QD=24.73;ReadPosRankSum=-0.066;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:1,157:161:99:3981,409,0 chrVII 180027 . A G 4444.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.27;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4444,480,0 chrVII 181007 . T C 3032 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.7437;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.91;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3065,327,0 chrVII 181036 . A G 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.9471;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.219;QD=21.32;ReadPosRankSum=1.710;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3368,360,0 chrVII 181069 . C G 3648.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=18.9283;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.97;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:3648,399,0 chrVII 181138 . G A 4529.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4529,466,0 chrVII 181935 . T A 4678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.1559;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.618;QD=27.04;ReadPosRankSum=2.421;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4678,472,0 chrVII 182242 . T G 4697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.712;QD=27.47;ReadPosRankSum=1.671;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:4697,478,0 chrVII 182388 . C A 4178.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.87;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4178,418,0 chrVII 182485 . T G 5053.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.78;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:5053,523,0 chrVII 182781 . A G 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.598;QD=22.94;ReadPosRankSum=1.710;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3556,370,0 chrVII 182995 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2836,286,0 chrVII 183038 . T C 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=106;Dels=0.00;FS=7.305;HaplotypeScore=6.3524;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.128;QD=24.55;ReadPosRankSum=2.403;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2635,279,0 chrVII 183709 . T C 5162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.344;DP=224;Dels=0.00;FS=9.046;HaplotypeScore=6.3919;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.424;QD=23.04;ReadPosRankSum=3.422;SB=-2.840e+03 GT:AD:DP:GQ:PL 1/1:4,220:224:99:5162,544,0 chrVII 184145 . T A 2699 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.54;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2732,288,0 chrVII 184213 . G T 1894 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1927,198,0 chrVII 184438 . T C 3190 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3223,339,0 chrVII 184572 . C T 3134 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.07;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3167,324,0 chrVII 185240 . T G 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=156;Dels=0.00;FS=2.683;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.690;QD=22.67;ReadPosRankSum=2.402;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3536,375,0 chrVII 185280 . T C 4570.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.4600;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.85;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4570,484,0 chrVII 185620 . T C 2544 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=20.85;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2577,270,0 chrVII 185628 . G A 2521 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=21.36;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2554,255,0 chrVII 185806 . G A 999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.407;DP=64;Dels=0.00;FS=4.638;HaplotypeScore=5.5285;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;MQRankSum=-1.083;QD=15.61;ReadPosRankSum=1.678;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1032,105,0 chrVII 185836 . A G 104.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=44.4304;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;MQRankSum=-0.761;QD=1.90;ReadPosRankSum=2.451;SB=-5.620e+01 GT:AD:DP:GQ:PL 1/1:3,10:55:15:137,15,0 chrVII 185846 . G A 698 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=12.25;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:75:731,75,0 chrVII 185906 . T G 1900 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=20.88;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1933,210,0 chrVII 185982 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=21.42;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1875,192,0 chrVII 186330 . G A 5054.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.9086;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.65;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5054,508,0 chrVII 186367 . A G 5243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=222;Dels=0.00;FS=3.318;HaplotypeScore=11.8270;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.435;QD=23.62;ReadPosRankSum=1.716;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:1,218:222:99:5243,564,0 chrVII 186769 . T C 6033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.598;QD=21.70;ReadPosRankSum=-1.570;SB=-3.303e+03 GT:AD:DP:GQ:PL 1/1:1,277:278:99:6033,649,0 chrVII 186792 . C T 5945.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=6.7210;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.60;SB=-3.048e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:5945,601,0 chrVII 187003 . T C 4536.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.5499;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.65;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4536,478,0 chrVII 187054 . T G 2825 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.54;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2858,300,0 chrVII 187174 . A G 3513.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=24.06;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3513,367,0 chrVII 187348 . G T 1977 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.78;MQ0=0;QD=19.01;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2010,201,0 chrVII 187354 . A G 1698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.09;MQ0=0;MQRankSum=-1.485;QD=17.33;ReadPosRankSum=1.697;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1731,186,0 chrVII 187532 . T A 2725 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=25.00;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2758,279,0 chrVII 187556 . C G 2821 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=24.11;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2854,297,0 chrVII 187678 . A G 4329.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.6761;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=25.92;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4329,445,0 chrVII 188242 . A G 4078.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.238;DP=168;Dels=0.00;FS=9.176;HaplotypeScore=15.0903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.321;QD=24.27;ReadPosRankSum=3.407;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:4,163:168:99:4078,427,0 chrVII 188282 . T C 4102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.089;DP=170;Dels=0.00;FS=5.111;HaplotypeScore=18.2064;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.437;QD=24.13;ReadPosRankSum=3.408;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:4,166:170:99:4102,430,0 chrVII 188702 . G T 4848.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4848,496,0 chrVII 188827 . A G 3168 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3201,330,0 chrVII 189229 . A T 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.529;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.606;QD=24.29;ReadPosRankSum=1.624;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3910,406,0 chrVII 189910 . T G 4079.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.43;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4079,424,0 chrVII 190037 . C G 2786 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.4259;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2819,291,0 chrVII 190333 . C T 4086.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.03;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4086,406,0 chrVII 190505 . C T 5483.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5483,553,0 chrVII 190661 . G A 4422.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.32;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4422,439,0 chrVII 191102 . A G 8579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=359;Dels=0.00;FS=6.305;HaplotypeScore=27.4091;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.769;QD=23.90;ReadPosRankSum=2.401;SB=-4.610e+03 GT:AD:DP:GQ:PL 1/1:2,355:359:99:8579,886,0 chrVII 191348 . A G 10395.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=484;Dels=0.00;FS=3.092;HaplotypeScore=19.0338;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.836;QD=21.48;ReadPosRankSum=0.714;SB=-6.110e+03 GT:AD:DP:GQ:PL 1/1:1,482:484:99:10395,1114,0 chrVII 192332 . G C 5918.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=17.6211;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.52;SB=-3.466e+03 GT:AD:DP:GQ:PL 1/1:0,272:275:99:5918,625,0 chrVII 193477 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8299;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.95;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3450,343,0 chrVII 193691 . A G 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=157;Dels=0.00;FS=7.723;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.245;QD=23.93;ReadPosRankSum=2.418;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:3757,399,0 chrVII 193938 . C T 5689.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.9883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.40;SB=-3.009e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5689,568,0 chrVII 194505 . C T 3383.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3383,346,0 chrVII 194553 . G A 3051 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:3084,310,0 chrVII 195492 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=23.05;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3296,331,0 chrVII 195522 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=21.26;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3296,325,0 chrVII 195546 . G A 2801 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=17.73;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2834,300,0 chrVII 195549 . A G 2736 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=17.54;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:2769,288,0 chrVII 195555 . G A 2854 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.3613;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=17.51;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2887,289,0 chrVII 195692 . G A 4511.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.87;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4511,454,0 chrVII 195804 . T C 4695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.182;DP=206;Dels=0.00;FS=7.779;HaplotypeScore=18.4740;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.010;QD=22.79;ReadPosRankSum=3.813;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:5,201:206:99:4695,484,0 chrVII 195843 . A G 5981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=253;Dels=0.00;FS=5.580;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.513;QD=23.64;ReadPosRankSum=1.677;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:5981,640,0 chrVII 195912 . A G 4219.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.19;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4219,448,0 chrVII 196275 . C G 3704.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.8263;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.05;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3704,388,0 chrVII 196468 . A G 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.129;QD=23.78;ReadPosRankSum=1.703;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2910,309,0 chrVII 196504 . G C 2253 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.99;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2286,240,0 chrVII 196614 . T C 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=120;Dels=0.00;FS=2.936;HaplotypeScore=21.6831;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.375;QD=19.40;ReadPosRankSum=2.408;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2361,249,0 chrVII 196684 . G A 4171.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.7836;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=26.07;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4171,418,0 chrVII 196757 . A T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;QD=26.62;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3647,370,0 chrVII 196769 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;QD=24.12;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3145,319,0 chrVII 196840 . G A 4237.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=26.65;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4237,421,0 chrVII 196912 . G A 190.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.838;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=145.8235;MLEAC=2;MLEAF=1.00;MQ=37.72;MQ0=0;MQRankSum=1.214;QD=1.15;ReadPosRankSum=-5.471;SB=2.99 GT:AD:DP:GQ:PL 1/1:149,16:165:27:223,27,0 chrVII 196916 . A G 124.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.787;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=145.8235;MLEAC=2;MLEAF=1.00;MQ=37.37;MQ0=0;MQRankSum=0.419;QD=0.76;ReadPosRankSum=-5.529;SB=-5.713e+01 GT:AD:DP:GQ:PL 1/1:150,12:162:18:157,18,0 chrVII 196947 . C T 2521 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.56;MQ0=0;QD=14.66;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2554,261,0 chrVII 196981 . G A 1374 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=69.5886;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=10.33;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1407,147,0 chrVII 197150 . C A 5036.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=24.33;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5036,523,0 chrVII 197465 . A G 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=216;Dels=0.00;FS=6.330;HaplotypeScore=20.0152;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.611;QD=20.96;ReadPosRankSum=2.358;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4527,469,0 chrVII 197813 . T C 2311 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=92.4060;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.42;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2344,243,0 chrVII 197942 . C T 3192 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7694;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=25.33;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3225,322,0 chrVII 197989 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.7499;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=24.71;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2974,298,0 chrVII 198003 . T A 2292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=9.5450;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-1.493;QD=19.59;ReadPosRankSum=1.643;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2325,231,0 chrVII 198274 . C T 3998.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=22.34;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3998,400,0 chrVII 198286 . C T 3632.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.29;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3632,367,0 chrVII 198476 . T C 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.4748;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.378;QD=20.91;ReadPosRankSum=1.620;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3911,409,0 chrVII 199690 . A G 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.736;DP=202;Dels=0.00;FS=5.976;HaplotypeScore=25.6756;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.549;QD=21.62;ReadPosRankSum=2.954;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:3,191:202:99:4367,463,0 chrVII 199882 . A G 5784.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.74;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:5784,627,0 chrVII 199894 . A G 5958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=282;Dels=0.00;FS=5.198;HaplotypeScore=12.6442;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-0.860;QD=21.13;ReadPosRankSum=1.720;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:1,278:282:99:5958,613,0 chrVII 199999 . G C 5744.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=25.1927;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.53;SB=-3.157e+03 GT:AD:DP:GQ:PL 1/1:0,249:255:99:5744,598,0 chrVII 200351 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3722,370,0 chrVII 200448 . G A 4457.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=18.2151;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.96;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4457,442,0 chrVII 200728 . C T 3596.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.90;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3596,378,0 chrVII 201093 . C T 4802.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.68;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4802,481,0 chrVII 201499 . G A 2548 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.16;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2581,273,0 chrVII 201788 . G A 4302.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=17.3465;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.16;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4302,430,0 chrVII 201855 . T C 5022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=201;Dels=0.00;FS=2.892;HaplotypeScore=17.2110;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.190;QD=24.99;ReadPosRankSum=2.413;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:5022,520,0 chrVII 202039 . T G 4988.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.1226;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.82;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4988,526,0 chrVII 202082 . A T 4665.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.9518;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.22;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4665,466,0 chrVII 202475 . A G 2903 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.6455;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.80;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2936,309,0 chrVII 202531 . T C 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8145;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=23.59;ReadPosRankSum=1.636;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2581,273,0 chrVII 202665 . T A 3212.98 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.62;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3246,336,0 chrVII 203122 . G C 3952.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3952,409,0 chrVII 203677 . A G 3148 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=23.67;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3181,339,0 chrVII 203693 . A G 3121 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=24.01;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3154,330,0 chrVII 203815 . C G 2108 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,88:92:99:2141,228,0 chrVII 203897 . A T 1536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.506;QD=23.63;ReadPosRankSum=1.626;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1569,153,0 chrVII 203987 . A T 543 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=14.68;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:60:576,60,0 chrVII 204007 . C T 984 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.43;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1017,102,0 chrVII 204092 . T G 1368 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=25.33;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1401,144,0 chrVII 204149 . G T 1421 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3001;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=26.81;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1454,147,0 chrVII 204226 . G A 1988 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.85;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:2021,204,0 chrVII 204286 . G A 1738 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.57;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1771,183,0 chrVII 204321 . A G 1735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=2.894;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-0.937;QD=23.13;ReadPosRankSum=2.384;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1768,186,0 chrVII 204339 . G A 1818 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.1330;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.31;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1851,195,0 chrVII 204665 . T G 2165 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.4273;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.03;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2198,234,0 chrVII 204972 . G A 2326 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.74;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2359,234,0 chrVII 205031 . C T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.67;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3840,385,0 chrVII 205152 . C T 1786 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.81;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1819,189,0 chrVII 205307 . T A 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.660;DP=98;Dels=0.00;FS=6.134;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.701;QD=23.33;ReadPosRankSum=2.908;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:3,95:98:99:2319,243,0 chrVII 205559 . C A 2995 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.1657;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=24.15;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3028,304,0 chrVII 205830 . T G 1482 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.87;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1515,156,0 chrVII 205832 . C T 1500 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.55;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1533,150,0 chrVII 205894 . T C 2087 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.87;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2120,225,0 chrVII 206526 . T C 1281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=76;Dels=0.00;FS=2.770;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;MQRankSum=-0.990;QD=16.86;ReadPosRankSum=2.385;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1314,138,0 chrVII 206532 . A T 1178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=4.551;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;MQRankSum=-1.147;QD=15.30;ReadPosRankSum=1.687;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1211,123,0 chrVII 206685 . A C 2509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=118;Dels=0.01;FS=8.482;HaplotypeScore=24.2005;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-0.562;QD=21.26;ReadPosRankSum=2.344;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2542,267,0 chrVII 206716 . T C 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;MQRankSum=0.462;QD=21.65;ReadPosRankSum=1.703;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2631,282,0 chrVII 206722 . G A 2751 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=21.66;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2784,274,0 chrVII 206738 . T C 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=-0.687;QD=20.51;ReadPosRankSum=1.705;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2617,267,0 chrVII 207056 . A T 3756.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.19;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3756,376,0 chrVII 207071 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.76;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3460,360,0 chrVII 207180 . G A 3051 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.27;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3084,307,0 chrVII 207481 . C T 3548.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=25.90;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3548,355,0 chrVII 207520 . C A 3273.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.85;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3273,328,0 chrVII 207523 . T C 3115 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=19.47;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3148,327,0 chrVII 207551 . T C 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=3.261;HaplotypeScore=11.3477;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-0.681;QD=20.61;ReadPosRankSum=1.713;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3690,382,0 chrVII 207761 . A G 4368.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.9088;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=22.63;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4368,468,0 chrVII 207781 . T G 4624.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=23.35;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4624,487,0 chrVII 207893 . A G 6025.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=16.6910;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.00;SB=-3.103e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:6025,634,0 chrVII 208001 . C A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.20;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3616,378,0 chrVII 208005 . T C 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=178;Dels=0.00;FS=7.311;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;MQRankSum=-0.780;QD=19.30;ReadPosRankSum=2.422;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3435,355,0 chrVII 208034 . C T 3521.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=16.61;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:3521,366,0 chrVII 208043 . T A 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=219;Dels=0.00;FS=7.009;HaplotypeScore=11.6487;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=-0.342;QD=17.01;ReadPosRankSum=2.405;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:3725,384,0 chrVII 208280 . G C 5086.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.5326;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=24.81;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5086,529,0 chrVII 208340 . T C 5991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=266;Dels=0.00;FS=3.865;HaplotypeScore=26.1725;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.482;QD=22.52;ReadPosRankSum=1.693;SB=-2.934e+03 GT:AD:DP:GQ:PL 1/1:1,262:266:99:5991,651,0 chrVII 208469 . C T 3883.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.42;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3883,385,0 chrVII 208555 . A T 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.742;QD=23.95;ReadPosRankSum=1.707;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3353,343,0 chrVII 208622 . G A 2925 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=23.59;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2958,309,0 chrVII 208634 . T C 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=111;Dels=0.00;FS=6.897;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=0.414;QD=23.36;ReadPosRankSum=2.383;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2626,276,0 chrVII 208689 . T C 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=113;Dels=0.00;FS=2.729;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-2.428;QD=23.62;ReadPosRankSum=2.406;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2702,285,0 chrVII 208784 . T C 385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=91;Dels=0.00;FS=7.653;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;MQRankSum=-2.044;QD=4.23;ReadPosRankSum=2.342;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:45:418,45,0 chrVII 208835 . G T 1988 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.08;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2021,210,0 chrVII 209011 . T C 2591 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=25.40;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2624,279,0 chrVII 209066 . A G 3479.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.96;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3479,366,0 chrVII 209671 . G T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3519,366,0 chrVII 210027 . T C 1283 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.05;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1316,141,0 chrVII 210194 . A G 2815 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=25.83;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2848,300,0 chrVII 210517 . T C 2594 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.80;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2627,279,0 chrVII 210538 . T C 2335 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.42;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2368,249,0 chrVII 210629 . C T 4834.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.99;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4834,481,0 chrVII 210745 . C T 3998.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.24;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3998,426,0 chrVII 210785 . A G 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=152;Dels=0.00;FS=3.372;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.115;QD=22.58;ReadPosRankSum=1.663;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3432,360,0 chrVII 210946 . T C 4577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=189;Dels=0.00;FS=6.766;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.579;QD=24.22;ReadPosRankSum=2.411;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4577,487,0 chrVII 211015 . G A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.21;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4109,435,0 chrVII 211576 . G A 2951 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.22;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2984,298,0 chrVII 211876 . A G 4922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.331;DP=230;Dels=0.00;FS=9.134;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.118;QD=21.40;ReadPosRankSum=3.422;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:4,225:230:99:4922,514,0 chrVII 211884 . A G 4975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.403;QD=21.44;ReadPosRankSum=1.687;SB=-3.114e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:4975,523,0 chrVII 211975 . C T 5735.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.70;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5735,604,0 chrVII 212009 . T C 5196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=213;Dels=0.00;FS=8.053;HaplotypeScore=22.0804;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.862;QD=24.39;ReadPosRankSum=2.403;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:2,207:213:99:5196,541,0 chrVII 212128 . C T 4039.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.3831;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=23.08;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4039,426,0 chrVII 212216 . T C 4563.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.78;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4563,469,0 chrVII 212554 . G A 5557.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=15.9583;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.81;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5557,559,0 chrVII 212597 . A G 4148.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=18.1719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4148,444,0 chrVII 212679 . A T 5011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.625;QD=25.70;ReadPosRankSum=1.714;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:5011,499,0 chrVII 212731 . C T 4590.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.08;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4590,484,0 chrVII 212869 . G A 3872.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.14;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3872,391,0 chrVII 213119 . G A 3736.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.6090;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.64;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3736,382,0 chrVII 213175 . G A 5370.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.5594;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.32;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5370,535,0 chrVII 213220 . G A 5157.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.28;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5157,517,0 chrVII 213795 . T G 39.97 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=0.54;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:9:72,9,0 chrVII 214328 . T C 4302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=196;Dels=0.00;FS=3.991;HaplotypeScore=17.4382;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.086;QD=21.95;ReadPosRankSum=1.714;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,192:196:99:4302,459,0 chrVII 214440 . G A 5262.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=25.30;SB=-2.836e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5262,529,0 chrVII 214473 . G C 4122.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.4569;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.55;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,168:175:99:4122,438,0 chrVII 214758 . C G 6145.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=17.4564;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.93;SB=-3.280e+03 GT:AD:DP:GQ:PL 1/1:0,266:268:99:6145,664,0 chrVII 214926 . C T 6204.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=23.1449;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.50;SB=-2.804e+03 GT:AD:DP:GQ:PL 1/1:0,259:264:99:6204,649,0 chrVII 215575 . A G 4593.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.1592;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.55;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4593,495,0 chrVII 215800 . G T 3878.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.65;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3878,403,0 chrVII 215891 . C T 3736.01 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=21.72;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3736,370,0 chrVII 215893 . G A 3535.01 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=21.04;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3535,366,0 chrVII 215900 . T C 3203 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=168;Dels=0.00;FS=7.274;HaplotypeScore=4.0376;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=0.490;QD=19.07;ReadPosRankSum=2.347;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3236,339,0 chrVII 215909 . C T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=19.35;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3367,334,0 chrVII 216083 . G A 3116 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.94;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3149,316,0 chrVII 216137 . T A 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=3.245;HaplotypeScore=15.2850;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=0.296;QD=22.47;ReadPosRankSum=1.709;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3416,346,0 chrVII 216207 . A G 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=141;Dels=0.01;FS=11.752;HaplotypeScore=14.8453;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.573;QD=24.69;ReadPosRankSum=2.863;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:3,136:140:99:3481,360,0 chrVII 216267 . T C 2814 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.69;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2847,303,0 chrVII 216479 . T C 4530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.075;QD=25.89;ReadPosRankSum=1.692;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4530,475,0 chrVII 216641 . T A 4705.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=16.5112;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.38;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4705,490,0 chrVII 216695 . G A 5975.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=13.3753;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.44;SB=-3.105e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5975,595,0 chrVII 216869 . A G 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=164;Dels=0.00;FS=2.657;HaplotypeScore=12.7130;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.183;QD=20.84;ReadPosRankSum=2.419;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3418,354,0 chrVII 217016 . C T 3558.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.06;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3558,367,0 chrVII 217362 . A G 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=177;Dels=0.00;FS=6.095;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;MQRankSum=-0.229;QD=19.65;ReadPosRankSum=2.408;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3478,369,0 chrVII 217364 . G A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=20.35;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3562,370,0 chrVII 217417 . G C 3122 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.3834;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=17.34;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,175:180:99:3155,327,0 chrVII 217455 . C A 2809 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=20.81;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2842,297,0 chrVII 217457 . A G 2704 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=136;Dels=0.00;FS=3.209;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=-0.801;QD=19.88;ReadPosRankSum=1.706;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:2737,288,0 chrVII 217461 . A G 2689 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=137;Dels=0.00;FS=10.175;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=-0.366;QD=19.63;ReadPosRankSum=2.947;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:3,129:137:99:2722,282,0 chrVII 217776 . G T 3167 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.12;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3200,319,0 chrVII 217800 . T C 4056.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.4303;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.00;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4056,424,0 chrVII 217847 . A G 3963.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.4133;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.77;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3963,429,0 chrVII 218139 . G A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.17;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3674,373,0 chrVII 218213 . T A 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=137;Dels=0.00;FS=3.733;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;MQRankSum=0.215;QD=22.44;ReadPosRankSum=1.656;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3107,315,0 chrVII 218225 . A G 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.643;DP=117;Dels=0.00;FS=3.522;HaplotypeScore=2.9565;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;MQRankSum=-0.844;QD=21.58;ReadPosRankSum=1.229;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2558,267,0 chrVII 218227 . C A 2671 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.7452;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=22.64;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2704,270,0 chrVII 218285 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.63;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2609,264,0 chrVII 218390 . G A 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.4152;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.604;QD=25.71;ReadPosRankSum=0.840;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,131:135:99:3471,346,0 chrVII 218492 . T C 3066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=148;Dels=0.00;FS=2.915;HaplotypeScore=5.3254;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-0.594;QD=20.72;ReadPosRankSum=2.383;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3099,324,0 chrVII 218498 . T C 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.4814;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-0.203;QD=20.22;ReadPosRankSum=2.308;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2844,294,0 chrVII 218949 . C A 3856.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.3361;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.42;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3856,388,0 chrVII 218961 . T G 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=3.031;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-0.083;QD=20.52;ReadPosRankSum=2.359;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3344,346,0 chrVII 221007 . G T 2218 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.49;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:2251,231,0 chrVII 224828 . C T 8113.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=19.9613;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.65;SB=-3.033e+03 GT:AD:DP:GQ:PL 1/1:0,340:343:99:8113,814,0 chrVII 224858 . T C 9234.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.125;DP=425;Dels=0.00;FS=7.272;HaplotypeScore=24.4610;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.812;QD=21.73;ReadPosRankSum=4.179;SB=-3.393e+03 GT:AD:DP:GQ:PL 1/1:6,417:425:99:9234,964,0 chrVII 226152 . C T 6524.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=18.1196;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-3.081e+03 GT:AD:DP:GQ:PL 1/1:0,270:272:99:6524,652,0 chrVII 228148 . C T 6329.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=23.88;SB=-3.531e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:6329,631,0 chrVII 228713 . T A 2226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=90;Dels=0.00;FS=3.024;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.972;QD=24.73;ReadPosRankSum=2.313;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2259,225,0 chrVII 229848 . T C 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.903;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.2170;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.461;QD=23.03;ReadPosRankSum=2.176;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:3,153:158:99:3638,381,0 chrVII 230196 . T A 3105 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=23.17;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3138,313,0 chrVII 230207 . A G 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=6.842;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.370;QD=19.52;ReadPosRankSum=1.708;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2863,312,0 chrVII 230594 . G T 3969.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3969,397,0 chrVII 231071 . G A 4769.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.5318;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.35;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4769,469,0 chrVII 231712 . A G 3757.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.5282;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.48;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3757,405,0 chrVII 231817 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.80;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3561,373,0 chrVII 232131 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.72;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3265,345,0 chrVII 232615 . T A 4577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.600;QD=24.74;ReadPosRankSum=1.713;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4577,460,0 chrVII 232997 . C T 3803.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.6244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3803,379,0 chrVII 241508 . T C 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=127;Dels=0.00;FS=7.430;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.050;QD=21.65;ReadPosRankSum=2.370;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,122:127:99:2782,294,0 chrVII 241708 . T A 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=108;Dels=0.00;FS=3.048;HaplotypeScore=11.1879;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.116;QD=24.16;ReadPosRankSum=2.358;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2642,264,0 chrVII 244535 . C A 6831.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=13.6613;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=24.93;SB=-3.723e+03 GT:AD:DP:GQ:PL 1/1:0,271:274:99:6831,685,0 chrVII 246159 . C T 5394.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.19;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5394,562,0 chrVII 248225 . G C 755 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:84:788,84,0 chrVII 249399 . A G 2618 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2651,273,0 chrVII 249605 . A G 1402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.671;QD=22.61;ReadPosRankSum=1.676;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1435,156,0 chrVII 249712 . A T 2879 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.0613;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.16;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2912,298,0 chrVII 250183 . C A 4675.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.1639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4675,475,0 chrVII 250680 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.79;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4010,409,0 chrVII 251325 . C T 4196.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.6723;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.68;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4196,433,0 chrVII 252804 . A T 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=22.98;ReadPosRankSum=1.679;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3020,321,0 chrVII 253360 . G A 3711.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=16.7525;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3711,373,0 chrVII 253916 . T C 3616.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.32;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3616,376,0 chrVII 254177 . A G 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=4.516;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.647;QD=24.14;ReadPosRankSum=1.697;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2423,249,0 chrVII 256487 . A G 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=154;Dels=0.00;FS=6.071;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.209;QD=22.58;ReadPosRankSum=2.876;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3477,366,0 chrVII 256673 . G A 4329.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.0447;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4329,439,0 chrVII 256814 . T C 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=145;Dels=0.00;FS=4.538;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=0.800;QD=21.19;ReadPosRankSum=1.637;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3105,330,0 chrVII 256831 . T C 2976 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.55;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3009,312,0 chrVII 256952 . C T 3000 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3033,304,0 chrVII 257078 . A T 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=105;Dels=0.00;FS=8.451;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-0.363;QD=24.33;ReadPosRankSum=2.403;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2588,261,0 chrVII 257091 . T G 2252 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=23.22;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2285,243,0 chrVII 257334 . G A 644 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=18.40;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:69:677,69,0 chrVII 257349 . T A 561 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.04;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:60:594,60,0 chrVII 266080 . T G 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.8579;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.598;QD=23.52;ReadPosRankSum=1.711;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3975,418,0 chrVII 267395 . T G 172.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.161;DP=142;Dels=0.00;FS=256.905;HaplotypeScore=11.7456;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=0;MQRankSum=-0.216;QD=1.21;ReadPosRankSum=-6.783;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,58:142:99:202,0,1701 chrVII 267458 . C T 2971 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.34;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3004,301,0 chrVII 270688 . T C 4862.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.61;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4862,517,0 chrVII 271308 . C T 10665.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=436;Dels=0.00;FS=3.241;HaplotypeScore=23.9995;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.708;QD=24.46;ReadPosRankSum=-0.407;SB=-5.793e+03 GT:AD:DP:GQ:PL 1/1:1,426:436:99:10665,1073,0 chrVII 271816 . C T 20091.01 filter AC=2;AF=1.00;AN=2;DP=845;Dels=0.00;FS=0.000;HaplotypeScore=50.4503;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.78;SB=-1.007e+04 GT:AD:DP:GQ:PL 1/1:0,844:845:99:20091,2052,0 chrVII 272227 . A T 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.732;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=22.1720;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.458;QD=18.88;ReadPosRankSum=2.923;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3223,322,0 chrVII 273424 . C T 6761.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=18.9509;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.68;SB=-3.790e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6761,676,0 chrVII 273458 . G A 7012.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=16.5886;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.52;SB=-3.726e+03 GT:AD:DP:GQ:PL 1/1:0,285:286:99:7012,733,0 chrVII 273503 . A G 7519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=296;Dels=0.00;FS=3.314;HaplotypeScore=14.8890;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.796;QD=25.40;ReadPosRankSum=1.685;SB=-3.669e+03 GT:AD:DP:GQ:PL 1/1:1,295:296:99:7519,778,0 chrVII 274142 . G A 4932.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.06;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4932,496,0 chrVII 274448 . A C 1369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.084;QD=16.70;ReadPosRankSum=1.690;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1402,147,0 chrVII 275009 . T C 5082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=212;Dels=0.00;FS=2.782;HaplotypeScore=13.2358;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.762;QD=23.97;ReadPosRankSum=2.380;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:2,209:212:99:5082,538,0 chrVII 275322 . C T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.9821;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3970,400,0 chrVII 275701 . C T 2664 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.02;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2697,279,0 chrVII 275758 . A G 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.540;QD=22.56;ReadPosRankSum=1.677;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2853,300,0 chrVII 275782 . T C 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=3.497;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.128;QD=21.59;ReadPosRankSum=1.680;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2905,306,0 chrVII 276180 . G A 4707.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4707,466,0 chrVII 276276 . C T 4036.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.76;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4036,406,0 chrVII 276379 . G A 3774.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.4115;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.19;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3774,397,0 chrVII 276429 . A G 3548.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.97;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3548,369,0 chrVII 276488 . G T 4102.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.86;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4102,427,0 chrVII 276671 . C T 4735.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.53;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4735,472,0 chrVII 280080 . A C 72.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.068;DP=71;Dels=0.00;FS=2.824;HaplotypeScore=180.9385;MLEAC=2;MLEAF=1.00;MQ=37.19;MQ0=0;MQRankSum=-2.172;QD=1.02;ReadPosRankSum=2.381;SB=-7.835e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:12:105,12,0 chrVII 280134 . C A 767 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=64.3350;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=6.45;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:81:800,81,0 chrVII 280135 . T A 821 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=65.2017;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;QD=6.73;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:87:854,87,0 chrVII 281475 . C T 1694 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.91;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1727,186,0 chrVII 284212 . C G 2765 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2798,294,0 chrVII 284855 . A G 4284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=172;Dels=0.00;FS=6.849;HaplotypeScore=13.0448;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.208;QD=24.91;ReadPosRankSum=2.363;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:4284,454,0 chrVII 285293 . A T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.9324;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.70;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3727,379,0 chrVII 286047 . C T 1391 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.29;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1424,144,0 chrVII 286154 . G C 1811 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.63;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1844,189,0 chrVII 286247 . G A 2705 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=26.52;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2738,271,0 chrVII 286632 . A G 4642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=184;Dels=0.00;FS=4.448;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.392;QD=25.23;ReadPosRankSum=1.694;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,180:184:99:4642,481,0 chrVII 286703 . G A 4202.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.4618;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.57;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:4202,427,0 chrVII 287266 . G A 4224.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.0058;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.99;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4224,427,0 chrVII 288306 . T G 3023 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.38;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3056,310,0 chrVII 288473 . G A 2895 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=20.68;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2928,292,0 chrVII 289212 . T C 4562.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4562,487,0 chrVII 290162 . G C 5662.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.4790;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.20;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5662,604,0 chrVII 291088 . C G 6809.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=12.3474;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=25.41;SB=-3.467e+03 GT:AD:DP:GQ:PL 1/1:0,266:268:99:6809,706,0 chrVII 291494 . A G 3629.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.6149;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.03;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3629,376,0 chrVII 291643 . A G 2605 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=109.0162;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=19.01;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2638,279,0 chrVII 291653 . A G 28.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.782;DP=142;Dels=0.00;FS=18.249;HaplotypeScore=6.3819;MLEAC=1;MLEAF=0.500;MQ=52.39;MQ0=0;MQRankSum=0.460;QD=0.20;ReadPosRankSum=5.680;SB=-1.466e+03 GT:AD:DP:GQ:PL 0/1:13,129:142:11:58,0,11 chrVII 291925 . T C 4267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.376;QD=25.55;ReadPosRankSum=1.690;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:4267,453,0 chrVII 291992 . G A 5041.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:0,200:204:99:5041,523,0 chrVII 293254 . T C 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=178;Dels=0.00;FS=7.425;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.600;QD=19.84;ReadPosRankSum=2.394;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3532,378,0 chrVII 293255 . G A 3717.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.65;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3717,379,0 chrVII 293357 . G A 4526.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.5193;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=23.70;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4526,460,0 chrVII 293358 . G A 4695.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.1964;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=23.83;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,192:197:99:4695,469,0 chrVII 294111 . G A 2552 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.78;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2585,255,0 chrVII 294404 . T C 5030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.202;QD=25.66;ReadPosRankSum=1.679;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:5030,532,0 chrVII 294462 . A G 5456.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.1250;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-3.019e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5456,562,0 chrVII 295605 . C G 1310 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1343,144,0 chrVII 297533 . T A 4978.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.05;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4978,511,0 chrVII 298874 . C T 4010.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.87;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:4010,409,0 chrVII 299216 . A G 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=165;Dels=0.00;FS=2.741;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-2.193;QD=21.92;ReadPosRankSum=2.419;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3617,381,0 chrVII 299249 . G A 3964.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3964,397,0 chrVII 299630 . C G 4867.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.9131;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.98;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4867,514,0 chrVII 299664 . T C 4574.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.6454;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.46;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4574,475,0 chrVII 299945 . T A 4740.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=25.90;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4740,499,0 chrVII 300190 . G A 4607.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4607,463,0 chrVII 300493 . T C 2213 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.49;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2246,240,0 chrVII 300952 . T C 4314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=187;Dels=0.00;FS=3.081;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.361;QD=23.07;ReadPosRankSum=1.695;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4314,462,0 chrVII 301018 . T C 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=171;Dels=0.00;FS=2.682;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.632;QD=23.80;ReadPosRankSum=2.406;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:2,167:171:99:4069,427,0 chrVII 301042 . G A 3946.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.68;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3946,435,0 chrVII 301132 . G C 4374.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.90;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,179:183:99:4374,460,0 chrVII 301260 . G A 4558.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.9893;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=25.32;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4558,454,0 chrVII 301324 . G A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4318;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=24.14;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3597,358,0 chrVII 301392 . G A 4052.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=24.12;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4052,403,0 chrVII 301405 . A G 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=155;Dels=0.00;FS=5.627;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-0.471;QD=22.28;ReadPosRankSum=2.955;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3454,363,0 chrVII 301525 . T A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.9370;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.30;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3451,355,0 chrVII 301819 . G T 4177.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.48;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4177,415,0 chrVII 301891 . A T 3644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=159;Dels=0.00;FS=3.263;HaplotypeScore=10.6405;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.773;QD=22.92;ReadPosRankSum=1.558;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3644,373,0 chrVII 302104 . A G 3518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=174;Dels=0.00;FS=12.612;HaplotypeScore=14.0614;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.432;QD=20.22;ReadPosRankSum=3.378;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:4,168:174:99:3518,381,0 chrVII 302319 . A G 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=151;Dels=0.00;FS=2.766;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.762;QD=22.39;ReadPosRankSum=2.384;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3381,349,0 chrVII 302394 . A G 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=138;Dels=0.00;FS=6.105;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.153;QD=24.96;ReadPosRankSum=2.920;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3444,357,0 chrVII 302483 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.14;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2902,300,0 chrVII 302623 . A C 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.605;QD=23.52;ReadPosRankSum=1.707;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3255,348,0 chrVII 302788 . G A 3078 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.7979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3111,310,0 chrVII 303261 . T C 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=3.416;HaplotypeScore=9.3780;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.959;QD=22.71;ReadPosRankSum=1.639;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2576,270,0 chrVII 303645 . T C 4240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.202;DP=171;Dels=0.00;FS=2.416;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.992;QD=24.80;ReadPosRankSum=3.357;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:4,166:171:99:4240,448,0 chrVII 303887 . C T 5626.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.06;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5626,562,0 chrVII 304107 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.6776;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.26;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3150,327,0 chrVII 304214 . T A 3910.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.9885;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3910,391,0 chrVII 304566 . T C 4664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=195;Dels=0.00;FS=5.377;HaplotypeScore=9.6722;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.510;QD=23.92;ReadPosRankSum=2.964;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:3,192:195:99:4664,490,0 chrVII 304604 . G A 4832.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.92;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4832,484,0 chrVII 304609 . A T 4450.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.36;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4450,460,0 chrVII 305019 . T C 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=126;Dels=0.00;FS=3.005;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.884;QD=23.95;ReadPosRankSum=2.411;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:3051,336,0 chrVII 305928 . G C 4826.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4826,519,0 chrVII 306050 . A G 4874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=215;Dels=0.00;FS=6.165;HaplotypeScore=15.2476;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.582;QD=22.67;ReadPosRankSum=2.426;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:2,211:215:99:4874,511,0 chrVII 306650 . C T 8725.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=18.2429;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.28;SB=-3.196e+03 GT:AD:DP:GQ:PL 1/1:0,328:332:99:8725,866,0 chrVII 307064 . C G 3798.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.82;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3798,394,0 chrVII 307499 . T C 4915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.186;DP=205;Dels=0.00;FS=2.397;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.133;QD=23.98;ReadPosRankSum=3.340;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:4,200:205:99:4915,514,0 chrVII 307742 . T C 6887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=287;Dels=0.00;FS=10.082;HaplotypeScore=12.8091;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=-0.201;QD=24.00;ReadPosRankSum=2.933;SB=-3.547e+03 GT:AD:DP:GQ:PL 1/1:3,282:287:99:6887,742,0 chrVII 307868 . C T 6118.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=10.9686;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.57;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:6118,619,0 chrVII 308800 . A G 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=124;Dels=0.00;FS=3.036;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.817;QD=24.45;ReadPosRankSum=2.369;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:2,120:124:99:3065,321,0 chrVII 309331 . G C 3186 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=16.2425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3219,348,0 chrVII 309574 . T C 3583.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6354;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.42;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3583,378,0 chrVII 310446 . C G 4087.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.62;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4087,424,0 chrVII 310527 . G A 3172 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=23.32;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3205,328,0 chrVII 310538 . A T 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.00;FS=3.042;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-1.184;QD=23.52;ReadPosRankSum=2.395;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3185,333,0 chrVII 310899 . G A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3737,379,0 chrVII 311272 . C T 4257.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.01;FS=0.000;HaplotypeScore=30.9597;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.52;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4257,427,0 chrVII 311762 . T C 3166 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.93;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3199,336,0 chrVII 311795 . A T 2496 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.8186;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.77;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2529,255,0 chrVII 311949 . G T 1934 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.4613;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.49;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,85:90:99:1967,198,0 chrVII 312743 . T G 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=3.948;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.336;QD=22.18;ReadPosRankSum=1.707;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3138,330,0 chrVII 312897 . C T 3066 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.34;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3099,310,0 chrVII 312966 . C T 2749 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2782,285,0 chrVII 314617 . G A 2835 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.75;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2868,294,0 chrVII 315021 . G A 4643.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4643,490,0 chrVII 315309 . G A 3907.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3907,409,0 chrVII 315504 . A G 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9705;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.420;QD=24.43;ReadPosRankSum=1.706;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3274,345,0 chrVII 316175 . G A 6220.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.70;SB=-3.069e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:6220,619,0 chrVII 316588 . G A 1936 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.20;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1969,204,0 chrVII 316663 . C A 1613 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.72;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1646,171,0 chrVII 325250 . G A 2901 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.02;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2934,300,0 chrVII 327457 . A G 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.471;DP=140;Dels=0.00;FS=2.381;HaplotypeScore=11.6623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.718;QD=24.40;ReadPosRankSum=1.689;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:3,136:140:99:3416,346,0 chrVII 329109 . A G 4517.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.01;FS=0.000;HaplotypeScore=17.8200;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=24.55;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4517,463,0 chrVII 329347 . T C 3060 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.01;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3093,316,0 chrVII 329356 . G A 3177 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.53;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3210,322,0 chrVII 329451 . A G 3588.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.08;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3588,390,0 chrVII 330839 . G C 3808.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4008;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.67;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3808,411,0 chrVII 330978 . T G 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=6.088;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.519;QD=24.35;ReadPosRankSum=1.705;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3199,339,0 chrVII 334704 . T C 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.352;DP=148;Dels=0.00;FS=5.233;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.089;QD=21.09;ReadPosRankSum=3.328;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:4,143:148:99:3154,330,0 chrVII 334767 . T A 1640 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=13.90;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1673,168,0 chrVII 334768 . T G 1557 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=121;Dels=0.00;FS=5.669;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;MQRankSum=-0.208;QD=12.87;ReadPosRankSum=2.942;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:1590,168,0 chrVII 334769 . T A 1641 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=123;Dels=0.00;FS=2.867;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;MQRankSum=0.010;QD=13.34;ReadPosRankSum=2.410;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:1674,168,0 chrVII 334770 . T A 1637 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.702;DP=125;Dels=0.00;FS=5.540;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;MQRankSum=-0.395;QD=13.10;ReadPosRankSum=2.944;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:1670,168,0 chrVII 334833 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.68;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3365,331,0 chrVII 335555 . A G 5008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=216;Dels=0.00;FS=6.374;HaplotypeScore=12.6071;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.109;QD=23.19;ReadPosRankSum=2.335;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:2,212:216:99:5008,526,0 chrVII 336790 . C T 3025 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=25.00;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:3058,310,0 chrVII 336889 . G A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2755;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=26.39;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3457,363,0 chrVII 337273 . A G 3693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=148;Dels=0.00;FS=3.038;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.928;QD=24.95;ReadPosRankSum=2.383;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3693,382,0 chrVII 337412 . A G 3986.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3986,423,0 chrVII 338951 . T A 4464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=177;Dels=0.00;FS=3.729;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.969;QD=25.22;ReadPosRankSum=1.713;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4464,448,0 chrVII 339606 . G T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.35;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3247,342,0 chrVII 340285 . G A 2557 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.07;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2590,264,0 chrVII 340586 . C T 3746.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.0034;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3746,376,0 chrVII 341281 . G A 5467.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.43;SB=-2.853e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5467,538,0 chrVII 342051 . A G 2774 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.3332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.42;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2807,291,0 chrVII 345982 . C A 3154 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.64;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3187,319,0 chrVII 347264 . G T 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=3.407;HaplotypeScore=4.2918;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.593;QD=24.76;ReadPosRankSum=-0.012;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3689,376,0 chrVII 347577 . T C 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-0.280;QD=22.44;ReadPosRankSum=1.707;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:3130,330,0 chrVII 347594 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.0852;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=1.679;QD=21.67;ReadPosRankSum=2.128;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3315,329,0 chrVII 347717 . T G 4966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=199;Dels=0.00;FS=3.211;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.140;QD=24.95;ReadPosRankSum=1.697;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4966,520,0 chrVII 348160 . G A 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148;DP=11;Dels=0.00;FS=6.854;HaplotypeScore=3.2482;MLEAC=1;MLEAF=0.500;MQ=42.94;MQ0=0;MQRankSum=0.103;QD=2.91;ReadPosRankSum=-1.951;SB=-1.496e+01 GT:AD:DP:GQ:PL 0/1:5,5:11:62:62,0,97 chrVII 348161 . A T 56.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;DP=11;Dels=0.00;FS=6.154;HaplotypeScore=3.2482;MLEAC=1;MLEAF=0.500;MQ=42.94;MQ0=0;MQRankSum=-1.408;QD=5.09;ReadPosRankSum=-1.186;SB=-1.595e+01 GT:AD:DP:GQ:PL 0/1:6,5:11:86:86,0,94 chrVII 348923 . T G 2906 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.02;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,116:121:99:2939,312,0 chrVII 350521 . T A 2120 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2153,216,0 chrVII 351063 . T C 3609.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3609,376,0 chrVII 352599 . C T 3735.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.1199;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.64;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3735,390,0 chrVII 352669 . A G 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=155;Dels=0.00;FS=6.702;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.229;QD=23.45;ReadPosRankSum=2.385;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:2,151:155:99:3635,384,0 chrVII 353297 . G C 4462.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8174;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4462,466,0 chrVII 353777 . G A 2250 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2283,228,0 chrVII 353852 . G T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.71;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3366,345,0 chrVII 353915 . T C 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.303;QD=24.90;ReadPosRankSum=1.699;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2648,282,0 chrVII 353981 . C T 2790 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=25.60;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2823,283,0 chrVII 354128 . G T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.4183;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.75;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3239,322,0 chrVII 354145 . C T 3088 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.04;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3121,319,0 chrVII 354206 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.03;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2787,277,0 chrVII 354230 . G A 2784 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.82;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2817,291,0 chrVII 354275 . T C 2750 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.36;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2783,288,0 chrVII 354432 . C T 2144 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=17.43;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2177,219,0 chrVII 354732 . T C 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2023;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.724;QD=24.02;ReadPosRankSum=1.711;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3964,406,0 chrVII 354740 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.6901;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=22.80;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3807,382,0 chrVII 354828 . T C 4911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-0.595;QD=24.31;ReadPosRankSum=1.715;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4911,514,0 chrVII 354898 . A G 4319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.4889;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-0.964;QD=24.54;ReadPosRankSum=1.712;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4319,445,0 chrVII 355076 . A C 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=151;Dels=0.00;FS=2.880;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;MQRankSum=-0.659;QD=21.79;ReadPosRankSum=2.385;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3290,340,0 chrVII 355078 . T C 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=151;Dels=0.00;FS=7.575;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;MQRankSum=-1.450;QD=20.82;ReadPosRankSum=2.400;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3177,342,0 chrVII 355088 . T C 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=3.808;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;MQRankSum=-0.872;QD=18.47;ReadPosRankSum=1.709;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2785,294,0 chrVII 355098 . T C 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=158;Dels=0.00;FS=3.236;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-0.658;QD=17.75;ReadPosRankSum=1.710;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2837,300,0 chrVII 355292 . G A 4702.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=17.4317;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=24.88;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4702,472,0 chrVII 355706 . C T 3025 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.5134;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3058,318,0 chrVII 355780 . G C 4278.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.6938;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4278,451,0 chrVII 355928 . T C 5232.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.8969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5232,550,0 chrVII 356393 . A T 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=3.346;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-1.703;QD=25.74;ReadPosRankSum=1.646;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3148,313,0 chrVII 357041 . C T 1546 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.12;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1579,156,0 chrVII 357335 . A G 2755 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.52;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2788,303,0 chrVII 357841 . T C 5462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.713;DP=234;Dels=0.00;FS=2.575;HaplotypeScore=22.4230;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.554;QD=23.34;ReadPosRankSum=2.884;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:3,231:234:99:5462,583,0 chrVII 358124 . A G 637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-8.145;DP=189;Dels=0.05;FS=6.371;HaplotypeScore=246.9740;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.618;QD=3.37;ReadPosRankSum=-9.162;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:109,70:180:75:670,75,0 chrVII 358656 . C T 3718.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3718,376,0 chrVII 358861 . T G 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.089;QD=23.07;ReadPosRankSum=1.628;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3898,411,0 chrVII 359674 . C T 4250.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.97;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4250,424,0 chrVII 360498 . A G 4969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=210;Dels=0.00;FS=3.031;HaplotypeScore=8.9993;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.075;QD=23.66;ReadPosRankSum=2.391;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:4969,517,0 chrVII 360816 . C T 5183.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.33;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5183,538,0 chrVII 361541 . C T 3412.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7633;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.05;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3412,343,0 chrVII 361547 . A G 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=147;Dels=0.00;FS=5.846;HaplotypeScore=3.0498;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.555;QD=21.24;ReadPosRankSum=2.870;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3155,330,0 chrVII 361880 . A G 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.959;QD=20.45;ReadPosRankSum=1.665;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2139,222,0 chrVII 362066 . G A 1388 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.93;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1421,144,0 chrVII 362321 . A G 3551.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.92;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3551,375,0 chrVII 362516 . A T 4662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=20.1403;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.530;QD=24.54;ReadPosRankSum=0.504;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4662,490,0 chrVII 363302 . G C 6686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.012;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=20.5064;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.762;QD=23.46;ReadPosRankSum=1.548;SB=-3.544e+03 GT:AD:DP:GQ:PL 1/1:1,281:285:99:6686,699,0 chrVII 364120 . G C 1934 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.5861;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1967,204,0 chrVII 364650 . C G 2102 filter AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.7117;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=22;QD=17.37;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2135,225,0 chrVII 365023 . G A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.3033;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=24.50;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3749,393,0 chrVII 365076 . G A 4053.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=26.66;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4053,406,0 chrVII 365727 . A G 2439 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=25.95;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2472,255,0 chrVII 365991 . G A 3011 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=21.06;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3044,307,0 chrVII 365998 . G A 3106 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.71;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3139,324,0 chrVII 366235 . G A 2111 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.4869;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.76;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,94:97:99:2144,216,0 chrVII 366323 . C G 3270.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.59;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3270,337,0 chrVII 366762 . A G 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=3.647;HaplotypeScore=11.1503;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.367;QD=21.05;ReadPosRankSum=1.680;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2832,294,0 chrVII 367697 . T C 3048 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.81;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3081,315,0 chrVII 367741 . G A 2905 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2938,300,0 chrVII 367828 . G A 2955 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.4445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2988,301,0 chrVII 368346 . A C 4609.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.37;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4609,501,0 chrVII 368495 . T G 5787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=254;Dels=0.00;FS=3.761;HaplotypeScore=8.8123;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.811;QD=22.78;ReadPosRankSum=1.691;SB=-2.936e+03 GT:AD:DP:GQ:PL 1/1:1,251:253:99:5787,607,0 chrVII 368504 . G A 5215.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=23.08;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5215,550,0 chrVII 369167 . G A 4894.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=26.03;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4894,490,0 chrVII 369600 . A G 4144.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.23;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4144,433,0 chrVII 369666 . G T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.64;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4179,415,0 chrVII 369881 . C A 3083 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.69;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3116,313,0 chrVII 370360 . A G 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=171;Dels=0.00;FS=3.029;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.631;QD=24.04;ReadPosRankSum=2.292;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:4110,430,0 chrVII 370476 . A G 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=171;Dels=0.01;FS=3.036;HaplotypeScore=11.8432;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.388;QD=23.46;ReadPosRankSum=2.347;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:4011,418,0 chrVII 370641 . G T 3409.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.01;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3409,349,0 chrVII 370996 . T C 6590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=283;Dels=0.00;FS=10.764;HaplotypeScore=21.0185;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.320;QD=23.29;ReadPosRankSum=2.954;SB=-3.262e+03 GT:AD:DP:GQ:PL 1/1:3,280:283:99:6590,688,0 chrVII 371489 . T G 5228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=203;Dels=0.00;FS=3.029;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.490;QD=25.75;ReadPosRankSum=2.377;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:5228,538,0 chrVII 372033 . G C 4769.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4769,510,0 chrVII 372223 . T G 5452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=247;Dels=0.00;FS=7.622;HaplotypeScore=11.9349;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.323;QD=22.07;ReadPosRankSum=2.390;SB=-2.869e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:5452,568,0 chrVII 372417 . G A 6736.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=19.6868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.42;SB=-2.965e+03 GT:AD:DP:GQ:PL 1/1:0,252:255:99:6736,676,0 chrVII 372717 . G A 5581.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.4522;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5581,559,0 chrVII 373624 . C T 4500.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4500,454,0 chrVII 373713 . T C 4250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=192;Dels=0.00;FS=2.847;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.979;QD=22.14;ReadPosRankSum=2.360;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4250,445,0 chrVII 374242 . T C 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.199;QD=23.89;ReadPosRankSum=1.675;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2972,309,0 chrVII 374567 . T C 5020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.416;DP=200;Dels=0.00;FS=8.109;HaplotypeScore=2.6392;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.118;QD=25.10;ReadPosRankSum=3.259;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:4,196:200:99:5020,523,0 chrVII 374582 . T C 4322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.693;QD=23.75;ReadPosRankSum=1.713;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:4322,454,0 chrVII 374642 . A G 3857.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.91;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3857,417,0 chrVII 375494 . G T 5517.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.3317;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.30;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5517,574,0 chrVII 375808 . A G 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;MQRankSum=0.192;QD=21.72;ReadPosRankSum=1.673;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2618,285,0 chrVII 376112 . T A 3902.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.7909;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=25.84;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3902,391,0 chrVII 377199 . A G 3451.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.2295;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.56;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3451,369,0 chrVII 377576 . C T 1922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.516;DP=174;Dels=0.00;FS=4.604;HaplotypeScore=41.8242;MLEAC=2;MLEAF=1.00;MQ=41.77;MQ0=0;MQRankSum=6.136;QD=11.05;ReadPosRankSum=3.971;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:84,90:174:91:1955,91,0 chrVII 377602 . A C 344.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.060;DP=141;Dels=0.00;FS=4.873;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=37.27;MQ0=0;MQRankSum=-3.168;QD=2.44;ReadPosRankSum=-8.665;SB=-2.280e+02 GT:AD:DP:GQ:PL 0/1:108,33:141:99:374,0,604 chrVII 378078 . C A 5173.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=8.8671;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.13;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:5173,520,0 chrVII 379743 . A G 1996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.299;QD=22.68;ReadPosRankSum=1.693;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2029,216,0 chrVII 380368 . T C 2597 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2630,273,0 chrVII 380428 . A G 3020 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3053,315,0 chrVII 380670 . A T 5032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=206;Dels=0.00;FS=12.099;HaplotypeScore=17.7501;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.166;QD=24.43;ReadPosRankSum=2.917;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:3,203:206:99:5032,505,0 chrVII 380992 . T C 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=130;Dels=0.00;FS=10.092;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.305;QD=24.24;ReadPosRankSum=2.930;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:3184,333,0 chrVII 381497 . A G 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=164;Dels=0.00;FS=3.035;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-1.752;QD=21.75;ReadPosRankSum=2.419;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:2,160:164:99:3567,378,0 chrVII 381517 . C G 3822.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.75;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3822,400,0 chrVII 383573 . G T 6932.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=13.5381;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.66;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:6932,709,0 chrVII 384239 . T C 7343.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=13.1746;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.16;SB=-3.356e+03 GT:AD:DP:GQ:PL 1/1:0,313:317:99:7343,757,0 chrVII 385041 . A C 4927.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.0641;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=22.92;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4927,520,0 chrVII 385519 . T C 2376 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.055;DP=176;Dels=0.00;FS=21.428;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=34.87;MQ0=1;MQRankSum=4.588;QD=13.50;ReadPosRankSum=-1.167;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:11,164:176:84:2409,84,0 chrVII 385522 . G T 2125 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.716;DP=168;Dels=0.00;FS=22.087;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.63;MQ0=2;MQRankSum=4.551;QD=12.65;ReadPosRankSum=-1.748;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:11,157:168:30:2158,30,0 chrVII 385525 . A G 1868.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.378;DP=158;Dels=0.00;FS=16.252;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.60;MQ0=2;MQRankSum=3.752;QD=11.82;ReadPosRankSum=-1.440;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:13,145:158:3:1898,3,0 chrVII 385531 . C T 1839.41 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.872;DP=155;Dels=0.00;FS=28.030;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=2;MQRankSum=4.403;QD=11.87;ReadPosRankSum=-3.377;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:12,143:155:13:1872,13,0 chrVII 385534 . C T 1634.11 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.684;DP=152;Dels=0.00;FS=28.549;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.87;MQ0=2;MQRankSum=4.411;QD=10.75;ReadPosRankSum=-3.703;SB=-1.073e+03 GT:AD:DP:GQ:PL 0/1:12,140:152:13:1664,0,13 chrVII 385540 . A G 1544.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;DP=132;Dels=0.00;FS=32.670;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=28.44;MQ0=2;MQRankSum=4.198;QD=11.70;ReadPosRankSum=-3.447;SB=-6.620e+02 GT:AD:DP:GQ:PL 0/1:12,120:132:28:1574,0,28 chrVII 385542 . T C 1475.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;DP=134;Dels=0.00;FS=33.798;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=28.59;MQ0=2;MQRankSum=3.085;QD=11.01;ReadPosRankSum=-1.726;SB=-6.680e+02 GT:AD:DP:GQ:PL 0/1:15,119:134:30:1505,0,30 chrVII 385555 . C A 1455.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.848;DP=130;Dels=0.00;FS=34.404;HaplotypeScore=2.5885;MLEAC=1;MLEAF=0.500;MQ=33.04;MQ0=2;MQRankSum=4.265;QD=11.19;ReadPosRankSum=-1.490;SB=-4.780e+02 GT:AD:DP:GQ:PL 0/1:12,117:130:38:1485,0,38 chrVII 385570 . T C 1980.41 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.160;DP=145;Dels=0.00;FS=37.539;HaplotypeScore=13.3879;MLEAC=2;MLEAF=1.00;MQ=37.25;MQ0=1;MQRankSum=3.123;QD=13.66;ReadPosRankSum=2.530;SB=-7.234e+02 GT:AD:DP:GQ:PL 1/1:14,131:145:13:2013,13,0 chrVII 386539 . T C 4116.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=244;Dels=0.00;FS=3.674;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=3;MQRankSum=0.130;QD=16.87;ReadPosRankSum=1.718;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:4,239:244:99:4116,427,0 chrVII 386548 . C A 3519.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=236;Dels=0.00;FS=3.503;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=30.74;MQ0=3;MQRankSum=-1.539;QD=14.91;ReadPosRankSum=1.420;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:4,232:236:99:3519,402,0 chrVII 386549 . A C 3559.01 SnpCluster AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=30.55;MQ0=3;QD=15.14;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:3,232:235:99:3559,408,0 chrVII 386557 . A C 3749.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=251;Dels=0.00;FS=6.004;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=29.04;MQ0=3;MQRankSum=0.794;QD=14.94;ReadPosRankSum=2.972;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:3,245:251:99:3749,388,0 chrVII 386563 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=255;Dels=0.00;FS=3.115;HaplotypeScore=2.6132;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=3;MQRankSum=-0.234;QD=13.47;ReadPosRankSum=1.718;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:4,251:255:99:3434,378,0 chrVII 386581 . G A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=3;QD=14.51;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:3,244:247:99:3583,370,0 chrVII 386593 . C T 3385.01 SnpCluster AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=2;QD=13.76;SB=-3.088e+03 GT:AD:DP:GQ:PL 1/1:2,244:246:99:3385,349,0 chrVII 386596 . C T 3288.01 SnpCluster AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=2;QD=13.53;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:2,241:243:99:3288,357,0 chrVII 386599 . C T 3654.01 SnpCluster AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.25;MQ0=2;QD=14.50;SB=-3.304e+03 GT:AD:DP:GQ:PL 1/1:2,250:252:99:3654,367,0 chrVII 386608 . G A 3955.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=6.6118;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=2;QD=14.76;SB=-3.373e+03 GT:AD:DP:GQ:PL 1/1:2,265:268:99:3955,412,0 chrVII 386978 . C G 4338.01 filter AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=11;QD=16.43;SB=-3.098e+03 GT:AD:DP:GQ:PL 1/1:0,258:264:99:4338,468,0 chrVII 386979 . G C 4473.01 filter AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=11;QD=16.94;SB=-3.177e+03 GT:AD:DP:GQ:PL 1/1:0,260:264:99:4473,478,0 chrVII 387977 . T C 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.6442;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.373;QD=23.58;ReadPosRankSum=1.666;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3726,393,0 chrVII 389105 . G A 4454.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4454,442,0 chrVII 390472 . C G 4375.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.44;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4375,457,0 chrVII 390484 . A T 3956.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.60;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3956,415,0 chrVII 390921 . T C 3737.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.75;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3737,393,0 chrVII 391138 . G T 4186.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.68;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4186,424,0 chrVII 391186 . T C 3327.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.2947;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.94;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3327,357,0 chrVII 391249 . G A 4537.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4537,460,0 chrVII 391279 . A G 4557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=201;Dels=0.00;FS=6.963;HaplotypeScore=14.2915;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.841;QD=22.67;ReadPosRankSum=2.425;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4557,475,0 chrVII 392315 . T C 5393.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.20;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:5393,577,0 chrVII 392417 . A G 4856.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.90;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4856,508,0 chrVII 394511 . T A 1938 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.8370;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=11.40;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,170:170:99:1971,201,0 chrVII 395106 . T A 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.057;QD=26.06;ReadPosRankSum=1.704;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3212,319,0 chrVII 395241 . C G 4259.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4259,439,0 chrVII 395359 . C T 4549.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.6853;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4549,460,0 chrVII 395734 . T C 1984 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=18.72;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2017,219,0 chrVII 395752 . G C 1826 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=18.44;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1859,198,0 chrVII 395788 . A G 1995 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.95;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2028,213,0 chrVII 395803 . G A 1967 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.49;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2000,207,0 chrVII 395815 . A G 1739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.717;QD=18.90;ReadPosRankSum=2.396;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:2,89:92:99:1772,186,0 chrVII 395869 . G A 1920 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=19.01;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1953,198,0 chrVII 395882 . C T 1698 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=18.26;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1731,174,0 chrVII 396018 . T C 2901 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=25.45;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2934,306,0 chrVII 396062 . T C 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-1.466;QD=24.36;ReadPosRankSum=1.705;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3200,342,0 chrVII 396092 . C T 2181 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=23.71;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:2214,219,0 chrVII 396110 . A G 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=4.539;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=1.504;QD=22.99;ReadPosRankSum=1.656;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2125,222,0 chrVII 396170 . T C 2732 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=23.76;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2765,288,0 chrVII 396232 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.70;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3559,372,0 chrVII 396235 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.85;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3561,358,0 chrVII 396269 . A G 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.618;DP=130;Dels=0.00;FS=7.903;HaplotypeScore=16.1368;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.738;QD=18.49;ReadPosRankSum=3.776;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:5,124:130:99:2437,261,0 chrVII 396575 . T C 4624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=211;Dels=0.00;FS=4.854;HaplotypeScore=7.5961;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-1.551;QD=21.91;ReadPosRankSum=1.716;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4624,487,0 chrVII 396581 . C T 4753.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.7035;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.63;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4753,475,0 chrVII 397448 . T A 6660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=258;Dels=0.00;FS=6.741;HaplotypeScore=12.7967;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.413;QD=25.81;ReadPosRankSum=2.383;SB=-3.424e+03 GT:AD:DP:GQ:PL 1/1:2,256:258:99:6660,667,0 chrVII 398081 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.4047;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.75;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3263,351,0 chrVII 398572 . G A 4176.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:4176,421,0 chrVII 399014 . T C 4473.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.94;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4473,480,0 chrVII 399032 . G A 4521.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.8999;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.07;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,191:196:99:4521,483,0 chrVII 399178 . G C 6218.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=22.5239;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.45;SB=-3.342e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:6218,655,0 chrVII 399494 . T C 5745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.191;QD=22.44;ReadPosRankSum=1.664;SB=-3.004e+03 GT:AD:DP:GQ:PL 1/1:1,255:256:99:5745,604,0 chrVII 399537 . T A 6340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=283;Dels=0.00;FS=2.921;HaplotypeScore=21.6028;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.117;QD=22.40;ReadPosRankSum=2.397;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:2,280:283:99:6340,643,0 chrVII 400162 . T C 2480 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.76;MQ0=0;QD=23.62;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2513,267,0 chrVII 400387 . A G 288 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:33:321,33,0 chrVII 400432 . A G 392 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,16:17:45:425,45,0 chrVII 401117 . A G 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=128;Dels=0.00;FS=5.051;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.785;QD=23.43;ReadPosRankSum=1.028;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3032,312,0 chrVII 401617 . G T 954 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=21.20;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:987,99,0 chrVII 401621 . T G 660 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=17.84;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:75:693,75,0 chrVII 401909 . G T 121.13 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.18;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,29:29:18:154,18,0 chrVII 401919 . G A 223.01 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=7.96;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:27:256,27,0 chrVII 402248 . C A 87.51 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.75;MQ0=4;QD=4.61;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:12:120,12,0 chrVII 402365 . G A 189.03 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.41;MQ0=1;QD=15.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:24:222,24,0 chrVII 402373 . C T 167.06 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=16.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:21:200,21,0 chrVII 402383 . A T 168.06 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.92;MQ0=0;QD=18.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:21:201,21,0 chrVII 402387 . C G 166.06 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.33;MQ0=0;QD=18.45;SB=-2.194e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:21:199,21,0 chrVII 402407 . A G 69.51 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.30;MQ0=0;QD=13.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:12:102,12,0 chrVII 402408 . C G 69.51 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.30;MQ0=0;QD=13.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:12:102,12,0 chrVII 402421 . T A 126.13 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=0;QD=15.77;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:18:159,18,0 chrVII 402469 . G A 370 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=20.56;SB=-6.998e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:42:403,42,0 chrVII 402508 . A T 263 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=1;QD=15.47;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:30:296,30,0 chrVII 403664 . A G 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=12.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:57,6,0 chrVII 403685 . T C 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=12.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:56,6,0 chrVII 403686 . C T 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=13.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:58,6,0 chrVII 403700 . T C 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=13.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:58,6,0 chrVII 403770 . T C 160.06 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.68;MQ0=1;QD=13.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:21:193,21,0 chrVII 404129 . A G 157.06 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.10;MQ0=18;QD=5.61;SB=-1.086e+02 GT:AD:DP:GQ:PL 1/1:0,27:28:21:190,21,0 chrVII 404138 . G A 28.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.93;MQ0=19;QD=1.07;SB=-2.926e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:6:60,6,0 chrVII 405406 . A G 77.51 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=62.6397;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=1;QD=0.82;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,94:95:12:110,12,0 chrVII 405409 . G T 67.51 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=62.6971;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.72;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,94:94:12:100,12,0 chrVII 405414 . A T 62.51 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.99;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,63:63:12:95,12,0 chrVII 405432 . C T 407 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.18;MQ0=0;QD=4.03;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,101:101:45:440,45,0 chrVII 405433 . T A 393 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.18;MQ0=0;QD=3.89;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,101:101:45:426,45,0 chrVII 405437 . G C 405 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=0;QD=3.82;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,106:106:45:438,45,0 chrVII 405448 . T A 674 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=98.3462;MLEAC=2;MLEAF=1.00;MQ=31.81;MQ0=0;QD=6.36;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:75:707,75,0 chrVII 405567 . G T 4283.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.7118;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=24.34;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4283,427,0 chrVII 405802 . A G 5880.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=13.7611;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.24;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5880,622,0 chrVII 405892 . T C 6966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=283;Dels=0.00;FS=2.942;HaplotypeScore=13.1934;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.306;QD=24.61;ReadPosRankSum=2.406;SB=-3.273e+03 GT:AD:DP:GQ:PL 1/1:2,279:283:99:6966,733,0 chrVII 406503 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2771,279,0 chrVII 407307 . A G 4284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.559;QD=22.91;ReadPosRankSum=1.695;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4284,445,0 chrVII 407376 . T C 4642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=208;Dels=0.00;FS=3.694;HaplotypeScore=17.3027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.471;QD=22.32;ReadPosRankSum=1.698;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:4642,501,0 chrVII 407454 . G A 4868.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=21.6359;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.52;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4868,490,0 chrVII 408003 . C T 3732.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0339;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.92;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3732,379,0 chrVII 408316 . T C 5459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=13.9388;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.688;QD=23.03;ReadPosRankSum=1.717;SB=-2.842e+03 GT:AD:DP:GQ:PL 1/1:1,233:237:99:5459,588,0 chrVII 408708 . G A 3149 SnpCluster AC=2;AF=1.00;AN=2;DP=181;Dels=0.01;FS=0.000;HaplotypeScore=6.3805;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=17.40;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3182,342,0 chrVII 408709 . A C 3103 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.1692;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;MQRankSum=0.937;QD=17.53;ReadPosRankSum=1.349;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:3,173:177:99:3136,336,0 chrVII 408716 . C G 3304.01 SnpCluster AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5061;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=18.56;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3304,345,0 chrVII 408767 . G A 3895.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.5629;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=20.39;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3895,388,0 chrVII 408864 . G A 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.454;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.770;QD=22.10;ReadPosRankSum=-0.470;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3603,348,0 chrVII 408942 . C T 3408.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=26.02;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3408,343,0 chrVII 409654 . G A 3763.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.0837;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3763,382,0 chrVII 409886 . C G 4090.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=25.25;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4090,427,0 chrVII 409966 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.660;QD=24.55;ReadPosRankSum=1.684;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3560,378,0 chrVII 410080 . G A 5456.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=17.7169;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.14;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5456,544,0 chrVII 410159 . G A 4009.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.2689;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.31;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4009,409,0 chrVII 410219 . G A 4814.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.95;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4814,487,0 chrVII 410294 . A G 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=153;Dels=0.00;FS=5.371;HaplotypeScore=12.1062;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.353;QD=22.02;ReadPosRankSum=2.887;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:3,148:153:99:3369,351,0 chrVII 410420 . C T 3452.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.01;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3452,349,0 chrVII 410453 . T C 4100.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.85;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4100,430,0 chrVII 410531 . G A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.8352;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.37;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4160,442,0 chrVII 411461 . A G 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=165;Dels=0.00;FS=2.783;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.172;QD=25.20;ReadPosRankSum=2.420;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:4158,438,0 chrVII 411573 . G A 4793.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=19.9085;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.78;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4793,478,0 chrVII 411864 . A C 4645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=22.1765;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.664;QD=22.22;ReadPosRankSum=1.698;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:1,204:209:99:4645,501,0 chrVII 412277 . C T 2481 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=114.0798;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.11;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2514,264,0 chrVII 412400 . C T 2386 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=22.72;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2419,246,0 chrVII 412413 . A T 2181 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=22.72;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2214,219,0 chrVII 412477 . C T 1654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.258;DP=74;Dels=0.00;FS=7.494;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=-0.024;QD=22.35;ReadPosRankSum=-0.783;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1687,147,0 chrVII 412619 . A C 1092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;MQRankSum=0.885;QD=18.20;ReadPosRankSum=2.368;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1125,123,0 chrVII 412625 . T C 858 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=27.6882;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;QD=17.87;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,45:48:99:891,99,0 chrVII 412672 . T C 1776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-1.124;QD=24.00;ReadPosRankSum=1.685;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1809,189,0 chrVII 412771 . G C 3708.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.57;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3708,396,0 chrVII 412810 . A G 3280.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.8145;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=23.94;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3280,351,0 chrVII 412828 . C T 3081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.0421;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.240;QD=23.34;ReadPosRankSum=0.346;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:1,129:132:99:3114,302,0 chrVII 412864 . T A 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=144;Dels=0.00;FS=2.580;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=-0.112;QD=19.71;ReadPosRankSum=2.574;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:2871,300,0 chrVII 412886 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=153.6748;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=17.62;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3082,309,0 chrVII 413016 . T C 4721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.346;DP=227;Dels=0.00;FS=7.411;HaplotypeScore=10.3563;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.059;QD=20.80;ReadPosRankSum=1.855;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:2,225:227:99:4721,477,0 chrVII 413051 . T C 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=160;Dels=0.00;FS=9.710;HaplotypeScore=14.3234;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.210;QD=19.57;ReadPosRankSum=2.372;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3164,333,0 chrVII 413440 . C T 5668.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.85;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5668,565,0 chrVII 413728 . C G 2554 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.4543;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;QD=19.65;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2587,267,0 chrVII 413738 . T C 2085 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=81.0313;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=17.52;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2118,225,0 chrVII 413797 . C T 1884 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=16.10;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1917,192,0 chrVII 414263 . A T 6009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=0.006;QD=20.44;ReadPosRankSum=1.697;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:1,293:294:99:6009,640,0 chrVII 414265 . G A 6290.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=21.25;SB=-3.044e+03 GT:AD:DP:GQ:PL 1/1:0,295:296:99:6290,643,0 chrVII 414479 . C T 4786.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.05;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4786,499,0 chrVII 414527 . C T 5507.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=25.03;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5507,556,0 chrVII 414653 . G A 4551.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.0860;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.73;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4551,460,0 chrVII 414724 . C T 4083.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.74;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4083,409,0 chrVII 414752 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=173;Dels=0.00;FS=6.788;HaplotypeScore=11.5547;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.493;QD=20.43;ReadPosRankSum=2.421;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3535,373,0 chrVII 415307 . G A 3512.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3512,358,0 chrVII 415592 . A G 4978.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.40;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4978,534,0 chrVII 415922 . T C 4296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=180;Dels=0.00;FS=4.624;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.414;QD=23.87;ReadPosRankSum=1.672;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,174:180:99:4296,454,0 chrVII 416947 . T C 4403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=206;Dels=0.00;FS=3.645;HaplotypeScore=7.2523;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.891;QD=21.37;ReadPosRankSum=1.715;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4403,471,0 chrVII 416956 . G A 4566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.2780;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-0.812;QD=22.06;ReadPosRankSum=0.109;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4566,463,0 chrVII 417308 . A G 3760.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3760,391,0 chrVII 417363 . G A 4039.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.78;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4039,427,0 chrVII 417671 . A G 5121.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=17.9319;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.23;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:5121,526,0 chrVII 418253 . G A 4940.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=17.5012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4940,493,0 chrVII 418292 . A T 4890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.520;QD=24.95;ReadPosRankSum=1.661;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4890,487,0 chrVII 418502 . A G 3053 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.85;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3086,327,0 chrVII 420037 . C T 6145.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=18.5487;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.82;SB=-3.665e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:6145,616,0 chrVII 420882 . C T 3937.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.7136;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3937,406,0 chrVII 422034 . A G 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.0875;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.516;QD=21.97;ReadPosRankSum=1.709;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3339,363,0 chrVII 422386 . C T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.48;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3599,358,0 chrVII 422434 . A G 2294 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.5310;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.35;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2327,258,0 chrVII 423140 . A C 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.241;DP=137;Dels=0.00;FS=3.637;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=38.39;MQ0=3;MQRankSum=1.706;QD=19.10;ReadPosRankSum=0.646;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:4,133:137:99:2650,252,0 chrVII 423143 . G A 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.399;DP=142;Dels=0.00;FS=3.522;HaplotypeScore=4.9337;MLEAC=2;MLEAF=1.00;MQ=39.15;MQ0=3;MQRankSum=1.706;QD=19.42;ReadPosRankSum=0.423;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:4,134:142:99:2790,261,0 chrVII 425446 . A C 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=113;Dels=0.00;FS=6.010;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.355;QD=22.38;ReadPosRankSum=2.900;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:3,108:113:99:2562,273,0 chrVII 427600 . A G 6217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=19.6076;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.924;QD=22.77;ReadPosRankSum=1.668;SB=-3.386e+03 GT:AD:DP:GQ:PL 1/1:1,270:273:99:6217,658,0 chrVII 428542 . C G 2906 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2575;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.42;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2939,303,0 chrVII 428698 . A T 4292.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4292,427,0 chrVII 429467 . A T 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=3.203;HaplotypeScore=11.3889;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.549;QD=22.80;ReadPosRankSum=1.711;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3670,367,0 chrVII 429706 . A C 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=173;Dels=0.00;FS=2.988;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.664;QD=23.99;ReadPosRankSum=2.421;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:4150,433,0 chrVII 429811 . T C 4504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=188;Dels=0.00;FS=4.026;HaplotypeScore=11.7190;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.010;QD=23.96;ReadPosRankSum=1.695;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4504,469,0 chrVII 430559 . A G 2953 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.61;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2986,327,0 chrVII 430592 . A C 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=6.668;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.187;QD=26.46;ReadPosRankSum=1.705;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3466,361,0 chrVII 430810 . T C 7965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.783;DP=314;Dels=0.00;FS=7.523;HaplotypeScore=22.1906;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-2.294;QD=25.37;ReadPosRankSum=3.828;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:5,308:314:99:7965,826,0 chrVII 431116 . T C 4668.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=17.2738;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.38;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:4668,490,0 chrVII 431481 . G A 125.13 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=13.90;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,8:9:18:158,18,0 chrVII 431867 . A G 5267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=241;Dels=0.00;FS=3.526;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.208;QD=21.85;ReadPosRankSum=1.703;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5267,544,0 chrVII 431877 . G C 5184.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=8.6952;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.42;SB=-2.882e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5184,550,0 chrVII 433234 . A G 934 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=16.98;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:967,105,0 chrVII 433461 . A T 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=6.185;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=1.059;QD=20.99;ReadPosRankSum=1.636;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2300,234,0 chrVII 433475 . T C 2099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.272;DP=124;Dels=0.00;FS=5.020;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.606;QD=16.93;ReadPosRankSum=3.315;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:4,119:124:99:2132,225,0 chrVII 433556 . C T 3388.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.62;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3388,354,0 chrVII 433742 . C T 1972 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.12;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2005,213,0 chrVII 433844 . T C 1521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.411;DP=99;Dels=0.00;FS=3.740;HaplotypeScore=56.2056;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-0.625;QD=15.36;ReadPosRankSum=1.696;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,96:99:99:1554,165,0 chrVII 435054 . A G 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=6.142;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.214;QD=23.19;ReadPosRankSum=2.405;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2561,279,0 chrVII 435937 . A G 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=6.522;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.285;QD=26.72;ReadPosRankSum=2.401;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:4088,424,0 chrVII 436038 . C T 4029.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=25.83;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4029,406,0 chrVII 436063 . A T 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.850;QD=24.10;ReadPosRankSum=1.711;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3880,411,0 chrVII 436337 . G A 1512 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.30;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1545,162,0 chrVII 440693 . T A 1417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.185;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.302;QD=25.30;ReadPosRankSum=2.362;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1450,153,0 chrVII 440972 . A T 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.035;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.6248;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.030;QD=0.43;ReadPosRankSum=2.995;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:4,84:88:9:70,9,0 chrVII 440974 . T A 27.23 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.825;DP=90;Dels=0.00;FS=3.887;HaplotypeScore=8.2907;MLEAC=1;MLEAF=0.500;MQ=56.55;MQ0=0;MQRankSum=0.590;QD=0.30;ReadPosRankSum=3.631;SB=-8.792e+02 GT:AD:DP:GQ:PL 0/1:6,84:90:10:57,0,10 chrVII 441122 . T C 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.606;QD=23.79;ReadPosRankSum=1.638;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2650,276,0 chrVII 442175 . A C 6276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.761;DP=299;Dels=0.00;FS=4.606;HaplotypeScore=8.1335;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-2.093;QD=20.99;ReadPosRankSum=2.629;SB=-3.685e+03 GT:AD:DP:GQ:PL 1/1:4,295:299:99:6276,655,0 chrVII 442184 . A G 5849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=287;Dels=0.00;FS=2.149;HaplotypeScore=19.1041;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-1.616;QD=20.38;ReadPosRankSum=2.497;SB=-3.713e+03 GT:AD:DP:GQ:PL 1/1:3,282:287:99:5849,586,0 chrVII 442187 . A C 5376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.918;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=26.2187;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-2.075;QD=18.86;ReadPosRankSum=1.401;SB=-3.600e+03 GT:AD:DP:GQ:PL 1/1:3,280:285:99:5376,539,0 chrVII 442299 . C G 8010.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=26.6510;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.77;SB=-3.606e+03 GT:AD:DP:GQ:PL 1/1:0,335:337:99:8010,841,0 chrVII 442339 . A G 8354.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=372;Dels=0.00;FS=8.048;HaplotypeScore=20.2473;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.043;QD=22.46;ReadPosRankSum=2.423;SB=-3.985e+03 GT:AD:DP:GQ:PL 1/1:2,367:372:99:8354,916,0 chrVII 442503 . G T 8265.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=16.7122;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.45;SB=-3.945e+03 GT:AD:DP:GQ:PL 1/1:0,338:338:99:8265,868,0 chrVII 442935 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.6225;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.74;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3300,348,0 chrVII 442968 . A T 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=3.047;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.092;QD=25.92;ReadPosRankSum=1.674;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3117,319,0 chrVII 443007 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.56;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2740,291,0 chrVII 443972 . G A 5025.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=16.4963;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.51;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5025,511,0 chrVII 444466 . T C 5366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=260;Dels=0.00;FS=4.170;HaplotypeScore=18.8624;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.055;QD=20.64;ReadPosRankSum=1.719;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:1,255:260:99:5366,562,0 chrVII 446205 . G A 4609.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.89;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4609,460,0 chrVII 448106 . T C 6445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=277;Dels=0.00;FS=3.022;HaplotypeScore=14.3017;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.134;QD=23.27;ReadPosRankSum=2.370;SB=-3.553e+03 GT:AD:DP:GQ:PL 1/1:2,274:277:99:6445,682,0 chrVII 448929 . A G 3124 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.3521;MLEAC=2;MLEAF=1.00;MQ=43.79;MQ0=0;QD=13.18;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,234:237:99:3157,333,0 chrVII 449133 . C T 12777.01 filter AC=2;AF=1.00;AN=2;DP=495;Dels=0.00;FS=0.000;HaplotypeScore=12.9002;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=25.81;SB=-4.790e+03 GT:AD:DP:GQ:PL 1/1:0,492:495:99:12777,1289,0 chrVII 449184 . T G 9320.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=413;Dels=0.00;FS=2.864;HaplotypeScore=26.4612;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-0.401;QD=22.57;ReadPosRankSum=2.366;SB=-4.636e+03 GT:AD:DP:GQ:PL 1/1:2,411:413:99:9320,1026,0 chrVII 449268 . C A 1155.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.647;DP=662;Dels=0.00;FS=68.868;HaplotypeScore=42.1724;MLEAC=1;MLEAF=0.500;MQ=41.68;MQ0=0;MQRankSum=-3.665;QD=1.74;ReadPosRankSum=-14.642;SB=-1.854e+03 GT:AD:DP:GQ:PL 0/1:316,346:662:99:1185,0,4166 chrVII 449280 . A C 2934.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-12.147;DP=667;Dels=0.00;FS=70.373;HaplotypeScore=50.5017;MLEAC=1;MLEAF=0.500;MQ=41.60;MQ0=0;MQRankSum=-6.525;QD=4.40;ReadPosRankSum=-16.032;SB=-2.139e+03 GT:AD:DP:GQ:PL 0/1:404,263:667:99:2964,0,2530 chrVII 449305 . T G 5119.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=446;Dels=0.00;FS=0.000;HaplotypeScore=10.2453;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;MQRankSum=-1.061;QD=11.48;ReadPosRankSum=2.031;SB=-3.920e+03 GT:AD:DP:GQ:PL 1/1:3,443:446:99:5119,541,0 chrVII 449525 . C T 4001.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=18.19;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4001,432,0 chrVII 449549 . T C 4064.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=17.90;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,223:227:99:4064,429,0 chrVII 449586 . A G 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=0.437;QD=16.60;ReadPosRankSum=1.698;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:3420,357,0 chrVII 449589 . A G 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=202;Dels=0.00;FS=5.270;HaplotypeScore=4.8094;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=-1.327;QD=16.56;ReadPosRankSum=2.895;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:3,197:202:99:3346,354,0 chrVII 449637 . C T 5339.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=19.3280;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.44;SB=-3.343e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:5339,544,0 chrVII 449763 . A G 4253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=208;Dels=0.00;FS=4.372;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-1.099;QD=20.45;ReadPosRankSum=1.682;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4253,468,0 chrVII 449769 . C T 4472.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=20.14;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4472,454,0 chrVII 449774 . A G 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=213;Dels=0.00;FS=9.627;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;MQRankSum=1.057;QD=18.77;ReadPosRankSum=2.355;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:2,206:213:99:3997,417,0 chrVII 449829 . C T 5393.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=9.7166;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=20.20;SB=-3.145e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:5393,571,0 chrVII 449895 . G A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.5451;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.69;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3662,373,0 chrVII 450372 . C G 7160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=14.5708;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.237;QD=23.10;ReadPosRankSum=1.620;SB=-3.911e+03 GT:AD:DP:GQ:PL 1/1:1,308:310:99:7160,754,0 chrVII 450587 . G A 5709.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=25.9611;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.82;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,287:288:99:5709,580,0 chrVII 450770 . A G 5640.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=16.7929;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.31;SB=-2.844e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5640,598,0 chrVII 451307 . A G 5578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=243;Dels=0.00;FS=4.899;HaplotypeScore=11.1127;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.387;QD=22.95;ReadPosRankSum=1.675;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:1,240:243:99:5578,592,0 chrVII 451905 . G A 8464.01 filter AC=2;AF=1.00;AN=2;DP=414;Dels=0.00;FS=0.000;HaplotypeScore=19.8683;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=20.44;SB=-3.971e+03 GT:AD:DP:GQ:PL 1/1:0,414:414:99:8464,904,0 chrVII 451921 . T C 7863.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.360;DP=408;Dels=0.00;FS=5.209;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=0.356;QD=19.27;ReadPosRankSum=3.356;SB=-4.174e+03 GT:AD:DP:GQ:PL 1/1:4,404:408:99:7863,811,0 chrVII 451937 . C T 8059.01 filter AC=2;AF=1.00;AN=2;DP=412;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=19.56;SB=-4.230e+03 GT:AD:DP:GQ:PL 1/1:0,412:412:99:8059,805,0 chrVII 451955 . G T 7682.01 filter AC=2;AF=1.00;AN=2;DP=419;Dels=0.00;FS=0.000;HaplotypeScore=13.4923;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=18.33;SB=-4.190e+03 GT:AD:DP:GQ:PL 1/1:0,419:419:99:7682,781,0 chrVII 452296 . A C 7465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=14.7839;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.375;QD=22.28;ReadPosRankSum=1.711;SB=-3.985e+03 GT:AD:DP:GQ:PL 1/1:2,329:335:99:7465,793,0 chrVII 452571 . A G 5639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=237;Dels=0.00;FS=2.972;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.714;QD=23.79;ReadPosRankSum=2.429;SB=-2.934e+03 GT:AD:DP:GQ:PL 1/1:2,235:237:99:5639,583,0 chrVII 452796 . C T 4350.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.58;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4350,436,0 chrVII 453554 . A G 5747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=261;Dels=0.00;FS=7.815;HaplotypeScore=24.1727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.237;QD=22.02;ReadPosRankSum=2.421;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:2,254:261:99:5747,589,0 chrVII 454664 . C A 750 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:81:783,81,0 chrVII 454799 . T C 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2707;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.759;QD=25.41;ReadPosRankSum=2.874;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:3,85:88:99:2269,234,0 chrVII 454822 . C T 2823 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.76;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2856,297,0 chrVII 454850 . A C 2424 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.87;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2457,261,0 chrVII 455013 . G A 3824.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.05;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3824,397,0 chrVII 455558 . G C 3845.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.24;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:3845,403,0 chrVII 455625 . A G 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.6294;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.197;QD=23.16;ReadPosRankSum=1.628;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3891,406,0 chrVII 455699 . G A 4358.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4358,436,0 chrVII 455815 . T C 4698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.285;QD=25.12;ReadPosRankSum=1.713;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4698,490,0 chrVII 456180 . T C 4133.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4133,435,0 chrVII 456426 . C T 3351.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.60;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3351,334,0 chrVII 456674 . C T 3053 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3086,318,0 chrVII 456812 . G A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6476;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=27.58;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3503,343,0 chrVII 457022 . G A 2206 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.47;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2239,228,0 chrVII 457145 . G A 1503 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.78;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1536,159,0 chrVII 457220 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=29.12;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3844,391,0 chrVII 457447 . C T 5637.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.3048;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.94;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5637,601,0 chrVII 457592 . A G 3650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.289;DP=166;Dels=0.00;FS=4.918;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=-1.253;QD=21.99;ReadPosRankSum=3.406;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:4,160:166:99:3650,387,0 chrVII 457631 . T C 4028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=190;Dels=0.00;FS=8.227;HaplotypeScore=11.0298;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.144;QD=21.20;ReadPosRankSum=2.398;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4028,415,0 chrVII 457688 . C G 4983.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.3790;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.67;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4983,517,0 chrVII 457721 . G A 4111.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.18;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4111,415,0 chrVII 458281 . C T 5550.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=12.2789;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.03;SB=-2.936e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5550,562,0 chrVII 458368 . G A 7420.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.41;SB=-3.607e+03 GT:AD:DP:GQ:PL 1/1:0,304:304:99:7420,784,0 chrVII 458995 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.7933;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.97;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2950,295,0 chrVII 459164 . C T 5497.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.4261;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=26.56;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5497,565,0 chrVII 459352 . G A 7300.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=22.19;SB=-4.206e+03 GT:AD:DP:GQ:PL 1/1:0,329:329:99:7300,724,0 chrVII 459355 . A G 7032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.721;DP=330;Dels=0.00;FS=3.472;HaplotypeScore=3.4894;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;MQRankSum=-0.842;QD=21.31;ReadPosRankSum=1.711;SB=-4.201e+03 GT:AD:DP:GQ:PL 1/1:1,326:330:99:7032,721,0 chrVII 459382 . T G 6366.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=9.7311;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.71;SB=-4.359e+03 GT:AD:DP:GQ:PL 1/1:0,323:323:99:6366,679,0 chrVII 459575 . A G 5560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=258;Dels=0.00;FS=2.540;HaplotypeScore=14.0200;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=-0.105;QD=21.55;ReadPosRankSum=2.887;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:3,254:257:99:5560,583,0 chrVII 459691 . G C 3620.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.7136;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.56;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3620,379,0 chrVII 459738 . T A 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.566;DP=215;Dels=0.00;FS=1.789;HaplotypeScore=24.2546;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;MQRankSum=0.343;QD=12.88;ReadPosRankSum=3.135;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:5,209:215:99:2803,303,0 chrVII 459753 . G T 601 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.03;FS=0.000;HaplotypeScore=153.1637;MLEAC=2;MLEAF=1.00;MQ=39.57;MQ0=0;QD=2.77;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:66:634,66,0 chrVII 459766 . C T 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.109;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.5651;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=0;MQRankSum=0.371;QD=5.15;ReadPosRankSum=-0.176;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:1078,120,0 chrVII 459767 . T C 1102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=206;Dels=0.00;FS=5.121;HaplotypeScore=5.8064;MLEAC=2;MLEAF=1.00;MQ=42.01;MQ0=0;MQRankSum=-1.553;QD=5.35;ReadPosRankSum=1.519;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:4,202:206:99:1135,129,0 chrVII 459867 . T A 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=17.8706;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-1.132;QD=22.86;ReadPosRankSum=2.373;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4412,471,0 chrVII 460049 . G A 5548.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=12.6856;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.19;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5548,559,0 chrVII 460066 . T C 5322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=239;Dels=0.00;FS=13.208;HaplotypeScore=8.7608;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-0.928;QD=22.27;ReadPosRankSum=2.937;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:3,235:239:99:5322,553,0 chrVII 460296 . T A 4268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.100;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.611;QD=25.11;ReadPosRankSum=-1.488;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4268,424,0 chrVII 460330 . T C 4601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=16.7104;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-1.660;QD=23.72;ReadPosRankSum=1.678;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4601,492,0 chrVII 460447 . C T 5374.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=27.28;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5374,535,0 chrVII 460477 . A G 4354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=177;Dels=0.00;FS=7.262;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.049;QD=24.60;ReadPosRankSum=2.339;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4354,465,0 chrVII 460726 . G A 4809.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.93;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4809,508,0 chrVII 460786 . A G 5141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=210;Dels=0.00;FS=3.611;HaplotypeScore=17.9247;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.566;QD=24.48;ReadPosRankSum=1.682;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:5141,550,0 chrVII 460823 . C A 4837.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.6914;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.81;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4837,481,0 chrVII 460947 . A G 5746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=19.4039;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.751;QD=24.35;ReadPosRankSum=1.687;SB=-3.203e+03 GT:AD:DP:GQ:PL 1/1:1,232:236:99:5746,595,0 chrVII 461071 . T C 5487.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.9677;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.28;SB=-3.058e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5487,577,0 chrVII 461146 . A G 5433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=226;Dels=0.00;FS=6.079;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.404;QD=24.04;ReadPosRankSum=2.406;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:2,222:226:99:5433,571,0 chrVII 461612 . T C 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=137;Dels=0.00;FS=2.665;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.386;QD=24.91;ReadPosRankSum=2.360;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3413,366,0 chrVII 461695 . T C 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=173;Dels=0.00;FS=2.859;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.399;QD=23.72;ReadPosRankSum=2.421;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4104,433,0 chrVII 461875 . G A 5109.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.42;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:5109,514,0 chrVII 462190 . A G 4802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=224;Dels=0.00;FS=3.028;HaplotypeScore=4.9589;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-1.211;QD=21.44;ReadPosRankSum=2.417;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:4802,511,0 chrVII 462196 . G A 4821.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.0174;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=22.42;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4821,478,0 chrVII 463027 . G A 4310.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.20;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4310,445,0 chrVII 463348 . A G 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.424;QD=23.69;ReadPosRankSum=1.659;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3412,363,0 chrVII 463372 . C A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1824;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.68;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3339,348,0 chrVII 463981 . A G 4349.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.0281;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.85;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4349,451,0 chrVII 464215 . T C 3015 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.55;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3048,324,0 chrVII 464366 . C T 2980 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3013,304,0 chrVII 464965 . T C 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=0.704;QD=21.03;ReadPosRankSum=1.694;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1968,207,0 chrVII 464972 . T C 1759 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.76;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1792,192,0 chrVII 465091 . T C 3296.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.21;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3296,351,0 chrVII 465118 . T C 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=120;Dels=0.00;FS=2.946;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.615;QD=22.19;ReadPosRankSum=2.366;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:2,116:120:99:2696,285,0 chrVII 465381 . T C 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.750;QD=23.05;ReadPosRankSum=1.705;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2960,315,0 chrVII 465447 . T A 2218 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.11;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2251,225,0 chrVII 465488 . G A 1914 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.79;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1947,192,0 chrVII 465503 . A T 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.423;QD=20.60;ReadPosRankSum=1.694;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1887,198,0 chrVII 465534 . T C 1664 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=17.89;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1697,183,0 chrVII 465790 . C T 1255 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.24;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1288,129,0 chrVII 465905 . G A 2517 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.49;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2550,270,0 chrVII 466029 . A T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.3281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.74;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3346,340,0 chrVII 466092 . T C 4384.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4384,463,0 chrVII 466305 . C T 6203.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=13.4071;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.04;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:6203,622,0 chrVII 466371 . C T 5900.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.0308;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.89;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5900,598,0 chrVII 466404 . T C 5095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.342;DP=221;Dels=0.00;FS=5.112;HaplotypeScore=15.0096;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.193;QD=23.05;ReadPosRankSum=3.381;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:4,217:221:99:5095,532,0 chrVII 466974 . C T 3371.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=23.41;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3371,337,0 chrVII 467277 . A T 5183.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.2081;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=24.45;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5183,517,0 chrVII 467379 . G A 5705.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=23.19;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5705,568,0 chrVII 467387 . T C 4699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-1.108;QD=20.08;ReadPosRankSum=1.717;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:1,232:234:99:4699,504,0 chrVII 467451 . C T 4845.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=13.2890;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.02;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:2,235:242:99:4845,508,0 chrVII 467473 . A G 5324.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.56;SB=-3.162e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5324,565,0 chrVII 467730 . C T 250 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=8.33;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:30:283,30,0 chrVII 467736 . T C 372.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.048;DP=47;Dels=0.00;FS=33.927;HaplotypeScore=14.7424;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=0.877;QD=7.92;ReadPosRankSum=-0.749;SB=-1.606e+01 GT:AD:DP:GQ:PL 1/1:6,41:47:22:405,22,0 chrVII 468710 . A G 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.1187;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.025;QD=24.28;ReadPosRankSum=1.707;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3350,345,0 chrVII 469047 . A G 35.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=74;Dels=0.00;FS=7.641;HaplotypeScore=7.0288;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=-0.417;QD=0.49;ReadPosRankSum=2.317;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:9:68,9,0 chrVII 469435 . A G 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=175;Dels=0.00;FS=2.575;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;MQRankSum=0.439;QD=23.30;ReadPosRankSum=2.913;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:4077,435,0 chrVII 469821 . T C 2704 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.92;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2737,297,0 chrVII 470028 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=24.73;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3536,375,0 chrVII 470055 . C T 3204.99 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.28;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3238,328,0 chrVII 470499 . G A 2429 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.08;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2462,249,0 chrVII 470529 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.52;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3137,313,0 chrVII 471171 . A G 4995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=204;Dels=0.00;FS=3.781;HaplotypeScore=14.8158;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.015;QD=24.49;ReadPosRankSum=1.698;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4995,529,0 chrVII 471518 . G T 4181.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.80;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4181,415,0 chrVII 471870 . G A 4678.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4678,475,0 chrVII 472019 . T C 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-1.599;QD=19.83;ReadPosRankSum=1.710;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3127,333,0 chrVII 472038 . G A 3642.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.6469;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.58;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:3642,381,0 chrVII 472176 . T C 4490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.5767;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.695;QD=23.76;ReadPosRankSum=1.640;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4490,472,0 chrVII 472215 . A G 5230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=213;Dels=0.00;FS=4.232;HaplotypeScore=9.6659;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.964;QD=24.55;ReadPosRankSum=1.699;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:5230,559,0 chrVII 472246 . G C 4161.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.9091;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.79;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4161,444,0 chrVII 472372 . C A 4638.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.16;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4638,495,0 chrVII 472609 . A G 6260.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=16.0832;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.84;SB=-3.162e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:6260,655,0 chrVII 472821 . G C 5928.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.7290;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.30;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5928,625,0 chrVII 473079 . G A 5398.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.83;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:5398,535,0 chrVII 473502 . T C 5008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=207;Dels=0.00;FS=2.972;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.113;QD=24.19;ReadPosRankSum=2.378;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:5008,523,0 chrVII 473949 . A T 4941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=8.1950;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=-0.642;QD=21.21;ReadPosRankSum=1.717;SB=-3.096e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:4941,496,0 chrVII 473951 . G T 5024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=-1.467;QD=21.20;ReadPosRankSum=1.629;SB=-3.208e+03 GT:AD:DP:GQ:PL 1/1:1,234:237:99:5024,499,0 chrVII 474296 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.965;QD=22.52;ReadPosRankSum=2.417;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3355,357,0 chrVII 474393 . C T 3298.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=24.43;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3298,325,0 chrVII 474400 . C T 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=5.154;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-1.215;QD=23.70;ReadPosRankSum=1.620;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3674,370,0 chrVII 474600 . G A 4436.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.75;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:0,189:194:99:4436,448,0 chrVII 474708 . T C 4558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.639;DP=228;Dels=0.00;FS=11.062;HaplotypeScore=13.5635;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-1.270;QD=19.99;ReadPosRankSum=3.736;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:5,222:228:99:4558,486,0 chrVII 474714 . G A 4434.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=5.6767;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=20.15;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4434,469,0 chrVII 474798 . C T 5353.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.4322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5353,556,0 chrVII 474965 . G A 5760.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.32;SB=-2.910e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5760,571,0 chrVII 475074 . C T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.3933;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.05;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4334,433,0 chrVII 475388 . T C 3557.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=5.4869;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.80;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3557,378,0 chrVII 475390 . A T 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=175;Dels=0.01;FS=2.581;HaplotypeScore=9.0983;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-0.448;QD=21.35;ReadPosRankSum=2.855;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3736,376,0 chrVII 475414 . A G 3814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=185;Dels=0.00;FS=2.581;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-1.892;QD=20.62;ReadPosRankSum=2.423;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3814,405,0 chrVII 475766 . G A 4434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.1190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.138;QD=26.08;ReadPosRankSum=0.441;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4434,442,0 chrVII 475858 . C T 4022.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.46;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4022,400,0 chrVII 476186 . A G 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.749;QD=25.46;ReadPosRankSum=1.708;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3616,376,0 chrVII 476814 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.30;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3228,322,0 chrVII 476820 . A G 2948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.069;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.889;QD=19.92;ReadPosRankSum=1.685;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2981,306,0 chrVII 477177 . C G 5270.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.43;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5270,568,0 chrVII 477384 . T C 4962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=216;Dels=0.00;FS=3.238;HaplotypeScore=16.5856;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.153;QD=22.97;ReadPosRankSum=1.684;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4962,526,0 chrVII 478308 . A T 6037.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.86;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:6037,601,0 chrVII 478509 . G A 4110.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4110,415,0 chrVII 479589 . C T 1084 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.79;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1117,114,0 chrVII 479883 . T G 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.428;QD=26.29;ReadPosRankSum=2.390;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:2189,225,0 chrVII 480612 . A G 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=189;Dels=0.00;FS=3.013;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.942;QD=23.01;ReadPosRankSum=2.385;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4348,451,0 chrVII 481776 . T C 6802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=16.8246;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.657;QD=24.47;ReadPosRankSum=1.720;SB=-3.039e+03 GT:AD:DP:GQ:PL 1/1:1,277:278:99:6802,718,0 chrVII 482042 . C T 5476.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=16.5540;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.20;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5476,568,0 chrVII 482421 . A G 6512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=271;Dels=0.00;FS=10.873;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=0.343;QD=24.03;ReadPosRankSum=2.413;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:2,266:271:99:6512,703,0 chrVII 482446 . G A 6141.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.89;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:6141,655,0 chrVII 482679 . T C 2928 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.85;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,159:164:99:2961,330,0 chrVII 482923 . G A 1586 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=26.00;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1619,159,0 chrVII 482953 . C G 1925 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.77;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1958,201,0 chrVII 482980 . T C 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.075;QD=22.13;ReadPosRankSum=2.390;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:2,80:84:99:1892,198,0 chrVII 483277 . A G 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.140;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.5255;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=2.295;QD=24.10;ReadPosRankSum=2.071;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3446,360,0 chrVII 483370 . A G 3933.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=25.37;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3933,415,0 chrVII 483704 . C T 4969.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=15.4957;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.66;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4969,496,0 chrVII 484725 . G A 2019 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.71;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2052,225,0 chrVII 484843 . C T 3632.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.76;MQ0=0;QD=26.13;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3632,370,0 chrVII 484951 . A G 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=97;Dels=0.00;FS=2.935;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.911;QD=23.23;ReadPosRankSum=2.398;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2286,246,0 chrVII 485184 . G A 2563 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=24.41;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2596,256,0 chrVII 485217 . A T 2505 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.63;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2538,252,0 chrVII 485223 . G A 2417 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.77;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2450,246,0 chrVII 485256 . A G 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-1.375;QD=23.04;ReadPosRankSum=1.707;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3166,336,0 chrVII 485456 . T C 2223 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=10.3968;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.65;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2256,234,0 chrVII 485631 . C T 2906 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.02;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2939,295,0 chrVII 485753 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=26.05;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3133,313,0 chrVII 485777 . A G 2875 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.00;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2908,306,0 chrVII 486003 . T C 2599 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.06;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2632,273,0 chrVII 486391 . G C 3847.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3847,408,0 chrVII 486595 . C T 4032.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.88;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4032,406,0 chrVII 486820 . C T 4321.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4321,436,0 chrVII 487057 . C T 4970.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.0647;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=25.10;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4970,505,0 chrVII 487114 . G A 5302.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.99;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5302,553,0 chrVII 487204 . G C 4678.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,192:196:99:4678,499,0 chrVII 487305 . C T 4166.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.4575;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.02;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4166,421,0 chrVII 487329 . G A 4031.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.39;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4031,400,0 chrVII 487652 . T C 2772 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2805,291,0 chrVII 487937 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=23.1068;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.39;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,129:134:99:2670,265,0 chrVII 489115 . C T 4249.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=16.4274;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.85;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4249,418,0 chrVII 489423 . A G 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.738;QD=22.29;ReadPosRankSum=1.672;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2596,267,0 chrVII 489481 . A G 1412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.199;QD=17.87;ReadPosRankSum=1.688;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1445,150,0 chrVII 489693 . T A 1722 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1755,186,0 chrVII 489734 . T C 2542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.323;QD=25.42;ReadPosRankSum=2.930;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:3,97:100:99:2575,270,0 chrVII 489810 . T C 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.6654;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.481;QD=23.25;ReadPosRankSum=1.648;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2939,309,0 chrVII 489944 . A G 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.443;DP=170;Dels=0.00;FS=7.325;HaplotypeScore=11.3540;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.022;QD=23.34;ReadPosRankSum=1.330;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3968,388,0 chrVII 490077 . C T 5129.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.08;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5129,526,0 chrVII 490117 . C T 5696.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.62;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5696,571,0 chrVII 490298 . C T 6455.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.03;SB=-3.235e+03 GT:AD:DP:GQ:PL 1/1:0,245:248:99:6455,643,0 chrVII 490467 . G A 6255.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.17;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:6255,637,0 chrVII 490539 . C G 5112.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.3593;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.24;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5112,538,0 chrVII 490647 . G A 5583.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.85;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5583,556,0 chrVII 490786 . C G 3374.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.45;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3374,349,0 chrVII 490997 . C T 3468.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8425;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=25.31;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3468,355,0 chrVII 491066 . G A 3979.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=25.67;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3979,417,0 chrVII 491171 . A G 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.732;QD=22.30;ReadPosRankSum=1.708;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3244,339,0 chrVII 491249 . G C 4778.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=22.54;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4778,496,0 chrVII 491259 . A T 5098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=224;Dels=0.00;FS=4.364;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=-1.175;QD=22.76;ReadPosRankSum=1.670;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:5098,511,0 chrVII 491350 . G A 4490.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.1685;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.08;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4490,457,0 chrVII 491698 . C A 4596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.319;DP=196;Dels=0.00;FS=3.218;HaplotypeScore=13.1258;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.063;QD=23.45;ReadPosRankSum=1.463;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:1,192:196:99:4596,443,0 chrVII 491950 . T C 4888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=204;Dels=0.00;FS=7.431;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.030;QD=23.96;ReadPosRankSum=2.401;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4888,514,0 chrVII 492059 . C A 4715.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.69;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4715,478,0 chrVII 492175 . G A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.02;FS=0.000;HaplotypeScore=18.6404;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.01;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3376,337,0 chrVII 492371 . A C 3181 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.28;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:3214,336,0 chrVII 492468 . C T 3413.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.91;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3413,346,0 chrVII 492864 . A G 7756.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.16;SB=-3.278e+03 GT:AD:DP:GQ:PL 1/1:0,320:321:99:7756,802,0 chrVII 493704 . A G 5981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=245;Dels=0.00;FS=3.831;HaplotypeScore=17.9723;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.363;QD=24.41;ReadPosRankSum=1.661;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5981,619,0 chrVII 493751 . C T 6902.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=14.1737;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=25.38;SB=-3.243e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:6902,694,0 chrVII 493848 . C T 7474.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=27.6158;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.07;SB=-4.290e+03 GT:AD:DP:GQ:PL 1/1:0,320:324:99:7474,748,0 chrVII 493944 . G A 8018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-1.162;QD=23.93;ReadPosRankSum=-1.535;SB=-4.808e+03 GT:AD:DP:GQ:PL 1/1:1,333:335:99:8018,802,0 chrVII 493949 . C T 7736.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=23.95;SB=-4.676e+03 GT:AD:DP:GQ:PL 1/1:0,320:323:99:7736,763,0 chrVII 494624 . A G 4120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.286;QD=22.51;ReadPosRankSum=1.675;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4120,430,0 chrVII 494636 . C T 4136.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.7278;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.88;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4136,415,0 chrVII 494870 . C T 3882.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.8711;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.57;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3882,411,0 chrVII 494918 . G A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.99;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3674,384,0 chrVII 495047 . A C 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=3.391;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.573;QD=22.82;ReadPosRankSum=1.653;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3022,318,0 chrVII 496647 . C T 2751 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=27.24;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2784,280,0 chrVII 496768 . C G 831 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=18.89;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:864,90,0 chrVII 496875 . A G 1003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;MQRankSum=-0.742;QD=20.47;ReadPosRankSum=1.662;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1036,108,0 chrVII 496881 . A G 959 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=34.8559;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;QD=22.30;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:992,102,0 chrVII 496909 . T C 687 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=20.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:78:720,78,0 chrVII 496916 . A C 585 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;MQRankSum=-1.621;QD=18.87;ReadPosRankSum=1.621;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,30:31:69:618,69,0 chrVII 496948 . A T 276 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=8.5289;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=0;QD=16.24;SB=-1.073e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:33:309,33,0 chrVII 496982 . T C 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=7.00;SB=-3.072e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:74,9,0 chrVII 496988 . C T 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=8.50;SB=-3.172e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:83,9,0 chrVII 496991 . C A 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=4.46;SB=-3.026e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:58,6,0 chrVII 497005 . A G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.76;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:55,6,0 chrVII 497008 . G T 50.97 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.74;SB=-5.521e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:83,9,0 chrVII 497020 . A T 49.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.49;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:82,9,0 chrVII 497029 . A G 54.97 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.74;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:87,9,0 chrVII 497046 . A T 76.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.93;SB=-2.939e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:109,12,0 chrVII 497050 . G A 82.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.79;SB=-3.026e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:115,12,0 chrVII 497059 . T C 229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.273;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=0.116;QD=15.27;ReadPosRankSum=1.504;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:30:262,30,0 chrVII 497405 . G A 3074 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=23.47;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3107,313,0 chrVII 497413 . A T 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.383;DP=118;Dels=0.00;FS=5.297;HaplotypeScore=87.3668;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=0.082;QD=21.90;ReadPosRankSum=3.383;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:4,114:118:99:2617,279,0 chrVII 497422 . T A 162.06 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=99.2135;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=1.36;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:21:195,21,0 chrVII 497763 . G A 3466.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.27;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3466,372,0 chrVII 497968 . A G 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=111;Dels=0.00;FS=5.682;HaplotypeScore=12.6914;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.082;QD=21.76;ReadPosRankSum=2.937;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2448,258,0 chrVII 498201 . G C 1841 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.30;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1874,204,0 chrVII 498425 . T G 3294.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1143;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3294,351,0 chrVII 498521 . T C 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=161;Dels=0.00;FS=3.176;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.390;QD=24.10;ReadPosRankSum=1.710;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3880,390,0 chrVII 498665 . C T 3209.99 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3243,336,0 chrVII 499429 . T C 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.570;QD=24.14;ReadPosRankSum=1.667;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2616,276,0 chrVII 499455 . T C 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.9035;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.145;QD=23.83;ReadPosRankSum=1.673;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2845,297,0 chrVII 499647 . T C 4269.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=167;Dels=0.00;FS=3.018;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.110;QD=25.56;ReadPosRankSum=2.420;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4269,433,0 chrVII 499817 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3430,349,0 chrVII 499980 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.88;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3629,390,0 chrVII 500059 . T G 2879 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2912,300,0 chrVII 500187 . A G 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-0.180;QD=24.76;ReadPosRankSum=1.649;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:3153,327,0 chrVII 500228 . A G 3534.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=25.80;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3534,381,0 chrVII 500260 . C A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.4600;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=26.48;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3310,331,0 chrVII 500434 . A G 3447.01 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=20.52;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3447,372,0 chrVII 500440 . G T 3499.01 SnpCluster AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=21.08;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3499,358,0 chrVII 500444 . C G 3162 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=19.40;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3195,330,0 chrVII 500467 . G A 3169 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=20.71;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3202,319,0 chrVII 500745 . G C 4553.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=26.02;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4553,469,0 chrVII 500877 . A T 3949.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.6800;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.15;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3949,400,0 chrVII 501079 . T C 3961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.9972;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.523;QD=23.44;ReadPosRankSum=1.691;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3961,412,0 chrVII 501547 . A T 3596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=148;Dels=0.00;FS=7.599;HaplotypeScore=10.8978;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.254;QD=24.30;ReadPosRankSum=2.383;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3596,373,0 chrVII 501606 . T C 3992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.050;QD=25.27;ReadPosRankSum=2.403;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3992,421,0 chrVII 501886 . T C 3207 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.24;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3240,336,0 chrVII 502135 . G A 3672.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.0513;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.69;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3672,393,0 chrVII 502282 . G T 4092.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.86;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4092,430,0 chrVII 502321 . C T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.5388;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.87;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,137:142:99:3390,340,0 chrVII 502398 . T A 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=4.933;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-1.277;QD=21.77;ReadPosRankSum=1.631;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3016,309,0 chrVII 502400 . G C 2935 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.27;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2968,306,0 chrVII 502491 . G A 1705 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.37;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1738,177,0 chrVII 502807 . C T 1911 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.30;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1944,201,0 chrVII 502964 . A G 2842 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.86;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2875,303,0 chrVII 502974 . T C 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.067;QD=21.15;ReadPosRankSum=1.705;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2783,291,0 chrVII 503498 . T C 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=204;Dels=0.00;FS=11.433;HaplotypeScore=13.9554;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.658;QD=22.42;ReadPosRankSum=2.817;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:3,200:204:99:4574,487,0 chrVII 503654 . A G 4198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.6972;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.306;QD=23.45;ReadPosRankSum=1.713;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4198,445,0 chrVII 503685 . T C 4051.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.69;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4051,421,0 chrVII 503816 . A G 4544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=3.736;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.933;QD=24.97;ReadPosRankSum=1.656;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4544,466,0 chrVII 504168 . G C 4999.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.64;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4999,520,0 chrVII 504342 . T A 4417.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.83;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4417,436,0 chrVII 504753 . T C 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.0111;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.026;QD=24.41;ReadPosRankSum=1.706;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3255,337,0 chrVII 505867 . A T 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=175;Dels=0.00;FS=5.560;HaplotypeScore=16.6686;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.064;QD=23.07;ReadPosRankSum=2.948;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:4038,409,0 chrVII 506019 . C T 4636.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.9534;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4636,484,0 chrVII 507086 . A C 5786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=22.9287;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.171;QD=21.83;ReadPosRankSum=1.693;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:1,263:265:99:5786,624,0 chrVII 507124 . G A 6633.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=26.75;SB=-3.432e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:6633,661,0 chrVII 507154 . T C 5346.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.08;SB=-2.974e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5346,553,0 chrVII 507287 . A T 5049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.6474;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.527;QD=24.39;ReadPosRankSum=1.699;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:5049,505,0 chrVII 507742 . T C 5994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.268;QD=23.60;ReadPosRankSum=1.678;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:5994,631,0 chrVII 508075 . A G 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.312;DP=167;Dels=0.00;FS=4.588;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.511;QD=20.59;ReadPosRankSum=3.407;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:4,162:167:99:3438,358,0 chrVII 508084 . A G 3147 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.7102;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.84;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3180,345,0 chrVII 508201 . T C 4630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.5708;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=1.383;QD=22.37;ReadPosRankSum=2.390;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:2,203:207:99:4630,481,0 chrVII 508206 . A G 4377.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.1224;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.36;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,211:215:99:4377,468,0 chrVII 508419 . T C 5235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=243;Dels=0.00;FS=4.508;HaplotypeScore=12.7348;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=-0.144;QD=21.54;ReadPosRankSum=1.703;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:1,239:243:99:5235,544,0 chrVII 508460 . G A 4930.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.9668;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=22.21;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4930,520,0 chrVII 508488 . A G 4331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=188;Dels=0.00;FS=5.970;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-0.631;QD=23.04;ReadPosRankSum=2.866;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:4331,456,0 chrVII 508787 . T G 1752 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=18.44;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,91:95:99:1785,192,0 chrVII 509101 . A G 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=168;Dels=0.00;FS=4.493;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.501;QD=23.85;ReadPosRankSum=1.711;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:4007,435,0 chrVII 509580 . C T 4259.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.20;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4259,430,0 chrVII 509895 . T G 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=177;Dels=0.00;FS=3.772;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.697;QD=19.89;ReadPosRankSum=1.672;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:3520,381,0 chrVII 509926 . T A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.2514;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.12;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3400,357,0 chrVII 510059 . C T 5994.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=20.5020;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.08;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:0,236:239:99:5994,607,0 chrVII 510416 . A G 4465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=205;Dels=0.00;FS=6.303;HaplotypeScore=17.3195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.656;QD=21.78;ReadPosRankSum=2.377;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4465,480,0 chrVII 510553 . A G 8027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=305;Dels=0.00;FS=5.097;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.026;QD=26.32;ReadPosRankSum=1.721;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:1,303:305:99:8027,829,0 chrVII 511938 . G A 4826.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.0136;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4826,505,0 chrVII 512135 . T C 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.5874;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-1.332;QD=24.19;ReadPosRankSum=1.712;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4209,442,0 chrVII 512279 . A G 5904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=258;Dels=0.00;FS=6.000;HaplotypeScore=13.4394;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.246;QD=22.88;ReadPosRankSum=2.871;SB=-3.124e+03 GT:AD:DP:GQ:PL 1/1:3,254:258:99:5904,637,0 chrVII 512350 . A T 6091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=237;Dels=0.00;FS=4.073;HaplotypeScore=13.4629;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.614;QD=25.70;ReadPosRankSum=1.614;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:1,234:237:99:6091,610,0 chrVII 513154 . C A 5187.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=26.8329;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:5187,547,0 chrVII 513253 . A G 4547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.204;QD=21.45;ReadPosRankSum=1.699;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:4547,472,0 chrVII 513264 . C T 4568.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.07;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4568,454,0 chrVII 513303 . G A 5653.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=12.6454;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.85;SB=-3.053e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5653,577,0 chrVII 513842 . C T 7188.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=15.9743;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.76;SB=-3.976e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:99:7188,715,0 chrVII 514313 . G A 3947.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.55;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3947,417,0 chrVII 514414 . T C 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.676;QD=25.06;ReadPosRankSum=1.648;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3140,330,0 chrVII 514497 . A G 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=135;Dels=0.00;FS=12.650;HaplotypeScore=5.7493;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.826;QD=22.27;ReadPosRankSum=2.887;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:3,130:135:99:3040,315,0 chrVII 514511 . C T 2938 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.29;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2971,309,0 chrVII 514736 . C G 5687.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=25.39;SB=-3.109e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5687,592,0 chrVII 514934 . T C 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=4.217;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.650;QD=24.00;ReadPosRankSum=1.691;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4104,424,0 chrVII 515594 . G A 4436.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4436,448,0 chrVII 516638 . C T 2578 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.79;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2611,259,0 chrVII 516867 . G A 3430.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.2795;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.49;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3430,360,0 chrVII 517686 . G A 1541.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.276;DP=345;Dels=0.00;FS=36.275;HaplotypeScore=10.5248;MLEAC=1;MLEAF=0.500;MQ=46.82;MQ0=0;MQRankSum=-7.183;QD=4.47;ReadPosRankSum=-6.940;SB=-9.220e+02 GT:AD:DP:GQ:PL 0/1:215,130:345:99:1571,0,2967 chrVII 517689 . G A 1363.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.644;DP=334;Dels=0.00;FS=36.485;HaplotypeScore=8.9475;MLEAC=1;MLEAF=0.500;MQ=46.77;MQ0=0;MQRankSum=-7.583;QD=4.08;ReadPosRankSum=-7.528;SB=-7.870e+02 GT:AD:DP:GQ:PL 0/1:217,116:334:99:1393,0,3024 chrVII 517695 . C T 963.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.666;DP=326;Dels=0.00;FS=19.107;HaplotypeScore=10.4427;MLEAC=1;MLEAF=0.500;MQ=47.84;MQ0=0;MQRankSum=-8.923;QD=2.95;ReadPosRankSum=-9.073;SB=-6.950e+02 GT:AD:DP:GQ:PL 0/1:223,103:326:99:993,0,3443 chrVII 517701 . C T 669.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.500;DP=306;Dels=0.00;FS=14.219;HaplotypeScore=10.1520;MLEAC=1;MLEAF=0.500;MQ=49.73;MQ0=0;MQRankSum=-9.664;QD=2.19;ReadPosRankSum=-10.011;SB=-5.280e+02 GT:AD:DP:GQ:PL 0/1:226,80:306:99:699,0,4009 chrVII 517702 . C T 639.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.772;DP=304;Dels=0.00;FS=17.601;HaplotypeScore=9.3634;MLEAC=1;MLEAF=0.500;MQ=49.75;MQ0=0;MQRankSum=-9.504;QD=2.10;ReadPosRankSum=-10.486;SB=-4.330e+02 GT:AD:DP:GQ:PL 0/1:227,77:304:99:669,0,4026 chrVII 519278 . G A 3513.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.38;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3513,355,0 chrVII 519381 . G A 3791.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.1822;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.40;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3791,382,0 chrVII 520131 . C A 5015.01 SnpCluster AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=21.07;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5015,523,0 chrVII 520140 . A G 4491.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-1.224;QD=19.87;ReadPosRankSum=1.686;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:4491,478,0 chrVII 520141 . G C 4605.01 SnpCluster AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.74;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4605,478,0 chrVII 520680 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.946;HaplotypeScore=10.5311;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.765;QD=25.06;ReadPosRankSum=1.705;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3265,339,0 chrVII 520898 . A G 4064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=176;Dels=0.00;FS=3.033;HaplotypeScore=11.1494;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.715;QD=23.09;ReadPosRankSum=2.393;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:2,172:176:99:4064,435,0 chrVII 521004 . T C 4679.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.89;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4679,499,0 chrVII 521128 . G A 3218.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.3032;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.99;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3251,331,0 chrVII 521192 . G A 4639.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.1423;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4639,466,0 chrVII 522131 . C T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.10;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3446,343,0 chrVII 522374 . G A 3952.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.35;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3952,394,0 chrVII 522653 . A G 2805 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.74;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,123:129:99:2838,297,0 chrVII 522677 . T C 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=125;Dels=0.00;FS=2.932;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.883;QD=23.03;ReadPosRankSum=2.410;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2912,303,0 chrVII 523190 . G T 3787.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=25.59;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3787,376,0 chrVII 523348 . C T 2996 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.1469;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=21.71;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3029,309,0 chrVII 523385 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=40.89;MQ0=0;QD=17.29;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2731,274,0 chrVII 523392 . A G 2500 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;QD=15.92;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2533,267,0 chrVII 523412 . A G 2338 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=0;QD=13.51;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2371,252,0 chrVII 523415 . G T 2384 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=14.45;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2417,243,0 chrVII 523417 . C T 2337 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.73;MQ0=0;QD=13.59;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2370,243,0 chrVII 523951 . T A 3929.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.8598;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.68;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3929,397,0 chrVII 524176 . C T 3779.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3779,396,0 chrVII 524215 . C T 3966.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.9131;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.92;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3966,412,0 chrVII 524258 . G A 4816.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=16.5938;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.04;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4816,493,0 chrVII 524356 . C T 4359.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.49;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4359,442,0 chrVII 524777 . C G 3856.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.55;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3856,406,0 chrVII 524803 . T C 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=3.157;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.264;QD=23.27;ReadPosRankSum=1.709;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3514,372,0 chrVII 525205 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.52;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3853,405,0 chrVII 525390 . T C 4931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=200;Dels=0.00;FS=2.992;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.305;QD=24.66;ReadPosRankSum=2.425;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:2,195:200:99:4931,520,0 chrVII 525947 . A G 5253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.780;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.2313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.106;QD=23.77;ReadPosRankSum=1.300;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:2,218:221:99:5253,547,0 chrVII 526005 . A G 5427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=226;Dels=0.00;FS=3.017;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.136;QD=24.01;ReadPosRankSum=2.417;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:5427,574,0 chrVII 526684 . T C 2790 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.50;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2823,294,0 chrVII 526833 . T A 1399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.602;DP=88;Dels=0.00;FS=2.878;HaplotypeScore=10.7431;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.378;QD=15.90;ReadPosRankSum=2.394;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1432,159,0 chrVII 527159 . A G 4710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=211;Dels=0.00;FS=2.881;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.228;QD=22.32;ReadPosRankSum=2.367;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:2,207:211:99:4710,502,0 chrVII 529347 . A T 5888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=253;Dels=0.00;FS=4.983;HaplotypeScore=24.3670;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.031;QD=23.27;ReadPosRankSum=1.691;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:1,251:253:99:5888,592,0 chrVII 529383 . A G 6131.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.96;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:6131,664,0 chrVII 529504 . G A 9635.01 filter AC=2;AF=1.00;AN=2;DP=398;Dels=0.00;FS=0.000;HaplotypeScore=30.5255;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.21;SB=-4.727e+03 GT:AD:DP:GQ:PL 1/1:0,393:398:99:9635,962,0 chrVII 529563 . C T 11747.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=495;Dels=0.00;FS=4.815;HaplotypeScore=29.1369;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.409;QD=23.73;ReadPosRankSum=0.561;SB=-4.353e+03 GT:AD:DP:GQ:PL 1/1:1,493:495:99:11747,1193,0 chrVII 529630 . A G 8946.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=447;Dels=0.00;FS=6.829;HaplotypeScore=11.2896;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.245;QD=20.01;ReadPosRankSum=2.416;SB=-5.418e+03 GT:AD:DP:GQ:PL 1/1:2,443:447:99:8946,952,0 chrVII 529644 . A T 8790.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=429;Dels=0.00;FS=6.640;HaplotypeScore=15.6448;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-0.071;QD=20.49;ReadPosRankSum=2.289;SB=-5.883e+03 GT:AD:DP:GQ:PL 1/1:2,427:429:99:8790,884,0 chrVII 529812 . G A 10679.01 filter AC=2;AF=1.00;AN=2;DP=536;Dels=0.00;FS=0.000;HaplotypeScore=26.4326;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=19.92;SB=-6.611e+03 GT:AD:DP:GQ:PL 1/1:0,535:536:99:10679,1079,0 chrVII 530011 . T A 314.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.816;DP=776;Dels=0.00;FS=63.254;HaplotypeScore=350.4777;MLEAC=1;MLEAF=0.500;MQ=40.90;MQ0=0;MQRankSum=-14.890;QD=0.40;ReadPosRankSum=-3.233;SB=-6.360e+02 GT:AD:DP:GQ:PL 0/1:570,206:776:99:344,0,5275 chrVII 530012 . C T 276.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.643;DP=774;Dels=0.00;FS=65.146;HaplotypeScore=347.1841;MLEAC=1;MLEAF=0.500;MQ=40.90;MQ0=0;MQRankSum=-13.632;QD=0.36;ReadPosRankSum=-2.587;SB=-6.500e+02 GT:AD:DP:GQ:PL 0/1:567,207:774:99:306,0,5049 chrVII 530016 . A C 747.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.081;DP=812;Dels=0.00;FS=121.015;HaplotypeScore=355.2714;MLEAC=1;MLEAF=0.500;MQ=40.57;MQ0=0;MQRankSum=-13.178;QD=0.92;ReadPosRankSum=-2.501;SB=-1.708e+03 GT:AD:DP:GQ:PL 0/1:448,364:812:99:777,0,5097 chrVII 530018 . C T 722.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;DP=805;Dels=0.00;FS=110.267;HaplotypeScore=357.2549;MLEAC=1;MLEAF=0.500;MQ=40.62;MQ0=0;MQRankSum=-13.068;QD=0.90;ReadPosRankSum=1.397;SB=-1.419e+03 GT:AD:DP:GQ:PL 0/1:488,316:804:99:752,0,5035 chrVII 530034 . A C 7143.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.943;DP=836;Dels=0.00;FS=0.531;HaplotypeScore=81.8110;MLEAC=2;MLEAF=1.00;MQ=39.78;MQ0=0;MQRankSum=1.502;QD=8.54;ReadPosRankSum=-5.292;SB=-7.379e+03 GT:AD:DP:GQ:PL 1/1:56,779:836:99:7143,693,0 chrVII 530040 . A C 2577.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.700;DP=851;Dels=0.00;FS=78.247;HaplotypeScore=84.9956;MLEAC=1;MLEAF=0.500;MQ=39.29;MQ0=0;MQRankSum=-7.703;QD=3.03;ReadPosRankSum=4.706;SB=-2.710e+03 GT:AD:DP:GQ:PL 0/1:365,486:851:99:2607,0,3318 chrVII 530067 . C A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.700;DP=625;Dels=0.01;FS=23.750;HaplotypeScore=364.8236;MLEAC=1;MLEAF=0.500;MQ=38.50;MQ0=0;MQRankSum=-3.747;QD=0.04;ReadPosRankSum=-5.086;SB=-2.790e+02 GT:AD:DP:GQ:PL 0/1:520,92:616:56:56,0,4549 chrVII 530071 . A T 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.628;DP=627;Dels=0.00;FS=25.940;HaplotypeScore=171.3854;MLEAC=1;MLEAF=0.500;MQ=38.75;MQ0=0;MQRankSum=-2.596;QD=0.08;ReadPosRankSum=-6.330;SB=-3.540e+02 GT:AD:DP:GQ:PL 0/1:530,92:627:79:79,0,4943 chrVII 530308 . A G 4550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.118;QD=20.50;ReadPosRankSum=1.685;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:4550,478,0 chrVII 530472 . A T 4545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=-1.104;QD=24.97;ReadPosRankSum=1.713;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4545,454,0 chrVII 530583 . G A 4394.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.6380;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.55;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4394,439,0 chrVII 530647 . A G 4435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=266;Dels=0.00;FS=5.659;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;MQRankSum=-0.072;QD=16.67;ReadPosRankSum=1.719;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,264:266:99:4435,477,0 chrVII 530805 . A T 5375.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.7704;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.49;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5375,541,0 chrVII 531034 . T C 1601 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.99;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1634,171,0 chrVII 531080 . T C 1045 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=16.33;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1078,114,0 chrVII 531192 . T A 1211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.097;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.783;QD=24.22;ReadPosRankSum=2.350;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:2,48:50:99:1244,126,0 chrVII 531481 . T G 4985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=205;Dels=0.00;FS=2.168;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.807;QD=24.32;ReadPosRankSum=1.995;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:3,200:205:99:4985,529,0 chrVII 532771 . G A 2468 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2501,261,0 chrVII 532815 . T C 2488 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2521,264,0 chrVII 533328 . A G 3896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.269;QD=23.90;ReadPosRankSum=1.711;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3896,403,0 chrVII 533626 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.57;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3498,369,0 chrVII 533759 . T C 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=150;Dels=0.00;FS=4.173;HaplotypeScore=19.4434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.198;QD=23.57;ReadPosRankSum=1.686;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3536,366,0 chrVII 533941 . A T 1406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.378;QD=22.68;ReadPosRankSum=2.251;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1439,144,0 chrVII 534011 . T C 2034 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.66;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2067,216,0 chrVII 534162 . A G 2448 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.50;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2481,264,0 chrVII 534518 . C T 3940.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.7608;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=26.44;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3940,400,0 chrVII 534684 . A G 3116 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.3969;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.43;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3149,339,0 chrVII 534707 . G A 3111 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.91;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3144,330,0 chrVII 534739 . T C 3752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=3.923;HaplotypeScore=7.2427;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-0.283;QD=24.52;ReadPosRankSum=1.619;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3752,388,0 chrVII 534914 . A G 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=0.438;QD=22.58;ReadPosRankSum=1.690;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1907,201,0 chrVII 534961 . T C 1881 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=20.67;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1914,198,0 chrVII 534966 . G A 1700 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=68.4658;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=20.00;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1733,174,0 chrVII 534988 . G A 1383 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=20.64;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1416,144,0 chrVII 535018 . T A 1457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=73;Dels=0.00;FS=3.720;HaplotypeScore=7.1045;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;MQRankSum=-0.166;QD=19.96;ReadPosRankSum=1.637;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1490,153,0 chrVII 535120 . A G 2188 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=26.05;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2221,234,0 chrVII 535135 . C T 2042 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=27.97;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2075,210,0 chrVII 535212 . G T 239 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;QD=15.93;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:30:272,30,0 chrVII 535692 . A C 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.637;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;MQRankSum=1.474;QD=24.34;ReadPosRankSum=1.681;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1664,177,0 chrVII 541712 . A G 810 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.61;MQ0=0;QD=9.88;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:90:843,90,0 chrVII 541808 . G A 2594 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=24.47;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2627,276,0 chrVII 542099 . A C 3145 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.69;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3178,339,0 chrVII 542100 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.04;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,152:157:99:3304,337,0 chrVII 542283 . C T 5101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.355;DP=203;Dels=0.00;FS=4.133;HaplotypeScore=10.6565;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.698;QD=25.13;ReadPosRankSum=-0.600;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:5101,515,0 chrVII 542757 . A G 5771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=238;Dels=0.00;FS=3.029;HaplotypeScore=18.5528;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.004;QD=24.25;ReadPosRankSum=2.387;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:2,234:238:99:5771,592,0 chrVII 543267 . G A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3396,343,0 chrVII 543476 . A T 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=89;Dels=0.00;FS=5.022;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.343;QD=25.69;ReadPosRankSum=1.693;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2319,231,0 chrVII 543670 . C A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.76;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3372,354,0 chrVII 544219 . A G 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.324;QD=22.13;ReadPosRankSum=1.694;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2047,216,0 chrVII 544222 . C T 2056 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=23.36;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2089,207,0 chrVII 544260 . A T 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-0.827;QD=20.75;ReadPosRankSum=1.693;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1859,189,0 chrVII 544286 . T G 2103 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.86;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2136,219,0 chrVII 544385 . T C 637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.310;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;MQRankSum=-0.211;QD=15.17;ReadPosRankSum=1.648;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:1,40:42:72:670,72,0 chrVII 544396 . A G 714 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=17.41;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:78:747,78,0 chrVII 544465 . C T 2363 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=24.87;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2396,237,0 chrVII 544651 . A C 3223.06 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.4943;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=25.18;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3256,339,0 chrVII 544686 . T A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=15.9549;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=24.49;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3266,328,0 chrVII 544845 . C T 1983 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=19.63;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2016,210,0 chrVII 544851 . C T 1867 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.25;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1900,201,0 chrVII 544864 . C A 1890 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.69;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1923,201,0 chrVII 544909 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=22.24;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2969,306,0 chrVII 544938 . G C 3088 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=23.22;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3121,324,0 chrVII 544952 . T C 3010 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=22.46;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3043,318,0 chrVII 545033 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=22.75;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2809,297,0 chrVII 545099 . C T 2602 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=25.76;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2635,267,0 chrVII 545156 . A C 1989 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=21.39;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2022,210,0 chrVII 545169 . T A 2083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;MQRankSum=-1.396;QD=20.22;ReadPosRankSum=1.665;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2116,213,0 chrVII 545175 . G C 2072 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=18.84;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2105,231,0 chrVII 545191 . T C 2276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=113;Dels=0.03;FS=0.000;HaplotypeScore=18.9745;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;MQRankSum=-1.701;QD=20.14;ReadPosRankSum=1.669;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2309,246,0 chrVII 545226 . G C 2347 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;QD=19.08;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2380,252,0 chrVII 545236 . A G 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=126;Dels=0.00;FS=3.038;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;MQRankSum=-1.131;QD=19.53;ReadPosRankSum=2.410;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2494,264,0 chrVII 545279 . A T 128.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=142;Dels=0.02;FS=3.105;HaplotypeScore=138.3928;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;MQRankSum=-0.287;QD=0.90;ReadPosRankSum=1.657;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:18:161,18,0 chrVII 545319 . T A 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.264;DP=153;Dels=0.00;FS=5.228;HaplotypeScore=5.6823;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-1.229;QD=19.59;ReadPosRankSum=3.402;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:4,149:153:99:3030,304,0 chrVII 545582 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.90;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3800,400,0 chrVII 545825 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.35;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2000,201,0 chrVII 545844 . T C 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-1.732;QD=21.34;ReadPosRankSum=1.692;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1911,198,0 chrVII 545856 . C T 2032 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.62;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2065,210,0 chrVII 545954 . C A 3035 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=27.84;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3068,310,0 chrVII 546367 . G A 1455 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=0;QD=12.76;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1488,153,0 chrVII 546385 . T C 1397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=0;MQRankSum=-1.393;QD=10.50;ReadPosRankSum=1.706;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:1430,147,0 chrVII 546392 . G A 1508 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=146.1772;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=0;QD=10.05;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:1541,156,0 chrVII 546506 . C T 3946.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=17.9613;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=25.46;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3946,412,0 chrVII 546634 . T A 7795.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=12.7702;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=24.82;SB=-3.404e+03 GT:AD:DP:GQ:PL 1/1:0,314:314:99:7795,770,0 chrVII 547333 . A G 11005.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.145;DP=482;Dels=0.00;FS=19.496;HaplotypeScore=39.3793;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.177;QD=22.83;ReadPosRankSum=4.180;SB=-6.207e+03 GT:AD:DP:GQ:PL 1/1:6,474:482:99:11005,1145,0 chrVII 547886 . A G 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.742;QD=22.37;ReadPosRankSum=1.622;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2874,303,0 chrVII 548923 . T C 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.461;QD=25.43;ReadPosRankSum=1.649;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4221,442,0 chrVII 548953 . A G 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=3.314;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.328;QD=24.99;ReadPosRankSum=1.709;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3699,393,0 chrVII 549148 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.6043;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.92;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3575,384,0 chrVII 549283 . C T 3540.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.22;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3540,349,0 chrVII 549407 . C T 4890.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.72;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4890,496,0 chrVII 549493 . T C 4426.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.5814;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.19;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4426,474,0 chrVII 549656 . T C 5236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=219;Dels=0.00;FS=6.002;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.840;QD=23.91;ReadPosRankSum=2.968;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:3,216:219:99:5236,547,0 chrVII 549847 . C T 5058.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.0542;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5058,514,0 chrVII 550438 . A C 3533.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3533,369,0 chrVII 551356 . A G 4191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=3.161;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.413;QD=23.68;ReadPosRankSum=1.712;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4191,447,0 chrVII 551439 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=134;Dels=0.00;FS=3.043;HaplotypeScore=10.3564;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.730;QD=24.09;ReadPosRankSum=2.413;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3261,333,0 chrVII 551689 . A G 3467.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.94;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3467,361,0 chrVII 552400 . C A 4311.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.9464;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.93;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4311,451,0 chrVII 553252 . G C 5824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.388;DP=298;Dels=0.00;FS=3.935;HaplotypeScore=16.2144;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.649;QD=19.54;ReadPosRankSum=1.708;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:2,293:298:99:5824,639,0 chrVII 553711 . T C 6025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=9.3045;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.494;QD=24.49;ReadPosRankSum=2.430;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:2,244:246:99:6025,646,0 chrVII 553796 . C T 3788.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=22.15;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3788,373,0 chrVII 553821 . C A 4083.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.94;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4083,406,0 chrVII 553824 . G A 4052.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=22.02;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4052,403,0 chrVII 553878 . C T 4612.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.72;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4612,451,0 chrVII 553967 . A G 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.083;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.4259;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.046;QD=22.08;ReadPosRankSum=2.413;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2992,315,0 chrVII 554033 . C A 1945 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=11.8149;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.43;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1978,207,0 chrVII 554830 . G A 4456.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.6786;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=25.03;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4456,451,0 chrVII 554853 . T C 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=191;Dels=0.00;FS=4.267;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.954;QD=22.90;ReadPosRankSum=1.714;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,186:191:99:4374,451,0 chrVII 554980 . G A 5066.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.3940;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=24.36;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5066,508,0 chrVII 555047 . C T 2568 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=21.05;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2601,261,0 chrVII 555048 . C T 2565 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=21.20;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2598,261,0 chrVII 555234 . A C 1231 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=20.86;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1264,132,0 chrVII 555526 . G A 2623 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=28.20;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2656,267,0 chrVII 555676 . T C 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=0.445;QD=18.29;ReadPosRankSum=1.707;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2593,288,0 chrVII 555677 . C T 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=0.968;QD=17.98;ReadPosRankSum=1.589;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2640,291,0 chrVII 556096 . A G 2301 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2334,240,0 chrVII 557243 . T C 4482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.617;QD=25.32;ReadPosRankSum=1.693;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4482,475,0 chrVII 557597 . C T 1043 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1076,111,0 chrVII 557845 . T G 3451.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.13;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3451,358,0 chrVII 558437 . T C 4037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=173;Dels=0.00;FS=4.647;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.040;QD=23.34;ReadPosRankSum=1.712;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4037,430,0 chrVII 558800 . G T 4033.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=22.53;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4033,415,0 chrVII 558809 . T C 3676.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.50;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3676,390,0 chrVII 558946 . G A 3813.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=25.59;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3813,385,0 chrVII 558969 . G A 2662 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=21.64;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2695,279,0 chrVII 559340 . A G 2981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=141;Dels=0.00;FS=2.552;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.82;MQ0=0;MQRankSum=-0.576;QD=21.14;ReadPosRankSum=2.936;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:3014,315,0 chrVII 559498 . G A 2695 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=24.28;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2728,273,0 chrVII 560083 . G A 6076.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=25.53;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6076,640,0 chrVII 560314 . A C 5890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.623;DP=259;Dels=0.00;FS=12.146;HaplotypeScore=25.3355;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.006;QD=22.74;ReadPosRankSum=3.800;SB=-3.181e+03 GT:AD:DP:GQ:PL 1/1:5,251:259:99:5890,625,0 chrVII 560350 . C T 5409.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.0700;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.83;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5409,541,0 chrVII 560364 . C T 4804.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=21.74;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4804,487,0 chrVII 560495 . C T 3821.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4199;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.77;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3821,388,0 chrVII 560557 . A G 5168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.674;DP=228;Dels=0.00;FS=7.901;HaplotypeScore=25.3902;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-2.234;QD=22.67;ReadPosRankSum=3.722;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:5,222:228:99:5168,550,0 chrVII 561434 . A C 2587 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.30;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2620,276,0 chrVII 561585 . A C 1735 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=22.53;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1768,192,0 chrVII 561645 . G A 1040 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=34.7737;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=21.67;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1073,108,0 chrVII 561745 . A C 796 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.10;MQ0=0;QD=20.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:84:829,84,0 chrVII 561747 . G T 826 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.10;MQ0=0;QD=21.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:84:859,84,0 chrVII 561756 . G A 728 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=20.22;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:36:75:761,75,0 chrVII 568130 . G C 2653 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=22.48;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2686,285,0 chrVII 568138 . G A 2427 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=20.39;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2460,261,0 chrVII 568139 . G A 2600 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=21.31;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2633,264,0 chrVII 568150 . A G 2898 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=21.31;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2931,306,0 chrVII 568237 . A G 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=3.358;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-1.732;QD=24.97;ReadPosRankSum=1.684;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3570,370,0 chrVII 568306 . A G 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-0.919;QD=22.72;ReadPosRankSum=1.680;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3032,318,0 chrVII 568323 . A G 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=0.817;QD=22.98;ReadPosRankSum=2.412;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3043,312,0 chrVII 568421 . G T 3144 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=25.98;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3177,333,0 chrVII 568463 . T A 2095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=5.728;HaplotypeScore=8.9062;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=0.765;QD=24.36;ReadPosRankSum=1.652;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2128,216,0 chrVII 568505 . G C 1302 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=24.11;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1335,138,0 chrVII 568510 . T C 1294 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=23.11;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1327,138,0 chrVII 568593 . T C 1176 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=22.19;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1209,123,0 chrVII 568617 . G A 1119 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=23.81;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1152,117,0 chrVII 568646 . G C 821 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=23.46;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:90:854,90,0 chrVII 568662 . G A 685 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.27;MQ0=0;QD=22.10;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:72:718,72,0 chrVII 568669 . A T 613 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.04;MQ0=0;MQRankSum=-1.067;QD=23.58;ReadPosRankSum=1.600;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:1,25:26:63:646,63,0 chrVII 568674 . G C 520 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=22.61;SB=-6.526e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:60:553,60,0 chrVII 568734 . T G 164.64 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=2.9612;MLEAC=1;MLEAF=0.500;MQ=38.02;MQ0=0;MQRankSum=-1.044;QD=16.46;ReadPosRankSum=1.393;SB=0.547 GT:AD:DP:GQ:PL 0/1:1,9:10:5:194,0,5 chrVII 568748 . A C 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=16.51;MQ0=13;MQRankSum=1.026;QD=0.89;ReadPosRankSum=-1.026;SB=0.021 GT:AD:DP:GQ:PL 0/1:14,3:17:45:45,0,46 chrVII 574724 . T C 140.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=39.34;MQ0=0;MQRankSum=-0.975;QD=4.38;ReadPosRankSum=1.625;SB=-2.914e+01 GT:AD:DP:GQ:PL 1/1:1,31:32:18:173,18,0 chrVII 574745 . G A 415 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;QD=11.22;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:45:448,45,0 chrVII 574931 . G A 3080 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=27.50;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3113,310,0 chrVII 575122 . A G 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.013;QD=24.49;ReadPosRankSum=1.653;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3241,342,0 chrVII 575955 . C T 5013.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.84;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5013,508,0 chrVII 579120 . T C 3993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=167;Dels=0.00;FS=8.215;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.745;QD=23.91;ReadPosRankSum=2.420;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:2,162:167:99:3993,426,0 chrVII 579227 . G A 5347.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.4608;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.34;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:5347,535,0 chrVII 580178 . G T 3883.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.7713;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.12;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3883,382,0 chrVII 581805 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=33.2827;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=2;QD=20.08;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2704,268,0 chrVII 582800 . C T 1244 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1277,129,0 chrVII 584539 . T C 4318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=180;Dels=0.00;FS=2.760;HaplotypeScore=10.5028;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.659;QD=23.99;ReadPosRankSum=2.408;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:2,175:180:99:4318,448,0 chrVII 584635 . A T 2924 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=17.30;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2957,356,0 chrVII 584636 . T A 2983 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=17.65;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3016,362,0 chrVII 584683 . C G 3092 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.1994;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=18.97;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3125,333,0 chrVII 584916 . G A 3641.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.28;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3641,387,0 chrVII 585575 . C T 3107 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.0632;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.86;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3140,319,0 chrVII 585680 . A G 2695 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.19;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2728,282,0 chrVII 586087 . A G 2634 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.52;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2667,288,0 chrVII 587567 . T C 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.5838;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.512;QD=24.03;ReadPosRankSum=1.652;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4157,441,0 chrVII 587928 . T C 5068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.8841;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.065;QD=26.26;ReadPosRankSum=1.714;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:5068,523,0 chrVII 589637 . A G 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.416;QD=19.72;ReadPosRankSum=2.376;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2675,285,0 chrVII 590527 . C G 3649.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2908;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.81;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3649,376,0 chrVII 590933 . C A 3271.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3271,331,0 chrVII 591253 . C T 3674.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.87;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3674,373,0 chrVII 592123 . A T 3934.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.74;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3934,403,0 chrVII 592271 . G A 4296.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.42;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4296,430,0 chrVII 592414 . G C 4373.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.1948;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.14;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4373,457,0 chrVII 592896 . A T 4505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.735;DP=233;Dels=0.00;FS=5.750;HaplotypeScore=16.6111;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.057;QD=19.33;ReadPosRankSum=2.944;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:3,230:233:99:4505,477,0 chrVII 592944 . T A 4691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=246;Dels=0.00;FS=6.934;HaplotypeScore=18.1284;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.931;QD=19.07;ReadPosRankSum=2.390;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:2,244:246:99:4691,499,0 chrVII 592971 . T C 5347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=276;Dels=0.00;FS=3.885;HaplotypeScore=10.3688;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.898;QD=19.37;ReadPosRankSum=1.719;SB=-3.132e+03 GT:AD:DP:GQ:PL 1/1:1,273:276:99:5347,574,0 chrVII 594413 . C T 6112.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.47;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6112,613,0 chrVII 594506 . C T 4431.01 SnpCluster AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=22.84;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4431,439,0 chrVII 594509 . A T 4303.01 SnpCluster AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=22.53;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4303,433,0 chrVII 594510 . A T 4274.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=-0.750;QD=22.03;ReadPosRankSum=1.714;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4274,436,0 chrVII 596110 . T C 2342 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.52;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2375,252,0 chrVII 596486 . G T 3535.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3535,352,0 chrVII 597898 . G T 3911.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.9491;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3911,400,0 chrVII 598601 . T C 2167 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2200,231,0 chrVII 598680 . C T 2555 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.88;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2588,264,0 chrVII 599194 . T C 2427 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.67;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2460,267,0 chrVII 599246 . T C 2997 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.88;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3030,315,0 chrVII 599286 . C T 2036 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=18.4174;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.58;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,99:104:99:2069,216,0 chrVII 599373 . T G 3693.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.15;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3693,382,0 chrVII 604120 . C A 2708 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2741,271,0 chrVII 604559 . G T 3698.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.1972;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=26.04;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3698,373,0 chrVII 607810 . C T 5514.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.1808;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.97;SB=-3.060e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5514,550,0 chrVII 608268 . G A 4102.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4102,412,0 chrVII 611358 . T C 4802.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=13.6021;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.68;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,241:244:99:4802,514,0 chrVII 611746 . T C 68.22 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.731;QD=13.64;ReadPosRankSum=-0.731;SB=-4.846e+01 GT:AD:DP:GQ:PL 0/1:1,4:5:10:98,0,10 chrVII 612759 . C T 6033.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=19.8992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-3.527e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6033,607,0 chrVII 613788 . G T 5681.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=18.8560;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.25;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5681,577,0 chrVII 620294 . A C 4489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.0784;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.911;QD=22.79;ReadPosRankSum=1.714;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,193:197:99:4489,472,0 chrVII 620376 . A G 4658.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.89;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4658,484,0 chrVII 620815 . A G 3977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=159;Dels=0.00;FS=3.017;HaplotypeScore=6.3930;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.162;QD=25.01;ReadPosRankSum=2.419;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3977,415,0 chrVII 625418 . A G 6525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=13.1491;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.452;QD=20.91;ReadPosRankSum=1.923;SB=-3.585e+03 GT:AD:DP:GQ:PL 1/1:2,310:312:99:6525,694,0 chrVII 625864 . C A 4320.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4320,459,0 chrVII 626679 . G A 3936.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.36;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3936,409,0 chrVII 627920 . A G 3176 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.01;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3209,330,0 chrVII 627924 . A C 3060 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.50;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3093,318,0 chrVII 628345 . T C 5592.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-3.315e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5592,577,0 chrVII 628958 . T G 4734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.176;DP=203;Dels=0.00;FS=8.771;HaplotypeScore=22.7623;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.701;QD=23.32;ReadPosRankSum=3.400;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:4,199:203:99:4734,490,0 chrVII 630680 . G A 2417 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.86;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2450,240,0 chrVII 634321 . G T 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=124;Dels=0.00;FS=10.757;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.860;QD=21.44;ReadPosRankSum=1.372;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:3,119:124:99:2692,282,0 chrVII 634339 . G A 2789 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.2391;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.49;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2822,288,0 chrVII 634381 . C T 2918 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.27;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2951,312,0 chrVII 634480 . G A 4193.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.88;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4193,421,0 chrVII 634557 . G A 3032 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=26.14;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3065,307,0 chrVII 634640 . G A 3716.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.28;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3716,390,0 chrVII 634957 . G C 2674 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2707,285,0 chrVII 635537 . T A 82.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.75;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:115,12,0 chrVII 638787 . T C 5517.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.52;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5517,586,0 chrVII 639667 . A C 58.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.945;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=53.9019;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;MQRankSum=0.915;QD=0.89;ReadPosRankSum=2.746;SB=-5.151e+01 GT:AD:DP:GQ:PL 1/1:11,31:66:12:91,12,0 chrVII 640432 . A G 2762 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9890;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.61;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2795,294,0 chrVII 641284 . A G 6918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.486;DP=332;Dels=0.00;FS=7.891;HaplotypeScore=19.8630;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.496;QD=20.84;ReadPosRankSum=3.835;SB=-3.052e+03 GT:AD:DP:GQ:PL 1/1:5,325:332:99:6918,739,0 chrVII 642162 . G A 6729.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=12.9095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-3.766e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:6729,664,0 chrVII 642420 . T C 4207.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6385;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.80;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4207,448,0 chrVII 645493 . T G 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.013;QD=23.15;ReadPosRankSum=1.694;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4237,456,0 chrVII 645958 . G T 4951.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.2410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4951,517,0 chrVII 648054 . C T 5008.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=19.7708;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.16;SB=-3.039e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5008,514,0 chrVII 651840 . C T 8117.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=23.8135;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.29;SB=-4.411e+03 GT:AD:DP:GQ:PL 1/1:0,321:321:99:8117,806,0 chrVII 653248 . A C 878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=73;Dels=0.03;FS=2.835;HaplotypeScore=10.3657;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.998;QD=12.03;ReadPosRankSum=2.377;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:2,66:71:99:911,99,0 chrVII 653526 . A G 4624.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.59;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4624,490,0 chrVII 653653 . C T 3636.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.31;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3636,384,0 chrVII 653750 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=25.41;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3532,361,0 chrVII 654783 . T C 4184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=3.610;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.410;QD=22.37;ReadPosRankSum=1.713;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4184,444,0 chrVII 656248 . T G 3346.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.8807;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3346,340,0 chrVII 656413 . G T 3943.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=27.38;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3943,403,0 chrVII 656497 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.29;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3496,366,0 chrVII 656911 . T C 3093 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.16;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3126,330,0 chrVII 657040 . C G 3382.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=24.69;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3382,360,0 chrVII 657221 . G A 1569 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=12.07;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1602,162,0 chrVII 657229 . G A 1664 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=12.90;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1697,183,0 chrVII 657389 . G A 2544 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.51;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2577,261,0 chrVII 657546 . T C 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.293;QD=24.71;ReadPosRankSum=1.705;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3245,342,0 chrVII 661442 . C G 1397 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.53;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1430,150,0 chrVII 661473 . T C 1325 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.72;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1358,141,0 chrVII 661475 . G A 1362 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=21.28;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1395,147,0 chrVII 661628 . C T 2154 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.16;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2187,219,0 chrVII 661734 . T C 1832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=105;Dels=0.01;FS=2.922;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-0.959;QD=17.45;ReadPosRankSum=2.379;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1865,222,0 chrVII 661735 . C T 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=107;Dels=0.01;FS=3.777;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=1.237;QD=17.14;ReadPosRankSum=1.600;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:1867,222,0 chrVII 663236 . C A 3474.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.1892;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.73;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3474,346,0 chrVII 664995 . G A 4637.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4637,460,0 chrVII 665714 . G A 4255.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.7555;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.51;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4255,424,0 chrVII 668528 . C T 4172.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.6442;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.40;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4172,430,0 chrVII 668812 . G A 3868.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.5934;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.79;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3868,405,0 chrVII 670080 . G C 1995 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.91;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2028,213,0 chrVII 670886 . A C 4882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=205;Dels=0.00;FS=3.161;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.279;QD=23.81;ReadPosRankSum=1.698;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4882,525,0 chrVII 672695 . G A 7293.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=9.8720;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=28.60;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:0,253:255:99:7293,721,0 chrVII 673929 . A G 5254.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.4938;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5254,553,0 chrVII 682394 . C T 2070 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2103,222,0 chrVII 683391 . A T 3143 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.81;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3176,316,0 chrVII 684802 . T C 4111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=4.580;HaplotypeScore=9.8480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.389;QD=22.71;ReadPosRankSum=1.674;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:4111,447,0 chrVII 686644 . T A 1580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.200;DP=70;Dels=0.00;FS=8.584;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.235;QD=22.57;ReadPosRankSum=2.379;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1613,162,0 chrVII 688202 . C T 3874.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3874,388,0 chrVII 689454 . A G 5062.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.7017;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.31;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:5062,535,0 chrVII 690131 . C T 3902.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7590;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.73;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3902,391,0 chrVII 697548 . G A 3546.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.9604;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3546,355,0 chrVII 700472 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2290,237,0 chrVII 701124 . T C 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.810;DP=124;Dels=0.00;FS=8.796;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.110;QD=25.19;ReadPosRankSum=1.110;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:3156,309,0 chrVII 702818 . A T 4315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=5.010;HaplotypeScore=10.0121;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.907;QD=25.68;ReadPosRankSum=1.670;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4315,433,0 chrVII 704238 . T C 3341.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3341,360,0 chrVII 705215 . C T 1414 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1447,147,0 chrVII 712545 . A T 71.09 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;DP=9;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.18;MQ0=0;MQRankSum=0.751;QD=7.90;ReadPosRankSum=-0.751;SB=-2.967e+00 GT:AD:DP:GQ:PL 0/1:1,8:9:14:101,0,14 chrVII 714658 . A G 4765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=3.346;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.677;QD=25.35;ReadPosRankSum=1.695;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4765,508,0 chrVII 715352 . T C 1819 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1852,198,0 chrVII 719360 . A T 4109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.229;DP=169;Dels=0.00;FS=14.826;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.508;QD=24.31;ReadPosRankSum=3.365;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:4,164:169:99:4109,421,0 chrVII 720024 . T A 2570 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.96;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2603,261,0 chrVII 721916 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.4585;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3911,406,0 chrVII 722662 . T A 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=149;Dels=0.00;FS=3.471;HaplotypeScore=10.5300;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.569;QD=25.76;ReadPosRankSum=-0.872;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3838,379,0 chrVII 724567 . C T 3948.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3948,420,0 chrVII 724918 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.74;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2386,237,0 chrVII 725630 . C T 7454.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=21.5210;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.68;SB=-3.289e+03 GT:AD:DP:GQ:PL 1/1:0,299:301:99:7454,739,0 chrVII 729374 . T C 5207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=226;Dels=0.00;FS=3.291;HaplotypeScore=13.1491;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.670;QD=23.04;ReadPosRankSum=1.670;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:1,223:226:99:5207,544,0 chrVII 730604 . T C 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.559;QD=25.27;ReadPosRankSum=1.704;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3166,333,0 chrVII 734668 . A T 4785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.7114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.060;QD=23.57;ReadPosRankSum=1.698;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4785,475,0 chrVII 737189 . C A 4185.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.62;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4185,415,0 chrVII 738799 . T C 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.412;QD=24.42;ReadPosRankSum=1.705;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3208,336,0 chrVII 740786 . C T 8602.01 filter AC=2;AF=1.00;AN=2;DP=361;Dels=0.00;FS=0.000;HaplotypeScore=26.7647;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.83;SB=-4.352e+03 GT:AD:DP:GQ:PL 1/1:0,359:361:99:8602,874,0 chrVII 741068 . C T 5046.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.10;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:5046,508,0 chrVII 744731 . G A 4229.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8062;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.02;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4229,427,0 chrVII 745588 . G A 2778 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2811,294,0 chrVII 748014 . A G 4326.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4326,448,0 chrVII 748214 . G A 3656.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.99;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3656,384,0 chrVII 748310 . A G 3598.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3598,381,0 chrVII 748756 . C T 2644 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2677,268,0 chrVII 748979 . T C 3518.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3518,375,0 chrVII 749782 . T C 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=172;Dels=0.00;FS=2.928;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.797;QD=22.56;ReadPosRankSum=2.363;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3880,403,0 chrVII 752126 . G A 3128 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.64;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3161,316,0 chrVII 755348 . T C 2505 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.86;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2538,261,0 chrVII 755736 . C A 4572.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.12;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4572,484,0 chrVII 756533 . C T 4699.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.9501;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4699,484,0 chrVII 764130 . G A 1172.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.924;DP=242;Dels=0.00;FS=110.879;HaplotypeScore=16.5906;MLEAC=1;MLEAF=0.500;MQ=42.02;MQ0=18;MQRankSum=-7.482;QD=4.84;ReadPosRankSum=-1.836;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:157,84:242:99:1202,0,3181 chrVII 764689 . A G 1966.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.265;DP=454;Dels=0.00;FS=10.490;HaplotypeScore=31.5391;MLEAC=1;MLEAF=0.500;MQ=22.27;MQ0=102;MQRankSum=-0.156;QD=4.33;ReadPosRankSum=1.849;SB=-7.910e+02 GT:AD:DP:GQ:PL 0/1:238,213:454:99:1996,0,2148 chrVII 764701 . A G 1742.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.991;DP=427;Dels=0.00;FS=3.185;HaplotypeScore=18.6341;MLEAC=1;MLEAF=0.500;MQ=21.86;MQ0=114;MQRankSum=-0.508;QD=4.08;ReadPosRankSum=1.749;SB=-9.090e+02 GT:AD:DP:GQ:PL 0/1:218,207:427:99:1772,0,2132 chrVII 764935 . C T 727.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684;DP=269;Dels=0.00;FS=164.693;HaplotypeScore=10.4307;MLEAC=1;MLEAF=0.500;MQ=41.23;MQ0=46;MQRankSum=-2.765;QD=2.70;ReadPosRankSum=2.852;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:187,81:269:99:757,0,3534 chrVII 764998 . T A 136.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.767;DP=262;Dels=0.00;FS=144.389;HaplotypeScore=29.2546;MLEAC=1;MLEAF=0.500;MQ=54.61;MQ0=0;MQRankSum=-6.643;QD=0.52;ReadPosRankSum=2.735;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:217,44:262:99:166,0,4433 chrVII 765663 . A G 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.946;QD=21.98;ReadPosRankSum=1.696;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2165,231,0 chrVII 766068 . A G 4135.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.17;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:4135,424,0 chrVII 767344 . C T 4225.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4225,442,0 chrVII 769748 . A C 4413.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.93;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4413,460,0 chrVII 771837 . A G 3541.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.11;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3541,378,0 chrVII 779852 . C T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.2394;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.73;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3499,352,0 chrVII 780075 . A T 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.5921;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.795;QD=25.32;ReadPosRankSum=1.704;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3122,313,0 chrVII 783183 . G A 5303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=205;Dels=0.00;FS=4.340;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.336;QD=25.87;ReadPosRankSum=0.801;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:1,200:205:99:5303,556,0 chrVII 784494 . A G 4686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=201;Dels=0.00;FS=5.212;HaplotypeScore=5.9314;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.678;QD=23.31;ReadPosRankSum=2.905;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:3,197:201:99:4686,496,0 chrVII 785199 . C T 2742 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.44;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2775,291,0 chrVII 785343 . G A 350 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=93.5615;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=2.87;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:42:383,42,0 chrVII 785539 . G A 2706 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.5718;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.93;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2739,274,0 chrVII 785665 . A G 5042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=204;Dels=0.00;FS=14.513;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.157;QD=24.72;ReadPosRankSum=2.914;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:3,196:204:99:5042,520,0 chrVII 785945 . G T 6819.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=12.9306;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.44;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,277:278:99:6819,679,0 chrVII 786402 . C T 8453.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=365;Dels=0.00;FS=3.083;HaplotypeScore=27.6454;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.019;QD=23.16;ReadPosRankSum=1.722;SB=-5.136e+03 GT:AD:DP:GQ:PL 1/1:1,361:365:99:8453,826,0 chrVII 786669 . A G 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=222;Dels=0.00;FS=3.050;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.572;QD=20.64;ReadPosRankSum=1.716;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:1,217:222:99:4583,498,0 chrVII 786698 . A G 5115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.745;DP=235;Dels=0.00;FS=4.009;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-0.552;QD=21.77;ReadPosRankSum=1.967;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:5,227:235:99:5115,526,0 chrVII 786726 . A G 4762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=231;Dels=0.00;FS=8.576;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.774;QD=20.61;ReadPosRankSum=2.407;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:2,228:231:99:4762,502,0 chrVII 786733 . C T 4753.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.12;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4753,478,0 chrVII 786858 . A C 4261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.719;QD=22.66;ReadPosRankSum=1.695;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4261,451,0 chrVII 786976 . C A 3619.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=26.04;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3619,370,0 chrVII 787089 . C T 2008 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2041,204,0 chrVII 787546 . C T 3639.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.16;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3639,367,0 chrVII 787750 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.35;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3575,355,0 chrVII 788249 . A T 4922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.097;DP=209;Dels=0.00;FS=8.823;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-0.276;QD=23.55;ReadPosRankSum=2.414;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4922,496,0 chrVII 788427 . A G 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-1.408;QD=22.35;ReadPosRankSum=1.712;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3822,420,0 chrVII 788486 . T A 4346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.723;DP=207;Dels=0.00;FS=16.073;HaplotypeScore=159.6109;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;MQRankSum=2.160;QD=21.00;ReadPosRankSum=2.840;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:4346,442,0 chrVII 788497 . T A,C 238.03 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=5.315;HaplotypeScore=2.5173;MLEAC=1,1;MLEAF=0.500,0.500;MQ=46.62;MQ0=0;MQRankSum=-0.755;QD=1.22;ReadPosRankSum=1.697;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/2:1,178,16:195:50:298,221,212,77,0,50 chrVII 788504 . T G 303.33 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.245;DP=207;Dels=0.00;FS=1.514;HaplotypeScore=8.9850;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;MQRankSum=-0.677;QD=1.47;ReadPosRankSum=4.298;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:7,200:207:14:336,14,0 chrVII 788558 . T C 4412.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.11;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4412,471,0 chrVII 788665 . A G 3882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=3.965;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.980;QD=25.54;ReadPosRankSum=1.709;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3882,411,0 chrVII 788938 . A G 1696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=76;Dels=0.00;FS=11.409;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.862;QD=22.32;ReadPosRankSum=2.382;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:2,72:76:99:1729,180,0 chrVII 788947 . C T 1712 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.53;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1745,180,0 chrVII 789015 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.13;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3025,304,0 chrVII 789158 . T C 3379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=1.399;QD=24.85;ReadPosRankSum=1.655;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3379,349,0 chrVII 789213 . C T 4193.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=25.88;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4193,418,0 chrVII 789273 . A G 3751.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.52;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3751,393,0 chrVII 789318 . G A 3029 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.66;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3062,313,0 chrVII 789345 . C T 3005 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=5.0544;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.48;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3038,321,0 chrVII 789498 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3516,355,0 chrVII 789789 . T C 4210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=180;Dels=0.00;FS=4.491;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.655;QD=23.39;ReadPosRankSum=1.694;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4210,445,0 chrVII 789939 . C T 2517 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2550,264,0 chrVII 789975 . A G 2545 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2578,270,0 chrVII 790041 . A G 3520.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.79;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3520,375,0 chrVII 790122 . G A 3524.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.3814;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.17;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3524,346,0 chrVII 790684 . A G 4612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=3.664;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.803;QD=25.77;ReadPosRankSum=1.693;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4612,481,0 chrVII 790861 . C T 5455.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=24.91;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5455,544,0 chrVII 790909 . T C 4315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=0.528;QD=20.55;ReadPosRankSum=1.666;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4315,451,0 chrVII 790915 . G A 4436.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.92;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4436,460,0 chrVII 791092 . A T 4407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.050;DP=209;Dels=0.00;FS=2.896;HaplotypeScore=14.3395;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.780;QD=21.09;ReadPosRankSum=2.414;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4407,466,0 chrVII 791316 . T A 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.728;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.227;QD=22.76;ReadPosRankSum=1.617;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3436,343,0 chrVII 791734 . T C 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.117;QD=22.15;ReadPosRankSum=1.668;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3654,379,0 chrVII 791799 . G A 4255.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4762;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.31;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4255,430,0 chrVII 791887 . C T 3421.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.79;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3421,343,0 chrVII 791920 . A G 3364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=150;Dels=0.00;FS=5.427;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.345;QD=22.43;ReadPosRankSum=2.939;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:3364,351,0 chrVII 792001 . T G 2985 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3018,321,0 chrVII 792094 . C T 3056 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.12;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:3089,310,0 chrVII 792224 . G C 2387 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.17;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2420,252,0 chrVII 792484 . A T 3675.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.83;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3675,375,0 chrVII 792731 . G A 2955 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2988,309,0 chrVII 792997 . A C 4320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=173;Dels=0.00;FS=4.381;HaplotypeScore=10.3238;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-1.243;QD=24.97;ReadPosRankSum=1.691;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4320,457,0 chrVII 793207 . C A 4136.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.43;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4136,430,0 chrVII 793218 . G A 4066.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.54;SB=-2.789e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4066,406,0 chrVII 793300 . C T 4519.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.6532;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=22.94;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4519,454,0 chrVII 793301 . A T 4530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=3.304;HaplotypeScore=3.6532;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=0.618;QD=22.76;ReadPosRankSum=1.680;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4530,451,0 chrVII 793585 . G C 4585.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=24.26;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4585,487,0 chrVII 793612 . A C 4945.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.5357;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=24.60;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4945,520,0 chrVII 793703 . A G 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8851;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=0.046;QD=22.70;ReadPosRankSum=1.687;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3450,369,0 chrVII 793785 . T C 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=131;Dels=0.00;FS=4.478;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=1.437;QD=22.44;ReadPosRankSum=1.705;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2972,315,0 chrVII 793906 . C T 677 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.1441;MLEAC=2;MLEAF=1.00;MQ=36.87;MQ0=0;QD=5.13;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:75:710,75,0 chrVII 793952 . G A 2625 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=21.00;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2658,276,0 chrVII 794027 . C T 3138 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=21.79;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3171,324,0 chrVII 794041 . T C 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;MQRankSum=-0.103;QD=20.79;ReadPosRankSum=1.709;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3173,333,0 chrVII 794286 . T C 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=121;Dels=0.00;FS=3.585;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-0.129;QD=23.21;ReadPosRankSum=1.675;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2841,306,0 chrVII 794396 . C T 1743 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.55;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1776,171,0 chrVII 794497 . A G 837 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=43.7518;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=14.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:93:870,93,0 chrVII 794535 . C T 492 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.3868;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=14.06;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,34:35:57:525,57,0 chrVII 794605 . A G 559 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=23.29;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:63:592,63,0 chrVII 794614 . C A 577 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=25.09;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:60:610,60,0 chrVII 794620 . C T 551 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.96;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:60:584,60,0 chrVII 794838 . A G 2490 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.65;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2523,264,0 chrVII 794890 . C T 4728.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=25.56;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4728,478,0 chrVII 794912 . C T 5249.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=25.24;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5249,532,0 chrVII 794971 . T C 4651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.849;QD=22.15;ReadPosRankSum=1.699;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:1,207:210:99:4651,501,0 chrVII 795142 . C T 4145.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=23.42;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4145,412,0 chrVII 795163 . T C 3668.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.20;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3668,387,0 chrVII 795193 . G A 4063.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.16;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4063,418,0 chrVII 795501 . A G 3725.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.99;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3725,385,0 chrVII 795589 . T C 5169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=203;Dels=0.00;FS=3.322;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.646;QD=25.46;ReadPosRankSum=1.698;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:5169,547,0 chrVII 795876 . T G 3002 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.02;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3035,312,0 chrVII 795956 . T C 4162.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.6850;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.45;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4162,427,0 chrVII 796208 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=159;Dels=0.00;FS=7.304;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.399;QD=23.28;ReadPosRankSum=2.309;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3702,385,0 chrVII 796217 . T G 3794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-1.710;QD=23.71;ReadPosRankSum=1.624;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3794,385,0 chrVII 796263 . A G 3979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=186;Dels=0.00;FS=3.005;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=1.228;QD=21.39;ReadPosRankSum=2.370;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:3979,432,0 chrVII 796304 . G A 4987.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=19.0072;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.09;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4987,523,0 chrVII 796413 . G T 4106.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5454;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.73;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4106,409,0 chrVII 796516 . A G 5185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.361;DP=211;Dels=0.00;FS=8.819;HaplotypeScore=11.8353;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.968;QD=24.57;ReadPosRankSum=3.394;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:4,206:211:99:5185,544,0 chrVII 796676 . T C 3639.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.4627;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.33;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3639,384,0 chrVII 797305 . T C 3680.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.5908;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=22.72;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3680,390,0 chrVII 797326 . A G 2987 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=19.65;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3020,324,0 chrVII 797329 . C T 2936 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.94;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2969,315,0 chrVII 797667 . G A 2818 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.29;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2851,286,0 chrVII 797697 . G T 2851 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.37;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2884,289,0 chrVII 797776 . A G 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.436;QD=25.39;ReadPosRankSum=1.653;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3326,346,0 chrVII 797870 . G C 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.6374;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.206;QD=24.62;ReadPosRankSum=0.734;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:1,124:128:99:3184,312,0 chrVII 797989 . C T 4450.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0949;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=26.49;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4450,451,0 chrVII 798046 . T C 4989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=211;Dels=0.00;FS=5.518;HaplotypeScore=13.8182;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.948;QD=23.64;ReadPosRankSum=2.938;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:3,208:211:99:4989,520,0 chrVII 798183 . C A 5054.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.3761;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=24.77;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5054,496,0 chrVII 798196 . A G 4345.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.6739;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.20;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4345,462,0 chrVII 798399 . T C 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=169;Dels=0.00;FS=3.036;HaplotypeScore=9.0308;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.358;QD=24.05;ReadPosRankSum=2.347;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:4065,441,0 chrVII 799244 . T C 4245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=184;Dels=0.00;FS=3.816;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.407;QD=23.07;ReadPosRankSum=1.713;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4245,451,0 chrVII 799451 . C T 6385.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=13.0331;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.28;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:6385,640,0 chrVII 799595 . A G 5964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=18.6918;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.646;QD=20.78;ReadPosRankSum=1.611;SB=-2.902e+03 GT:AD:DP:GQ:PL 1/1:1,286:287:99:5964,640,0 chrVII 799613 . G A 5944.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.52;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:5944,607,0 chrVII 799904 . C T 4052.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.66;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:4052,409,0 chrVII 800053 . G A 3918.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.12;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3918,388,0 chrVII 800250 . T C 3059 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.8839;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.35;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3092,327,0 chrVII 801370 . C T 4371.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4371,459,0 chrVII 801604 . C T 4195.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4195,415,0 chrVII 801751 . T C 3710.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.78;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3710,402,0 chrVII 802060 . G T 3673.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.1227;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.16;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3673,387,0 chrVII 802496 . G A 3147 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=25.38;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3180,319,0 chrVII 802512 . G A 3070 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=24.56;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3103,313,0 chrVII 802532 . T C 2381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=6.723;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.906;QD=21.45;ReadPosRankSum=2.360;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2414,255,0 chrVII 802550 . A G 2319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7574;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.456;QD=20.34;ReadPosRankSum=1.702;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2352,252,0 chrVII 802619 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4600;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.51;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3603,378,0 chrVII 802712 . G A 3533.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.24;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3533,355,0 chrVII 802784 . A G 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=130;Dels=0.00;FS=9.974;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=0.930;QD=22.52;ReadPosRankSum=2.807;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2961,321,0 chrVII 802790 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.86;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3051,307,0 chrVII 802832 . G T 2827 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.36;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2860,300,0 chrVII 803009 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.168;QD=25.44;ReadPosRankSum=1.629;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3434,363,0 chrVII 803036 . T A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=25.65;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3283,331,0 chrVII 803156 . C T 4490.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.5993;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.37;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4490,451,0 chrVII 803574 . A G 4605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=194;Dels=0.00;FS=2.576;HaplotypeScore=9.8618;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.772;QD=23.74;ReadPosRankSum=2.933;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:4605,481,0 chrVII 803618 . T C 3607.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.86;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3607,393,0 chrVII 803660 . G A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.25;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3484,352,0 chrVII 803802 . C T 2652 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.3066;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.67;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2685,276,0 chrVII 803825 . T C 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=118;Dels=0.00;FS=2.880;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-1.777;QD=22.32;ReadPosRankSum=2.408;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2667,279,0 chrVII 803918 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.17;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3498,355,0 chrVII 803987 . C T 3285.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8991;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.28;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3285,325,0 chrVII 804353 . T C 3442.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.3766;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.12;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3442,360,0 chrVII 804429 . G A 2932 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=24.23;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2965,289,0 chrVII 804452 . T C 2556 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.66;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2589,276,0 chrVII 804767 . T C 4839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.117;QD=24.94;ReadPosRankSum=1.678;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4839,505,0 chrVII 804812 . A G 4268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=172;Dels=0.00;FS=6.627;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.659;QD=24.81;ReadPosRankSum=2.421;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:4268,456,0 chrVII 804950 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.99;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3356,337,0 chrVII 805132 . A C 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.457;DP=88;Dels=0.00;FS=6.021;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.512;QD=24.60;ReadPosRankSum=1.102;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2198,234,0 chrVII 805202 . G A 2614 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=26.40;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2647,270,0 chrVII 805410 . G T 4748.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.5485;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.83;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4748,487,0 chrVII 805540 . A G 5768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=251;Dels=0.00;FS=2.715;HaplotypeScore=16.6130;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.684;QD=22.98;ReadPosRankSum=2.391;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:2,248:251:99:5768,619,0 chrVII 805619 . T G 6277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=261;Dels=0.00;FS=4.047;HaplotypeScore=15.6215;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.304;QD=24.05;ReadPosRankSum=1.625;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:1,258:261:99:6277,655,0 chrVII 805798 . G C 6461.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=15.1407;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.84;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:0,245:250:99:6461,658,0 chrVII 806101 . G T 3976.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3976,397,0 chrVII 806778 . A G 5923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=283;Dels=0.00;FS=5.937;HaplotypeScore=27.4538;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.617;QD=20.93;ReadPosRankSum=2.896;SB=-3.257e+03 GT:AD:DP:GQ:PL 1/1:3,277:283:99:5923,648,0 chrVII 806826 . A G 4478.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.54;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:4478,480,0 chrVII 806961 . C T 4808.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.8183;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.47;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4808,484,0 chrVII 807206 . C T 4990.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.0845;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.43;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4990,508,0 chrVII 807574 . A G 4948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=202;Dels=0.00;FS=2.886;HaplotypeScore=14.0756;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.519;QD=24.50;ReadPosRankSum=2.413;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4948,511,0 chrVII 807662 . T A 4387.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=24.79;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4387,457,0 chrVII 807712 . G A 4285.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.35;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4285,445,0 chrVII 807765 . G T 3533.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.53;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3533,361,0 chrVII 807906 . C T 1387 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=20.5542;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=12.38;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,102:112:99:1420,147,0 chrVII 807938 . G A 2692 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=23.61;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2725,271,0 chrVII 807996 . A G 2653 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=21.40;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,120:124:99:2686,291,0 chrVII 808049 . G A 1971 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;QD=15.28;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2004,213,0 chrVII 808061 . G A 1913 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.21;MQ0=0;QD=13.96;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1946,201,0 chrVII 808065 . T G 1808 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=38.78;MQ0=0;QD=12.56;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:1841,201,0 chrVII 808074 . A G 1727 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.09;MQ0=0;QD=12.08;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:1760,186,0 chrVII 808093 . C G 2218 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;QD=14.69;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2251,234,0 chrVII 808199 . G T 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.236;DP=111;Dels=0.00;FS=2.903;HaplotypeScore=6.2421;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=1.242;QD=19.64;ReadPosRankSum=2.112;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:4,107:111:99:2213,252,0 chrVII 808200 . A G 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.690;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=8.9872;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=0.434;QD=19.34;ReadPosRankSum=3.619;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:5,106:111:99:2199,252,0 chrVII 808247 . T C 2271 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.4017;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=19.75;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2304,249,0 chrVII 808336 . T C 1524 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4402;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=19.05;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1557,174,0 chrVII 808348 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=23.06;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1463,150,0 chrVII 808482 . T G 33.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.927;QD=1.48;ReadPosRankSum=2.237;SB=-2.998e+01 GT:AD:DP:GQ:PL 1/1:2,21:23:9:66,9,0 chrVII 808622 . T C 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.335;QD=25.41;ReadPosRankSum=1.704;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3133,327,0 chrVII 808820 . G A 5653.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=19.0127;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.86;SB=-3.064e+03 GT:AD:DP:GQ:PL 1/1:2,265:271:99:5653,586,0 chrVII 809363 . C T 4094.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4094,430,0 chrVII 809504 . T C 4987.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.0756;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.75;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4987,526,0 chrVII 810028 . A C 5676.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.05;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,232:236:99:5676,598,0 chrVII 810308 . A G 7019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.721;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=12.9432;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.711;QD=21.33;ReadPosRankSum=1.700;SB=-4.039e+03 GT:AD:DP:GQ:PL 1/1:1,326:329:99:7019,730,0 chrVII 810523 . T C 4566.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=17.2073;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.64;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4566,489,0 chrVII 810921 . T C 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=145;Dels=0.00;FS=5.883;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.599;QD=23.77;ReadPosRankSum=2.951;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:3,140:145:99:3446,360,0 chrVII 810987 . A G 4208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-0.049;QD=23.25;ReadPosRankSum=1.713;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:1,176:181:99:4208,436,0 chrVII 811099 . T C 5088.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.9397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5088,544,0 chrVII 811192 . C T 4503.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=26.33;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4503,448,0 chrVII 811300 . A G 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.6184;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.653;QD=22.03;ReadPosRankSum=2.419;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3547,372,0 chrVII 811341 . T C 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=160;Dels=0.00;FS=5.652;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=1.096;QD=22.56;ReadPosRankSum=1.710;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3609,378,0 chrVII 823409 . T G 1835 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=11.9829;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=1;QD=19.32;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1868,192,0 chrVII 823433 . T G 1294 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.828;DP=99;Dels=0.00;FS=5.783;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=41.02;MQ0=0;MQRankSum=0.759;QD=13.07;ReadPosRankSum=0.858;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1327,135,0 chrVII 823436 . C A 1292 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=39.47;MQ0=0;QD=13.32;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1325,144,0 chrVII 823442 . A T 1308 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;QD=13.77;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1341,138,0 chrVII 823443 . C G 1219 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;QD=12.70;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1252,138,0 chrVII 826395 . A G 4708.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4708,507,0 chrVII 827191 . T C 2143 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.79;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2176,228,0 chrVII 831634 . G T 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.460;QD=21.84;ReadPosRankSum=1.030;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3472,349,0 chrVII 833104 . C T 3134 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3167,313,0 chrVII 833212 . C T 2872 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2905,286,0 chrVII 833583 . A C 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=144;Dels=0.00;FS=2.887;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-1.229;QD=21.28;ReadPosRankSum=2.398;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3098,324,0 chrVII 833622 . A T 3843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.978;DP=162;Dels=0.00;FS=2.942;HaplotypeScore=9.5477;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.614;QD=23.72;ReadPosRankSum=2.389;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3843,364,0 chrVII 833760 . C G 3552.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.9115;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=24.84;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3552,387,0 chrVII 833792 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=23.46;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2942,297,0 chrVII 833796 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=23.39;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2887,294,0 chrVII 833804 . C A 2838 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=22.17;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2871,300,0 chrVII 833865 . T C 3185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=3.647;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.840;QD=24.13;ReadPosRankSum=1.706;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3218,345,0 chrVII 833973 . T C 3046 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.07;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3079,333,0 chrVII 834003 . C T 1898 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=19.17;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1931,198,0 chrVII 834032 . A T 865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.240;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=13.8021;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;MQRankSum=1.404;QD=10.81;ReadPosRankSum=1.535;SB=-8.587e+02 GT:AD:DP:GQ:PL 1/1:10,70:80:93:898,93,0 chrVII 834033 . A T 891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.752;DP=81;Dels=0.00;FS=2.087;HaplotypeScore=13.8021;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;MQRankSum=1.515;QD=11.00;ReadPosRankSum=2.430;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:4,77:81:93:924,93,0 chrVII 834078 . G A 1890 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.48;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1923,195,0 chrVII 834267 . G A 2970 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.57;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:3003,318,0 chrVII 834413 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.80;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3671,370,0 chrVII 834852 . C T 3503.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.8496;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.67;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3503,355,0 chrVII 834928 . T C 4964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=202;Dels=0.00;FS=2.979;HaplotypeScore=15.6865;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.068;QD=24.57;ReadPosRankSum=2.376;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:2,198:202:99:4964,514,0 chrVII 834962 . C T 5278.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.13;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5278,523,0 chrVII 835147 . T C 4986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=201;Dels=0.00;FS=10.780;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.583;QD=24.81;ReadPosRankSum=2.965;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:4986,517,0 chrVII 835244 . C T 6471.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.51;SB=-3.024e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:6471,655,0 chrVII 835436 . T G 5393.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=16.2135;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.55;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:5393,562,0 chrVII 836049 . C T 4937.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.71;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4937,505,0 chrVII 836625 . G A 2311 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2344,234,0 chrVII 837909 . C T 3896.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=15.1541;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.35;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3896,406,0 chrVII 842206 . T C 4014.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.1271;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.09;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4014,424,0 chrVII 843110 . G A 3424.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.3204;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,140:144:99:3424,346,0 chrVII 843390 . G C 4386.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.80;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4386,460,0 chrVII 844261 . A C 3856.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.04;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3856,403,0 chrVII 845614 . C A 1062 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:1095,111,0 chrVII 846529 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.61;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3300,328,0 chrVII 847458 . A G 5938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=272;Dels=0.00;FS=3.007;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.735;QD=21.83;ReadPosRankSum=2.413;SB=-3.480e+03 GT:AD:DP:GQ:PL 1/1:2,270:272:99:5938,625,0 chrVII 847512 . A G 6218.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=21.6290;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.05;SB=-2.963e+03 GT:AD:DP:GQ:PL 1/1:0,278:282:99:6218,670,0 chrVII 847569 . A G 5875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=18.3153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.869;QD=22.86;ReadPosRankSum=1.691;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:1,252:257:99:5875,610,0 chrVII 848849 . C T 6752.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=18.3186;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.58;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:6752,685,0 chrVII 849134 . C G 5288.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.41;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5288,567,0 chrVII 850923 . T C 1706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-1.451;QD=22.45;ReadPosRankSum=1.639;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1739,180,0 chrVII 851062 . G A 4841.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.6166;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.95;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4841,519,0 chrVII 851197 . T G 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.9885;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.589;QD=23.43;ReadPosRankSum=1.660;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4498,486,0 chrVII 851491 . A G 5179.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=20.63;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5179,544,0 chrVII 851656 . C G 4194.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.0787;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.43;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4194,444,0 chrVII 851746 . G A 3666.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.5057;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=25.64;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3666,370,0 chrVII 851801 . A G 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=142;Dels=0.00;FS=3.036;HaplotypeScore=7.2560;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.469;QD=23.50;ReadPosRankSum=2.326;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:2,137:142:99:3337,354,0 chrVII 851827 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.5110;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.35;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3150,318,0 chrVII 851899 . T C 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=4.187;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=1.009;QD=19.69;ReadPosRankSum=1.707;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2770,294,0 chrVII 851923 . C A 2692 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.94;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2725,276,0 chrVII 851981 . C T 2781 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.90;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,123:127:99:2814,280,0 chrVII 852002 . A G 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=123;Dels=0.00;FS=3.011;HaplotypeScore=4.0215;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-1.350;QD=22.49;ReadPosRankSum=2.390;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2799,297,0 chrVII 852034 . A G 2523 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.85;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2556,270,0 chrVII 852133 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=25.11;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2996,301,0 chrVII 852310 . C T 3761.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.9465;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.74;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3761,391,0 chrVII 852497 . T C 4731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.1763;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.613;QD=24.14;ReadPosRankSum=1.697;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4731,487,0 chrVII 853006 . T A 4593.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4593,466,0 chrVII 853120 . T C 3121 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:3154,324,0 chrVII 853279 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.18;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3291,351,0 chrVII 853535 . A G 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=132;Dels=0.00;FS=7.518;HaplotypeScore=8.0027;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-1.182;QD=19.09;ReadPosRankSum=2.412;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2553,276,0 chrVII 853758 . C T 4440.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.00;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4440,448,0 chrVII 853870 . A G 4284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=3.310;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.252;QD=21.75;ReadPosRankSum=1.697;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4284,456,0 chrVII 854194 . G A 3512.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=26.61;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3512,355,0 chrVII 854240 . C A 2970 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.76;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3003,312,0 chrVII 854257 . C T 2944 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.93;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2977,298,0 chrVII 854692 . C T 4464.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.89;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4464,451,0 chrVII 854779 . G A 3723.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=16.5869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3723,388,0 chrVII 854830 . G A 4137.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.86;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4137,430,0 chrVII 854905 . G C 3593.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.95;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3593,370,0 chrVII 855067 . C T 1856 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1889,189,0 chrVII 855163 . T C 283 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=14.89;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,17:19:33:316,33,0 chrVII 855164 . T C 281 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=16.53;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,15:17:33:314,33,0 chrVII 855417 . G A 2173 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.69;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2206,240,0 chrVII 855821 . C T 6966.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-3.145e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:6966,688,0 chrVII 856537 . A G 4288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=5.051;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=1.472;QD=26.63;ReadPosRankSum=1.710;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:4288,448,0 chrVII 857160 . C T 3627.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.36;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3627,358,0 chrVII 857340 . G C 4199.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.58;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4199,436,0 chrVII 857688 . A G 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.107;DP=141;Dels=0.00;FS=2.476;HaplotypeScore=7.8902;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.679;QD=22.09;ReadPosRankSum=1.593;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:3147,319,0 chrVII 857780 . G A 3929.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=21.95;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3929,391,0 chrVII 857788 . C T 3937.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.19;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3937,397,0 chrVII 857836 . C T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.3811;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=18.51;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3553,372,0 chrVII 857876 . A C 4016.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.9968;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.36;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4016,424,0 chrVII 857963 . T C 3108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.409;DP=174;Dels=0.00;FS=14.026;HaplotypeScore=6.4784;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-0.894;QD=17.86;ReadPosRankSum=3.167;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:4,169:174:99:3141,366,0 chrVII 857965 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.01;FS=0.000;HaplotypeScore=5.6898;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.36;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3088,360,0 chrVII 858001 . G C 3960.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=22.76;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3960,415,0 chrVII 858110 . C T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.33;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3647,361,0 chrVII 858225 . G T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=25.96;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3972,403,0 chrVII 858261 . C A 4331.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.1892;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=26.09;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:4331,439,0 chrVII 858310 . C T 4056.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=27.59;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4056,409,0 chrVII 858478 . G C 5048.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.0709;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.39;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,203:207:99:5048,523,0 chrVII 858511 . C T 4653.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.6181;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.02;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4653,463,0 chrVII 858611 . C A 2442 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.02;FS=0.000;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.61;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2475,252,0 chrVII 858672 . C T 99.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.217;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.785;QD=0.78;ReadPosRankSum=0.000;SB=-4.773e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:15:132,15,0 chrVII 858803 . A T 1523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=69;Dels=0.03;FS=0.000;HaplotypeScore=52.5612;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=0.801;QD=22.07;ReadPosRankSum=1.681;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1556,159,0 chrVII 859016 . A G 3391.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=26.08;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3391,349,0 chrVII 859075 . G A 2686 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.0839;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=21.49;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2719,276,0 chrVII 859306 . G T 4318.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.9582;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=23.09;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4318,445,0 chrVII 859310 . C T 4187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-0.876;QD=23.39;ReadPosRankSum=1.207;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4187,430,0 chrVII 859352 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=181;Dels=0.00;FS=4.188;HaplotypeScore=11.1517;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.603;QD=21.81;ReadPosRankSum=1.694;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3948,426,0 chrVII 859418 . C A 3750.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=20.83;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3750,379,0 chrVII 859422 . G A 3959.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=21.40;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3959,394,0 chrVII 859580 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=23.35;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3853,408,0 chrVII 859584 . C T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=23.66;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3785,379,0 chrVII 859719 . T C 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=114;Dels=0.00;FS=6.021;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.650;QD=21.68;ReadPosRankSum=1.701;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2504,255,0 chrVII 859804 . A G 1977 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=20.38;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2010,210,0 chrVII 859808 . T G 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=92;Dels=0.00;FS=5.014;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;MQRankSum=0.188;QD=19.74;ReadPosRankSum=1.694;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1849,195,0 chrVII 859825 . A G 1512 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=20.43;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1545,162,0 chrVII 860213 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.83;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3246,342,0 chrVII 860477 . A G 4325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.092;QD=25.59;ReadPosRankSum=1.650;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4325,457,0 chrVII 860513 . T C 3870.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=24.19;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3870,414,0 chrVII 860534 . A G 3632.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=23.43;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3632,384,0 chrVII 860594 . G A 3324.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.58;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3324,346,0 chrVII 860672 . C A 3601.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=24.33;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3601,367,0 chrVII 860690 . A G 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=0.164;QD=21.81;ReadPosRankSum=1.682;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3021,315,0 chrVII 860732 . G A 3542.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.73;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3542,361,0 chrVII 860821 . T C 3843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-0.528;QD=23.15;ReadPosRankSum=1.711;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3843,411,0 chrVII 860831 . C A 3969.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.6622;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=24.96;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3969,394,0 chrVII 860945 . G A 4934.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.1639;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.95;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4934,514,0 chrVII 860975 . T C 4626.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.7975;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.01;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4626,487,0 chrVII 861152 . C T 5012.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.8633;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=23.31;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5012,505,0 chrVII 861190 . G C 5003.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.2791;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=24.52;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:5003,523,0 chrVII 861356 . G A 2903 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=23.60;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2936,298,0 chrVII 861401 . C T 2421 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=20.69;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2454,258,0 chrVII 861407 . A G 2368 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=21.14;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2401,252,0 chrVII 861419 . T G 1780 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=17.80;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1813,189,0 chrVII 861437 . G A 1665 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=16.65;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1698,180,0 chrVII 861475 . A G 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=4.703;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.259;QD=20.87;ReadPosRankSum=1.705;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2684,288,0 chrVII 861578 . T C 2965 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.5648;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.30;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2998,321,0 chrVII 861656 . A G 3420.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=24.96;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3420,369,0 chrVII 861773 . C T 4273.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.84;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4273,433,0 chrVII 861857 . A G 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.260;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.689;QD=24.82;ReadPosRankSum=1.689;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3996,415,0 chrVII 861908 . T C 4252.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.87;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4252,442,0 chrVII 861944 . A G 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.9244;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.150;QD=24.19;ReadPosRankSum=1.692;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4209,433,0 chrVII 861978 . C A 3957.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3957,403,0 chrVII 862016 . A G 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.354;QD=23.08;ReadPosRankSum=1.693;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4062,432,0 chrVII 862103 . A G 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=142;Dels=0.00;FS=3.004;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.462;QD=21.83;ReadPosRankSum=2.362;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3133,333,0 chrVII 862232 . T C 4626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.320;DP=187;Dels=0.00;FS=9.081;HaplotypeScore=14.0990;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.798;QD=24.74;ReadPosRankSum=3.385;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:4,183:187:99:4626,481,0 chrVII 862303 . C T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.53;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3605,358,0 chrVII 862364 . T C 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=158;Dels=0.00;FS=3.480;HaplotypeScore=11.1482;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.910;QD=22.22;ReadPosRankSum=1.710;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3511,378,0 chrVII 862491 . T C 3542.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.6510;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.61;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3542,370,0 chrVII 862544 . A G 3560.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.84;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3560,373,0 chrVII 862549 . A G 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=3.287;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.620;QD=21.89;ReadPosRankSum=1.711;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3546,367,0 chrVII 862646 . A T 3978.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.34;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3978,409,0 chrVII 862925 . G A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.7583;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.53;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3789,379,0 chrVII 862964 . G A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=16.6589;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.92;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3507,355,0 chrVII 863021 . C T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.7702;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.16;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3381,346,0 chrVII 863057 . G A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.9145;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.84;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3577,367,0 chrVII 863144 . A G 3903.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.55;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3903,423,0 chrVII 863180 . A G 3550.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=23.05;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3550,369,0 chrVII 863198 . C T 4153.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=23.60;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4153,430,0 chrVII 863249 . T C 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.584;QD=22.58;ReadPosRankSum=1.692;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3884,403,0 chrVII 863267 . T C 4111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-0.791;QD=23.36;ReadPosRankSum=1.652;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:1,172:176:99:4111,427,0 chrVII 863549 . T C 4659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=185;Dels=0.00;FS=3.015;HaplotypeScore=6.6318;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.194;QD=25.18;ReadPosRankSum=2.410;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4659,493,0 chrVII 863753 . T C 4001.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4001,418,0 chrVII 863960 . G A 4312.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4312,457,0 chrVII 864725 . T C 5103.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.78;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5103,541,0 chrVII 864758 . C T 5111.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.22;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5111,511,0 chrVII 865499 . G C 3296.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3296,342,0 chrVII 865578 . C T 4113.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=26.71;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:4113,409,0 chrVII 865622 . A G 3636.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=22.04;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3636,387,0 chrVII 865628 . T C 3595.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.6987;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=22.19;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3595,367,0 chrVII 866222 . T A 1097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=55;Dels=0.02;FS=9.542;HaplotypeScore=5.8446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.257;QD=19.95;ReadPosRankSum=1.604;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1130,117,0 chrVII 866494 . T C 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.253;QD=24.19;ReadPosRankSum=2.345;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3411,366,0 chrVII 866978 . T C 3658.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.30;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3658,385,0 chrVII 867038 . G C 3994.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.82;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3994,423,0 chrVII 867380 . C T 3953.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.10;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3953,406,0 chrVII 867732 . G A 3522.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.7141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.68;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3522,355,0 chrVII 868409 . C A 6447.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=22.7583;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.99;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,254:258:99:6447,655,0 chrVII 868460 . T C 6100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=1.125;QD=22.26;ReadPosRankSum=1.681;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:1,273:274:99:6100,634,0 chrVII 868485 . G A 6302.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=9.6977;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.29;SB=-2.850e+03 GT:AD:DP:GQ:PL 1/1:0,292:296:99:6302,643,0 chrVII 869330 . A G 4720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=198;Dels=0.00;FS=3.007;HaplotypeScore=15.1697;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.044;QD=23.84;ReadPosRankSum=2.424;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:2,193:198:99:4720,496,0 chrVII 869612 . T C 5028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=203;Dels=0.00;FS=3.054;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.406;QD=24.77;ReadPosRankSum=1.663;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:5028,535,0 chrVII 870131 . C T 1960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=84.1419;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-1.329;QD=22.27;ReadPosRankSum=-1.652;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:1,85:88:99:1993,201,0 chrVII 870646 . C T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4565;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.97;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3920,411,0 chrVII 870793 . C T 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.551;QD=23.70;ReadPosRankSum=1.168;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3090,313,0 chrVII 870885 . C T 2032 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.36;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2065,219,0 chrVII 870916 . A G 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.102;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.758;QD=25.59;ReadPosRankSum=1.696;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2490,264,0 chrVII 871006 . C T 2546 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.48;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2579,261,0 chrVII 871036 . A G 2458 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.10;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2491,258,0 chrVII 871517 . T C 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.854;QD=22.97;ReadPosRankSum=1.683;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1664,174,0 chrVII 871790 . C A 2505 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.32;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2538,258,0 chrVII 872246 . C G 2595 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2628,270,0 chrVII 873389 . T C 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=124;Dels=0.00;FS=8.911;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=1.252;QD=21.94;ReadPosRankSum=3.359;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:4,120:124:99:2754,285,0 chrVII 873392 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.90;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2666,279,0 chrVII 873474 . C T 4352.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.7336;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.45;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4352,433,0 chrVII 873790 . C T 5633.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.82;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5633,586,0 chrVII 873895 . G A 6004.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.6795;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-3.261e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:6004,604,0 chrVII 874466 . A T 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.697;DP=123;Dels=0.00;FS=9.689;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.172;QD=24.41;ReadPosRankSum=2.910;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:3036,304,0 chrVII 874608 . G A 2125 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2158,216,0 chrVII 875186 . T C 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=136;Dels=0.00;FS=8.236;HaplotypeScore=13.1835;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.750;QD=21.12;ReadPosRankSum=2.359;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2906,306,0 chrVII 875292 . C T 4465.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.58;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4465,460,0 chrVII 875496 . G A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.11;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3376,340,0 chrVII 875675 . T C 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.042;QD=24.19;ReadPosRankSum=1.704;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3032,324,0 chrVII 875748 . T C 2336 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.60;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2369,246,0 chrVII 875843 . T G 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=3.531;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=-1.006;QD=24.01;ReadPosRankSum=1.704;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:3034,327,0 chrVII 875845 . A T 3146 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=25.58;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3179,324,0 chrVII 876033 . G A 2413 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=23.89;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2446,243,0 chrVII 876057 . T C 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=114;Dels=0.00;FS=6.379;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=0.121;QD=20.74;ReadPosRankSum=2.406;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:2,110:114:99:2397,255,0 chrVII 876081 . G A 2395 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=21.97;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2428,243,0 chrVII 876387 . T C 1559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=67;Dels=0.00;FS=6.734;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-1.680;QD=23.27;ReadPosRankSum=1.680;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1592,165,0 chrVII 876560 . C T 479 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.16;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,24:25:51:512,51,0 chrVII 876569 . G A 318 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=15.14;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:36:351,36,0 chrVII 876711 . T C 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.647;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.3937;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;MQRankSum=-0.265;QD=23.27;ReadPosRankSum=4.098;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:6,122:128:99:3012,321,0 chrVII 876825 . C T 5733.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=26.79;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5733,580,0 chrVII 876915 . A G 6819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=297;Dels=0.00;FS=7.330;HaplotypeScore=8.7421;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=-0.632;QD=22.96;ReadPosRankSum=2.400;SB=-3.528e+03 GT:AD:DP:GQ:PL 1/1:2,295:297:99:6819,697,0 chrVII 876960 . T A 1305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=139;Dels=0.00;FS=20.692;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;MQRankSum=0.657;QD=9.39;ReadPosRankSum=2.876;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:3,135:139:99:1338,138,0 chrVII 877046 . A G 6625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.983;QD=23.33;ReadPosRankSum=1.695;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:1,281:284:99:6625,691,0 chrVII 877072 . A G 7473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.978;DP=319;Dels=0.00;FS=5.311;HaplotypeScore=10.2477;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-0.383;QD=23.43;ReadPosRankSum=2.965;SB=-3.439e+03 GT:AD:DP:GQ:PL 1/1:3,314:319:99:7473,772,0 chrVII 877212 . A G 231.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.771;DP=70;Dels=0.00;FS=22.143;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=38.50;MQ0=0;MQRankSum=1.647;QD=3.30;ReadPosRankSum=-6.776;SB=-2.520e+02 GT:AD:DP:GQ:PL 0/1:26,44:70:99:261,0,126 chrVII 877222 . A G 232.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.454;DP=81;Dels=0.00;FS=11.494;HaplotypeScore=276.4213;MLEAC=1;MLEAF=0.500;MQ=29.63;MQ0=0;MQRankSum=1.918;QD=2.86;ReadPosRankSum=-3.484;SB=-2.170e+02 GT:AD:DP:GQ:PL 0/1:48,33:81:99:262,0,128 chrVII 877236 . A G 434.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;DP=108;Dels=0.00;FS=10.953;HaplotypeScore=207.4830;MLEAC=1;MLEAF=0.500;MQ=37.56;MQ0=0;MQRankSum=0.298;QD=4.02;ReadPosRankSum=7.797;SB=-6.970e+02 GT:AD:DP:GQ:PL 0/1:29,78:108:99:464,0,154 chrVII 877239 . G A 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;DP=105;Dels=0.00;FS=6.429;HaplotypeScore=132.0953;MLEAC=1;MLEAF=0.500;MQ=38.46;MQ0=0;MQRankSum=-1.806;QD=0.46;ReadPosRankSum=-7.070;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:84,21:105:78:78,0,839 chrVII 878193 . G A 2082 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=16.0274;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=19.64;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2115,216,0 chrVII 878219 . G A 503 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=13.97;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:57:536,57,0 chrVII 878256 . G A 1369 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=26.33;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1402,141,0 chrVII 878298 . G A 1937 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=26.90;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1970,195,0 chrVII 878461 . C T 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=2.777;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-2.109;QD=16.33;ReadPosRankSum=2.109;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1568,183,0 chrVII 878463 . T G 1540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=2.917;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.946;QD=16.21;ReadPosRankSum=1.983;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1573,186,0 chrVII 878834 . T C 1969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;MQRankSum=0.380;QD=17.74;ReadPosRankSum=2.936;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:3,106:111:99:2002,213,0 chrVII 878835 . A T 2097 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=18.72;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2130,219,0 chrVII 878869 . T C 2541 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.01;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2574,273,0 chrVII 879079 . A G 3830.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.27;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3830,408,0 chrVII 879125 . A G 3917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=170;Dels=0.00;FS=2.726;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=2.421;QD=23.04;ReadPosRankSum=2.406;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3917,409,0 chrVII 879163 . T C 3292.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.86;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3292,345,0 chrVII 879230 . C T 2159 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=21.81;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,95:99:99:2192,219,0 chrVII 879247 . T C 1858 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=20.20;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1891,204,0 chrVII 879267 . C G 1676 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=19.95;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1709,180,0 chrVII 879283 . A G 1504 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.7199;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=16.90;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1537,165,0 chrVII 879296 . G A 1552 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=17.44;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1585,165,0 chrVII 879340 . C T 2058 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.13;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2091,222,0 chrVII 879438 . C T 2023 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.08;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2056,210,0 chrVII 879687 . T G 3164 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.3445;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=23.44;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3197,330,0 chrVII 879737 . T G 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.432;QD=23.23;ReadPosRankSum=2.416;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3368,346,0 chrVII 879749 . T A 3289.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=23.49;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3289,325,0 chrVII 879853 . T A 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-0.638;QD=24.85;ReadPosRankSum=1.709;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3802,376,0 chrVII 879872 . T G 3663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=162;Dels=0.00;FS=6.004;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-0.820;QD=22.61;ReadPosRankSum=2.919;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:3663,384,0 chrVII 879875 . T C 3615.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.18;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3615,378,0 chrVII 879907 . T G 3646.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.65;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3646,376,0 chrVII 880017 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.449;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.6105;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=1.402;QD=23.89;ReadPosRankSum=-1.143;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3536,331,0 chrVII 880304 . A G 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.5859;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.324;QD=25.06;ReadPosRankSum=1.704;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:3140,324,0 chrVII 880389 . C T 3878.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3878,397,0 chrVII 880548 . C T 5087.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=16.1741;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.18;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5087,511,0 chrVII 881235 . T C 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=136;Dels=0.00;FS=3.379;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.347;QD=22.09;ReadPosRankSum=1.706;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3037,330,0 chrVII 881265 . A G 3516.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.80;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3516,366,0 chrVII 881307 . C T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.53;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4461,448,0 chrVII 881331 . C T 4879.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=23.68;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4879,490,0 chrVII 881397 . T C 4322.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=21.61;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4322,465,0 chrVII 881406 . T C 4342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.1154;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.107;QD=22.38;ReadPosRankSum=1.714;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4342,448,0 chrVII 881583 . C T 5665.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=6.2583;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.63;SB=-3.054e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5665,568,0 chrVII 881676 . A G 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.945;DP=211;Dels=0.00;FS=10.705;HaplotypeScore=10.0430;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;MQRankSum=-0.295;QD=16.27;ReadPosRankSum=3.734;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:6,205:211:99:3433,402,0 chrVII 881678 . G A 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.791;DP=209;Dels=0.00;FS=7.988;HaplotypeScore=21.6123;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=-0.580;QD=16.47;ReadPosRankSum=3.574;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:5,204:209:99:3443,402,0 chrVII 881694 . T C 3755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=1.401;QD=19.56;ReadPosRankSum=2.398;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:3755,402,0 chrVII 881739 . A T 4386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=198;Dels=0.00;FS=3.282;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.472;QD=22.15;ReadPosRankSum=1.697;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4386,445,0 chrVII 881907 . C T 4651.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.14;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4651,484,0 chrVII 881935 . T C 4986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=0.031;QD=22.06;ReadPosRankSum=1.717;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4986,526,0 chrVII 881985 . C T 5120.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.5017;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.04;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5120,508,0 chrVII 882051 . T C 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.273;QD=24.31;ReadPosRankSum=1.687;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3695,387,0 chrVII 882099 . A C 4195.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.53;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4195,439,0 chrVII 882202 . G A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.8063;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=23.02;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3822,388,0 chrVII 882264 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=8.0641;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=22.75;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2991,309,0 chrVII 882402 . G A 1543 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=51.3221;MLEAC=2;MLEAF=1.00;MQ=34.60;MQ0=0;QD=24.89;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1576,159,0 chrVII 882416 . T A 1376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=5.441;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;MQRankSum=-0.371;QD=24.57;ReadPosRankSum=1.299;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1409,141,0 chrVII 882443 . A G 1552 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=23.88;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1585,165,0 chrVII 882517 . G A 1646 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=21.10;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1679,177,0 chrVII 882535 . G A 1016 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=39.18;MQ0=0;QD=16.39;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1049,111,0 chrVII 882564 . C T 513 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=11.40;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:57:546,57,0 chrVII 882565 . C T 442 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=9.82;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:51:475,51,0 chrVII 882573 . T A 378 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;MQRankSum=0.217;QD=7.87;ReadPosRankSum=1.660;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:42:411,42,0 chrVII 882589 . T C 421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;MQRankSum=0.666;QD=8.10;ReadPosRankSum=1.666;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:48:454,48,0 chrVII 882606 . C T 444 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=8.38;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:48:477,48,0 chrVII 882614 . C T 601 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=10.73;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:63:634,63,0 chrVII 882621 . G A 569 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=10.16;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:63:602,63,0 chrVII 882652 . G A 891 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;QD=14.14;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:96:924,96,0 chrVII 882661 . G A 291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;MQRankSum=0.302;QD=4.77;ReadPosRankSum=3.668;SB=-6.568e+02 GT:AD:DP:GQ:PL 1/1:5,56:61:42:324,42,0 chrVII 882672 . T A 911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;MQRankSum=0.866;QD=13.40;ReadPosRankSum=1.681;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:96:944,96,0 chrVII 882679 . G C 890 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=13.28;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:96:923,96,0 chrVII 882684 . T C 830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.35;MQ0=0;MQRankSum=-1.732;QD=12.58;ReadPosRankSum=1.680;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:90:863,90,0 chrVII 882692 . A T 801 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;QD=11.61;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:90:834,90,0 chrVII 882696 . A G 863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.594;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1521;MLEAC=2;MLEAF=1.00;MQ=31.90;MQ0=0;MQRankSum=1.409;QD=11.21;ReadPosRankSum=0.624;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,74:77:96:896,96,0 chrVII 883069 . T C 8933.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=395;Dels=0.00;FS=8.474;HaplotypeScore=11.1357;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=3;MQRankSum=0.996;QD=22.62;ReadPosRankSum=3.422;SB=-4.377e+03 GT:AD:DP:GQ:PL 1/1:4,390:395:99:8933,940,0 chrVII 883103 . G A 8353.01 filter AC=2;AF=1.00;AN=2;DP=360;Dels=0.00;FS=0.000;HaplotypeScore=18.3426;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=5;QD=23.20;SB=-3.745e+03 GT:AD:DP:GQ:PL 1/1:2,358:360:99:8353,856,0 chrVII 883112 . G A 7072.01 filter AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=7;QD=23.26;SB=-3.155e+03 GT:AD:DP:GQ:PL 1/1:2,302:304:99:7072,712,0 chrVII 883184 . G A 2527 filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=12;QD=18.31;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2560,258,0 chrVII 883187 . G A 2511 filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.43;MQ0=12;QD=18.60;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2544,258,0 chrVII 883250 . G A 6269.01 filter AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=21.2397;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=5;QD=19.59;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:1,319:320:99:6269,634,0 chrVII 883403 . T G 6472.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.844;DP=277;Dels=0.00;FS=3.360;HaplotypeScore=17.0103;MLEAC=2;MLEAF=1.00;MQ=29.62;MQ0=13;MQRankSum=2.015;QD=23.36;ReadPosRankSum=1.103;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:3,273:277:99:6472,669,0 chrVII 883457 . A G 5403.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.812;DP=343;Dels=0.00;FS=22.399;HaplotypeScore=14.4231;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=8;MQRankSum=0.082;QD=15.75;ReadPosRankSum=3.803;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:5,336:343:99:5403,577,0 chrVII 883496 . A G 3959.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=37.70;MQ0=8;MQRankSum=-0.395;QD=11.71;ReadPosRankSum=1.722;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:1,335:338:99:3959,417,0 chrVII 883502 . T C 3903.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=340;Dels=0.00;FS=10.273;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=8;MQRankSum=-2.033;QD=11.48;ReadPosRankSum=2.924;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:3,336:340:99:3903,414,0 chrVII 883850 . G A 4074.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.82;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4074,421,0 chrVII 883964 . G A 4434.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=27.20;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4434,439,0 chrVII 884075 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.1234;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.54;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3070,327,0 chrVII 884107 . G A 3326.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.78;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3326,331,0 chrVII 884168 . C G 4471.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.8313;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.81;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4471,469,0 chrVII 884326 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.3065;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=25.46;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3268,331,0 chrVII 884396 . T C 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.489;QD=23.02;ReadPosRankSum=1.703;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2726,288,0 chrVII 885001 . C T 4563.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=17.7830;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.14;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4563,460,0 chrVII 885109 . C T 5199.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.52;SB=-3.040e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5199,514,0 chrVII 885165 . C T 4126.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.80;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4126,424,0 chrVII 885186 . G C 3712.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.3507;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.50;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,160:165:99:3712,390,0 chrVII 885274 . T G 3659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.178;DP=199;Dels=0.00;FS=15.290;HaplotypeScore=8.2884;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=0.251;QD=18.39;ReadPosRankSum=3.116;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:4,194:199:99:3659,396,0 chrVII 885279 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.9535;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=18.81;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3762,390,0 chrVII 885466 . A G 5099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=225;Dels=0.00;FS=3.699;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.640;QD=22.66;ReadPosRankSum=1.701;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5099,555,0 chrVII 885746 . G A 2959 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.25;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2992,315,0 chrVII 885870 . T A 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.698;DP=130;Dels=0.00;FS=5.872;HaplotypeScore=19.6578;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.023;QD=22.98;ReadPosRankSum=1.520;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:3020,306,0 chrVII 886023 . T C 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.658;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.187;QD=21.07;ReadPosRankSum=1.652;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2772,291,0 chrVII 886054 . T C 2452 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2602;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.16;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2485,264,0 chrVII 886112 . C T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=23.13;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3331,331,0 chrVII 886122 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.8640;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.14;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3243,342,0 chrVII 886229 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.27;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3058,333,0 chrVII 887135 . T C 2382 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.82;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2415,255,0 chrVII 887698 . G T 3779.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.8835;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.77;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3779,397,0 chrVII 888123 . A G 2674 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.53;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2707,279,0 chrVII 888247 . T A 1618 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.11;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1651,174,0 chrVII 888345 . A T 1409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=0.335;QD=22.37;ReadPosRankSum=1.676;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1442,144,0 chrVII 888361 . A T 1265 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=23.43;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1298,129,0 chrVII 888716 . A G 260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.027;DP=74;Dels=0.00;FS=2.444;HaplotypeScore=5.2794;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.716;QD=3.51;ReadPosRankSum=-5.653;SB=-5.700e+01 GT:AD:DP:GQ:PL 1/1:58,16:74:30:293,30,0 chrVII 889998 . T C 5304.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5304,547,0 chrVII 890309 . C T 6781.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=12.8466;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.49;SB=-3.441e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:6781,685,0 chrVII 890597 . A G 4722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=219;Dels=0.00;FS=2.574;HaplotypeScore=15.2239;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.115;QD=21.56;ReadPosRankSum=2.949;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:3,215:219:99:4722,507,0 chrVII 891078 . C T 4328.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.4343;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.16;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4328,433,0 chrVII 891371 . T C 5180.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.78;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5180,532,0 chrVII 891431 . A C 5664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=257;Dels=0.00;FS=3.291;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.785;QD=22.04;ReadPosRankSum=1.719;SB=-3.144e+03 GT:AD:DP:GQ:PL 1/1:1,255:257:99:5664,607,0 chrVII 891611 . T C 4988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=221;Dels=0.00;FS=8.971;HaplotypeScore=12.6231;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.083;QD=22.57;ReadPosRankSum=2.427;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:4988,526,0 chrVII 891656 . C T 5386.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=18.4884;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,233:236:99:5386,535,0 chrVII 891990 . T C 5185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.395;QD=24.00;ReadPosRankSum=1.700;SB=-2.995e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:5185,544,0 chrVII 892025 . C T 4862.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.95;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,198:203:99:4862,499,0 chrVII 892112 . A G 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=163;Dels=0.00;FS=9.691;HaplotypeScore=13.8463;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.784;QD=23.26;ReadPosRankSum=2.932;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3791,405,0 chrVII 892181 . G A 3977.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.47;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3977,409,0 chrVII 892212 . G T 4151.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.1009;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.42;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4151,424,0 chrVII 892437 . A C 3086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-0.797;QD=22.36;ReadPosRankSum=1.707;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3119,327,0 chrVII 892452 . T C 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.062;DP=138;Dels=0.00;FS=8.911;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.671;QD=21.45;ReadPosRankSum=3.394;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:4,134:138:99:2993,315,0 chrVII 892563 . A C 3425.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.30;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3425,375,0 chrVII 893054 . G A 2875 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7980;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.62;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2908,295,0 chrVII 893214 . G T 2871 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.5165;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.86;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2904,289,0 chrVII 893319 . C T 4002.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.3255;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=25.33;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4002,400,0 chrVII 893535 . A T 3849.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.25;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3849,397,0 chrVII 893550 . C T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=18.90;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:3970,400,0 chrVII 894066 . A T 4536.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.57;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4536,460,0 chrVII 894078 . T A 3717.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.49;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3717,373,0 chrVII 894109 . T C 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.120;DP=180;Dels=0.00;FS=8.193;HaplotypeScore=10.5156;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=2.134;QD=19.87;ReadPosRankSum=0.144;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3577,387,0 chrVII 894312 . C T 4132.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=25.99;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4132,409,0 chrVII 894336 . T C 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=159;Dels=0.00;FS=2.976;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-1.337;QD=24.11;ReadPosRankSum=2.388;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3834,403,0 chrVII 894371 . G A 3131 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.69;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3164,319,0 chrVII 894432 . C T 3815.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.01;FS=0.000;HaplotypeScore=24.4480;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.57;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3815,402,0 chrVII 894512 . A G 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=182;Dels=0.02;FS=5.915;HaplotypeScore=65.2359;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-1.354;QD=19.31;ReadPosRankSum=2.961;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:3514,375,0 chrVII 895001 . C T 2832 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=22.30;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2865,283,0 chrVII 895006 . G C 2775 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=20.86;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2808,291,0 chrVII 895091 . G A 3974.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=23.65;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3974,397,0 chrVII 895096 . A G 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=169;Dels=0.00;FS=3.026;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.505;QD=21.49;ReadPosRankSum=2.406;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3632,381,0 chrVII 895227 . A G 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=152;Dels=0.00;FS=6.587;HaplotypeScore=10.0567;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-0.024;QD=21.72;ReadPosRankSum=2.319;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3301,345,0 chrVII 895261 . A G 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=166;Dels=0.00;FS=6.765;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.499;QD=22.11;ReadPosRankSum=2.375;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3670,387,0 chrVII 895450 . C T 3805.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=26.42;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3805,379,0 chrVII 895768 . G A 2914 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2947,298,0 chrVII 896035 . A G 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=153;Dels=0.00;FS=6.579;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.667;QD=25.06;ReadPosRankSum=2.401;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3834,408,0 chrVII 896532 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3651,379,0 chrVII 897236 . G A 1867 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.77;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1900,198,0 chrVII 897311 . A G 2948 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.80;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2981,309,0 chrVII 897795 . G A 4428.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=26.67;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4428,442,0 chrVII 897834 . C T 4252.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.5596;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=25.93;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4252,427,0 chrVII 897873 . G A 3886.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.55;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3886,409,0 chrVII 898059 . G A 4562.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=24.40;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4562,463,0 chrVII 898083 . T C 4422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.4080;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=0.091;QD=23.15;ReadPosRankSum=1.714;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4422,469,0 chrVII 898325 . A G 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.7329;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.757;QD=22.03;ReadPosRankSum=1.692;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3878,411,0 chrVII 898435 . T C 4005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.866;QD=26.18;ReadPosRankSum=1.687;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:4005,418,0 chrVII 898998 . A G 4459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=3.184;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.268;QD=24.91;ReadPosRankSum=1.693;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4459,469,0 chrVII 899421 . T C 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=142;Dels=0.00;FS=5.649;HaplotypeScore=7.8139;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.079;QD=21.74;ReadPosRankSum=2.865;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:3,138:142:99:3120,330,0 chrVII 899490 . T C 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.332;QD=23.91;ReadPosRankSum=1.710;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3730,391,0 chrVII 899896 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.62;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3407,340,0 chrVII 900087 . C T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.1500;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3613,364,0 chrVII 900146 . T C 3759.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3759,396,0 chrVII 900405 . C T 3188 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.7877;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.44;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3221,333,0 chrVII 900753 . C A 5336.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.04;SB=-3.004e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5336,541,0 chrVII 901215 . C A 6015.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=21.7812;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.96;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:6015,613,0 chrVII 901763 . T C 4672.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.7141;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.13;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4672,498,0 chrVII 902028 . A G 4564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=187;Dels=0.00;FS=6.091;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-0.651;QD=24.41;ReadPosRankSum=2.898;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:4564,478,0 chrVII 902287 . C T 3127 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=25.22;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3160,316,0 chrVII 902358 . C T 2610 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.39;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2643,267,0 chrVII 902387 . A G 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.464;DP=114;Dels=0.00;FS=15.652;HaplotypeScore=16.6151;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.677;QD=22.37;ReadPosRankSum=3.218;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:5,108:114:99:2583,270,0 chrVII 902486 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.62;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2796,283,0 chrVII 902502 . T C 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=124;Dels=0.00;FS=2.981;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=0.030;QD=20.31;ReadPosRankSum=2.330;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2552,267,0 chrVII 902791 . G A 5915.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=15.9783;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.85;SB=-3.270e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5915,580,0 chrVII 902985 . A G 7476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=320;Dels=0.00;FS=4.366;HaplotypeScore=13.0980;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.628;QD=23.36;ReadPosRankSum=1.710;SB=-3.009e+03 GT:AD:DP:GQ:PL 1/1:1,317:320:99:7476,799,0 chrVII 904076 . T C 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.630;DP=199;Dels=0.00;FS=5.313;HaplotypeScore=22.2344;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.477;QD=22.63;ReadPosRankSum=2.934;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:4503,477,0 chrVII 904249 . C T 5412.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.7935;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.53;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5412,544,0 chrVII 904346 . G A 7838.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=22.1719;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.75;SB=-4.037e+03 GT:AD:DP:GQ:PL 1/1:0,327:330:99:7838,779,0 chrVII 905027 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.249;QD=25.76;ReadPosRankSum=1.705;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3349,346,0 chrVII 905350 . G A 7277.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=15.3073;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.58;SB=-3.840e+03 GT:AD:DP:GQ:PL 1/1:0,296:296:99:7277,760,0 chrVII 906149 . T C 8147.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.624;DP=362;Dels=0.00;FS=11.359;HaplotypeScore=23.8499;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.479;QD=22.51;ReadPosRankSum=3.803;SB=-3.908e+03 GT:AD:DP:GQ:PL 1/1:5,351:362:99:8147,871,0 chrVII 906737 . A G 6352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=269;Dels=0.00;FS=3.025;HaplotypeScore=15.7928;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.296;QD=23.61;ReadPosRankSum=2.431;SB=-3.593e+03 GT:AD:DP:GQ:PL 1/1:2,267:269:99:6352,658,0 chrVII 906984 . C T 8568.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=26.53;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:0,321:323:99:8568,851,0 chrVII 907178 . A G 8622.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=381;Dels=0.00;FS=3.022;HaplotypeScore=22.0283;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.327;QD=22.63;ReadPosRankSum=2.437;SB=-5.317e+03 GT:AD:DP:GQ:PL 1/1:2,377:381:99:8622,886,0 chrVII 907361 . C T 8029.01 PASS AC=2;AF=1.00;AN=2;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=16.9698;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.48;SB=-3.377e+03 GT:AD:DP:GQ:PL 1/1:0,339:342:99:8029,805,0 chrVII 907391 . T C 7295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=318;Dels=0.00;FS=4.404;HaplotypeScore=18.5102;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.579;QD=22.94;ReadPosRankSum=1.699;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:1,316:318:99:7295,769,0 chrVII 907442 . C T 5362.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=18.8846;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.11;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5362,565,0 chrVII 907598 . T C 4868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=226;Dels=0.00;FS=3.002;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.375;QD=21.54;ReadPosRankSum=2.363;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:4868,517,0 chrVII 907942 . C G 7604.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=25.3820;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.76;SB=-3.218e+03 GT:AD:DP:GQ:PL 1/1:0,318:320:99:7604,787,0 chrVII 908105 . T C 6902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=329;Dels=0.00;FS=10.868;HaplotypeScore=20.6992;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.443;QD=20.98;ReadPosRankSum=2.960;SB=-3.694e+03 GT:AD:DP:GQ:PL 1/1:3,325:329:99:6902,733,0 chrVII 908207 . G A 8199.01 PASS AC=2;AF=1.00;AN=2;DP=333;Dels=0.00;FS=0.000;HaplotypeScore=25.1192;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=24.62;SB=-4.478e+03 GT:AD:DP:GQ:PL 1/1:0,331:333:99:8199,826,0 chrVII 908376 . A G 5972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=279;Dels=0.00;FS=2.958;HaplotypeScore=18.1108;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=0.954;QD=21.41;ReadPosRankSum=2.282;SB=-3.289e+03 GT:AD:DP:GQ:PL 1/1:2,277:279:99:5972,637,0 chrVII 908426 . C T 5651.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.24;SB=-3.163e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:5651,565,0 chrVII 908432 . C T 5319.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.86;SB=-3.061e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5319,535,0 chrVII 908492 . C A 7320.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=23.8980;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.09;SB=-4.245e+03 GT:AD:DP:GQ:PL 1/1:0,315:317:99:7320,763,0 chrVII 908833 . G A 1889 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.03;FS=0.000;HaplotypeScore=12.0311;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.22;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1922,192,0 chrVII 909179 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=141.9540;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=21.69;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3341,345,0 chrVII 909227 . A G 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=-0.888;QD=19.15;ReadPosRankSum=1.710;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3039,327,0 chrVII 909569 . A G 4149.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.45;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4149,427,0 chrVII 909620 . T C 3957.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.41;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3957,415,0 chrVII 909701 . C T 4849.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=24.61;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4849,487,0 chrVII 909722 . A G 4334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=191;Dels=0.00;FS=5.986;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-1.921;QD=22.69;ReadPosRankSum=2.858;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:4334,454,0 chrVII 909914 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.5209;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=22.01;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3499,352,0 chrVII 909923 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=22.93;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3393,343,0 chrVII 910249 . G A 1193 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.86;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1226,129,0 chrVII 910292 . T C 1121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.022;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.024;QD=21.56;ReadPosRankSum=2.355;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:1154,123,0 chrVII 910327 . C T 2024 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=24.68;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2057,210,0 chrVII 910338 . T C 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.656;DP=95;Dels=0.00;FS=7.608;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=1.078;QD=21.96;ReadPosRankSum=3.656;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:5,90:95:99:2119,228,0 chrVII 910494 . T G 2639 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1659;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=23.77;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2672,279,0 chrVII 910502 . A G 2400 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=21.62;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2433,261,0 chrVII 910560 . A T 2535 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=20.44;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2568,270,0 chrVII 910572 . A G 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=0.831;QD=21.23;ReadPosRankSum=1.704;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2687,282,0 chrVII 910638 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.36;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2940,297,0 chrVII 910647 . T C 2892 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.74;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2925,300,0 chrVII 910992 . A G 3425.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.18;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3425,355,0 chrVII 911134 . C T 3298.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.01;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3298,331,0 chrVII 911141 . C T 3043 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.70;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3076,310,0 chrVII 911221 . G A 3838.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.26;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3838,402,0 chrVII 911377 . A G 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.624;QD=23.13;ReadPosRankSum=1.709;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3400,369,0 chrVII 911599 . T C 1800 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.22;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1833,192,0 chrVII 911822 . A G 1781 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.58;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1814,192,0 chrVII 911857 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3919;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.09;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2694,268,0 chrVII 911978 . G A 3588.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.38;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3588,361,0 chrVII 912148 . A G 4339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=188;Dels=0.00;FS=3.373;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.232;QD=23.08;ReadPosRankSum=1.695;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4339,462,0 chrVII 912560 . C T 6769.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.03;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:6769,688,0 chrVII 912779 . T C 6147.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.89;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:6147,634,0 chrVII 913000 . T C 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=160;Dels=0.00;FS=3.038;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=1.491;QD=22.97;ReadPosRankSum=2.403;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3675,390,0 chrVII 913057 . A G 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=-1.201;QD=20.49;ReadPosRankSum=1.686;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3107,333,0 chrVII 913063 . C T 3063 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=20.70;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3096,307,0 chrVII 913078 . G A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=22.20;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3396,349,0 chrVII 913222 . G A 3615.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3565;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.78;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3615,384,0 chrVII 913309 . G A 2937 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.59;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2970,309,0 chrVII 913551 . G A 5873.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.2402;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.22;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5873,595,0 chrVII 913794 . C T 4392.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=23.4126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:4392,442,0 chrVII 913905 . T C 4164.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.7737;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.80;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4164,436,0 chrVII 914107 . C T 4571.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=16.7694;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.32;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4571,463,0 chrVII 914517 . C T 6030.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=17.7170;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.50;SB=-4.486e+03 GT:AD:DP:GQ:PL 1/1:0,324:326:99:6030,610,0 chrVII 914538 . G A 6522.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=14.5699;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=19.76;SB=-4.406e+03 GT:AD:DP:GQ:PL 1/1:0,330:330:99:6522,661,0 chrVII 914816 . C G 3503.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.8294;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.05;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3503,366,0 chrVII 915330 . T C 4546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=192;Dels=0.00;FS=3.023;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-2.257;QD=23.68;ReadPosRankSum=2.385;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4546,487,0 chrVII 915876 . A G 5064.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5064,526,0 chrVII 916305 . T C 3608.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.73;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3608,387,0 chrVII 916324 . T C 3979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=189;Dels=0.00;FS=4.183;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=0.019;QD=21.05;ReadPosRankSum=1.695;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,185:189:99:3979,415,0 chrVII 916389 . G A 5214.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.57;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5214,544,0 chrVII 916476 . C T 3414.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.46;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3414,354,0 chrVII 916672 . C T 2883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.4328;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.557;QD=25.74;ReadPosRankSum=1.701;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2916,270,0 chrVII 916853 . T C 3021 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.98;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3054,324,0 chrVII 916953 . T C 3220.05 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.35;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3253,342,0 chrVII 917004 . C T 3923.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=25.47;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3923,400,0 chrVII 917241 . C T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=19.4183;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=24.18;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3458,352,0 chrVII 917280 . G A 3500.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=24.31;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3500,349,0 chrVII 917290 . G A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=24.13;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3571,361,0 chrVII 917370 . C T 2457 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.18;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2490,249,0 chrVII 917381 . A G 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=118;Dels=0.00;FS=10.156;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=0.177;QD=20.75;ReadPosRankSum=2.408;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2482,258,0 chrVII 917454 . A G 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=169;Dels=0.00;FS=6.525;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.967;QD=23.75;ReadPosRankSum=2.421;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:4013,421,0 chrVII 917483 . C T 4011.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.1286;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.46;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4011,403,0 chrVII 917548 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.31;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3268,328,0 chrVII 917785 . G A 3179 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.87;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3212,328,0 chrVII 918497 . A C 4009.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.58;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4009,423,0 chrVII 918518 . G A 3963.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=24.61;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3963,406,0 chrVII 918731 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=24.68;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3381,340,0 chrVII 918781 . T C 3723.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.42;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3723,391,0 chrVII 918808 . T C 3921.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=24.20;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3921,414,0 chrVII 918846 . T C 3897.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.40;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3897,409,0 chrVII 918863 . C T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.44;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3475,361,0 chrVII 918902 . A G 4016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=181;Dels=0.00;FS=4.605;HaplotypeScore=11.5507;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-0.881;QD=22.19;ReadPosRankSum=1.693;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:4016,421,0 chrVII 918971 . T C 4319.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.11;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4319,445,0 chrVII 919258 . T C 4791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=194;Dels=0.00;FS=5.547;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.157;QD=24.70;ReadPosRankSum=2.964;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:3,189:194:99:4791,502,0 chrVII 919382 . T C 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=124;Dels=0.00;FS=7.598;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.050;QD=21.96;ReadPosRankSum=2.410;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2756,294,0 chrVII 919513 . G A 2244 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=22.67;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2277,228,0 chrVII 919531 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.76;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2109,219,0 chrVII 919561 . A T 2170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=3.045;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=1.126;QD=23.33;ReadPosRankSum=2.344;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2203,222,0 chrVII 919661 . C T 2800 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.00;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2833,283,0 chrVII 919935 . G A 1909 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=24.79;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1942,201,0 chrVII 920047 . T C 1807 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=22.04;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1840,192,0 chrVII 920060 . G A 1455 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=17.53;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1488,159,0 chrVII 920114 . T A 619 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=60.7122;MLEAC=2;MLEAF=1.00;MQ=31.13;MQ0=0;QD=7.55;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:66:652,66,0 chrVII 920237 . C T 4136.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.77;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4136,415,0 chrVII 920238 . A G 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=191;Dels=0.00;FS=6.682;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=0.843;QD=20.73;ReadPosRankSum=1.660;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3960,423,0 chrVII 920740 . A G 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.2664;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.856;QD=21.55;ReadPosRankSum=2.952;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3201,348,0 chrVII 920955 . G A 2027 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.27;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2060,219,0 chrVII 921308 . C T 5134.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5134,517,0 chrVII 921947 . G A 2574 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3337;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=26.00;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2607,279,0 chrVII 922752 . C T 4249.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.6516;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.42;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4249,439,0 chrVII 923476 . T C 1656 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.51;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1689,180,0 chrVII 923812 . C G 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.749;DP=143;Dels=0.00;FS=3.430;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.061;QD=25.31;ReadPosRankSum=0.430;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3620,384,0 chrVII 923971 . C T 4332.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.19;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4332,430,0 chrVII 924839 . G C 4022.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.8508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4022,438,0 chrVII 926236 . A G 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=3.397;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.121;QD=24.52;ReadPosRankSum=1.705;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3196,331,0 chrVII 927088 . G A 3194 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.88;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3227,342,0 chrVII 927341 . T A 2442 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.82;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2475,249,0 chrVII 927609 . A G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.380;DP=113;Dels=0.00;FS=9.250;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.148;QD=23.50;ReadPosRankSum=3.348;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:4,109:113:99:2688,276,0 chrVII 928933 . G A 2848 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2881,294,0 chrVII 929400 . A G 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=122;Dels=0.00;FS=9.931;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.558;QD=23.98;ReadPosRankSum=2.842;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:3,118:122:99:2958,312,0 chrVII 930875 . T G 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.251;DP=136;Dels=0.00;FS=8.904;HaplotypeScore=31.7849;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=1.278;QD=22.87;ReadPosRankSum=3.264;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:4,131:136:99:3144,336,0 chrVII 931025 . T C 2110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;MQRankSum=1.062;QD=22.69;ReadPosRankSum=1.695;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2143,231,0 chrVII 931109 . C G 2846 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=24.96;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2879,306,0 chrVII 931830 . A G 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=3.160;HaplotypeScore=5.0248;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;MQRankSum=-1.732;QD=24.54;ReadPosRankSum=1.703;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2953,318,0 chrVII 932243 . A G 3385.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=27.08;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3385,349,0 chrVII 932463 . T A 3656.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.88;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3656,367,0 chrVII 932498 . T C 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.930;QD=24.28;ReadPosRankSum=1.675;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:3020,315,0 chrVII 933345 . G C 2834 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.64;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2867,300,0 chrVII 933869 . G T 3721.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.31;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3721,382,0 chrVII 934463 . C T 3781.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.71;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3781,385,0 chrVII 934700 . G A 4696.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=18.4069;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.38;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4696,469,0 chrVII 934919 . C T 5146.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.80;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:5146,520,0 chrVII 935000 . A G 4497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.7846;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.321;QD=23.67;ReadPosRankSum=1.714;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4497,463,0 chrVII 935765 . G A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.8220;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3396,340,0 chrVII 935861 . T A 2050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.776;QD=23.56;ReadPosRankSum=1.653;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2083,216,0 chrVII 935993 . A G 2552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=3.938;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.066;QD=24.54;ReadPosRankSum=1.666;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2585,270,0 chrVII 936413 . G C 4852.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.5633;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.86;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4852,522,0 chrVII 937218 . A G 4465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=184;Dels=0.00;FS=3.032;HaplotypeScore=16.4894;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.701;QD=24.27;ReadPosRankSum=2.423;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4465,466,0 chrVII 937613 . T G 4542.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.4627;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.66;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4542,481,0 chrVII 937780 . A G 4669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=20.1906;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.350;QD=23.46;ReadPosRankSum=1.715;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4669,487,0 chrVII 937863 . T C 4313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.8301;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.448;QD=24.10;ReadPosRankSum=1.693;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4313,448,0 chrVII 938447 . T C 4983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=207;Dels=0.00;FS=2.985;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-2.292;QD=24.07;ReadPosRankSum=2.353;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:2,201:207:99:4983,520,0 chrVII 938528 . C A 5756.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.4336;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=25.14;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5756,577,0 chrVII 938768 . A C 3534.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.01;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.95;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3534,372,0 chrVII 938789 . T C 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2135;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-0.940;QD=22.60;ReadPosRankSum=1.658;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3220,336,0 chrVII 939128 . G A 4752.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=15.8219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4752,478,0 chrVII 939290 . T C 3110 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.38;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3143,336,0 chrVII 939705 . T G 2809 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=4.502;HaplotypeScore=7.2898;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;MQRankSum=-0.381;QD=19.78;ReadPosRankSum=1.683;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2842,303,0 chrVII 939707 . T G 2776 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=19.97;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,135:139:99:2809,294,0 chrVII 939713 . A G 2874 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=0.549;QD=20.24;ReadPosRankSum=2.362;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:2907,306,0 chrVII 940082 . C T 4012.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.46;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4012,406,0 chrVII 940459 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.6520;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.77;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3762,373,0 chrVII 940588 . C T 3657.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.3725;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.38;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3657,376,0 chrVII 940669 . C T 1922 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.97;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1955,195,0 chrVII 940722 . C T 1502 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1535,150,0 chrVII 941028 . A G 2962 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.0647;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.93;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2995,309,0 chrVII 942040 . G C 3438.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3438,358,0 chrVII 942301 . C A 4215.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.51;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4215,427,0 chrVII 942359 . G C 4776.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=16.6940;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.30;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:4776,493,0 chrVII 942440 . C G 4645.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.7309;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.19;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4645,481,0 chrVII 942469 . T G 3871.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.66;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3871,400,0 chrVII 942635 . C T 4447.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.41;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4447,451,0 chrVII 943671 . C T 5488.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.29;SB=-2.882e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5488,562,0 chrVII 944106 . C T 5509.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.3170;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.27;SB=-2.992e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5509,550,0 chrVII 944660 . T C 3708.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.19;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3708,396,0 chrVII 944684 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.20;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2778,291,0 chrVII 944976 . A G 1552 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=18.93;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1585,165,0 chrVII 944981 . T A 1709 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.36;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1742,171,0 chrVII 945155 . C G 1851 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9067;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.12;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1884,201,0 chrVII 945166 . C T 1965 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.90;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1998,213,0 chrVII 945207 . G T 2413 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.55;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2446,255,0 chrVII 945978 . C T 4245.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=25.27;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4245,427,0 chrVII 946206 . T C 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=109;Dels=0.00;FS=8.480;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=0.034;QD=21.96;ReadPosRankSum=2.404;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2427,261,0 chrVII 946228 . C T 2382 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.13;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2415,243,0 chrVII 946366 . C T 2143 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=19.48;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2176,219,0 chrVII 946369 . G A 2242 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=19.84;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2275,228,0 chrVII 946383 . T C 2262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=-0.286;QD=19.67;ReadPosRankSum=1.702;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2295,240,0 chrVII 946464 . C T 3686.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=6.8993;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=25.60;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3686,387,0 chrVII 946664 . G A 5076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=231;Dels=0.00;FS=3.262;HaplotypeScore=14.5851;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.007;QD=21.97;ReadPosRankSum=-0.247;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5076,538,0 chrVII 946974 . A G 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.054;QD=23.64;ReadPosRankSum=2.389;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3830,397,0 chrVII 947039 . T C 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=5.918;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.152;QD=22.43;ReadPosRankSum=1.704;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2859,297,0 chrVII 947080 . T C 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=3.322;HaplotypeScore=5.8767;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.669;QD=21.08;ReadPosRankSum=1.698;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,100:104:99:2225,234,0 chrVII 947252 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3240,325,0 chrVII 947600 . A G 2602 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2635,282,0 chrVII 948145 . G A 4577.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=16.2876;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.22;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4577,463,0 chrVII 948202 . T G 3936.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.85;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3936,417,0 chrVII 948229 . G A 3090 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6028;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.39;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3123,330,0 chrVII 948283 . C T 2676 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=25.73;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2709,271,0 chrVII 948447 . T C 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.612;DP=156;Dels=0.00;FS=11.198;HaplotypeScore=10.2832;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.167;QD=23.03;ReadPosRankSum=3.763;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:5,151:156:99:3593,375,0 chrVII 948586 . C T 4138.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.49;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4138,427,0 chrVII 948604 . A G 4252.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.0883;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.62;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4252,439,0 chrVII 948634 . C T 4633.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.1150;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.85;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4633,466,0 chrVII 948715 . G A 4230.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=16.7662;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.63;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4230,424,0 chrVII 949001 . G A 2713 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=23.59;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2746,276,0 chrVII 949014 . T C 2406 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.13;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2439,249,0 chrVII 949072 . C T 589 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.36;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:66:622,66,0 chrVII 949596 . A G 5854.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.23;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5854,610,0 chrVII 949816 . C T 4622.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.9532;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.70;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4622,466,0 chrVII 951500 . G C 3130 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=25.45;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:3163,333,0 chrVII 951635 . G A 2958 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.11;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2991,306,0 chrVII 951655 . C T 2752 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.4214;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.02;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2785,282,0 chrVII 951689 . A G 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.776;QD=21.61;ReadPosRankSum=1.702;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2540,264,0 chrVII 951726 . C G 2421 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.2090;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.24;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2454,255,0 chrVII 951733 . A T 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=115;Dels=0.03;FS=2.818;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.131;QD=21.43;ReadPosRankSum=2.340;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2498,249,0 chrVII 951825 . A T 599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.838;DP=100;Dels=0.00;FS=5.284;HaplotypeScore=98.1528;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-0.114;QD=5.99;ReadPosRankSum=1.240;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:4,96:100:84:632,84,0 chrVII 951976 . G A 3676.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6663;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=26.45;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3676,367,0 chrVII 952040 . C T 4484.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=22.53;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4484,466,0 chrVII 952051 . T G 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=-0.297;QD=20.45;ReadPosRankSum=1.697;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4069,432,0 chrVII 952076 . A G 4715.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.9800;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=21.53;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4715,487,0 chrVII 953316 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.6954;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.91;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3758,402,0 chrVII 953555 . T C 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=-0.132;QD=22.19;ReadPosRankSum=1.710;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3550,370,0 chrVII 953569 . T A 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;MQRankSum=-0.585;QD=21.44;ReadPosRankSum=1.687;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3302,334,0 chrVII 953572 . C A 3032 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=19.44;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3065,321,0 chrVII 953629 . A C 3731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=3.992;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-1.211;QD=21.57;ReadPosRankSum=1.712;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3731,396,0 chrVII 953711 . C T 3355.01 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=22.52;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3355,337,0 chrVII 953716 . C T 3087 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=22.70;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3120,315,0 chrVII 953718 . G T 2963 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.4660;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=21.95;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2996,309,0 chrVII 953861 . G A 4850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=209;Dels=0.00;FS=3.116;HaplotypeScore=16.4008;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.197;QD=23.21;ReadPosRankSum=1.715;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4850,519,0 chrVII 953935 . T C 4192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=176;Dels=0.01;FS=5.985;HaplotypeScore=20.2736;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-1.561;QD=23.82;ReadPosRankSum=2.960;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:4192,453,0 chrVII 954301 . A G 4051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.262;QD=24.55;ReadPosRankSum=1.690;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4051,429,0 chrVII 954359 . A G 4394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=179;Dels=0.00;FS=3.059;HaplotypeScore=12.7721;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.323;QD=24.55;ReadPosRankSum=1.713;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4394,454,0 chrVII 954455 . G C 3190 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=25.12;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3223,336,0 chrVII 954667 . C G 3292.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=22.70;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3292,342,0 chrVII 954681 . T C 2837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=0.455;QD=19.98;ReadPosRankSum=1.708;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2870,303,0 chrVII 954701 . C T 2982 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=21.61;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3015,309,0 chrVII 954734 . T C 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-0.289;QD=19.67;ReadPosRankSum=2.357;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2629,276,0 chrVII 954914 . T C 4217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=190;Dels=0.00;FS=2.945;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.175;QD=22.19;ReadPosRankSum=2.398;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4217,450,0 chrVII 954938 . T C 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=187;Dels=0.00;FS=3.013;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=1.675;QD=22.04;ReadPosRankSum=1.517;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4122,438,0 chrVII 955008 . T C 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.417;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-0.662;QD=21.12;ReadPosRankSum=1.648;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2652,279,0 chrVII 955019 . C T 2430 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=20.59;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2463,258,0 chrVII 955104 . C T 4346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.392;DP=173;Dels=0.00;FS=3.516;HaplotypeScore=9.5667;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.632;QD=25.12;ReadPosRankSum=-0.871;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4346,418,0 chrVII 955246 . G C 3167 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=19.92;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3200,354,0 chrVII 955247 . A G 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=3.846;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-1.581;QD=19.47;ReadPosRankSum=1.689;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3149,354,0 chrVII 955260 . G A 3431.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=21.72;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3431,343,0 chrVII 955274 . A C 2945 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=17.74;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2978,324,0 chrVII 955379 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.32;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3380,337,0 chrVII 955592 . A T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.47;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3842,379,0 chrVII 955670 . T C 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.400;DP=152;Dels=0.00;FS=9.112;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-0.511;QD=23.60;ReadPosRankSum=3.400;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:4,145:152:99:3587,373,0 chrVII 955691 . A C 3328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=149;Dels=0.00;FS=6.108;HaplotypeScore=3.3108;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=0.313;QD=22.34;ReadPosRankSum=2.939;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:3328,351,0 chrVII 955696 . T C 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=158;Dels=0.00;FS=3.027;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=1.081;QD=21.61;ReadPosRankSum=2.341;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3415,363,0 chrVII 955819 . C T 3716.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=24.29;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3716,373,0 chrVII 955886 . T C 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=1.485;QD=22.17;ReadPosRankSum=1.694;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4057,432,0 chrVII 955952 . C G 3808.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.8007;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=22.80;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3808,394,0 chrVII 955973 . T A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=24.73;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4204,436,0 chrVII 956057 . C T 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.426;DP=171;Dels=0.00;FS=3.440;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=1.263;QD=20.42;ReadPosRankSum=-0.611;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3491,351,0 chrVII 956065 . A G 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=167;Dels=0.00;FS=5.993;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-1.934;QD=20.60;ReadPosRankSum=2.886;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3440,363,0 chrVII 956093 . A G 4113.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.9962;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.98;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,192:196:99:4113,429,0 chrVII 956144 . C G 4296.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.06;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4296,456,0 chrVII 956159 . A G 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=192;Dels=0.00;FS=6.758;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.096;QD=21.23;ReadPosRankSum=2.411;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4076,421,0 chrVII 956182 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.40;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3754,393,0 chrVII 956252 . A G 4220.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.44;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4220,442,0 chrVII 956270 . T C 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.378;QD=21.84;ReadPosRankSum=1.713;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4084,424,0 chrVII 956516 . T G 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=147;Dels=0.00;FS=10.690;HaplotypeScore=8.1382;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.311;QD=21.44;ReadPosRankSum=1.557;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3185,339,0 chrVII 956576 . G A 3838.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.92;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3838,385,0 chrVII 956708 . G A 3387.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=25.28;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3387,357,0 chrVII 956731 . G A 3724.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.87;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3724,373,0 chrVII 956798 . G A 4335.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.18;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4335,454,0 chrVII 956849 . G A 3857.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.8745;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.38;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3857,403,0 chrVII 957005 . A T 4632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=193;Dels=0.00;FS=3.007;HaplotypeScore=14.3444;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.019;QD=24.00;ReadPosRankSum=2.399;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4632,472,0 chrVII 957266 . G A 2138 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.6720;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.99;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2171,222,0 chrVII 957426 . G A 1117 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=21.08;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1150,114,0 chrVII 957431 . C T 1082 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=20.04;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1115,111,0 chrVII 957465 . A G 350 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=11.29;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:42:383,42,0 chrVII 957479 . G A 112.26 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.35;MQ0=0;QD=6.60;SB=-2.073e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:15:145,15,0 chrVII 957482 . G A 115.26 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;QD=6.40;SB=-2.023e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:15:148,15,0 chrVII 957485 . G A 114.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.173;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=10.7294;MLEAC=2;MLEAF=1.00;MQ=37.64;MQ0=0;MQRankSum=1.387;QD=5.71;ReadPosRankSum=-0.520;SB=-1.781e+02 GT:AD:DP:GQ:PL 1/1:1,19:20:15:147,15,0 chrVII 958076 . T C 2073 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=23.56;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2106,222,0 chrVII 958078 . A T 2067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-0.121;QD=24.03;ReadPosRankSum=-0.443;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2100,193,0 chrVII 958224 . A C 2677 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=21.08;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2710,282,0 chrVII 958233 . G A 2518 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=19.98;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2551,267,0 chrVII 958252 . C T 2651 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=22.28;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2684,270,0 chrVII 958287 . A T 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-1.680;QD=23.41;ReadPosRankSum=1.706;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3147,313,0 chrVII 958374 . T C 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.857;DP=135;Dels=0.00;FS=1.780;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=-0.597;QD=16.24;ReadPosRankSum=4.083;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:6,128:135:99:2225,231,0 chrVII 958376 . C G 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=4.555;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;MQRankSum=-0.013;QD=16.63;ReadPosRankSum=1.682;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2345,249,0 chrVII 958388 . T G 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=0.472;QD=19.89;ReadPosRankSum=1.659;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2877,303,0 chrVII 958479 . A G 4528.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.3492;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=24.74;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4528,489,0 chrVII 958516 . T C 5528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=14.5594;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.428;QD=25.71;ReadPosRankSum=2.404;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:5528,568,0 chrVII 958592 . A G 5633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=231;Dels=0.00;FS=3.390;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.511;QD=24.39;ReadPosRankSum=1.686;SB=-2.881e+03 GT:AD:DP:GQ:PL 1/1:1,226:231:99:5633,595,0 chrVII 958623 . A C 4479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=195;Dels=0.00;FS=5.921;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=2.270;QD=22.97;ReadPosRankSum=2.933;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:3,191:195:99:4479,483,0 chrVII 958857 . T C 2989 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.22;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3022,312,0 chrVII 958955 . G A 2071 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.35;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2104,210,0 chrVII 959010 . G T 2686 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2719,282,0 chrVII 959317 . G A 4362.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.6659;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.10;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4362,442,0 chrVII 959502 . A C 4760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=197;Dels=0.00;FS=4.640;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.270;QD=24.16;ReadPosRankSum=1.697;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4760,505,0 chrVII 959629 . T C 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=161;Dels=0.00;FS=4.505;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.294;QD=25.29;ReadPosRankSum=1.688;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,157:161:99:4072,424,0 chrVII 959802 . A C 330 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=3.51;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,90:94:39:363,39,0 chrVII 960080 . T C 5676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.8779;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.496;QD=25.68;ReadPosRankSum=1.701;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:5676,592,0 chrVII 960297 . A G 5173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.482;QD=22.30;ReadPosRankSum=2.396;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:2,229:232:99:5173,547,0 chrVII 960362 . C A 4237.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.67;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4237,427,0 chrVII 960536 . T C 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.697;DP=156;Dels=0.00;FS=6.086;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.987;QD=23.78;ReadPosRankSum=2.955;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3709,390,0 chrVII 960939 . G A 5477.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.0247;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5477,577,0 chrVII 962723 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3824,405,0 chrVII 963805 . C T 5972.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=13.4764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5972,604,0 chrVII 963897 . T C 5172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.157;QD=24.28;ReadPosRankSum=1.650;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:5172,541,0 chrVII 963916 . G A 4859.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.7866;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=24.67;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4859,493,0 chrVII 963952 . T C 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=180;Dels=0.00;FS=8.270;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.925;QD=20.57;ReadPosRankSum=2.367;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:3702,396,0 chrVII 964040 . C G 3849.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.64;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3849,405,0 chrVII 964269 . T C 4281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.6460;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.757;QD=24.46;ReadPosRankSum=1.692;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4281,456,0 chrVII 964575 . T C 4933.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.3941;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.91;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4933,514,0 chrVII 965476 . A T 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.9485;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.128;QD=24.09;ReadPosRankSum=1.686;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3589,355,0 chrVII 965676 . T G 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=116;Dels=0.00;FS=3.485;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.105;QD=25.12;ReadPosRankSum=1.672;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2947,306,0 chrVII 965972 . G A 1038 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.62;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1071,117,0 chrVII 966638 . T G 2656 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2689,288,0 chrVII 968238 . G A 4480.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.15;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4480,442,0 chrVII 968764 . C T 2013 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=24.7951;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=14.80;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2046,213,0 chrVII 968999 . G T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=125;Dels=0.02;FS=0.000;HaplotypeScore=118.9631;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=0.17;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:6:52,6,0 chrVII 970290 . A T 4115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=6.297;HaplotypeScore=16.5583;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.668;QD=25.40;ReadPosRankSum=1.668;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4115,421,0 chrVII 971305 . A G 5681.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=21.5274;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-3.353e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:5681,592,0 chrVII 971746 . C T 6484.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=16.5510;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.53;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:6484,661,0 chrVII 971893 . G C 5140.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.9703;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.25;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5140,544,0 chrVII 972322 . T C 6367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=274;Dels=0.00;FS=3.019;HaplotypeScore=19.0055;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.100;QD=23.24;ReadPosRankSum=2.431;SB=-3.664e+03 GT:AD:DP:GQ:PL 1/1:2,269:274:99:6367,661,0 chrVII 972982 . G A 4056.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.87;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,211:215:99:4056,421,0 chrVII 973057 . G A 6282.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=14.6460;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-3.110e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:6282,637,0 chrVII 973111 . A G 4644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.739;DP=215;Dels=0.00;FS=9.218;HaplotypeScore=18.9171;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.114;QD=21.60;ReadPosRankSum=2.853;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:3,209:215:99:4644,504,0 chrVII 973243 . G A 6242.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=17.4290;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.97;SB=-3.186e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:6242,637,0 chrVII 974583 . A C 4573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=189;Dels=0.00;FS=3.788;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.486;QD=24.20;ReadPosRankSum=1.714;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4573,484,0 chrVII 974638 . A G 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=3.129;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.304;QD=22.56;ReadPosRankSum=1.615;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3361,346,0 chrVII 974639 . C T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.00;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3335,348,0 chrVII 974684 . A T 2972 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.64;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3005,321,0 chrVII 975047 . T C 3829.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.4851;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.59;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3829,400,0 chrVII 975265 . A C 4433.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=19.2700;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.71;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:1,183:187:99:4433,469,0 chrVII 975368 . A G 3609.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3609,393,0 chrVII 975463 . G A 4534.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.7513;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.99;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4534,454,0 chrVII 975538 . A C 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.173;DP=196;Dels=0.00;FS=4.991;HaplotypeScore=18.6264;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.318;QD=20.36;ReadPosRankSum=3.388;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:4,191:196:99:3990,417,0 chrVII 975893 . T G 3956.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3956,409,0 chrVII 976931 . T C 2327 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.4766;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.95;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2360,249,0 chrVII 983018 . C T 3387.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.85;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3387,346,0 chrVII 983061 . G C 2813 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.09;MQ0=0;QD=17.58;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2846,303,0 chrVII 983063 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.71;MQ0=0;QD=17.87;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:2857,286,0 chrVII 983089 . T C 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;MQRankSum=-0.343;QD=14.03;ReadPosRankSum=1.713;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:2586,267,0 chrVII 983091 . G C 2592 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;QD=14.24;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:2625,270,0 chrVII 983112 . G A 2645 SnpCluster AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.85;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:2678,270,0 chrVII 983114 . T C 2523 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=193;Dels=0.00;FS=2.976;HaplotypeScore=3.5534;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.441;QD=13.07;ReadPosRankSum=2.424;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:2556,267,0 chrVII 983122 . G C 1819 SnpCluster AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.9549;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.96;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:1852,195,0 chrVII 983124 . A T 1868 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.9549;MLEAC=2;MLEAF=1.00;MQ=29.56;MQ0=0;QD=11.12;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:1901,192,0 chrVII 983125 . A G 1798 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=29.56;MQ0=0;QD=10.70;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:1831,195,0 chrVII 983126 . C T 1939 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.83;MQ0=0;QD=11.47;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:1972,195,0 chrVII 983160 . A G 1570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.404;DP=160;Dels=0.00;FS=9.160;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=39.34;MQ0=0;MQRankSum=-0.552;QD=9.81;ReadPosRankSum=3.350;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:4,156:160:99:1603,171,0 chrVII 983164 . C T 1738 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=10.93;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:1771,177,0 chrVII 983588 . G A 4057.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.20;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4057,406,0 chrVII 984033 . C T 6588.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.86;SB=-3.442e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:6588,694,0 chrVII 984084 . A G 6164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.764;DP=260;Dels=0.00;FS=11.974;HaplotypeScore=20.2353;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.589;QD=23.71;ReadPosRankSum=3.764;SB=-3.343e+03 GT:AD:DP:GQ:PL 1/1:5,252:260:99:6164,640,0 chrVII 984165 . A G 4810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.291;DP=220;Dels=0.00;FS=13.464;HaplotypeScore=14.7772;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.676;QD=21.86;ReadPosRankSum=4.417;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:7,213:220:99:4810,508,0 chrVII 984362 . C T 3572.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.47;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3572,352,0 chrVII 984558 . T C 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=132;Dels=0.00;FS=3.930;HaplotypeScore=11.4878;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.569;QD=20.92;ReadPosRankSum=1.653;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2794,297,0 chrVII 984603 . G A 3115 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.25;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3148,330,0 chrVII 984677 . A G 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=124;Dels=0.00;FS=6.640;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=2.053;QD=23.80;ReadPosRankSum=2.410;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2984,306,0 chrVII 985136 . C T 6188.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=26.56;SB=-3.218e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6188,619,0 chrVII 985179 . C G 8001.01 PASS AC=2;AF=1.00;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=16.1586;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.46;SB=-4.271e+03 GT:AD:DP:GQ:PL 1/1:0,339:341:99:8001,862,0 chrVII 985210 . T C 6646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.122;DP=332;Dels=0.00;FS=20.690;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=0.213;QD=20.02;ReadPosRankSum=4.088;SB=-4.088e+03 GT:AD:DP:GQ:PL 1/1:6,325:332:99:6646,703,0 chrVII 985218 . G A 7040.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=10.5065;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.35;SB=-4.179e+03 GT:AD:DP:GQ:PL 1/1:0,343:346:99:7040,733,0 chrVII 985412 . T G 5176.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=17.9038;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.61;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:5176,553,0 chrVII 985724 . T A 60.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.338;DP=25;Dels=0.00;FS=32.482;HaplotypeScore=14.9076;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.122;QD=2.42;ReadPosRankSum=-0.933;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:5,20:25:12:93,12,0 chrVII 985797 . C T 1703 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=27.92;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1736,174,0 chrVII 985817 . G A 1622 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.85;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1655,180,0 chrVII 985834 . T A 1113 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=13.74;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1146,123,0 chrVII 985898 . A G 3113 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=26.61;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3146,327,0 chrVII 986049 . A C 4322.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.15;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4322,451,0 chrVII 986277 . G A 5206.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.9754;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.15;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5206,523,0 chrVII 986380 . A T 6072.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=11.9083;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.19;SB=-3.325e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:6072,613,0 chrVII 986418 . C T 6306.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=15.3611;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.77;SB=-3.683e+03 GT:AD:DP:GQ:PL 1/1:0,274:277:99:6306,637,0 chrVII 986601 . T C 5669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=246;Dels=0.00;FS=7.419;HaplotypeScore=13.7552;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.215;QD=23.04;ReadPosRankSum=2.330;SB=-2.965e+03 GT:AD:DP:GQ:PL 1/1:2,244:246:99:5669,595,0 chrVII 986691 . T A 4388.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=18.0353;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.39;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4388,445,0 chrVII 986764 . G T 4893.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.91;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,231:234:99:4893,499,0 chrVII 986783 . G A 4338.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.5190;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.37;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4338,439,0 chrVII 986821 . C T 2731 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.67;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2764,288,0 chrVII 986874 . G A 4378.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=27.71;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4378,436,0 chrVII 986910 . G A 3517.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.3462;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=26.85;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3517,355,0 chrVII 986969 . G A 1894 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.37;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,90:93:99:1927,201,0 chrVII 986990 . T C 2010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=104;Dels=0.00;FS=2.784;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-0.509;QD=19.33;ReadPosRankSum=2.402;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2043,216,0 chrVII 987011 . T A 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-0.244;QD=18.15;ReadPosRankSum=1.651;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2356,252,0 chrVII 987032 . C A 2542 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=18.03;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2575,255,0 chrVII 987084 . T G 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=1.538;QD=16.21;ReadPosRankSum=0.692;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:2480,258,0 chrVII 987134 . T A 1974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=13.7409;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.546;QD=17.78;ReadPosRankSum=1.670;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2007,204,0 chrVII 987273 . A G 1901 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=15.97;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1934,204,0 chrVII 987364 . A T 1681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=180;Dels=0.00;FS=5.692;HaplotypeScore=163.2003;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;MQRankSum=-0.564;QD=9.34;ReadPosRankSum=1.713;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:1714,215,0 chrVII 987415 . C T 3120 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=17.43;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3153,319,0 chrVII 987417 . T C 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;MQRankSum=-1.054;QD=16.60;ReadPosRankSum=1.676;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3088,324,0 chrVII 987450 . T C 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-1.289;QD=18.90;ReadPosRankSum=1.711;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3133,333,0 chrVII 987489 . A G 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-1.498;QD=19.63;ReadPosRankSum=1.706;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2683,279,0 chrVII 987590 . C T 4021.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=21.97;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4021,406,0 chrVII 987595 . C T 4169.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=21.38;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4169,415,0 chrVII 987623 . G C 3865.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.01;FS=0.000;HaplotypeScore=10.0981;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=19.04;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3865,420,0 chrVII 987713 . A G 2172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.739;QD=25.55;ReadPosRankSum=2.305;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:2205,225,0 chrVII 987788 . T G 1489 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=21.58;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1522,159,0 chrVII 987829 . T C 1268 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=20.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1301,135,0 chrVII 987872 . T G 693 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=16.50;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:78:726,78,0 chrVII 987900 . T G 383 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.7753;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=13.21;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,28:29:45:416,45,0 chrVII 987926 . G A 172.06 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;QD=7.48;SB=-8.807e+01 GT:AD:DP:GQ:PL 1/1:0,22:23:21:205,21,0 chrVII 987961 . A G 747 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=11.49;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:84:780,84,0 chrVII 987973 . G A 844 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=0;QD=12.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:87:877,87,0 chrVII 987979 . C T 837 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;QD=12.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:87:870,87,0 chrVII 987992 . T C 790 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=0;MQRankSum=-0.808;QD=10.39;ReadPosRankSum=1.686;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,74:76:87:823,87,0 chrVII 988045 . C T 1759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=1.507;QD=22.84;ReadPosRankSum=1.642;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1792,177,0 chrVII 988108 . T C 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.201;QD=25.95;ReadPosRankSum=2.369;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:2,90:93:99:2446,255,0 chrVII 988142 . G A 2992 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=23.94;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,122:125:99:3025,298,0 chrVII 988162 . T C 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;MQRankSum=0.096;QD=21.04;ReadPosRankSum=1.684;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3063,324,0 chrVII 988195 . T C 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=169;Dels=0.00;FS=3.006;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=-0.256;QD=21.63;ReadPosRankSum=2.420;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3656,379,0 chrVII 988333 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.18;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3547,358,0 chrVII 988358 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.98;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3700,373,0 chrVII 988387 . C T 4041.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=23.77;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4041,406,0 chrVII 988528 . C T 4857.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.0515;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.84;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4857,502,0 chrVII 989604 . T C 2304 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.4545;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.77;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2337,243,0 chrVII 989845 . C T 2828 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.59;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2861,283,0 chrVII 989850 . T C 2788 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.43;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2821,285,0 chrVII 990356 . C T 2813 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.02;FS=0.000;HaplotypeScore=27.5632;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=22.15;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2846,288,0 chrVII 990395 . C T 3607.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=26.72;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3607,378,0 chrVII 990478 . G A 3684.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=26.50;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3684,367,0 chrVII 990505 . T C 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.0795;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.569;QD=23.57;ReadPosRankSum=0.148;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3324,360,0 chrVII 990538 . A G 2869 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=21.10;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2902,303,0 chrVII 990540 . A C 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=4.459;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;MQRankSum=-0.284;QD=20.65;ReadPosRankSum=1.680;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2800,300,0 chrVII 990576 . A G 2756 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;QD=18.50;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2789,288,0 chrVII 990609 . G T 2336 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=17.30;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2369,234,0 chrVII 990610 . G C 2237 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=0;QD=16.69;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2270,234,0 chrVII 990611 . A C 2165 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=16.04;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2198,234,0 chrVII 990621 . C T 2395 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.11;MQ0=0;QD=16.07;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2428,246,0 chrVII 990659 . T C 2244 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=17.67;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2277,246,0 chrVII 990718 . T G 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=4.478;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.631;QD=22.12;ReadPosRankSum=1.705;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2887,309,0 chrVII 990841 . C A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.4926;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=26.18;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3822,385,0 chrVII 990893 . C A 2532 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=25.07;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2565,255,0 chrVII 990971 . A T 1713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-1.550;QD=22.54;ReadPosRankSum=1.595;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1746,189,0 chrVII 991004 . G A 2098 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=23.31;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2131,216,0 chrVII 991010 . G A 2178 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.69;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2211,222,0 chrVII 991027 . C G 2182 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.60;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2215,234,0 chrVII 991617 . G A 4195.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.1612;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.42;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4195,430,0 chrVII 991689 . T C 3123 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.80;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3156,330,0 chrVII 991695 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.72;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3160,319,0 chrVII 991740 . C G 3527.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.38;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3527,369,0 chrVII 991938 . G A 5353.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=26.37;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5353,562,0 chrVII 991998 . T C 4093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=4.124;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.557;QD=24.08;ReadPosRankSum=1.691;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:4093,415,0 chrVII 992004 . A G 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.604;QD=22.00;ReadPosRankSum=1.712;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3872,405,0 chrVII 992205 . A G 4936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=202;Dels=0.00;FS=10.265;HaplotypeScore=18.8482;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.996;QD=24.44;ReadPosRankSum=2.413;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4936,529,0 chrVII 992313 . C T 3951.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.85;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3951,394,0 chrVII 992385 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.9198;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.28;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3532,372,0 chrVII 992448 . C T 4945.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4945,496,0 chrVII 992732 . A G 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=0.160;QD=23.76;ReadPosRankSum=1.683;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3374,346,0 chrVII 992799 . G A 4343.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.62;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4343,448,0 chrVII 992805 . C T 4483.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=23.72;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4483,439,0 chrVII 992889 . T C 3961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=164;Dels=0.00;FS=5.449;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.119;QD=24.15;ReadPosRankSum=2.956;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:3,158:164:99:3961,417,0 chrVII 994032 . A C 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=0.209;QD=23.48;ReadPosRankSum=-1.142;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3334,351,0 chrVII 994228 . C T 3641.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.76;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3641,390,0 chrVII 994491 . G A 3714.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.9656;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=23.96;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3714,370,0 chrVII 994520 . C G 3770.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.6500;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=22.44;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3770,394,0 chrVII 994656 . T C 2711 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=17.72;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2744,294,0 chrVII 994670 . T A 2146 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=0;QD=15.55;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2179,219,0 chrVII 994685 . A G 1875 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=2.944;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;MQRankSum=-2.226;QD=14.20;ReadPosRankSum=2.338;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:1908,204,0 chrVII 994687 . T C 1943 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.82;MQ0=0;QD=14.83;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1976,207,0 chrVII 994688 . T C 1865 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.31;MQ0=0;MQRankSum=-1.446;QD=14.02;ReadPosRankSum=1.680;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:1898,207,0 chrVII 994715 . A G 1896 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;QD=14.81;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1929,207,0 chrVII 994782 . G A 2475 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=22.50;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2508,252,0 chrVII 994826 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=21.77;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1905,192,0 chrVII 994829 . G A 1751 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;QD=21.10;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1784,180,0 chrVII 995040 . G A 1802 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=21.98;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1835,195,0 chrVII 995093 . G A 1429 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=69.5380;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=18.80;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1462,147,0 chrVII 995121 . G T 1576 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=18.99;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1609,162,0 chrVII 995158 . T C 1568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-1.541;QD=20.10;ReadPosRankSum=2.385;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:2,74:78:99:1601,171,0 chrVII 995225 . C A 2946 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=26.30;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2979,301,0 chrVII 995268 . T C 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=135;Dels=0.00;FS=2.865;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=-0.527;QD=20.13;ReadPosRankSum=2.376;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:2,131:135:99:2750,294,0 chrVII 995282 . G A 2610 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=107.8933;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=18.51;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2643,267,0 chrVII 995326 . G A 3184 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=18.95;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3217,322,0 chrVII 995359 . G A 4020.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.8423;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.58;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4020,409,0 chrVII 995395 . T C 4420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.5273;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.822;QD=24.56;ReadPosRankSum=1.655;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4420,468,0 chrVII 995429 . C T 4618.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=26.39;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4618,460,0 chrVII 995575 . A G 4815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=17.6041;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=1.502;QD=24.32;ReadPosRankSum=1.679;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4815,502,0 chrVII 995637 . G A 5976.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=16.9774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.32;SB=-3.002e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5976,598,0 chrVII 995677 . G A 4421.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.4742;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.27;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4421,468,0 chrVII 995719 . A C 4970.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.0667;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.89;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4970,526,0 chrVII 996064 . C T 4893.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=16.9339;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.87;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4893,505,0 chrVII 996153 . C T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.78;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3333,354,0 chrVII 996317 . A G 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=163;Dels=0.00;FS=3.926;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.903;QD=22.64;ReadPosRankSum=1.711;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3691,399,0 chrVII 996354 . A G 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=139;Dels=0.00;FS=7.052;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=0.946;QD=21.68;ReadPosRankSum=2.379;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3047,318,0 chrVII 996376 . G A 2474 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=19.95;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2507,261,0 chrVII 996426 . A G 2396 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=20.66;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2429,255,0 chrVII 996469 . A G 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.113;QD=19.92;ReadPosRankSum=2.388;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:2,118:122:99:2463,258,0 chrVII 997222 . T G 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.1386;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-1.691;QD=21.24;ReadPosRankSum=1.712;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3654,384,0 chrVII 997225 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.407;DP=171;Dels=0.00;FS=12.307;HaplotypeScore=5.4549;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-0.864;QD=21.65;ReadPosRankSum=3.365;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:4,163:171:99:3702,385,0 chrVII 997667 . C T 3881.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.22;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3881,388,0 chrVII 997840 . A G 4319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=3.503;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.656;QD=23.99;ReadPosRankSum=1.713;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:4319,459,0 chrVII 998281 . C T 2523 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.75;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2556,253,0 chrVII 998284 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=21.39;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2536,247,0 chrVII 998967 . T C 7016.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=15.9428;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.85;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,306:307:99:7016,745,0 chrVII 999229 . T C 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=3.680;HaplotypeScore=7.7375;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=-0.975;QD=23.21;ReadPosRankSum=1.674;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2841,300,0 chrVII 999249 . T C 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=3.504;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=-1.646;QD=23.29;ReadPosRankSum=1.703;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2851,291,0 chrVII 999269 . A G 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;MQRankSum=-0.459;QD=19.68;ReadPosRankSum=1.703;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2335,249,0 chrVII 999313 . A G 1224 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=16.77;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1257,135,0 chrVII 999317 . A G 1175 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.01;MQ0=0;QD=16.79;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1208,129,0 chrVII 999319 . G C 1190 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=16.76;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1223,129,0 chrVII 999344 . G T 1227 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=18.31;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1260,129,0 chrVII 999392 . C T 949 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.57;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:96:982,96,0 chrVII 999528 . T C 800 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=20.51;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:90:833,90,0 chrVII 999553 . T A 208.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.714;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=4.5511;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-1.327;QD=12.24;ReadPosRankSum=-1.123;SB=-1.489e+02 GT:AD:DP:GQ:PL 1/1:1,16:17:24:241,24,0 chrVII 999604 . A G 770 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,36:37:90:803,90,0 chrVII 999647 . A G 1208 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:51:99:1241,132,0 chrVII 999668 . G C 1343 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.16;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1376,144,0 chrVII 999737 . A C 1262 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.37;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1295,135,0 chrVII 1000197 . A G 4530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=198;Dels=0.00;FS=3.077;HaplotypeScore=8.7421;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.539;QD=22.88;ReadPosRankSum=1.627;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4530,498,0 chrVII 1000433 . A G 2320 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.02;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2353,249,0 chrVII 1000436 . G A 2207 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=17.94;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2240,240,0 chrVII 1000527 . C T 4829.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.0102;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.15;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4829,484,0 chrVII 1000855 . C T 4964.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.2611;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.07;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4964,493,0 chrVII 1001148 . T C 7224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=320;Dels=0.00;FS=7.074;HaplotypeScore=14.3650;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-1.024;QD=22.58;ReadPosRankSum=2.396;SB=-3.809e+03 GT:AD:DP:GQ:PL 1/1:2,318:320:99:7224,748,0 chrVII 1002607 . T A 2963 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2996,309,0 chrVII 1002934 . A G 4570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=222;Dels=0.00;FS=2.890;HaplotypeScore=11.9013;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.304;QD=20.59;ReadPosRankSum=2.383;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:4570,507,0 chrVII 1003183 . A G 4843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=3.301;HaplotypeScore=15.9003;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.491;QD=24.09;ReadPosRankSum=1.715;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4843,514,0 chrVII 1003444 . G A 2875 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2908,292,0 chrVII 1003534 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.20;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2906,292,0 chrVII 1003675 . C T 2202 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.02;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2235,225,0 chrVII 1004007 . A G 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;MQRankSum=-0.534;QD=20.83;ReadPosRankSum=1.710;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3354,372,0 chrVII 1004008 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=160;Dels=0.00;FS=2.865;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;MQRankSum=-1.083;QD=21.13;ReadPosRankSum=2.388;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3381,372,0 chrVII 1004023 . A G 3417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=163;Dels=0.00;FS=2.881;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;MQRankSum=-1.334;QD=20.96;ReadPosRankSum=2.419;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3417,354,0 chrVII 1004042 . A G 3044 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=19.77;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3077,330,0 chrVII 1004073 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=20.46;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3266,325,0 chrVII 1004074 . C T 3058 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=19.23;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3091,324,0 chrVII 1004159 . C T 2083 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=20.22;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2116,222,0 chrVII 1004169 . C A 2289 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=20.81;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2322,240,0 chrVII 1004183 . C G 2106 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.25;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2139,222,0 chrVII 1004505 . C T 158.06 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=3.7786;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=13.17;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:21:191,21,0 chrVII 1004566 . G A 1385 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.08;SB=-6.401e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1418,144,0 chrVII 1004584 . G C 1445 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.77;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1478,162,0 chrVII 1004599 . C T 1785 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.52;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1818,183,0 chrVII 1004704 . C T 1549 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.78;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1582,156,0 chrVII 1004716 . G A 1313 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.52;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1346,144,0 chrVII 1005100 . T C 4565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.0807;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.276;QD=22.05;ReadPosRankSum=1.648;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4565,478,0 chrVII 1005211 . G A 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.993;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=23.7527;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.683;QD=20.33;ReadPosRankSum=0.172;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4309,445,0 chrVII 1005304 . A T 5479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=13.8105;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.039;QD=23.82;ReadPosRankSum=1.785;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:3,226:230:99:5479,559,0 chrVII 1005412 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.8079;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.554;QD=22.84;ReadPosRankSum=1.709;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3471,369,0 chrVII 1005543 . G C 5089.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.89;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5089,544,0 chrVII 1005829 . T C 4381.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.3352;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.07;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4381,466,0 chrVII 1005907 . T G 4323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=186;Dels=0.00;FS=3.354;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=1.412;QD=23.24;ReadPosRankSum=1.713;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4323,468,0 chrVII 1006143 . C A 2660 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=24.63;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2693,268,0 chrVII 1006156 . G A 2665 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=23.38;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2698,276,0 chrVII 1006351 . A G 3825.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.36;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3825,391,0 chrVII 1006715 . C T 4082.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.68;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4082,415,0 chrVII 1007114 . G A 5278.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=24.44;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5278,526,0 chrVII 1007125 . C T 5200.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=22.41;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5200,532,0 chrVII 1007272 . A G 6116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=256;Dels=0.00;FS=3.513;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.108;QD=23.89;ReadPosRankSum=1.678;SB=-3.083e+03 GT:AD:DP:GQ:PL 1/1:1,255:256:99:6116,631,0 chrVII 1007547 . C A 5073.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.2734;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=25.24;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5073,511,0 chrVII 1007580 . A G 4250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.234;QD=22.85;ReadPosRankSum=1.713;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4250,451,0 chrVII 1007596 . G A 4311.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=23.82;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4311,439,0 chrVII 1008064 . T C 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.681;QD=26.16;ReadPosRankSum=1.706;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3532,367,0 chrVII 1008148 . A G 2567 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=25.67;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2600,273,0 chrVII 1008259 . T C 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=141;Dels=0.00;FS=2.905;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.933;QD=24.88;ReadPosRankSum=2.345;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3508,369,0 chrVII 1008397 . A G 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=162;Dels=0.00;FS=3.147;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.011;QD=22.25;ReadPosRankSum=1.711;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3605,379,0 chrVII 1008418 . T G 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=149;Dels=0.00;FS=3.040;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=-0.705;QD=20.32;ReadPosRankSum=1.708;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:1,144:149:99:3061,327,0 chrVII 1008427 . C T 3171 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=21.28;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3204,327,0 chrVII 1008469 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.1633;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=18.81;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3231,325,0 chrVII 1008481 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=3.342;HaplotypeScore=7.5540;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.401;QD=18.55;ReadPosRankSum=1.693;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3284,342,0 chrVII 1008592 . T C 3091 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.73;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3124,321,0 chrVII 1008710 . T C 4213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.4445;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-1.345;QD=24.49;ReadPosRankSum=1.712;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:4213,433,0 chrVII 1008781 . T C 3180 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.49;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3213,342,0 chrVII 1008855 . A G 4203.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.97;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4203,433,0 chrVII 1008859 . T G 4137.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.48;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4137,441,0 chrVII 1009042 . G A 4048.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=25.95;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:4048,406,0 chrVII 1009086 . C T 4104.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=24.28;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4104,427,0 chrVII 1009123 . A G 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=181;Dels=0.00;FS=7.590;HaplotypeScore=9.7051;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.309;QD=23.03;ReadPosRankSum=2.422;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:4168,444,0 chrVII 1009147 . T C 4428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=193;Dels=0.00;FS=2.565;HaplotypeScore=12.0009;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.182;QD=22.94;ReadPosRankSum=2.839;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:4428,469,0 chrVII 1009263 . A G 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=5.180;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=0.525;QD=22.07;ReadPosRankSum=1.713;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3950,420,0 chrVII 1009276 . A G 3888.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.90;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3888,420,0 chrVII 1009496 . G A 6944.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=5.8519;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=23.07;SB=-3.774e+03 GT:AD:DP:GQ:PL 1/1:0,301:301:99:6944,691,0 chrVII 1009506 . A T 6889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=302;Dels=0.00;FS=3.529;HaplotypeScore=3.9348;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-1.686;QD=22.81;ReadPosRankSum=1.721;SB=-3.825e+03 GT:AD:DP:GQ:PL 1/1:1,301:302:99:6889,691,0 chrVII 1013000 . C G 5359.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=14.0209;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.61;SB=-3.309e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5359,568,0 chrVII 1014663 . C G 2767 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.14;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2800,288,0 chrVII 1015850 . A C 3215 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.36;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:3248,348,0 chrVII 1018512 . C T 4355.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.3948;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.77;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4355,451,0 chrVII 1019203 . A G 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-1.654;QD=17.82;ReadPosRankSum=1.706;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2403,252,0 chrVII 1019210 . A G 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.043;QD=19.13;ReadPosRankSum=1.703;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2348,243,0 chrVII 1019269 . T G 2366 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.12;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2399,249,0 chrVII 1021855 . C T 3912.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.92;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3912,388,0 chrVII 1025562 . A G 6853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=17.6817;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.778;QD=22.47;ReadPosRankSum=1.664;SB=-3.694e+03 GT:AD:DP:GQ:PL 1/1:1,304:305:99:6853,715,0 chrVII 1028091 . G A 4129.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.8228;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.01;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4129,409,0 chrVII 1029537 . C T 3157 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.39;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3190,336,0 chrVII 1030416 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.53;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3331,331,0 chrVII 1032231 . C A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.22;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3304,334,0 chrVII 1033516 . T C 4713.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=15.8649;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.80;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4713,499,0 chrVII 1033830 . G A 4207.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.1104;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.32;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4207,427,0 chrVII 1034625 . T C 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.232;QD=24.87;ReadPosRankSum=1.696;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2470,255,0 chrVII 1037791 . A T 3706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.7603;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.708;QD=23.46;ReadPosRankSum=1.034;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3706,382,0 chrVII 1038689 . T C 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.397;QD=23.54;ReadPosRankSum=1.669;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2622,276,0 chrVII 1039575 . T C 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.8535;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.350;QD=23.66;ReadPosRankSum=2.931;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:3,98:101:99:2423,255,0 chrVII 1042068 . G T 3338.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.34;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3338,337,0 chrVII 1042694 . A G 6554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=258;Dels=0.00;FS=3.112;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.182;QD=25.40;ReadPosRankSum=1.719;SB=-3.553e+03 GT:AD:DP:GQ:PL 1/1:1,257:258:99:6554,673,0 chrVII 1042753 . C T 6437.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=19.0260;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.20;SB=-3.397e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6437,688,0 chrVII 1045777 . G A 4545.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.3852;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.05;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4545,478,0 chrVII 1046298 . G A 5324.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.28;SB=-2.935e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5324,538,0 chrVII 1046308 . A G 4825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=217;Dels=0.00;FS=6.938;HaplotypeScore=10.6287;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.634;QD=22.24;ReadPosRankSum=2.370;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:2,213:217:99:4825,502,0 chrVII 1046581 . G T 3091 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=14.3444;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.07;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3124,330,0 chrVII 1047535 . G A 2923 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.8959;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2956,303,0 chrVII 1048158 . C T 3792.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=24.31;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3792,397,0 chrVII 1048356 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.8318;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=23.27;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3420,357,0 chrVII 1048402 . G A 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.668;DP=205;Dels=0.00;FS=7.458;HaplotypeScore=7.9190;MLEAC=1;MLEAF=0.500;MQ=42.83;MQ0=0;MQRankSum=-7.573;QD=0.07;ReadPosRankSum=-6.177;SB=-4.380e+02 GT:AD:DP:GQ:PL 0/1:134,71:205:45:45,0,2584 chrVII 1048405 . T C 92.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.512;DP=202;Dels=0.00;FS=5.278;HaplotypeScore=4.7208;MLEAC=1;MLEAF=0.500;MQ=42.36;MQ0=0;MQRankSum=-6.951;QD=0.46;ReadPosRankSum=-5.153;SB=-4.770e+02 GT:AD:DP:GQ:PL 0/1:126,74:202:99:122,0,2473 chrVII 1048409 . G A 160.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.423;DP=201;Dels=0.00;FS=6.089;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=41.73;MQ0=0;MQRankSum=-5.466;QD=0.80;ReadPosRankSum=-4.600;SB=-5.950e+02 GT:AD:DP:GQ:PL 0/1:119,82:201:99:190,0,2203 chrVII 1048419 . T C 263.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;DP=204;Dels=0.00;FS=5.028;HaplotypeScore=6.2435;MLEAC=1;MLEAF=0.500;MQ=41.73;MQ0=0;MQRankSum=-5.140;QD=1.29;ReadPosRankSum=4.344;SB=-6.690e+02 GT:AD:DP:GQ:PL 0/1:109,95:204:99:293,0,1930 chrVII 1048437 . G A 706.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.965;DP=188;Dels=0.01;FS=3.629;HaplotypeScore=207.5632;MLEAC=1;MLEAF=0.500;MQ=39.79;MQ0=0;MQRankSum=-1.181;QD=3.76;ReadPosRankSum=9.608;SB=-8.370e+02 GT:AD:DP:GQ:PL 0/1:75,112:187:99:736,0,1040 chrVII 1048509 . A T 1397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=-1.329;QD=16.24;ReadPosRankSum=1.652;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1430,141,0 chrVII 1048815 . T C 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=1.050;QD=24.05;ReadPosRankSum=1.705;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:1,126:130:99:3159,339,0 chrVII 1048990 . C T 4889.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.46;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4889,493,0 chrVII 1049349 . T C 6729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.722;DP=312;Dels=0.00;FS=19.687;HaplotypeScore=20.0672;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.860;QD=21.57;ReadPosRankSum=3.823;SB=-3.369e+03 GT:AD:DP:GQ:PL 1/1:5,304:312:99:6729,724,0 chrVII 1049943 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.50;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3253,325,0 chrVII 1050080 . G A 2763 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2796,282,0 chrVII 1050159 . A C 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.139;DP=111;Dels=0.00;FS=8.300;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.698;QD=18.33;ReadPosRankSum=2.405;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2068,216,0 chrVII 1050164 . A C 2242 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8864;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=18.68;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2275,237,0 chrVII 1050332 . G T 4606.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.59;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4606,478,0 chrVII 1051213 . G T 6744.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=13.9119;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.61;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6744,679,0 chrVII 1051345 . C G 5653.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=9.5466;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.34;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:5653,601,0 chrVII 1051381 . C T 5345.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=15.6619;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.09;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5345,532,0 chrVII 1051846 . C T 121.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.624;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=10.8972;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;MQRankSum=-0.485;QD=4.49;ReadPosRankSum=-1.040;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:3,24:27:18:154,18,0 chrVII 1051850 . G A 178.01 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=15.5199;MLEAC=2;MLEAF=1.00;MQ=62.53;MQ0=0;QD=4.81;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,33:37:27:211,27,0 chrVII 1051991 . A G 2433 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.4217;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=27.65;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2466,255,0 chrVII 1052105 . G A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.5934;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=20.59;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3376,340,0 chrVII 1052107 . C T 3201 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.5934;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=19.88;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3234,328,0 chrVII 1052548 . A G 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.6800;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.136;QD=22.46;ReadPosRankSum=1.704;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2795,288,0 chrVII 1052907 . T C 3442.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.64;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3442,369,0 chrVII 1052940 . G A 3081 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.9879;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.17;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3114,310,0 chrVII 1053627 . C T 6357.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=13.9312;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.17;SB=-3.534e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:6357,634,0 chrVII 1053897 . T A 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=18.3374;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.038;QD=18.95;ReadPosRankSum=-0.240;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2629,273,0 chrVII 1054083 . A G 2326 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.48;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2359,243,0 chrVII 1054260 . G A 4083.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4083,430,0 chrVII 1054411 . T C 4754.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4754,493,0 chrVII 1054476 . A T 5330.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5330,559,0 chrVII 1055001 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.75;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3675,364,0 chrVII 1055127 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.373;QD=24.69;ReadPosRankSum=1.629;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3358,351,0 chrVII 1055697 . A G 4454.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.08;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4454,477,0 chrVII 1055871 . A G 4267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=187;Dels=0.00;FS=2.972;HaplotypeScore=15.0159;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=-0.260;QD=22.82;ReadPosRankSum=2.383;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:2,182:187:99:4267,442,0 chrVII 1056558 . C T 3736.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=15.7983;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.58;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3736,376,0 chrVII 1056872 . A G 5166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=209;Dels=0.00;FS=3.313;HaplotypeScore=12.7074;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.682;QD=24.72;ReadPosRankSum=1.715;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:5166,547,0 chrVII 1057542 . G A 1852 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=24.37;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1885,198,0 chrVII 1057568 . T A 1918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=0.524;QD=22.30;ReadPosRankSum=1.611;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1951,198,0 chrVII 1057570 . C A 1963 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=22.83;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1996,195,0 chrVII 1057752 . C T 3032 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=25.69;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3065,318,0 chrVII 1057780 . C T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=25.20;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3704,370,0 chrVII 1058359 . A G 6085.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.245;QD=26.12;ReadPosRankSum=1.717;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:6085,634,0 chrVII 1058948 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=25.29;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2537,264,0 chrVII 1058963 . A G 2418 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=24.67;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2451,255,0 chrVII 1059089 . C T 3985.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4637;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=26.93;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3985,409,0 chrVII 1059129 . C T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=25.64;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3564,369,0 chrVII 1059189 . G A 4575.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=25.42;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4575,463,0 chrVII 1059339 . A G 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=176;Dels=0.00;FS=2.994;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.905;QD=22.11;ReadPosRankSum=2.393;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3891,403,0 chrVII 1059363 . G A 3810.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5706;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.54;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3810,402,0 chrVII 1059407 . C A 5324.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=24.42;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5324,535,0 chrVII 1059513 . C T 3491.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3491,372,0 chrVII 1059621 . G C 3041 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.12;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3074,318,0 chrVII 1059629 . G A 2875 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.1020;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.97;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:2908,292,0 chrVII 1059977 . T G 3900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=4.393;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.642;QD=25.32;ReadPosRankSum=0.000;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3900,400,0 chrVII 1060055 . C T 4170.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.24;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:4170,418,0 chrVII 1060130 . A C 3915.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.58;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3915,403,0 chrVII 1060260 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.5087;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.26;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3789,379,0 chrVII 1060496 . T C 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=3.430;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.184;QD=22.52;ReadPosRankSum=1.634;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3231,348,0 chrVII 1060760 . C T 3757.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.05;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3757,373,0 chrVII 1061003 . T C 4811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=3.191;HaplotypeScore=11.9534;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.326;QD=24.55;ReadPosRankSum=1.697;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4811,505,0 chrVII 1061571 . A G 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=146;Dels=0.00;FS=2.868;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.500;QD=20.97;ReadPosRankSum=2.416;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3094,321,0 chrVII 1061633 . A G 3388.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.8404;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.59;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3388,357,0 chrVII 1061731 . C T 4528.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.09;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:4528,457,0 chrVII 1062031 . T C 5497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=245;Dels=0.00;FS=9.358;HaplotypeScore=9.4992;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.285;QD=22.44;ReadPosRankSum=2.938;SB=-3.258e+03 GT:AD:DP:GQ:PL 1/1:3,240:245:99:5497,580,0 chrVII 1062188 . C G 5068.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.94;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5068,541,0 chrVII 1062599 . A G 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.5838;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.377;QD=22.88;ReadPosRankSum=1.595;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4621,498,0 chrVII 1062675 . T C 4026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=4.235;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.287;QD=22.75;ReadPosRankSum=1.712;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:4026,418,0 chrVII 1062869 . A G 3792.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.41;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3792,408,0 chrVII 1062938 . A G 4152.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.2473;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.97;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4152,447,0 chrVII 1063067 . G T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.45;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3448,366,0 chrVII 1063172 . A C 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-1.846;QD=25.75;ReadPosRankSum=2.403;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2762,285,0 chrVII 1063193 . T C 2272 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=24.70;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2305,243,0 chrVII 1063293 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=0.60;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,43:43:6:57,6,0 chrVII 1063349 . T C 666 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=4.1207;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=21.48;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:72:699,72,0 chrVII 1063368 . A G 454 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=39.49;MQ0=0;QD=21.62;SB=-6.584e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:51:487,51,0 chrVII 1063378 . C T 377 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=20.94;SB=-7.033e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:42:410,42,0 chrVII 1063387 . T C 275 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=21.15;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:33:308,33,0 chrVII 1063532 . T A 399 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.60;SB=-7.338e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:39:432,39,0 chrVII 1063533 . G A 393 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.20;SB=-7.338e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:39:426,39,0 chrVII 1063622 . G C 84.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=10.56;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,8:8:12:117,12,0 chrVII 1063629 . T C 170.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=15.46;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:203,21,0 chrVII 1063668 . A C 515 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:57:548,57,0 chrVII 1063699 . C T 551 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:60:584,60,0 chrVII 1063846 . T C 3897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.9682;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.256;QD=26.15;ReadPosRankSum=2.318;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3897,411,0 chrVII 1064750 . G A 6075.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.19;SB=-3.173e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:6075,613,0 chrVII 1064969 . A G 4245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.020;QD=24.26;ReadPosRankSum=1.692;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:4245,445,0 chrVII 1064994 . A G 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=177;Dels=0.00;FS=2.720;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.244;QD=23.44;ReadPosRankSum=2.366;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4148,436,0 chrVII 1065116 . A C 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=4.610;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.185;QD=25.71;ReadPosRankSum=1.667;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4088,430,0 chrVII 1065185 . T C 3467.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.76;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3467,358,0 chrVII 1065212 . G A 2530 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.43;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2563,258,0 chrVII 1065367 . C A 2048 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=17.50;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2081,213,0 chrVII 1065591 . T C 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.441;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=1.603;QD=23.83;ReadPosRankSum=1.700;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2607,276,0 chrVII 1065722 . C T 4639.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=25.08;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4639,490,0 chrVII 1065775 . C T 4590.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.0327;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=23.54;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4590,469,0 chrVII 1065808 . A T 5035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.2828;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=-1.715;QD=24.44;ReadPosRankSum=1.715;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:5035,511,0 chrVII 1065857 . A G 4999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=198;Dels=0.00;FS=3.376;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=0.805;QD=25.25;ReadPosRankSum=1.662;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4999,514,0 chrVII 1065874 . A G 4924.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=24.26;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4924,517,0 chrVII 1065897 . C A 5128.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=24.65;SB=-2.946e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5128,517,0 chrVII 1065929 . T C 4552.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.42;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4552,481,0 chrVII 1066008 . G A 4541.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=21.94;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4541,472,0 chrVII 1066011 . T C 4479.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=21.64;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4479,466,0 chrVII 1066023 . C T 4312.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=21.67;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4312,459,0 chrVII 1066025 . G A 4627.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=22.91;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4627,469,0 chrVII 1066097 . C T 4992.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=25.60;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4992,496,0 chrVII 1066166 . A G 4186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=176;Dels=0.00;FS=3.007;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=1.849;QD=23.78;ReadPosRankSum=2.380;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4186,436,0 chrVII 1066178 . T C 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=171;Dels=0.00;FS=7.620;HaplotypeScore=8.0763;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=0.412;QD=22.54;ReadPosRankSum=2.392;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3854,396,0 chrVII 1066252 . C G 5028.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=24.65;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:5028,532,0 chrVII 1066308 . A G 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=213;Dels=0.00;FS=3.243;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=1.174;QD=20.71;ReadPosRankSum=1.716;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:4412,469,0 chrVII 1066316 . C T 4554.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.89;SB=-2.826e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4554,457,0 chrVII 1066557 . A T 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.4673;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.832;QD=22.65;ReadPosRankSum=2.418;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3579,375,0 chrVII 1066596 . G A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.79;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3520,352,0 chrVII 1066693 . A G 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.642;DP=122;Dels=0.00;FS=2.450;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.042;QD=22.23;ReadPosRankSum=2.925;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:3,118:122:99:2745,285,0 chrVII 1066820 . G A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.85;MQ0=0;QD=27.11;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3259,325,0 chrVII 1067117 . A T 46.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.271;DP=147;Dels=0.00;FS=1.233;HaplotypeScore=128.8692;MLEAC=1;MLEAF=0.500;MQ=56.26;MQ0=0;MQRankSum=0.917;QD=0.31;ReadPosRankSum=-4.929;SB=-1.822e+01 GT:AD:DP:GQ:PL 0/1:136,11:147:10:76,0,10 chrVII 1067171 . C A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.73;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3476,369,0 chrVII 1067738 . G T 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.807;DP=251;Dels=0.00;FS=110.687;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=11.726;QD=16.57;ReadPosRankSum=-1.353;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:61,188:251:99:4159,120,0 chrVII 1067771 . G A 161.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.617;DP=317;Dels=0.00;FS=114.047;HaplotypeScore=21.4404;MLEAC=1;MLEAF=0.500;MQ=52.22;MQ0=0;MQRankSum=-14.088;QD=0.51;ReadPosRankSum=-1.009;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:216,100:317:99:191,0,4394 chrVII 1067785 . G A 522.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.411;DP=321;Dels=0.00;FS=146.482;HaplotypeScore=12.6696;MLEAC=1;MLEAF=0.500;MQ=51.57;MQ0=0;MQRankSum=-14.662;QD=1.63;ReadPosRankSum=-0.385;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:211,109:321:99:552,0,4711 chrVII 1067792 . C T 450.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.872;DP=327;Dels=0.00;FS=145.889;HaplotypeScore=13.0759;MLEAC=1;MLEAF=0.500;MQ=51.59;MQ0=0;MQRankSum=-14.797;QD=1.38;ReadPosRankSum=0.454;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:215,111:327:99:480,0,4600 chrVII 1067807 . G A 393.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.925;DP=328;Dels=0.00;FS=132.914;HaplotypeScore=16.3674;MLEAC=1;MLEAF=0.500;MQ=50.98;MQ0=0;MQRankSum=-14.667;QD=1.20;ReadPosRankSum=-0.478;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:205,122:328:99:423,0,4657 chrVII 1067822 . C T 462.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.093;DP=349;Dels=0.00;FS=183.960;HaplotypeScore=15.8171;MLEAC=1;MLEAF=0.500;MQ=50.56;MQ0=0;MQRankSum=-15.516;QD=1.32;ReadPosRankSum=-2.751;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:216,133:349:99:492,0,4845 chrVII 1067825 . A G 337.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.186;DP=341;Dels=0.00;FS=175.723;HaplotypeScore=11.8302;MLEAC=1;MLEAF=0.500;MQ=50.88;MQ0=0;MQRankSum=-15.377;QD=0.99;ReadPosRankSum=-2.540;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:215,125:341:99:367,0,5158 chrVII 1067828 . C A 333.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.392;DP=330;Dels=0.00;FS=164.179;HaplotypeScore=10.2529;MLEAC=1;MLEAF=0.500;MQ=51.37;MQ0=0;MQRankSum=-14.946;QD=1.01;ReadPosRankSum=-1.985;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:213,115:330:99:363,0,4718 chrVII 1067830 . C T 330.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.730;DP=332;Dels=0.00;FS=164.567;HaplotypeScore=18.1809;MLEAC=1;MLEAF=0.500;MQ=51.42;MQ0=0;MQRankSum=-14.311;QD=0.99;ReadPosRankSum=-2.803;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:212,119:332:99:360,0,4808 chrVII 1067832 . T A 339.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.693;DP=336;Dels=0.00;FS=140.301;HaplotypeScore=17.3922;MLEAC=1;MLEAF=0.500;MQ=51.53;MQ0=0;MQRankSum=-14.898;QD=1.01;ReadPosRankSum=-1.850;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:220,116:336:99:369,0,4959 chrVII 1067834 . T C 274.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.373;DP=341;Dels=0.00;FS=160.534;HaplotypeScore=17.3922;MLEAC=1;MLEAF=0.500;MQ=51.67;MQ0=0;MQRankSum=-15.100;QD=0.80;ReadPosRankSum=-1.496;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:226,115:341:99:304,0,4988 chrVII 1067840 . A G 251.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;DP=337;Dels=0.00;FS=164.063;HaplotypeScore=19.8637;MLEAC=1;MLEAF=0.500;MQ=51.96;MQ0=0;MQRankSum=-14.888;QD=0.74;ReadPosRankSum=-1.858;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:227,110:337:99:281,0,5049 chrVII 1067843 . G A 184.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.304;DP=338;Dels=0.00;FS=162.965;HaplotypeScore=17.4976;MLEAC=1;MLEAF=0.500;MQ=52.29;MQ0=0;MQRankSum=-14.743;QD=0.54;ReadPosRankSum=-1.474;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:231,106:338:99:214,0,5114 chrVII 1067897 . G A 7170.01 filter AC=2;AF=1.00;AN=2;DP=412;Dels=0.00;FS=0.000;HaplotypeScore=31.5899;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=17.40;SB=-3.059e+03 GT:AD:DP:GQ:PL 1/1:0,408:412:99:7170,757,0 chrVII 1068149 . G A 11775.01 filter AC=2;AF=1.00;AN=2;DP=502;Dels=0.00;FS=0.000;HaplotypeScore=26.1614;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.46;SB=-6.503e+03 GT:AD:DP:GQ:PL 1/1:0,501:502:99:11775,1163,0 chrVII 1068305 . A G 9915.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=422;Dels=0.00;FS=2.991;HaplotypeScore=28.7826;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=0.912;QD=23.50;ReadPosRankSum=2.438;SB=-5.415e+03 GT:AD:DP:GQ:PL 1/1:2,420:422:99:9915,1030,0 chrVII 1068463 . A G 4035.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.437;DP=480;Dels=0.00;FS=1.472;HaplotypeScore=43.1069;MLEAC=1;MLEAF=0.500;MQ=56.74;MQ0=0;MQRankSum=0.190;QD=8.41;ReadPosRankSum=-0.144;SB=-2.255e+03 GT:AD:DP:GQ:PL 0/1:258,222:480:99:4035,0,5046 chrVII 1068524 . T C 9023.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.106;DP=427;Dels=0.00;FS=13.772;HaplotypeScore=16.1151;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=3.998;QD=21.13;ReadPosRankSum=4.206;SB=-4.911e+03 GT:AD:DP:GQ:PL 1/1:6,419:427:99:9023,958,0 chrVII 1068533 . G A 8066.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=420;Dels=0.00;FS=3.856;HaplotypeScore=1.9577;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=2;MQRankSum=-0.804;QD=19.20;ReadPosRankSum=0.149;SB=-4.456e+03 GT:AD:DP:GQ:PL 1/1:1,419:420:99:8066,854,0 chrVII 1068569 . T C 1918.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.194;DP=428;Dels=0.00;FS=3.128;HaplotypeScore=42.8951;MLEAC=1;MLEAF=0.500;MQ=41.15;MQ0=9;MQRankSum=-0.377;QD=4.48;ReadPosRankSum=0.378;SB=-1.572e+03 GT:AD:DP:GQ:PL 0/1:226,201:428:99:1948,0,2757 chrVII 1068602 . T C 5791.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=382;Dels=0.00;FS=10.761;HaplotypeScore=9.1293;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=9;MQRankSum=0.922;QD=15.16;ReadPosRankSum=2.965;SB=-3.607e+03 GT:AD:DP:GQ:PL 1/1:3,377:382:99:5791,648,0 chrVII 1068608 . A G 6004.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.436;DP=374;Dels=0.00;FS=2.893;HaplotypeScore=7.4835;MLEAC=2;MLEAF=1.00;MQ=39.57;MQ0=9;MQRankSum=-1.017;QD=16.05;ReadPosRankSum=2.402;SB=-3.218e+03 GT:AD:DP:GQ:PL 1/1:2,370:374:99:6004,669,0 chrVII 1068680 . A G 7580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.672;DP=352;Dels=0.00;FS=7.929;HaplotypeScore=22.5840;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=1;MQRankSum=-1.730;QD=21.53;ReadPosRankSum=3.797;SB=-3.671e+03 GT:AD:DP:GQ:PL 1/1:5,346:352:99:7580,802,0 chrVII 1068831 . G A 3116 filter AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=15.1387;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=10;QD=13.49;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:3149,321,0 chrVII 1068842 . T C 2652 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.1067;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=3;QD=13.53;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:2685,276,0 chrVII 1068848 . G A 2473 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=1;QD=14.29;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:2506,258,0 chrVII 1068856 . G A 2101 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=1;QD=13.21;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2134,216,0 chrVII 1068865 . C A 2129 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.1541;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=1;QD=13.74;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2162,222,0 chrVII 1068869 . C A 1890 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.657;DP=154;Dels=0.00;FS=18.886;HaplotypeScore=11.1499;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=1;MQRankSum=3.255;QD=12.27;ReadPosRankSum=4.801;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:11,141:154:99:1923,213,0 chrVII 1068872 . T C 1969 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.209;DP=159;Dels=0.00;FS=17.621;HaplotypeScore=12.1446;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=1;MQRankSum=3.054;QD=12.38;ReadPosRankSum=5.288;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:11,148:159:99:2002,216,0 chrVII 1068878 . G A 2179 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.9836;MLEAC=2;MLEAF=1.00;MQ=32.74;MQ0=1;QD=14.62;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2212,231,0 chrVII 1069265 . A G 3640.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.76;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3640,379,0 chrVII 1069334 . T C 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.581;DP=161;Dels=0.00;FS=11.731;HaplotypeScore=16.2604;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.284;QD=23.53;ReadPosRankSum=2.878;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:3,153:161:99:3788,394,0 chrVII 1069551 . C A 5671.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.7193;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=26.62;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5671,565,0 chrVII 1069607 . T C 4756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=21.3006;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.113;QD=24.14;ReadPosRankSum=1.714;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4756,499,0 chrVII 1069663 . G A 5530.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.69;SB=-3.172e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5530,550,0 chrVII 1069733 . T C 5737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=17.0491;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=0.744;QD=23.42;ReadPosRankSum=1.718;SB=-3.220e+03 GT:AD:DP:GQ:PL 1/1:1,242:245:99:5737,601,0 chrVII 1069912 . G A 4402.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=24.05;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4402,439,0 chrVII 1069976 . C T 711 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=36.71;MQ0=0;QD=3.80;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:81:744,81,0 chrVII 1070011 . C T 1908 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=12.00;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:1941,195,0 chrVII 1070085 . G A 2681 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=27.93;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2714,268,0 chrVII 1070200 . T C 3080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=3.032;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=-0.750;QD=24.84;ReadPosRankSum=2.410;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:3113,327,0 chrVII 1070223 . A G 2891 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=23.13;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2924,309,0 chrVII 1070457 . G A 4011.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0498;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.91;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4011,423,0 chrVII 1070598 . C A 4168.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4168,439,0 chrVII 1070709 . A G 4388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.340;DP=176;Dels=0.00;FS=13.878;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.203;QD=24.93;ReadPosRankSum=3.340;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:4,172:176:99:4388,466,0 chrVII 1070793 . T C 4497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=199;Dels=0.00;FS=3.023;HaplotypeScore=10.3505;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.253;QD=22.60;ReadPosRankSum=2.376;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4497,483,0 chrVII 1071136 . G A 4509.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=23.01;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4509,451,0 chrVII 1071144 . T C 4004.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.357;QD=20.53;ReadPosRankSum=1.679;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4004,426,0 chrVII 1071147 . A G 3996.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=192;Dels=0.00;FS=6.562;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=-2.077;QD=20.81;ReadPosRankSum=2.385;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:3996,424,0 chrVII 1071150 . A G 3832.01 SnpCluster AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.65;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3832,405,0 chrVII 1071302 . A G 5221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.9751;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.008;QD=22.90;ReadPosRankSum=1.625;SB=-2.918e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:5221,564,0 chrVII 1071417 . C T 4509.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=25.33;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4509,480,0 chrVII 1071822 . A C 2440 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.17;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2473,255,0 chrVII 1072024 . G T 2384 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.92;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2417,246,0 chrVII 1072028 . G A 2065 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.29;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2098,225,0 chrVII 1072066 . C G 1909 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.09;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1942,198,0 chrVII 1072360 . C T 4961.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.97;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4961,523,0 chrVII 1072449 . A G 3818.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=22.33;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3818,400,0 chrVII 1072470 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=171;Dels=0.00;FS=8.579;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.711;QD=22.16;ReadPosRankSum=2.421;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3789,399,0 chrVII 1072500 . G A 4094.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.32;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4094,418,0 chrVII 1072524 . C T 4149.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.5725;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.72;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4149,415,0 chrVII 1072562 . T G 4039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=179;Dels=0.00;FS=4.698;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.754;QD=22.56;ReadPosRankSum=1.713;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:4039,429,0 chrVII 1072638 . A T 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.102;DP=152;Dels=0.00;FS=9.164;HaplotypeScore=8.8534;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-0.524;QD=24.50;ReadPosRankSum=3.367;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:4,148:152:99:3724,388,0 chrVII 1072664 . A G 3896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=156;Dels=0.01;FS=6.049;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;MQRankSum=-1.476;QD=24.97;ReadPosRankSum=2.418;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3896,406,0 chrVII 1072724 . G T 2531 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=7.1034;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;QD=24.57;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2564,261,0 chrVII 1072857 . C T 2432 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=23.61;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2465,252,0 chrVII 1072876 . T C 1815 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=21.87;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1848,192,0 chrVII 1072907 . G T 974 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;QD=19.48;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1007,102,0 chrVII 1073156 . G A 522 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=9.16;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:60:555,60,0 chrVII 1073165 . A G 562 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;QD=9.86;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:63:595,63,0 chrVII 1073194 . T A 1099 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;QD=13.57;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1132,117,0 chrVII 1073204 . T C 1238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.93;MQ0=0;MQRankSum=-1.732;QD=14.40;ReadPosRankSum=1.692;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1271,135,0 chrVII 1073216 . T A 1148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=75;Dels=0.00;FS=6.082;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;MQRankSum=-2.636;QD=15.31;ReadPosRankSum=2.771;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:3,72:75:99:1181,120,0 chrVII 1073220 . A G 1043 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=0;QD=13.55;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1076,117,0 chrVII 1073324 . T A 2223 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=25.85;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2256,225,0 chrVII 1073366 . T A 1538 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=24.41;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1571,159,0 chrVII 1073371 . C T 1298 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=22.38;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1331,141,0 chrVII 1073426 . G T 1994 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=23.74;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2027,207,0 chrVII 1073467 . G A 2162 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;QD=23.50;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2195,222,0 chrVII 1073551 . A T 2238 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=23.31;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2271,225,0 chrVII 1073621 . T G 876 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;QD=12.17;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:93:909,93,0 chrVII 1073622 . T G 874 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;QD=12.31;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:93:907,93,0 chrVII 1073680 . G T 1013 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=19.11;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1046,102,0 chrVII 1073763 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=23.81;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1438,147,0 chrVII 1073844 . G A 804 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.27;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:87:837,87,0 chrVII 1073875 . T A 421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=26;Dels=0.00;FS=2.944;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.048;QD=16.19;ReadPosRankSum=2.069;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:2,24:26:45:454,45,0 chrVII 1073951 . C G 297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.880;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=17.0584;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.811;QD=4.87;ReadPosRankSum=2.674;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:3,56:61:36:330,36,0 chrVII 1074147 . G C 3772.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.7817;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=24.34;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3772,397,0 chrVII 1074275 . A G 4181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=205;Dels=0.00;FS=6.571;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.692;QD=20.40;ReadPosRankSum=2.413;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4181,447,0 chrVII 1074289 . G T 3923.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.6297;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.42;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3923,409,0 chrVII 1074352 . C T 4618.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.38;SB=-2.990e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4618,457,0 chrVII 1074353 . A T 4290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-0.144;QD=19.86;ReadPosRankSum=1.716;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4290,451,0 chrVII 1074439 . T C 4326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=3.568;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-1.079;QD=22.65;ReadPosRankSum=1.714;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4326,459,0 chrVII 1074472 . T C 5223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=226;Dels=0.00;FS=3.017;HaplotypeScore=21.1668;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.586;QD=23.11;ReadPosRankSum=2.406;SB=-2.947e+03 GT:AD:DP:GQ:PL 1/1:2,223:226:99:5223,553,0 chrVII 1074589 . G C 3614.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=22.59;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3614,384,0 chrVII 1074660 . A C 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.740;DP=135;Dels=0.00;FS=4.270;HaplotypeScore=2.6934;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=2.208;QD=15.12;ReadPosRankSum=3.583;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:5,130:135:99:2074,243,0 chrVII 1074661 . C A 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.536;DP=134;Dels=0.00;FS=4.251;HaplotypeScore=2.6934;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;MQRankSum=2.172;QD=15.23;ReadPosRankSum=3.545;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:5,129:134:99:2074,243,0 chrVII 1074672 . C G 2706 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;QD=17.13;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2739,282,0 chrVII 1074691 . T C 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=187;Dels=0.00;FS=4.206;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;MQRankSum=-0.139;QD=17.84;ReadPosRankSum=1.714;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3337,345,0 chrVII 1074739 . T C 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=196;Dels=0.00;FS=10.054;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-0.375;QD=17.55;ReadPosRankSum=2.411;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:2,191:196:99:3440,363,0 chrVII 1074763 . C A 4042.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.84;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4042,409,0 chrVII 1074817 . C T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=1;QD=23.86;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3555,361,0 chrVII 1074995 . G A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.0684;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=25.41;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3583,361,0 chrVII 1075132 . C T 3653.01 SnpCluster AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;QD=19.96;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3653,370,0 chrVII 1075138 . T C 3151 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.99;MQ0=0;QD=18.64;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3184,330,0 chrVII 1075139 . T C 3126 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;MQRankSum=-1.148;QD=18.17;ReadPosRankSum=1.611;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3159,327,0 chrVII 1075157 . T C 2545 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.77;MQ0=0;QD=15.61;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2578,273,0 chrVII 1075171 . T C 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;MQRankSum=-0.010;QD=15.83;ReadPosRankSum=1.670;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:2677,282,0 chrVII 1075291 . T G 5151.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.8684;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=23.85;SB=-2.948e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5151,541,0 chrVII 1075322 . A T 4365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.2573;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;MQRankSum=0.103;QD=21.61;ReadPosRankSum=1.663;SB=-2.819e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4365,442,0 chrVII 1075323 . A T 4265.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.5233;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=21.01;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4265,442,0 chrVII 1075420 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=170;Dels=0.00;FS=3.036;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-0.695;QD=20.59;ReadPosRankSum=0.271;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:3500,375,0 chrVII 1075431 . C T 4036.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.2407;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=22.80;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4036,403,0 chrVII 1075526 . C T 4058.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=16.5945;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.94;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4058,424,0 chrVII 1075565 . A T 3608.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9922;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.14;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3608,361,0 chrVII 1075696 . C T 1723 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.28;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1756,174,0 chrVII 1075820 . C A 923 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=15.9514;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.64;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:96:956,96,0 chrVII 1075964 . G A 2002 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.81;MQ0=0;QD=28.60;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2035,201,0 chrVII 1076432 . A G 527 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.26;MQ0=3;QD=11.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:63:560,63,0 chrVII 1076533 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.07;MQ0=18;QD=1.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:6:55,6,0 chrVII 1080688 . C T 499 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=5;QD=12.79;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:54:532,54,0 chrVII 1080758 . C G 106.26 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=1;QD=15.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:7:15:139,15,0 chrVII 1081030 . G T 201.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.889;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=27.1413;MLEAC=1;MLEAF=0.500;MQ=27.54;MQ0=15;MQRankSum=0.150;QD=3.53;ReadPosRankSum=-0.965;SB=-2.050e+02 GT:AD:DP:GQ:PL 0/1:27,30:57:99:231,0,180 chrVII 1081252 . C G 192.03 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.01;MQ0=0;QD=5.65;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:24:225,24,0 chrVII 1081257 . C T 221.01 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.89;MQ0=0;QD=6.14;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:27:254,27,0 chrVII 1081262 . T A 221.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=40;Dels=0.00;FS=3.606;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.53;MQ0=1;MQRankSum=-0.578;QD=5.53;ReadPosRankSum=1.644;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:2,38:40:27:254,27,0 chrVII 1081320 . C T 110.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;DP=66;Dels=0.00;FS=15.128;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=14.36;MQ0=46;MQRankSum=-0.960;QD=1.67;ReadPosRankSum=-0.349;SB=-6.756e+01 GT:AD:DP:GQ:PL 0/1:46,20:66:97:140,0,97 chrVII 1081363 . G A 194.03 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=9.56;MQ0=69;QD=2.43;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:24:227,24,0 chrVII 1081403 . C T 106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;DP=80;Dels=0.00;FS=15.578;HaplotypeScore=1.7719;MLEAC=1;MLEAF=0.500;MQ=21.01;MQ0=41;MQRankSum=-2.512;QD=1.33;ReadPosRankSum=2.450;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,35:80:99:136,0,659 chrVII 1081407 . G A 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.772;DP=79;Dels=0.00;FS=19.227;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=20.92;MQ0=41;MQRankSum=-2.954;QD=0.58;ReadPosRankSum=3.921;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,31:79:76:76,0,715 chrVII 1081409 . G A 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.742;DP=79;Dels=0.00;FS=19.227;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.92;MQ0=41;MQRankSum=-2.775;QD=0.58;ReadPosRankSum=3.491;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,30:79:76:76,0,716 chrVII 1081450 . G A 701.46 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;DP=44;Dels=0.00;FS=9.779;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.44;MQ0=10;MQRankSum=1.791;QD=15.94;ReadPosRankSum=3.180;SB=-3.375e+02 GT:AD:DP:GQ:PL 0/1:7,37:44:1:730,0,1 chrVII 1081451 . G A 795 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.724;DP=43;Dels=0.00;FS=6.435;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=10;MQRankSum=0.407;QD=18.49;ReadPosRankSum=2.787;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:6,37:43:39:828,39,0 chrVII 1081530 . T A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.591;DP=108;Dels=0.00;FS=27.868;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.22;MQ0=90;MQRankSum=0.591;QD=0.20;ReadPosRankSum=0.099;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:31,77:108:6:53,6,0 chrVII 1081629 . A G 350 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=20.10;MQ0=19;QD=8.97;SB=-6.930e-03 GT:AD:DP:GQ:PL 1/1:2,37:39:42:383,42,0 chrVII 1081731 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.06;MQ0=26;MQRankSum=1.504;QD=0.29;ReadPosRankSum=-1.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:13,28:41:6:43,6,0 chrVII 1082318 . C T 119.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100;DP=16;Dels=0.00;FS=14.819;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=15.06;MQ0=2;MQRankSum=1.369;QD=7.44;ReadPosRankSum=-0.639;SB=-2.194e+01 GT:AD:DP:GQ:PL 1/1:2,14:16:21:152,21,0 chrVII 1082331 . G T 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DP=22;Dels=0.00;FS=5.653;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.46;MQ0=5;MQRankSum=1.457;QD=1.50;ReadPosRankSum=-1.960;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:12,10:22:63:63,0,119 chrVII 1082353 . G A 443.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;DP=45;Dels=0.00;FS=33.606;HaplotypeScore=8.0575;MLEAC=1;MLEAF=0.500;MQ=23.79;MQ0=5;MQRankSum=5.396;QD=9.84;ReadPosRankSum=-3.449;SB=-6.506e-03 GT:AD:DP:GQ:PL 0/1:21,24:45:71:473,0,71 chrVII 1082357 . C T 41.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.514;DP=45;Dels=0.00;FS=6.331;HaplotypeScore=8.0575;MLEAC=1;MLEAF=0.500;MQ=23.79;MQ0=5;MQRankSum=-2.332;QD=0.91;ReadPosRankSum=4.604;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:33,12:45:71:71,0,459 chrVII 1082358 . G A 41.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.153;DP=45;Dels=0.00;FS=36.616;HaplotypeScore=8.0575;MLEAC=1;MLEAF=0.500;MQ=23.79;MQ0=5;MQRankSum=-5.424;QD=0.91;ReadPosRankSum=3.449;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:24,21:45:71:71,0,441 chrVII 1082375 . G T 478.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.632;DP=49;Dels=0.00;FS=45.858;HaplotypeScore=10.8708;MLEAC=1;MLEAF=0.500;MQ=23.16;MQ0=5;MQRankSum=5.639;QD=9.76;ReadPosRankSum=3.337;SB=-6.492e-03 GT:AD:DP:GQ:PL 0/1:24,25:49:68:508,0,68 chrVII 1082380 . G A 477.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.561;DP=49;Dels=0.00;FS=45.858;HaplotypeScore=21.7416;MLEAC=1;MLEAF=0.500;MQ=23.16;MQ0=5;MQRankSum=5.522;QD=9.73;ReadPosRankSum=3.619;SB=-6.492e-03 GT:AD:DP:GQ:PL 0/1:24,25:49:68:507,0,68 chrVII 1082390 . T G 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;DP=49;Dels=0.00;FS=8.792;HaplotypeScore=20.8084;MLEAC=1;MLEAF=0.500;MQ=23.16;MQ0=5;MQRankSum=-1.843;QD=0.78;ReadPosRankSum=-4.526;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:37,12:49:68:68,0,524 chrVII 1082477 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.34;MQ0=0;QD=1.34;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:43,6,0 chrVII 1082508 . C T 65.51 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.43;MQ0=1;QD=2.43;SB=-5.252e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:12:98,12,0 chrVII 1082514 . C T 66.51 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.32;MQ0=1;QD=2.02;SB=-1.145e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:12:99,12,0 chrVII 1082522 . T C 146.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.943;DP=52;Dels=0.00;FS=35.097;HaplotypeScore=20.9641;MLEAC=2;MLEAF=1.00;MQ=23.35;MQ0=5;MQRankSum=2.883;QD=2.81;ReadPosRankSum=3.750;SB=-1.651e+02 GT:AD:DP:GQ:PL 1/1:7,44:52:21:179,21,0 chrVII 1082587 . A G 376 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=24.94;MQ0=5;QD=7.67;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:45:409,45,0 chrVII 1082656 . G A 39.04 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;DP=9;Dels=0.00;FS=19.243;HaplotypeScore=2.7811;MLEAC=1;MLEAF=0.500;MQ=25.17;MQ0=0;MQRankSum=1.001;QD=4.34;ReadPosRankSum=-1.683;SB=-2.076e+00 GT:AD:DP:GQ:PL 0/1:6,3:9:18:69,0,18 chrVII 1082681 . C A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.791;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.94;MQ0=2;MQRankSum=-1.423;QD=1.60;ReadPosRankSum=0.158;SB=-7.871e+01 GT:AD:DP:GQ:PL 1/1:1,12:13:6:52,6,0 chrVII 1082775 . A G 1398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=91;Dels=0.00;FS=8.340;HaplotypeScore=13.2621;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=1;MQRankSum=0.938;QD=15.36;ReadPosRankSum=2.366;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:2,87:91:99:1431,150,0 chrVII 1082819 . T C 854 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.93;MQ0=4;QD=19.86;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,40:43:93:887,93,0 chrVII 1082858 . G T 450 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.44;MQ0=3;QD=19.57;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:48:483,48,0 chrVII 1082895 . C A 20.08 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.06;MQ0=0;MQRankSum=-1.302;QD=1.25;ReadPosRankSum=-1.735;SB=0.020 GT:AD:DP:GQ:PL 0/1:1,15:16:19:50,0,19 chrVII 1082905 . T C 22.24 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.71;MQ0=0;QD=1.39;SB=17.75 GT:AD:DP:GQ:PL 1/1:0,15:16:6:53,6,0 chrVII 1082906 . T A 13.24 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.71;MQ0=0;MQRankSum=-1.735;QD=0.83;ReadPosRankSum=-1.735;SB=0.020 GT:AD:DP:GQ:PL 0/1:1,15:16:19:43,0,19 chrVII 1082907 . A G 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.71;MQ0=0;QD=3.12;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:9:82,9,0 chrVII 1082918 . A G 51.04 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.19;MQ0=0;MQRankSum=-1.333;QD=1.96;ReadPosRankSum=-1.067;SB=-2.153e+01 GT:AD:DP:GQ:PL 0/1:1,25:26:18:81,0,18 chrVII 1082922 . C T 83.18 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.19;MQ0=0;MQRankSum=-1.733;QD=3.20;ReadPosRankSum=-0.400;SB=-2.154e+01 GT:AD:DP:GQ:PL 0/1:1,25:26:11:113,0,11 chrVII 1082938 . G T 66.07 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=17.68;MQ0=0;MQRankSum=-1.040;QD=2.20;ReadPosRankSum=1.040;SB=-2.031e+01 GT:AD:DP:GQ:PL 0/1:1,29:30:15:96,0,15 chrVII 1082939 . A G 61.07 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=17.68;MQ0=0;MQRankSum=-0.924;QD=2.04;ReadPosRankSum=1.155;SB=-2.031e+01 GT:AD:DP:GQ:PL 0/1:1,29:30:15:91,0,15 chrVII 1082972 . G A 1054 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;QD=15.97;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1087,117,0 chrVII 1082991 . G A 1169 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=31.66;MQ0=3;QD=18.27;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1202,129,0 chrVII 1083002 . G T 1137 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=32.02;MQ0=3;QD=17.77;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1170,126,0 chrVII 1083007 . A G 1176 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=32.41;MQ0=3;QD=17.55;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1209,132,0 chrVII 1083057 . A G 455 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=3;QD=15.69;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:51:488,51,0 chrVII 1083060 . T C 367 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=3;QD=13.59;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:45:400,45,0 chrVII 1083061 . T G 386 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=3;QD=14.30;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:45:419,45,0 chrVII 1083066 . A G 391 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=3;QD=15.04;SB=-6.792e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:45:424,45,0 chrVII 1083130 . T C 81.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=0;QD=6.25;SB=-1.412e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:15:114,15,0 chrVII 1083133 . C A 84.26 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=6.02;SB=-1.752e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:15:117,15,0 chrVII 1083136 . A G 103.13 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=6.88;SB=-1.941e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:18:136,18,0 chrVII 1083143 . T A 109.13 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=0;QD=6.82;SB=-2.121e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:18:142,18,0 chrVII 1083148 . T C 102.13 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=0;QD=6.38;SB=-2.091e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:18:135,18,0 chrVII 1083163 . T C 210 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=0;QD=10.50;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:30:243,30,0 chrVII 1083172 . A G 303 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=20.2967;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=12.62;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:39:336,39,0 chrVII 1083177 . A T 295 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=20.2967;MLEAC=2;MLEAF=1.00;MQ=25.78;MQ0=0;QD=11.80;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:39:328,39,0 chrVII 1083181 . C T 354 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=13.11;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:45:387,45,0 chrVII 1083184 . G A 328 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=12.15;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:42:361,42,0 chrVII 1083193 . G A 367 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=0;QD=13.11;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:48:400,48,0 chrVII 1083197 . C A 369 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.52;MQ0=0;QD=16.04;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:48:402,48,0 chrVII 1083199 . T G 361 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=20.2967;MLEAC=2;MLEAF=1.00;MQ=24.52;MQ0=0;QD=15.70;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:48:394,48,0 chrVII 1083201 . C G 357 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=20.2967;MLEAC=2;MLEAF=1.00;MQ=24.52;MQ0=0;QD=15.52;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:48:390,48,0 chrVII 1083207 . G T 360 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=20.2967;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;QD=16.36;SB=-6.653e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:48:393,48,0 chrVII 1083238 . A G 227 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=0;QD=16.21;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:30:260,30,0 chrVII 1083251 . C T 139.06 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.72;MQ0=0;QD=11.59;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:21:172,21,0 chrVII 1083321 . G A 151.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.74;SB=-1.221e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:18:184,18,0 chrVII 1083364 . T C 133.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.10;SB=-1.151e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:18:166,18,0 chrVII 1083404 . T G 46.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:79,9,0 chrVII 1083540 . G A 29.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.44;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:61,6,0 chrVII 1083567 . A C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.45;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:53,6,0 chrVII 1083568 . T G 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.44;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:57,6,0 chrVII 1083570 . A T 29.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.44;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:61,6,0 chrVII 1083573 . A G 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.19;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:56,6,0 chrVII 1083575 . G A 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.94;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:59,6,0 chrVII 1083596 . A T 29.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.44;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:61,6,0 chrVII 1083605 . A G 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=1;QD=9.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:3:6:59,6,0 chrVII 1083612 . T C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=1;QD=7.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,2:3:6:55,6,0 chrVII 1083662 . A G 34.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=3.50;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:67,9,0 chrVII 1083663 . A G 12.99 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=1.30;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:44,6,0 chrVII 1083664 . G A 12.99 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=1.30;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:44,6,0 chrVII 1083705 . A C 229 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.36;MQ0=0;QD=6.74;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,34:34:33:262,33,0 chrVII 1083725 . C T 280 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.8195;MLEAC=2;MLEAF=1.00;MQ=22.87;MQ0=0;QD=8.48;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:39:313,39,0 chrVII 1083727 . T C 212.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.700;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.8146;MLEAC=2;MLEAF=1.00;MQ=23.27;MQ0=0;MQRankSum=-1.374;QD=6.08;ReadPosRankSum=1.530;SB=-7.689e-01 GT:AD:DP:GQ:PL 1/1:4,31:35:9:245,9,0 chrVII 1083732 . A T 223.19 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.248;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.8146;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;MQRankSum=-1.186;QD=6.76;ReadPosRankSum=1.296;SB=1.83 GT:AD:DP:GQ:PL 1/1:4,29:33:8:255,8,0 chrVII 1083765 . C T 138.06 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.9849;MLEAC=2;MLEAF=1.00;MQ=24.65;MQ0=0;QD=4.93;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:21:171,21,0 chrVII 1083769 . A G 63.51 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=32.6363;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=0;QD=2.65;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,18:24:12:96,12,0 chrVII 1083776 . T C 14.28 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.708;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=41.4899;MLEAC=1;MLEAF=0.500;MQ=24.81;MQ0=1;MQRankSum=0.878;QD=0.55;ReadPosRankSum=1.444;SB=-1.140e-01 GT:AD:DP:GQ:PL 0/1:16,10:26:13:44,0,13 chrVII 1083781 . G A 75.51 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=16.6883;MLEAC=2;MLEAF=1.00;MQ=25.65;MQ0=1;QD=3.78;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,14:20:12:108,12,0 chrVII 1083792 . A G 38.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.355;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=8.8499;MLEAC=1;MLEAF=0.500;MQ=24.82;MQ0=2;MQRankSum=-0.353;QD=1.91;ReadPosRankSum=2.119;SB=-2.184e-01 GT:AD:DP:GQ:PL 0/1:10,10:20:10:68,0,10 chrVII 1083802 . G C 52.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=23.39;MQ0=2;MQRankSum=0.751;QD=3.78;ReadPosRankSum=0.751;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:2,9:14:9:85,9,0 chrVII 1083841 . A G 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.09;MQ0=2;MQRankSum=0.720;QD=2.85;ReadPosRankSum=-0.720;SB=1.29 GT:AD:DP:GQ:PL 1/1:3,5:8:6:54,6,0 chrVII 1083846 . A C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.47;MQ0=2;QD=3.40;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:55,6,0 chrVII 1083875 . A C 594 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.86;MQ0=7;QD=14.14;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:75:627,75,0 chrVII 1083888 . C T 630 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.81;MQ0=7;QD=14.65;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:81:663,81,0 chrVII 1083907 . A G 648 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.016;DP=56;Dels=0.04;FS=27.506;HaplotypeScore=9.6219;MLEAC=2;MLEAF=1.00;MQ=21.79;MQ0=7;MQRankSum=0.603;QD=11.57;ReadPosRankSum=3.637;SB=-6.401e+01 GT:AD:DP:GQ:PL 1/1:6,47:54:65:681,65,0 chrVII 1083946 . G T 678.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.072;DP=104;Dels=0.00;FS=5.365;HaplotypeScore=21.0660;MLEAC=1;MLEAF=0.500;MQ=24.87;MQ0=9;MQRankSum=3.571;QD=6.52;ReadPosRankSum=-3.045;SB=-3.680e+02 GT:AD:DP:GQ:PL 0/1:56,43:104:99:708,0,679 chrVII 1083951 . G A 515.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;DP=98;Dels=0.00;FS=1.716;HaplotypeScore=12.0783;MLEAC=1;MLEAF=0.500;MQ=24.73;MQ0=8;MQRankSum=-2.542;QD=5.26;ReadPosRankSum=0.436;SB=-2.580e+02 GT:AD:DP:GQ:PL 0/1:46,52:98:99:545,0,850 chrVII 1083971 . G A 239.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;DP=71;Dels=0.00;FS=55.537;HaplotypeScore=36.7537;MLEAC=1;MLEAF=0.500;MQ=27.33;MQ0=5;MQRankSum=1.390;QD=3.37;ReadPosRankSum=-0.124;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,24:71:99:269,0,940 chrVII 1084008 . G A 998 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=3;QD=22.18;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1031,102,0 chrVII 1084034 . G A 103.26 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=2;QD=9.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:15:136,15,0 chrVII 1084103 . A G 281 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=17.56;SB=-1.032e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:33:314,33,0 chrVII 1084110 . T C 106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.9684;MLEAC=1;MLEAF=0.500;MQ=27.43;MQ0=0;MQRankSum=1.195;QD=5.05;ReadPosRankSum=0.253;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,8:21:99:136,0,160 chrVII 1084111 . A G 102.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.933;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.9684;MLEAC=1;MLEAF=0.500;MQ=27.43;MQ0=0;MQRankSum=0.471;QD=4.86;ReadPosRankSum=0.181;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,8:21:99:132,0,203 chrVII 1084114 . T G 391 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.9684;MLEAC=2;MLEAF=1.00;MQ=26.99;MQ0=0;QD=17.77;SB=-7.050e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:42:424,42,0 chrVII 1084116 . G A 114.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.162;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=13.5251;MLEAC=1;MLEAF=0.500;MQ=26.58;MQ0=0;MQRankSum=1.259;QD=4.96;ReadPosRankSum=1.194;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:15,8:23:99:144,0,199 chrVII 1084124 . C G 104.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.344;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=9.8838;MLEAC=1;MLEAF=0.500;MQ=26.87;MQ0=0;MQRankSum=2.029;QD=4.00;ReadPosRankSum=1.766;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,10:26:99:134,0,187 chrVII 1084132 . T C 297.14 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=22.5080;MLEAC=1;MLEAF=0.500;MQ=26.95;MQ0=0;MQRankSum=-0.239;QD=11.01;ReadPosRankSum=-0.307;SB=-9.830e-02 GT:AD:DP:GQ:PL 0/1:4,23:27:12:327,0,12 chrVII 1084150 . G T 200.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=58.3544;MLEAC=2;MLEAF=1.00;MQ=27.22;MQ0=0;MQRankSum=1.046;QD=8.33;ReadPosRankSum=-1.665;SB=2.99 GT:AD:DP:GQ:PL 1/1:4,20:24:27:233,27,0 chrVII 1084151 . G C 110.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.419;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=55.4061;MLEAC=1;MLEAF=0.500;MQ=27.22;MQ0=0;MQRankSum=1.444;QD=4.58;ReadPosRankSum=-0.532;SB=-8.690e-03 GT:AD:DP:GQ:PL 0/1:9,11:24:30:140,0,30 chrVII 1084152 . C G 193.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.975;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=52.5308;MLEAC=2;MLEAF=1.00;MQ=27.22;MQ0=0;MQRankSum=1.123;QD=8.04;ReadPosRankSum=-1.588;SB=2.99 GT:AD:DP:GQ:PL 1/1:4,20:24:27:226,27,0 chrVII 1084184 . G A 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.333;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=70.6145;MLEAC=1;MLEAF=0.500;MQ=26.95;MQ0=0;MQRankSum=1.532;QD=1.21;ReadPosRankSum=1.721;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,9:29:65:65,0,91 chrVII 1084191 . A G 166.06 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=42.3078;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=0;QD=5.93;SB=-2.707e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:21:199,21,0 chrVII 1084194 . A T 73.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.869;DP=28;Dels=0.00;FS=4.929;HaplotypeScore=34.5931;MLEAC=1;MLEAF=0.500;MQ=26.87;MQ0=0;MQRankSum=2.410;QD=2.61;ReadPosRankSum=-0.148;SB=0.020 GT:AD:DP:GQ:PL 0/1:9,19:28:35:103,0,35 chrVII 1084199 . C T 77.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=27;Dels=0.00;FS=14.314;HaplotypeScore=8.5340;MLEAC=2;MLEAF=1.00;MQ=26.79;MQ0=0;MQRankSum=0.963;QD=2.87;ReadPosRankSum=0.193;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,26:27:12:110,12,0 chrVIII 66 . C T 527.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.478;DP=52;Dels=0.00;FS=1.814;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=40.83;MQ0=1;MQRankSum=-1.257;QD=10.13;ReadPosRankSum=4.997;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:19,33:52:99:557,0,261 chrVIII 67 . T A 516.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;DP=52;Dels=0.00;FS=1.814;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=40.83;MQ0=1;MQRankSum=-1.315;QD=9.92;ReadPosRankSum=4.861;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:19,33:52:99:546,0,274 chrVIII 138 . A G 788 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.35;MQ0=1;QD=21.30;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:93:821,93,0 chrVIII 291 . C G 366.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.661;DP=288;Dels=0.00;FS=10.285;HaplotypeScore=11.3716;MLEAC=1;MLEAF=0.500;MQ=20.31;MQ0=4;MQRankSum=-2.959;QD=1.27;ReadPosRankSum=-0.018;SB=-9.801e+01 GT:AD:DP:GQ:PL 0/1:156,131:288:99:396,0,731 chrVIII 338 . G A 209.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.156;DP=136;Dels=0.00;FS=37.874;HaplotypeScore=8.5894;MLEAC=1;MLEAF=0.500;MQ=23.47;MQ0=4;MQRankSum=-3.644;QD=1.54;ReadPosRankSum=-2.913;SB=-1.068e+02 GT:AD:DP:GQ:PL 0/1:81,55:136:99:239,0,638 chrVIII 355 . T C 655 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.694;DP=55;Dels=0.00;FS=56.417;HaplotypeScore=5.8059;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=5;MQRankSum=3.912;QD=11.91;ReadPosRankSum=3.912;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:7,46:55:72:688,72,0 chrVIII 988 . C T 1193 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.144;DP=395;Dels=0.00;FS=101.985;HaplotypeScore=39.2762;MLEAC=2;MLEAF=1.00;MQ=14.76;MQ0=47;MQRankSum=6.773;QD=3.02;ReadPosRankSum=3.102;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:43,343:395:99:1226,123,0 chrVIII 1419 . T C 25.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.776;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.66;MQ0=27;MQRankSum=1.556;QD=0.45;ReadPosRankSum=-0.946;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:48,8:57:6:57,6,0 chrVIII 1495 . G A 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;DP=160;Dels=0.00;FS=31.667;HaplotypeScore=5.7042;MLEAC=1;MLEAF=0.500;MQ=10.45;MQ0=54;MQRankSum=3.228;QD=0.17;ReadPosRankSum=-0.414;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:154,5:160:57:57,0,136 chrVIII 1508 . A T 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688;DP=206;Dels=0.00;FS=56.239;HaplotypeScore=13.3573;MLEAC=1;MLEAF=0.500;MQ=10.65;MQ0=49;MQRankSum=3.780;QD=0.40;ReadPosRankSum=-0.299;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:198,8:206:99:113,0,117 chrVIII 1552 . C T 220.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.654;DP=305;Dels=0.00;FS=90.132;HaplotypeScore=4.8298;MLEAC=1;MLEAF=0.500;MQ=11.42;MQ0=15;MQRankSum=5.990;QD=0.72;ReadPosRankSum=1.965;SB=0.631 GT:AD:DP:GQ:PL 0/1:291,14:305:71:250,0,71 chrVIII 1567 . C T 217.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.595;DP=310;Dels=0.00;FS=91.503;HaplotypeScore=25.5554;MLEAC=1;MLEAF=0.500;MQ=11.67;MQ0=0;MQRankSum=5.979;QD=0.70;ReadPosRankSum=0.221;SB=-4.348e-03 GT:AD:DP:GQ:PL 0/1:296,14:310:99:247,0,114 chrVIII 1576 . G A 220.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;DP=291;Dels=0.00;FS=78.878;HaplotypeScore=34.9179;MLEAC=1;MLEAF=0.500;MQ=11.65;MQ0=3;MQRankSum=5.522;QD=0.76;ReadPosRankSum=-2.124;SB=-4.795e-03 GT:AD:DP:GQ:PL 0/1:276,15:291:92:250,0,92 chrVIII 1585 . G A 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.019;DP=251;Dels=0.00;FS=27.260;HaplotypeScore=30.0713;MLEAC=1;MLEAF=0.500;MQ=11.45;MQ0=7;MQRankSum=3.620;QD=0.50;ReadPosRankSum=-4.075;SB=-6.433e-03 GT:AD:DP:GQ:PL 0/1:235,15:251:99:156,0,105 chrVIII 1595 . T C 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;DP=203;Dels=0.00;FS=36.488;HaplotypeScore=27.8106;MLEAC=1;MLEAF=0.500;MQ=11.31;MQ0=9;MQRankSum=3.891;QD=0.34;ReadPosRankSum=-2.270;SB=-6.512e-03 GT:AD:DP:GQ:PL 0/1:194,6:203:99:100,0,116 chrVIII 1672 . A G 1204 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.134;DP=71;Dels=0.00;FS=37.952;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=14;MQRankSum=4.048;QD=16.96;ReadPosRankSum=4.243;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:7,64:71:82:1237,82,0 chrVIII 1693 . G A 1315 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.173;DP=76;Dels=0.00;FS=2.598;HaplotypeScore=6.7262;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=10;MQRankSum=2.892;QD=17.30;ReadPosRankSum=0.735;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:6,69:76:99:1348,150,0 chrVIII 1695 . T C 987 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.557;DP=76;Dels=0.00;FS=66.192;HaplotypeScore=6.7262;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=10;MQRankSum=5.660;QD=12.99;ReadPosRankSum=5.337;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:20,56:76:44:1020,44,0 chrVIII 1696 . A T 989 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.220;DP=76;Dels=0.00;FS=79.670;HaplotypeScore=6.7262;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=10;MQRankSum=5.420;QD=13.01;ReadPosRankSum=4.945;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:17,56:76:44:1022,44,0 chrVIII 1697 . G T 1053 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=77;Dels=0.00;FS=66.192;HaplotypeScore=5.0274;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=11;MQRankSum=5.880;QD=13.68;ReadPosRankSum=4.927;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:20,57:77:45:1086,45,0 chrVIII 1753 . G A 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.423;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=23.2162;MLEAC=1;MLEAF=0.500;MQ=16.16;MQ0=20;MQRankSum=2.058;QD=0.14;ReadPosRankSum=-4.492;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,13:108:45:45,0,405 chrVIII 1846 . A G 245 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=3;QD=10.21;SB=-1.506e-02 GT:AD:DP:GQ:PL 1/1:1,23:24:30:278,30,0 chrVIII 1852 . A C 112.27 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.391;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=26.28;MQ0=1;MQRankSum=-0.439;QD=6.24;ReadPosRankSum=3.367;SB=-2.285e-01 GT:AD:DP:GQ:PL 0/1:8,10:18:9:142,0,9 chrVIII 1871 . G A 140.13 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.71;MQ0=3;QD=10.78;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:3,10:13:18:173,18,0 chrVIII 5355 . T A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.129;DP=63;Dels=0.00;FS=90.172;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=13.72;MQ0=9;MQRankSum=3.397;QD=0.33;ReadPosRankSum=3.372;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:17,46:63:6:52,6,0 chrVIII 5489 . G A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.6622;MLEAC=2;MLEAF=1.00;MQ=18.66;MQ0=1;QD=0.74;SB=-2.674e+01 GT:AD:DP:GQ:PL 1/1:0,30:31:6:54,6,0 chrVIII 5556 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.28;MQ0=0;QD=0.36;SB=-8.080e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:6:52,6,0 chrVIII 5642 . T G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DP=14;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.73;MQ0=9;MQRankSum=0.731;QD=1.27;ReadPosRankSum=-0.731;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:7,7:14:6:49,6,0 chrVIII 5647 . C T 97.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.739;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=18.51;MQ0=9;MQRankSum=0.791;QD=4.86;ReadPosRankSum=-1.739;SB=-7.730e+01 GT:AD:DP:GQ:PL 1/1:7,13:20:15:130,15,0 chrVIII 5686 . G A 438 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.933;DP=33;Dels=0.00;FS=3.736;HaplotypeScore=8.4212;MLEAC=2;MLEAF=1.00;MQ=23.93;MQ0=6;MQRankSum=1.467;QD=13.27;ReadPosRankSum=1.067;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:3,29:33:48:471,48,0 chrVIII 5724 . C T 575 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.17;MQ0=4;QD=19.83;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:60:608,60,0 chrVIII 5759 . G A 95.51 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.25;MQ0=0;QD=19.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:12:128,12,0 chrVIII 5817 . C T 31.77 filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:63,6,0 chrVIII 5822 . G T 34.77 filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:66,6,0 chrVIII 5844 . C T 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=0;QD=8.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:56,6,0 chrVIII 5856 . G A 81.51 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.65;MQ0=0;QD=16.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:12:114,12,0 chrVIII 5865 . T G 67.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=0;QD=9.64;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:100,12,0 chrVIII 5874 . G A 81.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.733;DP=10;Dels=0.00;FS=16.532;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.65;MQ0=0;MQRankSum=0.480;QD=8.15;ReadPosRankSum=1.733;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:2,8:10:12:114,12,0 chrVIII 5896 . T C 95.39 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=20;Dels=0.00;FS=30.004;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=22.02;MQ0=1;MQRankSum=1.909;QD=4.77;ReadPosRankSum=2.758;SB=11.63 GT:AD:DP:GQ:PL 1/1:4,10:20:15:128,15,0 chrVIII 5898 . T C 98.39 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.510;DP=29;Dels=0.00;FS=46.411;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=26.07;MQ0=2;MQRankSum=-1.111;QD=3.39;ReadPosRankSum=3.510;SB=11.63 GT:AD:DP:GQ:PL 1/1:8,10:29:15:131,15,0 chrVIII 5905 . C A 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.802;DP=55;Dels=0.00;FS=86.466;HaplotypeScore=25.2378;MLEAC=1;MLEAF=0.500;MQ=22.78;MQ0=2;MQRankSum=1.244;QD=0.28;ReadPosRankSum=4.276;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:46,9:55:45:45,0,323 chrVIII 5998 . T G 1678 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.244;DP=193;Dels=0.00;FS=17.579;HaplotypeScore=4.7647;MLEAC=2;MLEAF=1.00;MQ=15.74;MQ0=33;MQRankSum=4.530;QD=8.69;ReadPosRankSum=1.494;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:49,143:193:99:1711,184,0 chrVIII 6038 . A G 39.97 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.74;MQ0=38;QD=0.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:42:9:72,9,0 chrVIII 6084 . C G 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.68;MQ0=32;MQRankSum=-0.564;QD=0.24;ReadPosRankSum=0.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,9:54:43:43,0,164 chrVIII 6098 . A G 275 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.12;MQ0=32;QD=3.99;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:5,64:69:36:308,36,0 chrVIII 6105 . A C 308 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.91;MQ0=31;QD=3.80;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:5,76:81:39:341,39,0 chrVIII 6149 . T G 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.396;DP=174;Dels=0.00;FS=4.023;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=16.74;MQ0=25;MQRankSum=-7.773;QD=0.29;ReadPosRankSum=0.786;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,90:174:81:81,0,546 chrVIII 6249 . G C 95.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;DP=55;Dels=0.00;FS=16.660;HaplotypeScore=17.5828;MLEAC=1;MLEAF=0.500;MQ=11.31;MQ0=28;MQRankSum=1.505;QD=1.73;ReadPosRankSum=-0.716;SB=1.06 GT:AD:DP:GQ:PL 0/1:19,36:55:16:125,0,16 chrVIII 6293 . G A 42.11 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.059;DP=50;Dels=0.00;FS=9.777;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.90;MQ0=31;MQRankSum=0.598;QD=0.84;ReadPosRankSum=-0.731;SB=-3.124e+00 GT:AD:DP:GQ:PL 0/1:33,17:50:13:72,0,13 chrVIII 6345 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=35;Dels=0.00;FS=12.304;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=14.81;MQ0=18;MQRankSum=-0.714;QD=0.34;ReadPosRankSum=0.714;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:18,17:35:6:43,6,0 chrVIII 6347 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.302;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.50;MQ0=18;MQRankSum=2.143;QD=0.35;ReadPosRankSum=-1.508;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:20,14:34:6:43,6,0 chrVIII 6475 . C T 169.01 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=4.3613;MLEAC=2;MLEAF=1.00;MQ=17.72;MQ0=0;QD=7.68;SB=-7.189e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:27:202,27,0 chrVIII 6528 . T A 1696 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.835;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=19.72;MQ0=1;MQRankSum=5.407;QD=17.48;ReadPosRankSum=4.444;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:14,83:97:99:1729,218,0 chrVIII 6529 . T G 1688 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.545;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=19.83;MQ0=1;MQRankSum=4.891;QD=17.22;ReadPosRankSum=4.604;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:15,83:98:99:1721,218,0 chrVIII 6531 . A C 1662 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.492;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=19.83;MQ0=1;MQRankSum=5.469;QD=16.96;ReadPosRankSum=3.701;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:14,84:98:99:1695,218,0 chrVIII 6569 . C G 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.877;DP=104;Dels=0.00;FS=1.508;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=22.67;MQ0=1;MQRankSum=5.187;QD=12.47;ReadPosRankSum=-2.733;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:14,88:104:99:1330,159,0 chrVIII 6592 . A G 396 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.309;DP=62;Dels=0.00;FS=50.475;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=25.51;MQ0=0;MQRankSum=1.275;QD=6.39;ReadPosRankSum=3.281;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:4,58:62:45:429,45,0 chrVIII 6594 . T C 391 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.052;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.13;MQ0=0;MQRankSum=3.329;QD=6.74;ReadPosRankSum=4.660;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:9,49:58:45:424,45,0 chrVIII 6599 . A G 374 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;QD=8.50;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:45:407,45,0 chrVIII 6600 . G A 397 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;QD=9.02;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:45:430,45,0 chrVIII 6602 . A G 413 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;QD=9.39;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:48:446,48,0 chrVIII 6612 . A T 449 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=8.16;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:48:482,48,0 chrVIII 6614 . C T 412 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=7.49;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:45:445,45,0 chrVIII 6619 . T C 366 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=7.79;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:42:399,42,0 chrVIII 6621 . T A 402 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=8.55;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:42:435,42,0 chrVIII 6624 . T C 354 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=7.53;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:39:387,39,0 chrVIII 6629 . C A 293 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=6.98;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,42:42:33:326,33,0 chrVIII 6632 . C T 232.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=5.80;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:27:265,27,0 chrVIII 6635 . G C 197.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.80;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,34:34:24:230,24,0 chrVIII 6636 . T G 195.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.74;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,34:34:24:228,24,0 chrVIII 6675 . G C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=0.25;SB=-3.248e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:6:50,6,0 chrVIII 6677 . C T 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=0.27;SB=-3.418e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:6:51,6,0 chrVIII 6686 . A C 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.411;DP=87;Dels=0.00;FS=10.959;HaplotypeScore=5.7470;MLEAC=2;MLEAF=1.00;MQ=26.81;MQ0=0;MQRankSum=2.393;QD=0.57;ReadPosRankSum=2.393;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:9:82,9,0 chrVIII 6687 . A G 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.725;DP=88;Dels=0.00;FS=16.254;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;MQRankSum=2.920;QD=0.51;ReadPosRankSum=2.920;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:3,85:88:9:77,9,0 chrVIII 6688 . G T 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.831;DP=88;Dels=0.00;FS=21.931;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;MQRankSum=3.135;QD=0.32;ReadPosRankSum=1.933;SB=-5.348e+02 GT:AD:DP:GQ:PL 1/1:4,84:88:6:59,6,0 chrVIII 6692 . T G 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.513;DP=100;Dels=0.00;FS=6.686;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=0;MQRankSum=1.689;QD=0.49;ReadPosRankSum=4.066;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:7,93:100:9:81,9,0 chrVIII 6697 . A G 145.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.243;DP=110;Dels=0.00;FS=25.114;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;MQRankSum=3.760;QD=1.32;ReadPosRankSum=1.736;SB=-7.411e+02 GT:AD:DP:GQ:PL 1/1:5,105:110:21:178,21,0 chrVIII 6700 . G A 291 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.962;DP=118;Dels=0.00;FS=27.981;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=0;MQRankSum=4.110;QD=2.47;ReadPosRankSum=1.537;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:6,112:118:36:324,36,0 chrVIII 6708 . T A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.843;DP=103;Dels=0.00;FS=35.571;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=25.12;MQ0=0;MQRankSum=5.174;QD=0.32;ReadPosRankSum=3.470;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:10,93:103:9:65,9,0 chrVIII 6711 . T C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.966;DP=103;Dels=0.00;FS=35.571;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=25.12;MQ0=0;MQRankSum=5.174;QD=0.32;ReadPosRankSum=3.113;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:10,93:103:9:65,9,0 chrVIII 6712 . T A 12.99 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.851;DP=105;Dels=0.00;FS=19.608;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=25.20;MQ0=0;MQRankSum=4.517;QD=0.12;ReadPosRankSum=3.581;SB=-8.828e+02 GT:AD:DP:GQ:PL 1/1:12,93:105:6:44,6,0 chrVIII 6718 . T C 406 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.910;DP=114;Dels=0.00;FS=36.337;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=25.14;MQ0=0;MQRankSum=5.204;QD=3.56;ReadPosRankSum=0.736;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:10,104:114:48:439,48,0 chrVIII 6720 . G C 419 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.466;DP=114;Dels=0.00;FS=36.337;HaplotypeScore=3.4666;MLEAC=2;MLEAF=1.00;MQ=25.14;MQ0=0;MQRankSum=5.204;QD=3.68;ReadPosRankSum=0.165;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:10,104:114:48:452,48,0 chrVIII 6721 . C T 412 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=114;Dels=0.00;FS=36.337;HaplotypeScore=3.4666;MLEAC=2;MLEAF=1.00;MQ=25.14;MQ0=0;MQRankSum=5.204;QD=3.61;ReadPosRankSum=-0.095;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:10,104:114:48:445,48,0 chrVIII 6734 . G A 403 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.299;DP=124;Dels=0.00;FS=32.576;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=24.47;MQ0=0;MQRankSum=5.134;QD=3.25;ReadPosRankSum=-3.262;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:10,114:124:48:436,48,0 chrVIII 6737 . G A 421 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=24.25;MQ0=1;QD=3.45;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:48:454,48,0 chrVIII 6740 . A C 399 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.925;DP=123;Dels=0.00;FS=28.771;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=23.79;MQ0=1;MQRankSum=5.035;QD=3.24;ReadPosRankSum=-3.309;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:10,113:123:48:432,48,0 chrVIII 6772 . C T 918 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=1;QD=8.12;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:951,102,0 chrVIII 6773 . G A 1002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.076;DP=113;Dels=0.00;FS=23.170;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=1;MQRankSum=4.709;QD=8.87;ReadPosRankSum=1.964;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:10,103:113:99:1035,105,0 chrVIII 6865 . T C 3908.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=31.02;MQ0=0;QD=24.58;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3908,414,0 chrVIII 6947 . A G 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.239;DP=128;Dels=0.00;FS=9.006;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;MQRankSum=-0.267;QD=23.60;ReadPosRankSum=3.307;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:4,124:128:99:3054,327,0 chrVIII 7000 . G A 1745 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;QD=20.77;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1778,192,0 chrVIII 7006 . T C 1574 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.49;MQ0=0;QD=21.86;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1607,174,0 chrVIII 7057 . A G 1166 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=17.94;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1199,126,0 chrVIII 7061 . G A 1229 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.12;MQ0=0;QD=20.15;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1262,126,0 chrVIII 7062 . C T 1214 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.32;MQ0=0;QD=20.23;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1247,126,0 chrVIII 7085 . A G 1292 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=0;MQRankSum=1.059;QD=16.56;ReadPosRankSum=2.387;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1325,138,0 chrVIII 7087 . T C 1356 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=8.865;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.59;MQ0=0;MQRankSum=1.597;QD=17.61;ReadPosRankSum=1.687;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1389,138,0 chrVIII 7090 . T C 1354 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;QD=16.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1387,144,0 chrVIII 7099 . T C 1110 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;QD=13.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1143,141,0 chrVIII 7102 . C T 1009 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=12.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1042,129,0 chrVIII 7103 . A T 1074 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=13.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1107,138,0 chrVIII 7107 . T G 1297 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.02;MQ0=0;QD=14.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1330,141,0 chrVIII 7113 . G T 1244 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.56;MQ0=0;QD=13.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1277,129,0 chrVIII 7118 . C G 1075 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.35;MQ0=0;QD=12.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1108,114,0 chrVIII 7119 . C A 1018 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.35;MQ0=0;QD=12.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1051,111,0 chrVIII 7129 . T A 902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=5.692;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=0;MQRankSum=-0.564;QD=10.13;ReadPosRankSum=1.693;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,88:89:96:935,96,0 chrVIII 7140 . T A 657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.750;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=0;MQRankSum=-1.608;QD=7.73;ReadPosRankSum=2.917;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:3,82:85:87:690,87,0 chrVIII 7141 . A T 655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.036;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=0;MQRankSum=-1.179;QD=7.71;ReadPosRankSum=2.846;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:3,82:85:87:688,87,0 chrVIII 7152 . C T 856 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=0;QD=10.70;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:90:889,90,0 chrVIII 7155 . C T 665 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=0;QD=9.64;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:78:698,78,0 chrVIII 7156 . T A 683 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=0;QD=9.90;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:78:716,78,0 chrVIII 7157 . G C 685 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=0;QD=9.93;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:78:718,78,0 chrVIII 7164 . C A 612 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.55;MQ0=0;QD=8.05;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:66:645,66,0 chrVIII 7168 . C A 553 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.60;MQ0=0;QD=7.58;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:60:586,60,0 chrVIII 7176 . C T 456 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.36;MQ0=0;QD=6.16;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:54:489,54,0 chrVIII 7205 . T C 343 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=8.37;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:39:376,39,0 chrVIII 7207 . T C 337 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.8729;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=8.22;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:39:370,39,0 chrVIII 7208 . A G 326 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.8729;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=7.95;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:39:359,39,0 chrVIII 7209 . T C 342 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.8729;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=8.34;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:39:375,39,0 chrVIII 7214 . A G 235 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=4.6616;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=5.73;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:33:268,33,0 chrVIII 7215 . C T 236 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=4.6616;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=5.76;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:33:269,33,0 chrVIII 7217 . A G 109.13 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=4.6616;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=2.66;SB=-3.261e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:18:142,18,0 chrVIII 7219 . A G 82.26 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.8798;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=2.01;SB=-3.503e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:15:115,15,0 chrVIII 7220 . G T 82.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=41;Dels=0.00;FS=2.684;HaplotypeScore=3.8798;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;MQRankSum=1.483;QD=2.01;ReadPosRankSum=-0.635;SB=-3.233e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:15:115,15,0 chrVIII 7221 . A T 103.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.8798;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;MQRankSum=-0.087;QD=2.52;ReadPosRankSum=-0.433;SB=-3.551e+02 GT:AD:DP:GQ:PL 1/1:1,39:41:18:136,18,0 chrVIII 7227 . A G 397 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=6.51;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:48:430,48,0 chrVIII 7228 . A G 430 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=7.05;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:48:463,48,0 chrVIII 7237 . G A 469 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=0;QD=7.11;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:51:502,51,0 chrVIII 7255 . G T 552 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.26;MQ0=3;QD=8.90;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:60:585,60,0 chrVIII 7262 . G A 598 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=3;QD=9.49;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:63:631,63,0 chrVIII 7387 . G C 1841 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.6552;MLEAC=2;MLEAF=1.00;MQ=38.81;MQ0=2;QD=21.16;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1874,198,0 chrVIII 7411 . C T 2023 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;QD=22.99;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2056,207,0 chrVIII 7426 . G C 2120 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=39.33;MQ0=1;QD=21.86;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2153,216,0 chrVIII 7477 . G A 1826 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=1;QD=21.74;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1859,189,0 chrVIII 7727 . A C 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.143;QD=23.64;ReadPosRankSum=2.331;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:2019,213,0 chrVIII 7741 . C T 1867 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.94;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1900,195,0 chrVIII 7823 . A G 2372 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=26.36;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2405,246,0 chrVIII 7825 . A G 2294 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=25.49;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2327,249,0 chrVIII 7938 . A C 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=13.7447;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;MQRankSum=-0.101;QD=23.98;ReadPosRankSum=1.042;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:3,117:124:99:3007,299,0 chrVIII 7965 . G C 3492.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=24.25;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,138:144:99:3492,363,0 chrVIII 7987 . G A 3652.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=24.19;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3652,384,0 chrVIII 8066 . A T 1787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=78;Dels=0.00;FS=2.783;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;MQRankSum=-1.407;QD=22.91;ReadPosRankSum=2.387;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1820,192,0 chrVIII 8080 . A G 1336 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.46;MQ0=0;MQRankSum=-1.675;QD=21.90;ReadPosRankSum=1.562;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1369,150,0 chrVIII 8084 . T C 1233 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=21.63;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1266,135,0 chrVIII 8086 . T C 1133 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=5.798;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;MQRankSum=-0.274;QD=19.88;ReadPosRankSum=1.672;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1166,123,0 chrVIII 8096 . G A 1103 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=18.69;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1136,114,0 chrVIII 8105 . A G 1128 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=17.62;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1161,123,0 chrVIII 8122 . G T 1086 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=16.21;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1119,117,0 chrVIII 8128 . G A 1067 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=15.03;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1100,114,0 chrVIII 8131 . G A 1013 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=14.07;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1046,111,0 chrVIII 8144 . C T 1164 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;QD=14.20;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1197,123,0 chrVIII 8151 . C T 1072 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.03;MQ0=0;QD=12.47;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1105,123,0 chrVIII 8165 . T C 1379 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=0;QD=14.83;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1412,153,0 chrVIII 8183 . G T 1538 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=0;QD=14.79;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1571,177,0 chrVIII 8210 . G A 1831 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.05;MQ0=0;QD=15.52;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1864,204,0 chrVIII 8233 . G A 1815 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.03;MQ0=0;QD=14.29;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1848,204,0 chrVIII 8248 . T C 1611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;MQRankSum=-0.119;QD=12.30;ReadPosRankSum=1.653;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:1644,183,0 chrVIII 8261 . G C 1436 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;QD=11.31;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1469,159,0 chrVIII 8267 . T C 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.41;MQ0=0;MQRankSum=-1.704;QD=11.72;ReadPosRankSum=1.704;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:1486,165,0 chrVIII 8295 . C G 1035 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.40;MQ0=0;QD=11.13;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1068,114,0 chrVIII 8307 . C T 916 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=64.5596;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=0;QD=10.53;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:949,99,0 chrVIII 8316 . G T 940 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.24;MQ0=0;QD=10.56;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:973,102,0 chrVIII 8360 . G A 2332 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=20.10;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2365,252,0 chrVIII 8399 . G T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.01;FS=0.000;HaplotypeScore=14.5447;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=20.75;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3362,357,0 chrVIII 8417 . G C 3045 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=20.30;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3078,324,0 chrVIII 8434 . T C 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;MQRankSum=-0.334;QD=18.03;ReadPosRankSum=1.607;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3026,318,0 chrVIII 8441 . T C 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=173;Dels=0.00;FS=2.772;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;MQRankSum=-0.817;QD=18.47;ReadPosRankSum=2.393;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3228,339,0 chrVIII 8813 . A G 4457.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.6894;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.64;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4457,475,0 chrVIII 9010 . T C 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=176;Dels=0.00;FS=6.061;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=-0.247;QD=17.59;ReadPosRankSum=2.902;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:3,172:176:99:3128,313,0 chrVIII 9035 . T C 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=184;Dels=0.00;FS=12.478;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=0.339;QD=14.03;ReadPosRankSum=3.336;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:4,179:184:99:2615,270,0 chrVIII 9047 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=15.99;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:2943,292,0 chrVIII 9077 . A G 2322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=176;Dels=0.00;FS=2.947;HaplotypeScore=12.6962;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;MQRankSum=-1.734;QD=13.19;ReadPosRankSum=2.422;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:2355,237,0 chrVIII 9080 . G A 2224 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=11.9510;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=13.40;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2257,234,0 chrVIII 9673 . A G 6145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=22.2489;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.452;QD=23.73;ReadPosRankSum=1.678;SB=-3.119e+03 GT:AD:DP:GQ:PL 1/1:1,256:259:99:6145,637,0 chrVIII 10046 . A T 4647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.0073;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-0.391;QD=24.98;ReadPosRankSum=1.713;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4647,475,0 chrVIII 10208 . G A 3221.02 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=20.65;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3254,333,0 chrVIII 10218 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=19.61;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3230,319,0 chrVIII 10242 . G T 112.26 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=149.6912;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=0.69;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:15:145,15,0 chrVIII 10411 . G A 4088.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7708;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=25.08;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4088,406,0 chrVIII 10434 . G C 3501.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=21.88;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3501,366,0 chrVIII 10455 . C T 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=153;Dels=0.00;FS=3.396;HaplotypeScore=5.8660;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=-0.668;QD=22.26;ReadPosRankSum=0.147;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3406,354,0 chrVIII 10670 . T C 3594.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.6607;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.89;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3594,376,0 chrVIII 10701 . G A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=23.24;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3486,355,0 chrVIII 11082 . T C 2828 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.94;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2861,300,0 chrVIII 11276 . T A 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=148;Dels=0.00;FS=3.129;HaplotypeScore=6.5984;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.351;QD=23.66;ReadPosRankSum=1.709;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3502,369,0 chrVIII 11308 . G A 3872.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=25.31;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3872,394,0 chrVIII 11515 . T C 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=167;Dels=0.00;FS=2.968;HaplotypeScore=3.5039;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.861;QD=23.03;ReadPosRankSum=2.420;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3846,408,0 chrVIII 11520 . T A 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=176;Dels=0.00;FS=5.942;HaplotypeScore=5.2802;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-0.190;QD=23.12;ReadPosRankSum=2.891;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:3,172:176:99:4069,415,0 chrVIII 11535 . T C 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.265;QD=22.38;ReadPosRankSum=1.712;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3804,397,0 chrVIII 11599 . A G 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=3.417;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.296;QD=22.66;ReadPosRankSum=1.648;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2820,294,0 chrVIII 11625 . C G 2834 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=25.30;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2867,294,0 chrVIII 11689 . G A 2183 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.40;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2216,228,0 chrVIII 11931 . T C 78.51 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.89;MQ0=12;QD=2.38;SB=-2.755e+01 GT:AD:DP:GQ:PL 1/1:2,31:33:12:111,12,0 chrVIII 11987 . C G 254 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.27;MQ0=28;QD=5.52;SB=-1.302e-02 GT:AD:DP:GQ:PL 1/1:14,32:46:30:287,30,0 chrVIII 12001 . A G 252 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.13;MQ0=24;QD=6.63;SB=-1.302e-02 GT:AD:DP:GQ:PL 1/1:3,35:38:30:285,30,0 chrVIII 12184 . A C 195.03 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.00;MQ0=33;QD=3.31;SB=-2.303e+01 GT:AD:DP:GQ:PL 1/1:13,46:59:24:228,24,0 chrVIII 12350 . A C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.55;MQ0=1;QD=3.18;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:47,6,0 chrVIII 12368 . C G 174.03 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.64;MQ0=1;QD=11.60;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:207,24,0 chrVIII 12409 . A T 166.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=0;MQRankSum=0.496;QD=10.38;ReadPosRankSum=1.488;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:1,13:16:21:199,21,0 chrVIII 12441 . C T 106.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.202;DP=15;Dels=0.00;FS=5.441;HaplotypeScore=13.6637;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=0;MQRankSum=-0.354;QD=7.08;ReadPosRankSum=-2.899;SB=2.74 GT:AD:DP:GQ:PL 1/1:4,10:15:15:139,15,0 chrVIII 12481 . T C 72.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.130;DP=35;Dels=0.00;FS=32.138;HaplotypeScore=28.9321;MLEAC=2;MLEAF=1.00;MQ=25.76;MQ0=0;MQRankSum=-1.374;QD=2.07;ReadPosRankSum=1.218;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:4,31:35:12:105,12,0 chrVIII 12505 . A G 347 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=31.556;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=0;MQRankSum=0.710;QD=6.43;ReadPosRankSum=2.359;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:2,52:54:42:380,42,0 chrVIII 12511 . T A 409 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.60;MQ0=0;QD=8.70;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:48:442,48,0 chrVIII 12512 . T C 397 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.60;MQ0=0;QD=8.45;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:48:430,48,0 chrVIII 12513 . A C 397 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.60;MQ0=0;QD=8.45;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:48:430,48,0 chrVIII 12520 . T C 421 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.15;MQ0=0;MQRankSum=0.000;QD=7.80;ReadPosRankSum=1.668;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:1,53:54:48:454,48,0 chrVIII 12522 . A G 428 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.15;MQ0=0;QD=7.93;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:51:461,51,0 chrVIII 12528 . G A 286 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=0;QD=5.72;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:42:319,42,0 chrVIII 12529 . G T 284 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=0;QD=5.68;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:42:317,42,0 chrVIII 12530 . C G 283 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=0;QD=5.66;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:42:316,42,0 chrVIII 12533 . G A 400 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=0;QD=6.78;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:54:433,54,0 chrVIII 12537 . C A 446 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=0;QD=7.43;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:54:479,54,0 chrVIII 12546 . T C 460 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=54.9199;MLEAC=2;MLEAF=1.00;MQ=26.12;MQ0=0;MQRankSum=0.735;QD=6.97;ReadPosRankSum=1.680;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:1,65:66:57:493,57,0 chrVIII 12548 . C T 463 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.260;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=54.9199;MLEAC=2;MLEAF=1.00;MQ=26.12;MQ0=0;MQRankSum=-1.470;QD=7.02;ReadPosRankSum=0.787;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:1,65:66:57:496,57,0 chrVIII 12555 . C T 442 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=0;QD=6.80;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:54:475,54,0 chrVIII 12557 . A G 372 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=0;QD=5.72;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:48:405,48,0 chrVIII 12563 . T C 438 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=0;QD=6.35;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:54:471,54,0 chrVIII 12605 . G A 223.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.22;MQ0=0;QD=5.19;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,43:43:27:256,27,0 chrVIII 12606 . G C 216.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.22;MQ0=0;QD=5.02;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,43:43:27:249,27,0 chrVIII 12608 . A G 221.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.22;MQ0=0;QD=5.14;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,43:43:27:254,27,0 chrVIII 12613 . T A 215.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.06;MQ0=0;MQRankSum=-2.198;QD=4.39;ReadPosRankSum=2.350;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:2,47:49:27:248,27,0 chrVIII 12616 . T A 239 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=32.29;MQ0=0;MQRankSum=-1.466;QD=4.60;ReadPosRankSum=1.466;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:30:272,30,0 chrVIII 12630 . A G 522 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=0;QD=11.35;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:60:555,60,0 chrVIII 12662 . A G 562 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.76;MQ0=0;QD=10.22;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:66:595,66,0 chrVIII 12664 . G A 597 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.10;MQ0=0;QD=10.29;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:69:630,69,0 chrVIII 12721 . T A 1586 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=16.18;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1619,180,0 chrVIII 12722 . T G 1544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=4.141;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=32.07;MQ0=0;MQRankSum=-1.732;QD=16.08;ReadPosRankSum=1.696;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1577,177,0 chrVIII 12758 . A G 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=33.20;MQ0=0;MQRankSum=-1.144;QD=20.23;ReadPosRankSum=1.608;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2299,258,0 chrVIII 12791 . C T 1917 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=37.39;MQ0=0;QD=18.98;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1950,210,0 chrVIII 12803 . G T 2220 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.02;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=21.14;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2253,234,0 chrVIII 12866 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=24.58;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2712,271,0 chrVIII 12931 . G A 1844 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=20.72;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1877,189,0 chrVIII 12972 . T C 1556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=94;Dels=0.00;FS=3.007;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;MQRankSum=-1.218;QD=16.55;ReadPosRankSum=2.397;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1589,168,0 chrVIII 12985 . C T 1627 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=16.11;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1660,174,0 chrVIII 13001 . G A 1808 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=16.74;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1841,186,0 chrVIII 13117 . T G 3062 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.55;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3095,319,0 chrVIII 13126 . T C 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=0.198;QD=22.01;ReadPosRankSum=1.706;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2960,306,0 chrVIII 13185 . A G 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=4.465;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.042;QD=21.28;ReadPosRankSum=1.619;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2651,270,0 chrVIII 13244 . C T 2688 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.17;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2721,273,0 chrVIII 13277 . A C 2920 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.54;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2953,303,0 chrVIII 13526 . A G 2760 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.8464;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.42;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2793,294,0 chrVIII 13589 . A G 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=119;Dels=0.00;FS=3.352;HaplotypeScore=6.5318;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.480;QD=25.18;ReadPosRankSum=1.703;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3030,315,0 chrVIII 13787 . A G 4831.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.4490;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.97;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4831,502,0 chrVIII 13851 . G A 4681.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=26.15;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4681,469,0 chrVIII 13901 . C T 4822.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=26.06;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4822,487,0 chrVIII 13934 . A G 4606.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.3633;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.50;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4606,484,0 chrVIII 13957 . G T 4263.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.80;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4263,448,0 chrVIII 14034 . A C 4491.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.57;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4491,457,0 chrVIII 14074 . C T 4935.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=25.84;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4935,499,0 chrVIII 14102 . T G 4815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=195;Dels=0.00;FS=3.216;HaplotypeScore=2.9332;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.950;QD=24.69;ReadPosRankSum=1.714;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4815,493,0 chrVIII 14130 . G C 3888.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=21.84;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3888,403,0 chrVIII 14146 . C T 3737.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.9952;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.35;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3737,382,0 chrVIII 14381 . T C 2306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=103;Dels=0.00;FS=4.288;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.102;QD=22.39;ReadPosRankSum=1.698;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2339,249,0 chrVIII 14452 . T G 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=3.431;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.546;QD=25.22;ReadPosRankSum=1.705;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3279,337,0 chrVIII 14584 . G C 1994 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=14.3545;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=18.64;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2027,228,0 chrVIII 14636 . A G 3744.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.0534;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=24.96;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3744,393,0 chrVIII 14669 . C T 4470.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.6141;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=25.54;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4470,451,0 chrVIII 14685 . T C 4995.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=24.37;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4995,514,0 chrVIII 14784 . A G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.231;DP=233;Dels=0.00;FS=4.458;HaplotypeScore=10.7880;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;MQRankSum=-0.537;QD=12.95;ReadPosRankSum=4.500;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:7,224:233:99:3051,362,0 chrVIII 14865 . G A 1201 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=34.74;MQ0=0;QD=17.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1234,126,0 chrVIII 15239 . A G 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.256;QD=24.56;ReadPosRankSum=1.691;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4151,427,0 chrVIII 15293 . C T 4046.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4046,418,0 chrVIII 15928 . T C 4006.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.85;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4006,421,0 chrVIII 16308 . T C 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=4.904;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.820;QD=21.93;ReadPosRankSum=1.706;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2994,303,0 chrVIII 16326 . G A 2688 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.03;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2721,276,0 chrVIII 16403 . G A 3129 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=27.21;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:3162,316,0 chrVIII 16495 . G C 3057 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=24.46;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3090,321,0 chrVIII 16634 . C T 4220.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=25.73;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4220,439,0 chrVIII 16671 . A G 4427.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=26.04;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4427,469,0 chrVIII 16698 . G A 4374.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=25.28;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4374,439,0 chrVIII 16733 . G A 4334.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.6469;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=22.34;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4334,448,0 chrVIII 16735 . G A 4575.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.3151;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=23.22;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4575,460,0 chrVIII 16886 . G C 4944.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=24.48;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4944,520,0 chrVIII 16906 . A C 4215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=0.204;QD=24.65;ReadPosRankSum=1.712;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4215,445,0 chrVIII 17120 . A C 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=38.63;MQ0=0;MQRankSum=-1.315;QD=19.48;ReadPosRankSum=1.706;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2624,267,0 chrVIII 17127 . T A 2350 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=99.3398;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=0;QD=18.65;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2383,240,0 chrVIII 17132 . T G 2154 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=103.9910;MLEAC=2;MLEAF=1.00;MQ=36.03;MQ0=0;QD=17.10;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2187,228,0 chrVIII 17151 . A G 2063 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;QD=16.37;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2096,222,0 chrVIII 17157 . A G 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;MQRankSum=-0.278;QD=16.24;ReadPosRankSum=1.706;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2160,225,0 chrVIII 17528 . G C 2343 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=18.7275;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.69;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2376,255,0 chrVIII 17641 . G A 2938 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.47;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2971,298,0 chrVIII 18917 . G A 5351.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.6867;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.98;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:0,202:206:99:5351,541,0 chrVIII 19013 . G A 5755.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=4.8549;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=25.13;SB=-3.139e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5755,586,0 chrVIII 19035 . G A 5495.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=25.21;SB=-2.959e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5495,547,0 chrVIII 19101 . A G 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=167;Dels=0.00;FS=5.992;HaplotypeScore=6.5260;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.067;QD=21.26;ReadPosRankSum=2.958;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:3,163:167:99:3551,364,0 chrVIII 19172 . G A 5379.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=24.56;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5379,550,0 chrVIII 19760 . T A 4876.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.37;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4876,490,0 chrVIII 19808 . G A 4614.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=18.4409;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4614,472,0 chrVIII 19914 . C T 4610.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.61;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4610,466,0 chrVIII 20117 . T C 6085.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=259;Dels=0.00;FS=3.003;HaplotypeScore=37.5543;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.102;QD=23.49;ReadPosRankSum=2.430;SB=-3.251e+03 GT:AD:DP:GQ:PL 1/1:2,251:259:99:6085,634,0 chrVIII 20294 . G T 5422.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.47;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5422,565,0 chrVIII 20950 . C T 5132.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.2368;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.28;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5132,523,0 chrVIII 21911 . C A 3811.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.5416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3811,400,0 chrVIII 24674 . C T 6039.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=18.6294;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.65;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:6039,607,0 chrVIII 25432 . G A 5536.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.60;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5536,586,0 chrVIII 25945 . G A 3878.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=27.12;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3878,388,0 chrVIII 26177 . C T 4085.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.4931;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.84;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4085,432,0 chrVIII 26179 . T C 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=187;Dels=0.00;FS=3.751;HaplotypeScore=3.4931;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=0.627;QD=22.19;ReadPosRankSum=0.328;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4149,427,0 chrVIII 27032 . C G 3499.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.3199;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.47;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3499,375,0 chrVIII 27733 . T C 2958 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.98;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,138:141:99:2991,318,0 chrVIII 27988 . A C 2747 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2780,294,0 chrVIII 28030 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.94;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:3050,312,0 chrVIII 28073 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2441,255,0 chrVIII 28758 . C T 5517.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=17.9229;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5517,553,0 chrVIII 29709 . T A 3692.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3692,364,0 chrVIII 29809 . G A 2801 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.1269;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.01;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2834,283,0 chrVIII 29863 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=15.9069;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.08;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2618,264,0 chrVIII 30051 . C T 2770 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.47;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,114:118:99:2803,282,0 chrVIII 30556 . T C 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=3.163;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.314;QD=25.19;ReadPosRankSum=1.643;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2980,306,0 chrVIII 30659 . T C 2546 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.02;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2579,264,0 chrVIII 30979 . C T 2702 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.5053;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2735,285,0 chrVIII 31313 . G A 3088 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=21.59;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3121,316,0 chrVIII 31318 . A G 3106 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7281;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.57;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3139,327,0 chrVIII 31583 . T C 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.361;DP=163;Dels=0.00;FS=16.002;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.386;QD=24.48;ReadPosRankSum=3.361;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:4,157:163:99:3990,409,0 chrVIII 32029 . G A 4806.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.4886;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.91;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4806,505,0 chrVIII 32836 . G T 501 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=13.0288;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=12.52;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:0,39:40:60:534,60,0 chrVIII 32859 . G A 59.97 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.99;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:92,9,0 chrVIII 33105 . C T 1536 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=26.03;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1569,162,0 chrVIII 33337 . G A 2611 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2644,267,0 chrVIII 34071 . C T 3850.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:3850,402,0 chrVIII 34368 . A G 2985 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3018,310,0 chrVIII 34565 . G C 3418.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.8184;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.95;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3418,360,0 chrVIII 34710 . A G 4017.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.22;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4017,424,0 chrVIII 34938 . A G 5218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=225;Dels=0.00;FS=3.021;HaplotypeScore=12.7439;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.477;QD=23.19;ReadPosRankSum=2.417;SB=-3.144e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:5218,532,0 chrVIII 35149 . C T 2269 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.8918;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.21;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,103:107:99:2302,243,0 chrVIII 35271 . T G 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.744;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.415;QD=26.32;ReadPosRankSum=3.794;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:5,152:157:99:4133,427,0 chrVIII 35378 . A G 4634.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.6105;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=26.18;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4634,498,0 chrVIII 36292 . T G 1386 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.18;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1419,144,0 chrVIII 36805 . G A 5114.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.83;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5114,517,0 chrVIII 37489 . G A 6817.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=18.3244;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.16;SB=-2.985e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:6817,694,0 chrVIII 37931 . A G 7514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=26.3542;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.220;QD=24.01;ReadPosRankSum=1.721;SB=-3.299e+03 GT:AD:DP:GQ:PL 1/1:1,310:313:99:7514,781,0 chrVIII 38733 . T C 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.453;QD=25.37;ReadPosRankSum=1.686;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3805,394,0 chrVIII 39238 . G C 7115.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=17.5226;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.96;SB=-2.935e+03 GT:AD:DP:GQ:PL 1/1:0,293:297:99:7115,730,0 chrVIII 39521 . C A 3350.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=144.6074;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=19.82;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3350,340,0 chrVIII 40764 . C T 4793.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.4879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4793,505,0 chrVIII 40881 . C T 4787.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.8551;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.82;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4787,487,0 chrVIII 40899 . T C 4052.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.5174;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.02;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4052,424,0 chrVIII 41245 . T A 3293.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.86;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3293,345,0 chrVIII 41310 . T C 2999 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3032,307,0 chrVIII 41694 . T A 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.898;QD=23.16;ReadPosRankSum=1.707;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3206,336,0 chrVIII 41712 . G A 3324.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=24.09;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3324,334,0 chrVIII 41934 . C T 5486.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.4300;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=24.94;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5486,547,0 chrVIII 42222 . G A 4011.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.89;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4011,418,0 chrVIII 42238 . A G 4542.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.2610;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.60;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4542,472,0 chrVIII 42616 . G A 4728.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=25.70;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4728,484,0 chrVIII 42646 . G A 3709.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.0967;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.48;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3709,373,0 chrVIII 42657 . T C 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=166;Dels=0.00;FS=3.724;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.703;QD=21.69;ReadPosRankSum=1.711;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3600,378,0 chrVIII 42709 . C T 3934.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.0813;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.87;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3934,397,0 chrVIII 42789 . C T 4318.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=20.4256;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4318,442,0 chrVIII 42880 . T C 3417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=146;Dels=0.00;FS=3.020;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.093;QD=23.40;ReadPosRankSum=2.416;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3417,357,0 chrVIII 42946 . T C 3866.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.31;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3866,400,0 chrVIII 43614 . C T 3781.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.6285;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.72;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3781,379,0 chrVIII 43881 . C T 4727.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=16.8966;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.75;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4727,481,0 chrVIII 43928 . G T 5006.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=15.9949;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.91;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5006,508,0 chrVIII 44670 . A G 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=119;Dels=0.00;FS=7.509;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.990;QD=22.21;ReadPosRankSum=2.387;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2676,279,0 chrVIII 44691 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=20.94;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2441,243,0 chrVIII 44706 . G A 2096 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=17.18;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2129,213,0 chrVIII 44715 . A G 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=4.136;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-1.214;QD=16.04;ReadPosRankSum=1.705;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2086,222,0 chrVIII 44969 . A G 4080.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.31;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4080,427,0 chrVIII 45099 . C G 3850.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=20.81;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3850,405,0 chrVIII 45102 . C T 3986.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=22.39;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3986,400,0 chrVIII 45773 . G A 1606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.498;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.4644;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.749;QD=21.41;ReadPosRankSum=-1.545;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1639,135,0 chrVIII 46007 . A G 3024 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.39;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3057,312,0 chrVIII 46055 . A G 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.765;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-1.632;QD=23.18;ReadPosRankSum=1.707;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3232,334,0 chrVIII 46074 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.24;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2969,295,0 chrVIII 46079 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.36;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2940,306,0 chrVIII 46220 . A T 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.658;QD=24.02;ReadPosRankSum=1.683;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3387,337,0 chrVIII 46562 . T C 4367.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.24;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4367,451,0 chrVIII 46772 . C T 4259.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.35;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4259,427,0 chrVIII 47072 . A G 5896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=239;Dels=0.00;FS=3.661;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.104;QD=24.67;ReadPosRankSum=1.659;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:1,236:239:99:5896,595,0 chrVIII 47159 . C T 7838.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-4.292e+03 GT:AD:DP:GQ:PL 1/1:0,315:317:99:7838,787,0 chrVIII 47341 . A G 7199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=17.3195;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.224;QD=24.00;ReadPosRankSum=1.663;SB=-3.443e+03 GT:AD:DP:GQ:PL 1/1:1,299:300:99:7199,745,0 chrVIII 47642 . G A 6887.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=13.1129;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.89;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:6887,694,0 chrVIII 48214 . G A 7923.01 filter AC=2;AF=1.00;AN=2;DP=389;Dels=0.00;FS=0.000;HaplotypeScore=9.1398;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=20.37;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,388:388:99:7923,814,0 chrVIII 48299 . T C 5053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.409;DP=303;Dels=0.00;FS=5.030;HaplotypeScore=12.0500;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-0.395;QD=16.68;ReadPosRankSum=2.954;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:4,299:303:99:5053,532,0 chrVIII 49107 . A C 7174.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=40.3395;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.83;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,298:301:99:7174,748,0 chrVIII 49817 . A C 5943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=257;Dels=0.00;FS=1.954;HaplotypeScore=20.3172;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.190;QD=23.12;ReadPosRankSum=2.166;SB=-3.063e+03 GT:AD:DP:GQ:PL 1/1:4,253:257:99:5943,625,0 chrVIII 50351 . T C 7421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=329;Dels=0.00;FS=10.337;HaplotypeScore=26.2896;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.031;QD=22.56;ReadPosRankSum=2.960;SB=-4.071e+03 GT:AD:DP:GQ:PL 1/1:3,323:329:99:7421,766,0 chrVIII 53843 . T C 4081.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.67;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4081,427,0 chrVIII 53882 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.9672;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.60;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4060,412,0 chrVIII 54245 . A G 4108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=174;Dels=0.00;FS=5.985;HaplotypeScore=12.6786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.387;QD=23.61;ReadPosRankSum=2.867;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:4108,430,0 chrVIII 54302 . C T 2921 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.3894;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.75;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2954,295,0 chrVIII 54471 . A T 5482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=214;Dels=0.00;FS=5.109;HaplotypeScore=21.6853;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.583;QD=25.62;ReadPosRankSum=1.700;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:5482,559,0 chrVIII 55457 . G C 5686.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.53;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:5686,589,0 chrVIII 55458 . G C 5727.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.68;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:5727,586,0 chrVIII 55990 . G T 4457.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=23.96;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4457,457,0 chrVIII 56225 . T C 2150 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=17.06;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2183,234,0 chrVIII 56250 . C T 2531 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=11.8855;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=21.09;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2564,261,0 chrVIII 56252 . A G 2481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;MQRankSum=-0.910;QD=19.85;ReadPosRankSum=2.410;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:2,121:125:99:2514,261,0 chrVIII 56351 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=23.49;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3500,352,0 chrVIII 56364 . T G 2844 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=22.22;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2877,303,0 chrVIII 56423 . C T 630.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;DP=112;Dels=0.00;FS=0.800;HaplotypeScore=19.5782;MLEAC=1;MLEAF=0.500;MQ=41.10;MQ0=0;MQRankSum=-5.748;QD=5.63;ReadPosRankSum=5.778;SB=-3.490e+02 GT:AD:DP:GQ:PL 0/1:60,50:112:99:660,0,106 chrVIII 56538 . T A 1080 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=21.18;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1113,111,0 chrVIII 56604 . G A 2329 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=26.17;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:2362,234,0 chrVIII 56867 . T C 5401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=227;Dels=0.00;FS=3.029;HaplotypeScore=13.2727;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.602;QD=23.79;ReadPosRankSum=2.417;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:2,224:227:99:5401,568,0 chrVIII 57176 . G A 3994.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3994,418,0 chrVIII 57484 . A G 2483 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.42;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2516,258,0 chrVIII 57580 . A G 2375 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=24.48;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,94:97:99:2408,246,0 chrVIII 57605 . T C 2441 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=25.43;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2474,252,0 chrVIII 57698 . G A 2442 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.92;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2475,261,0 chrVIII 57836 . T C 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=136;Dels=0.00;FS=2.894;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.847;QD=24.75;ReadPosRankSum=2.413;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3366,354,0 chrVIII 57905 . G A 4348.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.02;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4348,436,0 chrVIII 57977 . T C 5181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=207;Dels=0.00;FS=2.526;HaplotypeScore=10.1748;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.000;QD=25.03;ReadPosRankSum=2.907;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:3,203:207:99:5181,541,0 chrVIII 58040 . C T 5780.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=16.0666;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.39;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5780,595,0 chrVIII 58390 . A G 5575.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=23.23;SB=-3.336e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5575,577,0 chrVIII 58411 . A T 5868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=250;Dels=0.00;FS=6.322;HaplotypeScore=11.1208;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=0.928;QD=23.47;ReadPosRankSum=1.595;SB=-3.477e+03 GT:AD:DP:GQ:PL 1/1:2,248:250:99:5868,592,0 chrVIII 58546 . G A 6943.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=18.6252;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.53;SB=-3.157e+03 GT:AD:DP:GQ:PL 1/1:0,280:283:99:6943,694,0 chrVIII 58620 . T C 5176.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.7923;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=23.21;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5176,535,0 chrVIII 58670 . A C 3915.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.7579;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;MQRankSum=-0.297;QD=18.64;ReadPosRankSum=1.699;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:3915,411,0 chrVIII 58676 . A G 3786.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;MQRankSum=1.954;QD=18.11;ReadPosRankSum=2.284;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:2,206:209:99:3786,399,0 chrVIII 58677 . A G 3825.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.418;DP=207;Dels=0.00;FS=2.348;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;MQRankSum=-2.128;QD=18.48;ReadPosRankSum=3.367;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:4,203:207:99:3825,397,0 chrVIII 58723 . A G 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.1820;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-1.052;QD=18.42;ReadPosRankSum=3.390;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:4,196:201:99:3703,388,0 chrVIII 58733 . A T 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-0.286;QD=19.96;ReadPosRankSum=2.386;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:2,191:193:99:3853,382,0 chrVIII 59106 . T C 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.649;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.7641;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.578;QD=22.10;ReadPosRankSum=2.705;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:3,69:73:99:1646,180,0 chrVIII 59222 . G C 2584 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2617,273,0 chrVIII 59575 . G A 5199.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.9428;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:0,236:240:99:5199,526,0 chrVIII 59801 . T C 5045.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.0803;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=24.37;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5045,523,0 chrVIII 59916 . C T 4888.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.1332;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.84;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4888,487,0 chrVIII 59936 . G C 4744.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=20.72;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4744,490,0 chrVIII 60191 . C T 4700.01 SnpCluster AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=24.61;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4700,481,0 chrVIII 60199 . G A 3183 SnpCluster AC=2;AF=1.00;AN=2;DP=188;Dels=0.05;FS=0.000;HaplotypeScore=1.9198;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=16.93;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3216,383,0 chrVIII 60200 . A G 3131 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.807;DP=187;Dels=0.00;FS=15.252;HaplotypeScore=1.9198;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=0.256;QD=16.74;ReadPosRankSum=4.668;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:9,178:187:99:3164,378,0 chrVIII 60451 . T G 2650 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.84;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2683,279,0 chrVIII 60493 . T C 2790 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=12.0978;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.87;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2823,294,0 chrVIII 60764 . T C 3570.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.03;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3570,364,0 chrVIII 60785 . C T 3150 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.59;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3183,325,0 chrVIII 61047 . G T 2931 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.24;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2964,303,0 chrVIII 61049 . C T 2939 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.30;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2972,303,0 chrVIII 61125 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.29;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3610,364,0 chrVIII 61373 . A G 2649 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.3246;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.65;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2682,279,0 chrVIII 62234 . C T 2823 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2856,289,0 chrVIII 62587 . G A 3983.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.0696;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.13;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3983,403,0 chrVIII 62702 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=21.40;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1938,198,0 chrVIII 62711 . A C 1737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-0.460;QD=21.99;ReadPosRankSum=1.644;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1770,183,0 chrVIII 62723 . T A 1634 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.95;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1667,168,0 chrVIII 62860 . T C 71.51 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=2.86;SB=-1.085e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:12:104,12,0 chrVIII 62972 . C T 2092 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=26.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:2125,219,0 chrVIII 63279 . C T 3874.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=24.21;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3874,394,0 chrVIII 63315 . C G 2674 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=20.57;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,124:130:99:2707,288,0 chrVIII 63324 . T G 2726 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.6398;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=21.30;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,122:128:99:2759,285,0 chrVIII 63396 . G A 4400.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.72;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4400,460,0 chrVIII 63582 . T C 4171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.028;QD=22.55;ReadPosRankSum=1.713;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4171,441,0 chrVIII 63583 . T G 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.936;QD=22.44;ReadPosRankSum=1.639;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4241,445,0 chrVIII 63614 . T C 4350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=187;Dels=0.00;FS=3.034;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.217;QD=23.26;ReadPosRankSum=2.423;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4350,460,0 chrVIII 63837 . T C 4289.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=25.08;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4289,439,0 chrVIII 63931 . T C 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=166;Dels=0.00;FS=6.658;HaplotypeScore=13.4883;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.078;QD=20.85;ReadPosRankSum=2.419;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:3461,366,0 chrVIII 64083 . C T 2834 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.4073;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.85;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2867,286,0 chrVIII 64224 . G A 1702 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=21.82;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1735,177,0 chrVIII 64236 . G A 1509 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=21.25;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1542,156,0 chrVIII 64282 . C T 964 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=22.42;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,42:43:99:997,99,0 chrVIII 64292 . A T 894 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=21.80;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:93:927,93,0 chrVIII 64360 . A T 258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.187;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.091;QD=13.58;ReadPosRankSum=1.369;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:1,18:19:30:291,30,0 chrVIII 64407 . C T 628 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.93;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:69:661,69,0 chrVIII 64729 . G T 3338.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=25.48;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3338,345,0 chrVIII 64748 . A G 2903 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.50;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2936,312,0 chrVIII 64913 . C T 3181 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.74;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3214,322,0 chrVIII 65200 . A G 6236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=255;Dels=0.00;FS=8.480;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.797;QD=24.45;ReadPosRankSum=2.382;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:2,252:255:99:6236,658,0 chrVIII 65284 . G A 4384.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4964;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.36;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4384,445,0 chrVIII 65380 . A G 5418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.083;QD=23.66;ReadPosRankSum=1.672;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5418,562,0 chrVIII 65403 . T C 5629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.635;DP=244;Dels=0.00;FS=12.281;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.415;QD=23.07;ReadPosRankSum=3.732;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:5,238:244:99:5629,577,0 chrVIII 65566 . A G 4733.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.4230;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.91;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4733,490,0 chrVIII 65967 . C T 2483 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=25.60;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2516,255,0 chrVIII 65979 . A G 2068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.628;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;MQRankSum=-0.730;QD=24.92;ReadPosRankSum=1.565;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:2101,216,0 chrVIII 66117 . G A 2402 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1162;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=21.64;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2435,249,0 chrVIII 66280 . C T 5921.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.0763;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=26.79;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5921,601,0 chrVIII 66482 . G A 8793.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.310;DP=362;Dels=0.00;FS=3.022;HaplotypeScore=16.9046;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.396;QD=24.29;ReadPosRankSum=-1.089;SB=-5.006e+03 GT:AD:DP:GQ:PL 1/1:1,361:362:99:8793,871,0 chrVIII 66559 . A G 4636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=758.7119;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;MQRankSum=-0.604;QD=15.25;ReadPosRankSum=1.721;SB=-3.507e+03 GT:AD:DP:GQ:PL 1/1:1,303:304:99:4636,487,0 chrVIII 66700 . G A 6963.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=31.3693;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.90;SB=-3.614e+03 GT:AD:DP:GQ:PL 1/1:0,316:318:99:6963,697,0 chrVIII 67629 . G T 2176 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=18.1831;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=13.19;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:2209,240,0 chrVIII 67971 . C T 5232.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=23.9632;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.68;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,250:253:99:5232,544,0 chrVIII 68025 . G A 5638.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.11;SB=-2.956e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5638,592,0 chrVIII 68121 . C T 4630.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.2575;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.11;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4630,469,0 chrVIII 68259 . C A 4359.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.59;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4359,457,0 chrVIII 68352 . T C 4198.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.4962;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.69;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4198,430,0 chrVIII 68367 . C T 4116.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.13;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4116,421,0 chrVIII 68508 . A C 4435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=3.672;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.186;QD=23.97;ReadPosRankSum=1.657;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4435,463,0 chrVIII 68986 . C T 6637.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.05;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,263:265:99:6637,667,0 chrVIII 69126 . G A 3949.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.82;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3949,397,0 chrVIII 69180 . G A 5385.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5385,550,0 chrVIII 69672 . C T 4720.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.82;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4720,481,0 chrVIII 70542 . A G 4749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=7.1865;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.486;QD=20.83;ReadPosRankSum=1.717;SB=-3.150e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:4749,487,0 chrVIII 70548 . T C 4563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.657;DP=226;Dels=0.00;FS=4.324;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-1.228;QD=20.19;ReadPosRankSum=3.357;SB=-3.045e+03 GT:AD:DP:GQ:PL 1/1:5,219:226:99:4563,469,0 chrVIII 70653 . G A 5007.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.01;FS=0.000;HaplotypeScore=15.4201;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=18.97;SB=-3.393e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5007,505,0 chrVIII 70663 . C T 5336.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=15.2913;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.14;SB=-3.709e+03 GT:AD:DP:GQ:PL 1/1:0,262:265:99:5336,535,0 chrVIII 70875 . C A 6627.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=17.2781;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=24.27;SB=-3.143e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:6627,700,0 chrVIII 71987 . A G 2092 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=20.12;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2125,219,0 chrVIII 72011 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.06;MQ0=0;QD=17.94;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1917,195,0 chrVIII 72247 . C T 4187.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=25.22;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4187,421,0 chrVIII 72400 . A G 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=154;Dels=0.00;FS=3.003;HaplotypeScore=12.6950;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.375;QD=24.51;ReadPosRankSum=2.354;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3775,396,0 chrVIII 72697 . C G 4834.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.66;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4834,499,0 chrVIII 77502 . A G 4196.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.3621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4196,447,0 chrVIII 77694 . G A 4240.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.30;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4240,444,0 chrVIII 77766 . C T 4167.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.15;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4167,433,0 chrVIII 77853 . C T 3437.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3437,357,0 chrVIII 77919 . G A 4088.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.0845;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.46;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4088,432,0 chrVIII 78204 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.01;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3702,373,0 chrVIII 78570 . C T 2265 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=23.11;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2298,228,0 chrVIII 78572 . C T 2234 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=23.27;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2267,225,0 chrVIII 78707 . T A 1425 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.51;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1458,147,0 chrVIII 78752 . A G 944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.014;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.849;QD=18.51;ReadPosRankSum=2.354;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:977,105,0 chrVIII 78809 . G C 568 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.6972;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=21.04;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:60:601,60,0 chrVIII 79037 . A G 2229 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=25.33;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2262,228,0 chrVIII 79061 . G A 2284 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=25.10;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2317,234,0 chrVIII 79120 . C T 2820 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.4600;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.31;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2853,297,0 chrVIII 79208 . G A 3039 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.02;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3072,318,0 chrVIII 79319 . A T 3556.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=26.94;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3556,355,0 chrVIII 79512 . T C 2943 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2976,309,0 chrVIII 79756 . T A 3295.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.54;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3295,325,0 chrVIII 79894 . T A 3089 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=22.38;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3122,318,0 chrVIII 79902 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9905;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.39;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3071,310,0 chrVIII 79937 . T G 3529.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.22;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3529,367,0 chrVIII 80012 . C G 3991.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.19;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,160:165:99:3991,418,0 chrVIII 80068 . G A 3759.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2445;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=24.10;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3759,373,0 chrVIII 80077 . A G 3417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=159;Dels=0.00;FS=9.978;HaplotypeScore=6.6818;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-0.930;QD=21.49;ReadPosRankSum=2.816;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:3,155:159:99:3417,355,0 chrVIII 80210 . G C 4142.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=18.6475;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.65;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4142,430,0 chrVIII 80249 . G T 3702.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.5782;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=25.01;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3702,370,0 chrVIII 80479 . A G 2375 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=19.79;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2408,249,0 chrVIII 80498 . A G 2214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.051;DP=124;Dels=0.00;FS=1.644;HaplotypeScore=96.3957;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=1.708;QD=17.85;ReadPosRankSum=1.755;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:6,118:124:99:2247,240,0 chrVIII 80825 . G A 2694 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.63;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2727,288,0 chrVIII 80882 . A G 4343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=172;Dels=0.00;FS=9.594;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=2.248;QD=25.25;ReadPosRankSum=2.406;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:4343,460,0 chrVIII 81666 . G C 2864 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=24.48;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2897,297,0 chrVIII 81685 . A G 2479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=1.020;QD=23.17;ReadPosRankSum=1.700;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2512,264,0 chrVIII 81881 . G A 107.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;DP=68;Dels=0.01;FS=63.185;HaplotypeScore=10.3280;MLEAC=1;MLEAF=0.500;MQ=50.32;MQ0=0;MQRankSum=0.423;QD=1.57;ReadPosRankSum=-1.255;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:34,32:67:99:137,0,244 chrVIII 81886 . G A 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.265;DP=70;Dels=0.00;FS=67.618;HaplotypeScore=14.2714;MLEAC=1;MLEAF=0.500;MQ=52.25;MQ0=0;MQRankSum=0.385;QD=1.13;ReadPosRankSum=-2.694;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,26:70:99:109,0,303 chrVIII 82223 . T C 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=3.041;HaplotypeScore=9.8365;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.900;QD=24.74;ReadPosRankSum=2.361;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3439,354,0 chrVIII 82351 . A C 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.853;QD=23.47;ReadPosRankSum=1.680;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3178,333,0 chrVIII 82408 . A G 3986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=165;Dels=0.00;FS=6.263;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.307;QD=24.16;ReadPosRankSum=2.405;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3986,415,0 chrVIII 82486 . G C 3504.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.00;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,142:146:99:3504,361,0 chrVIII 82509 . A G 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.691;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.595;QD=23.29;ReadPosRankSum=1.679;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:3130,319,0 chrVIII 82570 . T A 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-1.193;QD=23.75;ReadPosRankSum=1.711;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3967,403,0 chrVIII 82588 . G A 4248.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.60;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4248,430,0 chrVIII 83128 . T C 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=140;Dels=0.00;FS=9.736;HaplotypeScore=20.0600;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.263;QD=20.15;ReadPosRankSum=2.827;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:3,131:140:99:2854,300,0 chrVIII 83436 . C A 2977 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=22.38;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3010,306,0 chrVIII 83441 . C T 3041 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=22.53;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3074,310,0 chrVIII 83454 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=24.46;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3261,325,0 chrVIII 83700 . T C 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=128;Dels=0.00;FS=3.185;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.368;QD=22.87;ReadPosRankSum=1.705;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2961,315,0 chrVIII 83781 . A T 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=122;Dels=0.00;FS=4.236;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.057;QD=24.52;ReadPosRankSum=1.675;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3024,306,0 chrVIII 83838 . T C 2903 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.68;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2936,303,0 chrVIII 83933 . G A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.02;FS=0.000;HaplotypeScore=5.8901;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.38;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3486,346,0 chrVIII 83943 . T G 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=3.174;HaplotypeScore=5.9995;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=1.091;QD=23.65;ReadPosRankSum=1.706;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3249,334,0 chrVIII 84104 . G A 4945.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.23;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4945,505,0 chrVIII 84194 . C A 4047.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.83;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4047,424,0 chrVIII 84302 . T C 4200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=192;Dels=0.00;FS=4.485;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.916;QD=21.88;ReadPosRankSum=1.660;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4200,433,0 chrVIII 84445 . G A 3444.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=25.32;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3444,346,0 chrVIII 84491 . A G 2576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.121;QD=23.00;ReadPosRankSum=2.384;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2609,273,0 chrVIII 84663 . C G 1415 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=22.46;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1448,153,0 chrVIII 84686 . A G 984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;MQRankSum=-1.654;QD=21.87;ReadPosRankSum=1.654;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:1,43:45:99:1017,108,0 chrVIII 84687 . T C 1007 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;QD=22.89;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:1040,108,0 chrVIII 84699 . A G 690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=43;Dels=0.00;FS=2.717;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;MQRankSum=-1.644;QD=16.05;ReadPosRankSum=2.336;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:2,41:43:78:723,78,0 chrVIII 84708 . G A 544 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=14.70;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:63:577,63,0 chrVIII 84777 . A C 2411 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.7215;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=26.49;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2444,255,0 chrVIII 84820 . A G 1904 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.80;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1937,198,0 chrVIII 84829 . T C 1587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.082;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-0.384;QD=20.88;ReadPosRankSum=3.129;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:4,72:76:99:1620,171,0 chrVIII 84887 . T C 2194 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=24.11;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2227,234,0 chrVIII 84910 . T C 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.748;QD=25.35;ReadPosRankSum=1.696;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2441,249,0 chrVIII 84920 . C T 2394 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.80;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2427,255,0 chrVIII 84969 . C T 3097 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.11;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3130,313,0 chrVIII 85001 . T C 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=175;Dels=0.00;FS=3.030;HaplotypeScore=12.0714;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.826;QD=22.84;ReadPosRankSum=2.407;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:3997,418,0 chrVIII 85109 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=24.75;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2731,285,0 chrVIII 85132 . C T 2438 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=23.90;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2471,249,0 chrVIII 85218 . C G 3154 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=25.03;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3187,330,0 chrVIII 85374 . A G 1010 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.09;MQ0=0;QD=21.96;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1043,108,0 chrVIII 85386 . T C 674 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.37;MQ0=0;QD=19.82;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:707,75,0 chrVIII 85389 . G T 604 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.58;MQ0=0;QD=19.48;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:63:637,63,0 chrVIII 92149 . T C 336 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.01;MQ0=0;QD=7.64;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:36:369,36,0 chrVIII 92232 . C T 1389 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=22.77;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1422,144,0 chrVIII 92259 . T C 1082 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;QD=23.02;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1115,114,0 chrVIII 92289 . G A 678 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.09;MQ0=0;QD=19.94;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:711,81,0 chrVIII 92299 . G A 591 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=18.47;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:75:624,75,0 chrVIII 92312 . A G 455 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;QD=14.68;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:60:488,60,0 chrVIII 92313 . A G 461 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;QD=14.87;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:60:494,60,0 chrVIII 92343 . C A 801 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;QD=20.02;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:834,96,0 chrVIII 92432 . C A 1082 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=24.59;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1115,114,0 chrVIII 92455 . C T 1015 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=23.07;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1048,108,0 chrVIII 92474 . C G 835 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=21.97;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:93:868,93,0 chrVIII 92608 . G A 1470 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=20.70;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1503,153,0 chrVIII 92658 . A G 2169 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=11.2482;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.36;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2202,231,0 chrVIII 92677 . T A 1915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=-1.646;QD=19.54;ReadPosRankSum=2.400;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1948,195,0 chrVIII 92692 . T G 1461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;MQRankSum=-0.223;QD=17.60;ReadPosRankSum=2.391;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1494,153,0 chrVIII 92694 . G A 1358 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=17.19;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1391,141,0 chrVIII 92759 . A C 4449.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.1161;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=23.79;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4449,472,0 chrVIII 92914 . C A 3787.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=23.82;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3787,387,0 chrVIII 92927 . G T 3833.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.0404;MLEAC=2;MLEAF=1.00;MQ=41.37;MQ0=0;QD=22.82;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3833,396,0 chrVIII 92971 . T C 3904.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.3166;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=0;QD=22.18;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:3904,408,0 chrVIII 92978 . C G 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=39.60;MQ0=0;MQRankSum=-0.806;QD=20.10;ReadPosRankSum=-1.531;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3478,375,0 chrVIII 93014 . G C 2636 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;QD=18.83;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2669,294,0 chrVIII 93026 . T C 2449 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;QD=18.69;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2482,261,0 chrVIII 93033 . C T 2137 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.25;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2170,213,0 chrVIII 93035 . G A 2005 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.06;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2038,210,0 chrVIII 93055 . A G 1403 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0738;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.503;QD=12.20;ReadPosRankSum=2.407;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:1436,153,0 chrVIII 93056 . A G 1359 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.03;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1392,150,0 chrVIII 93062 . A G 1340 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.75;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:1373,144,0 chrVIII 93068 . A G 1388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.793;QD=12.97;ReadPosRankSum=1.700;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1421,147,0 chrVIII 93086 . C T 1162 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.28;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1195,132,0 chrVIII 93088 . T C 1161 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.27;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1194,132,0 chrVIII 93095 . A G 1200 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=11.32;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1233,129,0 chrVIII 93101 . T C 1187 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=10.89;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1220,126,0 chrVIII 93125 . C T 881 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=12.24;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:914,99,0 chrVIII 93128 . G C 890 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=0;QD=12.54;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:96:923,96,0 chrVIII 93136 . C T 555 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.78;MQ0=0;QD=11.33;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:66:588,66,0 chrVIII 93137 . C T 491 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.78;MQ0=0;QD=10.02;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:63:524,63,0 chrVIII 93140 . C T 422 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.78;MQ0=0;QD=8.61;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:60:455,60,0 chrVIII 93143 . T C 422 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.78;MQ0=0;QD=8.61;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:60:455,60,0 chrVIII 93146 . T C 484 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.78;MQ0=0;QD=9.88;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:63:517,63,0 chrVIII 93151 . T C 534 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=12.14;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:60:567,60,0 chrVIII 93153 . T C 511 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=11.61;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:60:544,60,0 chrVIII 93158 . G A 271 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.13;MQ0=0;QD=9.34;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:33:304,33,0 chrVIII 93159 . T A 274 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.13;MQ0=0;QD=9.45;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:33:307,33,0 chrVIII 93161 . C T 270 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.13;MQ0=0;QD=9.31;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:33:303,33,0 chrVIII 93163 . C T 266 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=8.87;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,30:30:33:299,33,0 chrVIII 93164 . G C 253 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.09;MQ0=0;QD=8.16;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,30:31:33:286,33,0 chrVIII 93251 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=25.56;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1592,165,0 chrVIII 93257 . C T 1473 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=24.97;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1506,159,0 chrVIII 93284 . A G 451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=24;Dels=0.00;FS=11.187;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;MQRankSum=0.157;QD=18.79;ReadPosRankSum=2.037;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:2,22:24:54:484,54,0 chrVIII 93290 . C T 278 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=17.37;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:36:311,36,0 chrVIII 93391 . T C 162.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.51;SB=-7.279e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:21:195,21,0 chrVIII 93392 . C G 162.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.51;SB=-7.279e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:21:195,21,0 chrVIII 93395 . A G 173.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=9.61;SB=-7.494e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:21:206,21,0 chrVIII 93398 . G A 213.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=10.65;SB=-4.095e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:24:246,24,0 chrVIII 93401 . A G 204.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=9.27;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:24:237,24,0 chrVIII 93405 . T C 228.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=9.12;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:27:261,27,0 chrVIII 93407 . A G 224.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=8.96;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:27:257,27,0 chrVIII 93417 . T G 294 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;QD=9.48;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,31:31:33:327,33,0 chrVIII 93422 . G A 295 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=9.22;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:33:328,33,0 chrVIII 93425 . T C 299 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=8.79;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:36:332,36,0 chrVIII 93446 . T A 485 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=10.78;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:54:518,54,0 chrVIII 93450 . A G 479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=0;MQRankSum=1.713;QD=10.19;ReadPosRankSum=2.345;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:2,45:47:54:512,54,0 chrVIII 93466 . T C 567 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=0;QD=10.31;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:66:600,66,0 chrVIII 93467 . A G 576 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=0;QD=10.47;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:66:609,66,0 chrVIII 93482 . G A 430 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=0;QD=7.82;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:51:463,51,0 chrVIII 93486 . C A 431 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=0;QD=8.29;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:51:464,51,0 chrVIII 93500 . A G 404 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=7.77;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:48:437,48,0 chrVIII 93506 . G C 419 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=7.48;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:48:452,48,0 chrVIII 93509 . G A 459 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=8.20;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:51:492,51,0 chrVIII 93512 . G C 419 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=0;QD=7.22;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:48:452,48,0 chrVIII 93518 . G A 430 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=6.14;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:48:463,48,0 chrVIII 93525 . T C 525 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;MQRankSum=1.661;QD=7.00;ReadPosRankSum=2.384;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:60:558,60,0 chrVIII 93533 . A T 643 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=9.890;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;MQRankSum=1.244;QD=8.24;ReadPosRankSum=1.688;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:75:676,75,0 chrVIII 93534 . T A 553 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;MQRankSum=-0.044;QD=7.09;ReadPosRankSum=1.688;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:69:586,69,0 chrVIII 93546 . A G 846 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=13.274;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;MQRankSum=-1.406;QD=9.95;ReadPosRankSum=1.691;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:1,84:85:93:879,93,0 chrVIII 93547 . T C 842 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;MQRankSum=-0.224;QD=9.91;ReadPosRankSum=1.691;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:1,84:85:93:875,93,0 chrVIII 93555 . A G 748 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=9.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:93:781,93,0 chrVIII 93557 . G A 763 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=9.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:93:796,93,0 chrVIII 93558 . C T 812 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=9.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:93:845,93,0 chrVIII 93563 . T C 900 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=9.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,95:95:93:933,93,0 chrVIII 93566 . A T 875 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=9.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:93:908,93,0 chrVIII 93569 . A C 777 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=8.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:90:810,90,0 chrVIII 93571 . G A 785 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=8.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:90:818,90,0 chrVIII 93574 . T C 822 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=9.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:90:855,90,0 chrVIII 93578 . A G 787 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:90:820,90,0 chrVIII 93580 . G C 768 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:87:801,87,0 chrVIII 93581 . A G 746 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:87:779,87,0 chrVIII 93585 . T C 851 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,96:96:90:884,90,0 chrVIII 93602 . A G 733 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.916;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.259;QD=7.56;ReadPosRankSum=5.776;SB=3.00 GT:AD:DP:GQ:PL 1/1:13,84:97:81:766,81,0 chrVIII 93655 . G A 501 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=17.89;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:54:534,54,0 chrVIII 93659 . T A 584 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.175;DP=36;Dels=0.00;FS=16.232;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;MQRankSum=-1.001;QD=16.22;ReadPosRankSum=2.175;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:2,34:36:63:617,63,0 chrVIII 93665 . C T 830 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=21.28;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:863,87,0 chrVIII 93752 . A G 5218.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=0;QD=24.61;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5218,547,0 chrVIII 93770 . A T 4196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;MQRankSum=0.409;QD=23.57;ReadPosRankSum=1.713;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4196,438,0 chrVIII 93824 . T A 143.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.01;SB=-9.363e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:176,18,0 chrVIII 93839 . G A 28.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:60,6,0 chrVIII 93842 . A G 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.26;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:59,6,0 chrVIII 93848 . T G 59.97 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.99;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:92,9,0 chrVIII 93857 . A G 142.13 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.21;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:175,18,0 chrVIII 93872 . T C 126.13 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.42;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:18:159,18,0 chrVIII 93873 . C G 127.13 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.48;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:18:160,18,0 chrVIII 93875 . G A 168.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.88;SB=-4.089e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:24:201,24,0 chrVIII 93878 . T G 294 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.25;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:36:327,36,0 chrVIII 93884 . T C 521 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.89;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:60:554,60,0 chrVIII 93896 . A G 604 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.10;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:69:637,69,0 chrVIII 93928 . G T 900 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=12.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:933,102,0 chrVIII 93929 . A G 894 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=12.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:927,102,0 chrVIII 93932 . A G 962 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=12.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:995,102,0 chrVIII 93935 . C T 1030 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=12.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1063,105,0 chrVIII 93938 . C A 1010 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=12.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1043,105,0 chrVIII 93950 . T C 863 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=11.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:93:896,93,0 chrVIII 93961 . A G 890 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;MQRankSum=-1.686;QD=11.87;ReadPosRankSum=1.686;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,74:75:96:923,96,0 chrVIII 93962 . C T 924 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=12.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:96:957,96,0 chrVIII 93968 . A G 868 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;MQRankSum=-0.096;QD=12.06;ReadPosRankSum=1.684;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,71:72:96:901,96,0 chrVIII 93971 . T G 728 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=10.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:84:761,84,0 chrVIII 93974 . G A 692 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=11.53;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:75:725,75,0 chrVIII 93977 . T C 635 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=10.58;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:72:668,72,0 chrVIII 93980 . A G 593 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=10.05;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:66:626,66,0 chrVIII 93983 . A G 581 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=1.361;QD=10.37;ReadPosRankSum=1.670;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:1,55:56:66:614,66,0 chrVIII 93995 . G A 525 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;MQRankSum=1.171;QD=14.19;ReadPosRankSum=0.515;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:1,36:37:60:558,60,0 chrVIII 93997 . A C 566 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;MQRankSum=1.171;QD=15.30;ReadPosRankSum=1.639;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:1,36:37:63:599,63,0 chrVIII 94007 . T C 322 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=11.10;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:39:355,39,0 chrVIII 94010 . T C 271 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=10.42;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:33:304,33,0 chrVIII 94012 . A G 228.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.876;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;MQRankSum=1.395;QD=8.77;ReadPosRankSum=2.261;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:2,24:26:27:261,27,0 chrVIII 94022 . G T 184.03 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=13.15;SB=-3.987e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:24:217,24,0 chrVIII 94024 . C T 166.06 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=11.86;SB=-7.388e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:21:199,21,0 chrVIII 94034 . T G 82.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.25;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:115,12,0 chrVIII 94038 . A G 80.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.747;QD=10.06;ReadPosRankSum=0.747;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:1,7:8:12:113,12,0 chrVIII 94040 . T C 71.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.22;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:104,12,0 chrVIII 94976 . T C 58.51 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.02;MQ0=0;QD=0.81;SB=-1.175e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:12:91,12,0 chrVIII 94977 . C T 58.51 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.77;MQ0=0;QD=0.78;SB=-1.815e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:12:91,12,0 chrVIII 94981 . A G 218.01 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=2.56;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:27:251,27,0 chrVIII 95092 . A G 4559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=199;Dels=0.00;FS=19.173;HaplotypeScore=6.4427;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=2.015;QD=22.91;ReadPosRankSum=2.964;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:3,194:199:99:4559,478,0 chrVIII 95107 . G A 4520.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.7430;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=21.42;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4520,480,0 chrVIII 95292 . G A 5199.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.31;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:5199,520,0 chrVIII 95322 . C T 5304.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.50;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5304,526,0 chrVIII 95481 . C A 3867.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=18.6742;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.35;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3867,385,0 chrVIII 95661 . A T 4497.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.4554;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.44;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4497,448,0 chrVIII 95871 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.8960;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.78;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4010,403,0 chrVIII 96126 . A G 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.172;DP=184;Dels=0.00;FS=9.174;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.348;QD=21.99;ReadPosRankSum=3.373;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:4,178:184:99:4047,423,0 chrVIII 96393 . C T 5713.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.5449;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=25.17;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5713,586,0 chrVIII 96485 . C T 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=167;Dels=0.00;FS=3.770;HaplotypeScore=17.4400;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.497;QD=21.47;ReadPosRankSum=0.556;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,161:167:99:3585,372,0 chrVIII 96654 . T A 4687.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.80;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4687,469,0 chrVIII 96707 . T C 3745.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3745,391,0 chrVIII 96942 . G C 3950.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.9781;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.83;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3950,429,0 chrVIII 97362 . C T 4264.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.80;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4264,430,0 chrVIII 97536 . T C 4257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.210;DP=185;Dels=0.00;FS=8.321;HaplotypeScore=17.1321;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=0.437;QD=23.01;ReadPosRankSum=3.325;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:4,178:185:99:4257,474,0 chrVIII 97599 . A G 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=3.186;HaplotypeScore=3.5141;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=0.812;QD=22.94;ReadPosRankSum=1.693;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4060,418,0 chrVIII 97611 . G T 4387.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.1650;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=21.72;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4387,445,0 chrVIII 97650 . T C 5145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.441;DP=226;Dels=0.00;FS=3.167;HaplotypeScore=20.4536;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=1.211;QD=22.77;ReadPosRankSum=0.123;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:5145,504,0 chrVIII 97798 . G A 7006.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=18.6699;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=25.29;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:7006,697,0 chrVIII 97838 . C T 7279.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.33;SB=-3.713e+03 GT:AD:DP:GQ:PL 1/1:0,325:326:99:7279,739,0 chrVIII 97856 . C T 6338.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.51;SB=-3.894e+03 GT:AD:DP:GQ:PL 1/1:0,308:309:99:6338,640,0 chrVIII 97875 . G A 6507.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=10.5233;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.60;SB=-4.476e+03 GT:AD:DP:GQ:PL 1/1:0,326:332:99:6507,679,0 chrVIII 98284 . G A 1880 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=22.9100;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=15.16;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,119:124:99:1913,192,0 chrVIII 98376 . C T 5665.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.9323;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=26.98;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5665,568,0 chrVIII 98484 . A T 4368.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.4575;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.25;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4368,439,0 chrVIII 98525 . C T 5615.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.46;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5615,601,0 chrVIII 98622 . C G 4879.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.83;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,242:246:99:4879,528,0 chrVIII 98643 . C A 3189 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.4608;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=17.52;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3222,333,0 chrVIII 98978 . C T 5349.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.76;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:5349,526,0 chrVIII 99089 . G A 4445.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.8933;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=24.03;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4445,445,0 chrVIII 99112 . A G 4849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=217;Dels=0.00;FS=5.857;HaplotypeScore=7.4930;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-2.038;QD=22.35;ReadPosRankSum=2.910;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:3,209:217:99:4849,505,0 chrVIII 100031 . G C 3712.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.1392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3712,384,0 chrVIII 100079 . A G 3942.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.19;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3942,420,0 chrVIII 100241 . A G 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.128;QD=21.06;ReadPosRankSum=1.623;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2034,216,0 chrVIII 101020 . G A 3940.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.2716;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.30;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3940,400,0 chrVIII 101246 . A T 4504.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.2824;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.22;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4504,454,0 chrVIII 101494 . G A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3674,387,0 chrVIII 101857 . G A 5053.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5053,508,0 chrVIII 102030 . A G 4662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=195;Dels=0.00;FS=5.907;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.943;QD=23.91;ReadPosRankSum=2.840;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:3,192:195:99:4662,481,0 chrVIII 102271 . G C 3874.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3874,411,0 chrVIII 102818 . G C 4078.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.6923;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.99;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:4078,433,0 chrVIII 103046 . A G 5095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=3.854;HaplotypeScore=6.6296;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.664;QD=24.98;ReadPosRankSum=1.715;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:5095,541,0 chrVIII 103070 . T C 5208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.261;QD=24.34;ReadPosRankSum=1.683;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:5208,538,0 chrVIII 103106 . G A 6164.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.37;SB=-3.189e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:6164,622,0 chrVIII 103247 . A T 4465.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.90;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4465,463,0 chrVIII 104040 . C T 2915 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2948,297,0 chrVIII 104091 . A C 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=3.047;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.470;QD=22.78;ReadPosRankSum=1.674;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2767,294,0 chrVIII 104146 . C T 3188 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.27;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3221,336,0 chrVIII 104423 . C A 1842 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.122;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.6681;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=1.115;QD=14.17;ReadPosRankSum=3.678;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:6,124:130:99:1875,222,0 chrVIII 104426 . A C 1881 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.345;DP=128;Dels=0.02;FS=9.135;HaplotypeScore=7.0437;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-0.629;QD=14.70;ReadPosRankSum=3.387;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:4,120:125:99:1914,225,0 chrVIII 104429 . G A 2511 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=20.25;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2544,255,0 chrVIII 104540 . A T 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6838;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.328;QD=22.86;ReadPosRankSum=2.399;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3337,337,0 chrVIII 104953 . G A 1753 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=26.16;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1786,177,0 chrVIII 105227 . C A 2424 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=26.35;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2457,249,0 chrVIII 105292 . T A 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.253;QD=22.96;ReadPosRankSum=1.690;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1916,204,0 chrVIII 105298 . T A 1892 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.2243;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.65;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1925,189,0 chrVIII 105424 . G T 1705 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=22.14;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1738,171,0 chrVIII 105464 . G A 1659 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=21.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1692,177,0 chrVIII 105469 . G A 1652 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1685,174,0 chrVIII 105532 . C T 1044 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=19.33;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1077,114,0 chrVIII 105589 . C T 425 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;QD=19.32;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,21:22:45:458,45,0 chrVIII 105612 . A T 238.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;MQRankSum=-1.736;QD=17.00;ReadPosRankSum=1.488;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:1,13:14:27:271,27,0 chrVIII 105615 . T A 177.03 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.62;SB=-5.203e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:24:210,24,0 chrVIII 105621 . C T 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.56;SB=-5.680e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:54,6,0 chrVIII 105685 . G T 354 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=7.0033;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=11.80;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:42:387,42,0 chrVIII 106261 . T A 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=143;Dels=0.00;FS=6.004;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.683;QD=24.89;ReadPosRankSum=2.909;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:3559,372,0 chrVIII 106500 . T A 4588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.2136;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.513;QD=24.15;ReadPosRankSum=1.659;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4588,475,0 chrVIII 106528 . T C 5156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=216;Dels=0.00;FS=2.947;HaplotypeScore=9.2625;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.460;QD=23.87;ReadPosRankSum=2.381;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:5156,523,0 chrVIII 106850 . A C 5852.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.78;SB=-3.077e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5852,607,0 chrVIII 106893 . A G 5654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=15.8480;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.129;QD=24.48;ReadPosRankSum=1.717;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:1,228:231:99:5654,583,0 chrVIII 107122 . C T 3762.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3762,391,0 chrVIII 107993 . T A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=26.11;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3629,367,0 chrVIII 108133 . T C 2187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2283;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.124;QD=20.06;ReadPosRankSum=0.485;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2220,249,0 chrVIII 108134 . C T 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0604;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-0.078;QD=19.86;ReadPosRankSum=0.454;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2237,249,0 chrVIII 108351 . C T 1812 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=27.04;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1845,192,0 chrVIII 108387 . G A 1636 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.17;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1669,168,0 chrVIII 108431 . G A 902 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.55;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:935,96,0 chrVIII 108568 . G A 1277 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.60;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1310,141,0 chrVIII 109025 . A G 4440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=182;Dels=0.00;FS=13.145;HaplotypeScore=7.8838;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.696;QD=24.40;ReadPosRankSum=2.939;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:4440,477,0 chrVIII 110021 . C T 2219 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.80;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2252,225,0 chrVIII 110970 . G A 4216.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.4328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.02;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4216,427,0 chrVIII 111695 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=25.45;SB=-3.501e+01 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3189,351,0 chrVIII 112492 . A T 4638.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.6610;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.48;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4638,475,0 chrVIII 112829 . A T 4694.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.7383;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.24;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4694,469,0 chrVIII 112966 . G A 3034 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.52;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3067,310,0 chrVIII 113383 . A G 3045 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3078,327,0 chrVIII 113512 . A C 3432.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.05;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3432,357,0 chrVIII 113931 . C T 4707.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.65;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4707,481,0 chrVIII 114144 . A G 6367.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=16.4908;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.67;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:6367,652,0 chrVIII 114337 . G A 5766.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-3.020e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5766,580,0 chrVIII 114567 . G A 5027.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.5278;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.52;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:5027,526,0 chrVIII 114744 . T A 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.514;DP=177;Dels=0.00;FS=5.855;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.994;QD=21.33;ReadPosRankSum=2.937;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:3,173:177:99:3775,396,0 chrVIII 114771 . G A 4615.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.5356;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.55;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4615,469,0 chrVIII 115977 . A T 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=3.802;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.155;QD=26.04;ReadPosRankSum=1.691;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4374,445,0 chrVIII 116310 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=25.89;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3218,325,0 chrVIII 116378 . C A 3036 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.7832;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.69;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3069,321,0 chrVIII 117504 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=139.7720;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=20.68;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3011,318,0 chrVIII 117534 . A T 2275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=136;Dels=0.01;FS=3.242;HaplotypeScore=18.5739;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;MQRankSum=-1.245;QD=16.73;ReadPosRankSum=1.681;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2308,240,0 chrVIII 117556 . C T 1753 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;QD=14.86;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1786,189,0 chrVIII 117572 . C T 1978 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=9.1000;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=0;QD=14.76;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2011,201,0 chrVIII 117586 . A G 1998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;MQRankSum=-1.364;QD=14.17;ReadPosRankSum=1.683;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2031,213,0 chrVIII 117605 . G C 1902 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=13.21;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:1935,201,0 chrVIII 117608 . A G 1876 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=13.21;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1909,198,0 chrVIII 118068 . A G 4192.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.61;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4192,445,0 chrVIII 118187 . T C 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.1861;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.199;QD=22.15;ReadPosRankSum=1.633;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3877,414,0 chrVIII 119428 . A C 1658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.651;QD=19.51;ReadPosRankSum=1.691;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1691,177,0 chrVIII 121315 . T C 5719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=236;Dels=0.00;FS=2.943;HaplotypeScore=19.8859;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.141;QD=24.23;ReadPosRankSum=2.366;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:2,233:236:99:5719,592,0 chrVIII 121745 . A T 955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.821;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=-0.697;QD=17.36;ReadPosRankSum=2.271;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:2,53:55:99:988,105,0 chrVIII 122014 . T C 2685 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=26.32;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2718,276,0 chrVIII 122053 . C T 2640 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=15.6826;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.36;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2673,270,0 chrVIII 124092 . T A 1757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.050;QD=26.22;ReadPosRankSum=1.680;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1790,189,0 chrVIII 124640 . C G 4603.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.3487;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.61;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4603,478,0 chrVIII 124744 . G A 7340.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=12.1664;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.30;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:0,298:302:99:7340,730,0 chrVIII 125040 . A G 5418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=15.3735;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.322;QD=23.25;ReadPosRankSum=1.642;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:5418,568,0 chrVIII 125771 . C T 2971 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3358;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.17;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3004,304,0 chrVIII 125937 . T C 4608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.271;QD=26.64;ReadPosRankSum=2.350;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4608,469,0 chrVIII 126376 . T A 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.675;QD=22.04;ReadPosRankSum=2.754;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2832,294,0 chrVIII 126572 . T C 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.067;QD=26.72;ReadPosRankSum=1.697;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2678,276,0 chrVIII 126792 . C T 3018 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.02;FS=0.000;HaplotypeScore=44.3750;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.22;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3051,309,0 chrVIII 126873 . C T 2629 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=25.04;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2662,276,0 chrVIII 126953 . C T 2169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=88;Dels=0.00;FS=3.058;HaplotypeScore=13.2473;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.378;QD=24.65;ReadPosRankSum=0.938;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:2,86:88:99:2202,231,0 chrVIII 127010 . A T 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.330;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=1.514;QD=26.33;ReadPosRankSum=1.705;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3344,334,0 chrVIII 127040 . A T 3735.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.41;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3735,373,0 chrVIII 127225 . A G 5028.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.01;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:5028,517,0 chrVIII 127727 . C G 1776 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=25.74;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1809,186,0 chrVIII 127758 . C T 1517 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=22.31;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1550,159,0 chrVIII 127766 . G C 1393 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=20.19;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1426,150,0 chrVIII 127853 . A G 3078 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=25.23;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3111,318,0 chrVIII 127914 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.63;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2568,261,0 chrVIII 128112 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=20.66;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3049,307,0 chrVIII 128119 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.69;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2950,300,0 chrVIII 128376 . A C 6662.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=15.8560;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.62;SB=-3.583e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:6662,694,0 chrVIII 128736 . G A 4502.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=19.2843;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4502,454,0 chrVIII 129223 . A T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.01;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3808,394,0 chrVIII 129228 . C T 3783.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.65;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3783,391,0 chrVIII 129445 . A G 4751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=196;Dels=0.00;FS=2.978;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-1.823;QD=24.24;ReadPosRankSum=2.362;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4751,493,0 chrVIII 130043 . C T 4481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.161;DP=188;Dels=0.00;FS=4.229;HaplotypeScore=12.2431;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.714;QD=23.84;ReadPosRankSum=0.700;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4481,460,0 chrVIII 130198 . A C 5183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=229;Dels=0.00;FS=3.030;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.538;QD=22.63;ReadPosRankSum=2.395;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:2,224:229:99:5183,553,0 chrVIII 130265 . C T 5179.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=16.0238;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.76;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5179,544,0 chrVIII 130533 . G A 2866 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=22.39;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2899,300,0 chrVIII 130538 . T C 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.375;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=0.670;QD=21.23;ReadPosRankSum=1.648;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2666,279,0 chrVIII 130619 . C T 3004 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.62;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3037,318,0 chrVIII 130652 . A G 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.522;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.860;QD=26.27;ReadPosRankSum=1.655;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3546,364,0 chrVIII 130783 . T C 5767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=225;Dels=0.00;FS=2.495;HaplotypeScore=11.3278;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.728;QD=25.63;ReadPosRankSum=2.960;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:3,222:225:99:5767,601,0 chrVIII 131216 . C T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.75;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3589,358,0 chrVIII 131324 . T C 4266.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.5460;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.61;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4266,451,0 chrVIII 131505 . T A 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=10.6542;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.034;QD=23.51;ReadPosRankSum=1.571;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3573,372,0 chrVIII 131549 . G T 2986 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=109.3200;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.97;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3019,304,0 chrVIII 131693 . G T 2162 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=20.02;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2195,219,0 chrVIII 131716 . T C 2273 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=18.63;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2306,234,0 chrVIII 131723 . C A 2463 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=19.55;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2496,255,0 chrVIII 131900 . T A 3121 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.2984;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=24.77;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3154,321,0 chrVIII 132095 . C A 2732 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9907;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.39;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2765,279,0 chrVIII 132165 . T C 2617 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.79;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2650,273,0 chrVIII 132728 . A C 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=3.010;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.487;QD=22.85;ReadPosRankSum=1.705;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2958,309,0 chrVIII 132840 . A G 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.086;DP=110;Dels=0.00;FS=2.427;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.492;QD=21.94;ReadPosRankSum=3.376;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:4,105:110:99:2446,233,0 chrVIII 132907 . G A 2221 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=23.88;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2254,228,0 chrVIII 132911 . T C 2083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=7.140;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;MQRankSum=1.260;QD=23.14;ReadPosRankSum=1.693;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:1,87:90:99:2116,213,0 chrVIII 132947 . G A 1502 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;QD=22.76;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1535,153,0 chrVIII 132971 . G A 1137 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;QD=21.45;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1170,120,0 chrVIII 132987 . G A 893 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=0;QD=21.78;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:96:926,96,0 chrVIII 133001 . C T 866 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=21.2632;MLEAC=2;MLEAF=1.00;MQ=40.84;MQ0=0;QD=24.06;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:90:899,90,0 chrVIII 133123 . C G,T 344.01 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1,1;MLEAF=0.500,0.500;MQ=32.89;MQ0=0;QD=8.82;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/2:0,21,17:39:86:404,285,270,119,0,86 chrVIII 133140 . G A 397 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=11.34;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:45:430,45,0 chrVIII 133235 . T C 1708 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;QD=23.72;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1741,183,0 chrVIII 133437 . A T 2212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=92;Dels=0.00;FS=8.992;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.710;QD=24.04;ReadPosRankSum=2.396;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:2245,234,0 chrVIII 133469 . T C 2300 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=23.71;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2333,240,0 chrVIII 133485 . C A 1987 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=21.84;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2020,213,0 chrVIII 133487 . C G 1938 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=21.78;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1971,210,0 chrVIII 133760 . A C 2084 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;QD=17.22;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2117,243,0 chrVIII 133952 . A T 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=120;Dels=0.00;FS=3.729;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.13;MQ0=1;MQRankSum=-1.615;QD=20.47;ReadPosRankSum=1.673;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2489,261,0 chrVIII 133963 . T C 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=122;Dels=0.00;FS=2.979;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=38.47;MQ0=1;MQRankSum=-1.230;QD=19.44;ReadPosRankSum=2.389;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2405,249,0 chrVIII 133967 . A C 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=3.632;HaplotypeScore=5.7998;MLEAC=2;MLEAF=1.00;MQ=38.69;MQ0=1;MQRankSum=-1.155;QD=18.88;ReadPosRankSum=1.703;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2336,246,0 chrVIII 134097 . A G 3895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=160;Dels=0.00;FS=3.791;HaplotypeScore=10.2825;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.153;QD=24.34;ReadPosRankSum=1.710;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3895,417,0 chrVIII 134157 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=23.22;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3576,378,0 chrVIII 134172 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=22.70;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:3256,336,0 chrVIII 134180 . G A 2890 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=21.73;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2923,303,0 chrVIII 134208 . G A 2097 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;QD=15.89;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2130,225,0 chrVIII 134240 . A T 2431 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=18.70;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2464,246,0 chrVIII 134264 . T G 241.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.251;DP=142;Dels=0.00;FS=1.205;HaplotypeScore=363.7388;MLEAC=1;MLEAF=0.500;MQ=50.04;MQ0=0;MQRankSum=0.473;QD=1.70;ReadPosRankSum=3.938;SB=-1.583e+03 GT:AD:DP:GQ:PL 0/1:11,131:142:99:271,0,125 chrVIII 134427 . G A 2735 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=23.38;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2768,282,0 chrVIII 134509 . T C 3999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.647;QD=23.95;ReadPosRankSum=1.711;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3999,412,0 chrVIII 134524 . G A 3869.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=23.17;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3869,388,0 chrVIII 134907 . G T 2927 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2960,306,0 chrVIII 135000 . A G 2429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.166;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.8605;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.699;QD=23.36;ReadPosRankSum=1.632;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2462,252,0 chrVIII 135273 . G A 1756 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.73;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1789,177,0 chrVIII 135388 . A G 2883 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.63;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2916,300,0 chrVIII 136628 . T G 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=4.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.289;QD=23.99;ReadPosRankSum=1.604;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2624,273,0 chrVIII 136744 . G A 2100 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.4875;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.42;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2133,216,0 chrVIII 136896 . G A 1924 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.91;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1957,198,0 chrVIII 136914 . T G 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-0.633;QD=20.72;ReadPosRankSum=1.699;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2188,228,0 chrVIII 137022 . T C 3545.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.16;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3545,367,0 chrVIII 137028 . A G 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=170;Dels=0.00;FS=6.571;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-0.742;QD=20.30;ReadPosRankSum=1.526;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3451,366,0 chrVIII 137643 . C T 6792.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=16.8270;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.10;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:0,294:294:99:6792,682,0 chrVIII 137688 . A G 5748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=265;Dels=0.00;FS=2.762;HaplotypeScore=19.5035;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.990;QD=21.69;ReadPosRankSum=2.384;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:2,262:265:99:5748,601,0 chrVIII 137850 . G A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.74;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3484,363,0 chrVIII 137880 . T C 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.530;QD=21.40;ReadPosRankSum=2.329;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3510,361,0 chrVIII 137997 . G A 3873.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.8329;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.39;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3873,400,0 chrVIII 138316 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.63;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3888,385,0 chrVIII 138375 . G A 3966.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3966,397,0 chrVIII 138502 . T G 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.780;HaplotypeScore=15.5428;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.714;QD=23.55;ReadPosRankSum=1.710;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3791,402,0 chrVIII 138587 . T C 4366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.8535;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;MQRankSum=-0.563;QD=25.99;ReadPosRankSum=1.711;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:4366,445,0 chrVIII 138689 . T G 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=146;Dels=0.00;FS=2.979;HaplotypeScore=8.5427;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.040;QD=25.15;ReadPosRankSum=2.415;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:2,141:146:99:3672,379,0 chrVIII 138717 . T C 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=153;Dels=0.00;FS=3.039;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.906;QD=23.42;ReadPosRankSum=1.503;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3584,378,0 chrVIII 139068 . A G 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=172;Dels=0.00;FS=3.014;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.478;QD=23.31;ReadPosRankSum=2.335;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:4010,415,0 chrVIII 143451 . T C 5635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=245;Dels=0.00;FS=5.959;HaplotypeScore=14.8431;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.439;QD=23.00;ReadPosRankSum=2.947;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:3,242:245:99:5635,577,0 chrVIII 144266 . T C 4170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=178;Dels=0.00;FS=8.869;HaplotypeScore=12.4960;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.826;QD=23.43;ReadPosRankSum=2.407;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:2,172:178:99:4170,433,0 chrVIII 144393 . A G 5499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=214;Dels=0.00;FS=6.808;HaplotypeScore=14.3728;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.384;QD=25.70;ReadPosRankSum=2.404;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:5499,568,0 chrVIII 144688 . T C 8322.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=17.1706;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.26;SB=-4.248e+03 GT:AD:DP:GQ:PL 1/1:0,341:343:99:8322,847,0 chrVIII 145315 . G C 4254.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.7750;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4254,448,0 chrVIII 146029 . T A 4027.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.8563;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4027,409,0 chrVIII 146380 . C A 2408.18 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;DP=155;Dels=0.00;FS=214.348;HaplotypeScore=2.5707;MLEAC=1;MLEAF=0.500;MQ=31.53;MQ0=3;MQRankSum=2.019;QD=15.54;ReadPosRankSum=-0.858;SB=-4.419e+01 GT:AD:DP:GQ:PL 0/1:22,133:155:11:2438,0,11 chrVIII 146382 . G A 2398.52 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.414;DP=154;Dels=0.00;FS=213.119;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=30.59;MQ0=4;MQRankSum=2.098;QD=15.57;ReadPosRankSum=-1.225;SB=-4.353e+01 GT:AD:DP:GQ:PL 0/1:23,131:154:6:2428,0,6 chrVIII 146822 . C A 1753 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.37;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1786,189,0 chrVIII 149077 . C T 815 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:848,87,0 chrVIII 149347 . C T 4013.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=27.11;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4013,403,0 chrVIII 149511 . A C 3485.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=20.14;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:3485,369,0 chrVIII 149519 . T C 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=172;Dels=0.00;FS=10.566;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.538;QD=20.87;ReadPosRankSum=2.948;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:3589,367,0 chrVIII 149564 . A C 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=178;Dels=0.00;FS=2.885;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=-0.187;QD=17.60;ReadPosRankSum=2.422;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3166,322,0 chrVIII 149577 . A G 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=177;Dels=0.00;FS=2.925;HaplotypeScore=7.1227;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;MQRankSum=-0.691;QD=17.96;ReadPosRankSum=2.394;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3212,336,0 chrVIII 149614 . T C 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.749;DP=164;Dels=0.00;FS=9.942;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=-1.129;QD=17.66;ReadPosRankSum=2.945;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:2930,300,0 chrVIII 149622 . A G 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=154;Dels=0.00;FS=6.163;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;MQRankSum=-0.471;QD=18.01;ReadPosRankSum=2.354;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:2806,294,0 chrVIII 149665 . G A 3422.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.66;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3422,343,0 chrVIII 149706 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=23.08;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3393,346,0 chrVIII 149795 . T A 4622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.0306;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.231;QD=25.68;ReadPosRankSum=1.694;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4622,460,0 chrVIII 149856 . G A 4305.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.9573;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=25.47;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4305,427,0 chrVIII 149906 . C T 3825.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=24.36;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3825,388,0 chrVIII 149951 . T C 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=167;Dels=0.00;FS=6.312;HaplotypeScore=7.4310;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.566;QD=21.85;ReadPosRankSum=2.420;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3649,384,0 chrVIII 149962 . A G 3955.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.1037;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=22.34;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3955,417,0 chrVIII 150051 . C T 2872 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.6539;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;QD=17.62;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:2905,303,0 chrVIII 150079 . G A 2411 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.102;DP=153;Dels=0.00;FS=3.522;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.44;MQ0=0;MQRankSum=-0.170;QD=15.76;ReadPosRankSum=-0.374;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2444,255,0 chrVIII 150081 . A G 2421 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=3.558;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.22;MQ0=0;MQRankSum=-1.345;QD=15.93;ReadPosRankSum=1.709;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2454,255,0 chrVIII 150083 . C T 2529 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.65;MQ0=0;QD=16.42;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2562,255,0 chrVIII 150086 . G A 2502 SnpCluster AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;QD=14.30;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2535,255,0 chrVIII 150136 . C G 3831.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=17.26;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:3831,402,0 chrVIII 150142 . A G 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=215;Dels=0.00;FS=4.273;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;MQRankSum=0.146;QD=17.08;ReadPosRankSum=1.716;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:3673,387,0 chrVIII 150182 . T C 3856.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=20.19;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3856,400,0 chrVIII 150232 . C T 2868 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=24.94;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2901,300,0 chrVIII 150248 . G T 2687 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=22.97;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2720,279,0 chrVIII 150338 . A G 4052.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=23.56;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4052,424,0 chrVIII 150392 . A T 1806 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2066;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=19.85;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1839,198,0 chrVIII 150421 . T C 1779 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=22.81;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1812,189,0 chrVIII 150444 . T C 1928 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=24.10;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1961,204,0 chrVIII 150470 . A G 1586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=-0.228;QD=20.87;ReadPosRankSum=1.641;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1619,168,0 chrVIII 150476 . C T 1614 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=21.52;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1647,165,0 chrVIII 150582 . G A 1145 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=16.59;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1178,117,0 chrVIII 150619 . C T 1409 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.9497;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=15.66;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1442,147,0 chrVIII 150639 . C T 1912 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8427;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=19.12;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1945,201,0 chrVIII 150723 . T C 2523 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=12.4185;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=25.23;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2556,270,0 chrVIII 150802 . T C 4601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.1878;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-1.282;QD=25.42;ReadPosRankSum=2.395;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4601,481,0 chrVIII 150919 . G T 4275.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.6655;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.75;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4275,445,0 chrVIII 151003 . A G 4778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-0.146;QD=23.54;ReadPosRankSum=1.715;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4778,499,0 chrVIII 151022 . T C 4812.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.81;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4812,511,0 chrVIII 151118 . C G 4105.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.82;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4105,421,0 chrVIII 151171 . T G 3571.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.80;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3571,367,0 chrVIII 151416 . T C 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.511;QD=21.83;ReadPosRankSum=1.695;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2085,222,0 chrVIII 151599 . T C 3977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.3602;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=1.276;QD=23.81;ReadPosRankSum=1.670;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3977,403,0 chrVIII 151640 . A G 3466.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.4657;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.94;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3466,360,0 chrVIII 151733 . T C 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=160;Dels=0.00;FS=8.905;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.423;QD=22.63;ReadPosRankSum=2.418;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3620,376,0 chrVIII 151824 . A G 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=166;Dels=0.00;FS=5.574;HaplotypeScore=14.1820;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-0.958;QD=21.14;ReadPosRankSum=2.934;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3509,369,0 chrVIII 152094 . A C 2998 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.57;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3031,315,0 chrVIII 152121 . G A 2525 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.95;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2558,273,0 chrVIII 152274 . C T 2766 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0556;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.48;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2799,283,0 chrVIII 152397 . C T 2721 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.96;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2754,277,0 chrVIII 152625 . T C 2655 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=26.03;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2688,276,0 chrVIII 152677 . C T 2457 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=26.71;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2490,246,0 chrVIII 152692 . A G 2329 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=23.77;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2362,240,0 chrVIII 152769 . T C 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;DP=140;Dels=0.00;FS=6.091;HaplotypeScore=10.2100;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.701;QD=24.59;ReadPosRankSum=2.949;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:3,135:140:99:3443,360,0 chrVIII 152802 . T C 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=3.379;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.860;QD=26.01;ReadPosRankSum=1.681;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3537,364,0 chrVIII 152925 . T C 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.086;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-0.329;QD=22.50;ReadPosRankSum=1.553;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2643,270,0 chrVIII 152944 . T C 2416 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=21.96;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2449,249,0 chrVIII 152946 . G A 2307 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.78;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2340,243,0 chrVIII 153195 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=25.44;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3536,361,0 chrVIII 153282 . G A 2597 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2630,285,0 chrVIII 153442 . G A 5273.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.8999;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.60;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5273,532,0 chrVIII 153651 . G A 4568.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.92;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4568,451,0 chrVIII 153731 . T C 5191.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=14.6818;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.57;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5191,550,0 chrVIII 153963 . A G 3198 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.01;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3231,342,0 chrVIII 154146 . T C 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;DP=109;Dels=0.00;FS=2.858;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.373;QD=22.05;ReadPosRankSum=2.405;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2436,255,0 chrVIII 154167 . C T 2634 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.74;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2667,276,0 chrVIII 154199 . A G 2472 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.77;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2505,258,0 chrVIII 154225 . T C 2143 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=17.42;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2176,225,0 chrVIII 154229 . C T 2214 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=18.15;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2247,231,0 chrVIII 154349 . T C 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=4.032;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-0.531;QD=25.58;ReadPosRankSum=1.704;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:3230,331,0 chrVIII 154554 . C T 2078 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=25.65;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2111,213,0 chrVIII 154571 . G A 2159 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.1330;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=24.26;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2192,219,0 chrVIII 154608 . A G 2220 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.89;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2253,234,0 chrVIII 154677 . T A 4154.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.63;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4154,424,0 chrVIII 154746 . G A 3741.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=26.72;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3741,376,0 chrVIII 155087 . C T 2662 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.8509;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=26.89;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2695,270,0 chrVIII 155157 . G A 2278 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=23.73;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2311,231,0 chrVIII 155175 . T C 1855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.732;QD=18.74;ReadPosRankSum=1.696;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,96:99:99:1888,195,0 chrVIII 155186 . A G 1943 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.03;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1976,201,0 chrVIII 155332 . G T 2754 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.16;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2787,288,0 chrVIII 155521 . T C 2875 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.22;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2908,300,0 chrVIII 155587 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.33;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3245,322,0 chrVIII 155635 . G A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.4832;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.22;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3758,373,0 chrVIII 155994 . G T 5536.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.24;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5536,571,0 chrVIII 156096 . A C 3728.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.53;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3728,388,0 chrVIII 156276 . C A 4176.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.8853;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.86;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4176,424,0 chrVIII 156307 . T C 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=3.348;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.591;QD=24.28;ReadPosRankSum=1.661;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3593,373,0 chrVIII 156420 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.1970;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=25.36;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3576,370,0 chrVIII 156477 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=147;Dels=0.00;FS=9.399;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-1.702;QD=25.14;ReadPosRankSum=2.910;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:3,142:147:99:3695,387,0 chrVIII 156690 . A C 3817.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=25.28;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3817,394,0 chrVIII 156698 . T G 3418.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=22.64;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3418,352,0 chrVIII 156724 . C T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.68;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3312,328,0 chrVIII 156924 . G A 2956 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.65;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2989,304,0 chrVIII 157305 . A G 1409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.560;QD=21.68;ReadPosRankSum=1.679;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1442,150,0 chrVIII 157424 . A G 1617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-1.627;QD=24.50;ReadPosRankSum=1.680;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1650,171,0 chrVIII 157435 . A G 1418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.693;QD=23.63;ReadPosRankSum=1.675;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1451,150,0 chrVIII 157495 . T A 367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.622;DP=34;Dels=0.00;FS=3.081;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.403;QD=10.79;ReadPosRankSum=1.647;SB=-3.259e+02 GT:AD:DP:GQ:PL 1/1:2,32:34:48:400,48,0 chrVIII 157497 . A T 369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.506;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.117;QD=11.53;ReadPosRankSum=1.829;SB=-2.809e+02 GT:AD:DP:GQ:PL 1/1:2,30:32:48:402,48,0 chrVIII 157616 . A G 2492 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=26.51;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2525,255,0 chrVIII 157807 . T C 4837.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.7202;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.93;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4837,508,0 chrVIII 158014 . G A 5323.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=12.6511;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.55;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:5323,559,0 chrVIII 158092 . G T 4593.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.2088;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.87;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4593,492,0 chrVIII 158374 . A G 4556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.3444;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.954;QD=24.36;ReadPosRankSum=1.714;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4556,466,0 chrVIII 158566 . G A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3782,379,0 chrVIII 158962 . G C 5918.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=19.7178;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.86;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,241:248:99:5918,604,0 chrVIII 159238 . T G 4550.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.2714;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.52;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4550,486,0 chrVIII 159377 . T A 4476.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.2128;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.33;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4476,454,0 chrVIII 159599 . G A 4645.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.2812;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.88;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4645,490,0 chrVIII 159758 . T C 6009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=249;Dels=0.00;FS=2.968;HaplotypeScore=15.2062;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=0.472;QD=24.13;ReadPosRankSum=2.430;SB=-3.007e+03 GT:AD:DP:GQ:PL 1/1:2,246:249:99:6009,619,0 chrVIII 159848 . G A 5502.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.1244;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.24;SB=-2.933e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5502,577,0 chrVIII 159887 . A C 6307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=277;Dels=0.00;FS=9.114;HaplotypeScore=21.6028;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.085;QD=22.77;ReadPosRankSum=3.404;SB=-3.450e+03 GT:AD:DP:GQ:PL 1/1:4,272:277:99:6307,679,0 chrVIII 159950 . G T 5102.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.5528;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.08;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:0,239:242:99:5102,538,0 chrVIII 159962 . G A 4936.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.28;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:4936,499,0 chrVIII 160136 . T C 4459.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.73;SB=-2.910e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4459,474,0 chrVIII 160450 . T C 5235.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.8461;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.58;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5235,535,0 chrVIII 160876 . C T 4207.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4207,424,0 chrVIII 161504 . T C 1404 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=18.97;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1437,144,0 chrVIII 161715 . C T 1352 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=17.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1385,141,0 chrVIII 161791 . G T 218.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=9.8293;MLEAC=1;MLEAF=0.500;MQ=58.72;MQ0=0;MQRankSum=1.476;QD=3.76;ReadPosRankSum=-0.371;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,24:58:99:248,0,370 chrVIII 161994 . G A 6241.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=22.9903;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.73;SB=-3.327e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:6241,640,0 chrVIII 162108 . A G 6856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.997;DP=296;Dels=0.00;FS=9.804;HaplotypeScore=18.2906;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.902;QD=23.16;ReadPosRankSum=1.932;SB=-3.631e+03 GT:AD:DP:GQ:PL 1/1:3,293:296:99:6856,739,0 chrVIII 162618 . A G 4869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=227;Dels=0.00;FS=3.951;HaplotypeScore=10.6895;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-1.272;QD=21.45;ReadPosRankSum=1.701;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4869,520,0 chrVIII 162628 . C T 4874.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.8496;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.05;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4874,490,0 chrVIII 162837 . G A 6813.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=11.9826;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.57;SB=-3.811e+03 GT:AD:DP:GQ:PL 1/1:0,287:289:99:6813,694,0 chrVIII 162897 . T C 7043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=10.2085;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.246;QD=24.20;ReadPosRankSum=1.684;SB=-3.800e+03 GT:AD:DP:GQ:PL 1/1:1,288:291:99:7043,748,0 chrVIII 163422 . G C 3197 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.60;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3230,334,0 chrVIII 163476 . A G 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.1437;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.415;QD=21.03;ReadPosRankSum=1.683;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3041,321,0 chrVIII 163571 . G A 3028 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3061,301,0 chrVIII 163731 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3426,352,0 chrVIII 164274 . A G 4793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=197;Dels=0.00;FS=6.087;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.754;QD=24.33;ReadPosRankSum=2.425;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4793,508,0 chrVIII 164613 . C T 3940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.454;DP=165;Dels=0.00;FS=3.522;HaplotypeScore=15.2399;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.513;QD=23.88;ReadPosRankSum=0.428;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,161:165:99:3940,400,0 chrVIII 164807 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=23.13;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3400,354,0 chrVIII 164863 . C T 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.905;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.8347;MLEAC=2;MLEAF=1.00;MQ=41.17;MQ0=0;MQRankSum=-0.712;QD=16.34;ReadPosRankSum=1.155;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:2991,315,0 chrVIII 164870 . T C 2816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=164;Dels=0.00;FS=4.215;HaplotypeScore=4.1672;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;MQRankSum=0.441;QD=17.17;ReadPosRankSum=1.711;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:2849,291,0 chrVIII 164881 . C A 2492 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=36.11;MQ0=0;QD=16.72;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2525,252,0 chrVIII 164891 . T C 2086 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;QD=15.34;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2119,216,0 chrVIII 164893 . A G 2105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=0;MQRankSum=0.187;QD=15.14;ReadPosRankSum=1.707;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2138,225,0 chrVIII 164927 . T A 2248 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=20.25;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2281,231,0 chrVIII 164952 . T C 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-1.342;QD=23.47;ReadPosRankSum=1.708;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3333,348,0 chrVIII 165142 . G A 3053 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=21.20;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3086,310,0 chrVIII 165143 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=21.26;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3094,313,0 chrVIII 165698 . A G 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=144;Dels=0.00;FS=6.298;HaplotypeScore=9.7530;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-2.415;QD=23.83;ReadPosRankSum=2.381;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3432,369,0 chrVIII 165727 . G A 3370.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.24;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3370,340,0 chrVIII 165797 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2844;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.31;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3403,352,0 chrVIII 165835 . G A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3861,408,0 chrVIII 165867 . T G 4170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.181;QD=25.27;ReadPosRankSum=1.647;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:4170,427,0 chrVIII 166541 . G A 4945.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.2283;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.97;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4945,523,0 chrVIII 166793 . A G 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=143;Dels=0.00;FS=6.048;HaplotypeScore=5.7971;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.298;QD=23.59;ReadPosRankSum=2.894;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3374,357,0 chrVIII 166940 . T C 4304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.901;QD=24.59;ReadPosRankSum=1.673;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4304,442,0 chrVIII 166991 . A C 4077.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.32;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:4077,421,0 chrVIII 167096 . G A 5324.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.7847;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5324,538,0 chrVIII 167286 . T C 4132.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.4870;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=24.31;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:4132,436,0 chrVIII 167453 . G A 2065 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=20.45;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2098,213,0 chrVIII 167475 . G A 1500 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=18.52;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1533,153,0 chrVIII 167487 . C T 1212 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=17.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1245,126,0 chrVIII 167512 . C T 1082 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=18.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1115,108,0 chrVIII 167543 . T C 1080 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=20.77;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1113,111,0 chrVIII 167557 . T A 929 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=42.5264;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=19.35;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:962,99,0 chrVIII 167575 . G T 863 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.07;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:896,90,0 chrVIII 167580 . G A 841 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.02;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:87:874,87,0 chrVIII 167593 . T C 640 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.65;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:673,69,0 chrVIII 167656 . T C 378 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=12.60;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:42:411,42,0 chrVIII 167671 . A G 597 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=13.57;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,43:44:66:630,66,0 chrVIII 167797 . A G 1832 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=25.44;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1865,201,0 chrVIII 167848 . C T 2898 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=27.60;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2931,300,0 chrVIII 167910 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=23.66;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2920,297,0 chrVIII 167923 . C T 2617 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.10;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2650,270,0 chrVIII 167968 . C T 3091 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.73;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3124,322,0 chrVIII 168070 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.01;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3231,345,0 chrVIII 168253 . G A 3530.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.18;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3530,352,0 chrVIII 168433 . T C 3129 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.73;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3162,330,0 chrVIII 168439 . C T 3048 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.17;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3081,318,0 chrVIII 168804 . G A 740 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.42;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:81:773,81,0 chrVIII 169202 . C T 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.095;DP=271;Dels=0.01;FS=3.653;HaplotypeScore=211.6932;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.149;QD=13.10;ReadPosRankSum=-11.330;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:85,182:268:99:3550,358,0 chrVIII 169586 . T A 3809.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.7988;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.73;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3809,391,0 chrVIII 169760 . A G 2679 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.14;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2712,279,0 chrVIII 169769 . G A 2851 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.93;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2884,291,0 chrVIII 169868 . C T 4968.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.0961;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.96;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4968,520,0 chrVIII 170035 . G A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.8200;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=24.72;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3486,352,0 chrVIII 170595 . C T 514 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.73;MQ0=0;QD=19.77;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:54:547,54,0 chrVIII 170680 . T C 614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-0.418;QD=21.17;ReadPosRankSum=1.614;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:69:647,69,0 chrVIII 170740 . C G 1459 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1492,153,0 chrVIII 171171 . A G 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.2925;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.818;QD=24.45;ReadPosRankSum=1.711;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3985,412,0 chrVIII 171273 . C T 3494.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.8978;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.41;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3494,358,0 chrVIII 171279 . C T 3563.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.3416;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.69;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3563,378,0 chrVIII 171537 . A C 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-0.135;QD=24.12;ReadPosRankSum=1.687;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3714,382,0 chrVIII 171564 . G A 3690.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.21;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3690,376,0 chrVIII 171761 . G T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.95;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3617,381,0 chrVIII 172443 . G A 4055.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.19;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:4055,421,0 chrVIII 172560 . G T 4635.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.9083;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.19;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4635,478,0 chrVIII 172608 . G A 3435.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.7269;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.69;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3435,363,0 chrVIII 172701 . C T 5095.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.50;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5095,517,0 chrVIII 172837 . C G 4828.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.1278;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.51;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4828,490,0 chrVIII 172909 . C T 3515.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.39;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3515,361,0 chrVIII 173105 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=63.1297;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=17.21;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1668,171,0 chrVIII 173130 . A T 94.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.478;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=58.0406;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;MQRankSum=-1.412;QD=2.77;ReadPosRankSum=-4.788;SB=-1.826e+01 GT:AD:DP:GQ:PL 1/1:17,17:34:15:127,15,0 chrVIII 173207 . A G 1096 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.57;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1129,120,0 chrVIII 173271 . A G 2519 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.99;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2552,261,0 chrVIII 173295 . G A 2975 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.54;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3008,298,0 chrVIII 173412 . G A 6479.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=9.2716;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=27.22;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,236:238:99:6479,640,0 chrVIII 173562 . G A 8143.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=18.2131;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.07;SB=-4.435e+03 GT:AD:DP:GQ:PL 1/1:0,350:353:99:8143,880,0 chrVIII 173637 . G T 8506.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=23.0579;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.37;SB=-4.675e+03 GT:AD:DP:GQ:PL 1/1:0,348:349:99:8506,854,0 chrVIII 173923 . T G 10407.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.089;DP=430;Dels=0.00;FS=7.306;HaplotypeScore=24.4090;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.372;QD=24.20;ReadPosRankSum=4.169;SB=-3.566e+03 GT:AD:DP:GQ:PL 1/1:6,420:430:99:10407,1114,0 chrVIII 174093 . T C 11289.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=481;Dels=0.00;FS=6.929;HaplotypeScore=10.8520;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.601;QD=23.47;ReadPosRankSum=2.434;SB=-6.012e+03 GT:AD:DP:GQ:PL 1/1:2,477:481:99:11289,1195,0 chrVIII 174120 . A C 10020.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=475;Dels=0.00;FS=0.000;HaplotypeScore=18.4511;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.388;QD=21.09;ReadPosRankSum=1.681;SB=-5.148e+03 GT:AD:DP:GQ:PL 1/1:1,472:475:99:10020,1039,0 chrVIII 174165 . A C 10715.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.221;DP=489;Dels=0.00;FS=6.021;HaplotypeScore=47.1123;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.290;QD=21.91;ReadPosRankSum=3.811;SB=-5.127e+03 GT:AD:DP:GQ:PL 1/1:7,475:489:99:10715,1117,0 chrVIII 175012 . C T 9374.01 filter AC=2;AF=1.00;AN=2;DP=384;Dels=0.00;FS=0.000;HaplotypeScore=27.4113;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.41;SB=-4.655e+03 GT:AD:DP:GQ:PL 1/1:0,384:384:99:9374,935,0 chrVIII 175141 . T C 10310.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.137;DP=443;Dels=0.00;FS=25.668;HaplotypeScore=20.1009;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.055;QD=23.27;ReadPosRankSum=4.146;SB=-4.557e+03 GT:AD:DP:GQ:PL 1/1:6,437:443:99:10310,1096,0 chrVIII 175174 . C T 8501.01 filter AC=2;AF=1.00;AN=2;DP=378;Dels=0.00;FS=0.000;HaplotypeScore=27.7157;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.49;SB=-3.993e+03 GT:AD:DP:GQ:PL 1/1:0,375:378:99:8501,889,0 chrVIII 175263 . T C 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=202;Dels=0.00;FS=6.087;HaplotypeScore=12.8269;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.131;QD=20.46;ReadPosRankSum=1.715;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,198:202:99:4133,421,0 chrVIII 175480 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.01;FS=0.000;HaplotypeScore=29.0823;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.61;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3380,351,0 chrVIII 175661 . T C 13011.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=514;Dels=0.00;FS=0.000;HaplotypeScore=43.2295;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.327;QD=25.31;ReadPosRankSum=2.975;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:3,511:514:99:13011,1352,0 chrVIII 175731 . A C 10930.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=583;Dels=0.01;FS=4.393;HaplotypeScore=17.3258;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.551;QD=18.75;ReadPosRankSum=1.678;SB=-5.635e+03 GT:AD:DP:GQ:PL 1/1:1,572:578:99:10930,1159,0 chrVIII 175734 . A C 11189.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=598;Dels=0.00;FS=8.459;HaplotypeScore=21.6479;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.700;QD=18.71;ReadPosRankSum=2.429;SB=-6.321e+03 GT:AD:DP:GQ:PL 1/1:2,594:598:99:11189,1177,0 chrVIII 176426 . A G 7438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.291;DP=327;Dels=0.00;FS=4.892;HaplotypeScore=17.6432;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.771;QD=22.75;ReadPosRankSum=3.408;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:4,322:327:99:7438,778,0 chrVIII 176679 . T C 2669 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7545;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.92;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2702,288,0 chrVIII 176826 . T C 1385 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=15.8702;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=17.76;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1418,147,0 chrVIII 177049 . A G 2185 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=41.24;MQ0=0;QD=26.98;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2218,228,0 chrVIII 177113 . C T 1954 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=25.38;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1987,204,0 chrVIII 177333 . A G 5213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=217;Dels=0.00;FS=11.700;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.931;QD=24.02;ReadPosRankSum=2.949;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:3,214:217:99:5213,538,0 chrVIII 177610 . T C 5506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.185;DP=304;Dels=0.00;FS=2.844;HaplotypeScore=10.4908;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.244;QD=18.11;ReadPosRankSum=2.408;SB=-3.290e+03 GT:AD:DP:GQ:PL 1/1:2,295:304:99:5506,591,0 chrVIII 177619 . A C 6268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=304;Dels=0.00;FS=3.757;HaplotypeScore=7.4774;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=1.014;QD=20.62;ReadPosRankSum=1.641;SB=-3.497e+03 GT:AD:DP:GQ:PL 1/1:1,303:304:99:6268,658,0 chrVIII 177793 . C G 7401.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=13.9162;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.72;SB=-3.133e+03 GT:AD:DP:GQ:PL 1/1:0,309:312:99:7401,757,0 chrVIII 177867 . A G 4813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.600;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=30.5905;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=1.353;QD=22.28;ReadPosRankSum=2.233;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4813,478,0 chrVIII 178041 . G T 2770 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.89;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2803,282,0 chrVIII 178098 . T A 1494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.446;DP=97;Dels=0.00;FS=3.147;HaplotypeScore=6.8571;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;MQRankSum=-1.518;QD=15.40;ReadPosRankSum=1.589;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1527,159,0 chrVIII 178104 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.4062;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=15.84;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1633,165,0 chrVIII 178133 . T A 1259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=100;Dels=0.03;FS=2.988;HaplotypeScore=20.6200;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;MQRankSum=-1.270;QD=12.59;ReadPosRankSum=2.398;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1292,129,0 chrVIII 178619 . G A 2528 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.98;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2561,258,0 chrVIII 178632 . A G 2659 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.12;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2692,282,0 chrVIII 178799 . T C 2513 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=1.341;QD=22.44;ReadPosRankSum=2.405;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2546,264,0 chrVIII 178801 . A G 2365 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=21.90;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2398,243,0 chrVIII 178808 . G A 2296 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=22.29;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2329,228,0 chrVIII 178843 . C T 2060 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=22.15;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2093,210,0 chrVIII 178909 . C T 3209 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=23.25;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3242,325,0 chrVIII 179026 . C T 2177 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.4570;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=20.93;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2210,228,0 chrVIII 179058 . A T 1801 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.65;MQ0=0;QD=16.23;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1834,189,0 chrVIII 179071 . T A 1634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=34.86;MQ0=0;MQRankSum=-1.409;QD=13.85;ReadPosRankSum=1.673;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1667,171,0 chrVIII 179085 . A G 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=130;Dels=0.00;FS=8.531;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.63;MQ0=0;MQRankSum=-0.917;QD=11.81;ReadPosRankSum=2.393;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:1568,171,0 chrVIII 179088 . C T 1516 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.37;MQ0=0;QD=11.07;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1549,162,0 chrVIII 179112 . C T 2249 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=0;QD=15.20;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2282,234,0 chrVIII 179142 . T C 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=-0.185;QD=17.76;ReadPosRankSum=1.686;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2697,279,0 chrVIII 179208 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=19.13;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2386,246,0 chrVIII 179241 . C T 2064 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;QD=15.76;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2097,228,0 chrVIII 179245 . T G 2061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=132;Dels=0.00;FS=2.833;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.80;MQ0=0;MQRankSum=-1.323;QD=15.61;ReadPosRankSum=2.412;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2094,231,0 chrVIII 179253 . A G 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.637;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.03;MQ0=0;MQRankSum=-1.008;QD=14.94;ReadPosRankSum=1.706;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2050,234,0 chrVIII 179265 . C T 1909 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=38.09;MQ0=0;QD=14.35;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1942,213,0 chrVIII 179361 . A G 3718.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.3209;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=23.68;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3718,393,0 chrVIII 179402 . A G 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=1.183;QD=22.49;ReadPosRankSum=1.711;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,163:167:99:3756,399,0 chrVIII 179572 . T C 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-1.732;QD=19.88;ReadPosRankSum=1.689;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3253,333,0 chrVIII 179574 . A G 3285.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.40;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3285,337,0 chrVIII 179748 . C T 4475.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=17.3944;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.93;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4475,454,0 chrVIII 180100 . G A 3543.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3543,367,0 chrVIII 180544 . C G 6332.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.98;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:0,262:264:99:6332,655,0 chrVIII 180749 . G A 6287.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=17.5777;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.56;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:6287,631,0 chrVIII 180818 . C T 7026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.642;QD=26.02;ReadPosRankSum=-0.115;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:1,269:270:99:7026,715,0 chrVIII 180918 . A G 4280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=15.1319;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.390;QD=19.19;ReadPosRankSum=1.701;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:4280,457,0 chrVIII 181049 . G A 5183.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=16.8932;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.24;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5183,523,0 chrVIII 181082 . A G 5093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=11.9254;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.131;QD=22.64;ReadPosRankSum=1.640;SB=-2.858e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5093,544,0 chrVIII 181132 . A G 4083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.2072;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.121;QD=23.47;ReadPosRankSum=2.421;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:4083,402,0 chrVIII 181842 . G A 4621.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4621,484,0 chrVIII 182092 . T C 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.705;DP=140;Dels=0.00;FS=2.590;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.569;QD=24.71;ReadPosRankSum=2.878;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:3459,358,0 chrVIII 182852 . T C 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.139;DP=167;Dels=0.00;FS=6.153;HaplotypeScore=15.7326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.650;QD=21.99;ReadPosRankSum=2.405;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3672,379,0 chrVIII 183402 . G A 4448.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.4961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4448,466,0 chrVIII 183482 . A G 4108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=167;Dels=0.00;FS=6.531;HaplotypeScore=10.6154;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-1.125;QD=24.60;ReadPosRankSum=2.288;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4108,424,0 chrVIII 183721 . T C 1829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=88;Dels=0.00;FS=10.176;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;MQRankSum=0.673;QD=20.78;ReadPosRankSum=2.393;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:2,84:88:99:1862,192,0 chrVIII 183728 . G A 1925 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.6432;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=21.63;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1958,198,0 chrVIII 183741 . C T 1863 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=20.70;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1896,189,0 chrVIII 183744 . C T 1761 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=19.57;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1794,189,0 chrVIII 183845 . T C 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=109;Dels=0.00;FS=2.571;HaplotypeScore=13.6402;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.093;QD=24.01;ReadPosRankSum=2.935;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:3,105:109:99:2650,273,0 chrVIII 183913 . C G 2740 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=23.62;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2773,285,0 chrVIII 183923 . T C 2549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.729;QD=22.56;ReadPosRankSum=2.406;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2582,270,0 chrVIII 184025 . T C 3180 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=12.6661;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.24;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3213,333,0 chrVIII 184065 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.08;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3300,348,0 chrVIII 184104 . C T 2997 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.20;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3030,333,0 chrVIII 184171 . A G 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=123;Dels=0.00;FS=8.859;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.920;QD=23.37;ReadPosRankSum=3.386;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:4,119:123:99:2908,300,0 chrVIII 184258 . A G 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=126;Dels=0.00;FS=3.005;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.260;QD=23.60;ReadPosRankSum=2.390;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,122:126:99:3007,315,0 chrVIII 184281 . G A 3162 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=24.32;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3195,316,0 chrVIII 184323 . A G 3318.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.53;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3318,345,0 chrVIII 184572 . A G 2685 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.37;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2718,285,0 chrVIII 184766 . C T 1372 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.66;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1405,144,0 chrVIII 184840 . A T 950 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=18.27;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:983,99,0 chrVIII 184847 . A G 1043 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=16.56;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1076,111,0 chrVIII 184872 . A G 1485 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=18.33;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1518,162,0 chrVIII 185022 . G A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=26.83;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3327,357,0 chrVIII 185064 . G A 4282.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0990;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=25.64;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4282,448,0 chrVIII 185403 . C T 4511.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.1242;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.49;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4511,451,0 chrVIII 185480 . G A 4231.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.7370;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.87;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4231,427,0 chrVIII 185547 . C T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=60.01;MQ0=0;QD=27.43;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4334,436,0 chrVIII 185766 . C T 4272.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=23.09;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4272,468,0 chrVIII 186657 . C T 3615.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.4910;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=25.82;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3615,367,0 chrVIII 186876 . C T 712 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=30.7504;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=20.94;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,33:34:75:745,75,0 chrVIII 186921 . G A 320 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.00;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:36:353,36,0 chrVIII 187320 . A C 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.3837;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.703;QD=25.83;ReadPosRankSum=0.501;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:1,120:124:99:3236,339,0 chrVIII 187527 . T A 4337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=177;Dels=0.00;FS=4.486;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.341;QD=24.50;ReadPosRankSum=1.693;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4337,430,0 chrVIII 187908 . G A 4264.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=190.1748;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.83;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4264,471,0 chrVIII 188673 . C A 6332.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=12.1295;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=25.03;SB=-3.228e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:6332,649,0 chrVIII 188821 . C T 9308.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=380;Dels=0.00;FS=0.000;HaplotypeScore=8.9653;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.462;QD=24.49;ReadPosRankSum=0.827;SB=-4.028e+03 GT:AD:DP:GQ:PL 1/1:1,378:380:99:9308,950,0 chrVIII 188841 . A G 7381.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.213;DP=366;Dels=0.00;FS=2.459;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=0.870;QD=20.17;ReadPosRankSum=2.947;SB=-3.994e+03 GT:AD:DP:GQ:PL 1/1:3,360:366:99:7381,763,0 chrVIII 188853 . G A 7362.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=10.6421;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=21.09;SB=-3.785e+03 GT:AD:DP:GQ:PL 1/1:0,348:349:99:7362,727,0 chrVIII 188958 . C G 5141.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=13.6060;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.40;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,248:252:99:5141,529,0 chrVIII 189054 . T C 5684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=281;Dels=0.00;FS=5.296;HaplotypeScore=18.1897;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-1.276;QD=20.23;ReadPosRankSum=1.720;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:1,280:281:99:5684,589,0 chrVIII 189143 . A G 5991.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=10.5248;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.87;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5991,616,0 chrVIII 189221 . C G 4814.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.83;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4814,502,0 chrVIII 189356 . G A 7241.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=21.6932;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.75;SB=-4.799e+03 GT:AD:DP:GQ:PL 1/1:0,345:349:99:7241,733,0 chrVIII 189608 . A G 5464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=15.0629;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.352;QD=21.68;ReadPosRankSum=1.677;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,250:252:99:5464,586,0 chrVIII 190024 . C T 6753.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=18.6369;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.53;SB=-3.016e+03 GT:AD:DP:GQ:PL 1/1:0,285:287:99:6753,679,0 chrVIII 190064 . T C 8159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=352;Dels=0.00;FS=0.000;HaplotypeScore=23.5994;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.220;QD=23.18;ReadPosRankSum=2.436;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:2,349:352:99:8159,871,0 chrVIII 190671 . C T 7643.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-4.173e+03 GT:AD:DP:GQ:PL 1/1:0,314:314:99:7643,802,0 chrVIII 190872 . A T 5128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.745;DP=232;Dels=0.00;FS=2.575;HaplotypeScore=17.7101;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.970;QD=22.10;ReadPosRankSum=2.944;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:3,229:232:99:5128,517,0 chrVIII 191072 . T C 5242.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.0099;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.61;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5242,547,0 chrVIII 191248 . A G 5777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=256;Dels=0.00;FS=3.535;HaplotypeScore=15.6797;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.632;QD=22.57;ReadPosRankSum=1.718;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:1,254:256:99:5777,622,0 chrVIII 191348 . A T 5072.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=20.3338;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.70;SB=-3.137e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5072,514,0 chrVIII 191643 . C A 4672.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.24;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:4672,472,0 chrVIII 191691 . C T 5450.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.0595;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.77;SB=-2.945e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5450,574,0 chrVIII 192124 . T C 9179.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=380;Dels=0.00;FS=0.000;HaplotypeScore=19.8181;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.204;QD=24.16;ReadPosRankSum=2.417;SB=-3.032e+03 GT:AD:DP:GQ:PL 1/1:2,376:380:99:9179,955,0 chrVIII 192892 . C T 2708 filter AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=11;QD=20.67;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2741,282,0 chrVIII 192973 . G A 4639.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=1;QD=23.20;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4639,487,0 chrVIII 193075 . G A 1902 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.445;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=15.2427;MLEAC=2;MLEAF=1.00;MQ=24.71;MQ0=18;MQRankSum=-1.732;QD=11.96;ReadPosRankSum=-0.718;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:3,155:159:99:1935,175,0 chrVIII 193114 . T C 1517 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=22.26;MQ0=17;MQRankSum=-1.732;QD=11.32;ReadPosRankSum=1.703;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:1,133:134:99:1550,156,0 chrVIII 193183 . T G 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.353;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.8493;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=1;MQRankSum=-0.280;QD=22.56;ReadPosRankSum=1.058;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3124,301,0 chrVIII 193245 . C T 3688.01 filter AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=9.2460;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=4;QD=23.49;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3688,370,0 chrVIII 193626 . G C 2513 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.66;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2546,264,0 chrVIII 193633 . A G 2555 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=23.23;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2588,270,0 chrVIII 194308 . A G 6032.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.028;DP=287;Dels=0.00;FS=11.856;HaplotypeScore=15.0747;MLEAC=2;MLEAF=1.00;MQ=39.61;MQ0=20;MQRankSum=-1.690;QD=21.02;ReadPosRankSum=1.954;SB=-3.366e+03 GT:AD:DP:GQ:PL 1/1:24,262:287:99:6032,580,0 chrVIII 194338 . A G 5970.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.034;DP=312;Dels=0.00;FS=33.715;HaplotypeScore=22.7375;MLEAC=2;MLEAF=1.00;MQ=30.42;MQ0=39;MQRankSum=-6.317;QD=19.13;ReadPosRankSum=1.323;SB=-3.153e+03 GT:AD:DP:GQ:PL 1/1:53,259:312:99:5970,426,0 chrVIII 194939 . C G 1805 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.39;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1838,192,0 chrVIII 196135 . C T 5042.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=25.59;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5042,526,0 chrVIII 196160 . G A 4991.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=23.88;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4991,514,0 chrVIII 196468 . A G 4273.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.5053;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.71;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4273,445,0 chrVIII 196532 . A G 4672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=186;Dels=0.00;FS=3.032;HaplotypeScore=12.2196;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.112;QD=25.12;ReadPosRankSum=2.357;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4672,481,0 chrVIII 196732 . T C 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=172;Dels=0.00;FS=6.961;HaplotypeScore=20.5057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.157;QD=20.82;ReadPosRankSum=2.421;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3581,375,0 chrVIII 196831 . C T 3438.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.5884;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.28;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3438,360,0 chrVIII 197974 . G A 2709 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2742,273,0 chrVIII 198244 . T A 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=120;Dels=0.00;FS=6.820;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=2.040;QD=25.02;ReadPosRankSum=2.347;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:3036,284,0 chrVIII 198394 . G C 3685.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.24;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3685,396,0 chrVIII 198508 . A G 2496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=129;Dels=0.00;FS=4.116;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.953;QD=19.35;ReadPosRankSum=1.705;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2529,267,0 chrVIII 198549 . T C 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.9286;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.024;QD=21.33;ReadPosRankSum=1.661;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3190,330,0 chrVIII 198648 . A G 3456.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.35;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3456,361,0 chrVIII 199139 . G A 4462.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.8377;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.25;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4462,466,0 chrVIII 199421 . C A 3967.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.0247;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3967,400,0 chrVIII 199777 . A G 4292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=181;Dels=0.00;FS=9.405;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.774;QD=23.71;ReadPosRankSum=2.927;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:3,175:181:99:4292,445,0 chrVIII 200617 . A G 4181.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.74;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4181,436,0 chrVIII 202737 . A C 3426.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.8475;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.79;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3426,363,0 chrVIII 203255 . T G 4429.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.8835;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.94;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4429,457,0 chrVIII 203274 . C A 4345.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.97;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4345,439,0 chrVIII 203615 . A G 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=3.035;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.452;QD=25.04;ReadPosRankSum=2.411;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3238,339,0 chrVIII 203842 . C T 3562.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=26.98;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3562,358,0 chrVIII 203888 . A G 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=99;Dels=0.00;FS=13.527;HaplotypeScore=14.3993;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.719;QD=23.10;ReadPosRankSum=2.928;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:3,94:99:99:2320,243,0 chrVIII 208566 . C T 5919.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=25.51;SB=-3.188e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5919,595,0 chrVIII 208592 . G A 5716.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=12.4383;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.33;SB=-3.228e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5716,598,0 chrVIII 209078 . A C 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.007;DP=213;Dels=0.00;FS=3.706;HaplotypeScore=4.4892;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.702;QD=16.93;ReadPosRankSum=3.565;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:6,207:213:99:3606,437,0 chrVIII 209079 . C T 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.958;DP=207;Dels=0.00;FS=3.008;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=1.839;QD=17.01;ReadPosRankSum=1.467;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:2,203:207:99:3521,425,0 chrVIII 209095 . C A 4092.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.38;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:4092,403,0 chrVIII 209176 . C T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3342,351,0 chrVIII 209243 . C T 4052.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.0419;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.78;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4052,412,0 chrVIII 210535 . T C 1309 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=25.67;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1342,135,0 chrVIII 210710 . A T 867 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:90:900,90,0 chrVIII 211462 . T C 5010.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.4820;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=26.51;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5010,514,0 chrVIII 211534 . T A 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=180;Dels=0.00;FS=3.034;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=0.075;QD=20.39;ReadPosRankSum=2.422;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3671,393,0 chrVIII 211550 . C G 3845.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.6006;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.35;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3845,391,0 chrVIII 211655 . T G 4483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=181;Dels=0.00;FS=3.031;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=1.311;QD=24.77;ReadPosRankSum=2.381;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:4483,460,0 chrVIII 211693 . G A 3951.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.84;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3951,409,0 chrVIII 211701 . G A 3927.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=23.24;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3927,400,0 chrVIII 211825 . G A 3044 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=23.97;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3077,318,0 chrVIII 212243 . C G 17953.01 filter AC=2;AF=1.00;AN=2;DP=748;DS;Dels=0.00;FS=0.000;HaplotypeScore=45.0397;MLEAC=2;MLEAF=1.00;MQ=38.00;MQ0=0;QD=24.00;SB=-9.138e+03 GT:AD:DP:GQ:PL 1/1:0,742:745:99:17953,1865,0 chrVIII 214161 . A G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.38;MQ0=24;QD=0.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,24:26:6:55,6,0 chrVIII 216123 . C T 1319 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=25.41;MQ0=30;QD=16.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1352,135,0 chrVIII 216159 . A G 1540 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=25;QD=17.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,84:87:99:1573,168,0 chrVIII 217536 . A G 5410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.1201;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.443;QD=23.73;ReadPosRankSum=1.702;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5410,553,0 chrVIII 218189 . T C 6470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=21.8488;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.918;QD=23.70;ReadPosRankSum=1.719;SB=-3.215e+03 GT:AD:DP:GQ:PL 1/1:2,267:273:99:6470,673,0 chrVIII 218580 . C T 6813.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=19.0384;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=22.49;SB=-2.859e+03 GT:AD:DP:GQ:PL 1/1:0,300:303:99:6813,676,0 chrVIII 218718 . A G 4436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.205;DP=225;Dels=0.00;FS=10.032;HaplotypeScore=23.0086;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.199;QD=19.72;ReadPosRankSum=4.491;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:7,216:225:99:4436,469,0 chrVIII 218883 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.5900;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.66;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:2720,271,0 chrVIII 219038 . A G 7440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=276;Dels=0.00;FS=14.911;HaplotypeScore=17.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.440;QD=26.96;ReadPosRankSum=2.396;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:2,274:276:99:7440,766,0 chrVIII 219303 . A G 6547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.995;DP=313;Dels=0.00;FS=4.628;HaplotypeScore=19.8836;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.701;QD=20.92;ReadPosRankSum=4.137;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:6,304:313:99:6547,673,0 chrVIII 219407 . T C 4470.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4470,472,0 chrVIII 219461 . C A 5005.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.80;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5005,502,0 chrVIII 219780 . T C 3871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=166;Dels=0.00;FS=3.549;HaplotypeScore=14.3408;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.074;QD=23.32;ReadPosRankSum=1.711;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:1,162:166:99:3871,411,0 chrVIII 219876 . C T 2651 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=22.85;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2684,291,0 chrVIII 219879 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=24.39;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2813,283,0 chrVIII 219926 . T C 2478 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=22.12;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2511,258,0 chrVIII 219934 . T C 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=5.500;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-0.094;QD=21.15;ReadPosRankSum=1.701;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2360,240,0 chrVIII 220015 . T C 4012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=17.3915;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.261;QD=23.60;ReadPosRankSum=1.712;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4012,421,0 chrVIII 220140 . T C 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.088;QD=20.81;ReadPosRankSum=2.353;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3217,333,0 chrVIII 220151 . G A 3088 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=20.32;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3121,316,0 chrVIII 220155 . T C 3191 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=21.27;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3224,330,0 chrVIII 221114 . C T 2275 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.28;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2308,231,0 chrVIII 221387 . A G 1774 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.74;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1807,186,0 chrVIII 221395 . T A 1787 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.86;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1820,195,0 chrVIII 221591 . A G 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=127;Dels=0.00;FS=4.157;HaplotypeScore=7.3206;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.624;QD=24.77;ReadPosRankSum=1.649;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:3179,339,0 chrVIII 221844 . G A 5631.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.0228;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5631,571,0 chrVIII 221939 . G A 4354.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4354,448,0 chrVIII 222117 . G C 4187.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.9396;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.04;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4187,430,0 chrVIII 222260 . T C 4762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.2017;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.208;QD=25.74;ReadPosRankSum=1.713;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4762,493,0 chrVIII 222295 . T C 4106.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.20;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4106,433,0 chrVIII 222531 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=149;Dels=0.00;FS=4.907;HaplotypeScore=10.2305;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.573;QD=21.56;ReadPosRankSum=3.400;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:4,144:149:99:3246,314,0 chrVIII 222996 . T C 7419.01 PASS AC=2;AF=1.00;AN=2;DP=333;Dels=0.00;FS=0.000;HaplotypeScore=19.1662;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.28;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,333:333:99:7419,793,0 chrVIII 223354 . C T 8384.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=13.7709;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.96;SB=-4.512e+03 GT:AD:DP:GQ:PL 1/1:0,321:323:99:8384,853,0 chrVIII 223429 . C T 6846.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=16.4849;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.36;SB=-3.430e+03 GT:AD:DP:GQ:PL 1/1:0,279:281:99:6846,709,0 chrVIII 223791 . T C 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=130;Dels=0.00;FS=8.354;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.482;QD=21.85;ReadPosRankSum=2.412;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2874,294,0 chrVIII 223914 . G A 3975.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.68;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3975,397,0 chrVIII 224264 . G T 5150.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.1364;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.39;SB=-3.055e+03 GT:AD:DP:GQ:PL 1/1:0,226:230:99:5150,546,0 chrVIII 224422 . C T 3911.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0131;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3911,397,0 chrVIII 224489 . A G 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.438;DP=137;Dels=0.00;FS=8.007;HaplotypeScore=13.0926;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.750;QD=23.04;ReadPosRankSum=3.782;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:5,132:137:99:3190,327,0 chrVIII 224759 . G A 2323 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.51;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2356,243,0 chrVIII 225175 . A G 2669 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.1420;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.62;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2702,282,0 chrVIII 225748 . A G 4661.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=16.8552;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.54;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4661,487,0 chrVIII 225911 . G C 5188.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.3319;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.48;SB=-3.021e+03 GT:AD:DP:GQ:PL 1/1:0,217:221:99:5188,529,0 chrVIII 226158 . C T 7032.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.00;SB=-3.894e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:7032,736,0 chrVIII 226482 . G A 6230.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.12;SB=-3.474e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:6230,652,0 chrVIII 226659 . G A 5174.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5174,520,0 chrVIII 226755 . G A 4661.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.3296;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4661,472,0 chrVIII 226824 . G A 4822.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=16.0536;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.96;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4822,502,0 chrVIII 227009 . C T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.49;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4147,433,0 chrVIII 227158 . A T 3569.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=23.18;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3569,358,0 chrVIII 227216 . T C 2699 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=19.70;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2732,285,0 chrVIII 227218 . G A 2884 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=20.75;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2917,294,0 chrVIII 227221 . G A 2970 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=20.77;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3003,306,0 chrVIII 227226 . G C 2941 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=20.42;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2974,312,0 chrVIII 227951 . A C 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.752;DP=143;Dels=0.00;FS=4.771;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.398;QD=19.52;ReadPosRankSum=3.664;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:5,137:143:99:2824,291,0 chrVIII 227964 . G A 2818 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.27;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2851,286,0 chrVIII 228114 . C T 2058 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.39;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2091,210,0 chrVIII 229786 . G A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3782,382,0 chrVIII 230683 . G A 4393.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=21.2392;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.00;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4393,442,0 chrVIII 233361 . G A 907 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.61;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:940,96,0 chrVIII 237343 . G A 2591 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2624,288,0 chrVIII 237495 . T C 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.817;QD=25.25;ReadPosRankSum=1.667;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4014,412,0 chrVIII 237787 . C G 494 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.98;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:57:527,57,0 chrVIII 242062 . C T 2884 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=7.4806;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.30;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2917,295,0 chrVIII 248907 . T C 4025.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4025,412,0 chrVIII 252321 . C T 3169 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.1612;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3202,336,0 chrVIII 253492 . A C 2894 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.34;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2927,315,0 chrVIII 253999 . T C 3465.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3465,361,0 chrVIII 254158 . A T 3124 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3157,319,0 chrVIII 254246 . A C 3974.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3974,417,0 chrVIII 254330 . T C 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.118;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.619;QD=23.24;ReadPosRankSum=1.648;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2915,300,0 chrVIII 255648 . A G 2656 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.50;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2689,285,0 chrVIII 258556 . A G 2871 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2904,306,0 chrVIII 260343 . T C 3530.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3530,372,0 chrVIII 264180 . G C 5125.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=24.9359;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.73;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5125,532,0 chrVIII 270955 . A C 3879.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3879,408,0 chrVIII 271377 . A G 2946 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.04;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2979,309,0 chrVIII 272189 . C G 3603.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7141;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.37;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3603,373,0 chrVIII 272512 . C G 5030.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.90;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5030,538,0 chrVIII 273164 . A C 6248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=284;Dels=0.00;FS=2.852;HaplotypeScore=16.4387;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-1.158;QD=22.00;ReadPosRankSum=2.415;SB=-3.219e+03 GT:AD:DP:GQ:PL 1/1:2,281:284:99:6248,643,0 chrVIII 273178 . A T 6106.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=22.12;SB=-3.081e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:6106,616,0 chrVIII 273222 . G A 5675.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.52;SB=-3.406e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:5675,568,0 chrVIII 275820 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3972,420,0 chrVIII 277930 . G A 3548.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=25.71;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3548,355,0 chrVIII 277947 . G A 3627.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=24.18;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3627,370,0 chrVIII 280227 . C T 3348.01 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.8580;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=28.86;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3348,340,0 chrVIII 283226 . T C 2104 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.7021;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=17.98;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2137,228,0 chrVIII 283616 . T C 2782 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2815,297,0 chrVIII 287468 . A G 5336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=212;Dels=0.00;FS=3.877;HaplotypeScore=16.1263;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.138;QD=25.17;ReadPosRankSum=1.666;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:5336,568,0 chrVIII 287687 . G A 4694.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.14;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4694,490,0 chrVIII 287708 . A G 5039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=215;Dels=0.00;FS=3.027;HaplotypeScore=7.3020;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.752;QD=23.44;ReadPosRankSum=2.427;SB=-2.978e+03 GT:AD:DP:GQ:PL 1/1:2,212:215:99:5039,520,0 chrVIII 288095 . G A 3811.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.97;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3811,385,0 chrVIII 288305 . T C 4854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.744;DP=208;Dels=0.00;FS=5.780;HaplotypeScore=9.7818;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.353;QD=23.34;ReadPosRankSum=2.957;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:4854,505,0 chrVIII 288390 . T C 5213.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.5861;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.47;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5213,544,0 chrVIII 288884 . T G 2237 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.42;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2270,228,0 chrVIII 289695 . T C 3771.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3771,391,0 chrVIII 291312 . G A 4021.01 SnpCluster AC=2;AF=1.00;AN=2;DP=267;Dels=0.01;FS=0.000;HaplotypeScore=3.5097;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=15.06;SB=-2.890e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:4021,418,0 chrVIII 291315 . A G 3897.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=267;Dels=0.00;FS=12.362;HaplotypeScore=2.9313;MLEAC=2;MLEAF=1.00;MQ=34.23;MQ0=0;MQRankSum=-2.523;QD=14.60;ReadPosRankSum=2.869;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:3,264:267:99:3897,411,0 chrVIII 291318 . G A 4065.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=279;Dels=0.00;FS=8.350;HaplotypeScore=10.5068;MLEAC=2;MLEAF=1.00;MQ=33.58;MQ0=0;MQRankSum=-2.001;QD=14.57;ReadPosRankSum=2.432;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:2,277:279:99:4065,424,0 chrVIII 291327 . T G 3505.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=452.9047;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=0;QD=13.03;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:3505,367,0 chrVIII 291360 . T G 1769 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=6.3424;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.46;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:1802,204,0 chrVIII 291363 . A T 1433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=221;Dels=0.00;FS=3.999;HaplotypeScore=6.3424;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.243;QD=6.48;ReadPosRankSum=1.716;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:1466,183,0 chrVIII 291381 . G A 1670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=29.20;MQ0=0;MQRankSum=-1.599;QD=7.11;ReadPosRankSum=0.317;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:1703,174,0 chrVIII 291396 . G A 1678 SnpCluster AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.51;MQ0=0;QD=7.30;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:1711,177,0 chrVIII 291399 . A G 1634 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=232;Dels=0.00;FS=3.787;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.66;MQ0=0;MQRankSum=-0.060;QD=7.04;ReadPosRankSum=1.717;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:1667,177,0 chrVIII 291402 . A T 1816 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=231;Dels=0.00;FS=3.724;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.40;MQ0=0;MQRankSum=1.672;QD=7.86;ReadPosRankSum=1.717;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:1849,186,0 chrVIII 291411 . G A 1839 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=37.39;MQ0=0;QD=8.44;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:1872,192,0 chrVIII 291731 . T C 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.7013;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.327;QD=23.14;ReadPosRankSum=1.659;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3309,354,0 chrVIII 293825 . T C 3702.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.4815;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.36;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3702,385,0 chrVIII 296890 . G A 6992.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=15.8507;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.19;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:6992,691,0 chrVIII 297072 . A T 5795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=270;Dels=0.00;FS=2.585;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.014;QD=21.46;ReadPosRankSum=2.386;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:2,268:270:99:5795,586,0 chrVIII 298950 . T A 4147.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4147,415,0 chrVIII 299760 . A G 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=3.291;HaplotypeScore=9.0297;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.974;QD=24.83;ReadPosRankSum=1.667;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3973,412,0 chrVIII 301054 . A G 5809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=243;Dels=0.00;FS=9.527;HaplotypeScore=19.3576;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.178;QD=23.91;ReadPosRankSum=2.946;SB=-3.103e+03 GT:AD:DP:GQ:PL 1/1:3,240:243:99:5809,595,0 chrVIII 302070 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=152;Dels=0.00;FS=2.918;HaplotypeScore=13.2012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.371;QD=23.76;ReadPosRankSum=2.417;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:2,147:152:99:3612,370,0 chrVIII 309963 . A G 3318.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.95;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3318,345,0 chrVIII 314176 . T G 1055 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1088,117,0 chrVIII 314622 . G A 2369 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.46;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2402,243,0 chrVIII 315879 . T C 5513.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=13.6122;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.39;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5513,574,0 chrVIII 317296 . A G 5005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.579;QD=20.18;ReadPosRankSum=2.390;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:2,246:248:99:5005,517,0 chrVIII 320927 . G A 5426.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.44;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5426,562,0 chrVIII 323913 . G A 3617.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.47;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3617,384,0 chrVIII 326342 . T C 4709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=187;Dels=0.00;FS=3.641;HaplotypeScore=11.3242;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.047;QD=25.18;ReadPosRankSum=1.713;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4709,490,0 chrVIII 327549 . T C 6599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=16.7242;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.628;QD=23.74;ReadPosRankSum=1.690;SB=-3.807e+03 GT:AD:DP:GQ:PL 1/1:3,275:278:99:6599,676,0 chrVIII 328055 . A G 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.341;DP=149;Dels=0.00;FS=5.150;HaplotypeScore=11.8526;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.685;QD=22.72;ReadPosRankSum=3.353;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:4,145:149:99:3385,352,0 chrVIII 328271 . C A 5066.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.3151;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.20;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:5066,535,0 chrVIII 329627 . C T 3892.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=20.17;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:3892,391,0 chrVIII 329634 . T C 3732.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.6975;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=19.64;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3732,391,0 chrVIII 330629 . T C 2079 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.17;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2112,222,0 chrVIII 331641 . A G 4847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.1752;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.100;QD=23.19;ReadPosRankSum=2.403;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4847,508,0 chrVIII 333034 . C T 5982.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.7156;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=27.19;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5982,595,0 chrVIII 333732 . G A 4383.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.82;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4383,465,0 chrVIII 334370 . T C 3432.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.14;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3432,363,0 chrVIII 334394 . G A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.33;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3359,337,0 chrVIII 334860 . A T 5148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.5604;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.779;QD=26.00;ReadPosRankSum=0.355;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:5148,514,0 chrVIII 336067 . C T 3879.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.6500;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.79;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3879,400,0 chrVIII 336408 . T C 5253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=202;Dels=0.00;FS=2.732;HaplotypeScore=11.0287;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.339;QD=26.00;ReadPosRankSum=2.400;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:2,197:202:99:5253,538,0 chrVIII 337147 . C A 4973.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.8096;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.40;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:0,214:222:99:4973,534,0 chrVIII 337281 . C T 5892.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=21.4446;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.73;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5892,592,0 chrVIII 337323 . G A 5925.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.43;SB=-3.104e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5925,589,0 chrVIII 337365 . T A 6191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=15.9264;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.458;QD=24.37;ReadPosRankSum=1.718;SB=-3.244e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:6191,625,0 chrVIII 337794 . T A 1597 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.01;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1630,165,0 chrVIII 337824 . A G 1167 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.02;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1200,126,0 chrVIII 337892 . T C 829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.116;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.193;QD=18.42;ReadPosRankSum=1.655;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:90:862,90,0 chrVIII 339361 . C T 5488.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.17;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5488,556,0 chrVIII 339601 . A C 7006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=279;Dels=0.00;FS=3.154;HaplotypeScore=18.3027;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.232;QD=25.11;ReadPosRankSum=1.720;SB=-3.736e+03 GT:AD:DP:GQ:PL 1/1:1,276:279:99:7006,733,0 chrVIII 339762 . A C 6038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=253;Dels=0.00;FS=4.102;HaplotypeScore=14.4034;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.316;QD=23.87;ReadPosRankSum=1.718;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:1,251:253:99:6038,634,0 chrVIII 340175 . C T 2670 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2703,276,0 chrVIII 340253 . G A 1813 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=29.72;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1846,177,0 chrVIII 340348 . G T 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.932;DP=112;Dels=0.00;FS=167.200;HaplotypeScore=39.9046;MLEAC=1;MLEAF=0.500;MQ=56.06;MQ0=0;MQRankSum=-2.081;QD=0.14;ReadPosRankSum=-1.436;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:78,33:112:46:46,0,1425 chrVIII 341488 . G A 5563.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=8.0885;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.57;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5563,562,0 chrVIII 342323 . G A 4359.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.2560;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4359,459,0 chrVIII 349746 . G T 3833.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=19.7838;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.41;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3833,394,0 chrVIII 351610 . T C 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.424;DP=119;Dels=0.00;FS=12.417;HaplotypeScore=17.6096;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.192;QD=22.03;ReadPosRankSum=3.133;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:5,114:119:99:2654,279,0 chrVIII 351675 . C T 3894.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.62;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3894,397,0 chrVIII 352685 . C T 3357.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0948;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.02;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3357,337,0 chrVIII 356286 . C T 4618.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.66;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4618,466,0 chrVIII 359105 . G A 4590.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4590,463,0 chrVIII 359203 . C T 4366.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.99;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4366,442,0 chrVIII 359491 . C A 2293 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=23.40;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2326,237,0 chrVIII 359637 . A T 2831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.311;QD=26.46;ReadPosRankSum=1.700;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2864,288,0 chrVIII 360236 . C T 3428.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3428,346,0 chrVIII 360543 . G A 1534 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=10.1150;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.61;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1567,159,0 chrVIII 361205 . A G 3622.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=23.37;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3622,370,0 chrVIII 361212 . C T 3170 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.72;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3203,348,0 chrVIII 361272 . G T 2424 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=18.94;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2457,261,0 chrVIII 362833 . C T 2864 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2897,292,0 chrVIII 362889 . T C 3638.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4367;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=24.92;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3638,370,0 chrVIII 363516 . C T 7066.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:7066,709,0 chrVIII 365358 . A G 5787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=237;Dels=0.00;FS=8.641;HaplotypeScore=11.6820;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.089;QD=24.42;ReadPosRankSum=1.717;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,233:237:99:5787,628,0 chrVIII 366775 . T C 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.229;QD=24.35;ReadPosRankSum=1.673;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2882,297,0 chrVIII 367199 . T C 3947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.474;QD=25.14;ReadPosRankSum=1.688;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3947,403,0 chrVIII 370997 . C A 4377.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4377,436,0 chrVIII 372172 . G A 5589.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.6977;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.41;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5589,559,0 chrVIII 372393 . A T 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.0919;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.709;QD=25.01;ReadPosRankSum=0.304;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3701,370,0 chrVIII 372705 . C A 4927.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=19.3881;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.93;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4927,499,0 chrVIII 376014 . T C 3289.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.22;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3289,345,0 chrVIII 377086 . G C 2705 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.05;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2738,282,0 chrVIII 378303 . C A 5299.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.1083;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=28.19;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5299,532,0 chrVIII 378420 . A G 6209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=261;Dels=0.00;FS=5.656;HaplotypeScore=11.8297;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.671;QD=23.79;ReadPosRankSum=2.965;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:3,256:261:99:6209,649,0 chrVIII 379205 . C T 5225.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.8810;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:5225,523,0 chrVIII 379248 . T C 4596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=197;Dels=0.00;FS=7.881;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.132;QD=23.33;ReadPosRankSum=2.412;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:2,193:197:99:4596,478,0 chrVIII 380512 . T C 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=2.576;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.942;QD=26.37;ReadPosRankSum=2.368;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3956,415,0 chrVIII 380673 . A G 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-1.137;QD=20.50;ReadPosRankSum=1.706;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2780,291,0 chrVIII 380685 . A G 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=147;Dels=0.00;FS=2.612;HaplotypeScore=6.9407;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.426;QD=19.97;ReadPosRankSum=2.349;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2969,306,0 chrVIII 381183 . G T 2204 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=14.31;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2237,231,0 chrVIII 381497 . T C 1404 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;QD=18.23;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1437,150,0 chrVIII 381507 . C T 1342 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=17.43;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1375,144,0 chrVIII 381514 . C G 1333 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;QD=18.01;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1366,144,0 chrVIII 381521 . T A 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=77;Dels=0.00;FS=8.278;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;MQRankSum=-0.817;QD=16.42;ReadPosRankSum=2.386;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1297,132,0 chrVIII 381527 . T A 1326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=8.042;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;MQRankSum=-1.402;QD=16.57;ReadPosRankSum=2.388;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1359,138,0 chrVIII 381677 . G A 1722 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=25.32;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1755,180,0 chrVIII 381772 . A T 867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-1.641;QD=22.82;ReadPosRankSum=1.550;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:90:900,90,0 chrVIII 381790 . T C 1018 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=24.24;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1051,111,0 chrVIII 382504 . A T 1960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.751;DP=101;Dels=0.00;FS=9.564;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;MQRankSum=-1.030;QD=19.41;ReadPosRankSum=2.911;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:3,98:101:99:1993,210,0 chrVIII 382524 . A C 1856 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;QD=17.35;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1889,201,0 chrVIII 382544 . A G 1493 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=0;QD=13.57;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1526,174,0 chrVIII 382545 . G A 1572 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=0;QD=14.56;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1605,177,0 chrVIII 382565 . A G 1605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.729;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.94;MQ0=0;MQRankSum=-1.497;QD=13.60;ReadPosRankSum=1.703;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1638,168,0 chrVIII 382601 . G A 1503 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.17;MQ0=0;QD=13.54;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1536,156,0 chrVIII 382602 . T A 1466 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.17;MQ0=0;QD=13.21;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1499,153,0 chrVIII 382626 . C T 1406 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.95;MQ0=0;QD=13.39;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1439,144,0 chrVIII 382650 . G T 55.97 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=95.0171;MLEAC=2;MLEAF=1.00;MQ=38.07;MQ0=0;QD=0.57;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:9:88,9,0 chrVIII 382788 . T C 5871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;MQRankSum=0.384;QD=26.45;ReadPosRankSum=1.716;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:5871,607,0 chrVIII 382813 . C T 5283.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=0;QD=24.92;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5283,544,0 chrVIII 382878 . T C 5363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=220;Dels=0.00;FS=2.682;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;MQRankSum=-0.667;QD=24.38;ReadPosRankSum=2.427;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:2,217:220:99:5363,553,0 chrVIII 382967 . G A 4211.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=20.85;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4211,438,0 chrVIII 383029 . A G 3193 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=35.49;MQ0=0;MQRankSum=-2.003;QD=19.23;ReadPosRankSum=2.420;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3226,348,0 chrVIII 383035 . G A 3130 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.90;MQ0=0;QD=19.20;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3163,330,0 chrVIII 383037 . C T 3062 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=33.70;MQ0=0;QD=19.02;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3095,324,0 chrVIII 383055 . C A 2723 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=16.91;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2756,288,0 chrVIII 383077 . T A 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=183;Dels=0.01;FS=10.942;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;MQRankSum=-1.167;QD=16.68;ReadPosRankSum=2.342;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3085,321,0 chrVIII 383114 . A C 3513.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=17.57;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3513,364,0 chrVIII 383160 . G A 2903 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.01;FS=0.000;HaplotypeScore=32.1977;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=16.49;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2936,297,0 chrVIII 383194 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=12.27;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1591,168,0 chrVIII 383199 . C T 1355 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=10.93;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1388,147,0 chrVIII 383205 . G A 1312 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.49;MQ0=0;QD=11.41;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1345,147,0 chrVIII 383206 . C T 1328 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;QD=11.45;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1361,147,0 chrVIII 383265 . A G 1476 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;QD=13.67;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1509,186,0 chrVIII 383266 . G T 1481 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=13.46;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1514,186,0 chrVIII 383316 . A C 3035 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=23.17;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3068,324,0 chrVIII 383636 . A T 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=125;Dels=0.00;FS=11.667;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.502;QD=24.72;ReadPosRankSum=2.312;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:2,123:125:99:3123,319,0 chrVIII 383825 . T C 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=3.936;HaplotypeScore=7.4304;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-0.195;QD=21.15;ReadPosRankSum=1.686;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3226,348,0 chrVIII 383847 . C T 3322.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.7364;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.77;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3322,340,0 chrVIII 383960 . T C 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=107;Dels=0.00;FS=3.263;HaplotypeScore=13.9989;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.732;QD=24.32;ReadPosRankSum=1.699;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2635,279,0 chrVIII 384317 . T C 3146 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3179,325,0 chrVIII 384503 . C T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.28;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3424,346,0 chrVIII 384582 . G C 3472.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.98;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3472,366,0 chrVIII 384736 . T C 3514.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.40;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3514,358,0 chrVIII 384823 . C T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.65;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3451,346,0 chrVIII 384865 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.98;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2584,258,0 chrVIII 384997 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=25.98;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3377,340,0 chrVIII 385006 . G A 2927 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=24.81;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2960,300,0 chrVIII 385054 . C T 2606 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=13.6793;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.27;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2639,276,0 chrVIII 385186 . C T 2264 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.34;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2297,228,0 chrVIII 385620 . T C 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.9255;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.479;QD=24.97;ReadPosRankSum=1.708;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3521,364,0 chrVIII 386000 . C T 6242.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=12.1126;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=21.90;SB=-3.827e+03 GT:AD:DP:GQ:PL 1/1:0,284:285:99:6242,628,0 chrVIII 386016 . C T 5703.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=19.01;SB=-3.938e+03 GT:AD:DP:GQ:PL 1/1:0,298:300:99:5703,580,0 chrVIII 386061 . T C 3644.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=400;Dels=0.00;FS=5.896;HaplotypeScore=12.1196;MLEAC=2;MLEAF=1.00;MQ=34.13;MQ0=0;MQRankSum=-0.610;QD=9.11;ReadPosRankSum=2.982;SB=-4.946e+03 GT:AD:DP:GQ:PL 1/1:3,395:400:99:3644,378,0 chrVIII 386073 . A C 1336.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.261;DP=393;Dels=0.00;FS=12.412;HaplotypeScore=6.7714;MLEAC=1;MLEAF=0.500;MQ=30.76;MQ0=0;MQRankSum=-1.902;QD=3.40;ReadPosRankSum=-13.976;SB=-9.430e+02 GT:AD:DP:GQ:PL 0/1:252,141:393:99:1366,0,1069 chrVIII 386144 . C A 4462.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=8.1117;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;QD=16.23;SB=-3.265e+03 GT:AD:DP:GQ:PL 1/1:0,273:275:99:4462,454,0 chrVIII 386883 . A T 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.336;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=0.161;QD=26.38;ReadPosRankSum=1.696;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2592,264,0 chrVIII 386919 . A C 1492 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.68;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1525,165,0 chrVIII 387076 . T G 813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.205;DP=48;Dels=0.00;FS=8.846;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-1.281;QD=16.94;ReadPosRankSum=1.657;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:1,46:48:87:846,87,0 chrVIII 387077 . T A 795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=48;Dels=0.00;FS=8.270;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-0.627;QD=16.56;ReadPosRankSum=1.290;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:87:828,87,0 chrVIII 387439 . T C 2250 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.73;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2283,237,0 chrVIII 387620 . G A 686 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.60;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:72:719,72,0 chrVIII 387749 . A G 885 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.08;MQ0=0;QD=18.44;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:96:918,96,0 chrVIII 387771 . G A 775 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.92;MQ0=0;QD=12.50;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:84:808,84,0 chrVIII 387777 . G A 819 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.77;MQ0=0;QD=13.21;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:84:852,84,0 chrVIII 387780 . C T 763 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=12.93;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:81:796,81,0 chrVIII 387797 . C T 904 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.12;MQ0=0;QD=10.89;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:96:937,96,0 chrVIII 387812 . T C 1546 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;QD=14.05;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1579,168,0 chrVIII 387848 . A G 2329 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=18.48;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2362,252,0 chrVIII 388103 . T C 5811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.694;DP=260;Dels=0.00;FS=9.973;HaplotypeScore=19.5423;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-1.322;QD=22.35;ReadPosRankSum=1.508;SB=-3.035e+03 GT:AD:DP:GQ:PL 1/1:3,256:260:99:5811,581,0 chrVIII 388130 . G A 5598.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.13;SB=-3.051e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5598,562,0 chrVIII 388214 . G C 5575.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=10.6707;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.28;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:5575,601,0 chrVIII 388271 . C T 4721.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=25.0883;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.46;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:4721,472,0 chrVIII 388280 . A G 4074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=200;Dels=0.00;FS=2.518;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=1.107;QD=20.37;ReadPosRankSum=2.924;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:3,195:200:99:4074,433,0 chrVIII 388478 . T C 3011 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.52;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3044,324,0 chrVIII 388520 . A G 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=1.342;QD=23.35;ReadPosRankSum=1.708;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3316,351,0 chrVIII 388553 . T C 3111 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.38;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3144,333,0 chrVIII 388619 . C A 4172.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.8319;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.41;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4172,418,0 chrVIII 388664 . A G 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=147;Dels=0.00;FS=13.024;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.660;QD=24.37;ReadPosRankSum=2.868;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:3,142:147:99:3583,390,0 chrVIII 388791 . C A 3498.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=23.48;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3498,361,0 chrVIII 388830 . C T 3093 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.1816;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=23.08;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3126,327,0 chrVIII 388948 . G T 1499 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.029;DP=69;Dels=0.00;FS=13.291;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=4;MQRankSum=1.570;QD=21.72;ReadPosRankSum=-0.866;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:5,63:69:99:1532,135,0 chrVIII 388949 . G T 1502 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.245;DP=68;Dels=0.00;FS=13.291;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=4;MQRankSum=1.570;QD=22.09;ReadPosRankSum=-0.866;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:5,63:68:99:1535,135,0 chrVIII 389016 . A T 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.11;MQ0=0;MQRankSum=-1.231;QD=5.55;ReadPosRankSum=1.231;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:2,3:5:6:59,6,0 chrVIII 389017 . A G 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=0;QD=8.92;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:58,6,0 chrVIII 389023 . A G 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=0;QD=5.95;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:49,6,0 chrVIII 389050 . A G 143.13 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;QD=20.45;SB=-5.688e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:18:176,18,0 chrVIII 389052 . G A 144.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=18.02;SB=-5.788e+01 GT:AD:DP:GQ:PL 1/1:0,7:8:18:177,18,0 chrVIII 389177 . T A 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482;DP=17;Dels=0.00;FS=19.445;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.80;MQ0=1;MQRankSum=2.329;QD=1.01;ReadPosRankSum=-2.964;SB=1.18 GT:AD:DP:GQ:PL 0/1:10,7:17:47:47,0,118 chrVIII 389252 . G A 184.03 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=13;QD=7.67;SB=-1.109e+02 GT:AD:DP:GQ:PL 1/1:12,12:24:24:217,24,0 chrVIII 389537 . T C 1044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.60;MQ0=0;MQRankSum=-0.818;QD=11.47;ReadPosRankSum=1.694;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1077,114,0 chrVIII 389626 . T C 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;MQRankSum=-1.310;QD=25.61;ReadPosRankSum=1.648;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:2133,222,0 chrVIII 389801 . A G 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.024;DP=128;Dels=0.00;FS=11.888;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.732;QD=23.78;ReadPosRankSum=1.717;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:3077,312,0 chrVIII 389898 . T A 1585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=86;Dels=0.00;FS=6.279;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=-0.215;QD=18.43;ReadPosRankSum=2.393;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1618,162,0 chrVIII 389909 . A G 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=86;Dels=0.00;FS=10.153;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;MQRankSum=-1.177;QD=17.57;ReadPosRankSum=2.918;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1544,159,0 chrVIII 389922 . C T 1519 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=17.26;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1552,156,0 chrVIII 389953 . C T 2212 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.29;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2245,222,0 chrVIII 390041 . A T 2456 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.33;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2489,261,0 chrVIII 390172 . C T 2616 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.91;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2649,267,0 chrVIII 390446 . G A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.46;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4109,441,0 chrVIII 390561 . T C 4327.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.59;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4327,448,0 chrVIII 390630 . C T 4224.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=25.76;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4224,421,0 chrVIII 390647 . G A 4094.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=24.66;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4094,418,0 chrVIII 390900 . C T 3576.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3930;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=26.29;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3576,361,0 chrVIII 391205 . T A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.22;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3318,337,0 chrVIII 391307 . G A 3900.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.35;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3900,391,0 chrVIII 391334 . A G 3339.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.87;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3339,343,0 chrVIII 391559 . G A 1610 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.05;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1643,165,0 chrVIII 391599 . C T 1340 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.33;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1373,141,0 chrVIII 391739 . A G 455 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=15.17;SB=-6.552e-03 GT:AD:DP:GQ:PL 1/1:0,28:30:54:488,54,0 chrVIII 391940 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.720;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;MQRankSum=0.720;QD=2.65;ReadPosRankSum=0.000;SB=1.24 GT:AD:DP:GQ:PL 1/1:2,4:6:6:47,6,0 chrVIII 391951 . A G 27.77 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.495;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=1.495;QD=3.97;ReadPosRankSum=0.198;SB=1.24 GT:AD:DP:GQ:PL 1/1:2,5:7:6:59,6,0 chrVIII 391962 . G A 80.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.322;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=6.0357;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;MQRankSum=2.041;QD=6.19;ReadPosRankSum=-0.537;SB=2.50 GT:AD:DP:GQ:PL 1/1:2,10:13:12:113,12,0 chrVIII 392043 . T C 2036 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.79;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2069,219,0 chrVIII 392078 . G C 1381 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=25.57;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1414,144,0 chrVIII 392401 . C T 1569 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1602,162,0 chrVIII 392524 . C T 1239 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.31;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1272,132,0 chrVIII 392676 . T C 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.9767;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.652;QD=26.63;ReadPosRankSum=1.679;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3462,361,0 chrVIII 393017 . C T 3473.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.79;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3473,346,0 chrVIII 393074 . A G 3751.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.04;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3751,394,0 chrVIII 393351 . G A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.5789;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=23.01;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3520,352,0 chrVIII 393364 . T C 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.688;DP=146;Dels=0.00;FS=6.006;HaplotypeScore=12.1563;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-1.090;QD=20.55;ReadPosRankSum=2.952;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:3,142:146:99:3034,315,0 chrVIII 393466 . A T 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.4642;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.976;QD=23.00;ReadPosRankSum=1.692;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4002,412,0 chrVIII 393530 . A G 4301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.333;DP=194;Dels=0.00;FS=14.842;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.737;QD=22.17;ReadPosRankSum=3.415;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:4,189:194:99:4301,459,0 chrVIII 393725 . A G 3717.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.88;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:3717,396,0 chrVIII 393734 . T C 3850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=194;Dels=0.00;FS=7.152;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=-1.292;QD=19.85;ReadPosRankSum=2.399;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:3850,408,0 chrVIII 394179 . A G 2181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=0.666;QD=22.26;ReadPosRankSum=2.374;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2214,231,0 chrVIII 394302 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.02;FS=0.000;HaplotypeScore=12.3478;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.23;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2031,204,0 chrVIII 394728 . A G 5864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=231;Dels=0.00;FS=3.724;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.907;QD=25.39;ReadPosRankSum=1.717;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5864,598,0 chrVIII 394959 . G A 6158.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=15.0268;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=25.55;SB=-3.030e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:6158,619,0 chrVIII 395132 . G A 5401.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=12.7488;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=23.08;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5401,541,0 chrVIII 395164 . T C 4995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=235;Dels=0.00;FS=3.339;HaplotypeScore=414.3819;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=0.305;QD=21.26;ReadPosRankSum=1.702;SB=-2.996e+03 GT:AD:DP:GQ:PL 1/1:1,232:235:99:4995,529,0 chrVIII 395246 . G C 5385.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.83;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5385,556,0 chrVIII 395277 . A G 5128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=220;Dels=0.00;FS=3.019;HaplotypeScore=11.5950;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.746;QD=23.31;ReadPosRankSum=2.405;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:2,217:220:99:5128,547,0 chrVIII 395310 . C A 4083.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0164;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.43;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4083,412,0 chrVIII 395453 . T C 3874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=168;Dels=0.00;FS=7.290;HaplotypeScore=8.8980;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.680;QD=23.06;ReadPosRankSum=2.346;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3874,400,0 chrVIII 395596 . A C 4554.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.23;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4554,481,0 chrVIII 395607 . G A 4674.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.69;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4674,475,0 chrVIII 395667 . A G 4619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=206;Dels=0.00;FS=8.056;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.512;QD=22.42;ReadPosRankSum=2.389;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:2,202:206:99:4619,478,0 chrVIII 396288 . A T 5365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=228;Dels=0.00;FS=6.077;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.013;QD=23.53;ReadPosRankSum=2.934;SB=-3.096e+03 GT:AD:DP:GQ:PL 1/1:3,225:228:99:5365,541,0 chrVIII 396423 . C T 5733.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=5.0164;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.43;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,295:295:99:5733,583,0 chrVIII 396425 . C T 5674.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=4.4338;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=19.57;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,290:290:99:5674,574,0 chrVIII 396474 . T C 4093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=5.8242;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=-1.111;QD=16.31;ReadPosRankSum=1.718;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:4093,427,0 chrVIII 396631 . A G 6137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=20.3944;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-1.218;QD=22.24;ReadPosRankSum=2.423;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,273:276:99:6137,634,0 chrVIII 396784 . C T 2842 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=24.93;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2875,288,0 chrVIII 396997 . A G 1239 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=15.49;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1272,132,0 chrVIII 397001 . A G 1195 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=15.13;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1228,129,0 chrVIII 397005 . G T 1220 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=15.06;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1253,132,0 chrVIII 397402 . G T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.16;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3543,364,0 chrVIII 397787 . A G 4318.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.70;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4318,454,0 chrVIII 397848 . G A 3761.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.41;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3761,379,0 chrVIII 398045 . C T 4504.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4504,451,0 chrVIII 398255 . A T 4513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=176;Dels=0.00;FS=2.835;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.584;QD=25.64;ReadPosRankSum=2.380;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4513,451,0 chrVIII 398452 . T C 2811 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2844,291,0 chrVIII 398618 . C T 2851 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.92;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2884,291,0 chrVIII 398985 . G A 1720 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=20.72;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1753,171,0 chrVIII 399012 . C T 1511 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;QD=21.28;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1544,153,0 chrVIII 399021 . C A 1291 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=18.44;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1324,150,0 chrVIII 399043 . A G 1241 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=19.8239;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;QD=19.09;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1274,135,0 chrVIII 399074 . T A 55.97 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=40.5933;MLEAC=2;MLEAF=1.00;MQ=30.60;MQ0=0;QD=1.93;SB=-7.798e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:9:88,9,0 chrVIII 399087 . G A 58.97 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.16;MQ0=0;QD=2.18;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:9:91,9,0 chrVIII 399099 . T A 169.06 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.10;MQ0=0;QD=6.76;SB=-1.861e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:21:202,21,0 chrVIII 399104 . C T 160.06 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;QD=6.96;SB=-1.731e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:21:193,21,0 chrVIII 399258 . A G 1353 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.74;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1386,144,0 chrVIII 399316 . T C 2094 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.93;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2127,222,0 chrVIII 399409 . A G 2536 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.85;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2569,267,0 chrVIII 399427 . G A 2483 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.42;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2516,252,0 chrVIII 399484 . T G 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.4082;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.773;QD=21.97;ReadPosRankSum=1.626;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2889,309,0 chrVIII 399595 . A T 4073.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.10;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4073,412,0 chrVIII 399862 . A G 5413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.354;QD=23.33;ReadPosRankSum=1.717;SB=-2.968e+03 GT:AD:DP:GQ:PL 1/1:1,228:232:99:5413,571,0 chrVIII 399901 . T C 5574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=238;Dels=0.00;FS=3.723;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.437;QD=23.42;ReadPosRankSum=1.718;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:1,237:238:99:5574,586,0 chrVIII 400069 . A G 4610.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4610,481,0 chrVIII 400443 . G C 3524.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.5813;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.49;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3524,361,0 chrVIII 400451 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.0277;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=23.78;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3377,337,0 chrVIII 400618 . C T 6304.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=8.0546;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=25.12;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,248:251:99:6304,649,0 chrVIII 400642 . A T 6661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=267;Dels=0.00;FS=10.841;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.345;QD=24.95;ReadPosRankSum=2.385;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:2,265:267:99:6661,694,0 chrVIII 401408 . C T 4533.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4533,472,0 chrVIII 401484 . G A 5829.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5829,586,0 chrVIII 402478 . T C 2575 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0722;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2608,270,0 chrVIII 402726 . T C 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.182;QD=24.78;ReadPosRankSum=1.709;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3767,391,0 chrVIII 402916 . G A 3964.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.5947;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=23.46;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3964,400,0 chrVIII 402933 . C T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=21.41;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3726,385,0 chrVIII 402986 . T C 2546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=141;Dels=0.00;FS=7.176;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=-1.090;QD=18.06;ReadPosRankSum=2.397;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2579,273,0 chrVIII 402990 . C A 2405 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=17.95;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2438,246,0 chrVIII 403022 . G T 2188 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.07;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2221,228,0 chrVIII 403115 . G C 3497.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.79;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,142:147:99:3497,363,0 chrVIII 403151 . C A 3752.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=26.61;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3752,373,0 chrVIII 403215 . A G 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=118;Dels=0.00;FS=10.820;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=0.513;QD=23.80;ReadPosRankSum=2.872;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2841,291,0 chrVIII 403244 . G C 2701 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.09;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2734,291,0 chrVIII 404452 . C T 3285.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.63;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3285,334,0 chrVIII 404640 . C A 2993 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=22.67;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3026,306,0 chrVIII 404646 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.17;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2828,297,0 chrVIII 404657 . A T 2837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=130;Dels=0.00;FS=3.035;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.520;QD=21.82;ReadPosRankSum=2.412;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2870,283,0 chrVIII 404705 . C G 3035 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.9810;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.51;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3068,321,0 chrVIII 405006 . G A 4193.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4193,424,0 chrVIII 405293 . G T 2968 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.1374;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.99;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3001,312,0 chrVIII 405569 . T A 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=76;Dels=0.00;FS=4.037;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.866;QD=20.55;ReadPosRankSum=1.687;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1595,165,0 chrVIII 405579 . G A 1557 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.62;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1590,159,0 chrVIII 406060 . G A 2481 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.85;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2514,252,0 chrVIII 406077 . A G 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.250;QD=21.67;ReadPosRankSum=2.880;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2395,249,0 chrVIII 406328 . A C 1494 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=25.76;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1527,162,0 chrVIII 406414 . A G 1622 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.06;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1655,171,0 chrVIII 406429 . A G 1964 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.67;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1997,216,0 chrVIII 406474 . A G 2487 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=22.41;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2520,261,0 chrVIII 406498 . T C 2714 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=24.23;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2747,282,0 chrVIII 406524 . C A 2791 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.85;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2824,285,0 chrVIII 406597 . T C 3737.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=24.27;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3737,388,0 chrVIII 406625 . G T 4071.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=24.67;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4071,409,0 chrVIII 406734 . C T 3463.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.74;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3463,349,0 chrVIII 407003 . G A 4151.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.4888;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=25.31;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4151,415,0 chrVIII 407300 . A G 3075 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.21;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3108,318,0 chrVIII 407302 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=21.22;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3088,324,0 chrVIII 407637 . G T 3080 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.65;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3113,316,0 chrVIII 408482 . A G 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.816;QD=20.83;ReadPosRankSum=1.703;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,120:127:99:2679,282,0 chrVIII 408675 . G T 3044 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6810;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3077,312,0 chrVIII 409115 . T C 2867 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.83;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2900,306,0 chrVIII 409404 . C G 3352.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3352,346,0 chrVIII 409526 . T C 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.669;DP=146;Dels=0.00;FS=16.618;HaplotypeScore=5.0667;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.550;QD=23.94;ReadPosRankSum=3.745;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:5,141:146:99:3495,361,0 chrVIII 409664 . A G 3835.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3835,397,0 chrVIII 410129 . T C 2164 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.31;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2197,228,0 chrVIII 410162 . T C 1798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=3.736;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.666;QD=23.05;ReadPosRankSum=1.688;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1831,186,0 chrVIII 410489 . T C 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=168;Dels=0.00;FS=3.280;HaplotypeScore=8.2946;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.210;QD=25.82;ReadPosRankSum=1.711;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:4338,457,0 chrVIII 410842 . T C 2249 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3919;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.62;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2282,240,0 chrVIII 411599 . T A 2149 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2182,219,0 chrVIII 411647 . C T 2317 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.8482;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2350,234,0 chrVIII 412143 . C A 3089 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.1228;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.05;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3122,324,0 chrVIII 412170 . G A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.50;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3408,351,0 chrVIII 412427 . G A 4214.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.22;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4214,421,0 chrVIII 413175 . G A 5036.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.37;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:5036,499,0 chrVIII 413239 . T C 5138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=210;Dels=0.00;FS=3.025;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.298;QD=24.47;ReadPosRankSum=2.414;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:5138,538,0 chrVIII 413311 . C T 5009.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5009,493,0 chrVIII 413370 . C T 2691 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.40;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2724,271,0 chrVIII 413704 . G T 1730 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.21;SB=-6.801e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1763,180,0 chrVIII 414234 . C T 3936.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.4450;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.71;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3936,411,0 chrVIII 415310 . T C 4898.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.9145;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4898,502,0 chrVIII 415575 . T C 4570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=186;Dels=0.00;FS=2.869;HaplotypeScore=14.4317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.048;QD=24.57;ReadPosRankSum=2.423;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:2,182:186:99:4570,475,0 chrVIII 417054 . G A 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=135;Dels=0.00;FS=3.595;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.552;QD=21.56;ReadPosRankSum=-0.757;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2944,309,0 chrVIII 419744 . T G 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=124;Dels=0.00;FS=3.305;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.369;QD=23.48;ReadPosRankSum=1.704;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2944,303,0 chrVIII 420248 . A T 3134 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=25.07;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3167,316,0 chrVIII 420265 . C T 3292.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.7740;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.94;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3292,342,0 chrVIII 420343 . A G 4503.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=26.03;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4503,480,0 chrVIII 422992 . A G 2941 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.71;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2974,309,0 chrVIII 423420 . G A 2114 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2147,216,0 chrVIII 424323 . G C 4721.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.6383;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.62;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:4721,507,0 chrVIII 424597 . C A 186.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.202;DP=170;Dels=0.00;FS=1.395;HaplotypeScore=299.4402;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=1.169;QD=1.09;ReadPosRankSum=5.242;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:10,160:170:1:215,1,0 chrVIII 424752 . T A 5139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=222;Dels=0.00;FS=3.358;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.008;QD=23.15;ReadPosRankSum=1.701;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:5139,538,0 chrVIII 424817 . G A 5100.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.5162;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.61;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5100,520,0 chrVIII 425219 . G A 3439.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.63;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3439,352,0 chrVIII 425300 . G T 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.316;QD=16.81;ReadPosRankSum=0.967;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3093,304,0 chrVIII 425301 . C T 2971 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=16.32;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3004,303,0 chrVIII 425312 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=16.62;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3025,304,0 chrVIII 425823 . T C 4366.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.67;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4366,451,0 chrVIII 426069 . T A 4080.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.1793;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.19;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4080,412,0 chrVIII 426306 . C T 3524.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3524,355,0 chrVIII 426350 . G A 3193 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3226,348,0 chrVIII 426665 . A G 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.701;QD=20.10;ReadPosRankSum=1.674;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:3638,376,0 chrVIII 426716 . A G 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=170;Dels=0.00;FS=6.985;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.390;QD=23.48;ReadPosRankSum=2.405;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:2,165:170:99:3991,423,0 chrVIII 427277 . A G 2277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=98;Dels=0.00;FS=3.048;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.917;QD=23.23;ReadPosRankSum=2.400;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2310,240,0 chrVIII 427565 . A C 2562 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.17;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2595,273,0 chrVIII 427619 . T C 2231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.884;QD=22.54;ReadPosRankSum=1.697;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2264,237,0 chrVIII 427646 . T G 2020 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.96;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2053,210,0 chrVIII 427782 . A G 3999.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3999,409,0 chrVIII 427901 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=27.06;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3436,340,0 chrVIII 428027 . T C 2933 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.2693;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.95;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2966,312,0 chrVIII 428194 . T C 3895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;MQRankSum=-1.522;QD=25.79;ReadPosRankSum=2.401;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3895,403,0 chrVIII 428387 . G A 3843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=220;Dels=0.00;FS=3.111;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;MQRankSum=0.894;QD=17.47;ReadPosRankSum=-0.372;SB=-2.961e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:3843,403,0 chrVIII 428411 . A G 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=231;Dels=0.00;FS=3.183;HaplotypeScore=3.5902;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=-0.562;QD=13.75;ReadPosRankSum=1.717;SB=-2.964e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:3209,333,0 chrVIII 428428 . T C 2221 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.397;DP=196;Dels=0.00;FS=2.063;HaplotypeScore=3.5587;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;MQRankSum=-0.994;QD=11.33;ReadPosRankSum=2.263;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:4,190:196:99:2254,246,0 chrVIII 428429 . C T 2255 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.438;DP=200;Dels=0.00;FS=3.098;HaplotypeScore=1.9814;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;MQRankSum=-0.433;QD=11.27;ReadPosRankSum=-0.727;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:2288,252,0 chrVIII 428431 . C T 2640 SnpCluster AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.9814;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=12.75;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:2673,270,0 chrVIII 428623 . G A 4996.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=24.37;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4996,502,0 chrVIII 428738 . G A 3998.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.68;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3998,400,0 chrVIII 429302 . C T 4216.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.8214;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=24.51;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4216,442,0 chrVIII 429323 . C T 4328.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=23.27;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4328,433,0 chrVIII 429343 . T C 4450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=202;Dels=0.00;FS=11.617;HaplotypeScore=9.8695;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.205;QD=22.03;ReadPosRankSum=2.925;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:3,198:202:99:4450,472,0 chrVIII 429526 . C T 3030 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.67;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3063,307,0 chrVIII 430130 . T C 2704 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.27;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2737,285,0 chrVIII 430583 . T C 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.733;DP=148;Dels=0.00;FS=2.589;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.925;QD=22.28;ReadPosRankSum=2.911;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:3,144:148:99:3297,351,0 chrVIII 430901 . C T 5314.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.6021;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.72;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:5314,535,0 chrVIII 431051 . T A 6234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=249;Dels=0.00;FS=6.432;HaplotypeScore=13.5810;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.907;QD=25.04;ReadPosRankSum=2.361;SB=-3.282e+03 GT:AD:DP:GQ:PL 1/1:2,247:249:99:6234,637,0 chrVIII 431870 . C T 3725.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3725,373,0 chrVIII 431945 . A G 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=163;Dels=0.00;FS=2.606;HaplotypeScore=8.0349;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.100;QD=21.78;ReadPosRankSum=2.419;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3550,361,0 chrVIII 433037 . T C 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=128;Dels=0.00;FS=6.111;HaplotypeScore=13.8548;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;MQRankSum=-0.961;QD=20.81;ReadPosRankSum=2.914;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:2697,288,0 chrVIII 433331 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.17;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3458,346,0 chrVIII 433370 . T G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=3.842;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.458;QD=22.34;ReadPosRankSum=1.710;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3462,360,0 chrVIII 433529 . A T 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=154;Dels=0.00;FS=7.009;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.886;QD=23.78;ReadPosRankSum=2.370;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3662,370,0 chrVIII 433703 . G A 3537.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.56;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3537,366,0 chrVIII 433706 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=19.87;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3536,367,0 chrVIII 434154 . G C 4238.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.08;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4238,439,0 chrVIII 434588 . A G 3056 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.47;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3089,324,0 chrVIII 434957 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.47;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2807,282,0 chrVIII 435305 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.98;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3250,336,0 chrVIII 435329 . T C 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.543;QD=22.53;ReadPosRankSum=1.706;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3052,318,0 chrVIII 435539 . C A 4174.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.55;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4174,418,0 chrVIII 435764 . G A 3607.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.0087;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.27;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3607,367,0 chrVIII 435830 . T C 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=4.735;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.528;QD=23.04;ReadPosRankSum=1.645;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2798,303,0 chrVIII 436433 . A G 3760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=165;Dels=0.00;FS=10.726;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.189;QD=22.79;ReadPosRankSum=2.933;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3760,396,0 chrVIII 436457 . A G 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.609;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.117;QD=23.56;ReadPosRankSum=1.668;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3841,388,0 chrVIII 436613 . T C 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.240;DP=188;Dels=0.00;FS=12.837;HaplotypeScore=10.2129;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.842;QD=21.29;ReadPosRankSum=4.056;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:7,181:188:99:4002,415,0 chrVIII 436638 . T G 4216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.405;DP=192;Dels=0.00;FS=13.228;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=-1.220;QD=21.96;ReadPosRankSum=3.304;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:4,187:192:99:4216,436,0 chrVIII 436654 . A G 4358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.750;QD=21.16;ReadPosRankSum=1.663;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:1,200:206:99:4358,451,0 chrVIII 436695 . G T 4407.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.04;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4407,445,0 chrVIII 436805 . G A 2956 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.90;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2989,303,0 chrVIII 436859 . T C 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.878;HaplotypeScore=8.8841;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.041;QD=22.26;ReadPosRankSum=1.705;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2882,300,0 chrVIII 436939 . G T 2085 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.02;FS=0.000;HaplotypeScore=15.8515;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=16.95;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2118,219,0 chrVIII 436978 . G A 1730 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=11.2314;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=13.62;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1763,177,0 chrVIII 437014 . G T 2447 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.02;FS=0.000;HaplotypeScore=39.2956;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=18.97;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2480,252,0 chrVIII 437680 . G A 5599.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.5053;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=25.11;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5599,562,0 chrVIII 437704 . G A 5376.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.48;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5376,544,0 chrVIII 437974 . A G 4085.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.7819;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.34;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4085,418,0 chrVIII 438040 . A G 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.254;QD=24.35;ReadPosRankSum=2.351;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3652,381,0 chrVIII 438265 . A G 1926 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1959,213,0 chrVIII 438307 . G A 2655 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.09;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2688,270,0 chrVIII 439062 . C T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3434,343,0 chrVIII 439199 . C T 3098 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.78;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3131,316,0 chrVIII 439232 . A G 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=109;Dels=0.00;FS=2.571;HaplotypeScore=9.7136;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.972;QD=23.60;ReadPosRankSum=2.898;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:3,105:109:99:2605,270,0 chrVIII 439617 . G T 2941 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=26.74;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2974,303,0 chrVIII 439647 . G A 2905 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.8397;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=24.83;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2938,300,0 chrVIII 439710 . A G 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=9.123;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=1.176;QD=23.97;ReadPosRankSum=2.419;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3883,397,0 chrVIII 439716 . T G 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=168;Dels=0.00;FS=2.584;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-0.596;QD=21.43;ReadPosRankSum=2.405;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3600,381,0 chrVIII 439725 . A G 3718.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=22.13;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3718,388,0 chrVIII 439766 . A T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.7660;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.81;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3288,342,0 chrVIII 440234 . A G 1566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=72;Dels=0.00;FS=4.594;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.914;QD=21.75;ReadPosRankSum=1.636;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1599,165,0 chrVIII 440297 . C T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=26.54;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3424,343,0 chrVIII 440472 . A T 3212.98 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.53;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3246,342,0 chrVIII 440806 . C T 5550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.2296;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.714;QD=26.30;ReadPosRankSum=-1.486;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:5550,559,0 chrVIII 441044 . G A 5888.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=14.2928;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.27;SB=-2.923e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5888,586,0 chrVIII 441167 . A G 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.872;QD=24.40;ReadPosRankSum=1.709;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3733,379,0 chrVIII 441789 . A T 3421.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.2269;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.34;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3421,346,0 chrVIII 441833 . A G 3576.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.00;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3576,364,0 chrVIII 442149 . T C 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=92.7014;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=1.083;QD=22.30;ReadPosRankSum=1.696;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2196,225,0 chrVIII 444367 . A G 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.708;DP=153;Dels=0.00;FS=11.732;HaplotypeScore=12.0373;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.992;QD=25.62;ReadPosRankSum=3.688;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:5,147:153:99:3920,400,0 chrVIII 445169 . T C 5542.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.8676;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.66;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5542,571,0 chrVIII 445735 . G A 2778 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.25;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2811,282,0 chrVIII 445905 . A C 2985 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.47;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3018,312,0 chrVIII 447896 . G T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=17.5389;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3507,352,0 chrVIII 448924 . T G 3306.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.43;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3306,348,0 chrVIII 448997 . G A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3503,352,0 chrVIII 449277 . A G 4913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.675;DP=201;Dels=0.00;FS=18.550;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.052;QD=24.44;ReadPosRankSum=3.810;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:5,192:201:99:4913,520,0 chrVIII 449402 . T G 3894.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.25;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3894,417,0 chrVIII 450770 . A G 4258.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.20;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4258,448,0 chrVIII 450940 . C T 4125.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.71;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4125,427,0 chrVIII 451071 . C T 2290 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.60;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2323,237,0 chrVIII 451268 . T C 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.104;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.845;QD=21.96;ReadPosRankSum=2.407;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2536,267,0 chrVIII 453447 . T C 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=5.268;HaplotypeScore=6.9865;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.241;QD=17.70;ReadPosRankSum=1.662;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2653,282,0 chrVIII 455744 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.95;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3267,331,0 chrVIII 455783 . T C 3745.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.70;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3745,390,0 chrVIII 455862 . A G 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=14.8190;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.170;QD=18.37;ReadPosRankSum=2.230;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2311,240,0 chrVIII 456019 . G C 2032 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.2830;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.09;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2065,213,0 chrVIII 456475 . C T 4569.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.8499;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.67;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4569,454,0 chrVIII 456989 . C G 3018 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:3051,312,0 chrVIII 457580 . C T 6234.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=16.2604;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-3.536e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:6234,622,0 chrVIII 459310 . C G 4920.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.48;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4920,529,0 chrVIII 460285 . T C 4474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=212;Dels=0.00;FS=4.073;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.915;QD=21.10;ReadPosRankSum=1.699;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4474,475,0 chrVIII 460316 . T C 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=189;Dels=0.00;FS=3.081;HaplotypeScore=13.4238;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.470;QD=21.48;ReadPosRankSum=1.657;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:1,184:189:99:4059,444,0 chrVIII 462825 . T G 4281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=174;Dels=0.00;FS=2.879;HaplotypeScore=13.6663;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=2.222;QD=24.60;ReadPosRankSum=2.364;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:4281,442,0 chrVIII 463432 . A G 4219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=186;Dels=0.00;FS=2.713;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.033;QD=22.68;ReadPosRankSum=2.410;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4219,450,0 chrVIII 463786 . G A 553 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.33;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:60:586,60,0 chrVIII 464525 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.32;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3001,301,0 chrVIII 464855 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.63;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1711,177,0 chrVIII 465579 . T C 3100 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.95;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3133,327,0 chrVIII 465638 . T C 1943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=107;Dels=0.00;FS=17.202;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.907;QD=18.16;ReadPosRankSum=1.699;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,104:107:99:1976,213,0 chrVIII 465684 . G A 2040 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.9957;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.00;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2073,213,0 chrVIII 465708 . T A 2214 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.95;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2247,225,0 chrVIII 465742 . C T 2008 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2041,222,0 chrVIII 465769 . C T 1272 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1305,147,0 chrVIII 465841 . T C 162.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;MQRankSum=-0.980;QD=7.05;ReadPosRankSum=1.583;SB=-7.496e-02 GT:AD:DP:GQ:PL 1/1:1,22:23:21:195,21,0 chrVIII 465846 . A T 233.01 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=5.68;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,41:41:27:266,27,0 chrVIII 465996 . C T 2861 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=18.70;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2894,295,0 chrVIII 466004 . C A 3093 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=18.63;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3126,318,0 chrVIII 466032 . T C 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;MQRankSum=-0.378;QD=16.86;ReadPosRankSum=1.712;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:1,173:174:99:2966,309,0 chrVIII 466045 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.2429;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=15.67;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,179:179:99:2838,288,0 chrVIII 466048 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.1827;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=16.80;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3006,306,0 chrVIII 466143 . A C 5994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=231;Dels=0.00;FS=3.183;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;MQRankSum=-1.552;QD=25.95;ReadPosRankSum=1.687;SB=-3.145e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5994,622,0 chrVIII 466240 . T G 5265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=224;Dels=0.00;FS=5.682;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;MQRankSum=0.296;QD=23.50;ReadPosRankSum=1.701;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:1,221:224:99:5265,547,0 chrVIII 466269 . T A 4747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=206;Dels=0.00;FS=5.077;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;MQRankSum=-0.370;QD=23.04;ReadPosRankSum=1.682;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4747,481,0 chrVIII 466305 . A T 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.746;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.0037;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=0;MQRankSum=-2.355;QD=18.04;ReadPosRankSum=1.195;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:3100,330,0 chrVIII 466324 . A G 2806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.21;MQ0=0;MQRankSum=0.643;QD=17.65;ReadPosRankSum=1.710;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2839,297,0 chrVIII 466334 . A G 2718 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.06;MQ0=0;QD=16.37;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2751,291,0 chrVIII 466339 . C T 2803 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.31;MQ0=0;QD=16.89;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2836,288,0 chrVIII 466361 . A G 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.364;DP=165;Dels=0.00;FS=5.262;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.14;MQ0=0;MQRankSum=-1.213;QD=16.63;ReadPosRankSum=3.406;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:4,161:165:99:2777,294,0 chrVIII 466379 . G C 2359 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=16.97;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2392,255,0 chrVIII 466381 . A C 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;MQRankSum=0.504;QD=16.51;ReadPosRankSum=1.683;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2378,255,0 chrVIII 466403 . T C 2299 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;QD=18.84;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2332,243,0 chrVIII 466472 . T G 1744 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=72.2660;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;QD=17.62;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1777,183,0 chrVIII 466475 . A G 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=70.0545;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;MQRankSum=-0.866;QD=17.30;ReadPosRankSum=1.628;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1763,189,0 chrVIII 466485 . A C 1494 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=84.4893;MLEAC=2;MLEAF=1.00;MQ=40.07;MQ0=0;QD=15.73;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1527,168,0 chrVIII 466650 . C A 2001 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;QD=22.48;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2034,213,0 chrVIII 466657 . G A 1824 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=21.71;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1857,195,0 chrVIII 466663 . G C 1684 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=0;QD=20.29;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1717,186,0 chrVIII 466717 . C G 686 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=34.54;MQ0=0;QD=10.39;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,63:66:78:719,78,0 chrVIII 466727 . C T 914 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;QD=12.52;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:947,102,0 chrVIII 466785 . C T 2505 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=22.37;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2538,261,0 chrVIII 466818 . G A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.85;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3336,351,0 chrVIII 466868 . C T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.2904;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=22.45;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3323,339,0 chrVIII 466878 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=23.33;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3500,366,0 chrVIII 466929 . G A 1982 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=18.35;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2015,210,0 chrVIII 466959 . T C 1844 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=70.1582;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=19.62;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1877,198,0 chrVIII 466968 . A G 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=96;Dels=0.00;FS=3.008;HaplotypeScore=85.0693;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;MQRankSum=0.885;QD=18.81;ReadPosRankSum=2.219;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1839,192,0 chrVIII 468037 . T C 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.135;QD=25.55;ReadPosRankSum=1.692;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2256,234,0 chrVIII 468936 . T C 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.706;QD=25.77;ReadPosRankSum=1.706;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,134:138:99:3556,364,0 chrVIII 469661 . A G 2770 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.7768;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2803,288,0 chrVIII 472755 . T C 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.135;QD=25.07;ReadPosRankSum=2.401;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2540,267,0 chrVIII 473884 . A G 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=149;Dels=0.00;FS=3.348;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.907;QD=25.78;ReadPosRankSum=1.709;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3841,400,0 chrVIII 474210 . T C 3529.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3529,367,0 chrVIII 475005 . T C 4182.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4728;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.75;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4182,430,0 chrVIII 475895 . G A 616 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.11;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:75:649,75,0 chrVIII 482776 . A G 6824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=280;Dels=0.00;FS=3.137;HaplotypeScore=22.5795;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.287;QD=24.37;ReadPosRankSum=1.695;SB=-3.623e+03 GT:AD:DP:GQ:PL 1/1:1,277:280:99:6824,706,0 chrVIII 482896 . C G 7551.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=15.8589;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.77;SB=-3.385e+03 GT:AD:DP:GQ:PL 1/1:0,291:293:99:7551,775,0 chrVIII 483007 . T C 6757.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=11.1701;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.75;SB=-3.797e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:6757,685,0 chrVIII 483130 . A G 6880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=289;Dels=0.00;FS=2.847;HaplotypeScore=16.7669;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.692;QD=23.81;ReadPosRankSum=2.416;SB=-3.149e+03 GT:AD:DP:GQ:PL 1/1:2,287:289:99:6880,709,0 chrVIII 483190 . C T 4913.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.81;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4913,493,0 chrVIII 483220 . C T 4167.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.3498;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.28;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4167,447,0 chrVIII 483295 . A G 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=16.2580;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.265;QD=20.35;ReadPosRankSum=1.712;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3460,355,0 chrVIII 483396 . A C 4341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=16.5787;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.700;QD=22.73;ReadPosRankSum=1.842;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4341,451,0 chrVIII 483796 . T C 6456.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=22.0131;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:0,304:306:99:6456,673,0 chrVIII 483978 . A G 6401.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=14.2997;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.62;SB=-3.023e+03 GT:AD:DP:GQ:PL 1/1:0,257:260:99:6401,664,0 chrVIII 484584 . C G 6652.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=22.5388;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.10;SB=-3.191e+03 GT:AD:DP:GQ:PL 1/1:0,286:288:99:6652,685,0 chrVIII 485700 . G A 5241.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.5821;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.82;SB=-2.959e+03 GT:AD:DP:GQ:PL 1/1:0,216:220:99:5241,532,0 chrVIII 487308 . A G 5590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=21.1070;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.645;QD=23.20;ReadPosRankSum=1.703;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:1,238:241:99:5590,583,0 chrVIII 489755 . C T 6752.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=13.7459;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.19;SB=-3.666e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6752,673,0 chrVIII 493485 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.68;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2704,270,0 chrVIII 493985 . A G 2276 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.01;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2309,243,0 chrVIII 494251 . C T 4586.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4586,460,0 chrVIII 494766 . G A 2896 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2929,295,0 chrVIII 494980 . A G 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.966;QD=21.42;ReadPosRankSum=1.640;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2475,261,0 chrVIII 497084 . G T 5905.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=15.0087;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.36;SB=-3.164e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5905,595,0 chrVIII 497507 . G C 3939.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3939,409,0 chrVIII 501770 . C T 3094 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3127,330,0 chrVIII 501912 . A G 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.994;HaplotypeScore=5.7015;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.487;QD=25.19;ReadPosRankSum=1.664;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3905,400,0 chrVIII 502447 . G A 3672.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.15;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3672,367,0 chrVIII 502641 . G A 3415.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=15.6914;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.72;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3415,351,0 chrVIII 504578 . A G 2490.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.967;DP=325;Dels=0.00;FS=21.844;HaplotypeScore=13.3761;MLEAC=1;MLEAF=0.500;MQ=45.40;MQ0=23;MQRankSum=-12.009;QD=7.66;ReadPosRankSum=0.661;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:177,144:325:99:2520,0,4194 chrVIII 504641 . C T 1305.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.914;DP=325;Dels=0.00;FS=53.498;HaplotypeScore=19.0137;MLEAC=1;MLEAF=0.500;MQ=48.42;MQ0=32;MQRankSum=-12.910;QD=4.02;ReadPosRankSum=0.061;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:211,114:325:99:1335,0,4850 chrVIII 505052 . G A 127.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;DP=520;Dels=0.00;FS=124.310;HaplotypeScore=24.9715;MLEAC=1;MLEAF=0.500;MQ=52.59;MQ0=57;MQRankSum=-12.529;QD=0.24;ReadPosRankSum=-5.446;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:389,129:520:99:157,0,7984 chrVIII 505427 . T G 3078 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.7493;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.24;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3111,324,0 chrVIII 505979 . C T 5917.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.9686;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.07;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5917,601,0 chrVIII 509257 . T C 3146 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.96;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3179,333,0 chrVIII 509478 . A G 3979.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.71;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3979,406,0 chrVIII 509537 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.0156;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.987;QD=20.88;ReadPosRankSum=0.110;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3341,363,0 chrVIII 510388 . A G 5037.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=19.6886;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.43;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5037,526,0 chrVIII 511546 . C A 4961.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.3233;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.55;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4961,496,0 chrVIII 512224 . A G 854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.713;DP=107;Dels=0.00;FS=4.523;HaplotypeScore=16.4431;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=-0.813;QD=7.98;ReadPosRankSum=1.551;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:12,95:107:44:887,44,0 chrVIII 512332 . C T 2646 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.62;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2679,282,0 chrVIII 512342 . C T 2612 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=23.75;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2645,264,0 chrVIII 513937 . T C 6009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=12.6130;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.605;QD=23.56;ReadPosRankSum=1.663;SB=-3.423e+03 GT:AD:DP:GQ:PL 1/1:1,251:255:99:6009,634,0 chrVIII 514601 . A T 2425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.589;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.481;QD=18.65;ReadPosRankSum=2.900;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2458,258,0 chrVIII 515189 . G C 3696.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.14;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3696,382,0 chrVIII 516779 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.06;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2873,289,0 chrVIII 516811 . G A 2808 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.4992;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.02;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2841,300,0 chrVIII 517336 . C T 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=11.9849;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.080;QD=21.91;ReadPosRankSum=-0.967;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3418,349,0 chrVIII 517419 . G A 296 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.01;FS=0.000;HaplotypeScore=17.6592;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=1.83;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:36:329,36,0 chrVIII 518179 . C T 5274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.3638;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.715;QD=25.60;ReadPosRankSum=0.245;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:5274,538,0 chrVIII 518458 . G A 6116.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=16.2311;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.96;SB=-3.287e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:6116,616,0 chrVIII 518542 . C G 3852.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.93;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3852,406,0 chrVIII 518911 . T C 1061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.410;QD=24.67;ReadPosRankSum=1.652;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:1094,114,0 chrVIII 518945 . A G 1089 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.67;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1122,117,0 chrVIII 519006 . G A 952 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.00;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:985,105,0 chrVIII 519013 . G A 985 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=18.94;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1018,108,0 chrVIII 519077 . T A 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.520;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=21.2444;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-0.539;QD=19.19;ReadPosRankSum=2.932;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:3,100:103:99:2010,207,0 chrVIII 519269 . T C 4377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.125;QD=26.37;ReadPosRankSum=1.711;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4377,448,0 chrVIII 519381 . C G 5333.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=18.9702;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.70;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,219:225:99:5333,568,0 chrVIII 519609 . C T 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.566;QD=26.20;ReadPosRankSum=0.830;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3825,385,0 chrVIII 520123 . C G 3074 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.11;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3107,318,0 chrVIII 521047 . G A 5575.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=16.3876;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5575,556,0 chrVIII 521132 . C T 4448.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.41;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4448,463,0 chrVIII 521352 . C T 7547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=13.8514;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.596;QD=24.74;ReadPosRankSum=1.164;SB=-3.360e+03 GT:AD:DP:GQ:PL 1/1:1,304:305:99:7547,748,0 chrVIII 521408 . T C 8031.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=12.3208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.71;SB=-4.519e+03 GT:AD:DP:GQ:PL 1/1:0,323:325:99:8031,823,0 chrVIII 522136 . G A 3590.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.4600;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3590,372,0 chrVIII 522216 . C T 3443.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.25;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3443,340,0 chrVIII 522291 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=190;Dels=0.00;FS=7.177;HaplotypeScore=14.3444;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.357;QD=21.16;ReadPosRankSum=2.398;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4020,418,0 chrVIII 522644 . A T 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.288;DP=164;Dels=0.01;FS=8.841;HaplotypeScore=29.6083;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.046;QD=19.68;ReadPosRankSum=3.127;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:4,159:163:99:3261,342,0 chrVIII 522950 . C T 3586.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.03;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3586,378,0 chrVIII 523230 . G A 4044.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=21.28;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4044,409,0 chrVIII 523239 . C T 3472.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=20.54;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3472,349,0 chrVIII 523298 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.9268;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.796;QD=21.07;ReadPosRankSum=2.006;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:3,160:164:99:3456,355,0 chrVIII 523454 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6841;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.99;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3702,373,0 chrVIII 523907 . A G 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.471;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.686;QD=26.79;ReadPosRankSum=1.686;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:4019,418,0 chrVIII 524455 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=3.424;HaplotypeScore=10.4487;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.090;QD=25.40;ReadPosRankSum=1.710;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3911,403,0 chrVIII 525056 . T C 3331.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3331,340,0 chrVIII 525297 . G A 2593 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=23.15;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2626,270,0 chrVIII 525441 . C A 841.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.447;DP=55;Dels=0.00;FS=34.479;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=28.82;MQ0=0;MQRankSum=0.154;QD=15.29;ReadPosRankSum=3.873;SB=-2.470e+02 GT:AD:DP:GQ:PL 0/1:9,44:55:61:871,0,61 chrVIII 525442 . A G 821.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.809;DP=54;Dels=0.00;FS=46.880;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=28.82;MQ0=0;MQRankSum=-1.480;QD=15.20;ReadPosRankSum=4.353;SB=-1.790e+02 GT:AD:DP:GQ:PL 0/1:11,42:54:94:851,0,94 chrVIII 525446 . A C 863.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;DP=61;Dels=0.00;FS=76.255;HaplotypeScore=7.2314;MLEAC=1;MLEAF=0.500;MQ=28.84;MQ0=0;MQRankSum=1.739;QD=14.15;ReadPosRankSum=3.740;SB=-1.410e+02 GT:AD:DP:GQ:PL 0/1:17,43:61:99:893,0,143 chrVIII 525451 . T C 695.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.415;DP=64;Dels=0.00;FS=118.233;HaplotypeScore=6.4427;MLEAC=1;MLEAF=0.500;MQ=28.62;MQ0=1;MQRankSum=-0.123;QD=10.86;ReadPosRankSum=0.036;SB=-1.302e+01 GT:AD:DP:GQ:PL 0/1:23,41:64:99:725,0,374 chrVIII 525454 . G A 658.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;DP=63;Dels=0.00;FS=134.112;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=28.53;MQ0=2;MQRankSum=-0.743;QD=10.44;ReadPosRankSum=-3.162;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:24,39:63:99:688,0,444 chrVIII 525457 . C A 603.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.860;DP=60;Dels=0.00;FS=141.817;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.67;MQ0=2;MQRankSum=-1.659;QD=10.05;ReadPosRankSum=-4.976;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:24,36:60:99:633,0,448 chrVIII 525464 . G A 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;DP=35;Dels=0.00;FS=58.131;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=5;MQRankSum=0.633;QD=0.74;ReadPosRankSum=-0.117;SB=1.45 GT:AD:DP:GQ:PL 0/1:27,8:35:56:56,0,475 chrVIII 525465 . C G 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.665;DP=35;Dels=0.00;FS=58.131;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=5;MQRankSum=-1.524;QD=0.66;ReadPosRankSum=-0.023;SB=1.45 GT:AD:DP:GQ:PL 0/1:27,8:35:53:53,0,496 chrVIII 525466 . C T 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.181;DP=35;Dels=0.00;FS=58.131;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=5;MQRankSum=-0.211;QD=0.80;ReadPosRankSum=-0.070;SB=0.965 GT:AD:DP:GQ:PL 0/1:27,8:35:58:58,0,513 chrVIII 525468 . C T 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.837;DP=35;Dels=0.00;FS=58.131;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=5;MQRankSum=1.008;QD=1.46;ReadPosRankSum=-0.305;SB=0.965 GT:AD:DP:GQ:PL 0/1:27,8:35:81:81,0,490 chrVIII 525469 . A G 38.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;DP=35;Dels=0.00;FS=58.131;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=5;MQRankSum=1.149;QD=1.09;ReadPosRankSum=0.070;SB=0.965 GT:AD:DP:GQ:PL 0/1:27,8:35:68:68,0,532 chrVIII 525472 . G A 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DP=35;Dels=0.00;FS=58.131;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=5;MQRankSum=-1.337;QD=1.14;ReadPosRankSum=0.539;SB=1.18 GT:AD:DP:GQ:PL 0/1:27,8:35:70:70,0,515 chrVIII 525475 . G A 42.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.489;DP=36;Dels=0.00;FS=56.784;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.75;MQ0=6;MQRankSum=0.171;QD=1.17;ReadPosRankSum=0.024;SB=1.18 GT:AD:DP:GQ:PL 0/1:28,8:36:72:72,0,472 chrVIII 525479 . T C 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;DP=35;Dels=0.00;FS=56.784;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.68;MQ0=6;MQRankSum=-1.098;QD=1.37;ReadPosRankSum=-0.317;SB=0.782 GT:AD:DP:GQ:PL 0/1:27,8:35:78:78,0,497 chrVIII 525481 . A G 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;DP=36;Dels=0.00;FS=56.784;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.31;MQ0=7;MQRankSum=-0.610;QD=1.36;ReadPosRankSum=-0.610;SB=0.965 GT:AD:DP:GQ:PL 0/1:27,8:36:79:79,0,472 chrVIII 525486 . C A 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;DP=37;Dels=0.00;FS=56.784;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.95;MQ0=8;MQRankSum=-0.756;QD=0.78;ReadPosRankSum=-1.537;SB=0.965 GT:AD:DP:GQ:PL 0/1:29,8:37:59:59,0,499 chrVIII 525487 . A T 38.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.464;DP=37;Dels=0.00;FS=56.784;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.95;MQ0=8;MQRankSum=0.366;QD=1.03;ReadPosRankSum=-1.195;SB=0.965 GT:AD:DP:GQ:PL 0/1:29,8:37:68:68,0,480 chrVIII 525491 . C G 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;DP=37;Dels=0.00;FS=56.784;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.95;MQ0=8;MQRankSum=0.512;QD=0.84;ReadPosRankSum=-0.952;SB=0.965 GT:AD:DP:GQ:PL 0/1:29,8:37:61:61,0,462 chrVIII 525493 . G A 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;DP=37;Dels=0.00;FS=56.784;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.95;MQ0=8;MQRankSum=1.342;QD=1.32;ReadPosRankSum=-0.952;SB=0.782 GT:AD:DP:GQ:PL 0/1:29,8:37:79:79,0,493 chrVIII 525495 . G A 55.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.009;DP=36;Dels=0.00;FS=55.383;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.86;MQ0=8;MQRankSum=-0.331;QD=1.53;ReadPosRankSum=-1.195;SB=1.18 GT:AD:DP:GQ:PL 0/1:28,8:36:85:85,0,462 chrVIII 525496 . G A 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.704;DP=36;Dels=0.00;FS=55.383;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.86;MQ0=8;MQRankSum=0.483;QD=1.42;ReadPosRankSum=-1.195;SB=0.782 GT:AD:DP:GQ:PL 0/1:28,8:36:81:81,0,491 chrVIII 525501 . G A 78.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;DP=67;Dels=0.00;FS=138.443;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.36;MQ0=8;MQRankSum=-0.873;QD=1.16;ReadPosRankSum=-5.308;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:28,39:67:99:108,0,469 chrVIII 525502 . T C 61.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;DP=67;Dels=0.00;FS=138.443;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=27.36;MQ0=8;MQRankSum=0.008;QD=0.91;ReadPosRankSum=-4.844;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:28,39:67:91:91,0,448 chrVIII 525505 . G A 77.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;DP=71;Dels=0.00;FS=144.865;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=27.45;MQ0=8;MQRankSum=2.119;QD=1.08;ReadPosRankSum=-4.998;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:28,43:71:99:107,0,492 chrVIII 525511 . T C 146.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.738;DP=78;Dels=0.00;FS=150.867;HaplotypeScore=1.8288;MLEAC=1;MLEAF=0.500;MQ=27.60;MQ0=8;MQRankSum=0.211;QD=1.87;ReadPosRankSum=-5.758;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:27,51:78:99:176,0,466 chrVIII 525514 . A C 152.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=152.136;HaplotypeScore=2.6955;MLEAC=1;MLEAF=0.500;MQ=27.61;MQ0=8;MQRankSum=0.383;QD=1.92;ReadPosRankSum=-2.188;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:27,52:79:99:182,0,431 chrVIII 525517 . T C 155.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.100;DP=80;Dels=0.00;FS=147.600;HaplotypeScore=3.4841;MLEAC=1;MLEAF=0.500;MQ=27.63;MQ0=8;MQRankSum=-0.205;QD=1.94;ReadPosRankSum=-0.350;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:26,53:80:99:185,0,441 chrVIII 525523 . C T 133.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.334;DP=81;Dels=0.00;FS=148.770;HaplotypeScore=2.4875;MLEAC=1;MLEAF=0.500;MQ=27.65;MQ0=8;MQRankSum=1.424;QD=1.64;ReadPosRankSum=3.765;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:26,54:81:99:163,0,430 chrVIII 525526 . G A 105.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.879;DP=79;Dels=0.00;FS=166.173;HaplotypeScore=2.4875;MLEAC=1;MLEAF=0.500;MQ=27.81;MQ0=7;MQRankSum=0.176;QD=1.33;ReadPosRankSum=4.480;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,54:79:99:135,0,446 chrVIII 525530 . T A 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;DP=73;Dels=0.00;FS=138.888;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.57;MQ0=7;MQRankSum=-0.102;QD=1.58;ReadPosRankSum=4.447;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:21,52:73:99:145,0,348 chrVIII 525533 . T C 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.904;DP=61;Dels=0.00;FS=103.790;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.29;MQ0=7;MQRankSum=-0.345;QD=0.75;ReadPosRankSum=4.888;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:17,44:61:76:76,0,260 chrVIII 525535 . G A 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.452;DP=60;Dels=0.00;FS=96.466;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.26;MQ0=7;MQRankSum=-0.012;QD=0.85;ReadPosRankSum=4.679;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:16,44:60:81:81,0,211 chrVIII 525537 . A T 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;DP=58;Dels=0.00;FS=80.636;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.19;MQ0=7;MQRankSum=0.807;QD=1.07;ReadPosRankSum=4.202;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:14,44:58:92:92,0,178 chrVIII 525538 . A G 65.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;DP=57;Dels=0.00;FS=72.011;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.16;MQ0=7;MQRankSum=0.134;QD=1.14;ReadPosRankSum=3.926;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:13,44:57:95:95,0,146 chrVIII 525544 . C A 149.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=7;QD=2.41;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:7,55:62:18:182,18,0 chrVIII 525547 . C T 181.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=6;QD=2.97;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:6,55:61:24:214,24,0 chrVIII 525556 . G A 238 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=4;QD=3.78;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,59:63:30:271,30,0 chrVIII 525559 . T C 299 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=62;Dels=0.00;FS=17.709;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=28.13;MQ0=3;MQRankSum=1.674;QD=4.82;ReadPosRankSum=1.674;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:4,58:62:36:332,36,0 chrVIII 525562 . A C 311 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=65;Dels=0.00;FS=32.767;HaplotypeScore=2.3460;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=3;MQRankSum=2.371;QD=4.78;ReadPosRankSum=2.291;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:5,60:65:36:344,36,0 chrVIII 525574 . T G 383.02 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.017;DP=64;Dels=0.00;FS=57.465;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=2;MQRankSum=2.364;QD=5.98;ReadPosRankSum=0.989;SB=-2.828e-02 GT:AD:DP:GQ:PL 1/1:6,58:64:26:416,26,0 chrVIII 525578 . G C 415 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=7.28;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:48:448,48,0 chrVIII 525579 . G A 419 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=7.35;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:48:452,48,0 chrVIII 525593 . A G 252 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=9.138;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;MQRankSum=-1.141;QD=6.15;ReadPosRankSum=1.648;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:1,40:41:33:285,33,0 chrVIII 525598 . A G 232.64 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.420;DP=56;Dels=0.00;FS=133.270;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;MQRankSum=1.137;QD=4.15;ReadPosRankSum=4.454;SB=-6.469e-01 GT:AD:DP:GQ:PL 1/1:20,36:56:11:265,11,0 chrVIII 525599 . C T 292 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=5.21;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:33:325,33,0 chrVIII 525601 . A G 275 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=4.91;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:33:308,33,0 chrVIII 525607 . T C 221.64 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.148;DP=65;Dels=0.00;FS=165.698;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=0;MQRankSum=1.072;QD=3.41;ReadPosRankSum=2.230;SB=-6.469e-01 GT:AD:DP:GQ:PL 1/1:27,38:65:11:254,11,0 chrVIII 525610 . C T 361 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=0;QD=5.55;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:42:394,42,0 chrVIII 525611 . G A 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;DP=65;Dels=0.00;FS=165.698;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.80;MQ0=0;MQRankSum=-0.592;QD=0.38;ReadPosRankSum=-0.579;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:38,27:65:55:55,0,242 chrVIII 525613 . A T 370 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=0;QD=5.69;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:42:403,42,0 chrVIII 525616 . A G 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.334;DP=67;Dels=0.00;FS=173.058;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.69;MQ0=0;MQRankSum=-0.715;QD=0.55;ReadPosRankSum=-0.297;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:38,29:67:67:67,0,261 chrVIII 525619 . A G 207.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;DP=70;Dels=0.00;FS=171.312;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.75;MQ0=0;MQRankSum=1.341;QD=2.96;ReadPosRankSum=-0.494;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:33,37:70:71:237,0,71 chrVIII 525622 . T C,G 179.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.48;MQ0=0;MQRankSum=-1.172;QD=3.09;ReadPosRankSum=2.365;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/2:2,23,33:58:71:239,92,71,148,0,136 chrVIII 525623 . G A 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.706;DP=60;Dels=0.00;FS=138.918;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.54;MQ0=0;MQRankSum=2.341;QD=0.60;ReadPosRankSum=1.901;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:37,23:60:66:66,0,85 chrVIII 525625 . T A 70.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.193;DP=60;Dels=0.00;FS=138.918;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.54;MQ0=0;MQRankSum=2.813;QD=1.17;ReadPosRankSum=1.079;SB=-2.847e+00 GT:AD:DP:GQ:PL 0/1:37,23:60:94:100,0,94 chrVIII 525628 . T A 88.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.639;DP=61;Dels=0.00;FS=142.622;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.56;MQ0=0;MQRankSum=-0.642;QD=1.44;ReadPosRankSum=1.144;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:24,37:61:99:118,0,172 chrVIII 525631 . G A,T 281.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.56;MQ0=0;QD=4.61;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/2:0,24,37:61:99:341,148,127,193,0,175 chrVIII 525634 . T C 342 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=0;QD=5.61;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:39:375,39,0 chrVIII 525635 . G A 348 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=0;QD=5.70;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:39:381,39,0 chrVIII 525637 . T C 90.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;DP=63;Dels=0.00;FS=122.156;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=27.61;MQ0=0;MQRankSum=2.003;QD=1.43;ReadPosRankSum=4.125;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:26,37:63:99:120,0,172 chrVIII 525641 . A G 129.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.690;DP=87;Dels=0.00;FS=133.600;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=27.88;MQ0=0;MQRankSum=2.700;QD=1.48;ReadPosRankSum=-0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,23:87:99:159,0,148 chrVIII 525644 . A C 256.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.826;DP=87;Dels=0.00;FS=139.109;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.88;MQ0=0;MQRankSum=-0.197;QD=2.94;ReadPosRankSum=2.036;SB=-1.570e+02 GT:AD:DP:GQ:PL 0/1:23,64:87:89:286,0,89 chrVIII 525646 . T A 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;DP=88;Dels=0.00;FS=121.106;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.90;MQ0=0;MQRankSum=2.049;QD=0.70;ReadPosRankSum=-1.095;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,19:88:92:92,0,339 chrVIII 525649 . C A,T 385.34 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.86;MQ0=0;QD=4.53;SB=-5.793e+02 GT:AD:DP:GQ:PL 1/2:0,16,69:85:38:445,365,356,80,0,38 chrVIII 525657 . G C 413 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.881;DP=81;Dels=0.00;FS=77.186;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;MQRankSum=0.273;QD=5.10;ReadPosRankSum=3.383;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:12,69:81:51:446,51,0 chrVIII 525658 . T A 412 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.671;DP=79;Dels=0.00;FS=66.111;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=0;MQRankSum=3.089;QD=5.22;ReadPosRankSum=2.794;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:10,69:79:51:445,51,0 chrVIII 525659 . T A 413 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=5.74;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:51:446,51,0 chrVIII 525661 . A C 414 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=5.75;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:51:447,51,0 chrVIII 525667 . C G 494 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.675;DP=84;Dels=0.00;FS=21.465;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;MQRankSum=1.760;QD=5.88;ReadPosRankSum=0.578;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:3,81:84:54:527,54,0 chrVIII 525672 . T A 481 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.692;DP=82;Dels=0.00;FS=21.147;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;MQRankSum=0.988;QD=5.87;ReadPosRankSum=1.358;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:54:514,54,0 chrVIII 525675 . C A 503 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.094;DP=76;Dels=0.00;FS=20.144;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;MQRankSum=2.241;QD=6.62;ReadPosRankSum=1.841;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:3,73:76:54:536,54,0 chrVIII 525676 . T G 499 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=6.57;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:54:532,54,0 chrVIII 525679 . T C 492 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=86;Dels=0.00;FS=8.686;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=28.32;MQ0=0;MQRankSum=-0.144;QD=5.72;ReadPosRankSum=3.551;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:6,80:86:54:525,54,0 chrVIII 525692 . T G 585 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=7.41;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:63:618,63,0 chrVIII 525694 . C A 621 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=7.86;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:66:654,66,0 chrVIII 525700 . A T 550 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=7.14;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:60:583,60,0 chrVIII 525703 . C T 553 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=7.18;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:60:586,60,0 chrVIII 525714 . A G 563 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=35.7139;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;QD=8.04;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:60:596,60,0 chrVIII 525718 . A T 103.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.299;DP=64;Dels=0.00;FS=2.435;HaplotypeScore=34.7770;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;MQRankSum=-1.396;QD=1.61;ReadPosRankSum=-6.757;SB=-1.151e+02 GT:AD:DP:GQ:PL 1/1:36,27:64:18:136,18,0 chrVIII 525720 . T A 136.06 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=34.7770;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=2.13;SB=-1.701e+02 GT:AD:DP:GQ:PL 1/1:0,28:64:21:169,21,0 chrVIII 525730 . T C 131.06 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=34.7770;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=3.45;SB=-2.901e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:21:164,21,0 chrVIII 525733 . T C 224.01 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=34.7770;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=5.90;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:27:257,27,0 chrVIII 525736 . T C 231.01 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=24.1454;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=6.08;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:27:264,27,0 chrVIII 525744 . G C 155.13 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;QD=5.75;SB=-2.281e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:18:188,18,0 chrVIII 525746 . A G 154.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;MQRankSum=0.963;QD=5.71;ReadPosRankSum=1.605;SB=-2.361e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:18:187,18,0 chrVIII 525749 . G T 149.13 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;QD=5.52;SB=-2.411e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:18:182,18,0 chrVIII 525763 . T A 121.26 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=6.38;SB=-1.923e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:15:154,15,0 chrVIII 525767 . T C 112.26 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=7.48;SB=-1.143e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:15:145,15,0 chrVIII 525769 . A G 108.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=15;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;MQRankSum=-1.736;QD=7.22;ReadPosRankSum=1.504;SB=-1.023e+02 GT:AD:DP:GQ:PL 1/1:1,14:15:15:141,15,0 chrVIII 525797 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=21.19;MQ0=0;MQRankSum=0.736;QD=2.01;ReadPosRankSum=0.736;SB=-4.380e+01 GT:AD:DP:GQ:PL 1/1:1,5:6:6:43,6,0 chrVIII 525799 . A C 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.044;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=4.4522;MLEAC=2;MLEAF=1.00;MQ=20.65;MQ0=0;MQRankSum=1.393;QD=3.00;ReadPosRankSum=0.000;SB=-8.272e+01 GT:AD:DP:GQ:PL 1/1:1,9:11:9:65,9,0 chrVIII 525820 . T C 576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.347;DP=35;Dels=0.00;FS=6.410;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=0;MQRankSum=1.634;QD=16.46;ReadPosRankSum=-1.436;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:66:609,66,0 chrVIII 525838 . G A 1108 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=0;QD=19.10;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1141,117,0 chrVIII 525866 . G A 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=84;Dels=0.00;FS=35.919;HaplotypeScore=1.8824;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;MQRankSum=3.482;QD=16.23;ReadPosRankSum=1.607;SB=-6.401e+01 GT:AD:DP:GQ:PL 1/1:6,78:84:38:1396,38,0 chrVIII 525943 . G A 344 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=29.36;MQ0=3;QD=11.10;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:39:377,39,0 chrVIII 525958 . A C 255 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.09;MQ0=3;QD=12.75;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:30:288,30,0 chrVIII 525980 . G C 218.01 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=1;QD=19.82;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:27:251,27,0 chrVIII 525997 . C T 67.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.56;MQ0=1;QD=8.44;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:8:12:100,12,0 chrVIII 526004 . A G 39.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.23;MQ0=0;MQRankSum=-0.731;QD=7.99;ReadPosRankSum=0.731;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:1,4:5:9:72,9,0 chrVIII 526366 . C T 40.97 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.45;MQ0=2;QD=3.15;SB=-9.547e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:73,9,0 chrVIII 526369 . G A 40.97 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.45;MQ0=2;QD=3.15;SB=-9.547e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:73,9,0 chrVIII 526385 . T C 68.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.238;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=15.88;MQ0=3;MQRankSum=1.257;QD=1.27;ReadPosRankSum=-0.849;SB=-9.526e+01 GT:AD:DP:GQ:PL 1/1:2,52:54:12:101,12,0 chrVIII 526390 . C T 95.26 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.7562;MLEAC=2;MLEAF=1.00;MQ=18.97;MQ0=3;QD=1.24;SB=-9.514e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:15:128,15,0 chrVIII 526513 . C T 394 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=22.32;MQ0=24;QD=7.88;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:45:427,45,0 chrVIII 526525 . C T 385 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.83;MQ0=17;QD=8.37;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:45:418,45,0 chrVIII 526588 . T G 70.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;DP=66;Dels=0.00;FS=13.297;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=9.43;MQ0=45;MQRankSum=1.156;QD=1.06;ReadPosRankSum=0.261;SB=-1.328e-01 GT:AD:DP:GQ:PL 0/1:53,13:66:10:100,0,10 chrVIII 526648 . C T 323 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.978;DP=48;Dels=0.00;FS=23.965;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=14.35;MQ0=22;MQRankSum=0.335;QD=6.73;ReadPosRankSum=0.335;SB=-3.700e+01 GT:AD:DP:GQ:PL 1/1:6,42:48:39:356,39,0 chrVIII 526660 . C T 243.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=33;Dels=0.00;FS=3.388;HaplotypeScore=4.9432;MLEAC=2;MLEAF=1.00;MQ=16.52;MQ0=9;MQRankSum=-0.433;QD=7.39;ReadPosRankSum=-0.722;SB=-8.597e+01 GT:AD:DP:GQ:PL 1/1:1,32:33:9:276,9,0 chrVIII 526669 . C T 119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;DP=23;Dels=0.00;FS=4.561;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=18.28;MQ0=4;MQRankSum=0.449;QD=5.17;ReadPosRankSum=3.633;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:12,11:23:70:149,0,70 chrVIII 526680 . C T 150.06 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.08;MQ0=10;QD=7.90;SB=-2.794e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:21:183,21,0 chrVIII 526795 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=18.22;MQ0=43;QD=0.23;SB=-2.677e+01 GT:AD:DP:GQ:PL 1/1:0,97:98:6:54,6,0 chrVIII 526804 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.346;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.22;MQ0=43;MQRankSum=1.669;QD=0.22;ReadPosRankSum=1.669;SB=-2.677e+01 GT:AD:DP:GQ:PL 1/1:1,97:98:6:53,6,0 chrVIII 526930 . C T 504 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=21.55;MQ0=2;QD=7.64;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:54:537,54,0 chrVIII 526950 . C T 988 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.024;DP=99;Dels=0.00;FS=15.951;HaplotypeScore=1.6598;MLEAC=2;MLEAF=1.00;MQ=21.28;MQ0=13;MQRankSum=-2.001;QD=9.98;ReadPosRankSum=2.918;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:3,96:99:99:1021,108,0 chrVIII 526990 . C T 1011 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.533;DP=126;Dels=0.00;FS=67.247;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.53;MQ0=25;MQRankSum=-2.472;QD=8.02;ReadPosRankSum=2.708;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:14,112:126:99:1044,111,0 chrVIII 527044 . A G 39.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.148;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=46.2148;MLEAC=1;MLEAF=0.500;MQ=23.09;MQ0=12;MQRankSum=1.193;QD=0.71;ReadPosRankSum=0.216;SB=-6.072e-02 GT:AD:DP:GQ:PL 0/1:45,10:55:16:69,0,16 chrVIII 527053 . C T 76.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.474;DP=55;Dels=0.00;FS=15.336;HaplotypeScore=16.4662;MLEAC=2;MLEAF=1.00;MQ=24.14;MQ0=4;MQRankSum=-2.406;QD=1.39;ReadPosRankSum=-1.379;SB=2.49 GT:AD:DP:GQ:PL 1/1:29,25:55:12:109,12,0 chrVIII 527056 . A C 46.24 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.646;DP=50;Dels=0.00;FS=30.569;HaplotypeScore=24.8406;MLEAC=1;MLEAF=0.500;MQ=24.87;MQ0=1;MQRankSum=2.646;QD=0.92;ReadPosRankSum=2.646;SB=14.75 GT:AD:DP:GQ:PL 1/1:3,17:50:9:78,9,0 chrVIII 527061 . T C 50.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.476;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=23.2532;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=1;MQRankSum=-0.961;QD=1.00;ReadPosRankSum=-0.728;SB=2.03 GT:AD:DP:GQ:PL 1/1:27,24:51:9:83,9,0 chrVIII 527071 . A G 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.229;DP=52;Dels=0.00;FS=6.284;HaplotypeScore=17.7339;MLEAC=1;MLEAF=0.500;MQ=25.17;MQ0=1;MQRankSum=-2.007;QD=1.48;ReadPosRankSum=1.140;SB=-7.889e-03 GT:AD:DP:GQ:PL 0/1:26,26:52:32:107,0,32 chrVIII 527074 . C T 81.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;DP=56;Dels=0.00;FS=6.946;HaplotypeScore=16.9452;MLEAC=1;MLEAF=0.500;MQ=25.46;MQ0=1;MQRankSum=-0.972;QD=1.45;ReadPosRankSum=0.989;SB=-7.065e-03 GT:AD:DP:GQ:PL 0/1:26,30:56:36:111,0,36 chrVIII 527090 . G A 101.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;DP=51;Dels=0.00;FS=9.546;HaplotypeScore=8.9669;MLEAC=1;MLEAF=0.500;MQ=25.09;MQ0=1;MQRankSum=0.020;QD=1.98;ReadPosRankSum=3.359;SB=-1.085e-02 GT:AD:DP:GQ:PL 0/1:18,33:51:27:131,0,27 chrVIII 527092 . G C 194.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.9766;MLEAC=2;MLEAF=1.00;MQ=25.33;MQ0=0;QD=3.88;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,50:50:24:227,24,0 chrVIII 527095 . C T 108.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.496;DP=52;Dels=0.00;FS=11.291;HaplotypeScore=6.9724;MLEAC=1;MLEAF=0.500;MQ=24.84;MQ0=2;MQRankSum=1.005;QD=2.08;ReadPosRankSum=2.496;SB=-7.607e-03 GT:AD:DP:GQ:PL 0/1:16,36:52:33:138,0,33 chrVIII 527098 . T C 109.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;DP=53;Dels=0.00;FS=11.228;HaplotypeScore=6.9724;MLEAC=1;MLEAF=0.500;MQ=24.28;MQ0=4;MQRankSum=0.439;QD=2.06;ReadPosRankSum=2.854;SB=-7.607e-03 GT:AD:DP:GQ:PL 0/1:17,33:53:33:139,0,33 chrVIII 527108 . C G 100.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;DP=56;Dels=0.00;FS=18.739;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=22.22;MQ0=10;MQRankSum=-0.209;QD=1.79;ReadPosRankSum=2.296;SB=-6.528e-03 GT:AD:DP:GQ:PL 0/1:21,32:56:54:130,0,54 chrVIII 527109 . A T 99.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.068;DP=60;Dels=0.00;FS=26.858;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=22.38;MQ0=10;MQRankSum=0.322;QD=1.65;ReadPosRankSum=3.005;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,34:60:99:129,0,103 chrVIII 527128 . T G 318.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;DP=100;Dels=0.00;FS=23.641;HaplotypeScore=46.4185;MLEAC=1;MLEAF=0.500;MQ=25.14;MQ0=12;MQRankSum=-0.049;QD=3.18;ReadPosRankSum=3.973;SB=-9.901e+01 GT:AD:DP:GQ:PL 0/1:46,30:100:99:348,0,450 chrVIII 527169 . G C 2317 filter AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=11;QD=15.55;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2350,255,0 chrVIII 527220 . C T 1619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=121;Dels=0.00;FS=4.314;HaplotypeScore=14.5547;MLEAC=2;MLEAF=1.00;MQ=25.29;MQ0=2;MQRankSum=2.248;QD=13.38;ReadPosRankSum=3.450;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:12,108:121:99:1652,171,0 chrVIII 527230 . C T 1203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.972;DP=123;Dels=0.00;FS=77.479;HaplotypeScore=16.8002;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=2;MQRankSum=-2.109;QD=9.78;ReadPosRankSum=5.054;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:25,98:123:99:1236,129,0 chrVIII 527263 . T G 372 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.089;DP=80;Dels=0.00;FS=59.762;HaplotypeScore=37.2152;MLEAC=2;MLEAF=1.00;MQ=25.29;MQ0=2;MQRankSum=2.049;QD=4.65;ReadPosRankSum=-4.997;SB=-4.886e-03 GT:AD:DP:GQ:PL 1/1:41,27:80:42:405,42,0 chrVIII 527272 . C T 144.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.745;DP=64;Dels=0.00;FS=33.508;HaplotypeScore=37.7803;MLEAC=1;MLEAF=0.500;MQ=22.02;MQ0=1;MQRankSum=1.017;QD=2.25;ReadPosRankSum=-1.673;SB=-6.528e-03 GT:AD:DP:GQ:PL 0/1:56,7:64:54:174,0,54 chrVIII 527274 . G A 76.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.457;DP=66;Dels=0.00;FS=34.736;HaplotypeScore=46.7103;MLEAC=1;MLEAF=0.500;MQ=22.55;MQ0=0;MQRankSum=-0.666;QD=1.15;ReadPosRankSum=1.978;SB=-2.120e+02 GT:AD:DP:GQ:PL 0/1:7,59:66:99:106,0,166 chrVIII 527311 . T A 1781 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.52;MQ0=0;QD=19.57;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1814,186,0 chrVIII 527424 . C T 28.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.251;DP=17;Dels=0.00;FS=4.523;HaplotypeScore=5.4540;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=0;MQRankSum=0.352;QD=1.69;ReadPosRankSum=-0.553;SB=1.24 GT:AD:DP:GQ:PL 1/1:6,11:17:6:60,6,0 chrVIII 527432 . C T 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=20;Dels=0.00;FS=5.229;HaplotypeScore=3.9807;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=0;MQRankSum=1.608;QD=2.25;ReadPosRankSum=-0.701;SB=2.03 GT:AD:DP:GQ:PL 1/1:6,14:20:9:77,9,0 chrVIII 527433 . T C 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.614;DP=20;Dels=0.00;FS=6.990;HaplotypeScore=3.9807;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=0;MQRankSum=0.614;QD=2.20;ReadPosRankSum=-0.425;SB=2.03 GT:AD:DP:GQ:PL 1/1:4,16:20:9:76,9,0 chrVIII 527439 . C T 57.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.465;DP=20;Dels=0.00;FS=6.990;HaplotypeScore=2.8558;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=0;MQRankSum=-0.425;QD=2.90;ReadPosRankSum=-0.142;SB=2.03 GT:AD:DP:GQ:PL 1/1:4,16:20:9:90,9,0 chrVIII 527440 . C T 64.97 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.8558;MLEAC=2;MLEAF=1.00;MQ=26.50;MQ0=1;QD=3.09;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:97,9,0 chrVIII 527450 . T G 126.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;DP=36;Dels=0.00;FS=4.175;HaplotypeScore=5.8212;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=2;MQRankSum=-0.204;QD=3.50;ReadPosRankSum=1.631;SB=-7.614e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:18:159,18,0 chrVIII 527517 . C A 113.26 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.62;MQ0=7;QD=2.76;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:15:146,15,0 chrVIII 527672 . A G 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;DP=45;Dels=0.00;FS=2.722;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=16.41;MQ0=11;MQRankSum=-0.711;QD=0.29;ReadPosRankSum=0.224;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,10:45:43:43,0,73 chrVIII 527678 . G A 142.13 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=16.41;MQ0=11;QD=3.16;SB=-8.388e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:18:175,18,0 chrVIII 527776 . T C 1403 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.35;MQ0=8;QD=15.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1436,150,0 chrVIII 527797 . T G 1451 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.42;MQ0=10;MQRankSum=0.577;QD=14.96;ReadPosRankSum=1.692;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1484,156,0 chrVIII 527820 . C T 1377 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=8;QD=12.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1410,141,0 chrVIII 527830 . C T 935 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.10;MQ0=7;QD=9.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:968,99,0 chrVIII 527851 . G A 452 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=6;QD=6.75;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:48:485,48,0 chrVIII 527877 . C T 85.51 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.33;MQ0=8;QD=2.09;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,41:41:12:118,12,0 chrVIII 528155 . A G 2638 filter AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.3713;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=13;QD=17.59;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2671,282,0 chrVIII 528226 . A G 4828.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.421;DP=339;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=37.82;MQ0=39;MQRankSum=-0.792;QD=14.24;ReadPosRankSum=3.380;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:4,335:339:99:4828,502,0 chrVIII 528367 . A G 3080 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.171;DP=166;Dels=0.00;FS=8.419;HaplotypeScore=11.3709;MLEAC=2;MLEAF=1.00;MQ=37.13;MQ0=8;MQRankSum=-0.836;QD=18.55;ReadPosRankSum=3.315;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:4,162:166:99:3113,336,0 chrVIII 528435 . T A 1137 filter AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=65;QD=9.40;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1170,117,0 chrVIII 528677 . A G 726 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=35.07;MQ0=19;QD=13.20;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:78:759,78,0 chrVIII 530012 . A G 1350 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=74;Dels=0.00;FS=3.140;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=39.24;MQ0=5;MQRankSum=-0.255;QD=18.24;ReadPosRankSum=1.681;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1383,150,0 chrVIII 530127 . T G 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=3.048;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-0.685;QD=23.70;ReadPosRankSum=2.267;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1953,204,0 chrVIII 530218 . T G 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=2.819;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=2;MQRankSum=0.326;QD=24.99;ReadPosRankSum=2.345;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:3007,315,0 chrVIII 532813 . A G 76.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.00;MQ0=0;MQRankSum=0.736;QD=12.75;ReadPosRankSum=0.736;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:1,5:6:12:109,12,0 chrVIII 540930 . C G 285.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.869;DP=562;Dels=0.00;FS=0.468;HaplotypeScore=43.0496;MLEAC=1;MLEAF=0.500;MQ=29.97;MQ0=29;MQRankSum=-3.818;QD=0.51;ReadPosRankSum=-3.794;SB=-1.520e+02 GT:AD:DP:GQ:PL 0/1:464,95:562:99:315,0,8956 chrVIII 541428 . C G 1465.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.422;DP=465;Dels=0.00;FS=79.713;HaplotypeScore=23.7184;MLEAC=1;MLEAF=0.500;MQ=28.30;MQ0=108;MQRankSum=-1.929;QD=3.15;ReadPosRankSum=2.334;SB=-8.500e+02 GT:AD:DP:GQ:PL 0/1:342,118:465:99:1495,0,3901 chrVIII 541460 . A C 832.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.828;DP=449;Dels=0.00;FS=102.361;HaplotypeScore=15.8171;MLEAC=1;MLEAF=0.500;MQ=24.80;MQ0=143;MQRankSum=1.798;QD=1.85;ReadPosRankSum=-2.990;SB=-4.390e+02 GT:AD:DP:GQ:PL 0/1:358,91:449:99:862,0,3270 chrVIII 541479 . C A 974.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.144;DP=408;Dels=0.00;FS=2.740;HaplotypeScore=22.0881;MLEAC=1;MLEAF=0.500;MQ=21.12;MQ0=173;MQRankSum=4.631;QD=2.39;ReadPosRankSum=-4.425;SB=-1.990e+02 GT:AD:DP:GQ:PL 0/1:261,145:408:99:1004,0,1438 chrVIII 541686 . C A 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.003;DP=368;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=5.08;MQ0=346;MQRankSum=0.467;QD=0.08;ReadPosRankSum=0.067;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:264,101:368:59:59,0,109 chrVIII 541800 . T C 716.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.443;DP=384;Dels=0.00;FS=0.000;HaplotypeScore=17.9392;MLEAC=1;MLEAF=0.500;MQ=14.52;MQ0=167;MQRankSum=2.519;QD=1.86;ReadPosRankSum=0.499;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:286,98:384:99:746,0,1654 chrVIII 550281 . A G 750.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;DP=225;Dels=0.00;FS=1.364;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=16.91;MQ0=177;MQRankSum=-1.131;QD=3.33;ReadPosRankSum=0.917;SB=-2.740e+02 GT:AD:DP:GQ:PL 0/1:54,171:225:61:780,0,61 chrVIII 550651 . T A 193.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.010;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=10.48;MQ0=228;MQRankSum=-0.988;QD=0.75;ReadPosRankSum=1.172;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,137:256:99:223,0,127 chrVIII 552015 . C T 56.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.470;DP=454;Dels=0.00;FS=0.000;HaplotypeScore=9.0454;MLEAC=1;MLEAF=0.500;MQ=9.47;MQ0=377;MQRankSum=0.709;QD=0.12;ReadPosRankSum=-0.960;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:348,103:454:86:86,0,487 chrVIII 553540 . A C 2589.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.750;DP=539;Dels=0.00;FS=1.128;HaplotypeScore=60.0848;MLEAC=1;MLEAF=0.500;MQ=56.19;MQ0=1;MQRankSum=8.185;QD=4.80;ReadPosRankSum=1.186;SB=-1.217e+03 GT:AD:DP:GQ:PL 0/1:383,152:539:99:2619,0,7745 chrVIII 553644 . A G 7285.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.253;DP=673;Dels=0.00;FS=1.291;HaplotypeScore=53.4723;MLEAC=1;MLEAF=0.500;MQ=56.82;MQ0=0;MQRankSum=4.832;QD=10.82;ReadPosRankSum=-0.518;SB=-2.392e+03 GT:AD:DP:GQ:PL 0/1:319,353:673:99:7285,0,6748 chrVIII 554135 . G A 320 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.50;MQ0=0;QD=11.03;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:36:353,36,0 chrVIII 554142 . G A 290 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;QD=10.74;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:33:323,33,0 chrVIII 554143 . T A 289 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;QD=10.70;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:33:322,33,0 chrVIII 554151 . T G 306 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=0;QD=10.55;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:36:339,36,0 chrVIII 554157 . T C 340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=3.010;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;MQRankSum=0.866;QD=10.62;ReadPosRankSum=1.516;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:39:373,39,0 chrVIII 554162 . C T 343 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.80;MQ0=0;QD=10.72;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:36:376,36,0 chrVIII 554170 . T C 220 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.28;MQ0=0;QD=7.10;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:30:253,30,0 chrVIII 554171 . C T 220 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.28;MQ0=0;QD=7.10;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:30:253,30,0 chrVIII 554202 . A G 589 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=47.13;MQ0=0;QD=16.83;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:63:622,63,0 chrVIII 554298 . T A 1145 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.391;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=6;MQRankSum=-1.195;QD=14.87;ReadPosRankSum=1.683;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1178,120,0 chrVIII 554362 . A T 4411.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=200;Dels=0.01;FS=12.064;HaplotypeScore=28.1679;MLEAC=2;MLEAF=1.00;MQ=47.13;MQ0=5;MQRankSum=1.463;QD=22.06;ReadPosRankSum=1.714;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4411,454,0 chrVIII 554380 . A C 384.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.304;DP=244;Dels=0.00;FS=3.292;HaplotypeScore=17.2963;MLEAC=1;MLEAF=0.500;MQ=51.32;MQ0=4;MQRankSum=3.271;QD=1.57;ReadPosRankSum=0.267;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:193,50:244:99:414,0,4108 chrVIII 554389 . A G 3847.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.340;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=19.8948;MLEAC=1;MLEAF=0.500;MQ=52.75;MQ0=4;MQRankSum=-1.542;QD=15.64;ReadPosRankSum=-0.199;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:52,193:246:99:3847,0,548 chrVIII 554434 . T C 377.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.055;DP=256;Dels=0.00;FS=1.028;HaplotypeScore=14.4639;MLEAC=1;MLEAF=0.500;MQ=55.60;MQ0=2;MQRankSum=-0.793;QD=1.47;ReadPosRankSum=-1.382;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:193,63:256:99:407,0,4443 chrVIII 554443 . C T 284.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.781;DP=252;Dels=0.00;FS=0.946;HaplotypeScore=12.2587;MLEAC=1;MLEAF=0.500;MQ=55.36;MQ0=2;MQRankSum=-0.686;QD=1.13;ReadPosRankSum=-1.590;SB=-8.801e+01 GT:AD:DP:GQ:PL 0/1:187,64:252:99:314,0,4469 chrVIII 554454 . C A 431.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.728;DP=253;Dels=0.00;FS=0.879;HaplotypeScore=30.9395;MLEAC=1;MLEAF=0.500;MQ=56.61;MQ0=1;MQRankSum=0.588;QD=1.70;ReadPosRankSum=0.337;SB=-1.010e+02 GT:AD:DP:GQ:PL 0/1:188,61:253:99:461,0,4438 chrVIII 554852 . A G 3744.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.741;DP=660;Dels=0.00;FS=156.146;HaplotypeScore=29.2697;MLEAC=1;MLEAF=0.500;MQ=50.66;MQ0=15;MQRankSum=-13.026;QD=5.67;ReadPosRankSum=0.336;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:400,257:660:99:3744,0,8404 chrVIII 554888 . A G 4459.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.349;DP=623;Dels=0.00;FS=17.338;HaplotypeScore=56.4767;MLEAC=1;MLEAF=0.500;MQ=53.01;MQ0=10;MQRankSum=-3.641;QD=7.16;ReadPosRankSum=2.113;SB=-1.266e+03 GT:AD:DP:GQ:PL 0/1:330,292:623:99:4459,0,6206 chrVIII 554922 . A G 4799.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.113;DP=631;Dels=0.00;FS=2.488;HaplotypeScore=48.0616;MLEAC=1;MLEAF=0.500;MQ=43.45;MQ0=38;MQRankSum=-3.363;QD=7.61;ReadPosRankSum=0.155;SB=-2.751e+03 GT:AD:DP:GQ:PL 0/1:319,309:631:99:4799,0,5428 chrVIII 555032 . T C 1776.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.199;DP=484;Dels=0.00;FS=319.520;HaplotypeScore=43.9935;MLEAC=1;MLEAF=0.500;MQ=46.04;MQ0=14;MQRankSum=-9.893;QD=3.67;ReadPosRankSum=0.696;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:351,132:484:99:1806,0,7301 chrVIII 555254 . G C 2656.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.462;DP=852;Dels=0.00;FS=5.765;HaplotypeScore=50.5803;MLEAC=1;MLEAF=0.500;MQ=48.93;MQ0=0;MQRankSum=-4.789;QD=3.12;ReadPosRankSum=1.075;SB=-1.315e+03 GT:AD:DP:GQ:PL 0/1:638,202:852:99:2686,0,13558 chrVIII 555454 . T C 9895.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.237;DP=951;Dels=0.00;FS=122.640;HaplotypeScore=73.1358;MLEAC=1;MLEAF=0.500;MQ=39.78;MQ0=64;MQRankSum=-19.101;QD=10.40;ReadPosRankSum=0.433;SB=-1.792e+03 GT:AD:DP:GQ:PL 0/1:264,683:951:99:9895,0,4196 chrVIII 555548 . T G 3485.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.157;DP=917;DS;Dels=0.00;FS=15.864;HaplotypeScore=95.3254;MLEAC=1;MLEAF=0.500;MQ=54.02;MQ0=1;MQRankSum=5.653;QD=3.80;ReadPosRankSum=1.995;SB=-1.294e+03 GT:AD:DP:GQ:PL 0/1:683,230:917:99:3485,0,12759 chrVIII 555751 . C T 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.665;DP=782;Dels=0.00;FS=12.033;HaplotypeScore=47.6654;MLEAC=1;MLEAF=0.500;MQ=53.77;MQ0=2;MQRankSum=-13.637;QD=0.02;ReadPosRankSum=0.368;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:644,135:782:48:48,0,12614 chrVIII 555754 . T A 108.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DP=772;Dels=0.00;FS=8.334;HaplotypeScore=46.8491;MLEAC=1;MLEAF=0.500;MQ=54.13;MQ0=1;MQRankSum=-13.670;QD=0.14;ReadPosRankSum=-0.117;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/1:635,137:772:99:138,0,12989 chrVIII 555840 . G A 1176.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.789;DP=722;Dels=0.00;FS=49.603;HaplotypeScore=46.3133;MLEAC=1;MLEAF=0.500;MQ=55.81;MQ0=0;MQRankSum=-2.002;QD=1.63;ReadPosRankSum=2.126;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:567,154:722:99:1206,0,11945 chrVIII 555849 . C G 979.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;DP=699;Dels=0.00;FS=55.956;HaplotypeScore=37.2162;MLEAC=1;MLEAF=0.500;MQ=54.88;MQ0=1;MQRankSum=-5.257;QD=1.40;ReadPosRankSum=3.004;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:551,145:699:99:1009,0,12062 chrVIII 555860 . A G 1002.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.166;DP=678;Dels=0.00;FS=82.875;HaplotypeScore=43.7414;MLEAC=1;MLEAF=0.500;MQ=54.11;MQ0=3;MQRankSum=-2.175;QD=1.48;ReadPosRankSum=1.616;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:529,144:678:99:1032,0,11477 chrVIII 555862 . T G 1104.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.575;DP=662;Dels=0.00;FS=69.768;HaplotypeScore=44.5301;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=3;MQRankSum=-3.624;QD=1.67;ReadPosRankSum=1.037;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:508,142:662:99:1134,0,10755 chrVIII 555971 . T A 847.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;DP=341;Dels=0.00;FS=6.718;HaplotypeScore=27.9591;MLEAC=1;MLEAF=0.500;MQ=52.37;MQ0=2;MQRankSum=-3.765;QD=2.48;ReadPosRankSum=-1.695;SB=-4.570e+02 GT:AD:DP:GQ:PL 0/1:258,83:341:99:877,0,5050 chrVIII 555993 . G A 582.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.855;DP=345;Dels=0.00;FS=11.889;HaplotypeScore=22.8170;MLEAC=1;MLEAF=0.500;MQ=54.02;MQ0=0;MQRankSum=-1.236;QD=1.69;ReadPosRankSum=-1.599;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/1:268,75:345:99:612,0,5236 chrVIII 556005 . T A 8551.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=394;Dels=0.00;FS=5.502;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=0.906;QD=21.70;ReadPosRankSum=1.635;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:1,393:394:99:8551,868,0 chrVIII 556024 . C A 1022.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.815;DP=461;Dels=0.00;FS=63.536;HaplotypeScore=16.6971;MLEAC=1;MLEAF=0.500;MQ=55.18;MQ0=0;MQRankSum=-0.062;QD=2.22;ReadPosRankSum=0.604;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:356,102:461:99:1052,0,7145 chrVIII 556078 . T C 5045.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.282;DP=482;Dels=0.00;FS=86.228;HaplotypeScore=22.3812;MLEAC=1;MLEAF=0.500;MQ=54.88;MQ0=0;MQRankSum=-0.558;QD=10.47;ReadPosRankSum=0.883;SB=-2.621e+03 GT:AD:DP:GQ:PL 0/1:201,277:482:99:5045,0,3572 chrVIII 556136 . A G 524.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.331;DP=223;Dels=0.00;FS=18.204;HaplotypeScore=18.1397;MLEAC=1;MLEAF=0.500;MQ=48.02;MQ0=0;MQRankSum=-4.615;QD=2.35;ReadPosRankSum=-2.555;SB=-2.100e+02 GT:AD:DP:GQ:PL 0/1:138,85:223:99:554,0,2771 chrVIII 556148 . C T 73.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.436;DP=202;Dels=0.00;FS=8.948;HaplotypeScore=12.8471;MLEAC=1;MLEAF=0.500;MQ=45.10;MQ0=0;MQRankSum=-6.668;QD=0.36;ReadPosRankSum=-5.526;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,67:202:99:103,0,2619 chrVIII 556188 . A C 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.425;DP=186;Dels=0.00;FS=4.516;HaplotypeScore=48.6329;MLEAC=1;MLEAF=0.500;MQ=39.16;MQ0=4;MQRankSum=-8.025;QD=0.09;ReadPosRankSum=-4.009;SB=-1.650e+02 GT:AD:DP:GQ:PL 0/1:114,67:186:47:47,0,2182 chrVIII 556197 . A G 410.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;DP=217;Dels=0.00;FS=5.707;HaplotypeScore=14.9600;MLEAC=1;MLEAF=0.500;MQ=37.24;MQ0=5;MQRankSum=-6.268;QD=1.89;ReadPosRankSum=-3.865;SB=-5.320e+02 GT:AD:DP:GQ:PL 0/1:115,100:217:99:440,0,1797 chrVIII 556225 . A T 2132.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;DP=301;Dels=0.00;FS=37.013;HaplotypeScore=105.0188;MLEAC=1;MLEAF=0.500;MQ=37.24;MQ0=8;MQRankSum=-2.412;QD=7.08;ReadPosRankSum=0.860;SB=-1.461e+03 GT:AD:DP:GQ:PL 0/1:102,198:301:99:2162,0,1174 chrVIII 556316 . G A 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;DP=302;Dels=0.00;FS=157.691;HaplotypeScore=34.2822;MLEAC=1;MLEAF=0.500;MQ=40.63;MQ0=3;MQRankSum=1.743;QD=0.12;ReadPosRankSum=0.201;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:254,48:302:65:65,0,4583 chrVIII 556318 . T G 4197.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.157;DP=294;Dels=0.00;FS=133.421;HaplotypeScore=33.4935;MLEAC=1;MLEAF=0.500;MQ=40.19;MQ0=3;MQRankSum=0.257;QD=14.28;ReadPosRankSum=0.402;SB=-1.281e+03 GT:AD:DP:GQ:PL 0/1:48,244:294:43:4197,0,43 chrVIII 556341 . A T 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.628;DP=236;Dels=0.00;FS=22.279;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=34.53;MQ0=3;MQRankSum=4.452;QD=14.84;ReadPosRankSum=2.575;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:50,186:236:99:3503,199,0 chrVIII 556344 . G A 3363.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.000;DP=229;Dels=0.00;FS=12.946;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=4;MQRankSum=4.950;QD=14.69;ReadPosRankSum=2.954;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:46,182:229:99:3363,222,0 chrVIII 556369 . G A 3050 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.346;DP=193;Dels=0.00;FS=4.949;HaplotypeScore=2.3346;MLEAC=2;MLEAF=1.00;MQ=32.21;MQ0=7;MQRankSum=4.314;QD=15.80;ReadPosRankSum=4.863;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:11,180:193:99:3083,350,0 chrVIII 556384 . C T 2740 filter AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=19.0385;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=16;QD=13.05;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:2773,297,0 chrVIII 556445 . G A 2014.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;DP=472;Dels=0.00;FS=42.159;HaplotypeScore=129.2459;MLEAC=1;MLEAF=0.500;MQ=31.32;MQ0=38;MQRankSum=-0.493;QD=4.27;ReadPosRankSum=9.348;SB=-4.850e+02 GT:AD:DP:GQ:PL 0/1:311,154:472:99:2044,0,2796 chrVIII 556555 . G A 572.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.975;DP=530;Dels=0.00;FS=0.000;HaplotypeScore=789.9062;MLEAC=1;MLEAF=0.500;MQ=29.38;MQ0=6;MQRankSum=-3.726;QD=1.08;ReadPosRankSum=-8.082;SB=-1.078e+03 GT:AD:DP:GQ:PL 0/1:275,254:530:99:602,0,354 chrVIII 556575 . T C 4080.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.069;DP=404;Dels=0.00;FS=58.430;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.56;MQ0=19;MQRankSum=6.058;QD=10.10;ReadPosRankSum=-5.436;SB=-8.588e+02 GT:AD:DP:GQ:PL 0/1:130,274:404:99:4080,0,271 chrVIII 556598 . A T 991.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.053;DP=225;Dels=0.00;FS=25.792;HaplotypeScore=66.9951;MLEAC=1;MLEAF=0.500;MQ=22.01;MQ0=28;MQRankSum=2.483;QD=4.40;ReadPosRankSum=-6.735;SB=-4.050e+02 GT:AD:DP:GQ:PL 0/1:112,113:225:99:1021,0,745 chrVIII 556612 . G T 199.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;DP=242;Dels=0.00;FS=12.241;HaplotypeScore=70.7099;MLEAC=1;MLEAF=0.500;MQ=21.89;MQ0=31;MQRankSum=1.372;QD=0.82;ReadPosRankSum=-1.366;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:204,38:242:99:229,0,1706 chrVIII 556615 . C T 99.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;DP=272;Dels=0.00;FS=47.609;HaplotypeScore=26.4509;MLEAC=1;MLEAF=0.500;MQ=22.97;MQ0=32;MQRankSum=0.970;QD=0.36;ReadPosRankSum=1.795;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:241,30:271:99:129,0,2020 chrVIII 556625 . G C 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;DP=335;Dels=0.00;FS=60.441;HaplotypeScore=55.9556;MLEAC=1;MLEAF=0.500;MQ=24.87;MQ0=37;MQRankSum=1.393;QD=0.03;ReadPosRankSum=4.067;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:305,30:335:41:41,0,3401 chrVIII 556644 . T C 1938.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.651;DP=367;Dels=0.01;FS=2.821;HaplotypeScore=133.2868;MLEAC=1;MLEAF=0.500;MQ=26.27;MQ0=32;MQRankSum=2.263;QD=5.28;ReadPosRankSum=3.651;SB=-7.660e+02 GT:AD:DP:GQ:PL 0/1:224,139:363:99:1968,0,2214 chrVIII 556648 . A G 3521.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.833;DP=385;Dels=0.02;FS=27.455;HaplotypeScore=425.5397;MLEAC=1;MLEAF=0.500;MQ=26.14;MQ0=32;MQRankSum=5.728;QD=9.15;ReadPosRankSum=2.004;SB=-1.192e+03 GT:AD:DP:GQ:PL 0/1:153,223:376:99:3521,0,1002 chrVIII 556650 . C T 855.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;DP=395;Dels=0.01;FS=30.031;HaplotypeScore=444.9490;MLEAC=1;MLEAF=0.500;MQ=26.13;MQ0=32;MQRankSum=-5.814;QD=2.16;ReadPosRankSum=-1.533;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:235,154:391:99:885,0,3541 chrVIII 556667 . A G 3987.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.624;DP=511;Dels=0.00;FS=3.048;HaplotypeScore=478.8493;MLEAC=1;MLEAF=0.500;MQ=27.60;MQ0=26;MQRankSum=5.586;QD=7.80;ReadPosRankSum=3.571;SB=-1.549e+03 GT:AD:DP:GQ:PL 0/1:280,231:511:99:3987,0,2466 chrVIII 556743 . G A 2309.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.328;DP=700;Dels=0.00;FS=15.118;HaplotypeScore=104.5700;MLEAC=1;MLEAF=0.500;MQ=28.73;MQ0=13;MQRankSum=2.428;QD=3.30;ReadPosRankSum=-4.904;SB=-2.330e+02 GT:AD:DP:GQ:PL 0/1:484,216:700:99:2339,0,3086 chrVIII 556764 . G A 1473.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.423;DP=550;Dels=0.00;FS=0.000;HaplotypeScore=214.7592;MLEAC=1;MLEAF=0.500;MQ=28.76;MQ0=9;MQRankSum=4.773;QD=2.68;ReadPosRankSum=1.049;SB=-6.200e+02 GT:AD:DP:GQ:PL 0/1:383,167:550:99:1503,0,2086 chrVIII 556769 . G A 1740.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.056;DP=549;Dels=0.00;FS=1.745;HaplotypeScore=155.0926;MLEAC=1;MLEAF=0.500;MQ=28.77;MQ0=8;MQRankSum=4.159;QD=3.17;ReadPosRankSum=2.385;SB=-5.190e+02 GT:AD:DP:GQ:PL 0/1:382,167:549:99:1770,0,1839 chrVIII 556784 . G A 1324.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.856;DP=409;Dels=0.00;FS=95.032;HaplotypeScore=106.9262;MLEAC=1;MLEAF=0.500;MQ=29.02;MQ0=7;MQRankSum=4.201;QD=3.24;ReadPosRankSum=4.766;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:295,114:409:99:1354,0,1592 chrVIII 556785 . G T 1379.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.323;DP=396;Dels=0.00;FS=33.494;HaplotypeScore=107.9797;MLEAC=1;MLEAF=0.500;MQ=29.03;MQ0=7;MQRankSum=4.899;QD=3.48;ReadPosRankSum=6.587;SB=-1.200e+02 GT:AD:DP:GQ:PL 0/1:246,108:396:99:1409,0,1199 chrVIII 556813 . A G 314.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.676;DP=134;Dels=0.01;FS=22.019;HaplotypeScore=228.1603;MLEAC=1;MLEAF=0.500;MQ=24.58;MQ0=1;MQRankSum=1.985;QD=2.34;ReadPosRankSum=-1.689;SB=-1.760e+02 GT:AD:DP:GQ:PL 0/1:96,37:133:99:344,0,707 chrVIII 556833 . G A 168.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=100;Dels=0.00;FS=17.405;HaplotypeScore=237.6864;MLEAC=2;MLEAF=1.00;MQ=22.48;MQ0=1;MQRankSum=1.377;QD=1.68;ReadPosRankSum=3.740;SB=-3.106e+01 GT:AD:DP:GQ:PL 1/1:22,77:100:21:201,21,0 chrVIII 556838 . G T 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384;DP=141;Dels=0.01;FS=2.477;HaplotypeScore=285.5426;MLEAC=1;MLEAF=0.500;MQ=21.99;MQ0=3;MQRankSum=4.151;QD=0.26;ReadPosRankSum=2.913;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:126,13:140:55:67,0,55 chrVIII 556839 . T A 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.724;DP=143;Dels=0.03;FS=2.433;HaplotypeScore=296.9758;MLEAC=1;MLEAF=0.500;MQ=21.90;MQ0=3;MQRankSum=3.731;QD=0.23;ReadPosRankSum=2.944;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:123,13:139:63:63,0,85 chrVIII 556840 . G A 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.227;DP=148;Dels=0.02;FS=19.605;HaplotypeScore=395.9699;MLEAC=1;MLEAF=0.500;MQ=21.75;MQ0=3;MQRankSum=-0.815;QD=0.20;ReadPosRankSum=3.795;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:66,76:145:59:59,0,88 chrVIII 556894 . T G 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.754;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=257.6536;MLEAC=1;MLEAF=0.500;MQ=19.95;MQ0=31;MQRankSum=-1.590;QD=0.06;ReadPosRankSum=3.481;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:226,27:254:44:44,0,184 chrVIII 556939 . T G 106.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;DP=111;Dels=0.04;FS=24.981;HaplotypeScore=195.8873;MLEAC=1;MLEAF=0.500;MQ=21.95;MQ0=7;MQRankSum=-1.227;QD=0.96;ReadPosRankSum=2.428;SB=-4.588e+01 GT:AD:DP:GQ:PL 0/1:76,31:107:74:136,0,74 chrVIII 556973 . G T 190.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.793;DP=120;Dels=0.00;FS=7.641;HaplotypeScore=91.9373;MLEAC=1;MLEAF=0.500;MQ=24.09;MQ0=7;MQRankSum=1.021;QD=1.58;ReadPosRankSum=7.520;SB=-1.720e+02 GT:AD:DP:GQ:PL 0/1:78,42:120:99:220,0,124 chrVIII 556990 . T C 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.983;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.5341;MLEAC=1;MLEAF=0.500;MQ=21.83;MQ0=21;MQRankSum=1.408;QD=0.47;ReadPosRankSum=-0.546;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,5:77:66:66,0,475 chrVIII 557000 . T C 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.921;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=1;MLEAF=0.500;MQ=20.31;MQ0=31;MQRankSum=1.523;QD=0.62;ReadPosRankSum=-0.305;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,6:87:84:84,0,461 chrVIII 557001 . G T 59.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.775;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=20.19;MQ0=32;MQRankSum=1.603;QD=0.67;ReadPosRankSum=-0.305;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,7:88:89:89,0,446 chrVIII 557188 . G T 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=18.20;MQ0=26;MQRankSum=-0.793;QD=1.67;ReadPosRankSum=-0.680;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,20:42:92:100,0,92 chrVIII 557202 . G A 72.09 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.45;MQ0=27;MQRankSum=-1.826;QD=1.85;ReadPosRankSum=-2.041;SB=-8.526e-02 GT:AD:DP:GQ:PL 0/1:24,15:39:14:102,0,14 chrVIII 562424 . A T 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.7714;MLEAC=1;MLEAF=0.500;MQ=14.78;MQ0=40;MQRankSum=0.211;QD=1.21;ReadPosRankSum=1.946;SB=-6.952e-03 GT:AD:DP:GQ:PL 0/1:24,46:71:37:116,0,37 chrVIII 562425 . G A 110.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.5601;MLEAC=1;MLEAF=0.500;MQ=15.50;MQ0=36;MQRankSum=-0.203;QD=1.62;ReadPosRankSum=2.009;SB=-6.528e-03 GT:AD:DP:GQ:PL 0/1:20,47:68:54:140,0,54 chrVIII 562440 . A G 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.381;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=17.83;MQ0=35;MQRankSum=1.199;QD=0.18;ReadPosRankSum=0.782;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,17:70:42:42,0,272 chrVIII 562443 . A G 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.8585;MLEAC=1;MLEAF=0.500;MQ=17.49;MQ0=36;MQRankSum=0.667;QD=0.23;ReadPosRankSum=0.270;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,17:70:46:46,0,275 chrVIII 562461 . G T 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;DP=57;Dels=0.02;FS=8.006;HaplotypeScore=39.5696;MLEAC=1;MLEAF=0.500;MQ=22.48;MQ0=19;MQRankSum=-1.178;QD=1.05;ReadPosRankSum=0.424;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,16:56:90:90,0,107 chrVIII 562639 . T G 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=9.1074;MLEAC=1;MLEAF=0.500;MQ=21.75;MQ0=3;MQRankSum=0.424;QD=2.58;ReadPosRankSum=1.395;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:14,5:19:67:79,0,67 chrX 20759 . G A 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.19;MQ0=5;QD=1.98;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:59,6,0 chrX 20810 . C T 378 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.46;MQ0=31;QD=4.91;SB=-6.777e-03 GT:AD:DP:GQ:PL 1/1:0,77:77:45:411,45,0 chrX 20813 . C T 354 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.22;MQ0=31;QD=4.60;SB=-7.033e-03 GT:AD:DP:GQ:PL 1/1:0,77:77:42:387,42,0 chrX 20828 . C T 411 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.69;MQ0=41;QD=4.72;SB=-6.648e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:48:444,48,0 chrX 20867 . G A 166.06 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.31;MQ0=43;QD=2.21;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,75:75:21:199,21,0 chrX 24349 . A T 54.97 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=0.90;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,61:61:9:87,9,0 chrX 24350 . C G 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=0.84;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,61:61:9:83,9,0 chrX 24351 . A T 55.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;MQRankSum=-1.335;QD=0.92;ReadPosRankSum=-1.562;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,60:61:9:88,9,0 chrX 24374 . C T 140.13 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.87;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,75:75:18:173,18,0 chrX 24377 . C T 170.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.24;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,76:76:21:203,21,0 chrX 24383 . G A 142.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.00;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,71:71:21:175,21,0 chrX 24386 . G C 158.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.32;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,68:68:21:191,21,0 chrX 24389 . A C 161.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.33;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,69:69:21:194,21,0 chrX 24403 . T C 170.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.83;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,60:60:24:203,24,0 chrX 24410 . G A 202.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.74;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,54:54:24:235,24,0 chrX 24413 . G C 190.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.65;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,52:52:24:223,24,0 chrX 24416 . A G 188.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.69;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,51:51:24:221,24,0 chrX 24438 . T C 136.13 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.13;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,33:33:18:169,18,0 chrX 24440 . A C 134.13 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.06;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,33:33:18:167,18,0 chrX 24442 . T C 133.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-2.239;QD=3.80;ReadPosRankSum=2.310;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:2,33:35:18:166,18,0 chrX 24461 . C A 273 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=9.10;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:33:306,33,0 chrX 24473 . A G 454 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=11.64;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,35:39:54:487,54,0 chrX 24488 . A T 1073 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=29.01;MQ0=0;QD=17.31;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1106,117,0 chrX 24532 . G A 4258.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1525;MLEAC=2;MLEAF=1.00;MQ=29.06;MQ0=0;QD=25.96;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:4258,439,0 chrX 24640 . T C 2579 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;QD=24.10;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2612,285,0 chrX 24647 . T A 2427 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.99;MQ0=0;QD=24.52;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2460,258,0 chrX 24710 . G A 1224 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=21.10;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1257,132,0 chrX 24716 . C T 1384 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=23.46;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1417,144,0 chrX 24719 . C T 1536 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=22.93;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1569,159,0 chrX 24723 . A G 1418 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=19.97;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1451,159,0 chrX 24725 . A G 1440 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=20.28;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1473,156,0 chrX 24737 . C T 1879 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=19.99;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1912,195,0 chrX 24739 . C T 1757 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=18.69;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1790,195,0 chrX 24744 . G T 1782 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=20.02;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1815,186,0 chrX 24746 . A G 1702 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;MQRankSum=-1.654;QD=19.12;ReadPosRankSum=1.693;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1735,186,0 chrX 24747 . C T 1779 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=20.22;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1812,186,0 chrX 24758 . T C 1733 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=16.05;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1766,198,0 chrX 24764 . T C 1811 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1844,198,0 chrX 24773 . A G 1864 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1897,204,0 chrX 24779 . A G 1809 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1842,198,0 chrX 24782 . G A 1890 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1923,198,0 chrX 24785 . C T 1768 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1801,195,0 chrX 24789 . G T 1744 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1777,183,0 chrX 24794 . T C 1541 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=20.719;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;MQRankSum=1.703;QD=13.06;ReadPosRankSum=1.703;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1574,180,0 chrX 24803 . A G 1633 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=13.61;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1666,180,0 chrX 24821 . A T 1737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.362;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;MQRankSum=-0.593;QD=15.65;ReadPosRankSum=3.378;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:4,107:111:99:1770,189,0 chrX 24839 . A C 1635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.81;MQ0=0;MQRankSum=-1.583;QD=17.58;ReadPosRankSum=1.695;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1668,186,0 chrX 24857 . T G 1327 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.84;MQ0=0;QD=17.01;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1360,156,0 chrX 24873 . A G 1109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;MQRankSum=-0.500;QD=17.33;ReadPosRankSum=3.677;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:5,59:64:99:1142,132,0 chrX 24887 . C T 776 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.07;MQ0=0;QD=19.40;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:809,93,0 chrX 24908 . G A 129.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.64;MQ0=0;QD=11.74;SB=-4.311e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:162,18,0 chrX 24926 . T C 40.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=13.66;SB=-2.121e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:73,9,0 chrX 25025 . A T 54.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=7.79;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:87,12,0 chrX 25027 . G T 54.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=7.79;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:87,12,0 chrX 25055 . C T 97.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=10.79;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:130,18,0 chrX 25070 . C A 119.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.55;MQ0=0;QD=11.91;SB=-2.606e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:21:152,21,0 chrX 25079 . A G 119.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.55;MQ0=0;QD=11.91;SB=-3.006e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:21:152,21,0 chrX 25082 . T G 119.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.55;MQ0=0;QD=11.91;SB=-2.606e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:21:152,21,0 chrX 25091 . G A 119.06 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.72;MQ0=0;QD=13.23;SB=-2.904e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:21:152,21,0 chrX 25099 . G A 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=7.79;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:87,12,0 chrX 25103 . G A 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=10.90;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:87,12,0 chrX 25106 . T C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=6.59;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:65,9,0 chrX 25127 . G A 32.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=6.59;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:65,9,0 chrX 25133 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=2.01;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:43,6,0 chrX 25145 . A G 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=0;QD=3.90;SB=-2.295e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:71,9,0 chrX 25151 . T C 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;MQRankSum=0.744;QD=2.78;ReadPosRankSum=1.488;SB=-2.298e+01 GT:AD:DP:GQ:PL 1/1:1,13:14:9:71,9,0 chrX 25154 . G A 67.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.38;SB=-2.252e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:100,12,0 chrX 25160 . G A 217 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=8.04;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:30:250,30,0 chrX 25165 . T C 247 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=9.15;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:30:280,30,0 chrX 25166 . T A 239 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=8.85;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:30:272,30,0 chrX 25169 . G A 244 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=9.04;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:30:277,30,0 chrX 25170 . T C 228 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;MQRankSum=1.037;QD=7.60;ReadPosRankSum=2.765;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:3,27:30:30:261,30,0 chrX 25175 . A G 304 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=7.24;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:42:337,42,0 chrX 25190 . C T 460 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;QD=7.42;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:54:493,54,0 chrX 25208 . A G 587 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=7.07;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:69:620,69,0 chrX 25211 . T A 617 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;MQRankSum=0.339;QD=6.71;ReadPosRankSum=1.694;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,91:92:72:650,72,0 chrX 25214 . T C 654 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;MQRankSum=1.411;QD=6.81;ReadPosRankSum=2.927;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,93:96:78:687,78,0 chrX 25223 . T C 803 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.6155;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;MQRankSum=-1.435;QD=7.65;ReadPosRankSum=1.699;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,104:105:93:836,93,0 chrX 25232 . G A 929 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=8.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:962,105,0 chrX 25238 . A G 903 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=9.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:936,99,0 chrX 25239 . A T 917 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=9.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:950,102,0 chrX 25243 . T G 800 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=7.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,104:104:96:833,96,0 chrX 25250 . G C 728 filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;QD=6.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:106:84:761,84,0 chrX 25259 . C T 825 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.8835;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=7.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,113:113:90:858,90,0 chrX 25262 . G A 752 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.8835;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=7.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:106:84:785,84,0 chrX 25264 . T C 765 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.4609;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;MQRankSum=0.057;QD=7.08;ReadPosRankSum=2.404;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,106:108:87:798,87,0 chrX 25298 . C T 920 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:953,99,0 chrX 25304 . A G 749 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,110:110:84:782,84,0 chrX 25306 . C T 780 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,110:110:84:813,84,0 chrX 25310 . C A 733 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,118:118:78:766,78,0 chrX 25313 . G A 753 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,115:115:81:786,81,0 chrX 25319 . G A 619 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.03;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,123:123:69:652,69,0 chrX 25322 . G T 649 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.07;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,128:128:69:682,69,0 chrX 25326 . T C 733 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.246;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.181;QD=5.24;ReadPosRankSum=3.396;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,136:140:81:766,81,0 chrX 25340 . A G 1186 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=7.96;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,149:149:99:1219,132,0 chrX 25346 . A G 1184 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;QD=7.69;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:1217,144,0 chrX 25349 . G A 1440 SnpCluster AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=9.00;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,160:160:99:1473,159,0 chrX 25352 . A T 1529 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=9.32;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,164:164:99:1562,168,0 chrX 25358 . C T 1789 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=0;QD=10.98;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:1822,192,0 chrX 25563 . A G 5554.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;QD=24.04;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5554,586,0 chrX 25622 . A G 5495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.058;DP=234;Dels=0.00;FS=2.997;HaplotypeScore=17.5423;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=1.582;QD=23.48;ReadPosRankSum=1.391;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:2,230:234:99:5495,593,0 chrX 25720 . C T 4617.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.92;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4617,472,0 chrX 25877 . G T 6015.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.06;SB=-3.240e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:6015,625,0 chrX 26108 . C T 3747.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3747,411,0 chrX 26191 . G A 3522.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=25.71;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3522,361,0 chrX 26202 . T C 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=139;Dels=0.00;FS=3.506;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.636;QD=21.94;ReadPosRankSum=1.707;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3082,345,0 chrX 26272 . T C 2964 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.29;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2997,324,0 chrX 26368 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.79;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3133,324,0 chrX 26481 . A G 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.341;QD=23.22;ReadPosRankSum=1.682;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3214,348,0 chrX 26556 . G A 2508 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.56;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2541,261,0 chrX 26567 . G T 2553 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.4322;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.64;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2586,264,0 chrX 26602 . C T 2769 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.51;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2802,294,0 chrX 26631 . C T 2713 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.6494;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.42;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2746,288,0 chrX 26666 . G T 2841 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.10;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2874,306,0 chrX 26695 . A G 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-0.457;QD=24.04;ReadPosRankSum=1.649;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:3086,333,0 chrX 26910 . G A 4192.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.23;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4192,456,0 chrX 26946 . T C 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=1.665;QD=21.57;ReadPosRankSum=1.665;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3387,375,0 chrX 26958 . G A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=23.29;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3494,366,0 chrX 26988 . T C 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=148;Dels=0.00;FS=5.916;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-1.143;QD=21.43;ReadPosRankSum=2.939;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3205,345,0 chrX 27163 . C T 4055.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.9288;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=22.04;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4055,429,0 chrX 27203 . C T 3452.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=21.05;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:3452,355,0 chrX 27210 . C T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=20.69;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3289,354,0 chrX 27301 . G A 4345.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=24.55;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4345,457,0 chrX 27330 . G A 3440.01 SnpCluster AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=19.01;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3440,375,0 chrX 27332 . T C 3608.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=3.154;HaplotypeScore=1.7172;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;MQRankSum=0.433;QD=19.61;ReadPosRankSum=1.713;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3608,381,0 chrX 27339 . T C 3406.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=190;Dels=0.00;FS=3.026;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=-0.536;QD=17.93;ReadPosRankSum=2.424;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3406,369,0 chrX 27510 . T C 5673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=230;Dels=0.00;FS=2.670;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-0.070;QD=24.67;ReadPosRankSum=2.428;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:5673,598,0 chrX 27780 . T C 5933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=275;Dels=0.00;FS=10.202;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.031;QD=21.57;ReadPosRankSum=2.414;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:2,272:275:99:5933,654,0 chrX 27942 . C T 5465.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.77;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,236:240:99:5465,565,0 chrX 28011 . T C 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.599;DP=179;Dels=0.00;FS=5.348;HaplotypeScore=15.0046;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=1.458;QD=21.06;ReadPosRankSum=2.927;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:3,175:179:99:3770,399,0 chrX 28144 . A G 4147.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=19.38;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4147,444,0 chrX 28147 . G C 3856.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=18.90;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,200:204:99:3856,429,0 chrX 28178 . C T 3919.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=20.31;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:3919,411,0 chrX 28314 . G A 4087.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=2.8489;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;QD=20.75;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4087,432,0 chrX 28332 . G T 157.46 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;DP=168;Dels=0.00;FS=10.394;HaplotypeScore=2.5747;MLEAC=1;MLEAF=0.500;MQ=41.72;MQ0=0;MQRankSum=1.432;QD=0.94;ReadPosRankSum=-8.118;SB=-1.459e+00 GT:AD:DP:GQ:PL 0/1:141,27:168:1:186,0,1 chrX 28338 . C T 88.26 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.9574;MLEAC=2;MLEAF=1.00;MQ=41.84;MQ0=0;QD=0.57;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:15:121,15,0 chrX 28380 . C T 2862 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=18.83;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2895,294,0 chrX 28401 . G A 3403.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=19.90;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3403,351,0 chrX 28422 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=176;Dels=0.00;FS=2.967;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.551;QD=20.64;ReadPosRankSum=2.422;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3632,381,0 chrX 28769 . G T 2617 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.56;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2650,279,0 chrX 28795 . G A 2470 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.98;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2503,261,0 chrX 28824 . A G 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.998;QD=21.91;ReadPosRankSum=1.703;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2640,288,0 chrX 28919 . T A 2163 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.2427;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.21;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2196,237,0 chrX 29088 . A T 2560 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=24.38;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2593,264,0 chrX 29145 . C A 2139 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.52;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2172,234,0 chrX 29241 . G A 2492 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=23.73;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2525,264,0 chrX 29255 . A T 2643 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=22.02;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2676,282,0 chrX 29300 . C T 2332 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=20.64;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2365,252,0 chrX 29329 . G A 2392 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.17;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2425,255,0 chrX 29423 . T C 3204.99 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=23.22;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3238,348,0 chrX 29443 . C T 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=104.1450;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=0.672;QD=22.33;ReadPosRankSum=-0.620;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3047,327,0 chrX 29458 . C A 62.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235;DP=128;Dels=0.00;FS=3.301;HaplotypeScore=311.9039;MLEAC=1;MLEAF=0.500;MQ=51.28;MQ0=0;MQRankSum=2.268;QD=0.48;ReadPosRankSum=-4.490;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:119,8:128:86:92,0,86 chrX 29515 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=21.67;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2633,270,0 chrX 29538 . C G 2210 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=21.67;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2243,237,0 chrX 29540 . G T 2188 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=21.04;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2221,240,0 chrX 29610 . C G 3192 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.01;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3225,348,0 chrX 29671 . G T 2973 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=15.9376;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=22.87;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3006,312,0 chrX 29791 . A T 3087 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=21.14;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3120,316,0 chrX 29806 . A T 2590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=145;Dels=0.01;FS=8.409;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-0.060;QD=17.86;ReadPosRankSum=2.347;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2623,279,0 chrX 29815 . G T 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.01;FS=3.849;HaplotypeScore=8.5207;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=-0.983;QD=18.57;ReadPosRankSum=0.234;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2800,291,0 chrX 29943 . T C 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=9.219;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;MQRankSum=1.462;QD=20.64;ReadPosRankSum=2.375;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2758,291,0 chrX 29944 . T C 2810 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=20.97;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2843,297,0 chrX 29957 . G A 2832 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.13;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2865,294,0 chrX 30160 . G T 2414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.006;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5456;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=1.793;QD=17.24;ReadPosRankSum=3.354;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:6,134:140:99:2447,273,0 chrX 30164 . T G 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.276;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.7569;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=1.381;QD=17.60;ReadPosRankSum=3.152;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:5,130:135:99:2409,270,0 chrX 30237 . C G 1854 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=16.26;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:1887,201,0 chrX 30252 . A G 1945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=4.135;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;MQRankSum=-0.912;QD=16.77;ReadPosRankSum=1.702;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:1978,216,0 chrX 30273 . T C 2095 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=15.07;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2128,237,0 chrX 30288 . G T 2070 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=13.89;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2103,219,0 chrX 30291 . C T 2327 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=15.94;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2360,240,0 chrX 30332 . A G 3168 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.56;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3201,345,0 chrX 30485 . G C 3659.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.2727;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=24.56;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3659,379,0 chrX 30542 . C T 2961 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.1895;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.93;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2994,315,0 chrX 30579 . T G 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=3.997;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.437;QD=23.45;ReadPosRankSum=1.704;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2917,315,0 chrX 30629 . T C 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=130;Dels=0.00;FS=6.620;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;MQRankSum=0.970;QD=19.50;ReadPosRankSum=2.219;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:2,126:130:99:2568,276,0 chrX 30656 . C T 2329 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;QD=17.78;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2362,246,0 chrX 30667 . A G 2346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;MQRankSum=-1.230;QD=17.00;ReadPosRankSum=1.682;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2379,261,0 chrX 30689 . G A 2082 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=15.77;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2115,222,0 chrX 30701 . C A 1850 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=14.23;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1883,198,0 chrX 30890 . A T 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.047;DP=110;Dels=0.00;FS=3.044;HaplotypeScore=6.8202;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;MQRankSum=-0.749;QD=21.20;ReadPosRankSum=2.271;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2365,243,0 chrX 30925 . A G 2603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;MQRankSum=-0.577;QD=22.06;ReadPosRankSum=1.673;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2636,282,0 chrX 30982 . G A 3644.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=17.4303;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=24.13;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3644,373,0 chrX 31017 . T C 3461.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=24.03;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3461,372,0 chrX 31171 . A T 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.125;QD=22.79;ReadPosRankSum=2.184;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3373,360,0 chrX 31175 . T A 3469.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=23.13;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3469,361,0 chrX 31505 . T C 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.5049;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.567;QD=24.23;ReadPosRankSum=2.397;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3416,372,0 chrX 31610 . T C 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=-0.671;QD=23.82;ReadPosRankSum=2.380;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3359,360,0 chrX 31756 . A T 5311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;MQRankSum=-0.521;QD=23.50;ReadPosRankSum=1.701;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:5311,544,0 chrX 31774 . A G 4706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.968;DP=222;Dels=0.00;FS=5.328;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=-0.750;QD=21.20;ReadPosRankSum=2.959;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:3,218:222:99:4706,510,0 chrX 31798 . C G 4313.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.01;FS=0.000;HaplotypeScore=5.4725;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=19.69;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4313,462,0 chrX 31824 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=17.63;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3136,324,0 chrX 31835 . G A 2529 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;QD=15.14;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:2562,273,0 chrX 31838 . G A 2420 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=15.03;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2453,261,0 chrX 31900 . A G 2928 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=19.78;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2961,318,0 chrX 31964 . T C 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=173;Dels=0.00;FS=2.983;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.476;QD=21.70;ReadPosRankSum=2.421;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3754,417,0 chrX 31975 . T C 3987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=187;Dels=0.00;FS=5.956;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=1.091;QD=21.32;ReadPosRankSum=2.877;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:3987,426,0 chrX 32004 . G A 4341.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.7829;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.10;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4341,486,0 chrX 32051 . T C 4551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=211;Dels=0.00;FS=2.869;HaplotypeScore=17.2871;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-0.262;QD=21.57;ReadPosRankSum=2.403;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:4551,498,0 chrX 32507 . G C 5372.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.20;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:0,238:242:99:5372,594,0 chrX 32714 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.347;QD=25.62;ReadPosRankSum=1.655;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3459,355,0 chrX 32847 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.77;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3529,372,0 chrX 32964 . A G 4217.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.81;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4217,450,0 chrX 33178 . A G 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.0912;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.182;QD=19.20;ReadPosRankSum=2.346;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2759,306,0 chrX 33235 . A G 1572 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=16.90;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,90:93:99:1605,174,0 chrX 33256 . G A 1716 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.28;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1749,177,0 chrX 33289 . G A 1769 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.57;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1802,183,0 chrX 33473 . T C 1777 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=25.03;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1810,198,0 chrX 33525 . C G 1398 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.30;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1431,159,0 chrX 33710 . A T 1172 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.44;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1205,129,0 chrX 33800 . A G 1154 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1187,129,0 chrX 33847 . T G 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.570;QD=25.83;ReadPosRankSum=1.678;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1686,174,0 chrX 34012 . A G 2505 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2538,282,0 chrX 34093 . G A 2763 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2796,291,0 chrX 34147 . A G 3969.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.8227;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.91;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3969,429,0 chrX 34438 . G A 5646.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.8101;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.67;SB=-3.317e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5646,601,0 chrX 34465 . A G 5427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=244;Dels=0.00;FS=2.862;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.377;QD=22.24;ReadPosRankSum=2.409;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:2,242:244:99:5427,574,0 chrX 34626 . T G 5069.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.69;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5069,540,0 chrX 34681 . G A 4207.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.9510;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.50;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4207,453,0 chrX 34837 . T C 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.316;QD=24.06;ReadPosRankSum=1.710;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3826,405,0 chrX 34918 . G A 4648.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.90;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4648,481,0 chrX 34935 . C T 4644.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.2052;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.91;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4644,495,0 chrX 35035 . A T 4699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.140;DP=206;Dels=0.00;FS=9.417;HaplotypeScore=14.7114;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.507;QD=22.81;ReadPosRankSum=2.342;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4699,499,0 chrX 35563 . T C 4955.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=17.6652;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=22.12;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4955,549,0 chrX 35623 . A C 4208.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=19.94;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4208,450,0 chrX 35632 . G A 4321.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=20.10;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4321,457,0 chrX 35680 . A G 4556.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=7.0839;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=18.83;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:4556,498,0 chrX 35704 . T C 4766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=244;Dels=0.00;FS=6.950;HaplotypeScore=9.6291;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.411;QD=19.53;ReadPosRankSum=2.409;SB=-2.746e+03 GT:AD:DP:GQ:PL 1/1:2,241:244:99:4766,531,0 chrX 35752 . G A 4390.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.11;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4390,457,0 chrX 35812 . G A 5020.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=22.51;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5020,514,0 chrX 35830 . A G 4644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=234;Dels=0.00;FS=3.024;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-1.794;QD=19.85;ReadPosRankSum=2.418;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:2,231:234:99:4644,513,0 chrX 35923 . C G 5084.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=15.2934;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.32;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5084,535,0 chrX 36034 . A G 4852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=224;Dels=0.00;FS=3.013;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.370;QD=21.66;ReadPosRankSum=2.416;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:2,221:224:99:4852,525,0 chrX 36050 . G A 4894.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=22.55;SB=-2.953e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4894,505,0 chrX 36127 . G A 4380.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.4201;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.81;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4380,448,0 chrX 36139 . A C 4090.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.97;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4090,438,0 chrX 36217 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.1580;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.37;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3300,354,0 chrX 36357 . A G 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=3.281;HaplotypeScore=8.3356;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-0.244;QD=18.30;ReadPosRankSum=1.709;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2759,309,0 chrX 36391 . G A 888 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=84.6784;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=5.58;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:93:921,93,0 chrX 36583 . A G 7444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=305;Dels=0.00;FS=9.658;HaplotypeScore=21.2743;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-0.773;QD=24.41;ReadPosRankSum=2.312;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:2,301:305:99:7444,805,0 chrX 36794 . C T 9747.01 filter AC=2;AF=1.00;AN=2;DP=440;Dels=0.00;FS=0.000;HaplotypeScore=15.3323;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.15;SB=-5.940e+03 GT:AD:DP:GQ:PL 1/1:0,438:440:99:9747,1009,0 chrX 36818 . C G 9104.01 filter AC=2;AF=1.00;AN=2;DP=465;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.58;SB=-6.180e+03 GT:AD:DP:GQ:PL 1/1:0,456:465:99:9104,979,0 chrX 36820 . G A 9104.01 filter AC=2;AF=1.00;AN=2;DP=465;Dels=0.00;FS=0.000;HaplotypeScore=4.3143;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.58;SB=-5.800e+03 GT:AD:DP:GQ:PL 1/1:0,464:465:99:9104,988,0 chrX 37125 . G C 5884.01 filter AC=2;AF=1.00;AN=2;DP=370;Dels=0.00;FS=0.000;HaplotypeScore=6.4266;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=15.90;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,368:370:99:5884,663,0 chrX 37127 . T C 6198.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=377;Dels=0.00;FS=11.489;HaplotypeScore=8.5225;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.134;QD=16.44;ReadPosRankSum=2.417;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:2,373:377:99:6198,649,0 chrX 37500 . T C 4308.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.56;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4308,477,0 chrX 37925 . G C 4031.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.01;FS=0.000;HaplotypeScore=22.4888;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.65;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4031,426,0 chrX 37938 . T G 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=178;Dels=0.01;FS=2.488;HaplotypeScore=12.5421;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.301;QD=20.78;ReadPosRankSum=2.904;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:3699,396,0 chrX 38095 . A G 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=192;Dels=0.00;FS=2.577;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.607;QD=20.13;ReadPosRankSum=2.922;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:3865,420,0 chrX 38155 . A G 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.431;QD=21.39;ReadPosRankSum=1.713;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3893,423,0 chrX 38250 . A G 3987.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.91;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3987,429,0 chrX 38301 . C T 4392.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.74;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4392,460,0 chrX 38387 . C T 3683.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.1658;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.89;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3683,379,0 chrX 38691 . A G 3024 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.74;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3057,333,0 chrX 39241 . A G 4950.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4950,523,0 chrX 39500 . A G 3839.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:3839,408,0 chrX 39598 . A G 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=144;Dels=0.00;FS=3.036;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.576;QD=21.54;ReadPosRankSum=2.398;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3135,336,0 chrX 39657 . C T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.0215;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.68;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3924,400,0 chrX 39814 . C T 4402.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.59;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4402,451,0 chrX 40100 . A T 1131 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.2324;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=18.54;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1164,123,0 chrX 40107 . G T 1180 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.03;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1213,126,0 chrX 40239 . T C 3793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8672;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.925;QD=25.80;ReadPosRankSum=2.007;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3793,411,0 chrX 40731 . G T 2731 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2764,288,0 chrX 41107 . T C 3462.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.55;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3462,363,0 chrX 41250 . G T 2688 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=25.12;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2721,276,0 chrX 41577 . T C 5609.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.60;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5609,580,0 chrX 41794 . G A 2261 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=18.53;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2294,246,0 chrX 41803 . A G 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=3.171;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-1.323;QD=20.55;ReadPosRankSum=1.669;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2294,246,0 chrX 42451 . G A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.5456;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3631,381,0 chrX 42958 . A G 4150.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4150,465,0 chrX 43261 . G C 3590.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3590,399,0 chrX 43432 . A G 3435.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.02;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3435,357,0 chrX 43594 . A C 2751 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.72;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2784,303,0 chrX 43681 . G A 2123 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.85;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2156,225,0 chrX 44212 . T C 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.045;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.777;QD=24.26;ReadPosRankSum=1.705;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3138,336,0 chrX 44500 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.734;DP=155;Dels=0.00;FS=5.404;HaplotypeScore=11.2122;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.214;QD=22.97;ReadPosRankSum=2.890;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3560,384,0 chrX 44863 . G A 4367.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.24;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4367,454,0 chrX 44980 . T C 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.499;QD=22.80;ReadPosRankSum=1.666;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2404,264,0 chrX 45076 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.4295;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.51;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3527,372,0 chrX 45217 . C T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3509,375,0 chrX 45625 . C T 2898 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.8564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2931,300,0 chrX 45742 . T C 2425 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2458,273,0 chrX 45922 . G A 2993 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.8844;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3026,324,0 chrX 46116 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3456,366,0 chrX 46267 . C T 3450.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.47;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3450,366,0 chrX 46993 . A G 2608 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.29;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2641,294,0 chrX 47084 . C T 2729 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2762,288,0 chrX 47473 . T C 1879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=83;Dels=0.00;FS=6.398;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.91;MQ0=0;MQRankSum=-0.846;QD=22.64;ReadPosRankSum=2.391;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1912,201,0 chrX 47899 . C T 3360.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.17;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3360,351,0 chrX 47941 . C T 3128 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.25;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3161,330,0 chrX 48015 . T C 3795.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.33;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3795,414,0 chrX 48179 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=24.81;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3598,370,0 chrX 48186 . G A 3518.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.27;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3518,378,0 chrX 48515 . G C 3891.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3891,411,0 chrX 48559 . C G 3852.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0680;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.03;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3852,405,0 chrX 48799 . G A 5336.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.93;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5336,559,0 chrX 48937 . A G 3923.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.49;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3923,438,0 chrX 49357 . G A 2817 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.0190;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.09;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2850,294,0 chrX 49500 . T C 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=150;Dels=0.00;FS=6.286;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.926;QD=20.90;ReadPosRankSum=2.335;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3168,342,0 chrX 49501 . G A 3200 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.77;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3233,336,0 chrX 49551 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.37;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3334,345,0 chrX 49768 . T C 4290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=183;Dels=0.00;FS=2.917;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-1.100;QD=23.44;ReadPosRankSum=2.288;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:4290,462,0 chrX 50434 . A G 2244 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.68;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2277,252,0 chrX 50478 . A T 3284.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.7025;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.34;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3284,334,0 chrX 50613 . A C 3728.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.69;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3728,393,0 chrX 51007 . C T 3365.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.38;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3365,354,0 chrX 51321 . A G 1427 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.04;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1460,156,0 chrX 51409 . A G 2153 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.15;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2186,234,0 chrX 51487 . G A 2087 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.45;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2120,216,0 chrX 51509 . T C 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.4685;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.962;QD=20.83;ReadPosRankSum=1.700;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2303,255,0 chrX 52036 . C A 2306 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.29;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2339,249,0 chrX 52393 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.11;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1730,177,0 chrX 52757 . C T 1294 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1327,138,0 chrX 52825 . C T 1536 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1569,162,0 chrX 52905 . T A 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.648;QD=25.40;ReadPosRankSum=2.921;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:3,86:89:99:2319,234,0 chrX 52932 . T C 1970 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.26;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2003,213,0 chrX 53177 . G A 3009 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.9650;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.34;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3042,321,0 chrX 53312 . A G 4349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=176;Dels=0.00;FS=4.482;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.896;QD=24.71;ReadPosRankSum=1.692;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:4349,463,0 chrX 53513 . A T 5567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=227;Dels=0.00;FS=3.413;HaplotypeScore=13.0249;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.950;QD=24.52;ReadPosRankSum=1.717;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:5567,574,0 chrX 53550 . G A 4933.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=20.73;SB=-3.289e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:4933,508,0 chrX 53568 . G A 4692.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=20.40;SB=-2.998e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4692,490,0 chrX 53592 . T C 4570.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=18.13;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:4570,501,0 chrX 53601 . A C 4700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=247;Dels=0.00;FS=2.813;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=0.125;QD=19.03;ReadPosRankSum=2.429;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:2,243:247:99:4700,507,0 chrX 53842 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.709;QD=24.97;ReadPosRankSum=1.709;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3721,390,0 chrX 53946 . A T 3594.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=26.04;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3594,370,0 chrX 54232 . C G 3797.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.18;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,152:157:99:3797,414,0 chrX 54266 . C T 3892.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.63;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3892,403,0 chrX 54420 . T C 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.102;QD=23.86;ReadPosRankSum=1.712;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4057,432,0 chrX 54825 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:3012,309,0 chrX 54948 . G A 2247 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.20;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2280,234,0 chrX 54960 . A G 2031 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.91;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2064,222,0 chrX 54990 . G A 2402 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.6887;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.26;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2435,252,0 chrX 55276 . A T 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=127;Dels=0.00;FS=6.699;HaplotypeScore=7.9512;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.223;QD=24.97;ReadPosRankSum=2.256;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:3204,325,0 chrX 55335 . C T 4337.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.97;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4337,448,0 chrX 55616 . C T 5837.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-3.155e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5837,601,0 chrX 56022 . G A 3593.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.48;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3593,372,0 chrX 56320 . G A 469 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.17;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:51:502,51,0 chrX 56611 . T C 3363.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.7287;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3363,360,0 chrX 56789 . A G 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=160;Dels=0.00;FS=3.206;HaplotypeScore=16.1517;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.318;QD=23.97;ReadPosRankSum=1.710;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3835,420,0 chrX 56999 . G A 3153 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.68;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3186,336,0 chrX 57032 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=160;Dels=0.00;FS=6.382;HaplotypeScore=11.9337;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.223;QD=23.66;ReadPosRankSum=2.388;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3785,405,0 chrX 57144 . T C 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.756;DP=128;Dels=0.00;FS=5.866;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.291;QD=21.60;ReadPosRankSum=2.898;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:2798,294,0 chrX 57448 . T C 4184.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.47;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4184,442,0 chrX 57612 . T C 4382.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.08;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4382,466,0 chrX 57860 . A G 4955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=207;Dels=0.00;FS=4.239;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.197;QD=23.94;ReadPosRankSum=1.715;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4955,555,0 chrX 58022 . G A 4848.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.24;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4848,502,0 chrX 58040 . A G 4500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=230;Dels=0.00;FS=2.968;HaplotypeScore=11.3571;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=0.492;QD=19.57;ReadPosRankSum=2.395;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:2,225:230:99:4500,492,0 chrX 58196 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.30;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3366,366,0 chrX 58202 . C A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.98;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3294,340,0 chrX 58706 . T C 2931 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.72;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2964,327,0 chrX 58993 . A G 1068 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.36;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1101,120,0 chrX 59187 . T C 2576 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.60;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2609,282,0 chrX 59202 . A G 2472 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3644;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.89;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2505,267,0 chrX 59251 . T C 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-0.056;QD=23.15;ReadPosRankSum=1.704;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2904,309,0 chrX 59301 . T C 4547.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=25.98;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4547,486,0 chrX 59376 . C T 4624.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.1610;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=24.21;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4624,481,0 chrX 59485 . G T 3481.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=22.75;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3481,360,0 chrX 59496 . G A 3502.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=22.74;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3502,366,0 chrX 59610 . G A 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.440;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;MQRankSum=-0.382;QD=19.27;ReadPosRankSum=1.417;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3001,315,0 chrX 59645 . G T 948 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.85;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:981,114,0 chrX 59646 . T C 948 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;MQRankSum=1.689;QD=11.70;ReadPosRankSum=1.689;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:981,114,0 chrX 59648 . T A 1100 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=53.6101;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=13.58;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1133,117,0 chrX 59676 . A G 482 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=103.3915;MLEAC=2;MLEAF=1.00;MQ=30.02;MQ0=0;QD=3.98;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:63:515,63,0 chrX 59681 . T C 576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=125;Dels=0.00;FS=2.726;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=31.77;MQ0=0;MQRankSum=-1.736;QD=4.61;ReadPosRankSum=2.410;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:72:609,72,0 chrX 59703 . T C 1502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;MQRankSum=-1.513;QD=10.58;ReadPosRankSum=1.683;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:1535,177,0 chrX 59946 . G A 5294.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=11.1232;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=23.53;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5294,550,0 chrX 59967 . G A 5179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=2.6166;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.783;QD=23.54;ReadPosRankSum=0.973;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:5179,541,0 chrX 59991 . C T 5010.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.47;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5010,529,0 chrX 60178 . T A 5676.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=11.4594;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.07;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5676,589,0 chrX 60211 . T C 5406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=190.2743;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-1.070;QD=21.98;ReadPosRankSum=1.704;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:1,245:246:99:5406,574,0 chrX 60299 . C T 7147.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=9.2426;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.82;SB=-3.228e+03 GT:AD:DP:GQ:PL 1/1:0,300:300:99:7147,745,0 chrX 60425 . T C 6557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=281;Dels=0.00;FS=3.680;HaplotypeScore=12.8978;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=1.311;QD=23.33;ReadPosRankSum=1.720;SB=-3.146e+03 GT:AD:DP:GQ:PL 1/1:1,279:281:99:6557,709,0 chrX 60645 . A T 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=-1.070;QD=18.50;ReadPosRankSum=1.710;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2938,327,0 chrX 60675 . T A 1990 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=62.1419;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=15.19;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2023,213,0 chrX 60686 . T C 272.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.117;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=68.1199;MLEAC=1;MLEAF=0.500;MQ=43.39;MQ0=0;MQRankSum=-0.151;QD=2.01;ReadPosRankSum=-1.371;SB=-1.440e+02 GT:AD:DP:GQ:PL 0/1:98,33:135:99:302,0,222 chrX 60842 . T A 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=0.287;QD=21.31;ReadPosRankSum=1.707;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2995,321,0 chrX 60843 . C T 2900 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.71;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2933,321,0 chrX 60979 . T A 4296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=3.622;HaplotypeScore=15.0895;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.663;QD=24.55;ReadPosRankSum=1.712;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4296,439,0 chrX 61050 . A G 4342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=176;Dels=0.00;FS=8.561;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-1.124;QD=24.67;ReadPosRankSum=2.352;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4342,457,0 chrX 61449 . A G 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=234;Dels=0.00;FS=2.808;HaplotypeScore=17.9025;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.006;QD=20.20;ReadPosRankSum=2.428;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:2,231:234:99:4726,513,0 chrX 61584 . A G 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=0.620;QD=22.34;ReadPosRankSum=1.711;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3641,393,0 chrX 61680 . C T 4272.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.69;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:4272,436,0 chrX 61713 . G A 4408.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=25.05;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4408,457,0 chrX 61814 . G A 4029.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.5838;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=23.02;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4029,424,0 chrX 61827 . C T 3874.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.89;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3874,403,0 chrX 61893 . T C 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=174;Dels=0.00;FS=7.946;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-0.487;QD=21.07;ReadPosRankSum=2.393;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3667,379,0 chrX 61926 . T A 3831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=175;Dels=0.00;FS=5.330;HaplotypeScore=12.8703;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.637;QD=21.89;ReadPosRankSum=1.712;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3831,400,0 chrX 61974 . A T 3806.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.00;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3806,399,0 chrX 61995 . C T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.70;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3726,385,0 chrX 62016 . A G 3959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=201;Dels=0.00;FS=5.694;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=1.157;QD=19.70;ReadPosRankSum=2.945;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:3,196:201:99:3959,417,0 chrX 62065 . T C 3558.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.1005;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.05;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3558,378,0 chrX 62571 . A G 6483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=301;Dels=0.00;FS=3.817;HaplotypeScore=13.2264;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.698;QD=21.54;ReadPosRankSum=1.686;SB=-3.235e+03 GT:AD:DP:GQ:PL 1/1:1,300:301:99:6483,723,0 chrX 62857 . A G 6147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=268;Dels=0.00;FS=3.842;HaplotypeScore=24.7707;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.052;QD=22.94;ReadPosRankSum=1.719;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:1,263:268:99:6147,669,0 chrX 63405 . T C 4833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=241;Dels=0.00;FS=7.421;HaplotypeScore=20.6981;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.303;QD=20.05;ReadPosRankSum=2.378;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:2,237:241:99:4833,505,0 chrX 63597 . C T 3693.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.3638;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.38;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3693,379,0 chrX 63649 . T A 3738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.770;DP=153;Dels=0.00;FS=9.379;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.783;QD=24.43;ReadPosRankSum=2.888;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3738,382,0 chrX 63875 . G A 6195.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=10.6608;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.98;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:6195,643,0 chrX 64093 . A C 5392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=16.1894;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.030;QD=23.04;ReadPosRankSum=1.687;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,231:234:99:5392,577,0 chrX 64516 . A G 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.7565;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.833;QD=24.10;ReadPosRankSum=1.713;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4362,462,0 chrX 64611 . G T 4252.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.98;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4252,459,0 chrX 65007 . C T 4474.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.3937;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.32;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4474,480,0 chrX 65469 . G A 3774.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.7592;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.83;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,148:152:99:3774,394,0 chrX 65790 . T C 3688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=161;Dels=0.00;FS=8.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.484;QD=22.91;ReadPosRankSum=2.419;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3688,396,0 chrX 66129 . T C 4811.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.46;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4811,519,0 chrX 66255 . T C 3751.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.8866;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3751,417,0 chrX 66363 . A T 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.727;DP=139;Dels=0.00;FS=7.973;HaplotypeScore=15.9379;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.944;QD=23.03;ReadPosRankSum=3.783;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:5,134:139:99:3234,348,0 chrX 66411 . A G 3641.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.3476;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.46;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3641,384,0 chrX 67074 . T A 3801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=166;Dels=0.00;FS=3.116;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.377;QD=22.90;ReadPosRankSum=1.565;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3801,402,0 chrX 67229 . A T 4671.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.2808;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.11;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4671,490,0 chrX 67354 . C T 4090.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.51;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4090,441,0 chrX 67631 . C A 1970 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=22.64;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2003,210,0 chrX 67654 . C T 1492 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=18.42;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1525,159,0 chrX 67660 . T C 1285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=-1.601;QD=16.27;ReadPosRankSum=1.688;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1318,144,0 chrX 67686 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.08;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1731,180,0 chrX 67836 . A T 3313.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.36;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3313,348,0 chrX 67907 . A C 4962.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=25.98;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4962,532,0 chrX 68090 . T C 9093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=351;Dels=0.00;FS=5.214;HaplotypeScore=16.8262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.007;QD=25.91;ReadPosRankSum=3.348;SB=-3.731e+03 GT:AD:DP:GQ:PL 1/1:4,347:351:99:9093,958,0 chrX 68514 . T C 3752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=157;Dels=0.00;FS=4.551;HaplotypeScore=15.0404;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.170;QD=23.90;ReadPosRankSum=1.687;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:1,153:157:99:3752,396,0 chrX 68611 . G A 3916.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.02;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3916,403,0 chrX 68934 . C G 5389.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.0609;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.83;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5389,559,0 chrX 69580 . A G 4955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=206;Dels=0.00;FS=6.085;HaplotypeScore=11.6325;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.719;QD=24.05;ReadPosRankSum=2.342;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4955,526,0 chrX 69760 . G A 4145.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.17;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4145,450,0 chrX 69814 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=3.628;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.563;QD=21.45;ReadPosRankSum=1.711;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3560,396,0 chrX 69957 . A G 4761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=192;Dels=0.00;FS=3.802;HaplotypeScore=18.9283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.335;QD=24.80;ReadPosRankSum=1.714;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4761,496,0 chrX 70072 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.78;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3484,372,0 chrX 71179 . G A 2858 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.43;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2891,306,0 chrX 71182 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=21.87;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2767,303,0 chrX 71299 . T A 2292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=160;Dels=0.02;FS=2.998;HaplotypeScore=42.4326;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.515;QD=14.32;ReadPosRankSum=2.386;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:2325,240,0 chrX 71578 . C T 4254.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.59;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4254,442,0 chrX 71692 . A T 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=137;Dels=0.00;FS=6.378;HaplotypeScore=11.0703;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.170;QD=22.82;ReadPosRankSum=2.396;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3159,330,0 chrX 71752 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.65;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3303,340,0 chrX 73368 . G A 5159.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.24;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5159,532,0 chrX 73391 . T C 4026.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.24;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4026,435,0 chrX 73580 . G T 4282.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.92;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4282,448,0 chrX 73708 . C A 3444.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.1037;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.14;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3444,355,0 chrX 74010 . T A 2693 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2726,279,0 chrX 74077 . T C 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=149;Dels=0.00;FS=6.595;HaplotypeScore=5.9266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.674;QD=24.16;ReadPosRankSum=2.384;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3600,390,0 chrX 74362 . A C 7425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=303;Dels=0.00;FS=3.845;HaplotypeScore=17.6052;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.212;QD=24.50;ReadPosRankSum=1.721;SB=-3.474e+03 GT:AD:DP:GQ:PL 1/1:1,302:303:99:7425,793,0 chrX 74421 . G A 7217.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=17.5517;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.98;SB=-3.197e+03 GT:AD:DP:GQ:PL 1/1:0,301:301:99:7217,739,0 chrX 74530 . G A 4537.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.52;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:4537,475,0 chrX 74755 . C A 1883 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1916,198,0 chrX 74905 . G A 4382.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.1806;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.05;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4382,448,0 chrX 75066 . G A 5132.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.5010;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=24.56;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:5132,552,0 chrX 75337 . A T 3063 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=0;MQRankSum=-1.434;QD=20.28;ReadPosRankSum=1.663;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3096,321,0 chrX 75340 . C T 3045 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.37;MQ0=0;QD=21.15;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3078,318,0 chrX 75343 . G C 2799 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.81;MQ0=0;QD=19.85;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2832,309,0 chrX 75366 . C G 2274 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;QD=17.77;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2307,258,0 chrX 75369 . A T 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;MQRankSum=0.341;QD=18.42;ReadPosRankSum=1.627;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2465,258,0 chrX 75537 . G A 2073 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=20.13;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2106,222,0 chrX 75553 . A C 1893 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=17.05;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:1926,216,0 chrX 75559 . T G 2042 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=18.23;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2075,225,0 chrX 75669 . C T 3394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.148;QD=26.31;ReadPosRankSum=1.168;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3394,354,0 chrX 75699 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8333;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.43;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2189,240,0 chrX 75961 . A T 2174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=91;Dels=0.00;FS=4.819;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.313;QD=23.89;ReadPosRankSum=1.656;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2207,228,0 chrX 76073 . A G 3627.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3627,384,0 chrX 76157 . G C 4272.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.43;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:4272,456,0 chrX 76314 . C A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3508,361,0 chrX 76676 . T C 1151 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-1.319;QD=19.51;ReadPosRankSum=2.367;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1184,135,0 chrX 76677 . T C 1235 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-1.097;QD=20.58;ReadPosRankSum=1.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1268,135,0 chrX 76744 . C G 847 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=17.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:93:880,93,0 chrX 76747 . A G 812 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=14.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:96:845,96,0 chrX 76842 . C T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.9310;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.01;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3752,393,0 chrX 77140 . T G 4502.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.2215;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.69;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4502,480,0 chrX 77203 . A G 3732.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3732,393,0 chrX 77343 . A G 4385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=208;Dels=0.00;FS=2.968;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.575;QD=21.08;ReadPosRankSum=2.414;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:2,205:208:99:4385,466,0 chrX 77355 . A G 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=0.318;QD=22.18;ReadPosRankSum=1.697;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4347,457,0 chrX 77571 . C T 3057 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.8634;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.94;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3090,330,0 chrX 77583 . C T 2662 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.72;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2695,294,0 chrX 77730 . G A 3606.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.04;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3606,376,0 chrX 78222 . A G 4318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=208;Dels=0.00;FS=5.662;HaplotypeScore=15.9008;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=0.638;QD=20.76;ReadPosRankSum=2.870;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:4318,465,0 chrX 78273 . A G 5306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=236;Dels=0.00;FS=5.891;HaplotypeScore=18.2034;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-2.189;QD=22.48;ReadPosRankSum=2.936;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:3,231:236:99:5306,559,0 chrX 78486 . G C 4070.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.31;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:4070,447,0 chrX 78942 . A G 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.363;DP=164;Dels=0.00;FS=9.073;HaplotypeScore=9.5400;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=-2.698;QD=20.82;ReadPosRankSum=3.406;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:4,159:164:99:3414,363,0 chrX 78981 . C T 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.867;DP=168;Dels=0.00;FS=12.393;HaplotypeScore=138.4159;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;MQRankSum=4.404;QD=8.24;ReadPosRankSum=-8.601;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:64,104:168:99:1418,121,0 chrX 79092 . G A 4777.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.08;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4777,508,0 chrX 79609 . C A 3326.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=22.78;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3326,348,0 chrX 79642 . A G 2307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=4.578;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;MQRankSum=0.157;QD=17.48;ReadPosRankSum=1.680;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2340,258,0 chrX 79647 . T C 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=0.266;QD=16.28;ReadPosRankSum=1.679;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2166,237,0 chrX 79806 . C T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=23.30;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3612,378,0 chrX 79812 . G A 3171 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=20.86;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3204,330,0 chrX 79831 . T C 2273 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;QD=17.76;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2306,252,0 chrX 79835 . A C 2097 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=17.19;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2130,231,0 chrX 80055 . T A 2597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=1.341;QD=22.58;ReadPosRankSum=1.702;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2630,279,0 chrX 80077 . T G 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=120;Dels=0.00;FS=5.996;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=0.154;QD=20.50;ReadPosRankSum=2.924;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:3,115:120:99:2493,270,0 chrX 80094 . A T 2680 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=22.91;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2713,279,0 chrX 80102 . T G 2697 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.8664;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=21.24;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2730,297,0 chrX 80208 . A G 3866.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=21.72;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3866,426,0 chrX 80223 . T C 4279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.513;DP=200;Dels=0.00;FS=7.875;HaplotypeScore=8.5514;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.501;QD=21.40;ReadPosRankSum=3.811;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:5,195:200:99:4279,456,0 chrX 80358 . G A 3006 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=19.39;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3039,315,0 chrX 80359 . G A 3009 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=19.80;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3042,313,0 chrX 80433 . C T 4288.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=19.32;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4288,445,0 chrX 80439 . T C 3815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=217;Dels=0.00;FS=11.849;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;MQRankSum=-1.690;QD=17.58;ReadPosRankSum=2.968;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:3,214:217:99:3815,426,0 chrX 80595 . A G 3820.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=19.10;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3820,423,0 chrX 80604 . G A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=20.34;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:3945,409,0 chrX 80742 . G A 4323.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.75;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4323,445,0 chrX 80826 . G A 5173.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=24.29;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5173,541,0 chrX 81028 . A G 5680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=245;Dels=0.00;FS=11.364;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.602;QD=23.18;ReadPosRankSum=2.971;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:3,242:245:99:5680,615,0 chrX 81387 . C A 4911.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=20.4031;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.17;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4911,502,0 chrX 81603 . C T 3697.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.8526;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.11;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3697,393,0 chrX 81741 . A G 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=0.150;QD=20.74;ReadPosRankSum=2.410;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2584,279,0 chrX 81756 . G T 2214 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=19.42;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,107:114:99:2247,240,0 chrX 81757 . G A 2204 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=20.22;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2237,237,0 chrX 81758 . G A 2229 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=20.45;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2262,237,0 chrX 81876 . G A 2164 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.04;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2197,234,0 chrX 81986 . T C 2234 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=23.52;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2267,252,0 chrX 82182 . A G 2893 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.52;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2926,312,0 chrX 82254 . C A 3164 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3197,333,0 chrX 82641 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.59;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2796,297,0 chrX 82787 . A G 4063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-1.362;QD=22.70;ReadPosRankSum=1.693;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4063,427,0 chrX 82809 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.163;DP=172;Dels=0.00;FS=9.112;HaplotypeScore=8.0614;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-1.497;QD=21.00;ReadPosRankSum=3.378;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:4,167:172:99:3612,390,0 chrX 82983 . G A 4359.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.77;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4359,448,0 chrX 83220 . T C 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=138;Dels=0.00;FS=3.690;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.025;QD=23.32;ReadPosRankSum=1.707;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3251,339,0 chrX 83271 . G C 3513.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.23;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3513,367,0 chrX 83298 . G A 3839.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.27;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3839,394,0 chrX 83388 . G A 4775.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.2469;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.67;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4775,490,0 chrX 83621 . G A 6238.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=17.7003;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.36;SB=-3.659e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:6238,652,0 chrX 83777 . C T 4676.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.8713;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.59;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4676,481,0 chrX 83798 . C T 4650.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.2996;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.04;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4650,487,0 chrX 84252 . C T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.50;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3567,370,0 chrX 84310 . C T 4311.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=16.7105;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.81;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4311,445,0 chrX 84655 . T C 4607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.358;QD=26.03;ReadPosRankSum=1.693;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4607,487,0 chrX 84895 . A G 4245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.6997;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-1.220;QD=21.44;ReadPosRankSum=1.697;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4245,456,0 chrX 84907 . A G 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=203;Dels=0.00;FS=6.626;HaplotypeScore=16.1605;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=0.531;QD=19.81;ReadPosRankSum=2.376;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:2,199:203:99:4022,444,0 chrX 85185 . A G 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.087;QD=20.84;ReadPosRankSum=2.410;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3835,411,0 chrX 85264 . C T 3506.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3506,378,0 chrX 85454 . A G 1648 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=27.93;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1681,171,0 chrX 85483 . G T 2081 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=25.69;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2114,216,0 chrX 85607 . G C 1966 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=19.27;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1999,228,0 chrX 85615 . T C 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=0.858;QD=20.17;ReadPosRankSum=1.700;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2191,237,0 chrX 85656 . T A 2213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=114;Dels=0.00;FS=2.915;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=-0.982;QD=19.41;ReadPosRankSum=2.342;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2246,231,0 chrX 85674 . G A 2273 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.79;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2306,240,0 chrX 85785 . T C 3793.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8276;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.63;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3793,420,0 chrX 85818 . T C 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.6360;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.525;QD=23.22;ReadPosRankSum=1.687;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3622,384,0 chrX 85894 . C T 3370.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.3544;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.74;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3370,360,0 chrX 86001 . T G 4399.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.30;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4399,474,0 chrX 86057 . A T 2373 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.19;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2406,246,0 chrX 86090 . T C 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.203;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.2939;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.077;QD=23.71;ReadPosRankSum=1.451;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2688,279,0 chrX 86238 . T C 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=97;Dels=0.00;FS=4.416;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.216;QD=18.77;ReadPosRankSum=1.695;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,93:97:99:1854,201,0 chrX 86328 . A T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.77;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3866,397,0 chrX 86351 . G A 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.080;QD=24.23;ReadPosRankSum=-0.310;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,150:155:99:3756,365,0 chrX 86417 . G A 3114 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.95;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3147,322,0 chrX 86567 . G A 4498.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.19;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4498,472,0 chrX 86690 . C T 3387.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.90;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3387,349,0 chrX 86865 . C T 3489.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=25.65;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3489,363,0 chrX 87115 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=17.97;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:3070,330,0 chrX 87124 . T C 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.3924;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-0.307;QD=20.21;ReadPosRankSum=1.712;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3557,378,0 chrX 87216 . C A 5339.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.6975;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5339,556,0 chrX 87516 . T G 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.7310;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.708;QD=22.11;ReadPosRankSum=1.684;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,144:149:99:3294,357,0 chrX 87878 . T C 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.551;QD=23.54;ReadPosRankSum=2.359;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3234,342,0 chrX 87904 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.68;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2873,309,0 chrX 87972 . G C 3218.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.0037;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.84;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3251,345,0 chrX 88033 . T C 5621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.272;DP=232;Dels=0.00;FS=12.541;HaplotypeScore=13.3431;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.879;QD=24.23;ReadPosRankSum=2.283;SB=-3.035e+03 GT:AD:DP:GQ:PL 1/1:4,228:232:99:5621,578,0 chrX 88209 . G A 4225.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.01;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4225,433,0 chrX 88473 . G A 3866.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.47;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3866,397,0 chrX 88506 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=24.06;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3561,367,0 chrX 88580 . G A 2801 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.32;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2834,294,0 chrX 88585 . C T 2768 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.09;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2801,294,0 chrX 88714 . T C 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.477;QD=24.37;ReadPosRankSum=1.707;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3339,372,0 chrX 88837 . A G 3610.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.1203;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.79;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3610,393,0 chrX 89050 . G A 1753 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1786,183,0 chrX 89089 . C T 910 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,41:43:99:943,102,0 chrX 89149 . C T 881 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:914,93,0 chrX 89204 . G A 482 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=5.3061;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.91;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:54:515,54,0 chrX 89270 . C G 1128 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.56;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1161,135,0 chrX 89312 . G A 2198 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=27.47;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2231,231,0 chrX 89346 . T C 2444 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.9436;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.20;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2477,267,0 chrX 89438 . G A 2927 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2960,303,0 chrX 89544 . C T 4529.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.7407;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.84;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4529,469,0 chrX 89645 . A G 4635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=201;Dels=0.00;FS=6.909;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.678;QD=23.06;ReadPosRankSum=2.388;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4635,501,0 chrX 89840 . G A 4325.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.13;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4325,451,0 chrX 89888 . T A 5009.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.5585;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=23.97;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5009,517,0 chrX 89907 . T G 4517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=204;Dels=0.00;FS=6.712;HaplotypeScore=6.6615;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.454;QD=22.14;ReadPosRankSum=2.389;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4517,484,0 chrX 90035 . G C 3817.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.7769;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=22.86;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3817,417,0 chrX 90197 . G C 3567.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=22.72;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3567,384,0 chrX 90241 . C A 2789 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=6.0611;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.51;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2822,303,0 chrX 90254 . G A 2940 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.9686;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.85;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2973,309,0 chrX 90357 . G C 3991.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.42;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3991,438,0 chrX 90410 . G C 4227.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.25;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4227,456,0 chrX 90432 . T A 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.4164;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.483;QD=21.97;ReadPosRankSum=1.692;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3822,400,0 chrX 90461 . A C 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=7.794;HaplotypeScore=10.6114;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.282;QD=19.99;ReadPosRankSum=2.125;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2911,312,0 chrX 90680 . T G 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.933;QD=23.52;ReadPosRankSum=1.708;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3410,357,0 chrX 91221 . C T 2492 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.19;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2525,264,0 chrX 91264 . A G 2118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.695;QD=21.84;ReadPosRankSum=1.253;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,93:97:99:2151,228,0 chrX 91365 . A C 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.613;DP=116;Dels=0.00;FS=3.321;HaplotypeScore=8.3384;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.702;QD=24.37;ReadPosRankSum=1.105;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2860,309,0 chrX 91730 . G A 349 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.27;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:39:382,39,0 chrX 91804 . A T 78.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.668;DP=13;Dels=0.00;FS=5.119;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.401;QD=6.04;ReadPosRankSum=1.470;SB=-5.439e+01 GT:AD:DP:GQ:PL 1/1:1,12:13:12:111,12,0 chrX 91817 . A T 195.03 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.25;SB=-5.703e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:228,24,0 chrX 92206 . C T 3176 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3209,336,0 chrX 92512 . G A 3535.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.05;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3535,387,0 chrX 92630 . G A 4291.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.0376;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.39;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4291,456,0 chrX 92932 . T C 3947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=171;Dels=0.00;FS=3.034;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=2.030;QD=23.08;ReadPosRankSum=2.392;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3947,417,0 chrX 92996 . C T 3706.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=23.76;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3706,385,0 chrX 93007 . G A 3424.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.38;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3424,355,0 chrX 93121 . G T 2849 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.09;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2882,300,0 chrX 93286 . C T 3546.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.1890;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.88;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3546,370,0 chrX 93538 . G A 3792.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.70;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3792,402,0 chrX 93585 . G A 3595.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.29;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3595,372,0 chrX 93751 . C T 4574.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.2199;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.72;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4574,469,0 chrX 93782 . A G 4934.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.3849;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.50;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4934,529,0 chrX 93827 . G A 5907.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=13.7482;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=25.68;SB=-2.826e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5907,598,0 chrX 93919 . G T 5426.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.51;SB=-3.214e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5426,565,0 chrX 94118 . T C 6717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=14.5188;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.513;QD=24.79;ReadPosRankSum=1.706;SB=-3.201e+03 GT:AD:DP:GQ:PL 1/1:1,269:271:99:6717,715,0 chrX 94327 . A G 9586.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=438;Dels=0.00;FS=13.929;HaplotypeScore=12.1822;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.555;QD=21.89;ReadPosRankSum=2.984;SB=-4.010e+03 GT:AD:DP:GQ:PL 1/1:3,432:438:99:9586,1074,0 chrX 94353 . C T 10331.01 filter AC=2;AF=1.00;AN=2;DP=463;Dels=0.00;FS=0.000;HaplotypeScore=18.5699;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.31;SB=-4.278e+03 GT:AD:DP:GQ:PL 1/1:0,461:463:99:10331,1084,0 chrX 94501 . C T 8925.01 filter AC=2;AF=1.00;AN=2;DP=403;Dels=0.00;FS=0.000;HaplotypeScore=25.6940;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.15;SB=-4.755e+03 GT:AD:DP:GQ:PL 1/1:0,401:403:99:8925,925,0 chrX 94749 . A T 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=175;Dels=0.00;FS=2.900;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-0.948;QD=23.49;ReadPosRankSum=2.422;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4110,436,0 chrX 94776 . G A 4383.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.70;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4383,468,0 chrX 94846 . A G 4207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.202;DP=216;Dels=0.00;FS=5.237;HaplotypeScore=16.8534;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.602;QD=19.48;ReadPosRankSum=3.371;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:4,212:216:99:4207,462,0 chrX 95089 . A G 5624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=229;Dels=0.00;FS=7.723;HaplotypeScore=10.8661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.264;QD=24.56;ReadPosRankSum=2.428;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:2,226:229:99:5624,601,0 chrX 95205 . T C 7029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=15.1595;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.759;QD=24.07;ReadPosRankSum=1.720;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:1,291:292:99:7029,768,0 chrX 95565 . T C 5190.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.4884;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.63;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,236:240:99:5190,556,0 chrX 95814 . A G 4908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=227;Dels=0.00;FS=2.533;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.748;QD=21.62;ReadPosRankSum=2.925;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:3,224:227:99:4908,523,0 chrX 96194 . C T 3811.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.65;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3811,391,0 chrX 96324 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=147;Dels=0.00;FS=7.280;HaplotypeScore=12.0783;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.060;QD=21.88;ReadPosRankSum=2.246;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:3249,351,0 chrX 96365 . C A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=20.31;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:3737,385,0 chrX 96379 . C T 3790.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.6530;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.54;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3790,394,0 chrX 96425 . C T 4297.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.9324;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.36;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4297,439,0 chrX 96464 . C T 4131.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.70;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4131,427,0 chrX 96721 . C T 1981 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=18.69;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2014,222,0 chrX 96724 . C T 2148 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.35;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2181,240,0 chrX 96768 . T C 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=10.099;HaplotypeScore=11.0076;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.326;QD=19.28;ReadPosRankSum=1.680;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2616,282,0 chrX 96890 . G T 2696 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=23.44;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2729,282,0 chrX 96894 . T A 2641 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=22.97;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2674,282,0 chrX 96902 . A G 2422 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=19.53;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2455,282,0 chrX 96954 . A G 2224 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=20.22;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2257,240,0 chrX 97036 . G A 2703 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=25.99;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2736,279,0 chrX 97063 . C T 3135 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=23.22;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3168,324,0 chrX 97211 . C T 3492.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=23.76;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3492,372,0 chrX 97232 . C T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.29;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3377,351,0 chrX 97325 . C T 4248.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.7335;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.73;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4248,442,0 chrX 97369 . A G 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.701;DP=159;Dels=0.00;FS=6.070;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.962;QD=21.96;ReadPosRankSum=2.917;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:3,155:159:99:3492,375,0 chrX 97454 . T C 4660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.207;QD=23.54;ReadPosRankSum=1.697;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4660,501,0 chrX 97478 . G A 4153.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.52;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4153,450,0 chrX 98106 . C T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.2017;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.87;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3590,370,0 chrX 98630 . T C 8244.01 PASS AC=2;AF=1.00;AN=2;DP=359;Dels=0.00;FS=0.000;HaplotypeScore=27.0833;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.96;SB=-4.013e+03 GT:AD:DP:GQ:PL 1/1:0,357:359:99:8244,895,0 chrX 98678 . A G 7903.01 filter AC=2;AF=1.00;AN=2;DP=383;Dels=0.00;FS=0.000;HaplotypeScore=35.4093;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.63;SB=-3.640e+03 GT:AD:DP:GQ:PL 1/1:0,380:383:99:7903,864,0 chrX 98875 . C G 5642.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=9.4568;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.51;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:1,236:240:99:5642,607,0 chrX 98930 . C T 5666.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=17.6466;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.13;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,251:256:99:5666,607,0 chrX 99116 . G C 4385.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.77;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4385,460,0 chrX 99725 . A G 3776.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.9839;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=26.04;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3776,411,0 chrX 99851 . G T 5372.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=23.7517;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.46;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5372,562,0 chrX 99905 . A T 5533.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.87;SB=-3.229e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5533,574,0 chrX 99929 . A G 4875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=264;Dels=0.00;FS=5.980;HaplotypeScore=2.9453;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-0.616;QD=18.47;ReadPosRankSum=2.973;SB=-3.016e+03 GT:AD:DP:GQ:PL 1/1:3,261:264:99:4875,534,0 chrX 99941 . A G 4591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.287;DP=261;Dels=0.00;FS=8.873;HaplotypeScore=2.7675;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;MQRankSum=0.794;QD=17.59;ReadPosRankSum=3.360;SB=-3.201e+03 GT:AD:DP:GQ:PL 1/1:4,256:261:99:4591,486,0 chrX 99962 . G A 4030.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=10.8573;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=15.74;SB=-3.264e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:4030,421,0 chrX 100283 . C T 6448.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=39.7101;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.24;SB=-2.928e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6448,667,0 chrX 101180 . A G 3288.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.22;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3288,363,0 chrX 101201 . G A 3778.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.9820;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=23.18;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3778,394,0 chrX 101236 . C T 3588.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.71;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3588,375,0 chrX 101464 . T G 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=196;Dels=0.00;FS=3.578;HaplotypeScore=13.4618;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.184;QD=20.94;ReadPosRankSum=1.697;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4104,436,0 chrX 101653 . C T 4191.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.81;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4191,442,0 chrX 101806 . T G 4233.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.64;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4233,456,0 chrX 102363 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.19;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3073,315,0 chrX 102662 . A G 3777.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.46;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3777,411,0 chrX 103284 . T C 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.8989;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.490;QD=23.09;ReadPosRankSum=1.951;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3325,369,0 chrX 103352 . A G 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=3.034;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.156;QD=23.48;ReadPosRankSum=2.321;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3179,345,0 chrX 103478 . T C 4085.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4085,427,0 chrX 103601 . A G 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=176;Dels=0.00;FS=6.663;HaplotypeScore=12.0526;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.808;QD=22.45;ReadPosRankSum=2.380;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3952,435,0 chrX 103753 . T G 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=3.089;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.006;QD=23.85;ReadPosRankSum=1.711;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:4006,426,0 chrX 104552 . C T 3573.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.1049;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.89;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3573,370,0 chrX 104563 . C T 3085 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.5261;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.28;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,154:160:99:3118,324,0 chrX 104790 . C T 2117 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.17;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2150,228,0 chrX 105170 . C T 6257.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.29;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:6257,640,0 chrX 105262 . C T 5626.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=16.1394;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.64;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5626,598,0 chrX 105490 . G A 5702.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.68;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5702,589,0 chrX 105565 . G A 4902.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.63;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4902,505,0 chrX 105643 . C T 4840.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.5670;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.72;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4840,514,0 chrX 105664 . G A 4641.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.0818;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.89;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4641,484,0 chrX 105718 . C T 4144.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.90;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4144,421,0 chrX 105829 . G A 4762.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.6249;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.93;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4762,502,0 chrX 106172 . G A 2167 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.34;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2200,222,0 chrX 106245 . T C 1972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=97;Dels=0.00;FS=2.977;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.038;QD=20.33;ReadPosRankSum=2.297;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2005,216,0 chrX 106326 . G A 1833 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.81;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1866,201,0 chrX 106721 . T A 2071 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.08;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2104,213,0 chrX 106893 . T C 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=106;Dels=0.01;FS=4.746;HaplotypeScore=4.3494;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.895;QD=22.43;ReadPosRankSum=3.754;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:5,100:105:99:2411,233,0 chrX 106919 . T G 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.319;QD=25.56;ReadPosRankSum=2.384;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2896,306,0 chrX 107092 . A G 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=149;Dels=0.00;FS=3.033;HaplotypeScore=9.5413;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.805;QD=23.71;ReadPosRankSum=2.350;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3533,393,0 chrX 107239 . C T 3033 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=24.66;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3066,318,0 chrX 107257 . T C 2709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=120;Dels=0.00;FS=2.986;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-0.615;QD=22.57;ReadPosRankSum=2.387;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:2,116:120:99:2742,303,0 chrX 107323 . A G 3312.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.93;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3312,351,0 chrX 107397 . A G 4909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=194;Dels=0.00;FS=3.291;HaplotypeScore=17.5034;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.335;QD=25.30;ReadPosRankSum=1.696;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:4909,511,0 chrX 107470 . T C 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=1.072;QD=20.96;ReadPosRankSum=1.691;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3522,375,0 chrX 107485 . C T 3395.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.05;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3395,351,0 chrX 107518 . C T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.04;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3451,366,0 chrX 107557 . A G 3740.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.52;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3740,399,0 chrX 107689 . G T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3441;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.54;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3861,411,0 chrX 107980 . A G 4366.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.40;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4366,465,0 chrX 108091 . A G 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.0791;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.071;QD=19.54;ReadPosRankSum=1.697;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3830,411,0 chrX 108143 . A G 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=187;Dels=0.00;FS=2.921;HaplotypeScore=11.0065;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.601;QD=20.57;ReadPosRankSum=2.410;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:3846,408,0 chrX 108247 . C T 3503.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=22.17;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3503,361,0 chrX 108259 . C T 3316.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=22.71;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3316,345,0 chrX 108466 . A G 3513.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=23.11;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3513,366,0 chrX 108616 . C T 5547.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.9826;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.29;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5547,577,0 chrX 108712 . A G 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=177;Dels=0.00;FS=7.991;HaplotypeScore=5.7316;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=-1.545;QD=20.24;ReadPosRankSum=1.811;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:4,173:177:99:3583,375,0 chrX 108722 . C T 3576.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.3054;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.92;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3576,372,0 chrX 108741 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=18.82;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3651,379,0 chrX 108784 . G A 4312.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.8330;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=18.91;SB=-2.964e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:4312,459,0 chrX 108904 . A G 5747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=239;Dels=0.00;FS=3.217;HaplotypeScore=17.1680;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-1.191;QD=24.05;ReadPosRankSum=1.717;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:1,236:239:99:5747,619,0 chrX 108954 . G T 4567.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.96;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4567,466,0 chrX 109213 . T C 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.684;QD=25.54;ReadPosRankSum=1.708;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3703,396,0 chrX 109481 . T A 1036 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.18;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1069,111,0 chrX 109567 . A G 2516 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.2365;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2549,267,0 chrX 109687 . T A 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7904;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-0.752;QD=24.69;ReadPosRankSum=1.634;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2650,282,0 chrX 110560 . G A 3615.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.10;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3615,373,0 chrX 110608 . G A 3200 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.43;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3233,331,0 chrX 110637 . A G 3172 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.59;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3205,333,0 chrX 110860 . C T 3653.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.19;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3653,379,0 chrX 110925 . T C 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.5772;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.402;QD=23.27;ReadPosRankSum=1.650;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3910,414,0 chrX 111001 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=143;Dels=0.00;FS=5.553;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.922;QD=22.54;ReadPosRankSum=2.951;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3256,351,0 chrX 111089 . T G 3318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.721;DP=164;Dels=0.00;FS=16.154;HaplotypeScore=10.3630;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.836;QD=20.23;ReadPosRankSum=3.788;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:5,159:164:99:3318,357,0 chrX 111416 . A C 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.336;DP=158;Dels=0.00;FS=1.458;HaplotypeScore=134.5846;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.768;QD=21.05;ReadPosRankSum=4.515;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:8,143:158:99:3326,363,0 chrX 111661 . T C 5316.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.72;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5316,585,0 chrX 111674 . C T 6189.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=4.8911;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=23.99;SB=-3.376e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:6189,652,0 chrX 111903 . C T 7124.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=19.1620;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=25.53;SB=-3.892e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:99:7124,718,0 chrX 112233 . C A 5333.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=23.09;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5333,568,0 chrX 112239 . A G 5178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.120;DP=233;Dels=0.00;FS=10.671;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.653;QD=22.22;ReadPosRankSum=4.176;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:6,227:233:99:5178,570,0 chrX 112473 . T C 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=187;Dels=0.00;FS=2.835;HaplotypeScore=11.9749;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.522;QD=24.46;ReadPosRankSum=2.397;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4574,481,0 chrX 112575 . A G 5816.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.29;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5816,616,0 chrX 112672 . G A 6355.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.80;SB=-3.168e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:6355,658,0 chrX 112731 . G A 7111.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=24.7427;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.86;SB=-3.697e+03 GT:AD:DP:GQ:PL 1/1:0,308:311:99:7111,742,0 chrX 112791 . T C 6434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=279;Dels=0.00;FS=3.006;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.471;QD=23.06;ReadPosRankSum=2.388;SB=-3.332e+03 GT:AD:DP:GQ:PL 1/1:2,277:279:99:6434,702,0 chrX 112938 . T A 4718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=265;Dels=0.00;FS=8.492;HaplotypeScore=9.8001;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-1.144;QD=17.80;ReadPosRankSum=2.412;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:2,263:265:99:4718,487,0 chrX 112965 . T C 4642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=228;Dels=0.00;FS=4.115;HaplotypeScore=6.0479;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.435;QD=20.36;ReadPosRankSum=1.335;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:4642,507,0 chrX 112991 . T C 5008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=226;Dels=0.00;FS=7.796;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.158;QD=22.16;ReadPosRankSum=2.384;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:2,223:226:99:5008,529,0 chrX 113461 . T C 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=4.357;HaplotypeScore=16.3060;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=0.962;QD=14.66;ReadPosRankSum=1.694;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,90:93:99:1396,150,0 chrX 113505 . G A 951 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=14.19;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:984,102,0 chrX 113667 . T C 849 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.21;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,41:42:93:882,93,0 chrX 113753 . A G 744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=39;Dels=0.00;FS=3.493;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.000;QD=19.08;ReadPosRankSum=1.641;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:1,37:39:84:777,84,0 chrX 113977 . T C 2191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.290;QD=23.31;ReadPosRankSum=1.695;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2224,240,0 chrX 114133 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0411;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3296,366,0 chrX 114174 . C G 2656 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2689,288,0 chrX 114214 . T C 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=140;Dels=0.00;FS=8.038;HaplotypeScore=10.5319;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.490;QD=22.44;ReadPosRankSum=2.414;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:3175,345,0 chrX 114298 . A G 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.1121;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.149;QD=22.12;ReadPosRankSum=2.377;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:2,168:172:99:3804,402,0 chrX 114582 . C T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=25.01;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3402,360,0 chrX 114631 . C T 3226.07 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=22.72;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3259,333,0 chrX 114825 . T C 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=155;Dels=0.00;FS=2.752;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;MQRankSum=0.582;QD=19.45;ReadPosRankSum=2.418;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3048,327,0 chrX 114831 . T G 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.277;DP=165;Dels=0.00;FS=5.233;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;MQRankSum=2.376;QD=17.60;ReadPosRankSum=3.406;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:4,159:165:99:2937,318,0 chrX 115225 . G A 4476.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.7775;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.73;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4476,457,0 chrX 115633 . A G 3986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=170;Dels=0.00;FS=8.392;HaplotypeScore=11.1534;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.629;QD=23.45;ReadPosRankSum=2.406;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3986,426,0 chrX 115680 . G C 3339.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3339,354,0 chrX 115900 . T C 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=94;Dels=0.00;FS=6.449;HaplotypeScore=4.2795;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;MQRankSum=-0.223;QD=22.44;ReadPosRankSum=2.397;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2142,228,0 chrX 116017 . A G 2575 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=20.28;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2608,279,0 chrX 116020 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=21.27;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2819,291,0 chrX 116041 . G A 2436 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=19.03;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2469,255,0 chrX 116066 . G A 2495 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=17.95;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2528,261,0 chrX 116153 . T G 3641.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=24.44;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3641,402,0 chrX 116264 . C T 4646.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.7203;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=25.25;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4646,484,0 chrX 116295 . C A 5041.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=22.50;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5041,529,0 chrX 116404 . T G 97.26 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=174.3411;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=0.49;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,190:197:15:130,15,0 chrX 116413 . G A 3976.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.98;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3976,429,0 chrX 116526 . A G 3369.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=17.73;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3369,360,0 chrX 116540 . C G 3272.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=16.61;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3272,351,0 chrX 116568 . T C 3707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=212;Dels=0.00;FS=3.928;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.973;QD=17.49;ReadPosRankSum=1.666;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:3707,405,0 chrX 116829 . C T 2981 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.76;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3014,312,0 chrX 116870 . C T 2388 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.9753;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=22.11;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2421,255,0 chrX 116906 . T G 2077 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.86;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2110,222,0 chrX 116916 . C T 1902 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.67;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1935,198,0 chrX 116986 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.94;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:69:99:1547,159,0 chrX 117039 . C A 1349 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.48;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1382,147,0 chrX 117075 . G A 1255 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9628;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.92;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1288,138,0 chrX 117184 . G C 2374 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.50;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2407,261,0 chrX 117559 . C T 3587.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,147:152:99:3587,370,0 chrX 117715 . C T 2196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.402;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.7046;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.699;QD=20.72;ReadPosRankSum=1.402;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2229,212,0 chrX 117792 . G A 2629 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=8.9721;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.47;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2662,279,0 chrX 117878 . G A 2044 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2077,213,0 chrX 118010 . G A 4563.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=27.16;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4563,469,0 chrX 118040 . G A 4530.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=25.45;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4530,460,0 chrX 118136 . C T 5250.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.44;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5250,553,0 chrX 118169 . T C 4986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=248;Dels=0.00;FS=3.452;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.523;QD=20.10;ReadPosRankSum=1.704;SB=-3.062e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:4986,538,0 chrX 118200 . C T 5691.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.97;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:5691,580,0 chrX 118265 . C T 5285.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=15.2842;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.02;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,262:264:99:5285,594,0 chrX 118277 . T A 5658.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=13.3554;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.73;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:5658,592,0 chrX 118419 . A G 5375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=227;Dels=0.00;FS=3.541;HaplotypeScore=17.3502;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.594;QD=23.68;ReadPosRankSum=1.717;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:5375,588,0 chrX 118625 . T C 6774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=14.4023;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.117;QD=24.11;ReadPosRankSum=1.707;SB=-3.791e+03 GT:AD:DP:GQ:PL 1/1:1,280:281:99:6774,715,0 chrX 118772 . A G 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.520;QD=21.80;ReadPosRankSum=1.674;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3924,426,0 chrX 118904 . G T 2519 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=16.7568;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.72;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2552,273,0 chrX 118988 . C T 2584 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=22.47;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2617,279,0 chrX 118997 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.58;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2450,261,0 chrX 119092 . A C 1364 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.99;MQ0=0;QD=12.87;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1397,147,0 chrX 119095 . A C 1304 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.30;MQ0=0;QD=11.96;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1337,141,0 chrX 119099 . A G 1133 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=4.286;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=0;MQRankSum=-1.669;QD=10.30;ReadPosRankSum=1.669;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:1166,126,0 chrX 119105 . A G 1259 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.54;MQ0=0;QD=11.04;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1292,141,0 chrX 119112 . C T 1451 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.73;MQ0=0;QD=12.73;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1484,159,0 chrX 119135 . A G 2418 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.0511;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;QD=16.68;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2451,270,0 chrX 119236 . T A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=24.38;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3437,366,0 chrX 119585 . T C 3676.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3676,393,0 chrX 119720 . A C 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.857;DP=121;Dels=0.00;FS=2.309;HaplotypeScore=16.4362;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.219;QD=19.14;ReadPosRankSum=2.303;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:3,117:121:99:2349,235,0 chrX 119845 . G A 4207.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.3057;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.37;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4207,456,0 chrX 119906 . G A 2992 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.2928;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.19;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3025,312,0 chrX 120106 . A T 3283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=146;Dels=0.00;FS=3.027;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.918;QD=22.49;ReadPosRankSum=2.416;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3283,348,0 chrX 120196 . G T 3182 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.06;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3215,342,0 chrX 120291 . T A 2232 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2265,240,0 chrX 120358 . A G 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.042;QD=23.51;ReadPosRankSum=1.704;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2972,318,0 chrX 120394 . T C 3085 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.73;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3118,336,0 chrX 120628 . A T 4325.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=22.41;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4325,448,0 chrX 120734 . A T 4087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.407;DP=241;Dels=0.00;FS=7.404;HaplotypeScore=22.6922;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;MQRankSum=1.967;QD=16.96;ReadPosRankSum=2.765;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:5,236:241:99:4087,435,0 chrX 120736 . C T 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.959;DP=240;Dels=0.00;FS=4.818;HaplotypeScore=14.2405;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;MQRankSum=3.066;QD=16.96;ReadPosRankSum=2.747;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:5,235:240:99:4070,424,0 chrX 120754 . G A 4583.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=1;QD=15.97;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,285:287:99:4583,483,0 chrX 120829 . T C 5313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.568;DP=329;Dels=0.00;FS=6.029;HaplotypeScore=18.3660;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;MQRankSum=1.605;QD=16.15;ReadPosRankSum=3.069;SB=-3.450e+03 GT:AD:DP:GQ:PL 1/1:7,319:329:99:5313,538,0 chrX 120868 . C T 1167.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.458;DP=259;Dels=0.00;FS=9.273;HaplotypeScore=12.6076;MLEAC=1;MLEAF=0.500;MQ=36.69;MQ0=0;MQRankSum=-3.716;QD=4.51;ReadPosRankSum=2.631;SB=-5.430e+02 GT:AD:DP:GQ:PL 0/1:160,98:259:99:1197,0,1625 chrX 120874 . C T 3460.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=6.8136;MLEAC=2;MLEAF=1.00;MQ=35.24;MQ0=0;MQRankSum=-0.483;QD=14.18;ReadPosRankSum=1.391;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:3460,372,0 chrX 120877 . T C 3088 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.284;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=4.6483;MLEAC=2;MLEAF=1.00;MQ=34.26;MQ0=0;MQRankSum=1.254;QD=13.25;ReadPosRankSum=1.195;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:3121,336,0 chrX 120886 . C T 2570 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.405;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.59;MQ0=0;MQRankSum=0.577;QD=12.79;ReadPosRankSum=0.595;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:2603,282,0 chrX 120887 . A G 2485 SnpCluster AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=12.68;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:2518,276,0 chrX 120925 . C T 580 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;QD=7.34;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:66:613,66,0 chrX 120943 . T C 346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.250;DP=63;Dels=0.00;FS=34.700;HaplotypeScore=22.1805;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=0;MQRankSum=-1.282;QD=5.49;ReadPosRankSum=3.915;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:13,50:63:42:379,42,0 chrX 120971 . G A 241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.456;DP=39;Dels=0.00;FS=5.006;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.40;MQ0=0;MQRankSum=-1.368;QD=6.18;ReadPosRankSum=-0.365;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:30:274,30,0 chrX 120973 . T C 264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.5623;MLEAC=2;MLEAF=1.00;MQ=32.34;MQ0=0;MQRankSum=-1.893;QD=6.44;ReadPosRankSum=2.327;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:33:297,33,0 chrX 120997 . C T 403 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.8245;MLEAC=2;MLEAF=1.00;MQ=34.45;MQ0=0;QD=6.61;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:48:436,48,0 chrX 121015 . T C 608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=74;Dels=0.00;FS=2.624;HaplotypeScore=7.2346;MLEAC=2;MLEAF=1.00;MQ=35.19;MQ0=0;MQRankSum=-1.517;QD=8.22;ReadPosRankSum=1.983;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:50:641,50,0 chrX 121043 . G A 921 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.978;DP=119;Dels=0.00;FS=15.730;HaplotypeScore=9.5080;MLEAC=2;MLEAF=1.00;MQ=31.74;MQ0=5;MQRankSum=-0.254;QD=7.74;ReadPosRankSum=2.887;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:4,115:119:81:954,81,0 chrX 121045 . T C 900 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.246;DP=120;Dels=0.00;FS=7.643;HaplotypeScore=12.1625;MLEAC=2;MLEAF=1.00;MQ=31.93;MQ0=5;MQRankSum=0.674;QD=7.50;ReadPosRankSum=2.214;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:2,118:120:84:933,84,0 chrX 121075 . T C 2052 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.665;DP=179;Dels=0.00;FS=18.540;HaplotypeScore=21.9736;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=4;MQRankSum=1.549;QD=11.46;ReadPosRankSum=0.272;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:10,169:179:99:2085,212,0 chrX 121165 . T A 989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.684;DP=83;Dels=0.00;FS=43.523;HaplotypeScore=17.2607;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=1;MQRankSum=3.695;QD=11.92;ReadPosRankSum=-0.495;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:24,59:83:42:1022,42,0 chrX 121174 . G A 208.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;DP=68;Dels=0.00;FS=22.233;HaplotypeScore=24.9533;MLEAC=1;MLEAF=0.500;MQ=37.74;MQ0=1;MQRankSum=3.110;QD=3.06;ReadPosRankSum=-3.930;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:39,26:68:99:238,0,201 chrX 121177 . T C 126.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080;DP=60;Dels=0.00;FS=15.080;HaplotypeScore=27.9347;MLEAC=1;MLEAF=0.500;MQ=35.79;MQ0=1;MQRankSum=2.428;QD=2.10;ReadPosRankSum=-3.995;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:45,15:60:99:156,0,215 chrX 121180 . C T 223.06 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;DP=52;Dels=0.00;FS=2.432;HaplotypeScore=19.8688;MLEAC=1;MLEAF=0.500;MQ=33.23;MQ0=1;MQRankSum=-2.011;QD=4.29;ReadPosRankSum=0.206;SB=-2.091e+02 GT:AD:DP:GQ:PL 0/1:6,46:52:16:253,0,16 chrX 121186 . T C 305.64 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;DP=68;Dels=0.00;FS=3.908;HaplotypeScore=10.9168;MLEAC=1;MLEAF=0.500;MQ=31.72;MQ0=1;MQRankSum=-2.166;QD=4.49;ReadPosRankSum=1.499;SB=-5.415e+02 GT:AD:DP:GQ:PL 0/1:8,59:68:5:335,0,5 chrX 121189 . T C 535 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=10.3048;MLEAC=2;MLEAF=1.00;MQ=32.84;MQ0=1;MQRankSum=-1.755;QD=6.52;ReadPosRankSum=2.430;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:4,78:82:43:568,43,0 chrX 121192 . C T 597 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.379;DP=93;Dels=0.00;FS=2.766;HaplotypeScore=11.7046;MLEAC=2;MLEAF=1.00;MQ=34.71;MQ0=1;MQRankSum=-0.790;QD=6.42;ReadPosRankSum=-1.299;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:3,90:93:31:630,31,0 chrX 121279 . C T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=21.16;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4147,444,0 chrX 121338 . C G 4856.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=19.50;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,245:249:99:4856,516,0 chrX 121348 . C T 4994.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=19.21;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:4994,526,0 chrX 121384 . T C 5285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.962;DP=306;Dels=0.00;FS=14.694;HaplotypeScore=23.7302;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-1.531;QD=17.27;ReadPosRankSum=4.154;SB=-3.232e+03 GT:AD:DP:GQ:PL 1/1:6,299:306:99:5285,585,0 chrX 121624 . C T 6176.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=15.4088;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.71;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,270:272:99:6176,637,0 chrX 121725 . T G 4532.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.8243;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.11;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4532,492,0 chrX 121836 . C T 1702 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=17.37;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1735,177,0 chrX 122039 . C T 313 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=16.47;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,18:19:36:346,36,0 chrX 122051 . A G 314 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=19.62;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:36:347,36,0 chrX 122072 . G A 219.01 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=16.85;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:252,27,0 chrX 122668 . G C 3836.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=13.9295;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;QD=13.18;SB=-3.239e+03 GT:AD:DP:GQ:PL 1/1:0,290:290:99:3836,402,0 chrX 122671 . G C 3893.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;QD=13.02;SB=-3.252e+03 GT:AD:DP:GQ:PL 1/1:0,299:299:99:3893,406,0 chrX 122680 . G A 3852.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=0;QD=12.35;SB=-3.530e+03 GT:AD:DP:GQ:PL 1/1:0,312:312:99:3852,403,0 chrX 123023 . T C 4552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=194;Dels=0.00;FS=3.725;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.351;QD=23.46;ReadPosRankSum=1.696;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,190:194:99:4552,483,0 chrX 123314 . C G 3319.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=41.30;MQ0=0;QD=22.43;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3319,384,0 chrX 123370 . C G 3075 SnpCluster AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=17.47;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3108,345,0 chrX 123378 . A G 2908 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=37.92;MQ0=0;QD=16.91;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2941,321,0 chrX 123380 . C T 2740 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=16.12;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:2773,321,0 chrX 123420 . A G 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=178;Dels=0.02;FS=0.000;HaplotypeScore=7.0053;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;MQRankSum=-0.478;QD=15.28;ReadPosRankSum=1.712;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:2752,294,0 chrX 123421 . A G 2691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.1058;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;MQRankSum=-0.374;QD=15.20;ReadPosRankSum=1.712;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:2724,297,0 chrX 123440 . G T 2894 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=17.43;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2927,303,0 chrX 123508 . C T 2224 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=0;QD=16.72;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2257,246,0 chrX 123510 . G A 2231 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=99.5503;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=0;QD=17.16;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2264,243,0 chrX 123517 . G C 1995 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=103.2820;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;QD=15.71;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2028,225,0 chrX 123546 . C T 1526 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=31.08;MQ0=0;QD=14.40;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1559,168,0 chrX 123564 . A C 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.86;MQ0=0;MQRankSum=-0.102;QD=15.50;ReadPosRankSum=1.698;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:1630,177,0 chrX 123590 . G A 1554 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.29;MQ0=0;QD=18.50;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1587,168,0 chrX 123772 . G A 1715 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=50.5648;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=21.71;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1748,180,0 chrX 123832 . A G 1927 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.28;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1960,207,0 chrX 124064 . G A 4724.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=24.23;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4724,510,0 chrX 124129 . C T 3291.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=18.81;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3291,354,0 chrX 124142 . T C 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.627;DP=186;Dels=0.00;FS=6.067;HaplotypeScore=2.7355;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-1.287;QD=15.94;ReadPosRankSum=2.487;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:2998,327,0 chrX 124157 . C T 3933.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.9752;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.00;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3933,406,0 chrX 124187 . G A 4437.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.8395;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=19.38;SB=-3.091e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4437,460,0 chrX 124553 . T C 4231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=197;Dels=0.00;FS=2.987;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=0.332;QD=21.48;ReadPosRankSum=2.124;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:4231,456,0 chrX 124555 . G A 4578.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.2482;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=23.24;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4578,469,0 chrX 124612 . A C 3946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.369;QD=21.22;ReadPosRankSum=1.713;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,182:186:99:3946,417,0 chrX 124652 . C T 4446.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.92;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4446,477,0 chrX 124691 . T C 4535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=191;Dels=0.00;FS=3.603;HaplotypeScore=15.4726;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.737;QD=23.74;ReadPosRankSum=1.714;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:1,187:191:99:4535,484,0 chrX 124862 . A T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0347;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=23.20;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3317,351,0 chrX 124877 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=21.20;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3064,315,0 chrX 124924 . A G 2882 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.102;DP=158;Dels=0.00;FS=6.804;HaplotypeScore=3.5676;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;MQRankSum=1.370;QD=18.24;ReadPosRankSum=2.324;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:2915,312,0 chrX 124929 . A G 2774 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.141;DP=169;Dels=0.00;FS=3.888;HaplotypeScore=6.6725;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;MQRankSum=1.711;QD=16.41;ReadPosRankSum=0.972;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,163:168:99:2807,303,0 chrX 124933 . G A 3079 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.926;DP=175;Dels=0.00;FS=4.095;HaplotypeScore=17.1334;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;MQRankSum=1.712;QD=17.59;ReadPosRankSum=0.644;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,171:175:99:3112,330,0 chrX 125021 . A G 5415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=222;Dels=0.00;FS=5.540;HaplotypeScore=7.0687;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.234;QD=24.39;ReadPosRankSum=1.701;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:5415,612,0 chrX 125051 . T C 4208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.115;DP=207;Dels=0.00;FS=2.409;HaplotypeScore=2.4344;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=-1.210;QD=20.33;ReadPosRankSum=3.376;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:4,203:207:99:4208,456,0 chrX 125052 . T C 4329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=-1.261;QD=21.01;ReadPosRankSum=1.715;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4329,454,0 chrX 125166 . T C 4532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=215;Dels=0.00;FS=6.849;HaplotypeScore=14.4255;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-0.417;QD=21.08;ReadPosRankSum=2.370;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:4532,492,0 chrX 125244 . T C 4870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=264;Dels=0.00;FS=12.014;HaplotypeScore=9.2064;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-1.405;QD=18.45;ReadPosRankSum=2.934;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:3,258:264:99:4870,520,0 chrX 125246 . A G 4788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=269;Dels=0.00;FS=2.848;HaplotypeScore=7.4443;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=1.762;QD=17.80;ReadPosRankSum=2.394;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:2,262:269:99:4788,528,0 chrX 125297 . T C 6062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=293;Dels=0.00;FS=3.002;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=0.403;QD=20.69;ReadPosRankSum=2.424;SB=-3.473e+03 GT:AD:DP:GQ:PL 1/1:2,287:293:99:6062,652,0 chrX 125340 . C T 6906.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=17.4317;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.65;SB=-3.358e+03 GT:AD:DP:GQ:PL 1/1:0,290:292:99:6906,712,0 chrX 126386 . A G 1693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;MQRankSum=-1.074;QD=21.43;ReadPosRankSum=1.644;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1726,183,0 chrX 126843 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.312;DP=143;Dels=0.00;FS=19.715;HaplotypeScore=12.2883;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.900;QD=22.90;ReadPosRankSum=3.348;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:4,139:143:99:3275,345,0 chrX 126877 . G A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.1500;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.10;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3832,408,0 chrX 127054 . T C 2926 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=19.38;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2959,318,0 chrX 127081 . C T 2700 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.29;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2733,282,0 chrX 127326 . A G 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=4.655;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.482;QD=26.19;ReadPosRankSum=1.638;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2966,315,0 chrX 127567 . A C 3614.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.45;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3614,402,0 chrX 127608 . T C 3753.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.88;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3753,408,0 chrX 127680 . A G 4201.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.73;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4201,439,0 chrX 127843 . G A 4105.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=18.4213;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.19;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4105,429,0 chrX 128403 . A G 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=139;Dels=0.00;FS=3.411;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.357;QD=25.01;ReadPosRankSum=1.707;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,135:139:99:3476,360,0 chrX 128489 . T C 4201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=170;Dels=0.00;FS=2.852;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-2.057;QD=24.71;ReadPosRankSum=2.421;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:4201,444,0 chrX 128560 . C T 4349.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=24.71;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4349,442,0 chrX 128573 . C T 4125.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=24.55;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4125,418,0 chrX 128646 . C T 4302.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=16.1586;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.64;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4302,459,0 chrX 128810 . T C 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.977;QD=21.82;ReadPosRankSum=1.558;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3950,441,0 chrX 128925 . T C 4674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=230;Dels=0.00;FS=15.516;HaplotypeScore=14.2647;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.009;QD=20.32;ReadPosRankSum=2.837;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:3,225:230:99:4674,499,0 chrX 129119 . T C 1995 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.47;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2028,219,0 chrX 129357 . T C 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.0838;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.467;QD=24.11;ReadPosRankSum=1.691;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4099,444,0 chrX 129912 . G A 2273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.566;QD=21.65;ReadPosRankSum=-0.033;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2306,246,0 chrX 130174 . G A 2826 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.01;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2859,294,0 chrX 130653 . C A 3394.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.24;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3394,354,0 chrX 130774 . T A 2731 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.0595;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2764,288,0 chrX 131168 . C T 4948.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=26.04;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4948,514,0 chrX 131236 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.01;FS=0.000;HaplotypeScore=4.4682;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.516;QD=19.38;ReadPosRankSum=1.711;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3276,345,0 chrX 131240 . C T 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=3.346;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-1.277;QD=19.14;ReadPosRankSum=1.574;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3369,348,0 chrX 131358 . C T 5018.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.1613;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:5018,511,0 chrX 132405 . C T 3171 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3204,336,0 chrX 133192 . G A 5373.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.6184;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.20;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5373,550,0 chrX 133354 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=144;Dels=0.00;FS=6.363;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.524;QD=22.94;ReadPosRankSum=2.398;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3303,351,0 chrX 133964 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.85;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3399,352,0 chrX 134085 . C T 2052 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.1658;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=16.55;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2085,222,0 chrX 134512 . G A 2497 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.56;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2530,267,0 chrX 136195 . G A 3220.05 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=19.05;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3253,339,0 chrX 136202 . C T 3022 SnpCluster AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.27;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3055,313,0 chrX 136204 . T C 2796 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=180;Dels=0.00;FS=2.823;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-1.617;QD=15.53;ReadPosRankSum=2.422;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:2829,315,0 chrX 136506 . C T 6085.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.29;SB=-3.528e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:6085,625,0 chrX 136605 . A G 5977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=21.1631;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=0.832;QD=19.60;ReadPosRankSum=1.709;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:1,303:305:99:5977,640,0 chrX 136623 . A C 5024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=256;Dels=0.00;FS=2.468;HaplotypeScore=8.3420;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.917;QD=19.63;ReadPosRankSum=2.972;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:3,251:256:99:5024,561,0 chrX 136648 . C T 5049.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.44;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,241:247:99:5049,540,0 chrX 137767 . G A 4479.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.85;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4479,477,0 chrX 137840 . C T 4918.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.7131;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.71;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4918,523,0 chrX 138281 . A G 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=87;Dels=0.00;FS=6.809;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.175;QD=21.70;ReadPosRankSum=2.393;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1921,213,0 chrX 138413 . C T 3208 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.25;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3241,333,0 chrX 139013 . T C 4962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=213;Dels=0.00;FS=3.486;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.556;QD=23.30;ReadPosRankSum=1.650;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:4962,529,0 chrX 139034 . A G 4880.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.35;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4880,531,0 chrX 139088 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=174;Dels=0.00;FS=2.818;HaplotypeScore=11.7778;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.101;QD=21.95;ReadPosRankSum=2.379;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3819,408,0 chrX 139142 . T C 3388.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.2067;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.17;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3388,378,0 chrX 139214 . G A 2332 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.82;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2365,243,0 chrX 139438 . C T 1483 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=26.48;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1516,156,0 chrX 139468 . A T 2046 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=26.57;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2079,210,0 chrX 139505 . A G 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=9.874;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.917;QD=19.47;ReadPosRankSum=1.630;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1357,153,0 chrX 139506 . A G 1342 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.65;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1375,147,0 chrX 139563 . C T 1325 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.78;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1358,144,0 chrX 139713 . T C 2357 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.62;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2390,264,0 chrX 139819 . A G 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=116;Dels=0.00;FS=3.203;HaplotypeScore=6.1520;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.461;QD=22.86;ReadPosRankSum=1.702;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2685,297,0 chrX 140117 . A G 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=38.62;MQ0=0;MQRankSum=-1.530;QD=18.80;ReadPosRankSum=2.370;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2345,255,0 chrX 140129 . C T 1960 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.96;MQ0=0;QD=18.49;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1993,216,0 chrX 140130 . G A 2049 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.62;MQ0=0;QD=19.51;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2082,219,0 chrX 140133 . T G 2079 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=5.283;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.11;MQ0=0;MQRankSum=-1.732;QD=19.07;ReadPosRankSum=1.668;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2112,222,0 chrX 140135 . T C 2103 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.11;MQ0=0;QD=19.29;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2136,228,0 chrX 140161 . G C 2517 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.04;MQ0=0;QD=20.14;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2550,267,0 chrX 140231 . G A 2825 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=24.35;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2858,300,0 chrX 140417 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=25.34;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2694,282,0 chrX 140649 . T A 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.6835;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.328;QD=23.33;ReadPosRankSum=1.638;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3453,363,0 chrX 140782 . A G 5306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=228;Dels=0.00;FS=10.812;HaplotypeScore=11.9934;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.053;QD=23.27;ReadPosRankSum=2.934;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:3,225:228:99:5306,585,0 chrX 140874 . A G 4264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=179;Dels=0.00;FS=10.771;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.847;QD=23.82;ReadPosRankSum=2.892;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:3,175:179:99:4264,468,0 chrX 141376 . T C 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=145;Dels=0.00;FS=6.091;HaplotypeScore=12.5386;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.173;QD=21.29;ReadPosRankSum=2.878;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:3,139:145:99:3120,336,0 chrX 141812 . C T 3673.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.39;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3673,376,0 chrX 141900 . C T 5187.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=18.9283;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.13;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:5187,532,0 chrX 142013 . T C 3466.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7281;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.88;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3466,378,0 chrX 142022 . G A 3431.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.92;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3431,354,0 chrX 142168 . C T 5165.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.2773;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.27;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5165,544,0 chrX 142256 . C T 3830.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6130;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.79;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3830,394,0 chrX 142628 . C G 4025.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.5264;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.76;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,180:185:99:4025,424,0 chrX 142640 . C T 4198.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.2792;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.64;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4198,427,0 chrX 142900 . G A 4588.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=24.93;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4588,472,0 chrX 142993 . C T 3892.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.63;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3892,414,0 chrX 143163 . G A 2245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.105;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=1.105;QD=19.35;ReadPosRankSum=0.478;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2278,213,0 chrX 143166 . G A 2160 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.38;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2193,231,0 chrX 144131 . T C 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=110;Dels=0.00;FS=3.020;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.748;QD=19.80;ReadPosRankSum=2.358;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:2,105:110:99:2211,237,0 chrX 144137 . G A 2477 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.64;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2510,261,0 chrX 146992 . A G 2958 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.45;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2991,327,0 chrX 148061 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.92;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3150,336,0 chrX 149011 . T C 3601.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.33;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3601,384,0 chrX 149085 . A G 3572.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.05;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3572,387,0 chrX 149101 . A G 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=3.468;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.866;QD=23.14;ReadPosRankSum=1.710;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3703,393,0 chrX 149152 . C T 3369.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.89;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3369,351,0 chrX 149212 . C T 3474.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.47;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3474,357,0 chrX 149320 . T C 4487.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.49;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4487,480,0 chrX 149401 . G A 5046.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.2725;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.25;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5046,543,0 chrX 149570 . A G 5035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.378;QD=23.31;ReadPosRankSum=1.684;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:5035,529,0 chrX 149680 . C T 5136.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.35;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,216:220:99:5136,529,0 chrX 149821 . T C 6263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=251;Dels=0.00;FS=5.327;HaplotypeScore=15.2056;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.305;QD=24.95;ReadPosRankSum=2.948;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:3,247:251:99:6263,667,0 chrX 149864 . A G 6301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.699;DP=262;Dels=0.00;FS=21.927;HaplotypeScore=16.3293;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.627;QD=24.05;ReadPosRankSum=3.801;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:5,255:262:99:6301,685,0 chrX 150181 . G A 6193.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=16.0391;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.02;SB=-3.269e+03 GT:AD:DP:GQ:PL 1/1:0,267:269:99:6193,640,0 chrX 150264 . G A 3041 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=18.89;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3074,333,0 chrX 150265 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.63;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3300,339,0 chrX 150482 . A G 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=133;Dels=0.00;FS=5.477;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=-1.099;QD=21.80;ReadPosRankSum=2.947;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:2933,315,0 chrX 150563 . A G 1989 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.10;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2022,225,0 chrX 150688 . C A 1786 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=18.60;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1819,192,0 chrX 150695 . T C 1540 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=17.70;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1573,174,0 chrX 150706 . G A 1291 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=18.71;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1324,135,0 chrX 150764 . A C 1030 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.73;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1063,120,0 chrX 150818 . A G 1148 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.6810;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.50;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1181,129,0 chrX 150829 . C T 1038 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.62;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1071,114,0 chrX 150921 . T C 1053 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=22.40;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1086,114,0 chrX 151221 . C T 3730.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.6557;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.02;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3730,402,0 chrX 151359 . A G 3862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.511;DP=173;Dels=0.00;FS=4.882;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.349;QD=22.32;ReadPosRankSum=3.756;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:5,168:173:99:3862,420,0 chrX 151494 . G A 4194.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.9493;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.89;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4194,439,0 chrX 151609 . C T 3696.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.85;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3696,382,0 chrX 151845 . C T 5608.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.76;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5608,586,0 chrX 152136 . C T 5524.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=19.9969;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.12;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:5524,580,0 chrX 152244 . T C 4832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=230;Dels=0.00;FS=5.555;HaplotypeScore=13.0384;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.813;QD=21.01;ReadPosRankSum=1.702;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:4832,502,0 chrX 152412 . C G 2950 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.0391;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.07;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:2983,321,0 chrX 152475 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3327,357,0 chrX 153741 . A G 1492.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;DP=213;Dels=0.00;FS=40.565;HaplotypeScore=17.3195;MLEAC=1;MLEAF=0.500;MQ=24.09;MQ0=101;MQRankSum=4.759;QD=7.00;ReadPosRankSum=4.197;SB=-1.200e+02 GT:AD:DP:GQ:PL 0/1:68,140:213:99:1522,0,126 chrX 154059 . A G 291.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=12.31;MQ0=152;MQRankSum=-1.631;QD=1.11;ReadPosRankSum=-0.818;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,132:260:99:321,0,534 chrX 154071 . G A 262.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.110;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=11.14;MQ0=183;MQRankSum=-0.429;QD=0.94;ReadPosRankSum=-0.458;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:137,143:280:99:292,0,452 chrX 157619 . A T 4513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=188;Dels=0.00;FS=3.424;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.046;QD=24.01;ReadPosRankSum=1.658;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4513,483,0 chrX 159788 . A T 3153 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.71;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3186,330,0 chrX 159830 . G A 2821 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.57;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2854,303,0 chrX 159859 . A G 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=-1.635;QD=20.81;ReadPosRankSum=1.708;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3029,327,0 chrX 159893 . T C 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.523;DP=149;Dels=0.00;FS=3.040;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=-0.895;QD=20.06;ReadPosRankSum=-0.081;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3022,313,0 chrX 159934 . T C 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=3.040;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;MQRankSum=0.565;QD=19.99;ReadPosRankSum=2.360;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:2791,297,0 chrX 159938 . C T 2737 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;QD=20.58;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2770,282,0 chrX 160149 . G A 1753 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.50;MQ0=0;QD=14.25;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1786,186,0 chrX 160169 . G A 1595 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=32.23;MQ0=0;QD=13.29;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1628,174,0 chrX 160171 . G A 1531 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=31.19;MQ0=0;QD=13.09;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1564,165,0 chrX 160173 . C A 1437 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=104.8812;MLEAC=2;MLEAF=1.00;MQ=31.25;MQ0=0;QD=12.61;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1470,159,0 chrX 160189 . A G 1275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=6.240;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;MQRankSum=-1.874;QD=9.04;ReadPosRankSum=2.415;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:1308,141,0 chrX 160190 . A T 1326 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=9.54;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1359,141,0 chrX 160206 . G C 1567 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.8245;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.73;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:1600,168,0 chrX 160222 . T C 1582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=168;Dels=0.00;FS=10.087;HaplotypeScore=2.2702;MLEAC=2;MLEAF=1.00;MQ=29.84;MQ0=0;MQRankSum=-2.970;QD=9.42;ReadPosRankSum=2.958;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:1615,177,0 chrX 160223 . C A 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=3.362;HaplotypeScore=2.2702;MLEAC=2;MLEAF=1.00;MQ=29.84;MQ0=0;MQRankSum=-1.732;QD=9.95;ReadPosRankSum=1.691;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:1705,177,0 chrX 160269 . T C 1545 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=122.7545;MLEAC=2;MLEAF=1.00;MQ=35.88;MQ0=0;QD=10.96;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1578,171,0 chrX 160275 . C T 1572 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=11.9197;MLEAC=2;MLEAF=1.00;MQ=37.22;MQ0=0;QD=11.15;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1605,165,0 chrX 160399 . A C 2095 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.49;MQ0=0;QD=21.82;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2128,225,0 chrX 160500 . C T 1589 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=18.26;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1622,171,0 chrX 160930 . G A 7471.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=18.5868;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.24;SB=-3.954e+03 GT:AD:DP:GQ:PL 1/1:0,295:296:99:7471,781,0 chrX 161023 . C T 6096.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=16.7083;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.36;SB=-2.917e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:6096,655,0 chrX 161104 . C G 5920.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=18.4661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.61;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,272:274:99:5920,657,0 chrX 161596 . A G 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.230;QD=20.12;ReadPosRankSum=2.373;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2629,291,0 chrX 162192 . A G 4260.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=23.41;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4260,450,0 chrX 162208 . G T 4086.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.4699;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=21.73;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4086,438,0 chrX 162223 . A T 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=0.459;QD=20.45;ReadPosRankSum=1.690;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3395,335,0 chrX 162228 . C G 3454.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=20.68;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3454,366,0 chrX 162327 . A G 3523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=151;Dels=0.00;FS=5.578;HaplotypeScore=11.1625;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.047;QD=23.33;ReadPosRankSum=2.914;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3523,381,0 chrX 162424 . G A 3676.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=22.01;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3676,384,0 chrX 162437 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=23.22;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3529,358,0 chrX 162522 . C A 3886.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.7323;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=25.23;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3886,400,0 chrX 162765 . C A 3963.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=21.08;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3963,412,0 chrX 162768 . G A 3819.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=20.10;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3819,397,0 chrX 162822 . A G 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=188;Dels=0.00;FS=7.453;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=0.817;QD=16.13;ReadPosRankSum=2.345;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:3065,339,0 chrX 162832 . A C 3485.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=17.51;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3485,375,0 chrX 162922 . G A 5140.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=7.8026;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.87;SB=-3.110e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5140,541,0 chrX 162937 . C T 5522.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=9.5151;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.91;SB=-3.140e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5522,574,0 chrX 163370 . C T 4209.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.9656;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=24.91;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4209,430,0 chrX 163417 . G A 3619.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=24.29;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3619,373,0 chrX 163422 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=3.367;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-0.889;QD=23.41;ReadPosRankSum=1.664;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3559,381,0 chrX 163446 . A T 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.779;QD=21.26;ReadPosRankSum=1.710;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3401,363,0 chrX 163467 . G C 2839 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.8475;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=17.97;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:2872,321,0 chrX 163507 . T C 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=3.743;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-0.656;QD=19.58;ReadPosRankSum=1.689;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3185,342,0 chrX 163656 . C G 3427.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.47;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3427,378,0 chrX 163830 . A C 3400.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.1242;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3400,372,0 chrX 163958 . C T 4420.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.55;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4420,471,0 chrX 163993 . A G 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=157;Dels=0.00;FS=3.938;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.599;QD=23.71;ReadPosRankSum=1.710;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3723,402,0 chrX 164155 . C T 3901.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3901,403,0 chrX 164308 . C T 3191 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.81;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3224,336,0 chrX 164955 . C G 3884.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.7889;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.12;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3884,417,0 chrX 165369 . C G 3542.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3542,390,0 chrX 165714 . T C 1936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.632;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.369;QD=22.78;ReadPosRankSum=2.917;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:3,82:85:99:1969,216,0 chrX 166575 . T C 5341.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=22.35;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5341,594,0 chrX 166814 . C T 4440.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4440,474,0 chrX 167196 . G A 5878.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-3.174e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5878,616,0 chrX 167289 . C T 5146.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.9735;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.71;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5146,538,0 chrX 167370 . G A 6099.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=16.0506;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-3.401e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6099,649,0 chrX 167814 . C T 5906.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=11.2248;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.44;SB=-2.922e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5906,607,0 chrX 170079 . A G 4819.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4819,514,0 chrX 170556 . T A 4941.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.4058;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.08;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4941,523,0 chrX 170610 . G A 4951.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4951,514,0 chrX 170649 . C A 4684.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.63;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4684,501,0 chrX 171357 . A G 4962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=205;Dels=0.00;FS=2.998;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.066;QD=24.20;ReadPosRankSum=2.377;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4962,529,0 chrX 171615 . C T 3588.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.75;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3588,378,0 chrX 171627 . C T 3492.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.16;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3492,361,0 chrX 171764 . T C 4977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=224;Dels=0.00;FS=2.896;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.383;QD=22.22;ReadPosRankSum=2.405;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:2,219:224:99:4977,540,0 chrX 172240 . A G 3515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=154;Dels=0.00;FS=3.027;HaplotypeScore=11.4309;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.091;QD=22.82;ReadPosRankSum=2.417;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3515,375,0 chrX 172600 . G A 2691 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=24.03;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2724,282,0 chrX 172657 . A T 2743 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.45;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2776,288,0 chrX 172660 . A G 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=147;Dels=0.00;FS=3.161;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=0.200;QD=17.92;ReadPosRankSum=1.709;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2667,288,0 chrX 175555 . T A 5621.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=12.1030;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.12;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5621,586,0 chrX 178010 . G T 2275 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.28;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2308,240,0 chrX 182592 . A G 7069.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=17.4857;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.75;SB=-3.338e+03 GT:AD:DP:GQ:PL 1/1:0,324:325:99:7069,760,0 chrX 183608 . T C 5658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=24.4234;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.676;QD=22.63;ReadPosRankSum=1.718;SB=-3.073e+03 GT:AD:DP:GQ:PL 1/1:1,247:250:99:5658,607,0 chrX 183738 . C T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.93;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3704,393,0 chrX 183827 . T C 5079.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.2230;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.80;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5079,535,0 chrX 184244 . G C 2246 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2279,240,0 chrX 184421 . G T 2533 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.11;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2566,261,0 chrX 184592 . C T 3398.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.74;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3398,351,0 chrX 184817 . A C 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=159;Dels=0.00;FS=2.930;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.507;QD=23.87;ReadPosRankSum=2.419;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3795,397,0 chrX 185090 . T C 4640.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.7982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4640,493,0 chrX 185495 . A T 1100 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1133,117,0 chrX 185538 . G A 1380 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1413,150,0 chrX 185621 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=24.22;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2407,249,0 chrX 185641 . T C 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.9030;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.162;QD=20.38;ReadPosRankSum=2.889;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:3,97:100:99:2071,222,0 chrX 185696 . T C 2526 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.41;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2559,276,0 chrX 186025 . A C 6268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=10.3481;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.974;QD=21.69;ReadPosRankSum=1.720;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:1,287:289:99:6268,673,0 chrX 186317 . T C 4181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.0527;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.617;QD=20.60;ReadPosRankSum=2.425;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:4181,450,0 chrX 186681 . T C 2050 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2083,216,0 chrX 187012 . T A 935 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:99:968,105,0 chrX 187652 . G T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.5893;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.76;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3550,387,0 chrX 187765 . A T 2554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=122;Dels=0.00;FS=3.382;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-1.335;QD=20.93;ReadPosRankSum=1.647;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2587,267,0 chrX 187781 . T G 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=129;Dels=0.00;FS=2.892;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-0.874;QD=21.62;ReadPosRankSum=2.392;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2822,303,0 chrX 187877 . C T 2882 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=14.3565;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.04;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2915,300,0 chrX 188331 . C T 5357.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.99;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5357,594,0 chrX 188568 . G A 4041.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.2445;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.83;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4041,424,0 chrX 188645 . T C 3610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=154;Dels=0.00;FS=2.896;HaplotypeScore=8.2883;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.758;QD=23.44;ReadPosRankSum=2.418;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3610,390,0 chrX 188897 . C T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.5974;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.59;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3390,357,0 chrX 188961 . G A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.65;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3832,402,0 chrX 189030 . C T 1295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.565;DP=137;Dels=0.00;FS=3.588;HaplotypeScore=94.8917;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;MQRankSum=4.381;QD=9.45;ReadPosRankSum=-7.218;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:35,100:137:99:1328,150,0 chrX 189051 . C T 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=17.5018;MLEAC=1;MLEAF=0.500;MQ=47.88;MQ0=0;MQRankSum=-0.608;QD=0.33;ReadPosRankSum=-4.543;SB=-9.801e+01 GT:AD:DP:GQ:PL 0/1:111,23:135:74:74,0,1313 chrX 189105 . G A 3028 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.63;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3061,321,0 chrX 189151 . T C 4003.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=24.41;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4003,432,0 chrX 189441 . T C 2309 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=22.86;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2342,246,0 chrX 189443 . T C 2088 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=21.31;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2121,237,0 chrX 189445 . C T 2238 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=22.84;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2271,234,0 chrX 189631 . G T 1814 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.60;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1847,189,0 chrX 190081 . T G 5070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.4934;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.416;QD=25.74;ReadPosRankSum=1.714;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:5070,532,0 chrX 190205 . G A 3937.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3937,411,0 chrX 190302 . T A 3959.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.3495;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.43;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3959,417,0 chrX 190560 . G A 4186.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.39;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4186,433,0 chrX 191872 . C T 5421.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.7072;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.40;SB=-3.052e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5421,577,0 chrX 192041 . A G 6760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=304;Dels=0.00;FS=6.947;HaplotypeScore=19.9718;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.044;QD=22.24;ReadPosRankSum=2.344;SB=-3.483e+03 GT:AD:DP:GQ:PL 1/1:2,300:304:99:6760,738,0 chrX 192487 . A G 4010.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.45;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4010,450,0 chrX 192956 . C T 6557.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-3.416e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:6557,667,0 chrX 193388 . A G 1234 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.90;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1267,135,0 chrX 193406 . C T 1481 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.16;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1514,153,0 chrX 193554 . A T 924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.311;QD=23.69;ReadPosRankSum=1.644;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:99:957,99,0 chrX 193639 . G A 794 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=18.90;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:84:827,84,0 chrX 193641 . A T 725 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=16.86;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:81:758,81,0 chrX 194040 . C T 4130.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.15;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4130,433,0 chrX 194081 . G A 5120.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.1081;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.81;SB=-3.134e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5120,520,0 chrX 194790 . G A 5151.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=17.5009;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.79;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5151,529,0 chrX 194922 . A T 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.853;QD=23.86;ReadPosRankSum=1.705;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3135,324,0 chrX 195076 . C T 2880 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2913,300,0 chrX 195349 . T C 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=148;Dels=0.00;FS=5.893;HaplotypeScore=12.2149;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;MQRankSum=-0.760;QD=21.73;ReadPosRankSum=2.911;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:3,144:148:99:3249,351,0 chrX 195664 . G C 3218.91 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=18.1831;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.39;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,158:166:99:3252,354,0 chrX 195964 . G A 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=196;Dels=0.00;FS=4.002;HaplotypeScore=12.0382;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.379;QD=21.58;ReadPosRankSum=1.679;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4229,456,0 chrX 196206 . C G 2782 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.58;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2815,294,0 chrX 196451 . G A 4577.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.6569;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=25.29;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4577,472,0 chrX 196502 . T C 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.514;QD=20.91;ReadPosRankSum=1.694;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3806,420,0 chrX 196517 . C T 3937.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5909;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.51;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3937,417,0 chrX 196670 . A G 6108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=23.2536;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.931;QD=22.54;ReadPosRankSum=0.013;SB=-3.342e+03 GT:AD:DP:GQ:PL 1/1:1,267:271:99:6108,681,0 chrX 196724 . A C 6025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=264;Dels=0.00;FS=8.833;HaplotypeScore=22.0486;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.630;QD=22.82;ReadPosRankSum=2.421;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:2,257:264:99:6025,690,0 chrX 197018 . G C 4200.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.54;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4200,444,0 chrX 197272 . A G 1549 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.25;MQ0=0;QD=25.39;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1582,168,0 chrX 197405 . G T 1019 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.39;MQ0=0;QD=19.98;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1052,111,0 chrX 197407 . T G 986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=0;MQRankSum=-1.317;QD=19.72;ReadPosRankSum=1.663;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1019,111,0 chrX 197458 . A T 1119 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.27;MQ0=0;QD=18.34;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1152,123,0 chrX 197486 . G A 438 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.94;MQ0=0;QD=12.51;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:51:471,51,0 chrX 204339 . C G 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.79;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:101,12,0 chrX 204341 . C T 80.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.50;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:113,12,0 chrX 204343 . C T 85.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.22;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:118,12,0 chrX 204353 . C T 123.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.80;SB=-1.415e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:156,18,0 chrX 204354 . A G 109.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.80;SB=-1.415e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:142,18,0 chrX 204356 . G A 114.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.15;SB=-1.415e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:147,18,0 chrX 204359 . T C 127.13 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.69;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:18:160,18,0 chrX 204371 . T C 137.13 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.27;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:18:170,18,0 chrX 204379 . C T 170.06 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.54;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:21:203,21,0 chrX 204387 . A T 176.06 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.52;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:21:209,21,0 chrX 204403 . C T 220.01 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.67;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,33:33:27:253,27,0 chrX 204414 . A T 279 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.98;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:33:312,33,0 chrX 204420 . T C 157.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.096;QD=4.36;ReadPosRankSum=0.096;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,35:36:21:190,21,0 chrX 204422 . A T 168.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.67;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:21:201,21,0 chrX 204425 . T C 158.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.39;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:21:191,21,0 chrX 204426 . G A 158.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.39;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:21:191,21,0 chrX 204436 . C A 167.06 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.07;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,41:41:21:200,21,0 chrX 204479 . A G 238 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=48.3254;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.61;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:30:271,30,0 chrX 204480 . G C 239 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=48.3254;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.64;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:30:272,30,0 chrX 204483 . A G 257 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=48.3254;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.14;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:30:290,30,0 chrX 204588 . G A 1894 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=26.31;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1927,195,0 chrX 204589 . G A 1856 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;QD=25.42;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1889,195,0 chrX 204641 . A G 2167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=94;Dels=0.00;FS=6.849;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;MQRankSum=0.170;QD=23.05;ReadPosRankSum=2.397;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2200,237,0 chrX 204728 . A G 2422 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2894;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=22.85;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2455,273,0 chrX 204849 . C T 1263 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=15.79;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1296,135,0 chrX 205042 . A G 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=6.738;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.677;QD=26.11;ReadPosRankSum=1.663;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3968,412,0 chrX 205203 . A T 4860.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.48;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4860,508,0 chrX 205704 . A G 4716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.681;QD=23.35;ReadPosRankSum=1.698;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4716,504,0 chrX 205745 . G C 4895.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=21.5635;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.45;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,214:218:99:4895,523,0 chrX 205934 . T C 2488 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.45;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2521,279,0 chrX 206111 . G A 3540.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.9384;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3540,381,0 chrX 206271 . C T 3799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=16.9897;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.501;QD=22.75;ReadPosRankSum=-0.438;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3799,388,0 chrX 206537 . T C 4069.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5890;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.73;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4069,447,0 chrX 207695 . T A 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.5309;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.590;QD=25.07;ReadPosRankSum=1.694;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2314,237,0 chrX 208251 . T C 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=171;Dels=0.00;FS=7.692;HaplotypeScore=7.9077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.763;QD=23.80;ReadPosRankSum=2.421;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:2,167:171:99:4069,435,0 chrX 208641 . C T 4232.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.7645;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.04;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4232,450,0 chrX 209321 . T A 4790.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.48;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4790,496,0 chrX 210345 . C A 5085.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.4520;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.81;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5085,523,0 chrX 210759 . G C 3637.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=24.5697;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.78;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:99:3637,387,0 chrX 211343 . T C 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=184;Dels=0.00;FS=2.992;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.788;QD=21.96;ReadPosRankSum=2.396;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:2,180:184:99:4041,429,0 chrX 211437 . A G 4764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=221;Dels=0.00;FS=3.015;HaplotypeScore=15.1204;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.207;QD=21.56;ReadPosRankSum=2.405;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:2,217:221:99:4764,505,0 chrX 211638 . A T 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.8121;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.684;QD=21.65;ReadPosRankSum=1.687;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3291,345,0 chrX 211845 . C A 2410 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.5827;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.52;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2443,258,0 chrX 212471 . C T 4010.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.45;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4010,426,0 chrX 213011 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.86;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2618,276,0 chrX 213175 . T C 3091 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3124,336,0 chrX 213910 . T C 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=129;Dels=0.00;FS=3.031;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.543;QD=22.25;ReadPosRankSum=2.316;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2903,315,0 chrX 214253 . A G 4625.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.60;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4625,513,0 chrX 214698 . A G 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=153;Dels=0.00;FS=6.459;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.153;QD=23.63;ReadPosRankSum=2.417;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3615,387,0 chrX 215069 . C T 5492.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.43;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5492,559,0 chrX 215389 . A T 4392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=3.722;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.906;QD=25.53;ReadPosRankSum=1.692;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4392,460,0 chrX 215482 . T C 3283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=140;Dels=0.00;FS=3.871;HaplotypeScore=12.7497;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.037;QD=23.45;ReadPosRankSum=1.707;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3283,351,0 chrX 215637 . A G 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.416;QD=24.54;ReadPosRankSum=1.705;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3199,342,0 chrX 215960 . C T 3462.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.84;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3462,355,0 chrX 216038 . C T 3072 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.79;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3105,333,0 chrX 216619 . G A 4156.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.2003;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.19;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4156,427,0 chrX 218228 . T C 5871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=251;Dels=0.00;FS=3.028;HaplotypeScore=11.7299;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.182;QD=23.39;ReadPosRankSum=2.342;SB=-3.234e+03 GT:AD:DP:GQ:PL 1/1:2,248:251:99:5871,628,0 chrX 219324 . T C 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.120;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.3957;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.340;QD=20.71;ReadPosRankSum=-0.970;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,158:163:99:3375,357,0 chrX 219354 . A C 2952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.706;QD=22.36;ReadPosRankSum=1.706;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2985,333,0 chrX 219722 . C G 3032 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3065,330,0 chrX 220315 . C T 2244 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=21.17;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2277,243,0 chrX 220326 . C A 1787 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=18.61;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1820,189,0 chrX 220340 . T G 1588 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=17.26;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1621,177,0 chrX 220466 . A C 3502.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.1402;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.31;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3502,393,0 chrX 220527 . T A 2160 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.04;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2193,228,0 chrX 220622 . G C 1974 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.50;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2007,213,0 chrX 220764 . T G 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.160;QD=22.71;ReadPosRankSum=1.698;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2395,267,0 chrX 220988 . T A 2400 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.53;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2433,252,0 chrX 221606 . G T 5351.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.00;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5351,565,0 chrX 222563 . T G 4196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.7877;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.712;QD=24.25;ReadPosRankSum=1.168;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4196,445,0 chrX 222822 . A G 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.707;QD=22.58;ReadPosRankSum=1.608;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3194,357,0 chrX 223465 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.41;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2472,255,0 chrX 224217 . A G 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.848;QD=20.57;ReadPosRankSum=1.683;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2975,318,0 chrX 225914 . T C 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=163;Dels=0.00;FS=3.092;HaplotypeScore=22.6197;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.463;QD=16.87;ReadPosRankSum=1.711;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:2783,309,0 chrX 225965 . C T 3443.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=18.31;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3443,358,0 chrX 226665 . C T 1584 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.75;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1617,174,0 chrX 227303 . A T 3560.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.18;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3560,366,0 chrX 227829 . T C 4116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=188;Dels=0.00;FS=10.373;HaplotypeScore=12.7174;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.321;QD=21.89;ReadPosRankSum=2.919;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:3,182:188:99:4116,453,0 chrX 227925 . T C 4125.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.0766;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.71;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4125,447,0 chrX 228198 . T C 3557.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.7243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3557,375,0 chrX 228673 . C T 903 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:936,93,0 chrX 228732 . A G 570 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:66:603,66,0 chrX 228793 . A T 882 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:915,96,0 chrX 230464 . G C 3437.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.62;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3437,381,0 chrX 232788 . A G 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=110;Dels=0.00;FS=6.221;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.018;QD=22.76;ReadPosRankSum=2.405;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2537,273,0 chrX 237353 . G A 5287.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=18.2037;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5287,565,0 chrX 239866 . T G 4260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=183;Dels=0.00;FS=2.964;HaplotypeScore=15.6746;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.757;QD=23.28;ReadPosRankSum=2.422;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:2,179:183:99:4260,474,0 chrX 240082 . C A 4062.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.21;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4062,432,0 chrX 241271 . G A 1714 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1747,180,0 chrX 242335 . A G 4953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=205;Dels=0.00;FS=13.937;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.525;QD=24.16;ReadPosRankSum=2.907;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:3,202:205:99:4953,529,0 chrX 244527 . G A 9255.01 filter AC=2;AF=1.00;AN=2;DP=382;Dels=0.00;FS=0.000;HaplotypeScore=25.9170;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.23;SB=-4.910e+03 GT:AD:DP:GQ:PL 1/1:0,381:382:99:9255,982,0 chrX 244569 . G A 10644.01 filter AC=2;AF=1.00;AN=2;DP=420;Dels=0.00;FS=0.000;HaplotypeScore=19.2644;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.34;SB=-5.117e+03 GT:AD:DP:GQ:PL 1/1:0,420:420:99:10644,1123,0 chrX 246236 . C A 1702 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1735,177,0 chrX 248169 . A G 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=123;Dels=0.00;FS=10.518;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.170;QD=24.33;ReadPosRankSum=2.350;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:3026,330,0 chrX 248312 . G A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.98;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3420,357,0 chrX 248329 . C T 2788 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=18.71;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:2821,303,0 chrX 248378 . G C 3403.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.54;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3403,360,0 chrX 248878 . C A 2536 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2569,267,0 chrX 248957 . G A 2964 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.46;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2997,309,0 chrX 249343 . G A 2948 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.3382;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.17;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2981,318,0 chrX 249923 . T C 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=178;Dels=0.00;FS=6.349;HaplotypeScore=15.6500;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.035;QD=20.88;ReadPosRankSum=2.366;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:3717,396,0 chrX 250151 . T C 3595.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3595,387,0 chrX 250308 . G T 5661.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.1858;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.27;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5661,583,0 chrX 250541 . T A 5347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=235;Dels=0.00;FS=3.888;HaplotypeScore=9.8639;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.111;QD=22.75;ReadPosRankSum=1.717;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5347,579,0 chrX 252564 . T C 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=3.790;HaplotypeScore=11.6307;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.688;QD=22.28;ReadPosRankSum=1.708;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3298,366,0 chrX 252640 . G C 3277.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.5634;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.75;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3277,363,0 chrX 257035 . G A 4525.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,191:195:99:4525,469,0 chrX 257521 . C A 2971 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3004,330,0 chrX 258025 . T C 4532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.218;QD=24.77;ReadPosRankSum=1.675;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4532,483,0 chrX 258142 . G A 5514.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.73;SB=-3.016e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5514,571,0 chrX 260294 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.708;DP=217;Dels=0.00;FS=16.624;HaplotypeScore=13.3502;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-2.692;QD=15.09;ReadPosRankSum=3.787;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:5,212:217:99:3274,351,0 chrX 260320 . T C 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=214;Dels=0.00;FS=3.680;HaplotypeScore=15.4131;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-1.006;QD=15.81;ReadPosRankSum=1.600;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:1,209:214:99:3383,366,0 chrX 261474 . C G 2967 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3000,312,0 chrX 262898 . A G 3699.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3699,396,0 chrX 263508 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.42;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3559,378,0 chrX 264633 . C T 4077.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4077,412,0 chrX 265950 . T G 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.819;DP=88;Dels=0.00;FS=82.128;HaplotypeScore=23.8305;MLEAC=1;MLEAF=0.500;MQ=58.68;MQ0=0;MQRankSum=2.337;QD=0.42;ReadPosRankSum=-1.238;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,33:88:67:67,0,935 chrX 266741 . T A 2140 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.48;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2173,231,0 chrX 267355 . A C 1701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=3.239;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.244;QD=21.81;ReadPosRankSum=1.688;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1734,186,0 chrX 272191 . T C 4398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.424;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.5086;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.079;QD=22.67;ReadPosRankSum=1.152;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:1,190:194:99:4398,449,0 chrX 272847 . T C 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=3.069;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.785;QD=23.02;ReadPosRankSum=1.709;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3476,381,0 chrX 273130 . C A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2470;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3486,363,0 chrX 273961 . C T 5055.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.1615;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.53;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5055,523,0 chrX 275348 . G T 3815.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3815,402,0 chrX 275952 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2943,306,0 chrX 276453 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3235,333,0 chrX 277465 . C T 3619.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3472;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.97;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3619,396,0 chrX 277623 . T C 3412.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0862;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.86;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3412,363,0 chrX 277760 . C T 4051.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.1911;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.01;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4051,415,0 chrX 278408 . C A 3033 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.27;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3066,315,0 chrX 279703 . G A 5789.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.39;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5789,601,0 chrX 280337 . A G 5834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.961;DP=234;Dels=0.00;FS=10.216;HaplotypeScore=12.0059;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.048;QD=24.93;ReadPosRankSum=2.918;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:3,229:234:99:5834,625,0 chrX 281003 . T C 2332 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.46;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2365,249,0 chrX 281006 . C A 2595 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.7254;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.81;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2628,264,0 chrX 281056 . T C 4140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.624;DP=189;Dels=0.00;FS=7.803;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-1.108;QD=21.90;ReadPosRankSum=3.790;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:5,183:189:99:4140,441,0 chrX 282738 . A G 3571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=151;Dels=0.00;FS=5.920;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.463;QD=23.65;ReadPosRankSum=2.953;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:3571,375,0 chrX 284309 . C T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3840,400,0 chrX 287737 . C T 3856.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=17.5391;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.19;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3856,405,0 chrX 288319 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3671,408,0 chrX 288609 . G A 5663.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.11;SB=-3.206e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5663,589,0 chrX 289605 . G A 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.267;DP=88;Dels=0.03;FS=70.347;HaplotypeScore=20.3766;MLEAC=1;MLEAF=0.500;MQ=56.98;MQ0=0;MQRankSum=2.193;QD=0.61;ReadPosRankSum=-3.212;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,28:85:84:84,0,440 chrX 290883 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.7009;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.32;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3527,367,0 chrX 290968 . T C 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=112;Dels=0.00;FS=3.732;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.576;QD=22.99;ReadPosRankSum=1.701;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2608,285,0 chrX 291961 . G A 7393.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=19.5875;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.70;SB=-3.518e+03 GT:AD:DP:GQ:PL 1/1:0,312:312:99:7393,775,0 chrX 291992 . C G 7704.01 PASS AC=2;AF=1.00;AN=2;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=31.5101;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.01;SB=-3.741e+03 GT:AD:DP:GQ:PL 1/1:0,342:350:99:7704,832,0 chrX 292070 . C T 8690.01 PASS AC=2;AF=1.00;AN=2;DP=360;Dels=0.00;FS=0.000;HaplotypeScore=22.4871;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.14;SB=-4.534e+03 GT:AD:DP:GQ:PL 1/1:0,357:360:99:8690,919,0 chrX 292437 . G A 6564.01 filter AC=2;AF=1.00;AN=2;DP=381;Dels=0.00;FS=0.000;HaplotypeScore=10.1973;MLEAC=2;MLEAF=1.00;MQ=39.95;MQ0=0;QD=17.23;SB=-4.795e+03 GT:AD:DP:GQ:PL 1/1:0,379:380:99:6564,688,0 chrX 292616 . T C 7646.01 PASS AC=2;AF=1.00;AN=2;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=16.9097;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=22.76;SB=-4.195e+03 GT:AD:DP:GQ:PL 1/1:0,335:336:99:7646,846,0 chrX 292930 . T C 7510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=296;Dels=0.00;FS=2.886;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;MQRankSum=1.751;QD=25.37;ReadPosRankSum=2.433;SB=-3.393e+03 GT:AD:DP:GQ:PL 1/1:2,293:296:99:7510,799,0 chrX 293102 . C T 81.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.329;DP=531;Dels=0.00;FS=20.816;HaplotypeScore=307.0480;MLEAC=1;MLEAF=0.500;MQ=41.66;MQ0=0;MQRankSum=-13.683;QD=0.15;ReadPosRankSum=-8.424;SB=-1.691e+03 GT:AD:DP:GQ:PL 0/1:339,189:531:99:111,0,979 chrX 293105 . C T 189.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.642;DP=533;Dels=0.00;FS=22.623;HaplotypeScore=291.1732;MLEAC=1;MLEAF=0.500;MQ=40.67;MQ0=0;MQRankSum=-13.082;QD=0.35;ReadPosRankSum=-6.661;SB=-1.850e+03 GT:AD:DP:GQ:PL 0/1:331,201:533:99:219,0,729 chrX 293117 . T C 428.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.632;DP=527;Dels=0.00;FS=18.740;HaplotypeScore=33.5049;MLEAC=1;MLEAF=0.500;MQ=38.63;MQ0=0;MQRankSum=-10.376;QD=0.81;ReadPosRankSum=-2.155;SB=-2.340e+03 GT:AD:DP:GQ:PL 0/1:269,244:527:99:458,0,2122 chrX 293118 . A T 359.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.801;DP=532;Dels=0.00;FS=28.893;HaplotypeScore=38.9570;MLEAC=1;MLEAF=0.500;MQ=38.88;MQ0=0;MQRankSum=-11.503;QD=0.67;ReadPosRankSum=4.106;SB=-2.352e+03 GT:AD:DP:GQ:PL 0/1:282,250:532:99:389,0,2805 chrX 293121 . G A 654.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.706;DP=548;Dels=0.00;FS=26.879;HaplotypeScore=44.5240;MLEAC=1;MLEAF=0.500;MQ=39.02;MQ0=0;MQRankSum=-10.357;QD=1.19;ReadPosRankSum=8.771;SB=-2.621e+03 GT:AD:DP:GQ:PL 0/1:277,271:548:99:684,0,3044 chrX 293133 . G A 1858.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.899;DP=561;Dels=0.00;FS=26.033;HaplotypeScore=32.9381;MLEAC=1;MLEAF=0.500;MQ=39.62;MQ0=0;MQRankSum=-3.879;QD=3.31;ReadPosRankSum=12.982;SB=-2.825e+03 GT:AD:DP:GQ:PL 0/1:222,336:561:99:1888,0,1666 chrX 293142 . C A 1003.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.130;DP=575;Dels=0.00;FS=19.967;HaplotypeScore=53.7956;MLEAC=1;MLEAF=0.500;MQ=40.43;MQ0=0;MQRankSum=-6.277;QD=1.74;ReadPosRankSum=-18.144;SB=-1.392e+03 GT:AD:DP:GQ:PL 0/1:378,192:573:99:1033,0,2802 chrX 293531 . G A 5778.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.18;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5778,604,0 chrX 294333 . T C 4789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=213;Dels=0.00;FS=3.553;HaplotypeScore=13.1860;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=-0.626;QD=22.48;ReadPosRankSum=1.700;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4789,513,0 chrX 294490 . C T 418 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7046;MLEAC=2;MLEAF=1.00;MQ=37.22;MQ0=0;QD=2.94;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:48:451,48,0 chrX 295643 . T C 4637.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4637,501,0 chrX 296186 . A G 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=207;Dels=0.00;FS=2.539;HaplotypeScore=23.9034;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.505;QD=20.17;ReadPosRankSum=2.387;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:3,203:207:99:4176,444,0 chrX 296872 . T A 4572.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=22.5404;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4572,472,0 chrX 297043 . T C 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=178;Dels=0.00;FS=7.262;HaplotypeScore=11.2230;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.354;QD=20.84;ReadPosRankSum=2.394;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3710,393,0 chrX 297732 . T G 5055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=13.7934;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.214;QD=22.87;ReadPosRankSum=1.653;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:5055,546,0 chrX 297958 . C T 3551.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.06;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3551,367,0 chrX 297976 . C T 3175 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.05;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3208,339,0 chrX 298522 . G C 3672.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.1055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3672,393,0 chrX 299526 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3623,396,0 chrX 299730 . C A 3108 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3141,327,0 chrX 299824 . C T 3961.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.9954;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3961,409,0 chrX 300158 . T G 4805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=16.1953;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.056;QD=25.97;ReadPosRankSum=1.694;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4805,505,0 chrX 300626 . C T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.47;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3379,346,0 chrX 301442 . G T 3587.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3587,367,0 chrX 301584 . A G 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.5827;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.289;QD=22.72;ReadPosRankSum=1.621;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3589,390,0 chrX 301867 . T C 3474.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.63;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3474,369,0 chrX 303269 . A G 3864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.5645;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.310;QD=23.56;ReadPosRankSum=1.690;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3864,417,0 chrX 303316 . C A 3983.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.4396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,162:166:99:3983,412,0 chrX 305977 . G T 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=163;Dels=0.00;FS=3.743;HaplotypeScore=15.9360;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.711;QD=24.88;ReadPosRankSum=0.764;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:4056,427,0 chrX 306632 . G A 4070.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.60;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4070,429,0 chrX 306704 . T C 3727.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.01;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3727,399,0 chrX 307100 . C T 3401.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.6386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3401,357,0 chrX 307300 . C T 4087.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4087,424,0 chrX 308827 . C G 1932 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1965,207,0 chrX 314133 . C T 5759.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.60;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5759,583,0 chrX 315237 . T C 6875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=301;Dels=0.00;FS=6.057;HaplotypeScore=13.3100;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.670;QD=22.84;ReadPosRankSum=2.917;SB=-3.779e+03 GT:AD:DP:GQ:PL 1/1:3,298:301:99:6875,750,0 chrX 316285 . A G 6529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=21.4861;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.145;QD=23.49;ReadPosRankSum=1.682;SB=-3.398e+03 GT:AD:DP:GQ:PL 1/1:1,274:278:99:6529,697,0 chrX 316535 . C T 6478.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=15.7466;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.45;SB=-3.572e+03 GT:AD:DP:GQ:PL 1/1:0,262:265:99:6478,667,0 chrX 316571 . G T 6190.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.59;SB=-3.561e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6190,640,0 chrX 316590 . T C 6111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.285;QD=21.22;ReadPosRankSum=2.349;SB=-3.596e+03 GT:AD:DP:GQ:PL 1/1:3,283:288:99:6111,655,0 chrX 319272 . C T 2446 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.52;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2479,261,0 chrX 320186 . G A 4859.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.2407;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.54;SB=-2.705e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4859,516,0 chrX 320259 . C T 4341.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.9312;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4341,448,0 chrX 320645 . A T 5635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.305;QD=22.54;ReadPosRankSum=1.649;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:1,249:250:99:5635,583,0 chrX 323030 . G A 5090.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.5053;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=25.07;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5090,523,0 chrX 323069 . A G 4794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=195;Dels=0.00;FS=7.726;HaplotypeScore=11.8422;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-0.728;QD=24.58;ReadPosRankSum=2.424;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4794,499,0 chrX 323146 . T C 3126 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=24.05;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3159,333,0 chrX 323294 . G A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=23.00;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3749,382,0 chrX 323313 . G A 2714 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.37;MQ0=0;QD=20.41;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2747,285,0 chrX 323314 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.37;MQ0=0;QD=20.83;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2803,291,0 chrX 323341 . C T 1783 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=0;QD=15.78;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1816,192,0 chrX 323357 . C T 1755 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;QD=15.00;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1788,186,0 chrX 323361 . T C 1663 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;QD=14.72;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1696,183,0 chrX 323385 . A G 2193 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.5770;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=16.49;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2226,249,0 chrX 323463 . C T 2880 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.80;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2913,315,0 chrX 323601 . C G 3894.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=23.18;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3894,426,0 chrX 323637 . G A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.76;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3504,378,0 chrX 323703 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=149;Dels=0.00;FS=2.906;HaplotypeScore=9.5618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.868;QD=21.65;ReadPosRankSum=2.416;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3258,351,0 chrX 323802 . C T 4193.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.2939;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.79;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4193,439,0 chrX 323895 . T C 4286.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.6298;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.08;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4286,451,0 chrX 324264 . T C 3945.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=15.0933;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.76;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3945,438,0 chrX 324432 . A C 3010 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.47;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:3043,324,0 chrX 324627 . T C 1664 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1697,189,0 chrX 324792 . G A 1865 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.64;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1898,195,0 chrX 324830 . T A 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.184;QD=26.01;ReadPosRankSum=2.353;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:2010,210,0 chrX 325332 . G A 2420 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2453,264,0 chrX 325369 . A C 2479 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.79;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2512,264,0 chrX 325435 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.3926;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.06;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3266,336,0 chrX 325505 . A T 4399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=4.921;HaplotypeScore=9.4159;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.636;QD=24.85;ReadPosRankSum=1.693;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4399,454,0 chrX 325758 . A G 4852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.212;DP=212;Dels=0.00;FS=12.590;HaplotypeScore=18.2286;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.947;QD=22.89;ReadPosRankSum=3.419;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:4,207:212:99:4852,514,0 chrX 325803 . C T 4488.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.66;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4488,460,0 chrX 325860 . G A 3794.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3794,402,0 chrX 325946 . A G 5557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=232;Dels=0.00;FS=3.163;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.299;QD=23.95;ReadPosRankSum=1.702;SB=-3.013e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5557,612,0 chrX 326091 . C G 4247.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.78;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4247,471,0 chrX 326293 . T C 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.636;DP=186;Dels=0.00;FS=12.217;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.868;QD=21.68;ReadPosRankSum=3.763;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:6,180:186:99:4032,426,0 chrX 326422 . G A 4318.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.2125;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.60;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4318,454,0 chrX 326497 . A G 3055 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.92;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3088,327,0 chrX 326617 . C T 2683 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1545;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.36;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2716,279,0 chrX 326683 . A G 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=140;Dels=0.00;FS=2.984;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.659;QD=20.71;ReadPosRankSum=2.415;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2932,318,0 chrX 326715 . T C 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=3.399;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.270;QD=20.92;ReadPosRankSum=1.666;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2250,246,0 chrX 326989 . G A 3581.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.22;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3581,364,0 chrX 327501 . C T 4956.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.29;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4956,508,0 chrX 327718 . T C 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=175;Dels=0.00;FS=7.242;HaplotypeScore=10.3494;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.321;QD=21.76;ReadPosRankSum=2.392;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:2,170:175:99:3808,417,0 chrX 327809 . C G 3750.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=17.8605;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.80;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,166:171:99:3750,399,0 chrX 327851 . A G 3108 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.29;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3141,336,0 chrX 327946 . C G 2308 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=22.63;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2341,258,0 chrX 327986 . G C 3086 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.20;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,135:139:99:3119,336,0 chrX 328162 . C T 2737 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=27.37;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2770,282,0 chrX 328274 . G T 2960 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.31;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2993,318,0 chrX 328451 . A G 3087 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.21;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3120,348,0 chrX 328739 . G A 4985.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.9650;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.44;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4985,511,0 chrX 328877 . G T 4194.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.92;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4194,430,0 chrX 329090 . A G 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.0614;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.164;QD=22.43;ReadPosRankSum=1.713;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4128,450,0 chrX 329192 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.2347;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.37;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3409,366,0 chrX 329329 . C G 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;DP=168;Dels=0.00;FS=8.000;HaplotypeScore=289.6349;MLEAC=1;MLEAF=0.500;MQ=55.74;MQ0=0;MQRankSum=0.514;QD=0.16;ReadPosRankSum=-3.205;SB=-1.520e+02 GT:AD:DP:GQ:PL 0/1:161,4:168:56:57,0,56 chrX 329730 . G A 3803.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3803,408,0 chrX 329858 . T C 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.092;QD=23.14;ReadPosRankSum=1.650;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3911,417,0 chrX 329903 . C T 4645.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.7170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4645,490,0 chrX 330001 . T C 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=186;Dels=0.00;FS=3.504;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.242;QD=22.70;ReadPosRankSum=1.713;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4223,456,0 chrX 330050 . A G 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.6930;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.215;QD=23.65;ReadPosRankSum=1.712;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3997,432,0 chrX 330144 . C T 2804 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=9.3868;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.61;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2837,294,0 chrX 330191 . A G 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=6.2031;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.924;QD=19.66;ReadPosRankSum=1.703;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2412,273,0 chrX 330372 . T A 2403 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.77;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2436,246,0 chrX 330470 . C G 2555 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.02;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2588,276,0 chrX 330557 . C T 2388 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2421,252,0 chrX 330767 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=24.41;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3808,391,0 chrX 331030 . C G 3488.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.97;MQ0=0;QD=17.35;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:3488,372,0 chrX 331031 . T A 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=3.402;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=0;MQRankSum=-1.222;QD=18.31;ReadPosRankSum=1.714;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3607,376,0 chrX 331044 . T G 3333.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=213;Dels=0.00;FS=6.857;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.38;MQ0=0;MQRankSum=-0.801;QD=15.65;ReadPosRankSum=2.415;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:3333,360,0 chrX 331047 . T C 3003 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.413;DP=220;Dels=0.00;FS=13.842;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.23;MQ0=0;MQRankSum=-3.008;QD=13.65;ReadPosRankSum=3.373;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:4,216:220:99:3036,342,0 chrX 331050 . G A 3293.01 SnpCluster AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.77;MQ0=0;QD=14.90;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:3293,348,0 chrX 331064 . G A 3930.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=10.7450;MLEAC=2;MLEAF=1.00;MQ=38.71;MQ0=0;QD=16.72;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:3930,414,0 chrX 331109 . A C 4628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.3249;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=1.250;QD=19.53;ReadPosRankSum=1.717;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:4628,501,0 chrX 331412 . G A 4653.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.71;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4653,498,0 chrX 331639 . C T 5008.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.67;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5008,520,0 chrX 331811 . A G 4717.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.9834;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.15;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4717,531,0 chrX 331934 . C T 4125.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.7132;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.98;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4125,433,0 chrX 332162 . G A 6312.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=12.5230;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.66;SB=-3.055e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:6312,673,0 chrX 332541 . G A 3157 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.8468;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.55;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3190,333,0 chrX 332595 . A C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.96;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3269,363,0 chrX 332597 . G A 3515.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=22.11;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3515,358,0 chrX 332621 . A G 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.358;QD=20.81;ReadPosRankSum=1.674;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3745,402,0 chrX 332665 . A T 4401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.747;QD=22.34;ReadPosRankSum=1.714;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4401,471,0 chrX 332693 . A G 5047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=225;Dels=0.00;FS=8.673;HaplotypeScore=18.6072;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.028;QD=22.43;ReadPosRankSum=2.393;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:2,218:225:99:5047,555,0 chrX 333075 . A G 5816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.729;DP=307;Dels=0.00;FS=9.279;HaplotypeScore=33.1955;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.608;QD=18.94;ReadPosRankSum=4.486;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:9,295:307:99:5816,611,0 chrX 333136 . C T 5553.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=21.3146;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.36;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5553,577,0 chrX 333412 . A G 5346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=240;Dels=0.00;FS=3.009;HaplotypeScore=22.8717;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.645;QD=22.28;ReadPosRankSum=2.408;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:2,236:240:99:5346,574,0 chrX 334125 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=15.6648;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.53;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3263,334,0 chrX 334204 . A G 4752.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=17.5952;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.41;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4752,519,0 chrX 334264 . C T 4513.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=25.07;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4513,472,0 chrX 334291 . T C 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.7565;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.051;QD=24.68;ReadPosRankSum=2.421;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:2,167:171:99:4221,456,0 chrX 334526 . A G 4596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.144;DP=211;Dels=0.00;FS=2.978;HaplotypeScore=21.4426;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.664;QD=21.78;ReadPosRankSum=2.332;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:2,208:211:99:4596,507,0 chrX 334681 . A G 4731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=211;Dels=0.00;FS=2.930;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.871;QD=22.42;ReadPosRankSum=2.379;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:2,208:211:99:4731,496,0 chrX 334858 . C T 5113.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.35;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:0,206:210:99:5113,532,0 chrX 335148 . C T 3593.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8634;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.95;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3593,370,0 chrX 335249 . T C 3288.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3288,348,0 chrX 335788 . C A 1251 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1284,135,0 chrX 336383 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.30;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4034,415,0 chrX 336512 . C T 5589.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.0910;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.24;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5589,583,0 chrX 336551 . C T 4173.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.69;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4173,441,0 chrX 336583 . C G 3133 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.17;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3166,339,0 chrX 336725 . G A 5456.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.69;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5456,568,0 chrX 336755 . G A 5235.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.3317;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.46;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:5235,535,0 chrX 336944 . T C 3662.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.93;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3662,396,0 chrX 337050 . T A 3933.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.7064;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.84;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3933,403,0 chrX 337087 . C T 4188.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=24.07;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4188,439,0 chrX 337133 . A G 3878.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3878,408,0 chrX 337222 . A C 2644 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.4052;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.40;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2677,294,0 chrX 337263 . A C 3046 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.08;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3079,330,0 chrX 337345 . A C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=147;Dels=0.00;FS=2.903;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.160;QD=21.41;ReadPosRankSum=2.365;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3180,342,0 chrX 337436 . A T 2773 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.01;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2806,306,0 chrX 337468 . G A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=14.5157;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.12;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3445,369,0 chrX 337551 . T C 6164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.708;QD=24.76;ReadPosRankSum=2.370;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:2,246:249:99:6164,664,0 chrX 337579 . C T 5332.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.2985;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.57;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5332,550,0 chrX 337727 . A T 5196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=236;Dels=0.00;FS=2.837;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.056;QD=22.02;ReadPosRankSum=2.408;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:5196,529,0 chrX 338993 . T C 7757.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=406;Dels=0.00;FS=3.827;HaplotypeScore=15.3648;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=10;MQRankSum=-0.261;QD=19.11;ReadPosRankSum=1.679;SB=-4.165e+03 GT:AD:DP:GQ:PL 1/1:7,394:406:99:7757,864,0 chrX 339013 . A C 8048.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.318;DP=389;Dels=0.00;FS=7.943;HaplotypeScore=12.4253;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=1;MQRankSum=0.493;QD=20.69;ReadPosRankSum=3.250;SB=-4.007e+03 GT:AD:DP:GQ:PL 1/1:5,382:389:99:8048,871,0 chrX 339050 . T C 6001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=292;Dels=0.00;FS=7.430;HaplotypeScore=25.3736;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.847;QD=20.55;ReadPosRankSum=2.382;SB=-3.273e+03 GT:AD:DP:GQ:PL 1/1:2,289:292:99:6001,651,0 chrX 339346 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.36;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3598,384,0 chrX 339426 . C T 3020 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=21.73;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3053,333,0 chrX 339429 . T C 2901 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;QD=21.18;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2934,324,0 chrX 339446 . T A 2318 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=44.61;MQ0=0;QD=17.43;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2351,258,0 chrX 339451 . G A 2533 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.5646;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;QD=19.19;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2566,270,0 chrX 339493 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=20.29;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2549,264,0 chrX 339512 . A T 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=132;Dels=0.00;FS=7.976;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-1.053;QD=20.33;ReadPosRankSum=2.357;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2716,285,0 chrX 339657 . C T 3851.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=23.20;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3851,397,0 chrX 339669 . C G 3451.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.2021;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=20.54;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3451,387,0 chrX 339996 . T G 4541.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.83;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4541,489,0 chrX 340014 . T C 4732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=222;Dels=0.00;FS=3.401;HaplotypeScore=6.6988;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-1.701;QD=21.32;ReadPosRankSum=1.701;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:4732,507,0 chrX 340095 . C T 4736.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4736,487,0 chrX 340465 . T G 2684 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2717,297,0 chrX 340737 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2801,288,0 chrX 340947 . G A 4445.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.8490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.94;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4445,454,0 chrX 341102 . T C 4182.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.03;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4182,442,0 chrX 341290 . C T 4153.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.4716;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.69;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4153,424,0 chrX 341296 . G A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.7687;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.05;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3880,411,0 chrX 341422 . C G 4894.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.49;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4894,531,0 chrX 341566 . A G 4795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.298;QD=22.20;ReadPosRankSum=1.700;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4795,522,0 chrX 341586 . T C 4465.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.78;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4465,489,0 chrX 341797 . G A 3519.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.7654;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.27;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3519,367,0 chrX 341843 . A G 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=3.348;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.766;QD=24.65;ReadPosRankSum=1.709;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3624,378,0 chrX 342013 . C T 3988.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.32;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3988,423,0 chrX 342290 . T C 2310 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.79;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2343,255,0 chrX 342355 . T G 112.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.829;DP=91;Dels=0.00;FS=6.628;HaplotypeScore=208.0139;MLEAC=1;MLEAF=0.500;MQ=55.10;MQ0=0;MQRankSum=0.353;QD=1.23;ReadPosRankSum=-3.066;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:70,21:91:99:142,0,111 chrX 342360 . T G 205.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;DP=99;Dels=0.00;FS=8.020;HaplotypeScore=212.6306;MLEAC=1;MLEAF=0.500;MQ=55.26;MQ0=0;MQRankSum=0.656;QD=2.07;ReadPosRankSum=4.995;SB=-6.540e+02 GT:AD:DP:GQ:PL 0/1:24,73:99:63:235,0,63 chrX 342457 . C G 2693 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.26;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2726,291,0 chrX 342479 . T C 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.063;QD=24.25;ReadPosRankSum=2.399;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2385,255,0 chrX 342505 . T C 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=1.292;QD=22.58;ReadPosRankSum=1.673;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2698,285,0 chrX 342558 . A G 3213.98 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=26.13;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3247,342,0 chrX 342851 . C T 5261.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=16.8555;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.29;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:5261,544,0 chrX 342956 . A T 5008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.349;QD=23.08;ReadPosRankSum=1.652;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:5008,523,0 chrX 343412 . A G 5842.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=12.8976;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-2.933e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5842,651,0 chrX 343445 . A G 6012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=252;Dels=0.00;FS=7.511;HaplotypeScore=19.1062;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.210;QD=23.86;ReadPosRankSum=2.391;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:2,249:252:99:6012,634,0 chrX 343603 . G A 5229.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.10;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5229,538,0 chrX 343823 . T C 3974.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.08;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3974,438,0 chrX 343856 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=21.73;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3249,339,0 chrX 343871 . A G 3036 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.79;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3069,330,0 chrX 343920 . T C 3545.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.88;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3545,375,0 chrX 344394 . C T 4678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.3494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.58;ReadPosRankSum=-0.518;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:4678,478,0 chrX 344460 . C T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.98;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3669,390,0 chrX 344732 . T C 3463.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.25;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3463,366,0 chrX 344747 . A C 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.6304;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.717;QD=21.19;ReadPosRankSum=1.652;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3687,396,0 chrX 345062 . A T 4681.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.86;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4681,484,0 chrX 345146 . C G 4097.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.5188;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.64;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4097,456,0 chrX 345365 . C T 5468.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.3956;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.79;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5468,562,0 chrX 345831 . T A 1111 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;QD=22.67;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1144,123,0 chrX 346488 . T C 3060 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.3905;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.17;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3093,336,0 chrX 346495 . G A 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.463;DP=131;Dels=0.00;FS=4.838;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.383;QD=21.79;ReadPosRankSum=0.198;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2887,303,0 chrX 346643 . C T 3602.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.29;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3602,364,0 chrX 346735 . C T 3154 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=24.64;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3187,330,0 chrX 346858 . T C 4311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.183;QD=26.45;ReadPosRankSum=1.711;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:4311,462,0 chrX 347852 . G A 4352.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4352,465,0 chrX 347951 . T A 5289.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.0331;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.67;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5289,544,0 chrX 348200 . G A 4348.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.29;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4348,451,0 chrX 348292 . A G 5299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=207;Dels=0.00;FS=13.879;HaplotypeScore=11.4594;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.665;QD=25.60;ReadPosRankSum=2.918;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:5299,559,0 chrX 348584 . A G 3023 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.63;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3056,327,0 chrX 348652 . A G 3515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.228;QD=21.17;ReadPosRankSum=1.711;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3515,378,0 chrX 348689 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.00;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2871,297,0 chrX 348750 . C T 1794 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=19.50;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1827,189,0 chrX 348753 . C A 1825 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=18.62;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1858,189,0 chrX 348770 . T C 2167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;MQRankSum=0.302;QD=18.36;ReadPosRankSum=2.366;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2200,240,0 chrX 348957 . C T 3192 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=24.00;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3225,336,0 chrX 348976 . A G 3305.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=21.05;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3305,351,0 chrX 348978 . C T 3327.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=20.66;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3327,337,0 chrX 349384 . C T 4431.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.84;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4431,469,0 chrX 349396 . T A 4266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=191;Dels=0.00;FS=11.532;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.675;QD=22.34;ReadPosRankSum=2.411;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4266,451,0 chrX 349640 . G A 4090.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.25;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4090,441,0 chrX 349864 . G A 4193.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.7909;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.73;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4193,442,0 chrX 349943 . A G 4803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=198;Dels=0.00;FS=2.962;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.764;QD=24.26;ReadPosRankSum=2.300;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:4803,516,0 chrX 350351 . G A 4460.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=16.3813;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.11;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4460,475,0 chrX 350420 . C G 3309.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3309,348,0 chrX 350651 . G A 2758 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.6586;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2791,294,0 chrX 350741 . T G 2850 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2883,306,0 chrX 350771 . G A 3707.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.23;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3707,396,0 chrX 350948 . A G 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=6.358;HaplotypeScore=12.0606;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.042;QD=23.15;ReadPosRankSum=2.416;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3380,378,0 chrX 351163 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.42;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3654,376,0 chrX 351707 . T C 3371.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.43;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3371,372,0 chrX 351731 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=3.069;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.796;QD=23.41;ReadPosRankSum=1.685;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3488,372,0 chrX 352052 . C A 3456.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.60;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3456,369,0 chrX 352322 . G A 4330.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=16.5426;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.66;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4330,448,0 chrX 352608 . G A 4503.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=24.21;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4503,463,0 chrX 352620 . G C 3847.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.25;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,173:181:99:3847,414,0 chrX 353165 . C T 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.111;QD=25.39;ReadPosRankSum=-0.874;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2826,300,0 chrX 353330 . T C 2446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.119;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-0.215;QD=20.21;ReadPosRankSum=1.618;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2479,273,0 chrX 353336 . G A 2520 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=21.36;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2553,270,0 chrX 353471 . C T 2781 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.57;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2814,291,0 chrX 353747 . T C 2237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=6.229;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=0.128;QD=21.10;ReadPosRankSum=2.403;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2270,243,0 chrX 353754 . G A 2412 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=22.13;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2445,246,0 chrX 353805 . C T 2375 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=21.21;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2408,249,0 chrX 353826 . T C 2206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=6.673;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;MQRankSum=-0.344;QD=18.69;ReadPosRankSum=2.408;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2239,240,0 chrX 353839 . A G 2232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=116;Dels=0.00;FS=6.366;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;MQRankSum=0.117;QD=19.24;ReadPosRankSum=2.407;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2265,243,0 chrX 353862 . C T 2086 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=18.62;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2119,213,0 chrX 353900 . G C 1667 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;QD=14.88;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1700,177,0 chrX 354233 . A G 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.487;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=0.586;QD=22.88;ReadPosRankSum=1.678;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2939,309,0 chrX 354367 . A G 2049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=101;Dels=0.00;FS=2.591;HaplotypeScore=6.1226;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=0.270;QD=20.29;ReadPosRankSum=2.911;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:3,98:101:99:2082,225,0 chrX 354442 . A G 1897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=0.126;QD=21.56;ReadPosRankSum=2.254;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1930,207,0 chrX 354638 . G A 588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=37;Dels=0.00;FS=41.209;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=0;MQRankSum=2.066;QD=15.89;ReadPosRankSum=-0.733;SB=-3.022e+00 GT:AD:DP:GQ:PL 1/1:5,32:37:3:618,3,0 chrX 354706 . T C 100.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.123;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=26.75;MQ0=2;MQRankSum=-0.919;QD=5.28;ReadPosRankSum=1.327;SB=-7.976e+01 GT:AD:DP:GQ:PL 1/1:2,17:19:15:133,15,0 chrX 354846 . A T 1167 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.15;MQ0=0;QD=25.93;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1200,129,0 chrX 354886 . T G 420 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=15.56;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,25:27:54:453,54,0 chrX 354888 . T G 410 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=0;MQRankSum=-0.509;QD=15.19;ReadPosRankSum=2.176;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:2,25:27:54:443,54,0 chrX 354890 . A T 434 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;MQRankSum=-0.933;QD=16.69;ReadPosRankSum=0.933;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:54:467,54,0 chrX 354897 . A T 447 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.462;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;MQRankSum=-0.462;QD=14.90;ReadPosRankSum=-0.116;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:31:480,31,0 chrX 354975 . T C 1408 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=5;QD=16.56;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:4,81:85:99:1441,159,0 chrX 355002 . A G 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.137;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=3;MQRankSum=0.187;QD=17.27;ReadPosRankSum=1.306;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:5,97:102:99:1795,181,0 chrX 355129 . C T 2360 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=21.07;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2393,249,0 chrX 356479 . G A 5066.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.56;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5066,520,0 chrX 357352 . A G 7162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=327;Dels=0.00;FS=2.928;HaplotypeScore=25.7611;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.322;QD=21.90;ReadPosRankSum=2.411;SB=-3.415e+03 GT:AD:DP:GQ:PL 1/1:2,320:327:99:7162,795,0 chrX 357835 . A G 2243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.239;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.862;QD=21.36;ReadPosRankSum=3.256;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:4,101:105:99:2276,249,0 chrX 357838 . A G 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.157;QD=20.35;ReadPosRankSum=1.638;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2272,252,0 chrX 358040 . G C 571 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.06;MQ0=0;QD=8.52;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:69:604,69,0 chrX 358190 . T C 850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=52;Dels=0.00;FS=2.781;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;MQRankSum=-0.785;QD=16.35;ReadPosRankSum=2.308;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:96:883,96,0 chrX 358208 . C G 715 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=23.3889;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;QD=13.49;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:81:748,81,0 chrX 358315 . C T 1949 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.8987;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.92;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1982,204,0 chrX 358354 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.64;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2817,297,0 chrX 358391 . G C 2851 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.9092;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.79;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2884,306,0 chrX 358552 . A G 4061.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.94;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4061,453,0 chrX 358755 . C T 3666.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.9188;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.96;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3666,379,0 chrX 358813 . G A 3933.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.69;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3933,423,0 chrX 358909 . T C 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.4460;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.571;QD=22.08;ReadPosRankSum=1.705;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2904,324,0 chrX 358957 . A G 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=113;Dels=0.00;FS=5.177;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.773;QD=24.43;ReadPosRankSum=1.701;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2794,303,0 chrX 359074 . A G 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=155;Dels=0.00;FS=12.501;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.565;QD=24.41;ReadPosRankSum=2.890;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3784,402,0 chrX 359251 . C T 5870.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.66;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5870,625,0 chrX 359301 . T G 6085.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=13.3621;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.202;QD=24.34;ReadPosRankSum=1.663;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:1,248:250:99:6085,655,0 chrX 359404 . T C 4929.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.06;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,231:234:99:4929,540,0 chrX 359445 . C T 5689.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=16.6911;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.41;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5689,589,0 chrX 359859 . G T 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=13.9819;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.300;QD=14.51;ReadPosRankSum=1.466;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:2,104:108:99:1600,177,0 chrX 360017 . G A 2501 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.59;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2534,258,0 chrX 360052 . A C 2382 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=14.1506;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.26;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,103:107:99:2415,258,0 chrX 360186 . T C 4404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.489;QD=23.55;ReadPosRankSum=1.713;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,183:187:99:4404,474,0 chrX 360306 . T C 3798.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=23.59;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3798,414,0 chrX 360317 . G A 4346.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=24.01;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4346,442,0 chrX 360333 . G A 4753.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.0497;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.80;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4753,490,0 chrX 360588 . G A 9715.01 filter AC=2;AF=1.00;AN=2;DP=399;Dels=0.00;FS=0.000;HaplotypeScore=36.3745;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.35;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,397:399:99:9715,1003,0 chrX 360746 . T C 7460.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=371;Dels=0.00;FS=18.134;HaplotypeScore=20.3762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.342;QD=20.11;ReadPosRankSum=2.948;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:3,364:371:99:7460,793,0 chrX 361124 . A G 4998.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.6395;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.64;SB=-2.925e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:4998,552,0 chrX 361340 . G C 6488.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=9.9589;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=23.34;SB=-3.543e+03 GT:AD:DP:GQ:PL 1/1:0,276:278:99:6488,697,0 chrX 361362 . A G 6463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=284;Dels=0.00;FS=9.406;HaplotypeScore=14.4813;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=-1.862;QD=22.76;ReadPosRankSum=2.933;SB=-3.672e+03 GT:AD:DP:GQ:PL 1/1:3,280:284:99:6463,688,0 chrX 361485 . T C 8095.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.422;DP=392;Dels=0.00;FS=5.210;HaplotypeScore=18.3118;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.663;QD=20.65;ReadPosRankSum=3.369;SB=-3.972e+03 GT:AD:DP:GQ:PL 1/1:4,388:392:99:8095,874,0 chrX 361518 . T C 8007.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=436;Dels=0.00;FS=5.629;HaplotypeScore=11.0570;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=0.786;QD=18.36;ReadPosRankSum=2.952;SB=-4.630e+03 GT:AD:DP:GQ:PL 1/1:3,433:436:99:8007,871,0 chrX 361532 . C T 7768.01 filter AC=2;AF=1.00;AN=2;DP=425;Dels=0.00;FS=0.000;HaplotypeScore=7.8004;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=18.28;SB=-4.909e+03 GT:AD:DP:GQ:PL 1/1:0,423:425:99:7768,814,0 chrX 361557 . C T 6416.01 filter AC=2;AF=1.00;AN=2;DP=374;Dels=0.00;FS=0.000;HaplotypeScore=14.5592;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=17.16;SB=-3.796e+03 GT:AD:DP:GQ:PL 1/1:0,374:374:99:6416,679,0 chrX 361967 . T C 5207.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.2086;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.88;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5207,579,0 chrX 362118 . A G 5193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=227;Dels=0.00;FS=6.473;HaplotypeScore=21.0039;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.444;QD=22.88;ReadPosRankSum=2.417;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:2,225:227:99:5193,550,0 chrX 362153 . C T 5225.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.19;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5225,544,0 chrX 362196 . A G 4307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.699;DP=208;Dels=0.00;FS=28.079;HaplotypeScore=18.1953;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.235;QD=20.71;ReadPosRankSum=3.813;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:5,201:208:99:4307,456,0 chrX 362316 . A G 4748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=233;Dels=0.00;FS=3.143;HaplotypeScore=13.3761;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.078;QD=20.38;ReadPosRankSum=1.717;SB=-2.945e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:4748,528,0 chrX 362838 . C G 6584.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=18.7095;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.63;SB=-3.404e+03 GT:AD:DP:GQ:PL 1/1:0,288:291:99:6584,732,0 chrX 362886 . T C 6569.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=23.8506;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-3.899e+03 GT:AD:DP:GQ:PL 1/1:0,301:304:99:6569,709,0 chrX 363087 . G A 6554.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=15.8040;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.99;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:0,297:298:99:6554,702,0 chrX 363678 . T C 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=183;Dels=0.00;FS=6.089;HaplotypeScore=14.1845;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.951;QD=22.81;ReadPosRankSum=2.962;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:3,180:183:99:4174,462,0 chrX 363723 . C T 3090 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=17.86;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3123,336,0 chrX 363726 . C T 3081 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.8262;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=17.71;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3114,324,0 chrX 363767 . A G 3119 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.2998;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=17.93;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3152,351,0 chrX 364028 . T C 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=141;Dels=0.00;FS=2.879;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.416;QD=24.06;ReadPosRankSum=2.379;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,137:141:99:3392,369,0 chrX 364146 . C T 4186.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.1079;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=25.37;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4186,441,0 chrX 364186 . A G 3740.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=25.27;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3740,396,0 chrX 364397 . G A 4777.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.77;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4777,493,0 chrX 364407 . A G 4497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.347;DP=202;Dels=0.00;FS=16.427;HaplotypeScore=10.7052;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.447;QD=22.26;ReadPosRankSum=3.252;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:4,197:202:99:4497,478,0 chrX 364569 . T C 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=164;Dels=0.00;FS=11.013;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=1.951;QD=22.39;ReadPosRankSum=1.338;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3672,386,0 chrX 364721 . G A 5375.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.9111;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.10;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5375,556,0 chrX 364761 . T C 4642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=200;Dels=0.00;FS=2.997;HaplotypeScore=16.1689;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.725;QD=23.21;ReadPosRankSum=2.376;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4642,499,0 chrX 364850 . G T 5475.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.2217;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.33;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:5475,562,0 chrX 364938 . T C 4668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=218;Dels=0.00;FS=10.980;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.653;QD=21.41;ReadPosRankSum=2.903;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:3,214:218:99:4668,499,0 chrX 365022 . G A 5824.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.97;SB=-3.054e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5824,627,0 chrX 365255 . C T 5019.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.25;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:5019,523,0 chrX 365807 . G C 2856 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.62;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2889,309,0 chrX 366123 . C T 5547.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.3727;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.65;SB=-2.947e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5547,580,0 chrX 366400 . T C 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=180;Dels=0.00;FS=7.074;HaplotypeScore=21.4135;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=1.822;QD=19.18;ReadPosRankSum=2.395;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3453,369,0 chrX 366482 . A C 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=163;Dels=0.00;FS=6.095;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-0.176;QD=15.06;ReadPosRankSum=2.881;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:3,157:163:99:2488,267,0 chrX 366492 . T C 2468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=164;Dels=0.00;FS=6.061;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=1.204;QD=15.05;ReadPosRankSum=2.908;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:3,160:164:99:2501,267,0 chrX 366671 . C A 3836.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.6439;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=22.83;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3836,397,0 chrX 366673 . A G 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=3.029;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=-1.137;QD=22.55;ReadPosRankSum=2.373;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:3675,396,0 chrX 366855 . A G 4775.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.296;DP=233;Dels=0.00;FS=32.361;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=8;MQRankSum=4.187;QD=20.49;ReadPosRankSum=5.611;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:19,214:233:99:4775,522,0 chrX 366915 . G A 2326 filter AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.8128;MLEAC=2;MLEAF=1.00;MQ=24.43;MQ0=7;QD=14.45;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2359,246,0 chrX 366927 . C T 1889 filter AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.99;MQ0=6;QD=12.43;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:1922,204,0 chrX 366948 . G A 1133 filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.7853;MLEAC=2;MLEAF=1.00;MQ=19.87;MQ0=7;QD=8.39;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:1166,123,0 chrX 366966 . C T 1184 filter AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=14.4066;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=8;QD=8.34;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:1217,132,0 chrX 367017 . T C 3132 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=175;Dels=0.00;FS=10.962;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=5;MQRankSum=-0.671;QD=17.90;ReadPosRankSum=2.934;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:3,170:175:99:3165,348,0 chrX 367200 . G A 2723 filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.3856;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=6;QD=18.40;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2756,285,0 chrX 367212 . C T 3030 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.9780;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=1;QD=17.41;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3063,318,0 chrX 367284 . C T 4471.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=20.32;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4471,469,0 chrX 367390 . A G 3470.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.8148;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=0;QD=17.98;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3470,387,0 chrX 367399 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.406;DP=193;Dels=0.00;FS=18.135;HaplotypeScore=5.2727;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;MQRankSum=1.980;QD=17.58;ReadPosRankSum=2.652;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:5,186:193:99:3392,366,0 chrX 367417 . G A 3204 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=18.63;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3237,354,0 chrX 367566 . G T 4627.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.23;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4627,478,0 chrX 367594 . G A 4405.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.6856;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.43;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4405,457,0 chrX 367662 . G T 3476.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.1101;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.43;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3476,358,0 chrX 368795 . G A 3868.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.95;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3868,400,0 chrX 369324 . C T 2545 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2578,276,0 chrX 369426 . T C 2604 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.04;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2637,291,0 chrX 369507 . T C 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8174;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.449;QD=23.32;ReadPosRankSum=1.655;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3181,339,0 chrX 369900 . T C 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.493;QD=23.72;ReadPosRankSum=1.709;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3581,384,0 chrX 370407 . T C 4087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=188;Dels=0.00;FS=9.821;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.150;QD=21.74;ReadPosRankSum=2.963;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:4087,441,0 chrX 370550 . G T 4589.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4589,481,0 chrX 371571 . T A 2948 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.4273;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.16;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2981,309,0 chrX 372444 . C T 4503.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.61;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4503,466,0 chrX 372476 . T C 4071.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.53;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4071,441,0 chrX 372585 . T C 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=154;Dels=0.00;FS=3.032;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.205;QD=23.86;ReadPosRankSum=2.322;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3674,399,0 chrX 372699 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.3331;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.90;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3177,339,0 chrX 373143 . A G 1113 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1146,132,0 chrX 373251 . T C 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.8441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.354;QD=24.50;ReadPosRankSum=1.693;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2189,240,0 chrX 373527 . A G 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=154;Dels=0.00;FS=3.396;HaplotypeScore=11.2910;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.532;QD=24.58;ReadPosRankSum=1.709;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3786,405,0 chrX 373775 . G C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3267,363,0 chrX 374196 . T C 1399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;MQRankSum=0.274;QD=18.17;ReadPosRankSum=1.687;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1432,156,0 chrX 374244 . C T 1843 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=20.48;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1876,189,0 chrX 374306 . A G 1205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;MQRankSum=-0.632;QD=18.83;ReadPosRankSum=1.677;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1238,138,0 chrX 374317 . C A 1458 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=21.76;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1491,153,0 chrX 374343 . G A 1215 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=0;QD=17.61;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1248,129,0 chrX 374407 . G A 1549 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=17.21;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1582,168,0 chrX 374408 . G C 1470 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=0;QD=16.90;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1503,165,0 chrX 374592 . G T 2837 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.4332;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=4;MQRankSum=0.488;QD=19.43;ReadPosRankSum=1.537;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2870,300,0 chrX 374607 . T C 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;MQRankSum=-1.568;QD=18.97;ReadPosRankSum=1.709;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2859,309,0 chrX 374624 . T C 2457 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=18.61;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2490,270,0 chrX 374664 . G A 1721 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=16.39;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1754,183,0 chrX 374698 . C T 1467 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=15.95;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1500,162,0 chrX 374699 . G A 1602 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=17.41;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1635,168,0 chrX 374928 . C T 1449 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=23.75;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1482,153,0 chrX 375069 . G C 2059 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=22.63;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2092,231,0 chrX 375079 . T C 1687 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=20.83;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1720,189,0 chrX 375100 . G A 1443 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=19.77;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1476,153,0 chrX 375290 . T C 1868 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=7.6440;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=17.79;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1901,204,0 chrX 375298 . C T 1918 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.77;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1951,204,0 chrX 375392 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.73;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3260,337,0 chrX 375438 . C T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3330,348,0 chrX 375921 . T G 619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.171;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.234;QD=16.73;ReadPosRankSum=1.639;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:69:652,69,0 chrX 375929 . G A 799 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=18.58;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:832,90,0 chrX 375981 . T C 1481 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.10;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1514,165,0 chrX 376048 . T A 1976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.046;QD=26.00;ReadPosRankSum=1.687;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:2009,204,0 chrX 376071 . C T 1773 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.62;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1806,186,0 chrX 376279 . A T 1534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.4286;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=1.436;QD=18.71;ReadPosRankSum=-0.380;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1567,174,0 chrX 376316 . C T 1444 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.06;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1477,156,0 chrX 376379 . A G 1579 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.88;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1612,174,0 chrX 377108 . T C 3717.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.1902;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.29;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3717,396,0 chrX 377543 . C T 2619 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.5302;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=26.45;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2652,276,0 chrX 377632 . T A 3646.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=26.23;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3646,379,0 chrX 377731 . T G 3342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.084;DP=165;Dels=0.00;FS=12.533;HaplotypeScore=14.8901;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.863;QD=20.25;ReadPosRankSum=3.406;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:4,159:165:99:3342,366,0 chrX 377783 . G T 4335.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.70;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4335,451,0 chrX 377800 . A T 4526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=201;Dels=0.00;FS=3.565;HaplotypeScore=5.2460;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=1.178;QD=22.52;ReadPosRankSum=1.715;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4526,466,0 chrX 377905 . A G 3383.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.2283;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=23.01;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3383,366,0 chrX 378005 . A G 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.4441;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;MQRankSum=0.614;QD=22.83;ReadPosRankSum=0.988;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3607,390,0 chrX 378111 . G A 2008 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=22.56;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2041,210,0 chrX 378131 . C T 1679 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=18.87;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1712,186,0 chrX 378171 . A G 1216 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=33.17;MQ0=0;QD=14.65;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1249,135,0 chrX 378185 . T G 1151 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=4.771;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.43;MQ0=0;MQRankSum=0.100;QD=13.23;ReadPosRankSum=1.692;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1184,126,0 chrX 378189 . G C 1130 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.43;MQ0=0;QD=12.84;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1163,132,0 chrX 378194 . A G 1152 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;MQRankSum=0.362;QD=12.66;ReadPosRankSum=1.694;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1185,126,0 chrX 378204 . T G 1191 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=4.508;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;MQRankSum=1.263;QD=12.41;ReadPosRankSum=1.696;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1224,132,0 chrX 378208 . A G 1258 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=0;MQRankSum=-0.497;QD=12.46;ReadPosRankSum=1.698;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1291,138,0 chrX 378211 . A T 1202 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.22;MQ0=0;QD=12.14;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1235,132,0 chrX 378217 . T A 1237 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=4.245;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=34.11;MQ0=0;MQRankSum=-1.423;QD=12.25;ReadPosRankSum=1.698;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1270,129,0 chrX 378252 . T A 1348 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=14.49;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1381,147,0 chrX 378266 . T A 1576 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.7175;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;QD=16.59;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1609,171,0 chrX 378337 . G A 1514 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=62.1051;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=22.26;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1547,162,0 chrX 378557 . T C 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.220;DP=161;Dels=0.00;FS=2.375;HaplotypeScore=7.4516;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.733;QD=21.75;ReadPosRankSum=3.405;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:4,157:161:99:3502,372,0 chrX 378567 . T A 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.9789;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-1.309;QD=21.98;ReadPosRankSum=1.652;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3780,394,0 chrX 378608 . G A 4478.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.4102;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=22.73;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4478,466,0 chrX 378869 . C T 4424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.328;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.185;QD=21.37;ReadPosRankSum=-0.622;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4424,471,0 chrX 378873 . G A 4254.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.27;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4254,442,0 chrX 379268 . T C 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.313;DP=158;Dels=0.00;FS=8.854;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.297;QD=23.07;ReadPosRankSum=3.358;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:4,152:158:99:3645,381,0 chrX 379586 . T C 4087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=188;Dels=0.00;FS=4.221;HaplotypeScore=10.8053;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.264;QD=21.74;ReadPosRankSum=1.676;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,184:188:99:4087,441,0 chrX 380280 . T C 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9065;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.926;QD=26.17;ReadPosRankSum=1.678;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3376,357,0 chrX 380369 . G A 2514 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=25.65;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2547,255,0 chrX 380394 . C T 2593 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=20.58;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2626,270,0 chrX 380408 . A G 2552 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=18.23;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2585,285,0 chrX 380423 . T C 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=0.430;QD=18.31;ReadPosRankSum=2.381;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3296,357,0 chrX 380706 . T C 9189.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.188;DP=441;Dels=0.00;FS=15.202;HaplotypeScore=16.3855;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.495;QD=20.84;ReadPosRankSum=4.178;SB=-5.729e+03 GT:AD:DP:GQ:PL 1/1:6,432:441:99:9189,985,0 chrX 380729 . A G 7919.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=393;Dels=0.00;FS=6.053;HaplotypeScore=18.2768;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.054;QD=20.15;ReadPosRankSum=2.951;SB=-4.987e+03 GT:AD:DP:GQ:PL 1/1:3,388:393:99:7919,885,0 chrX 380852 . A G 7916.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.962;DP=406;Dels=0.00;FS=10.689;HaplotypeScore=26.5216;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.467;QD=19.50;ReadPosRankSum=4.180;SB=-4.242e+03 GT:AD:DP:GQ:PL 1/1:6,399:406:99:7916,873,0 chrX 380913 . A T 6952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=320;Dels=0.00;FS=2.567;HaplotypeScore=16.9440;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.531;QD=21.73;ReadPosRankSum=2.959;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:3,317:320:99:6952,712,0 chrX 380992 . T C 5528.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=15.9443;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.96;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,274:277:99:5528,598,0 chrX 381023 . A G 4636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.426;DP=249;Dels=0.00;FS=5.080;HaplotypeScore=11.7604;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.563;QD=18.62;ReadPosRankSum=3.419;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:4,245:249:99:4636,510,0 chrX 381896 . T C 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=188;Dels=0.00;FS=2.608;HaplotypeScore=10.2999;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.359;QD=23.47;ReadPosRankSum=2.397;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4412,474,0 chrX 382079 . T C 4765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=232;Dels=0.00;FS=9.432;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.091;QD=20.54;ReadPosRankSum=2.918;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:3,229:232:99:4765,531,0 chrX 382565 . T C 4724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=208;Dels=0.00;FS=2.921;HaplotypeScore=17.3223;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.018;QD=22.71;ReadPosRankSum=2.402;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:2,205:208:99:4724,519,0 chrX 382599 . T C 4511.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.78;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4511,472,0 chrX 383417 . T C 1982 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.86;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2015,231,0 chrX 383911 . C G 3506.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.22;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3506,372,0 chrX 384523 . A C 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=167;Dels=0.00;FS=3.037;HaplotypeScore=17.6336;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.111;QD=23.25;ReadPosRankSum=2.376;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3883,420,0 chrX 384853 . C T 4185.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=6.1854;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.19;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4185,447,0 chrX 384940 . G T 5021.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.6241;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5021,523,0 chrX 384973 . C T 4751.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.6884;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.20;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4751,499,0 chrX 385072 . A G 4645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.377;DP=190;Dels=0.00;FS=5.230;HaplotypeScore=14.2814;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.675;QD=24.45;ReadPosRankSum=3.395;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:4,186:190:99:4645,487,0 chrX 385186 . T A 4863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=17.6594;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.662;QD=25.33;ReadPosRankSum=1.714;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4863,508,0 chrX 385354 . T C 4445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=177;Dels=0.00;FS=7.443;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.384;QD=25.11;ReadPosRankSum=2.352;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:4445,472,0 chrX 385636 . G A 4552.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.0629;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.21;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4552,469,0 chrX 385903 . A T 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=3.138;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=1.079;QD=23.43;ReadPosRankSum=1.707;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3266,337,0 chrX 385921 . A T 3202 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.24;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3235,331,0 chrX 385990 . G T 2387 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=18.22;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2420,252,0 chrX 385991 . C T 2472 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=18.31;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2505,261,0 chrX 386167 . A G 1530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=1.070;QD=22.50;ReadPosRankSum=1.681;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1563,168,0 chrX 386286 . A C 686 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=18.54;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:78:719,78,0 chrX 386296 . A T 701 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=18.95;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:75:734,75,0 chrX 386494 . G T 1108 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1141,120,0 chrX 387115 . C T 3584.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.9104;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.05;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3584,370,0 chrX 387413 . A G 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=111;Dels=0.00;FS=3.047;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.543;QD=23.41;ReadPosRankSum=2.405;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2632,282,0 chrX 387637 . G A 3692.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.61;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3692,382,0 chrX 387767 . C T 5480.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.61;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5480,574,0 chrX 387842 . T C 4434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=185;Dels=0.00;FS=6.092;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.463;QD=23.97;ReadPosRankSum=2.396;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4434,471,0 chrX 388199 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.49;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2335,240,0 chrX 388253 . T C 1462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=85;Dels=0.00;FS=4.472;HaplotypeScore=64.3457;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.784;QD=17.20;ReadPosRankSum=1.691;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1495,162,0 chrX 388388 . A G 2967 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.58;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3000,312,0 chrX 388820 . A C 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.034;QD=19.23;ReadPosRankSum=1.709;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2937,330,0 chrX 388825 . T C 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=160;Dels=0.00;FS=8.850;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=-0.963;QD=21.33;ReadPosRankSum=2.309;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,155:160:99:3413,360,0 chrX 388844 . C T 3083 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.7171;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.51;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3116,336,0 chrX 389003 . A C 3075 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.1677;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.65;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3108,339,0 chrX 389114 . A G 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=148;Dels=0.00;FS=2.960;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=2.134;QD=22.99;ReadPosRankSum=2.416;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3402,366,0 chrX 389243 . G A 3380.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.80;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3380,349,0 chrX 389413 . C T 3698.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.86;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3698,379,0 chrX 389732 . T C 3062 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.0220;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.02;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3095,336,0 chrX 389780 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.57;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2932,303,0 chrX 390043 . A G 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.913;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.4849;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-1.134;QD=14.81;ReadPosRankSum=2.155;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:2,140:144:99:2166,275,0 chrX 390044 . G A 2135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.441;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=10.6611;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-0.472;QD=14.62;ReadPosRankSum=1.393;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:2168,275,0 chrX 390601 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=146;Dels=0.00;FS=9.112;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.247;QD=23.64;ReadPosRankSum=3.326;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:4,141:146:99:3452,366,0 chrX 390777 . T C 3718.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3718,399,0 chrX 390902 . G C 3089 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.3307;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.11;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,119:123:99:3122,330,0 chrX 391247 . A G 3049 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=19.67;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3082,327,0 chrX 391307 . A G 3350.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=19.25;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3350,360,0 chrX 391657 . T C 6742.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.03;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,304:306:99:6742,733,0 chrX 391693 . T C 7689.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=378;Dels=0.00;FS=6.932;HaplotypeScore=22.9112;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.252;QD=20.34;ReadPosRankSum=1.704;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,374:378:99:7689,835,0 chrX 391817 . A G 7030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=303;Dels=0.00;FS=4.250;HaplotypeScore=22.8209;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.163;QD=23.20;ReadPosRankSum=1.720;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:1,297:303:99:7030,760,0 chrX 392321 . C T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.40;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4045,415,0 chrX 392346 . G A 6055.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=11.0854;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.61;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:6055,640,0 chrX 392787 . A G 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=132;Dels=0.00;FS=2.570;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.970;QD=21.41;ReadPosRankSum=2.947;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2859,306,0 chrX 393288 . T C 4303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.525;QD=21.62;ReadPosRankSum=1.697;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4303,471,0 chrX 393423 . T C 3119 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.57;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3152,357,0 chrX 393501 . C T 2120 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.43;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2153,234,0 chrX 393564 . G C 1947 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.2082;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.87;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1980,213,0 chrX 393918 . T C 3284.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.664;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.3470;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.055;QD=25.46;ReadPosRankSum=2.946;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:3284,348,0 chrX 394236 . A G 4095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=193;Dels=0.00;FS=5.225;HaplotypeScore=13.2525;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.250;QD=21.22;ReadPosRankSum=3.414;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:4,188:193:99:4095,438,0 chrX 394341 . T C 5367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=226;Dels=0.00;FS=2.864;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.356;QD=23.75;ReadPosRankSum=2.340;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:5367,579,0 chrX 395805 . G A 1253 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1286,132,0 chrX 396819 . A T 2069 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.25;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2102,216,0 chrX 397072 . G A 2695 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.43;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2728,294,0 chrX 397093 . T C 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=124;Dels=0.00;FS=5.853;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.504;QD=22.08;ReadPosRankSum=2.846;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:2771,294,0 chrX 397702 . T C 4525.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.07;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4525,495,0 chrX 398093 . C T 2864 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2897,303,0 chrX 398191 . T C 3593.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3593,378,0 chrX 398425 . A C 2706 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.4189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2739,297,0 chrX 398569 . T A 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=149;Dels=0.00;FS=2.853;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.569;QD=24.78;ReadPosRankSum=2.400;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3692,393,0 chrX 398997 . A G 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=120;Dels=0.00;FS=3.010;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.362;QD=23.83;ReadPosRankSum=2.388;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2893,309,0 chrX 399363 . C T 3073 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2835;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.49;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3106,330,0 chrX 399390 . C T 3627.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.40;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3627,376,0 chrX 399800 . T C 8725.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.977;DP=380;Dels=0.00;FS=11.997;HaplotypeScore=25.2465;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=0.861;QD=22.96;ReadPosRankSum=5.027;SB=-3.364e+03 GT:AD:DP:GQ:PL 1/1:9,371:380:99:8725,943,0 chrX 399979 . A C 9695.01 filter AC=2;AF=1.00;AN=2;DP=435;Dels=0.00;FS=0.000;HaplotypeScore=27.5139;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=22.29;SB=-5.332e+03 GT:AD:DP:GQ:PL 1/1:0,432:435:99:9695,1063,0 chrX 400122 . C T 6976.01 filter AC=2;AF=1.00;AN=2;DP=454;Dels=0.00;FS=0.000;HaplotypeScore=22.5736;MLEAC=2;MLEAF=1.00;MQ=42.88;MQ0=0;QD=15.37;SB=-4.477e+03 GT:AD:DP:GQ:PL 1/1:0,446:454:99:6976,754,0 chrX 400151 . T C 4634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=359;Dels=0.00;FS=4.476;HaplotypeScore=18.4019;MLEAC=2;MLEAF=1.00;MQ=34.23;MQ0=0;MQRankSum=0.399;QD=12.91;ReadPosRankSum=1.586;SB=-3.434e+03 GT:AD:DP:GQ:PL 1/1:2,355:359:99:4634,493,0 chrX 400159 . A G 3459.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.168;DP=325;Dels=0.00;FS=10.169;HaplotypeScore=19.7244;MLEAC=2;MLEAF=1.00;MQ=31.95;MQ0=0;MQRankSum=-3.947;QD=10.64;ReadPosRankSum=4.194;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:6,317:325:99:3459,387,0 chrX 400168 . A G 2258 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=248;Dels=0.00;FS=2.569;HaplotypeScore=10.9981;MLEAC=2;MLEAF=1.00;MQ=29.42;MQ0=0;MQRankSum=-2.980;QD=9.10;ReadPosRankSum=2.972;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:3,245:248:99:2291,255,0 chrX 400169 . T C 1807.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.389;DP=245;Dels=0.00;FS=15.987;HaplotypeScore=106.6196;MLEAC=1;MLEAF=0.500;MQ=28.84;MQ0=0;MQRankSum=-0.034;QD=7.38;ReadPosRankSum=-3.848;SB=-1.220e+03 GT:AD:DP:GQ:PL 0/1:93,152:245:99:1837,0,111 chrX 400172 . A G 2447 SnpCluster AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=106.0356;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=9.99;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:2480,261,0 chrX 400179 . T A 103.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.964;DP=239;Dels=0.00;FS=19.577;HaplotypeScore=115.8875;MLEAC=1;MLEAF=0.500;MQ=28.84;MQ0=0;MQRankSum=0.616;QD=0.43;ReadPosRankSum=3.916;SB=-3.420e+02 GT:AD:DP:GQ:PL 0/1:147,92:239:99:133,0,1591 chrX 400195 . G A 213.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.568;DP=104;Dels=0.00;FS=10.820;HaplotypeScore=31.5008;MLEAC=1;MLEAF=0.500;MQ=28.82;MQ0=0;MQRankSum=-1.089;QD=2.05;ReadPosRankSum=7.258;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:73,31:104:99:243,0,653 chrX 400197 . T A 223.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.796;DP=98;Dels=0.00;FS=4.615;HaplotypeScore=29.5141;MLEAC=1;MLEAF=0.500;MQ=28.81;MQ0=0;MQRankSum=0.110;QD=2.28;ReadPosRankSum=5.145;SB=-1.280e+02 GT:AD:DP:GQ:PL 0/1:61,37:98:99:253,0,605 chrX 400199 . A G 489.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;DP=90;Dels=0.00;FS=2.165;HaplotypeScore=22.2416;MLEAC=1;MLEAF=0.500;MQ=28.79;MQ0=0;MQRankSum=-0.529;QD=5.43;ReadPosRankSum=-3.803;SB=-2.760e+02 GT:AD:DP:GQ:PL 0/1:39,51:90:99:519,0,267 chrX 400200 . A G 219.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;DP=82;Dels=0.00;FS=5.707;HaplotypeScore=14.7316;MLEAC=1;MLEAF=0.500;MQ=28.77;MQ0=0;MQRankSum=-0.019;QD=2.67;ReadPosRankSum=6.302;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:51,31:82:99:249,0,542 chrX 400202 . A G 600 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.1375;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.024;QD=11.54;ReadPosRankSum=2.355;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:69:633,69,0 chrX 400204 . A G 565 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.379;QD=11.30;ReadPosRankSum=2.350;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:2,47:50:66:598,66,0 chrX 400205 . C T 163.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.679;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.7714;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-1.411;QD=3.40;ReadPosRankSum=-3.466;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:32,16:48:99:193,0,328 chrX 400209 . A T 226.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.7714;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.948;QD=5.38;ReadPosRankSum=4.382;SB=-6.201e+01 GT:AD:DP:GQ:PL 0/1:17,25:42:99:256,0,183 chrX 400213 . A G 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.731;QD=9.79;ReadPosRankSum=0.731;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:1,4:5:9:81,9,0 chrX 400215 . T A 16.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.727;QD=4.03;ReadPosRankSum=-0.727;SB=0.015 GT:AD:DP:GQ:PL 0/1:1,3:4:20:46,0,20 chrX 400231 . A G 125.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.90;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:158,18,0 chrX 400235 . A G 182.03 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.58;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:24:215,24,0 chrX 400267 . A G 857 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=6.54;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:890,99,0 chrX 400268 . C T 910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.283;DP=131;Dels=0.00;FS=5.262;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;MQRankSum=1.045;QD=6.95;ReadPosRankSum=-1.071;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:943,99,0 chrX 400282 . G A 1208 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=177;Dels=0.00;FS=5.490;HaplotypeScore=4.3481;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;MQRankSum=-0.401;QD=6.82;ReadPosRankSum=0.147;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:1241,129,0 chrX 400285 . A G 1246 SnpCluster AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.2422;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=6.70;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:1279,141,0 chrX 400289 . A G 1362 SnpCluster AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.4535;MLEAC=2;MLEAF=1.00;MQ=30.03;MQ0=0;QD=6.55;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:1395,150,0 chrX 400294 . G A 1743 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.031;DP=226;Dels=0.00;FS=5.833;HaplotypeScore=6.6281;MLEAC=2;MLEAF=1.00;MQ=32.61;MQ0=0;MQRankSum=0.215;QD=7.71;ReadPosRankSum=0.843;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:1776,192,0 chrX 400303 . A G 1874 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=6.7548;MLEAC=2;MLEAF=1.00;MQ=34.04;MQ0=0;QD=7.65;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:1907,207,0 chrX 400308 . A T 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.835;DP=255;Dels=0.00;FS=5.740;HaplotypeScore=4.8656;MLEAC=2;MLEAF=1.00;MQ=34.64;MQ0=0;MQRankSum=1.352;QD=8.26;ReadPosRankSum=1.623;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:2139,222,0 chrX 400335 . G A 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=9.4347;MLEAC=2;MLEAF=1.00;MQ=43.01;MQ0=0;MQRankSum=-1.705;QD=12.12;ReadPosRankSum=1.013;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:1,259:261:99:3197,330,0 chrX 400388 . C G 4037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.1141;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=-0.996;QD=17.78;ReadPosRankSum=1.671;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4037,435,0 chrX 400497 . G A 3088 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.9562;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=20.32;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3121,339,0 chrX 400808 . T C 5494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.315;DP=247;Dels=0.00;FS=16.781;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=0.279;QD=22.24;ReadPosRankSum=4.348;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:7,238:247:99:5494,591,0 chrX 401350 . T C 5976.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=14.2250;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.30;SB=-3.049e+03 GT:AD:DP:GQ:PL 1/1:0,266:268:99:5976,649,0 chrX 401648 . A G 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.171;DP=159;Dels=0.00;FS=2.913;HaplotypeScore=12.2054;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.770;QD=22.43;ReadPosRankSum=2.372;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3567,372,0 chrX 402396 . T C 4199.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0890;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.14;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4199,439,0 chrX 402778 . G C 3221.92 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.41;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,127:132:99:3255,351,0 chrX 402983 . T C 5264.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.69;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5264,591,0 chrX 403403 . T C 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.396;DP=128;Dels=0.00;FS=4.226;HaplotypeScore=12.2630;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.678;QD=19.65;ReadPosRankSum=1.350;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2548,273,0 chrX 403967 . G A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.15;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3597,384,0 chrX 404560 . A T 4050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.662;QD=22.75;ReadPosRankSum=1.674;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4050,418,0 chrX 404625 . C G 3743.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.41;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3743,402,0 chrX 404816 . T C 4019.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.21;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4019,429,0 chrX 405244 . A G 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-1.481;QD=19.20;ReadPosRankSum=1.682;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2683,291,0 chrX 405265 . A T 2381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9527;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.785;QD=18.46;ReadPosRankSum=1.678;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2414,264,0 chrX 405306 . G A 2116 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.5538;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.59;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2149,222,0 chrX 405389 . T C 2124 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2157,234,0 chrX 405572 . G C 2893 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2926,315,0 chrX 405884 . C T 2668 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2701,285,0 chrX 405995 . A G 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.787;QD=24.85;ReadPosRankSum=1.710;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3877,411,0 chrX 406673 . A G 5341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=223;Dels=0.00;FS=6.058;HaplotypeScore=13.7078;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.878;QD=23.95;ReadPosRankSum=2.960;SB=-3.017e+03 GT:AD:DP:GQ:PL 1/1:3,220:223:99:5341,562,0 chrX 406781 . G A 3852.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.0633;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.53;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3852,411,0 chrX 406848 . T C 4536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=190;Dels=0.00;FS=11.157;HaplotypeScore=20.5955;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.091;QD=23.87;ReadPosRankSum=2.941;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:3,184:190:99:4536,478,0 chrX 406945 . A C 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.219;QD=22.79;ReadPosRankSum=1.710;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3624,393,0 chrX 407030 . C T 2953 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.82;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2986,318,0 chrX 407535 . G A 5248.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=19.4264;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.98;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:5248,535,0 chrX 407617 . C T 6610.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=17.0039;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.66;SB=-3.692e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:6610,679,0 chrX 408145 . T C 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.223;DP=177;Dels=0.00;FS=14.426;HaplotypeScore=10.3071;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;MQRankSum=0.311;QD=21.49;ReadPosRankSum=3.252;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:4,173:177:99:3804,423,0 chrX 408211 . C T 4509.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.5763;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.36;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4509,475,0 chrX 409193 . T C 1633 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.1330;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.77;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1666,174,0 chrX 409312 . C T 1369 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=25.83;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1402,147,0 chrX 409479 . G A 2678 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.26;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2711,282,0 chrX 409825 . T C 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=4.007;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.866;QD=22.29;ReadPosRankSum=1.710;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3477,366,0 chrX 409993 . T C 4102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-1.611;QD=23.85;ReadPosRankSum=1.671;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4102,444,0 chrX 410060 . A G 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=4.037;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-0.912;QD=22.59;ReadPosRankSum=1.709;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3433,381,0 chrX 410082 . A G 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=3.670;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;MQRankSum=-0.466;QD=19.14;ReadPosRankSum=1.710;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:3076,336,0 chrX 410110 . A G 2913 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=0;QD=18.55;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2946,315,0 chrX 410131 . A C 2934 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.51;MQ0=0;QD=17.78;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2967,318,0 chrX 410140 . G T 2721 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.44;MQ0=0;QD=16.10;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2754,300,0 chrX 410143 . G C 2584 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=43.27;MQ0=0;QD=15.38;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2617,297,0 chrX 410189 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7574;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=20.51;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3528,369,0 chrX 410366 . T C 2855 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=18.78;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:2888,321,0 chrX 410379 . A G 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.589;DP=150;Dels=0.00;FS=7.730;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;MQRankSum=-1.291;QD=18.17;ReadPosRankSum=3.737;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:5,144:150:99:2759,300,0 chrX 410405 . C T 3060 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=19.49;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3093,324,0 chrX 410563 . C T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=25.13;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3342,348,0 chrX 410951 . T C 3152 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.60;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3185,336,0 chrX 410980 . T C 2656 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.27;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2689,291,0 chrX 410992 . A G 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.475;QD=20.54;ReadPosRankSum=1.704;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2580,276,0 chrX 412350 . C T 4193.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4193,436,0 chrX 413489 . T C 4945.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=16.2633;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.66;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4945,537,0 chrX 413692 . C G 3790.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.29;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3790,397,0 chrX 414104 . C T 1806 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1839,192,0 chrX 414241 . T C 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.770;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.795;QD=23.02;ReadPosRankSum=2.919;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:3,159:162:99:3730,411,0 chrX 415069 . A C 1710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=77.2744;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=0;MQRankSum=1.255;QD=15.69;ReadPosRankSum=1.669;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1743,189,0 chrX 415079 . A G 1490 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.69;MQ0=0;QD=14.19;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1523,168,0 chrX 415097 . C T 1993 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=17.18;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2026,222,0 chrX 415231 . A G 3865.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.7698;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=24.46;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3865,432,0 chrX 415474 . A G 4577.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.9607;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.61;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4577,484,0 chrX 415501 . G A 4059.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=24.31;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4059,415,0 chrX 415541 . C T 4476.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=25.01;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4476,466,0 chrX 416075 . G T 3078 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=24.24;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3111,327,0 chrX 416209 . G C 2981 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=19.61;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3014,324,0 chrX 416379 . A G 3799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=3.037;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.669;QD=23.02;ReadPosRankSum=1.669;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3799,408,0 chrX 416411 . T C 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=168;Dels=0.00;FS=3.036;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.358;QD=23.61;ReadPosRankSum=2.362;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3967,415,0 chrX 416446 . A G 3668.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=24.13;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3668,399,0 chrX 416506 . T G 3273.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=23.89;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3273,354,0 chrX 416657 . T C 2846 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.32;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2879,300,0 chrX 416872 . G A 415 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.86;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:45:448,45,0 chrX 416908 . C T 440 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.16;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:48:473,48,0 chrX 417033 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=26.84;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1992,201,0 chrX 417313 . A T 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.721;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.198;QD=19.88;ReadPosRankSum=2.901;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2260,252,0 chrX 417327 . C T 2324 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.21;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2357,240,0 chrX 417351 . A C 1912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-1.694;QD=20.78;ReadPosRankSum=1.656;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1945,210,0 chrX 417428 . A T 1876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.224;QD=25.01;ReadPosRankSum=1.686;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1909,192,0 chrX 417470 . C T 1704 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1737,177,0 chrX 417543 . G T 1607 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1357;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=26.34;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1640,165,0 chrX 417732 . G A 3193 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.2904;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.37;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3226,336,0 chrX 417803 . C T 4912.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.9200;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.84;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4912,511,0 chrX 417877 . T C 4273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=180;Dels=0.00;FS=2.888;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.322;QD=23.74;ReadPosRankSum=2.367;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:4273,456,0 chrX 418404 . C T 4015.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.68;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4015,432,0 chrX 418708 . T C 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=149;Dels=0.00;FS=7.379;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.751;QD=22.54;ReadPosRankSum=2.285;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3358,354,0 chrX 419079 . A G 4582.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.74;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4582,481,0 chrX 419227 . T A 4149.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=18.4431;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.12;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4149,430,0 chrX 419397 . G A 3080 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3113,324,0 chrX 419759 . C T 1411 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=18.09;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1444,153,0 chrX 419761 . G C 1397 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=17.91;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1430,153,0 chrX 419940 . A T 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=136;Dels=0.00;FS=4.869;HaplotypeScore=6.5136;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.654;QD=23.15;ReadPosRankSum=1.604;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3181,333,0 chrX 420497 . G C 4003.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.41;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4003,444,0 chrX 420791 . A T 5607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=13.8826;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.971;QD=21.24;ReadPosRankSum=1.693;SB=-3.100e+03 GT:AD:DP:GQ:PL 1/1:1,263:264:99:5607,604,0 chrX 421100 . G T 4573.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.99;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4573,466,0 chrX 421216 . T C 4975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.8713;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.594;QD=23.47;ReadPosRankSum=1.716;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:4975,534,0 chrX 421583 . T C 4138.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.25;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4138,438,0 chrX 421902 . T C 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.315;QD=25.34;ReadPosRankSum=1.706;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3370,354,0 chrX 421930 . G A 3446.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=25.34;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3446,355,0 chrX 421977 . C A 2931 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.55;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2964,315,0 chrX 421994 . G A 2990 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.51;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3023,327,0 chrX 422102 . A G 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=143;Dels=0.00;FS=6.113;HaplotypeScore=4.3449;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.542;QD=24.13;ReadPosRankSum=2.923;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:3451,366,0 chrX 422126 . G A 3765.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=25.10;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3765,385,0 chrX 422219 . T C 2858 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.49;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2891,315,0 chrX 422419 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5344;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.29;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2618,285,0 chrX 422529 . T C 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.507;QD=23.76;ReadPosRankSum=1.704;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2955,324,0 chrX 422597 . G A 2469 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.51;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2502,264,0 chrX 422683 . A G 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.119;QD=23.63;ReadPosRankSum=1.679;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3105,330,0 chrX 422897 . T G 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=0.467;QD=20.21;ReadPosRankSum=1.347;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2580,276,0 chrX 424353 . A G 2951 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.6639;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.80;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2984,312,0 chrX 424406 . A T 2833 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5752;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.29;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2866,300,0 chrX 424555 . T G 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=175;Dels=0.00;FS=7.896;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.462;QD=21.61;ReadPosRankSum=2.379;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:2,171:175:99:3781,408,0 chrX 424721 . G T 2206 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.06;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2239,231,0 chrX 424833 . A G 1965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.59;MQ0=0;MQRankSum=1.487;QD=22.59;ReadPosRankSum=2.393;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1998,216,0 chrX 424928 . G T 237.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.511;DP=61;Dels=0.00;FS=13.100;HaplotypeScore=2.2566;MLEAC=1;MLEAF=0.500;MQ=50.26;MQ0=1;MQRankSum=-1.902;QD=3.89;ReadPosRankSum=-0.461;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,27:61:99:267,0,226 chrX 424930 . A T 184.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.345;DP=66;Dels=0.00;FS=29.192;HaplotypeScore=7.0249;MLEAC=1;MLEAF=0.500;MQ=50.29;MQ0=1;MQRankSum=-1.026;QD=2.79;ReadPosRankSum=-3.310;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,24:66:99:214,0,431 chrX 425083 . A T 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=146;Dels=0.00;FS=7.020;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.736;QD=23.47;ReadPosRankSum=1.590;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3426,360,0 chrX 425108 . C G 3288.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=20.81;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3288,342,0 chrX 425129 . C G 3568.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.04;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3568,387,0 chrX 425504 . T G 5441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.8334;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.359;QD=24.18;ReadPosRankSum=1.701;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:1,222:225:99:5441,586,0 chrX 425929 . C T 5850.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.11;SB=-2.948e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5850,607,0 chrX 426287 . C A 7089.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=30.6373;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.11;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,291:294:99:7089,736,0 chrX 426616 . G A 4524.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=22.51;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4524,463,0 chrX 426869 . T C 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=179;Dels=0.00;FS=6.074;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;MQRankSum=-1.358;QD=22.51;ReadPosRankSum=2.915;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:3,174:179:99:4030,438,0 chrX 427445 . G A 2572 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.04;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2605,267,0 chrX 427737 . A G 3605.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.03;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3605,384,0 chrX 428015 . C T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.74;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3809,391,0 chrX 428088 . G A 3171 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3204,331,0 chrX 428258 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.1574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3324,357,0 chrX 428552 . T C 2992 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.7645;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.78;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3025,333,0 chrX 429055 . A C 4238.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.53;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4238,453,0 chrX 429286 . T G 5004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=230;Dels=0.00;FS=13.381;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.703;QD=21.76;ReadPosRankSum=2.926;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:3,227:230:99:5004,540,0 chrX 429437 . A C 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.2734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.003;QD=23.98;ReadPosRankSum=1.712;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4148,447,0 chrX 429703 . A G 5632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=236;Dels=0.00;FS=3.180;HaplotypeScore=8.3212;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.511;QD=23.86;ReadPosRankSum=1.703;SB=-3.043e+03 GT:AD:DP:GQ:PL 1/1:1,234:236:99:5632,601,0 chrX 429926 . G A 4933.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.5851;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.22;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4933,511,0 chrX 430097 . T G 5125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=257;Dels=0.00;FS=5.973;HaplotypeScore=9.4905;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-1.124;QD=19.94;ReadPosRankSum=2.932;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:3,249:257:99:5125,564,0 chrX 430103 . G A 5213.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=20.28;SB=-3.104e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:5213,535,0 chrX 430343 . G T 7002.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=13.6447;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.37;SB=-3.836e+03 GT:AD:DP:GQ:PL 1/1:0,313:313:99:7002,748,0 chrX 430649 . G A 4754.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.4130;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.11;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4754,493,0 chrX 430727 . T C 3769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=3.813;HaplotypeScore=10.9777;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-1.398;QD=22.57;ReadPosRankSum=1.669;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3769,414,0 chrX 431354 . T C 2527 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.60;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2560,276,0 chrX 431392 . T C 2868 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.9818;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.06;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2901,315,0 chrX 431409 . A G 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-1.408;QD=22.20;ReadPosRankSum=1.707;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:3163,339,0 chrX 431531 . T C 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-1.227;QD=23.42;ReadPosRankSum=1.709;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3537,372,0 chrX 431547 . A G 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=4.709;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-0.112;QD=21.73;ReadPosRankSum=1.707;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3054,327,0 chrX 431554 . C G 2813 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=20.84;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2846,309,0 chrX 431570 . T C 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.351;QD=19.90;ReadPosRankSum=1.635;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2879,309,0 chrX 431673 . C A 3896.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.4865;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.50;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3896,403,0 chrX 431895 . T A 3978.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.02;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3978,412,0 chrX 432578 . A T 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=133;Dels=0.00;FS=4.304;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.604;QD=22.86;ReadPosRankSum=1.575;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3074,321,0 chrX 432799 . G A 4021.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.67;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4021,429,0 chrX 433328 . G A 1781 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1814,189,0 chrX 433368 . A G 2325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=6.021;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.264;QD=25.27;ReadPosRankSum=1.657;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2358,255,0 chrX 433686 . A G 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.654;QD=22.75;ReadPosRankSum=1.635;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4049,441,0 chrX 434034 . C T 3758.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.7221;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=24.56;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3758,394,0 chrX 434060 . C T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.4172;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.43;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3842,397,0 chrX 434435 . C T 4008.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.9447;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.00;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4008,438,0 chrX 434839 . C T 2891 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9922;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.50;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2924,303,0 chrX 434858 . A G 2367 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.12;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2400,255,0 chrX 434887 . G A 2101 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.40;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2134,222,0 chrX 435102 . T A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.9587;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.23;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3485,387,0 chrX 435254 . A T 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=183;Dels=0.00;FS=2.965;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.141;QD=22.89;ReadPosRankSum=2.423;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4189,433,0 chrX 435638 . T A 4411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=185;Dels=0.00;FS=11.016;HaplotypeScore=10.6529;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.723;QD=23.84;ReadPosRankSum=2.875;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:4411,457,0 chrX 435812 . A T 1719 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.0871;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.19;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1752,183,0 chrX 436041 . T C 3218.91 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.33;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3252,354,0 chrX 436111 . G A 2025 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=24.11;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2058,210,0 chrX 436312 . A G 1577 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.78;MQ0=0;QD=23.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1610,171,0 chrX 436332 . T A 1022 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=0;QD=22.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1055,108,0 chrX 436344 . G T 760 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=0;QD=22.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:81:793,81,0 chrX 436468 . G C 54.97 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=6.11;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:87,9,0 chrX 436479 . G A 50.97 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=6.37;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:83,9,0 chrX 436602 . T C 516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-1.362;QD=18.43;ReadPosRankSum=0.990;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:60:549,60,0 chrX 437758 . C G 3171 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.3107;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3204,360,0 chrX 438505 . G A 3743.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3743,396,0 chrX 438727 . A G 3886.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.7884;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.13;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3886,423,0 chrX 438766 . G A 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.467;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.564;QD=23.50;ReadPosRankSum=1.660;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3408,336,0 chrX 438853 . G T 2989 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.61;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3022,321,0 chrX 438861 . T C 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.4356;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.407;QD=19.88;ReadPosRankSum=1.686;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2995,324,0 chrX 439624 . C T 4937.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.97;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4937,517,0 chrX 439651 . G A 5261.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=24.02;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5261,544,0 chrX 440240 . A G 5524.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=7.7975;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.33;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5524,586,0 chrX 440601 . G T 3777.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.05;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3777,399,0 chrX 440709 . C G 3575.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.7245;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.54;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3575,375,0 chrX 440881 . A T 2487 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2520,264,0 chrX 440946 . C A 3328.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.29;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3328,351,0 chrX 441135 . T G 3101 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.04;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3134,336,0 chrX 441215 . C T 2799 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.13;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2832,309,0 chrX 443658 . T A 7267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=305;Dels=0.00;FS=3.020;HaplotypeScore=24.7276;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=0.981;QD=23.83;ReadPosRankSum=2.393;SB=-3.889e+03 GT:AD:DP:GQ:PL 1/1:2,302:305:99:7267,769,0 chrX 443746 . G A 7431.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=27.5193;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.97;SB=-3.985e+03 GT:AD:DP:GQ:PL 1/1:0,307:310:99:7431,769,0 chrX 445175 . C T 2292 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2325,240,0 chrX 446085 . G C 2863 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.56;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2896,303,0 chrX 446576 . G A 4905.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=16.5742;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,198:203:99:4905,505,0 chrX 448328 . C T 2896 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.57;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2929,306,0 chrX 448448 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.536;DP=144;Dels=0.00;FS=11.046;HaplotypeScore=14.4715;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.404;QD=22.42;ReadPosRankSum=3.743;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:5,139:144:99:3261,348,0 chrX 448916 . G T 736 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=14.15;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:81:769,81,0 chrX 448922 . T C 753 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=13.94;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:81:786,81,0 chrX 448925 . C A 729 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.53;MQ0=0;QD=13.02;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:84:762,84,0 chrX 448936 . T C 1047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;MQRankSum=-0.769;QD=15.17;ReadPosRankSum=2.307;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1080,114,0 chrX 449033 . G A 1302 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=26.04;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1335,138,0 chrX 449256 . T C 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.5126;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.411;QD=25.28;ReadPosRankSum=1.657;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3539,375,0 chrX 449403 . G A 5532.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.95;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5532,568,0 chrX 449418 . G A 4764.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.46;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4764,513,0 chrX 450069 . A G 4040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=171;Dels=0.00;FS=3.706;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.933;QD=23.63;ReadPosRankSum=1.712;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:4040,453,0 chrX 450386 . C A 5255.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=6.2935;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.21;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:0,257:260:99:5255,538,0 chrX 450387 . C T 5254.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=6.2935;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.90;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:5254,535,0 chrX 450521 . C T 6015.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=16.9029;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.96;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,285:287:99:6015,619,0 chrX 450644 . G A 4578.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.1805;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=24.48;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4578,481,0 chrX 450783 . G T 2778 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2811,291,0 chrX 450888 . A G 2846 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.41;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2879,309,0 chrX 451295 . T C 4369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=193;Dels=0.00;FS=3.078;HaplotypeScore=8.8863;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.601;QD=22.64;ReadPosRankSum=1.696;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4369,486,0 chrX 451382 . C T 4261.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.30;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:4261,445,0 chrX 451436 . T C 4011.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4011,432,0 chrX 451760 . T C 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=130;Dels=0.00;FS=6.903;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.977;QD=22.38;ReadPosRankSum=2.317;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2942,318,0 chrX 452144 . G A 2401 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2434,255,0 chrX 452205 . T C 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.233;QD=24.17;ReadPosRankSum=1.683;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3408,372,0 chrX 452260 . C G 4599.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.99;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4599,484,0 chrX 452579 . C T 4354.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.2510;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.41;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4354,459,0 chrX 452919 . T A 4925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=209;Dels=0.00;FS=3.031;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.307;QD=23.56;ReadPosRankSum=1.715;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4925,520,0 chrX 453005 . T C 5591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=244;Dels=0.00;FS=5.849;HaplotypeScore=22.9670;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.266;QD=22.91;ReadPosRankSum=2.954;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:3,239:244:99:5591,592,0 chrX 453323 . A G 4336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.6590;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.696;QD=22.47;ReadPosRankSum=1.714;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4336,460,0 chrX 453420 . G A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3776,396,0 chrX 454055 . G A 2263.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.809;DP=499;Dels=0.00;FS=239.655;HaplotypeScore=21.4186;MLEAC=1;MLEAF=0.500;MQ=37.10;MQ0=61;MQRankSum=-8.101;QD=4.54;ReadPosRankSum=2.611;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:328,167:499:99:2293,0,5527 chrX 454271 . T C 6910.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.897;DP=547;Dels=0.00;FS=331.400;HaplotypeScore=60.7751;MLEAC=1;MLEAF=0.500;MQ=38.56;MQ0=40;MQRankSum=7.704;QD=12.63;ReadPosRankSum=-2.640;SB=-2.481e+03 GT:AD:DP:GQ:PL 0/1:137,408:547:99:6910,0,565 chrX 454274 . T G 410.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.565;DP=562;Dels=0.00;FS=346.943;HaplotypeScore=45.9347;MLEAC=1;MLEAF=0.500;MQ=39.95;MQ0=38;MQRankSum=-8.295;QD=0.73;ReadPosRankSum=3.389;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:425,134:562:99:440,0,7741 chrX 455051 . C A 6462.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=13.4716;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.00;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:6462,676,0 chrX 455168 . T C 5588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=240;Dels=0.00;FS=3.817;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.719;QD=23.28;ReadPosRankSum=1.717;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:1,235:240:99:5588,615,0 chrX 455247 . T C 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=183;Dels=0.00;FS=8.805;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.237;QD=21.54;ReadPosRankSum=2.314;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:2,179:183:99:3942,441,0 chrX 455260 . C T 3921.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=22.80;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3921,406,0 chrX 455330 . T A 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=141;Dels=0.00;FS=3.858;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.683;QD=24.01;ReadPosRankSum=1.708;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3385,360,0 chrX 455390 . A T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.00;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3350,343,0 chrX 455563 . T A 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.483;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.289;QD=24.22;ReadPosRankSum=1.704;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3061,310,0 chrX 455859 . G A 2100 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.03;FS=0.000;HaplotypeScore=9.9429;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.43;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2133,222,0 chrX 456071 . A T 188.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.467;DP=23;Dels=0.04;FS=0.000;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=0.846;QD=8.18;ReadPosRankSum=3.454;SB=-2.703e+01 GT:AD:DP:GQ:PL 1/1:7,15:22:24:221,24,0 chrX 456089 . A G 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;DP=7;Dels=0.00;FS=8.451;HaplotypeScore=8.6986;MLEAC=1;MLEAF=0.500;MQ=35.14;MQ0=0;MQRankSum=0.198;QD=1.89;ReadPosRankSum=-0.922;SB=0.021 GT:AD:DP:GQ:PL 0/1:5,2:7:43:43,0,45 chrX 456092 . T A 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;DP=8;Dels=0.00;FS=9.700;HaplotypeScore=6.5877;MLEAC=1;MLEAF=0.500;MQ=39.12;MQ0=0;MQRankSum=-1.589;QD=2.14;ReadPosRankSum=-1.067;SB=0.015 GT:AD:DP:GQ:PL 0/1:6,2:8:47:47,0,47 chrX 456110 . C T 696 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.75;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:75:729,75,0 chrX 456781 . T C 6363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.058;QD=24.19;ReadPosRankSum=1.692;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:6363,682,0 chrX 456997 . T A 7463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=326;Dels=0.00;FS=9.071;HaplotypeScore=25.4370;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.197;QD=22.89;ReadPosRankSum=2.954;SB=-4.159e+03 GT:AD:DP:GQ:PL 1/1:3,323:326:99:7463,796,0 chrX 457744 . C T 1988 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.3883;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2021,207,0 chrX 458269 . C G 3857.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.81;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3857,408,0 chrX 458564 . T C 2250 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.27;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2283,243,0 chrX 458573 . C T 2268 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.06;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2301,240,0 chrX 458980 . T C 3909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.303;DP=183;Dels=0.02;FS=8.249;HaplotypeScore=7.0663;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.952;QD=21.36;ReadPosRankSum=3.411;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:4,175:179:99:3909,417,0 chrX 458995 . T C 4285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.5240;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.089;QD=21.97;ReadPosRankSum=1.714;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4285,454,0 chrX 459184 . T C 4654.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.5602;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=25.02;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4654,498,0 chrX 459216 . G C 4906.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.93;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4906,537,0 chrX 459433 . T G 3948.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.9739;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.78;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3948,426,0 chrX 459776 . T C 973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=41.5242;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;MQRankSum=-1.926;QD=14.74;ReadPosRankSum=2.375;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1006,111,0 chrX 459804 . T C 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.739;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=0.126;QD=17.08;ReadPosRankSum=2.937;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:3,109:112:99:1946,213,0 chrX 460047 . A G 6466.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=18.4520;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.61;SB=-3.352e+03 GT:AD:DP:GQ:PL 1/1:0,285:286:99:6466,679,0 chrX 460583 . A G 5200.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.30;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5200,547,0 chrX 460723 . G A 3090 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.23;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3123,330,0 chrX 460780 . T C 2789 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.86;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2822,312,0 chrX 460801 . G A 2591 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.24;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2624,282,0 chrX 460988 . A G 4264.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.9449;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.37;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4264,459,0 chrX 461497 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.69;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3348,363,0 chrX 461507 . G C 3765.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.27;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3765,399,0 chrX 461695 . A G 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=4.279;HaplotypeScore=17.6367;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-1.316;QD=16.82;ReadPosRankSum=1.594;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2573,285,0 chrX 462490 . G A 4990.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=24.46;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4990,517,0 chrX 462583 . T C 3672.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;QD=17.74;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3672,387,0 chrX 462586 . G C 3482.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;QD=16.66;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:3482,381,0 chrX 462605 . A G 2890 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=15.71;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:2923,318,0 chrX 462634 . A G 2913 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=15.41;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:2946,315,0 chrX 462687 . A G 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=3.218;HaplotypeScore=4.6114;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-0.260;QD=17.60;ReadPosRankSum=1.714;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3414,369,0 chrX 462689 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=3.245;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=0.383;QD=17.03;ReadPosRankSum=1.714;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,189:193:99:3287,363,0 chrX 462713 . G A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.1451;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=17.81;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:3758,391,0 chrX 462835 . G T 106.26 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=123.5986;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=0.80;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:15:139,15,0 chrX 462930 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.3693;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.89;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3300,345,0 chrX 463005 . C T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=23.06;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3390,349,0 chrX 463046 . G A 2835 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=23.05;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2868,306,0 chrX 463222 . C T 3940.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.1008;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.73;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3940,409,0 chrX 464252 . A G 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.828;QD=21.27;ReadPosRankSum=2.380;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3032,321,0 chrX 464394 . G A 640 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:69:673,69,0 chrX 464565 . C A 2311 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,90:94:99:2344,243,0 chrX 465021 . G A 6355.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=23.6797;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-3.503e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:6355,667,0 chrX 466454 . C T 4463.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=25.80;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4463,463,0 chrX 466456 . A T 4401.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=25.59;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4401,457,0 chrX 467010 . C G 2685 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.5130;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=15.34;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,174:175:99:2718,300,0 chrX 468087 . C T 6898.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=20.8541;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.07;SB=-3.636e+03 GT:AD:DP:GQ:PL 1/1:0,294:299:99:6898,724,0 chrX 468122 . A G 5665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=251;Dels=0.00;FS=2.822;HaplotypeScore=17.5104;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.582;QD=22.57;ReadPosRankSum=2.391;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:2,249:251:99:5665,601,0 chrX 468372 . C T 4631.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.81;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4631,498,0 chrX 468680 . G A 7066.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=30.1114;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.29;SB=-3.587e+03 GT:AD:DP:GQ:PL 1/1:0,317:317:99:7066,745,0 chrX 468905 . G C 7523.01 PASS AC=2;AF=1.00;AN=2;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=16.8192;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.01;SB=-4.117e+03 GT:AD:DP:GQ:PL 1/1:0,323:327:99:7523,811,0 chrX 469058 . C T 5798.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=28.2171;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.55;SB=-3.556e+03 GT:AD:DP:GQ:PL 1/1:0,266:269:99:5798,595,0 chrX 469113 . T C 4441.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=19.56;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4441,495,0 chrX 469115 . C T 4889.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.35;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4889,502,0 chrX 469349 . A T 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.254;DP=146;Dels=0.01;FS=3.620;HaplotypeScore=14.8371;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-0.561;QD=19.47;ReadPosRankSum=1.708;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2876,303,0 chrX 469453 . C T 4080.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.5761;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.79;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4080,421,0 chrX 469520 . T C 3871.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.46;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3871,414,0 chrX 469616 . T C 5485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=232;Dels=0.00;FS=3.028;HaplotypeScore=13.0075;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.518;QD=23.64;ReadPosRankSum=2.364;SB=-3.172e+03 GT:AD:DP:GQ:PL 1/1:2,228:232:99:5485,577,0 chrX 469702 . A G 3666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.693;DP=187;Dels=0.00;FS=1.638;HaplotypeScore=28.6332;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.226;QD=19.60;ReadPosRankSum=0.828;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:6,176:187:99:3666,389,0 chrX 470130 . G A 773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.682;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.7332;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;MQRankSum=-2.911;QD=12.47;ReadPosRankSum=0.719;SB=-2.700e+01 GT:AD:DP:GQ:PL 1/1:11,51:62:93:806,93,0 chrX 470136 . A G 501.42 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.090;DP=51;Dels=0.00;FS=6.410;HaplotypeScore=16.5922;MLEAC=1;MLEAF=0.500;MQ=40.65;MQ0=0;MQRankSum=-4.476;QD=9.83;ReadPosRankSum=3.360;SB=-2.442e+01 GT:AD:DP:GQ:PL 0/1:16,35:51:7:531,0,7 chrX 470142 . A G 383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.693;DP=44;Dels=0.00;FS=22.434;HaplotypeScore=49.5847;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;MQRankSum=-0.633;QD=8.70;ReadPosRankSum=-1.111;SB=-2.502e+01 GT:AD:DP:GQ:PL 1/1:6,38:44:3:413,3,0 chrX 470533 . G A 5613.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=20.0248;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.91;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5613,609,0 chrX 470610 . G C 6387.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=18.6470;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.40;SB=-3.508e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:6387,685,0 chrX 470653 . A C 5369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=9.0528;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.160;QD=21.56;ReadPosRankSum=1.718;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:5369,591,0 chrX 470664 . T C 5131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=240;Dels=0.00;FS=12.505;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-1.472;QD=21.38;ReadPosRankSum=2.970;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:3,233:240:99:5131,546,0 chrX 470777 . A G 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.3738;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.728;QD=22.04;ReadPosRankSum=1.699;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4562,498,0 chrX 471195 . T C 4720.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4720,504,0 chrX 471532 . C T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.08;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,166:170:99:3924,403,0 chrX 471814 . A G 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=195;Dels=0.00;FS=10.738;HaplotypeScore=9.6663;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.271;QD=23.86;ReadPosRankSum=2.298;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4653,525,0 chrX 471869 . C T 2711 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.3277;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2744,282,0 chrX 472011 . A G 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.2869;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.294;QD=21.03;ReadPosRankSum=1.710;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3344,357,0 chrX 472086 . T C 453 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.61;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:51:486,51,0 chrX 472163 . T C 2112 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=25.76;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2145,231,0 chrX 472296 . C T 2717 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.21;MQ0=0;QD=25.88;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2750,282,0 chrX 483972 . A T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=14;Dels=0.00;FS=30.004;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;MQRankSum=-2.899;QD=1.27;ReadPosRankSum=0.354;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:4,10:14:6:49,6,0 chrX 484073 . A T 5059.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=15.9665;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=23.75;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5059,540,0 chrX 484353 . T C 3171 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.02;FS=0.000;HaplotypeScore=14.5071;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=18.76;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3204,339,0 chrX 484372 . C T 3766.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.04;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3766,394,0 chrX 484566 . G C 4160.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.77;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4160,441,0 chrX 484576 . C T 4206.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.98;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4206,427,0 chrX 484754 . T A 4342.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.1100;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.39;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4342,448,0 chrX 484997 . A G 3829.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.39;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3829,402,0 chrX 485198 . G T 3930.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.5042;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.96;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,159:164:99:3930,400,0 chrX 485447 . G A 3995.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.3470;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.44;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3995,412,0 chrX 486009 . T C 5428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=219;Dels=0.00;FS=2.846;HaplotypeScore=15.4529;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.967;QD=24.79;ReadPosRankSum=2.359;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:2,215:219:99:5428,583,0 chrX 486193 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.01;FS=0.000;HaplotypeScore=21.2885;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.72;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3336,340,0 chrX 486292 . G A 2704 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.02;FS=0.000;HaplotypeScore=15.0392;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=20.64;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2737,276,0 chrX 486407 . A C 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=120;Dels=0.02;FS=3.485;HaplotypeScore=24.7837;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.508;QD=23.54;ReadPosRankSum=1.702;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2858,306,0 chrX 486432 . T G 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.300;DP=122;Dels=0.00;FS=9.221;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.252;QD=22.49;ReadPosRankSum=3.314;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:4,118:122:99:2777,297,0 chrX 486501 . T C 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.014;QD=24.33;ReadPosRankSum=1.675;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:3001,321,0 chrX 486724 . A G 5330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=219;Dels=0.00;FS=3.613;HaplotypeScore=8.2957;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.513;QD=24.34;ReadPosRankSum=1.684;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:1,215:219:99:5330,571,0 chrX 487279 . T C 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=123;Dels=0.00;FS=4.357;HaplotypeScore=8.9855;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.155;QD=21.83;ReadPosRankSum=1.646;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,119:123:99:2718,294,0 chrX 487339 . G A 2587 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=24.41;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2620,270,0 chrX 487716 . T G 5868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=228;Dels=0.00;FS=2.773;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.641;QD=25.74;ReadPosRankSum=2.353;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:2,226:228:99:5868,616,0 chrX 487992 . A G 3833.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.38;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3833,402,0 chrX 488113 . A C 4037.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.94;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4037,432,0 chrX 488152 . A G 3636.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.90;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3636,399,0 chrX 488230 . T C 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=4.188;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.498;QD=20.43;ReadPosRankSum=1.710;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3290,366,0 chrX 488782 . T C 3755.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.3471;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.76;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3755,396,0 chrX 489013 . C T 2313 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.13;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2346,243,0 chrX 489262 . A G 2235 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.58;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2268,246,0 chrX 489283 . A G 2491 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.9279;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.65;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2524,273,0 chrX 489341 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.50;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2924,303,0 chrX 489778 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.5893;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.814;QD=23.78;ReadPosRankSum=2.364;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3401,369,0 chrX 489978 . C G 3926.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.1095;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.44;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:3926,423,0 chrX 489987 . T A 4360.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.1287;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=19.73;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4360,462,0 chrX 490357 . A T 3062 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.51;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3095,333,0 chrX 490881 . G T 2399 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=13.6136;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.50;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2432,258,0 chrX 490924 . T C 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=143;Dels=0.00;FS=7.974;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.563;QD=21.41;ReadPosRankSum=2.346;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3094,330,0 chrX 491340 . C T 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.318;DP=134;Dels=0.00;FS=3.142;HaplotypeScore=9.6867;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.750;QD=22.41;ReadPosRankSum=0.465;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3036,300,0 chrX 491395 . C T 3113 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3146,330,0 chrX 491666 . G A 3714.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3714,385,0 chrX 491789 . C T 2798 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.8717;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.12;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2831,288,0 chrX 492295 . A T 782 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:87:815,87,0 chrX 492486 . A C 1931 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1964,210,0 chrX 492566 . G A 3006 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.14;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3039,310,0 chrX 492678 . T C 3395.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.3281;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.10;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3395,369,0 chrX 492839 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.3304;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.11;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3282,336,0 chrX 493119 . C T 5423.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.1248;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5423,568,0 chrX 493506 . T C 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=198;Dels=0.00;FS=7.434;HaplotypeScore=16.4379;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.418;QD=21.96;ReadPosRankSum=2.400;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:4348,468,0 chrX 493640 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.9268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4038,412,0 chrX 494265 . A G 3383.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.63;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3383,360,0 chrX 494352 . A G 3382.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.85;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3382,378,0 chrX 494568 . C T 4687.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.04;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4687,498,0 chrX 494603 . T C 4708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.237;DP=197;Dels=0.00;FS=8.839;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.269;QD=23.90;ReadPosRankSum=3.389;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:4,192:197:99:4708,502,0 chrX 494940 . A G 3130 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.6859;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.87;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3163,345,0 chrX 494949 . C A 3282.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.0573;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.74;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3282,340,0 chrX 494994 . C G 2988 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.19;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3021,330,0 chrX 495112 . T A 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=148;Dels=0.00;FS=3.573;HaplotypeScore=12.1441;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.287;QD=22.71;ReadPosRankSum=1.638;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3361,351,0 chrX 495458 . G A 4776.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4776,493,0 chrX 496029 . T C 6469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=265;Dels=0.00;FS=7.207;HaplotypeScore=19.4639;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.387;QD=24.41;ReadPosRankSum=2.412;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:2,261:265:99:6469,673,0 chrX 497086 . T C 494 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.48;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:57:527,57,0 chrX 497321 . T C 507 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.746;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.231;QD=12.67;ReadPosRankSum=3.845;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:6,34:40:60:540,60,0 chrX 497589 . A G 5940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.866;QD=23.57;ReadPosRankSum=1.718;SB=-2.986e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:5940,634,0 chrX 497615 . T C 6285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=266;Dels=0.00;FS=3.858;HaplotypeScore=9.1028;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.085;QD=23.63;ReadPosRankSum=1.719;SB=-3.034e+03 GT:AD:DP:GQ:PL 1/1:1,264:266:99:6285,667,0 chrX 497765 . C T 6241.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=17.7143;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.86;SB=-3.402e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:6241,658,0 chrX 497879 . A G 5324.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.98;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5324,562,0 chrX 497985 . G C 4830.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.5235;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.15;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,195:200:99:4830,528,0 chrX 498149 . A G 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.0382;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.245;QD=22.22;ReadPosRankSum=1.713;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3933,435,0 chrX 498362 . C T 4116.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.21;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4116,427,0 chrX 498452 . G T 4940.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.75;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4940,508,0 chrX 498551 . C T 3615.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=22.0306;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.39;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3615,370,0 chrX 498791 . G A 3725.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3725,385,0 chrX 499043 . G A 4193.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.26;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4193,436,0 chrX 499118 . G A 4554.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.35;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4554,466,0 chrX 499382 . G A 3827.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.62;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3827,400,0 chrX 500159 . G A 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.468;QD=26.16;ReadPosRankSum=0.493;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3584,375,0 chrX 500192 . A G 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.736;QD=25.92;ReadPosRankSum=1.637;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3785,399,0 chrX 500362 . G A 3717.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.62;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3717,376,0 chrX 500414 . A G 3667.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3667,382,0 chrX 500582 . T G 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=5.685;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.038;QD=23.19;ReadPosRankSum=1.682;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3233,342,0 chrX 500836 . A G 3058 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.27;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3091,348,0 chrX 501169 . T C 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.5382;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=1.382;QD=24.38;ReadPosRankSum=2.403;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2617,285,0 chrX 501283 . C T 2925 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.1057;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.12;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2958,297,0 chrX 501427 . C T 3075 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.02;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3108,321,0 chrX 501448 . A C 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.887;QD=21.51;ReadPosRankSum=1.704;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2679,294,0 chrX 501565 . G A 2397 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.7921;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.50;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2430,252,0 chrX 501706 . T A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.4334;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=26.03;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3262,342,0 chrX 501961 . C T 3780.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=25.03;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3780,388,0 chrX 502139 . G C 3434.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.68;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3434,363,0 chrX 502163 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.09;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3117,319,0 chrX 502192 . G A 3340.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=25.30;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3340,343,0 chrX 502260 . G T 3611.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=24.23;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3611,378,0 chrX 502294 . A G 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=142;Dels=0.00;FS=7.822;HaplotypeScore=9.8400;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.407;QD=23.84;ReadPosRankSum=2.380;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3385,369,0 chrX 502465 . C T 3404.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=23.16;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3404,352,0 chrX 502471 . C T 3365.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=22.89;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3365,351,0 chrX 502687 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.31;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3282,336,0 chrX 502696 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.6425;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=20.19;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3263,351,0 chrX 502798 . T C 3470.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3470,366,0 chrX 502945 . C T 4337.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.93;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4337,454,0 chrX 503332 . C G 4553.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=16.2989;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.89;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4553,487,0 chrX 503779 . A G 5013.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.6600;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.57;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:5013,532,0 chrX 503880 . G C 5179.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=18.5338;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.52;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,220:230:99:5179,556,0 chrX 503940 . C T 6307.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6307,670,0 chrX 504074 . G A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.97;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4242,439,0 chrX 504158 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.0860;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.307;QD=23.79;ReadPosRankSum=1.683;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3355,357,0 chrX 504644 . T C 6308.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=19.3524;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.83;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,288:289:99:6308,679,0 chrX 504695 . C T 5572.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.29;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5572,574,0 chrX 504709 . T C 5163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=241;Dels=0.00;FS=7.157;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.280;QD=21.42;ReadPosRankSum=2.368;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:2,239:241:99:5163,550,0 chrX 505150 . G A 4773.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.60;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4773,508,0 chrX 505156 . G A 4726.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=21.58;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4726,487,0 chrX 505297 . A T 4850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.575;QD=24.37;ReadPosRankSum=1.697;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4850,502,0 chrX 505396 . C T 5066.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.3843;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=24.59;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5066,549,0 chrX 505473 . G A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=14.6283;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.36;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3480,372,0 chrX 505510 . G A 3672.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=25.86;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3672,373,0 chrX 505537 . G A 3158 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=22.72;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3191,328,0 chrX 505548 . C T 3059 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.1906;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=21.70;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3092,321,0 chrX 505598 . A G 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.248;QD=19.39;ReadPosRankSum=1.635;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2806,309,0 chrX 505992 . G A 2763 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.83;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2796,288,0 chrX 506424 . G A 3590.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3590,370,0 chrX 506512 . G C 2674 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.7933;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.06;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2707,297,0 chrX 506526 . G C 2860 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.34;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2893,306,0 chrX 506574 . T C 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.172;QD=20.41;ReadPosRankSum=1.679;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2707,297,0 chrX 506707 . G A 3738.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=24.76;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3738,402,0 chrX 506903 . T C 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=3.126;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=-1.595;QD=22.09;ReadPosRankSum=1.709;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3358,360,0 chrX 506909 . G A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=21.77;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3288,345,0 chrX 506929 . C T 3225.28 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.91;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3258,345,0 chrX 507303 . G T 3089 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.40;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3122,324,0 chrX 507335 . A G 2567 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.57;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2600,282,0 chrX 507430 . C A 2734 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.17;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2767,282,0 chrX 507569 . C T 3159 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.07;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3192,330,0 chrX 507730 . A G 2957 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=24.24;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2990,315,0 chrX 507744 . T C 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=139;Dels=0.00;FS=2.764;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.709;QD=22.92;ReadPosRankSum=2.342;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:3219,345,0 chrX 508366 . C G 3624.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.53;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3624,387,0 chrX 508514 . T A 4899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=220;Dels=0.00;FS=5.899;HaplotypeScore=7.4695;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=0.274;QD=22.27;ReadPosRankSum=2.922;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:3,217:220:99:4899,499,0 chrX 508525 . G A 4920.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.01;FS=0.000;HaplotypeScore=10.0591;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=21.21;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4920,496,0 chrX 508529 . A C 4490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=229;Dels=0.00;FS=11.545;HaplotypeScore=8.7688;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=0.180;QD=19.61;ReadPosRankSum=2.934;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:3,226:229:99:4490,472,0 chrX 508627 . T C 4468.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.0699;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.08;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,207:212:99:4468,483,0 chrX 508682 . T C 5691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=233;Dels=0.00;FS=13.551;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.651;QD=24.42;ReadPosRankSum=2.892;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:3,230:233:99:5691,592,0 chrX 508859 . C T 3914.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.16;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3914,403,0 chrX 509110 . G A 4679.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.1550;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.99;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4679,519,0 chrX 509235 . C T 3960.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.15;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3960,409,0 chrX 509679 . G A 4453.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4453,457,0 chrX 509746 . C T 4372.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4372,439,0 chrX 510183 . C T 2531 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.88;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2564,264,0 chrX 510201 . A T 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=0.781;QD=23.14;ReadPosRankSum=1.698;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2393,249,0 chrX 510323 . G A 2521 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.4620;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.71;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2554,264,0 chrX 510389 . C T 2555 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.02;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2588,273,0 chrX 510440 . C T 2969 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=25.16;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:3002,315,0 chrX 510548 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.61;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3611,375,0 chrX 510597 . A G 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.606;QD=22.61;ReadPosRankSum=1.674;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2769,306,0 chrX 510695 . C T 3142 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.93;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3175,336,0 chrX 510812 . G A 3285.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.3855;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.15;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3285,339,0 chrX 510871 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.55;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3425,357,0 chrX 510914 . G A 3078 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3111,333,0 chrX 511245 . T C 3128 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.4223;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.72;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3161,330,0 chrX 511262 . C G 2853 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.23;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,134:141:99:2886,309,0 chrX 511432 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.19;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:3006,309,0 chrX 511529 . C T 3464.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.10;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3464,363,0 chrX 511654 . T C 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=1.473;QD=24.00;ReadPosRankSum=2.421;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:4104,430,0 chrX 511908 . G A 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.277;DP=154;Dels=0.00;FS=2.422;HaplotypeScore=3.9484;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=-0.437;QD=20.82;ReadPosRankSum=3.016;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:4,150:154:99:3240,345,0 chrX 511909 . A G 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.337;DP=154;Dels=0.00;FS=7.112;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=-1.024;QD=20.73;ReadPosRankSum=4.268;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:7,147:154:99:3226,348,0 chrX 511944 . G T 2886 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.3332;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=20.91;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2919,297,0 chrX 511949 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.4463;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.33;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2934,303,0 chrX 512491 . C T 3879.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3879,397,0 chrX 513764 . A G 4540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=191;Dels=0.00;FS=3.657;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.553;QD=23.77;ReadPosRankSum=1.714;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,187:191:99:4540,489,0 chrX 513807 . T C 4079.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;DP=172;Dels=0.00;FS=2.757;HaplotypeScore=16.8706;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.164;QD=23.72;ReadPosRankSum=2.392;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:4079,435,0 chrX 513858 . T C 4545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.2035;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.941;QD=23.07;ReadPosRankSum=1.679;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4545,481,0 chrX 513874 . A G 4958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=218;Dels=0.00;FS=3.774;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.046;QD=22.74;ReadPosRankSum=1.684;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:4958,520,0 chrX 514236 . A G 4473.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.9826;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.67;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4473,477,0 chrX 514320 . A G 4312.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4312,454,0 chrX 514465 . G A 5276.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.20;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5276,553,0 chrX 514783 . A T 4064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=3.302;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.045;QD=26.39;ReadPosRankSum=1.710;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:4064,412,0 chrX 514837 . T C 3794.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.01;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3794,408,0 chrX 514978 . T C 3709.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.23;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3709,390,0 chrX 515263 . C T 4279.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.45;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4279,439,0 chrX 515338 . T C 4519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.351;DP=209;Dels=0.00;FS=9.097;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=-0.331;QD=21.62;ReadPosRankSum=3.393;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:4,204:209:99:4519,478,0 chrX 515351 . A G 4814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=227;Dels=0.00;FS=3.390;HaplotypeScore=11.2334;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-0.374;QD=21.21;ReadPosRankSum=1.717;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4814,519,0 chrX 515450 . C T 6045.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.4442;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.38;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,245:248:99:6045,625,0 chrX 515495 . C T 6272.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=19.7895;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.09;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:6272,637,0 chrX 516190 . C T 2270 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.02;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2303,249,0 chrX 516370 . T G 1963 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=24.54;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1996,210,0 chrX 516436 . G A 2694 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=25.90;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2727,279,0 chrX 516605 . G A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=25.69;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3571,375,0 chrX 516694 . A G 3636.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=22.58;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3636,384,0 chrX 516695 . A G 3655.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=22.29;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3655,387,0 chrX 516707 . C T 3932.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.3071;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=21.97;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3932,406,0 chrX 516831 . C T 3358.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.53;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3358,346,0 chrX 516847 . T C 3221.02 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6987;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.19;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3254,348,0 chrX 516972 . G T 4157.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.09;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4157,427,0 chrX 517094 . A G 2871 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.13;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2904,312,0 chrX 517244 . G C 4275.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.1835;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.49;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4275,462,0 chrX 517494 . T G 3438.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=21.49;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3438,360,0 chrX 517501 . C T 3309.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.30;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3309,340,0 chrX 517556 . G A 3394.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=12.7230;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.33;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3394,343,0 chrX 517771 . A C 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=1.094;QD=22.69;ReadPosRankSum=1.702;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2620,282,0 chrX 517926 . G C 2440 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.02;FS=0.000;HaplotypeScore=14.9356;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.24;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2473,255,0 chrX 518283 . A T 3068 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.17;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3101,327,0 chrX 518442 . G C 1856 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.9331;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;QD=19.74;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,90:94:99:1889,204,0 chrX 518451 . C T 1526 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;QD=19.32;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1559,171,0 chrX 518465 . A G 1270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=-1.489;QD=16.49;ReadPosRankSum=2.354;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1303,141,0 chrX 518469 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=17.21;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1341,144,0 chrX 518494 . G C 1121 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=15.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1154,120,0 chrX 518528 . G A 2032 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=17.52;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2065,207,0 chrX 518612 . G A 563 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.59;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:63:596,63,0 chrX 518647 . G T 592 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.73;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:66:625,66,0 chrX 518721 . C T 1611 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1644,174,0 chrX 518970 . G A 3155 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.1239;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.72;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3188,342,0 chrX 519319 . C T 1804 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=15.03;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1837,186,0 chrX 519377 . G A 1641 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1674,174,0 chrX 519608 . G A 2748 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=16.3189;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.69;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2781,300,0 chrX 520808 . A G 5937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=250;Dels=0.00;FS=3.962;HaplotypeScore=16.1164;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.287;QD=23.75;ReadPosRankSum=1.676;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:1,248:250:99:5937,631,0 chrX 520853 . C T 6505.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=18.6264;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.92;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:6505,694,0 chrX 520985 . A T 5584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=24.5360;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.485;QD=22.34;ReadPosRankSum=1.718;SB=-3.189e+03 GT:AD:DP:GQ:PL 1/1:1,249:250:99:5584,580,0 chrX 521282 . G A 5375.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.8967;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.40;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5375,562,0 chrX 521645 . T G 5209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=214;Dels=0.00;FS=2.955;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.932;QD=24.34;ReadPosRankSum=2.380;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:2,210:214:99:5209,559,0 chrX 522284 . T C 7807.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=20.5865;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.76;SB=-4.201e+03 GT:AD:DP:GQ:PL 1/1:0,339:343:99:7807,856,0 chrX 522481 . C G 8307.01 filter AC=2;AF=1.00;AN=2;DP=394;Dels=0.00;FS=0.000;HaplotypeScore=9.8742;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.08;SB=-4.878e+03 GT:AD:DP:GQ:PL 1/1:0,389:394:99:8307,886,0 chrX 522484 . C T 8359.01 filter AC=2;AF=1.00;AN=2;DP=392;Dels=0.00;FS=0.000;HaplotypeScore=2.8195;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=21.32;SB=-5.206e+03 GT:AD:DP:GQ:PL 1/1:0,388:392:99:8359,871,0 chrX 522503 . G A 6923.01 filter AC=2;AF=1.00;AN=2;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=16.9275;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=19.12;SB=-4.671e+03 GT:AD:DP:GQ:PL 1/1:0,360:362:99:6923,753,0 chrX 522608 . T C 8478.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.235;DP=383;Dels=0.00;FS=9.059;HaplotypeScore=31.4975;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.437;QD=22.14;ReadPosRankSum=3.394;SB=-4.547e+03 GT:AD:DP:GQ:PL 1/1:4,379:383:99:8478,931,0 chrX 522848 . T C 6505.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=13.7937;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.48;SB=-3.003e+03 GT:AD:DP:GQ:PL 1/1:0,333:334:99:6505,723,0 chrX 523142 . C T 4493.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.47;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4493,474,0 chrX 523349 . G A 3680.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.9230;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.05;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3680,376,0 chrX 523373 . C T 4486.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.5870;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.12;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4486,469,0 chrX 523867 . T G 2170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=104;Dels=0.00;FS=4.288;HaplotypeScore=8.5001;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;MQRankSum=0.272;QD=20.87;ReadPosRankSum=1.698;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2203,234,0 chrX 524113 . T G 3603.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=24.68;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3603,390,0 chrX 524213 . T C 5775.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=12.2290;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=24.37;SB=-2.959e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5775,607,0 chrX 524254 . A C 4782.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.4965;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.67;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4782,508,0 chrX 524341 . C T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=21.51;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3270,342,0 chrX 524370 . T C 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=161;Dels=0.00;FS=5.174;HaplotypeScore=7.3371;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;MQRankSum=-1.250;QD=18.68;ReadPosRankSum=1.710;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,157:161:99:3041,345,0 chrX 524384 . T C 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=5.607;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;MQRankSum=-0.909;QD=18.17;ReadPosRankSum=1.667;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:2959,312,0 chrX 524404 . G A 3034 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=18.96;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3067,318,0 chrX 524412 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=18.46;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2968,327,0 chrX 524435 . C T 3146 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.4597;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=20.97;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3179,325,0 chrX 524483 . G T 2168 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.35;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2201,222,0 chrX 524618 . G A 1531 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=23.20;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1564,159,0 chrX 524703 . C A 654 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.55;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:72:687,72,0 chrX 524843 . T G 590 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=28.6070;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=16.86;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:69:623,69,0 chrX 525584 . A G 2324 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.46;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2357,252,0 chrX 525745 . C A 522 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=21.9411;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=7.46;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:60:555,60,0 chrX 525795 . A T 396.03 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;DP=45;Dels=0.00;FS=1.453;HaplotypeScore=7.3418;MLEAC=1;MLEAF=0.500;MQ=55.32;MQ0=0;MQRankSum=0.460;QD=8.80;ReadPosRankSum=2.954;SB=-2.659e+02 GT:AD:DP:GQ:PL 0/1:8,37:45:19:426,0,19 chrX 525992 . T C 3147 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=2.9263;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.14;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3180,339,0 chrX 526016 . G A 3415.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=25.68;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3415,355,0 chrX 526036 . T C 3073 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.93;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3106,336,0 chrX 526305 . A G 5520.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.90;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5520,621,0 chrX 526730 . T C 1530 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.68;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1563,168,0 chrX 526954 . A T 2729 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.37;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2762,291,0 chrX 527002 . G A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.27;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3386,349,0 chrX 528639 . A T 8142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.386;DP=344;Dels=0.00;FS=13.060;HaplotypeScore=14.5270;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.453;QD=23.67;ReadPosRankSum=3.391;SB=-4.522e+03 GT:AD:DP:GQ:PL 1/1:4,340:344:99:8142,841,0 chrX 529581 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2817,288,0 chrX 531760 . T A 4215.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4215,430,0 chrX 532027 . T C 4625.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.13;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4625,498,0 chrX 532743 . C T 5328.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.6503;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=26.12;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5328,553,0 chrX 532916 . T A 5334.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.92;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5334,562,0 chrX 532931 . A G 5091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.754;DP=238;Dels=0.00;FS=11.883;HaplotypeScore=11.7677;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.229;QD=21.39;ReadPosRankSum=3.767;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:5,230:238:99:5091,564,0 chrX 533833 . T C 2166 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.83;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2199,234,0 chrX 534002 . G T 2599 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=23.41;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2632,276,0 chrX 534212 . G A 3885.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=23.13;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3885,402,0 chrX 534224 . T C 3656.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=20.77;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3656,396,0 chrX 534227 . T C 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=3.747;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.050;QD=20.48;ReadPosRankSum=1.692;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3564,393,0 chrX 534296 . A G 4558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.297;QD=23.37;ReadPosRankSum=2.424;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4558,484,0 chrX 534756 . A G 3996.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.3147;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3996,423,0 chrX 534982 . A G 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=149;Dels=0.00;FS=3.006;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.031;QD=23.52;ReadPosRankSum=2.384;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3505,387,0 chrX 535430 . T C 5898.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=8.0971;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.21;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5898,625,0 chrX 535622 . T C 5529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=242;Dels=0.00;FS=10.732;HaplotypeScore=20.1075;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-2.160;QD=22.85;ReadPosRankSum=2.954;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:3,235:242:99:5529,597,0 chrX 535682 . G A 5704.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=14.4027;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.57;SB=-3.004e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5704,601,0 chrX 535766 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.99;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3471,366,0 chrX 535873 . C T 3608.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.2941;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.22;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3608,381,0 chrX 535930 . G C 3416.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.18;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:3416,366,0 chrX 535943 . A T 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=2.998;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.413;QD=23.81;ReadPosRankSum=2.379;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3334,343,0 chrX 536229 . A G 4357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=180;Dels=0.00;FS=4.491;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.269;QD=24.21;ReadPosRankSum=1.713;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4357,451,0 chrX 536262 . C T 4166.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=23.27;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4166,436,0 chrX 536283 . T C 3596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.031;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.3421;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-2.342;QD=19.65;ReadPosRankSum=0.668;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:3596,372,0 chrX 536292 . C G 3175 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.13;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3208,351,0 chrX 536487 . G A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.0653;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=23.88;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4489,463,0 chrX 536691 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=22.83;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3493,381,0 chrX 537357 . C A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.78;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3401,357,0 chrX 537428 . C T 3066 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.88;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3099,327,0 chrX 537465 . A G 2660 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.17;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2693,300,0 chrX 537677 . G A 2411 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=24.86;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2444,255,0 chrX 537808 . C T 629 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=20.29;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:72:662,72,0 chrX 537810 . G A 703 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;QD=21.97;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:78:736,78,0 chrX 537860 . C T 842 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=21.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:96:875,96,0 chrX 538035 . C A 2044 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.87;MQ0=0;QD=26.21;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2077,216,0 chrX 538049 . C T 1595 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.85;MQ0=0;QD=24.17;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1628,168,0 chrX 538083 . T A 513 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.54;MQ0=0;QD=23.32;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:54:546,54,0 chrX 538523 . T C 2185 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1829;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=22.07;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2218,243,0 chrX 538651 . C A 831 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=0;QD=11.87;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:864,102,0 chrX 538652 . T C 822 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=75;Dels=0.00;FS=6.007;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;MQRankSum=-1.663;QD=10.96;ReadPosRankSum=2.501;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:3,72:75:99:855,99,0 chrX 538653 . T C 828 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=11.04;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:861,99,0 chrX 538656 . T C 944 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.275;DP=89;Dels=0.00;FS=8.681;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;MQRankSum=-2.113;QD=10.61;ReadPosRankSum=3.195;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:4,84:89:99:977,111,0 chrX 538984 . T G 3654.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.70;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3654,379,0 chrX 539053 . A G 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-0.878;QD=23.24;ReadPosRankSum=1.683;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3324,354,0 chrX 539105 . A G 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.693;QD=22.42;ReadPosRankSum=1.705;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2948,321,0 chrX 539146 . A G 2797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.675;QD=22.74;ReadPosRankSum=1.675;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2830,306,0 chrX 539272 . A G 2064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=88;Dels=0.00;FS=2.632;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=-1.050;QD=23.45;ReadPosRankSum=2.394;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:2097,228,0 chrX 539275 . G A 2056 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=24.48;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2089,216,0 chrX 539286 . G A 2008 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=23.35;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2041,216,0 chrX 539486 . A T 1160 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=43.6838;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=15.06;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1193,123,0 chrX 539524 . T G 830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=34.66;MQ0=0;MQRankSum=-1.455;QD=11.07;ReadPosRankSum=1.455;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:93:863,93,0 chrX 539612 . T A 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.531;HaplotypeScore=4.1896;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-1.369;QD=22.40;ReadPosRankSum=1.648;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2811,300,0 chrX 539626 . A G 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.135;QD=20.93;ReadPosRankSum=1.678;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2712,294,0 chrX 539652 . A G 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=7.1653;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.828;QD=20.86;ReadPosRankSum=1.707;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2933,315,0 chrX 539780 . C T 1278 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=22.42;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1311,135,0 chrX 540015 . C A 2331 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5769;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.39;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2364,255,0 chrX 540022 . C G 2436 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.1452;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.95;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2469,261,0 chrX 540077 . T C 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.301;QD=20.62;ReadPosRankSum=2.939;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:3,111:115:99:2404,261,0 chrX 540199 . T C 4592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=195;Dels=0.00;FS=6.086;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.755;QD=23.55;ReadPosRankSum=2.943;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:3,190:195:99:4592,498,0 chrX 540433 . A G 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=184;Dels=0.00;FS=2.858;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.919;QD=23.58;ReadPosRankSum=2.423;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:4338,474,0 chrX 540591 . T A 2225 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.03;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2258,234,0 chrX 540639 . A G 1414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=0.526;QD=20.79;ReadPosRankSum=2.377;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1447,156,0 chrX 540663 . T C 1278 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=20.61;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1311,147,0 chrX 540773 . A T 744 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.842;DP=60;Dels=0.00;FS=85.868;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.74;MQ0=0;MQRankSum=1.036;QD=12.40;ReadPosRankSum=3.615;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,53:60:81:777,81,0 chrX 540782 . A G 661 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.055;DP=58;Dels=0.00;FS=84.781;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=0;MQRankSum=2.172;QD=11.40;ReadPosRankSum=2.649;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,51:58:81:694,81,0 chrX 540790 . G C 703 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.48;MQ0=0;QD=11.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:60:81:736,81,0 chrX 540805 . G T 894 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=38.65;MQ0=0;QD=15.96;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:927,99,0 chrX 540929 . A G 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.747;DP=105;Dels=0.00;FS=32.537;HaplotypeScore=7.9074;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=3;MQRankSum=1.760;QD=17.11;ReadPosRankSum=0.040;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:10,95:105:99:1830,195,0 chrX 540972 . A T 1158 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=0;QD=16.08;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1191,132,0 chrX 541000 . C T 1364 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=0;QD=18.68;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1397,144,0 chrX 541067 . C A 1120 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4595;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=0;QD=20.74;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1153,120,0 chrX 541095 . T C 638 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.07;MQ0=0;QD=18.76;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:72:671,72,0 chrX 541169 . A T 830 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.60;MQ0=1;QD=22.43;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:863,87,0 chrX 541188 . C T 806 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.60;MQ0=1;QD=21.78;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:839,87,0 chrX 541428 . T G 32.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;DP=48;Dels=0.00;FS=35.499;HaplotypeScore=4.9259;MLEAC=1;MLEAF=0.500;MQ=31.35;MQ0=3;MQRankSum=0.023;QD=0.67;ReadPosRankSum=2.070;SB=0.079 GT:AD:DP:GQ:PL 0/1:44,4:48:62:62,0,126 chrX 541431 . C T 176.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.058;DP=49;Dels=0.00;FS=18.707;HaplotypeScore=3.9343;MLEAC=2;MLEAF=1.00;MQ=33.48;MQ0=2;MQRankSum=-2.275;QD=3.59;ReadPosRankSum=0.217;SB=-5.988e+00 GT:AD:DP:GQ:PL 1/1:38,10:49:24:209,24,0 chrX 541434 . A C 59.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.021;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=34.47;MQ0=1;MQRankSum=-1.898;QD=1.31;ReadPosRankSum=2.347;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:40,5:45:89:89,0,110 chrX 541439 . T C 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=38.19;MQ0=0;MQRankSum=-2.136;QD=0.43;ReadPosRankSum=-2.793;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:45,4:49:51:51,0,142 chrX 541613 . A T 1517 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=21.37;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1550,162,0 chrX 541712 . A T 2413 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.13;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2446,261,0 chrX 542113 . G A 2817 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.84;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2850,300,0 chrX 542131 . C T 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=155;Dels=0.00;FS=3.067;HaplotypeScore=6.3090;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.900;QD=20.61;ReadPosRankSum=1.440;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3227,336,0 chrX 542293 . C T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.38;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3513,372,0 chrX 542308 . A G 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=4.825;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.148;QD=22.23;ReadPosRankSum=1.690;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3690,399,0 chrX 542620 . G A 4226.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.2691;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.61;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4226,439,0 chrX 542637 . G A 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=3.087;HaplotypeScore=11.9705;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=1.408;QD=23.38;ReadPosRankSum=-1.246;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4022,421,0 chrX 542771 . G A 3734.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.5839;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.19;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3734,388,0 chrX 543047 . T C 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=6.343;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-1.160;QD=23.64;ReadPosRankSum=2.410;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2964,312,0 chrX 543064 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=21.35;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2745,279,0 chrX 543075 . A G 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.457;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.352;QD=20.60;ReadPosRankSum=1.706;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2794,312,0 chrX 543104 . T C 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=3.073;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.223;QD=19.32;ReadPosRankSum=1.658;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:2776,291,0 chrX 543140 . G A 3121 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.62;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3154,322,0 chrX 543215 . C G 2953 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.81;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2986,321,0 chrX 543250 . T G 3635.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=24.07;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3635,384,0 chrX 543266 . C T 3891.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.5411;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=22.49;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3891,414,0 chrX 543721 . A G 475 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=39.04;MQ0=0;QD=4.36;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,105:109:54:508,54,0 chrX 543727 . T C 692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=120;Dels=0.00;FS=9.365;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;MQRankSum=-1.832;QD=5.77;ReadPosRankSum=2.925;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:78:725,78,0 chrX 543776 . T C 2279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.1438;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=-0.280;QD=16.64;ReadPosRankSum=1.681;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2312,243,0 chrX 543878 . T G 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=0.295;QD=20.74;ReadPosRankSum=1.706;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2833,309,0 chrX 543880 . G T 2745 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=20.18;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2778,300,0 chrX 544103 . T C 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.4038;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.965;QD=24.59;ReadPosRankSum=1.710;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3910,417,0 chrX 544322 . C G 3634.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.43;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,157:162:99:3634,387,0 chrX 544484 . C T 5247.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5247,550,0 chrX 544523 . T C 4601.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4601,495,0 chrX 544624 . G A 3514.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3514,361,0 chrX 545038 . A G 4648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.637;DP=239;Dels=0.00;FS=12.028;HaplotypeScore=16.3570;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-0.144;QD=19.45;ReadPosRankSum=3.795;SB=-2.894e+03 GT:AD:DP:GQ:PL 1/1:5,233:239:99:4648,501,0 chrX 545053 . G A 4426.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=19.76;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4426,477,0 chrX 545209 . T C 4017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=198;Dels=0.00;FS=3.028;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-0.118;QD=20.29;ReadPosRankSum=2.400;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4017,435,0 chrX 545233 . C T 4216.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=19.52;SB=-2.934e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4216,436,0 chrX 545239 . C A 4154.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=2.9263;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=19.06;SB=-3.080e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4154,438,0 chrX 545249 . A G 4068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=0.488;QD=18.32;ReadPosRankSum=1.701;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:1,219:222:99:4068,435,0 chrX 545773 . G A 4630.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.14;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4630,481,0 chrX 545817 . G C 2985 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=20.7371;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=19.77;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,146:151:99:3018,336,0 chrX 546078 . T C 3843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=161;Dels=0.00;FS=6.048;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.299;QD=23.87;ReadPosRankSum=2.388;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3843,414,0 chrX 546103 . T C 3801.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.76;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3801,405,0 chrX 546305 . T C 5037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=203;Dels=0.00;FS=5.822;HaplotypeScore=8.6417;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.025;QD=24.81;ReadPosRankSum=2.916;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:3,200:203:99:5037,538,0 chrX 546368 . T A 6048.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=7.3344;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.79;SB=-3.436e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:6048,628,0 chrX 546527 . T C 4281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.3966;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=0.619;QD=21.62;ReadPosRankSum=1.396;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4281,451,0 chrX 546530 . A G 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=190;Dels=0.00;FS=2.571;HaplotypeScore=6.0094;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-0.783;QD=19.73;ReadPosRankSum=2.847;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:3,187:190:99:3748,405,0 chrX 546704 . C T 4146.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.03;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4146,438,0 chrX 546734 . T C 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=170;Dels=0.00;FS=5.898;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-0.566;QD=20.87;ReadPosRankSum=2.887;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:3548,381,0 chrX 546746 . T A 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.073;DP=163;Dels=0.00;FS=2.935;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.746;QD=19.41;ReadPosRankSum=2.344;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3197,339,0 chrX 546803 . T C 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=152;Dels=0.00;FS=2.912;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=1.221;QD=20.11;ReadPosRankSum=2.401;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3089,345,0 chrX 546863 . C T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.6052;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=22.29;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3411,354,0 chrX 546884 . T C 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=174;Dels=0.00;FS=6.033;HaplotypeScore=10.4380;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=0.409;QD=20.13;ReadPosRankSum=2.901;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:3,169:174:99:3502,369,0 chrX 547067 . C T 5200.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=24.41;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5200,535,0 chrX 547082 . C G 4512.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.79;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4512,486,0 chrX 547200 . C T 6061.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.37;SB=-3.452e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:6061,631,0 chrX 547229 . C T 6077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.443;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=12.2881;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.926;QD=21.03;ReadPosRankSum=1.696;SB=-3.618e+03 GT:AD:DP:GQ:PL 1/1:1,287:289:99:6077,611,0 chrX 547598 . C A 4760.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4760,534,0 chrX 547730 . C T 6909.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=19.1040;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.68;SB=-3.312e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:6909,709,0 chrX 547820 . C A 4657.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.7900;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.50;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4657,481,0 chrX 548012 . G A 5080.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.63;SB=-2.915e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5080,520,0 chrX 548069 . G A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.3913;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.56;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3880,409,0 chrX 548174 . T C 3633.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.0748;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.89;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3633,396,0 chrX 548247 . T C 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=126;Dels=0.00;FS=6.884;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.448;QD=19.66;ReadPosRankSum=1.704;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,121:126:99:2510,261,0 chrX 548463 . G A 2134 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.45;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2167,228,0 chrX 548488 . T A 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.313;QD=24.05;ReadPosRankSum=1.704;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3015,321,0 chrX 548667 . A T 3619.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.62;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3619,370,0 chrX 548670 . A G 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=3.456;HaplotypeScore=5.0170;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.866;QD=21.15;ReadPosRankSum=1.669;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3511,381,0 chrX 549010 . T G 8255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=352;Dels=0.00;FS=2.056;HaplotypeScore=27.5897;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.819;QD=23.45;ReadPosRankSum=1.417;SB=-4.610e+03 GT:AD:DP:GQ:PL 1/1:3,346:352:99:8255,877,0 chrX 549542 . T C 5159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=13.7355;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.016;QD=21.77;ReadPosRankSum=1.607;SB=-2.964e+03 GT:AD:DP:GQ:PL 1/1:2,231:237:99:5159,570,0 chrX 550837 . T C 6635.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=9.9078;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.94;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,263:265:99:6635,726,0 chrX 551230 . C T 5476.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.5866;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5476,562,0 chrX 552134 . G A 5645.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.78;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5645,592,0 chrX 552241 . A G 6136.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-3.125e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:6136,652,0 chrX 552529 . T C 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=150;Dels=0.00;FS=3.129;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.749;QD=22.35;ReadPosRankSum=1.709;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3352,369,0 chrX 552584 . A T 3784.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=23.07;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3784,391,0 chrX 552605 . A G 3552.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=22.20;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3552,373,0 chrX 553112 . A G 2998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=127;Dels=0.00;FS=7.001;HaplotypeScore=10.5528;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.107;QD=23.61;ReadPosRankSum=2.411;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:3031,327,0 chrX 553445 . T C 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.560;QD=22.17;ReadPosRankSum=1.681;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,67:70:99:1585,168,0 chrX 554464 . T C 2990 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.4654;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3023,324,0 chrX 554517 . A T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.6183;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.85;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3434,355,0 chrX 554957 . C T 4604.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.61;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4604,475,0 chrX 554999 . C T 3433.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.51;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3433,369,0 chrX 555162 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=13.4583;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;QD=25.53;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3497,364,0 chrX 556366 . T C 4452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=3.710;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.128;QD=22.71;ReadPosRankSum=1.714;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4452,492,0 chrX 557590 . A G 1490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=9.7123;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.080;QD=21.59;ReadPosRankSum=1.682;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1523,165,0 chrX 557799 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.44;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3702,399,0 chrX 558226 . T C 4332.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.93;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4332,462,0 chrX 558314 . T C 5881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=242;Dels=0.00;FS=3.004;HaplotypeScore=9.2888;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.128;QD=24.30;ReadPosRankSum=2.409;SB=-3.152e+03 GT:AD:DP:GQ:PL 1/1:2,239:242:99:5881,616,0 chrX 560037 . T C 4505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=206;Dels=0.00;FS=3.031;HaplotypeScore=11.3534;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.132;QD=21.87;ReadPosRankSum=2.402;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4505,478,0 chrX 560267 . A T 4356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=199;Dels=0.00;FS=2.979;HaplotypeScore=17.4353;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.527;QD=21.89;ReadPosRankSum=2.375;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4356,460,0 chrX 560603 . T G 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.613;HaplotypeScore=4.7483;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.219;QD=25.65;ReadPosRankSum=1.700;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2829,291,0 chrX 561055 . A G 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.970;QD=21.58;ReadPosRankSum=1.683;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3097,333,0 chrX 563290 . G A 3823.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.03;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3823,394,0 chrX 564439 . C T 4294.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4294,448,0 chrX 568363 . G A 4585.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.5046;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.26;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4585,478,0 chrX 568783 . C T 1417 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=14.46;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1450,153,0 chrX 568787 . T C 1368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;MQRankSum=-0.233;QD=13.15;ReadPosRankSum=1.699;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1401,156,0 chrX 568805 . C T 1935 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.4718;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=16.26;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1968,207,0 chrX 568992 . A T 2897 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=23.55;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2930,300,0 chrX 570422 . T C 5199.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=21.3177;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.92;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5199,553,0 chrX 570512 . G A 5269.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.4021;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.73;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5269,550,0 chrX 570648 . C G 2479 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.66;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2512,273,0 chrX 570721 . T C 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=4.849;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.03;MQ0=0;MQRankSum=0.353;QD=20.63;ReadPosRankSum=1.701;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2405,261,0 chrX 570822 . A G 1880 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=20.00;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1913,213,0 chrX 571066 . A G 6048.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=17.5808;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.82;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:6048,643,0 chrX 571276 . T C 5602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=282;Dels=0.00;FS=4.573;HaplotypeScore=20.9455;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.620;QD=19.87;ReadPosRankSum=1.720;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:1,277:282:99:5602,592,0 chrX 571651 . G A 8564.01 PASS AC=2;AF=1.00;AN=2;DP=347;Dels=0.00;FS=0.000;HaplotypeScore=17.5517;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.68;SB=-4.654e+03 GT:AD:DP:GQ:PL 1/1:0,347:347:99:8564,886,0 chrX 571854 . T C 6052.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=18.5938;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.69;SB=-3.111e+03 GT:AD:DP:GQ:PL 1/1:0,277:279:99:6052,652,0 chrX 571909 . G A 5894.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=17.6340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-3.149e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5894,610,0 chrX 572041 . C T 5211.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.13;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5211,538,0 chrX 572117 . A G 3490.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.5163;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3490,372,0 chrX 572450 . G C 4968.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=19.2654;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.11;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,207:215:99:4968,546,0 chrX 572675 . A G 8623.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=379;Dels=0.00;FS=7.988;HaplotypeScore=17.1868;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.795;QD=22.75;ReadPosRankSum=2.365;SB=-4.092e+03 GT:AD:DP:GQ:PL 1/1:2,376:379:99:8623,946,0 chrX 572786 . G T 9532.01 filter AC=2;AF=1.00;AN=2;DP=438;Dels=0.00;FS=0.000;HaplotypeScore=23.0437;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=21.76;SB=-5.607e+03 GT:AD:DP:GQ:PL 1/1:0,433:437:99:9532,1042,0 chrX 572936 . C T 6678.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=30.2804;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.24;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,326:330:99:6678,697,0 chrX 573321 . A G 6535.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=341;Dels=0.00;FS=8.989;HaplotypeScore=6.2401;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=0.079;QD=19.16;ReadPosRankSum=3.380;SB=-4.298e+03 GT:AD:DP:GQ:PL 1/1:4,337:341:99:6535,706,0 chrX 573325 . C T 6646.01 SnpCluster AC=2;AF=1.00;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=19.49;SB=-4.317e+03 GT:AD:DP:GQ:PL 1/1:0,341:341:99:6646,703,0 chrX 573331 . T C 6144.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=332;Dels=0.00;FS=6.354;HaplotypeScore=8.2605;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=1.356;QD=18.51;ReadPosRankSum=2.398;SB=-4.148e+03 GT:AD:DP:GQ:PL 1/1:2,330:332:99:6144,681,0 chrX 573386 . A G 7481.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=364;Dels=0.00;FS=6.045;HaplotypeScore=20.4998;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.738;QD=20.55;ReadPosRankSum=2.953;SB=-4.707e+03 GT:AD:DP:GQ:PL 1/1:3,361:364:99:7481,805,0 chrX 573581 . T C 5956.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=23.27;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:5956,631,0 chrX 573598 . G A 5628.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=21.90;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:5628,586,0 chrX 574034 . C G 4144.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.02;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4144,447,0 chrX 574091 . T C 3279.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.42;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:3279,366,0 chrX 574115 . G A 3020 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=23.97;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3053,324,0 chrX 574232 . G A 3570.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=25.32;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3570,370,0 chrX 574262 . A G 3402.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.65;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3402,357,0 chrX 574310 . G A 4185.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=18.1147;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.91;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4185,439,0 chrX 574412 . C T 4488.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.94;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4488,469,0 chrX 575349 . C T 2293 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=26.06;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2326,240,0 chrX 575549 . G A 3180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.363;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.405;QD=22.39;ReadPosRankSum=1.585;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3213,348,0 chrX 575801 . T C 4229.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.7169;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.32;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4229,445,0 chrX 575876 . C T 3906.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.67;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3906,409,0 chrX 576155 . T C 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=165;Dels=0.00;FS=3.031;HaplotypeScore=16.4963;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.652;QD=24.18;ReadPosRankSum=2.420;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3989,429,0 chrX 576182 . G A 4020.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.4884;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.97;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4020,412,0 chrX 576323 . G A 4860.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.40;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4860,502,0 chrX 577541 . T C 4956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=220;Dels=0.00;FS=9.384;HaplotypeScore=22.8058;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.764;QD=22.53;ReadPosRankSum=2.416;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:2,215:220:99:4956,531,0 chrX 578056 . G A 6748.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=21.6211;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.57;SB=-4.072e+03 GT:AD:DP:GQ:PL 1/1:0,296:299:99:6748,697,0 chrX 578278 . G A 5947.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5947,613,0 chrX 578407 . G C 4282.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.1111;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4282,468,0 chrX 578455 . T C 4677.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4677,504,0 chrX 578878 . A G 4324.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=24.16;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4324,460,0 chrX 578893 . C T 4437.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.9948;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=25.35;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4437,451,0 chrX 578943 . C T 4288.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.05;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4288,448,0 chrX 579112 . A G 5584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=254;Dels=0.00;FS=9.776;HaplotypeScore=17.3734;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.290;QD=21.98;ReadPosRankSum=2.933;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:3,250:254:99:5584,598,0 chrX 579361 . A T 4137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=177;Dels=0.00;FS=2.995;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.603;QD=23.37;ReadPosRankSum=2.325;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4137,424,0 chrX 579663 . G A 5863.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=23.27;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5863,610,0 chrX 579671 . G A 5717.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.33;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5717,592,0 chrX 580068 . C T 3946.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9612;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=24.51;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3946,411,0 chrX 580104 . T C 3988.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.92;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3988,429,0 chrX 580119 . T C 4205.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.13;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4205,453,0 chrX 580312 . T C 1386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=77;Dels=0.00;FS=7.758;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.970;QD=18.00;ReadPosRankSum=2.384;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:2,73:77:99:1419,153,0 chrX 580362 . C G 2992 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.5801;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=26.25;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:3025,315,0 chrX 580576 . A G 4287.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.0826;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.05;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4287,474,0 chrX 580666 . T A 4762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=216;Dels=0.00;FS=3.851;HaplotypeScore=8.7804;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.305;QD=22.05;ReadPosRankSum=1.668;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4762,490,0 chrX 580696 . G A 5000.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.7017;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.94;SB=-2.935e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5000,517,0 chrX 581086 . T C 3051 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=19.94;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3084,339,0 chrX 581101 . A G 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=136;Dels=0.00;FS=3.014;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.756;QD=18.65;ReadPosRankSum=2.413;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2570,279,0 chrX 581428 . A C 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.044;QD=23.86;ReadPosRankSum=1.663;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3651,399,0 chrX 581494 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.11;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3192,345,0 chrX 581638 . G C 706 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=10.70;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,65:66:78:739,78,0 chrX 581739 . A G 201.03 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=7.45;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,26:27:24:234,24,0 chrX 581835 . T C 1805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=-0.239;QD=14.67;ReadPosRankSum=1.704;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:1,122:123:99:1838,198,0 chrX 581859 . C T 2197 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=16.27;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2230,234,0 chrX 581933 . C T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.36;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3776,396,0 chrX 582214 . T C 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=172;Dels=0.00;FS=3.035;HaplotypeScore=12.7882;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.749;QD=23.97;ReadPosRankSum=2.333;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:2,167:172:99:4122,435,0 chrX 582415 . G A 2782 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=105.9602;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=22.62;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2815,288,0 chrX 582462 . A T 2119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=114;Dels=0.00;FS=2.857;HaplotypeScore=85.0607;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.874;QD=18.59;ReadPosRankSum=2.407;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2152,234,0 chrX 582558 . G A 2784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.0862;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;MQRankSum=1.052;QD=24.64;ReadPosRankSum=1.485;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2817,276,0 chrX 582845 . G T 3828.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.7272;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.20;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3828,405,0 chrX 583236 . C T 2865 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=13.2869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2898,297,0 chrX 583447 . G A 4481.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.1797;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.76;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4481,466,0 chrX 583490 . C T 4559.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.0732;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.13;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4559,472,0 chrX 583848 . C T 4932.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.8255;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.78;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4932,511,0 chrX 584125 . G A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=23.60;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3375,346,0 chrX 584131 . T C 2867 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.63;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2900,327,0 chrX 584209 . G A 2488 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.47;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2521,261,0 chrX 584485 . C T 4992.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.3984;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.09;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4992,520,0 chrX 584584 . A G 4827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=233;Dels=0.00;FS=4.445;HaplotypeScore=5.6929;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-1.492;QD=20.72;ReadPosRankSum=1.717;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:1,230:233:99:4827,531,0 chrX 584590 . C G 4618.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.3600;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=20.25;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,222:228:99:4618,496,0 chrX 584641 . A G 4757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=247;Dels=0.00;FS=7.707;HaplotypeScore=8.0994;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.432;QD=19.26;ReadPosRankSum=0.224;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:4757,511,0 chrX 584668 . G A 4928.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=13.5627;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.03;SB=-2.966e+03 GT:AD:DP:GQ:PL 1/1:0,243:246:99:4928,534,0 chrX 584800 . T C 6533.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.68;SB=-3.671e+03 GT:AD:DP:GQ:PL 1/1:0,287:288:99:6533,700,0 chrX 584922 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.23;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3468,355,0 chrX 584992 . C T 4163.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.13;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4163,427,0 chrX 585612 . A G 3472.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=0;QD=19.18;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3472,369,0 chrX 585618 . G A 3313.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=18.01;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3313,351,0 chrX 585641 . A G 2286 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=151;Dels=0.00;FS=5.371;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;MQRankSum=-1.447;QD=15.14;ReadPosRankSum=2.954;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:2319,249,0 chrX 585642 . A G 2283 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.21;MQ0=0;QD=15.43;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2316,249,0 chrX 585643 . A G 2307 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;QD=15.38;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2340,252,0 chrX 585779 . A G 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=136;Dels=0.00;FS=2.982;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;MQRankSum=-0.823;QD=20.02;ReadPosRankSum=2.359;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2756,303,0 chrX 585794 . T C 2313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=117;Dels=0.00;FS=6.441;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;MQRankSum=-0.032;QD=19.77;ReadPosRankSum=2.324;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2346,252,0 chrX 585867 . T G 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=137;Dels=0.00;FS=3.172;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;MQRankSum=-0.822;QD=22.72;ReadPosRankSum=1.707;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3146,339,0 chrX 585923 . C T 3363.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=23.03;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3363,346,0 chrX 585937 . T G 2909 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=20.63;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2942,318,0 chrX 586163 . A G 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=2.929;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.315;QD=23.12;ReadPosRankSum=2.412;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3015,321,0 chrX 586627 . G A 2853 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=26.42;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2886,309,0 chrX 586715 . G A 4025.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=24.85;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4025,412,0 chrX 586827 . A G 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=23.0313;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.170;QD=21.95;ReadPosRankSum=1.710;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3381,369,0 chrX 586915 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=142;Dels=0.00;FS=7.238;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-0.788;QD=22.70;ReadPosRankSum=2.311;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3256,354,0 chrX 586932 . C T 3103 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=21.55;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3136,345,0 chrX 586948 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=20.01;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2974,301,0 chrX 586966 . G A 2740 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=19.16;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2773,291,0 chrX 587344 . A G 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.246;DP=140;Dels=0.00;FS=15.274;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.344;QD=23.46;ReadPosRankSum=3.358;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:4,136:140:99:3285,345,0 chrX 587423 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=142;Dels=0.00;FS=5.328;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.426;QD=23.04;ReadPosRankSum=2.951;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3272,339,0 chrX 587511 . G T 5518.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5518,571,0 chrX 587592 . A G 4481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=178;Dels=0.00;FS=7.038;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.229;QD=25.17;ReadPosRankSum=2.408;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4481,483,0 chrX 587671 . G T 4625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=4.049;HaplotypeScore=8.7579;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-0.977;QD=24.47;ReadPosRankSum=0.995;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4625,475,0 chrX 587808 . G C 3326.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=9.4562;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.16;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:3326,366,0 chrX 587843 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.117;DP=172;Dels=0.00;FS=3.006;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.210;QD=19.67;ReadPosRankSum=2.348;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3384,366,0 chrX 588360 . T C 4513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.689;DP=197;Dels=0.00;FS=11.937;HaplotypeScore=8.5546;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.537;QD=22.91;ReadPosRankSum=3.769;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:5,190:197:99:4513,483,0 chrX 588782 . T C 4035.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.38;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4035,424,0 chrX 588893 . G A 3473.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3473,358,0 chrX 589267 . T G 3557.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.2811;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.23;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3557,381,0 chrX 589418 . A G 3777.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.85;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3777,396,0 chrX 589497 . A G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.169;DP=115;Dels=0.00;FS=3.043;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.313;QD=23.09;ReadPosRankSum=2.407;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2688,285,0 chrX 589577 . C T 3597.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.21;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3597,387,0 chrX 589790 . T C 2729 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.37;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2762,300,0 chrX 589855 . G A 2434 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.54;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2467,249,0 chrX 589903 . T C 2586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.351;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.013;QD=24.17;ReadPosRankSum=1.699;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2619,291,0 chrX 589982 . G A 2851 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2884,297,0 chrX 590030 . A G 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=4.089;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.658;QD=25.60;ReadPosRankSum=1.697;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2593,276,0 chrX 590085 . C G 1712 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1745,186,0 chrX 590193 . T C 2017 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2050,216,0 chrX 590713 . G A 4048.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.1580;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=25.30;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4048,409,0 chrX 590923 . A G 4850.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.35;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4850,543,0 chrX 590949 . C T 5715.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=10.4235;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.14;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5715,607,0 chrX 591544 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.43;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3300,337,0 chrX 591553 . A G 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=152;Dels=0.00;FS=4.658;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=0.820;QD=21.53;ReadPosRankSum=1.687;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3273,354,0 chrX 591944 . A G 3562.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.75;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3562,381,0 chrX 591972 . A G 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=162;Dels=0.00;FS=8.619;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.878;QD=23.14;ReadPosRankSum=2.419;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3749,393,0 chrX 592363 . A G 3529.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.20;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3529,387,0 chrX 592549 . A T 3951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.3477;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.044;QD=24.54;ReadPosRankSum=1.711;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3951,403,0 chrX 592687 . C T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.44;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4045,418,0 chrX 592732 . A G 4058.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.3933;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.32;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,169:174:99:4058,447,0 chrX 592918 . G C 5022.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=22.1998;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.93;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,214:219:99:5022,541,0 chrX 593029 . C T 4451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.9681;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.737;QD=23.43;ReadPosRankSum=0.461;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4451,466,0 chrX 593074 . T C 4727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=4.603;HaplotypeScore=7.4705;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.737;QD=23.06;ReadPosRankSum=1.681;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,201:205:99:4727,510,0 chrX 593414 . C G 3295.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4760;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.71;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3295,348,0 chrX 593730 . G C 3190 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.62;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3223,354,0 chrX 593953 . C T 4992.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=23.00;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4992,532,0 chrX 594033 . G T 5022.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=22.72;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5022,517,0 chrX 594047 . G T 5311.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=5.6915;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=22.60;SB=-3.099e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5311,547,0 chrX 594204 . T C 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.195;DP=193;Dels=0.01;FS=5.723;HaplotypeScore=176.9652;MLEAC=1;MLEAF=0.500;MQ=43.58;MQ0=0;MQRankSum=0.972;QD=0.21;ReadPosRankSum=-5.914;SB=-1.550e+02 GT:AD:DP:GQ:PL 0/1:177,14:192:70:70,0,651 chrX 594216 . T C 1202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.736;DP=206;Dels=0.00;FS=12.079;HaplotypeScore=8.4386;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;MQRankSum=-2.286;QD=5.83;ReadPosRankSum=2.835;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:5,201:206:99:1235,135,0 chrX 594711 . T C 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=121;Dels=0.00;FS=4.393;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-1.131;QD=21.78;ReadPosRankSum=1.646;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2668,288,0 chrX 594733 . A G 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=1.139;QD=22.16;ReadPosRankSum=1.701;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2493,273,0 chrX 595037 . G A 3680.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.40;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3680,376,0 chrX 595041 . T C 3596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=180;Dels=0.00;FS=2.905;HaplotypeScore=7.4755;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.117;QD=19.98;ReadPosRankSum=2.408;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3596,387,0 chrX 595640 . G C 3989.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=18.8171;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.55;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,196:204:99:3989,438,0 chrX 595662 . A G 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=198;Dels=0.00;FS=5.759;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.214;QD=20.41;ReadPosRankSum=2.953;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:3,190:198:99:4041,438,0 chrX 595994 . T C 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.5767;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.039;QD=22.29;ReadPosRankSum=1.674;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4013,435,0 chrX 596003 . A C 4017.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.19;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4017,424,0 chrX 596318 . C T 4962.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.5653;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=23.19;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4962,514,0 chrX 596360 . G A 4302.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.73;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4302,445,0 chrX 596371 . T C 4048.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.3306;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.31;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4048,444,0 chrX 596468 . G C 6137.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=18.6953;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.60;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:6137,681,0 chrX 596603 . T C 4067.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.8598;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.44;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4067,438,0 chrX 596612 . T C 4079.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=204;Dels=0.00;FS=3.411;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-0.442;QD=20.00;ReadPosRankSum=1.698;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4079,432,0 chrX 596669 . G A 4495.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.5458;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.34;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4495,457,0 chrX 596775 . T G 4577.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.22;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4577,478,0 chrX 597461 . A G 5084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=233;Dels=0.00;FS=6.077;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.866;QD=21.82;ReadPosRankSum=2.386;SB=-2.985e+03 GT:AD:DP:GQ:PL 1/1:2,229:233:99:5084,570,0 chrX 597659 . G A 6919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=16.1839;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.029;QD=23.06;ReadPosRankSum=-1.512;SB=-3.525e+03 GT:AD:DP:GQ:PL 1/1:1,298:300:99:6919,762,0 chrX 597944 . G A 4112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=17.3600;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.713;QD=22.72;ReadPosRankSum=1.407;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4112,430,0 chrX 598115 . T C 4433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.514;QD=23.09;ReadPosRankSum=1.714;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4433,483,0 chrX 598202 . T C 4438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=194;Dels=0.00;FS=6.066;HaplotypeScore=11.3883;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.767;QD=22.88;ReadPosRankSum=2.922;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:4438,474,0 chrX 598360 . T A 4438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=3.411;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.283;QD=22.99;ReadPosRankSum=1.714;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4438,474,0 chrX 598412 . T G 4105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=195;Dels=0.00;FS=3.288;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.714;QD=21.05;ReadPosRankSum=1.661;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4105,447,0 chrX 598472 . A C 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.511;QD=20.56;ReadPosRankSum=1.632;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3577,381,0 chrX 598877 . A G 3822.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3822,414,0 chrX 599340 . C T 6940.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=24.7814;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.45;SB=-3.119e+03 GT:AD:DP:GQ:PL 1/1:0,296:296:99:6940,712,0 chrX 599394 . T C 7344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=14.1041;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.406;QD=24.08;ReadPosRankSum=1.675;SB=-3.478e+03 GT:AD:DP:GQ:PL 1/1:1,302:305:99:7344,784,0 chrX 599916 . A C 4221.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4930;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:99:4221,448,0 chrX 600173 . T C 4841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=194;Dels=0.00;FS=3.218;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=1.140;QD=24.95;ReadPosRankSum=1.714;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4841,502,0 chrX 600241 . C T 3784.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6244;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.52;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3784,399,0 chrX 600288 . A T 4096.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.44;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4096,427,0 chrX 600396 . A C 5610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=233;Dels=0.00;FS=9.549;HaplotypeScore=15.5352;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.182;QD=24.08;ReadPosRankSum=2.970;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:3,229:233:99:5610,607,0 chrX 600487 . C T 3823.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.9231;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.62;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3823,402,0 chrX 600589 . T C 6012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=9.8086;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.706;QD=22.95;ReadPosRankSum=1.719;SB=-3.200e+03 GT:AD:DP:GQ:PL 1/1:1,261:262:99:6012,637,0 chrX 600714 . T G 5105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.158;DP=224;Dels=0.00;FS=5.874;HaplotypeScore=18.2116;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.380;QD=22.79;ReadPosRankSum=2.887;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:3,219:224:99:5105,541,0 chrX 600970 . A G 4535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=195;Dels=0.00;FS=5.964;HaplotypeScore=9.6457;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=2.016;QD=23.26;ReadPosRankSum=2.933;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:3,192:195:99:4535,498,0 chrX 601021 . G A 4043.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.96;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4043,415,0 chrX 601098 . C T 3050 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.68;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3083,324,0 chrX 601100 . T C 2955 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.19;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2988,324,0 chrX 601587 . C T 5497.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5497,571,0 chrX 602432 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=4.292;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.594;QD=24.19;ReadPosRankSum=1.707;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3338,375,0 chrX 602469 . C T 3725.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3725,385,0 chrX 602644 . T C 4851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.5733;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.078;QD=24.38;ReadPosRankSum=1.697;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4851,522,0 chrX 602831 . G A 4209.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.20;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4209,439,0 chrX 603039 . T C 2438 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.16;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2471,261,0 chrX 603092 . G A 2500 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.37;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2533,261,0 chrX 603257 . T C 4365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.021;QD=26.30;ReadPosRankSum=1.711;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4365,465,0 chrX 603329 . C T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3664,382,0 chrX 603633 . T G 4261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=188;Dels=0.00;FS=2.567;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.663;QD=22.66;ReadPosRankSum=2.963;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:4261,477,0 chrX 604040 . G A 5410.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.0710;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=24.59;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5410,553,0 chrX 604069 . C T 3518.01 SnpCluster AC=2;AF=1.00;AN=2;DP=202;Dels=0.03;FS=0.000;HaplotypeScore=13.5861;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=17.42;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,192:196:99:3518,411,0 chrX 604070 . C T 3372.01 SnpCluster AC=2;AF=1.00;AN=2;DP=198;Dels=0.03;FS=0.000;HaplotypeScore=19.3852;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;QD=17.03;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3372,410,0 chrX 604072 . T C 3378.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.036;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=20.1738;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;MQRankSum=-1.760;QD=17.15;ReadPosRankSum=2.287;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:3378,410,0 chrX 604111 . T G 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;MQRankSum=0.284;QD=18.20;ReadPosRankSum=1.714;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:3458,387,0 chrX 604156 . G A 4605.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.63;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4605,472,0 chrX 604715 . T C 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.445;QD=24.28;ReadPosRankSum=1.701;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2777,294,0 chrX 604788 . G T 3378.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=25.21;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3378,346,0 chrX 604929 . G A 2586 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2619,273,0 chrX 605076 . G A 2802 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9338;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.60;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2835,303,0 chrX 605082 . A G 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=118;Dels=0.00;FS=8.609;HaplotypeScore=5.9826;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=1.187;QD=21.91;ReadPosRankSum=2.065;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:2,113:118:99:2618,285,0 chrX 605173 . C T 4480.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.48;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4480,466,0 chrX 605419 . T C 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.029;QD=24.31;ReadPosRankSum=1.713;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:1,180:185:99:4498,498,0 chrX 605547 . G A 2631 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.6195;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.68;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2664,297,0 chrX 606285 . C A 3998.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=23.66;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3998,421,0 chrX 606300 . T A 3994.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=23.77;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3994,406,0 chrX 606367 . T C 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=186;Dels=0.00;FS=10.710;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;MQRankSum=-0.698;QD=17.89;ReadPosRankSum=2.962;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:3,180:186:99:3327,360,0 chrX 606382 . C A 4013.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;QD=19.58;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4013,426,0 chrX 606409 . C G 2859 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=15.05;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:2892,330,0 chrX 606410 . G A 3035 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;QD=16.14;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3068,327,0 chrX 606423 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=3.153;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;MQRankSum=-1.341;QD=15.28;ReadPosRankSum=1.713;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:2875,312,0 chrX 606479 . A G 2874 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=18.91;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2907,315,0 chrX 606498 . A C 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=178;Dels=0.00;FS=2.131;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;MQRankSum=-0.236;QD=21.55;ReadPosRankSum=2.834;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:3,172:178:99:3836,385,0 chrX 606575 . A G 4138.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.23;MQ0=0;QD=21.66;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4138,444,0 chrX 606584 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.09;MQ0=0;QD=22.29;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3767,405,0 chrX 606614 . T G 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.608;DP=171;Dels=0.00;FS=16.242;HaplotypeScore=149.5004;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;MQRankSum=-2.370;QD=18.81;ReadPosRankSum=3.764;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:5,166:171:99:3249,357,0 chrX 606726 . T C 4860.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=19.92;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:4860,537,0 chrX 606777 . C G 2305 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=217.8677;MLEAC=2;MLEAF=1.00;MQ=30.97;MQ0=0;QD=13.72;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:2338,255,0 chrX 606787 . T A 915 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.24;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:948,120,0 chrX 606788 . C A 711 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.41;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:744,99,0 chrX 606789 . C A 616 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.55;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:87:649,87,0 chrX 606791 . C T 234 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.11;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:36:267,36,0 chrX 606792 . T C 234 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.767;DP=118;Dels=0.00;FS=12.424;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;MQRankSum=-3.767;QD=1.98;ReadPosRankSum=3.687;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:5,113:118:36:267,36,0 chrX 606841 . T C 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=191;Dels=0.00;FS=5.868;HaplotypeScore=7.1045;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;MQRankSum=-0.942;QD=15.33;ReadPosRankSum=2.932;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:2961,321,0 chrX 606964 . A T 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=163;Dels=0.00;FS=2.472;HaplotypeScore=15.2251;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;MQRankSum=-0.994;QD=18.59;ReadPosRankSum=2.932;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3063,318,0 chrX 606979 . G A 2833 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;QD=19.40;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2866,300,0 chrX 607047 . T C 2559 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=21.15;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2592,291,0 chrX 607230 . C T 1645 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=22.85;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1678,168,0 chrX 607232 . C T 1540 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=21.39;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1573,168,0 chrX 607262 . T C 869 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=19.75;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:902,99,0 chrX 607298 . G A 1078 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.00;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1111,117,0 chrX 607361 . C T 1725 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=20.29;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1758,180,0 chrX 607387 . C T 1425 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=18.27;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1458,150,0 chrX 607391 . G A 1340 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=18.36;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1373,141,0 chrX 607434 . A T 602 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;QD=12.81;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:69:635,69,0 chrX 607442 . T C 536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.163;DP=44;Dels=0.00;FS=8.765;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;MQRankSum=0.663;QD=12.18;ReadPosRankSum=2.336;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:2,41:44:60:569,60,0 chrX 607458 . G T 649 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;QD=16.64;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:75:682,75,0 chrX 607508 . G A 1452 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=24.20;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1485,156,0 chrX 607523 . G T 1582 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=21.09;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1615,174,0 chrX 607528 . C A 1745 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=22.66;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1778,186,0 chrX 607636 . G A 2016 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=27.24;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2049,213,0 chrX 607672 . T C 1659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.2547;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;MQRankSum=-0.854;QD=23.37;ReadPosRankSum=1.586;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1692,183,0 chrX 607746 . A G 1788 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=19.23;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1821,198,0 chrX 607750 . C T 1958 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=19.20;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1991,210,0 chrX 607764 . T C 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=5.323;HaplotypeScore=5.5116;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;MQRankSum=-0.747;QD=17.61;ReadPosRankSum=1.700;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1953,222,0 chrX 607806 . C T 1720 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=15.93;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1753,189,0 chrX 607808 . T C 1630 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=15.23;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1663,192,0 chrX 607843 . A G 1176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=80;Dels=0.00;FS=2.448;HaplotypeScore=37.8921;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;MQRankSum=-0.076;QD=14.70;ReadPosRankSum=2.862;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1209,135,0 chrX 607948 . T C 1276 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=20.58;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1309,147,0 chrX 607975 . T C 1220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=65;Dels=0.02;FS=3.291;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=-0.595;QD=18.77;ReadPosRankSum=1.678;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1253,132,0 chrX 608011 . T A 1221 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=18.50;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1254,135,0 chrX 608091 . C T 2100 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=10.2399;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=25.00;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2133,222,0 chrX 608120 . A G 2249 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.05;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2282,249,0 chrX 608157 . C T 1929 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.92;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1962,201,0 chrX 608181 . A C 1538 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=16.90;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1571,174,0 chrX 608184 . A T 1617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=4.629;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-1.039;QD=17.97;ReadPosRankSum=1.655;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1650,171,0 chrX 608299 . A G 3843.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=24.79;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3843,423,0 chrX 608323 . G A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=24.16;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4035,418,0 chrX 608495 . C T 2923 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.20;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2956,312,0 chrX 608521 . G A 2588 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.21;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2621,270,0 chrX 609410 . C G 3608.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3608,381,0 chrX 609498 . G T 2882 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.00;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2915,300,0 chrX 609835 . T A 3640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.519;QD=23.18;ReadPosRankSum=1.710;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3640,387,0 chrX 610270 . C T 5572.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=10.2712;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.71;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5572,595,0 chrX 610450 . T G 5131.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.41;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5131,573,0 chrX 610784 . G A 2623 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.15;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2656,276,0 chrX 610792 . C A 2386 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.05;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2419,246,0 chrX 610951 . T C 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.728;DP=144;Dels=0.00;FS=2.589;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.007;QD=24.63;ReadPosRankSum=2.770;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3546,375,0 chrX 612210 . A C 2435 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.8750;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.14;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2468,261,0 chrX 612277 . C G 3164 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.52;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3197,336,0 chrX 613117 . T A 1551 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=25.43;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1584,168,0 chrX 613137 . A G 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=62;Dels=0.00;FS=9.402;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.335;QD=22.92;ReadPosRankSum=1.675;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:1,60:62:99:1454,165,0 chrX 618038 . T C 3738.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.4079;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.12;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:3738,396,0 chrX 618415 . A G 4672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=7.2027;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-0.095;QD=19.55;ReadPosRankSum=1.717;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:1,236:239:99:4672,507,0 chrX 618419 . T C 4421.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.06;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:4421,469,0 chrX 618867 . G T 4208.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4208,439,0 chrX 619199 . C G 3604.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.0366;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.56;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3604,387,0 chrX 619587 . C T 4044.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.09;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4044,412,0 chrX 619975 . C T 2511 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=25.36;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2544,270,0 chrX 620010 . C G 1754 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.49;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1787,192,0 chrX 620054 . T C 1670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=4.607;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;MQRankSum=0.799;QD=21.41;ReadPosRankSum=1.688;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1703,183,0 chrX 620064 . T C 1630 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=22.03;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1663,177,0 chrX 620255 . T A 1123 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.02;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1156,120,0 chrX 620284 . G A 698 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=18.86;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:75:731,75,0 chrX 620362 . T C 454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.438;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;MQRankSum=1.659;QD=9.66;ReadPosRankSum=0.332;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:54:487,54,0 chrX 620371 . T C 506 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.4135;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=9.73;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:60:539,60,0 chrX 620583 . T C 1766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.042;DP=91;Dels=0.00;FS=3.016;HaplotypeScore=9.4109;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=0.095;QD=19.41;ReadPosRankSum=1.800;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1799,195,0 chrX 620736 . T G 39.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.788;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=100.7743;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-1.224;QD=0.37;ReadPosRankSum=-3.237;SB=-7.797e+01 GT:AD:DP:GQ:PL 1/1:104,5:109:9:72,9,0 chrX 621779 . A G 5702.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-3.016e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5702,630,0 chrX 621875 . T G 5122.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=19.6993;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.17;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5122,573,0 chrX 622079 . C T 4121.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.7670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4121,441,0 chrX 622386 . C T 4139.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.12;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4139,427,0 chrX 622424 . A G 4376.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.77;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4376,477,0 chrX 622445 . A T 5196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=7.1480;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-1.199;QD=22.21;ReadPosRankSum=1.717;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:5196,544,0 chrX 622592 . G A 7267.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=25.50;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,283:285:99:7267,772,0 chrX 622799 . A G 8009.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=369;Dels=0.00;FS=0.000;HaplotypeScore=11.8366;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=0.906;QD=21.70;ReadPosRankSum=1.723;SB=-3.738e+03 GT:AD:DP:GQ:PL 1/1:1,368:369:99:8009,877,0 chrX 622874 . G A 5248.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=13.6346;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.72;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5248,547,0 chrX 622910 . G A 4623.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.12;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4623,484,0 chrX 623040 . T C 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.6435;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.964;QD=21.36;ReadPosRankSum=1.695;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:3994,423,0 chrX 623184 . C G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=18.69;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3269,369,0 chrX 623186 . C T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=20.27;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3446,363,0 chrX 623571 . G A 5152.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=26.9389;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:5152,541,0 chrX 624405 . T C 5086.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=11.4047;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.76;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5086,549,0 chrX 624474 . C T 4128.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=18.5484;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.94;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4128,424,0 chrX 624670 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3826,414,0 chrX 624789 . T G 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=0.196;QD=19.96;ReadPosRankSum=2.264;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:2,117:121:99:2448,261,0 chrX 624801 . A G 2573 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=18.92;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2606,291,0 chrX 625035 . C T 4504.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.4502;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.63;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4504,475,0 chrX 625116 . A G 4406.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=20.6570;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.14;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4406,477,0 chrX 625188 . T C 4742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=234;Dels=0.00;FS=7.728;HaplotypeScore=6.0586;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-1.891;QD=20.26;ReadPosRankSum=2.407;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:2,231:234:99:4742,522,0 chrX 625191 . G A 4946.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=22.28;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4946,514,0 chrX 625737 . C G 5259.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.10;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5259,573,0 chrX 625757 . A G 4952.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.91;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4952,529,0 chrX 625794 . G A 4391.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=20.1191;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.42;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4391,460,0 chrX 625994 . T C 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=3.533;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.161;QD=22.45;ReadPosRankSum=1.625;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2211,246,0 chrX 626304 . T C 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.746;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.575;QD=23.14;ReadPosRankSum=1.710;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3564,384,0 chrX 626625 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2567,267,0 chrX 626664 . G A 2217 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2250,237,0 chrX 626736 . A C 3091 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.2457;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.77;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3124,333,0 chrX 626946 . C T 2608 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.93;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2641,279,0 chrX 627062 . C G 2658 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.84;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2691,291,0 chrX 627134 . T C 2564 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.91;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2597,279,0 chrX 627282 . G A 2888 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.1083;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.29;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2921,300,0 chrX 627341 . T C 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.600;DP=140;Dels=0.00;FS=7.620;HaplotypeScore=9.5010;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.912;QD=22.49;ReadPosRankSum=3.635;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:5,133:140:99:3181,345,0 chrX 627474 . C T 4859.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.8452;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.05;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4859,505,0 chrX 627547 . G A 4820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=191;Dels=0.00;FS=3.220;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.825;QD=25.24;ReadPosRankSum=1.025;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4820,493,0 chrX 627628 . T C 3776.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.75;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3776,402,0 chrX 627942 . G A 3587.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.14;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3587,367,0 chrX 627948 . G A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.47;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3564,378,0 chrX 628038 . A G 2383 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.230;DP=123;Dels=0.00;FS=8.379;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-0.192;QD=19.37;ReadPosRankSum=3.272;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:4,119:123:99:2416,261,0 chrX 628044 . T C 2302 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=3.455;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=0.138;QD=20.02;ReadPosRankSum=1.701;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2335,249,0 chrX 628048 . G A 2328 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=19.90;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2361,240,0 chrX 628319 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.31;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2740,282,0 chrX 628435 . A T 2501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.050;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-1.264;QD=22.53;ReadPosRankSum=1.701;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2534,261,0 chrX 628454 . C T 2395 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.7122;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.95;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2428,246,0 chrX 628623 . T C 2322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.227;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;MQRankSum=-0.418;QD=22.54;ReadPosRankSum=0.514;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2355,236,0 chrX 628891 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;QD=22.66;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3399,360,0 chrX 628897 . A T 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=45.67;MQ0=0;MQRankSum=-0.296;QD=23.28;ReadPosRankSum=0.000;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3538,343,0 chrX 629035 . G A 3715.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=20.19;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3715,393,0 chrX 629082 . A G 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.7678;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;MQRankSum=0.250;QD=20.47;ReadPosRankSum=1.712;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3562,381,0 chrX 629091 . T C 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=4.095;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;MQRankSum=0.302;QD=20.14;ReadPosRankSum=1.672;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3505,387,0 chrX 629098 . G C 3550.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=19.61;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3550,378,0 chrX 629134 . T C 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=200;Dels=0.00;FS=3.680;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=0.230;QD=20.68;ReadPosRankSum=1.679;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:1,195:200:99:4136,444,0 chrX 629161 . A T 4001.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.7149;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=20.01;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4001,426,0 chrX 629183 . C T 4427.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.02;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:4427,454,0 chrX 629316 . T G 2528 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.22;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2561,282,0 chrX 629482 . G A 1401 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=21.55;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1434,147,0 chrX 629495 . G A 1160 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=21.89;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1193,120,0 chrX 629566 . A G 861 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=14.6189;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=16.88;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:894,102,0 chrX 629879 . A G 3520.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.79;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3520,375,0 chrX 630149 . A T 4958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.523;QD=22.95;ReadPosRankSum=1.716;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4958,537,0 chrX 630373 . A G 4572.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.94;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4572,481,0 chrX 630419 . G A 4815.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.1390;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.04;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4815,522,0 chrX 630494 . C T 5320.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=25.95;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5320,559,0 chrX 630716 . C T 4825.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.83;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4825,508,0 chrX 630728 . A C 4677.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.8877;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.36;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4677,504,0 chrX 631268 . T C 2854 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.53;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2887,318,0 chrX 631286 . C T 2635 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.75;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2668,282,0 chrX 631978 . A G 4609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=217;Dels=0.00;FS=2.697;HaplotypeScore=5.1230;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.945;QD=21.24;ReadPosRankSum=2.393;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:4609,504,0 chrX 631982 . T C 4381.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.3343;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.96;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4381,483,0 chrX 633487 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.43;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3687,396,0 chrX 638730 . T C 4319.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.6458;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.86;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4319,477,0 chrX 639041 . T C 5453.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=6.9978;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.44;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5453,591,0 chrX 640030 . T C 359.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.118;DP=213;Dels=0.00;FS=3.937;HaplotypeScore=18.4685;MLEAC=1;MLEAF=0.500;MQ=60.85;MQ0=3;MQRankSum=-1.825;QD=1.69;ReadPosRankSum=4.821;SB=-1.979e+03 GT:AD:DP:GQ:PL 0/1:25,185:213:56:389,0,56 chrX 640468 . C T 5480.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=20.8655;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.19;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:5480,565,0 chrX 640502 . G C 5424.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.60;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:0,236:240:99:5424,582,0 chrX 640764 . A T 2466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.983;DP=117;Dels=0.01;FS=2.832;HaplotypeScore=9.7104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.135;QD=21.08;ReadPosRankSum=2.407;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2499,264,0 chrX 641753 . G A 659 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=16.47;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:72:692,72,0 chrX 641756 . A T 633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=40;Dels=0.00;FS=5.934;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.343;QD=15.82;ReadPosRankSum=2.820;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:3,37:40:72:666,72,0 chrX 641813 . T G 1567 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.87;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1600,171,0 chrX 642317 . T C 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=170;Dels=0.00;FS=5.914;HaplotypeScore=15.7563;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.383;QD=21.41;ReadPosRankSum=2.910;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:3,165:170:99:3639,396,0 chrX 644097 . G C 3394.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3394,363,0 chrX 644548 . T G 5011.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=14.0889;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.31;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5011,520,0 chrX 644706 . A T 3803.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3803,402,0 chrX 645026 . G A 4786.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.87;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4786,490,0 chrX 645066 . G A 4361.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.80;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4361,448,0 chrX 645361 . A T 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.382;QD=23.36;ReadPosRankSum=1.687;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3597,370,0 chrX 645565 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.9535;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.93;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3972,409,0 chrX 646018 . A C 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.597;QD=17.86;ReadPosRankSum=1.710;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2783,294,0 chrX 646356 . G A 3887.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=27.18;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3887,408,0 chrX 646432 . T A 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.230;QD=24.62;ReadPosRankSum=1.637;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3570,372,0 chrX 646496 . T C 3296.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3346;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3296,363,0 chrX 647196 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.72;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3009,315,0 chrX 647222 . G T 2838 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.89;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2871,297,0 chrX 648431 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=8.857;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.754;QD=21.12;ReadPosRankSum=2.335;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3612,384,0 chrX 648461 . G A 3990.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.17;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3990,421,0 chrX 649035 . G A 3866.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.01;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3866,400,0 chrX 649219 . A G 1048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=12.2714;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.808;QD=13.97;ReadPosRankSum=1.686;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1081,120,0 chrX 651274 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2618,282,0 chrX 652362 . T C 5851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=271;Dels=0.00;FS=3.466;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.655;QD=21.59;ReadPosRankSum=1.719;SB=-3.332e+03 GT:AD:DP:GQ:PL 1/1:1,270:271:99:5851,648,0 chrX 652591 . A G 1725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.277;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.927;QD=17.25;ReadPosRankSum=1.697;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:1,98:100:99:1758,192,0 chrX 653026 . T C 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=3.715;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.587;QD=18.36;ReadPosRankSum=1.649;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3117,345,0 chrX 653283 . C T 3865.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.5964;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.62;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3865,408,0 chrX 653717 . A G 4488.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.1096;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4488,475,0 chrX 653755 . T C 4499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.047;QD=24.45;ReadPosRankSum=1.713;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:4499,477,0 chrX 654612 . A T 3168 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.75;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3201,339,0 chrX 655475 . C T 4344.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.27;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4344,448,0 chrX 656567 . C T 3353.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.84;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3353,345,0 chrX 657710 . C T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.2596;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.39;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3461,366,0 chrX 657858 . A G 3810.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=16.7570;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.42;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3810,411,0 chrX 657928 . A G 4718.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.1320;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.83;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4718,493,0 chrX 658094 . G A 4209.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.63;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4209,433,0 chrX 658561 . G A 4407.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.2365;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.82;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4407,454,0 chrX 658665 . T C 695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.269;DP=176;Dels=0.00;FS=1.296;HaplotypeScore=221.1527;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=1.353;QD=3.95;ReadPosRankSum=-8.483;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:106,70:176:59:728,59,0 chrX 658912 . C T 2775 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.4423;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.51;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2808,297,0 chrX 659016 . C T 3683.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.31;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3683,387,0 chrX 659425 . T C 4255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.593;DP=191;Dels=0.00;FS=12.196;HaplotypeScore=16.5856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.162;QD=22.28;ReadPosRankSum=3.709;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:5,185:191:99:4255,462,0 chrX 659775 . C T 4772.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4772,508,0 chrX 659898 . T C 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.022;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.887;QD=22.65;ReadPosRankSum=2.139;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3783,402,0 chrX 659931 . C T 3933.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.13;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3933,406,0 chrX 660191 . C A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.44;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3610,376,0 chrX 660402 . A G 3959.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.1159;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.88;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3959,438,0 chrX 660487 . A G 4234.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.52;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4234,448,0 chrX 660546 . C T 5267.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.2255;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.51;SB=-2.991e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5267,553,0 chrX 660753 . C T 4641.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.86;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4641,484,0 chrX 660770 . C G 4278.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=22.52;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4278,454,0 chrX 660786 . G A 4107.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.9810;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.85;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4107,427,0 chrX 661047 . C T 3833.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.95;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3833,403,0 chrX 661050 . T C 3778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.061;QD=20.64;ReadPosRankSum=2.409;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:3778,411,0 chrX 661171 . T C 5166.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.59;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5166,544,0 chrX 661230 . A G 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=18.1284;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.461;QD=21.11;ReadPosRankSum=1.677;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3968,429,0 chrX 661266 . G A 4548.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=24.85;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4548,466,0 chrX 661370 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.56;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3440,352,0 chrX 661398 . A G 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.488;QD=22.09;ReadPosRankSum=1.683;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3170,336,0 chrX 661506 . C T 4740.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.9667;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.31;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4740,499,0 chrX 661545 . C G 5157.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.91;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5157,541,0 chrX 661788 . C T 5431.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.05;FS=0.000;HaplotypeScore=57.0794;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.47;SB=-3.132e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5431,559,0 chrX 661920 . A G 5252.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=3.9067;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=21.97;SB=-3.092e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5252,588,0 chrX 661926 . G A 5306.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=7.0049;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=22.58;SB=-3.178e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5306,550,0 chrX 662146 . C T 5109.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=23.44;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5109,532,0 chrX 662191 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=203;Dels=0.00;FS=7.060;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;MQRankSum=0.276;QD=19.18;ReadPosRankSum=2.425;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:2,198:203:99:3893,411,0 chrX 662193 . C A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.01;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=19.28;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3837,414,0 chrX 662204 . C A 4226.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.4562;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=20.03;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4226,445,0 chrX 662262 . T C 6076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=276;Dels=0.00;FS=4.281;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-0.427;QD=22.01;ReadPosRankSum=1.720;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:1,275:276:99:6076,640,0 chrX 662282 . C T 5743.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.17;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,256:259:99:5743,610,0 chrX 662322 . G A 4156.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.0939;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.88;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4156,439,0 chrX 662418 . C G 3990.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.1320;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.17;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3990,456,0 chrX 662679 . C T 3018 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.86;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3051,321,0 chrX 662769 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.8671;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.27;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2755,288,0 chrX 663013 . A C 4167.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.2438;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.77;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4167,465,0 chrX 663082 . A G 3601.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.4999;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=19.68;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3601,381,0 chrX 663083 . A G 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=184;Dels=0.00;FS=11.112;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=-1.923;QD=19.08;ReadPosRankSum=2.396;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:2,180:184:99:3511,378,0 chrX 663098 . A G 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=218;Dels=0.00;FS=5.903;HaplotypeScore=8.1226;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-1.351;QD=16.59;ReadPosRankSum=1.653;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:3616,393,0 chrX 663511 . T C 3525.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.6807;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3525,393,0 chrX 663590 . A C 2775 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2644;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.86;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2808,306,0 chrX 663968 . T A 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.553;QD=19.43;ReadPosRankSum=3.362;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:4,90:94:99:1859,210,0 chrX 664824 . A G 6585.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=17.6524;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-4.023e+03 GT:AD:DP:GQ:PL 1/1:0,301:302:99:6585,694,0 chrX 666074 . C G 3718.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.40;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3718,411,0 chrX 669334 . T C 1671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=70;Dels=0.00;FS=3.266;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.336;QD=23.87;ReadPosRankSum=1.584;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1704,183,0 chrX 669427 . G A 2143 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2176,231,0 chrX 671070 . G A 4019.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.2841;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4019,412,0 chrX 673602 . G A 6080.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.42;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:6080,625,0 chrX 673954 . A G 4523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=182;Dels=0.00;FS=9.400;HaplotypeScore=9.7452;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=2.022;QD=24.85;ReadPosRankSum=2.950;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:3,177:182:99:4523,475,0 chrX 675076 . T C 2929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.571;QD=22.71;ReadPosRankSum=1.705;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2962,315,0 chrX 675286 . T A 2786 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2819,300,0 chrX 684046 . T C 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.962;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.777;QD=19.25;ReadPosRankSum=1.650;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2516,273,0 chrX 684047 . G A 2458 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.20;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2491,261,0 chrX 684244 . G A 2732 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=24.18;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2765,285,0 chrX 684758 . G C 4472.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.8265;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:4472,480,0 chrX 685154 . A G 3191 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.33;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3224,342,0 chrX 685208 . C T 2991 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.47;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:3024,312,0 chrX 685862 . T C 3958.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.43;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3958,429,0 chrX 685982 . T C 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.2821;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.230;QD=24.12;ReadPosRankSum=1.690;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,165:169:99:4076,429,0 chrX 686433 . C A 2113 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.76;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2146,234,0 chrX 686498 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.66;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3308,340,0 chrX 686551 . C G 3730.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.9478;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.76;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3730,396,0 chrX 686736 . A G 3909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=167;Dels=0.00;FS=3.014;HaplotypeScore=15.5812;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.659;QD=23.41;ReadPosRankSum=2.420;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3909,417,0 chrX 686894 . A C 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=127;Dels=0.00;FS=3.962;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.832;QD=24.66;ReadPosRankSum=1.623;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3165,339,0 chrX 694041 . T C 3694.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.9242;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.99;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3694,402,0 chrX 697486 . T C 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.197;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.7943;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.055;QD=22.54;ReadPosRankSum=1.419;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3516,360,0 chrX 697654 . G A 3449.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3449,355,0 chrX 698458 . C T 4231.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4231,447,0 chrX 699021 . T C 5540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.740;DP=238;Dels=0.00;FS=11.944;HaplotypeScore=18.3860;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.542;QD=23.28;ReadPosRankSum=3.787;SB=-2.930e+03 GT:AD:DP:GQ:PL 1/1:5,230:238:99:5540,600,0 chrX 699851 . G A 6107.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=10.6588;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:6107,628,0 chrX 701028 . A G 4569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=245;Dels=0.00;FS=2.969;HaplotypeScore=15.2980;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.210;QD=18.65;ReadPosRankSum=2.429;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:2,238:245:99:4569,498,0 chrX 701313 . A G 4663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=196;Dels=0.00;FS=6.983;HaplotypeScore=13.7971;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.021;QD=23.79;ReadPosRankSum=2.425;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4663,490,0 chrX 701781 . T C 117.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.967;DP=75;Dels=0.00;FS=76.489;HaplotypeScore=3.3052;MLEAC=1;MLEAF=0.500;MQ=48.75;MQ0=0;MQRankSum=-2.124;QD=1.56;ReadPosRankSum=-4.437;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,15:75:99:147,0,338 chrX 701784 . G A 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.709;DP=79;Dels=0.00;FS=70.451;HaplotypeScore=3.3052;MLEAC=1;MLEAF=0.500;MQ=49.38;MQ0=0;MQRankSum=-3.801;QD=0.54;ReadPosRankSum=-4.542;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,13:79:73:73,0,528 chrX 701827 . C T 1122 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1085;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;QD=16.03;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1155,117,0 chrX 701912 . G A 450 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=14.52;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,28:31:51:483,51,0 chrX 702426 . A G 1102 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.097;DP=95;Dels=0.00;FS=11.083;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=23.40;MQ0=39;MQRankSum=-2.406;QD=11.60;ReadPosRankSum=1.965;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1135,123,0 chrX 702456 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=26;Dels=0.00;FS=3.979;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=12.59;MQ0=20;MQRankSum=-0.731;QD=0.84;ReadPosRankSum=0.731;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,24:26:6:53,6,0 chrX 702597 . C A 5448.01 filter AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=53;QD=19.96;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:5448,580,0 chrX 703116 . A T 1483 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.77;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1516,156,0 chrX 703339 . A G 1648 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3550;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.86;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1681,189,0 chrX 703470 . G A 3419.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.7081;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.78;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3419,357,0 chrX 703501 . A T 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.991;DP=166;Dels=0.00;FS=9.490;HaplotypeScore=14.3476;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.126;QD=20.75;ReadPosRankSum=2.316;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3445,366,0 chrX 703598 . C T 9117.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=14.0744;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=27.05;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,337:337:99:9117,937,0 chrX 703629 . A G 7023.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.30;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,285:289:99:7023,769,0 chrX 703809 . C T 8807.01 filter AC=2;AF=1.00;AN=2;DP=363;Dels=0.00;FS=0.000;HaplotypeScore=20.7929;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.26;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,363:363:99:8807,913,0 chrX 703858 . G A 6567.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=16.9255;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.41;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:6567,682,0 chrX 703893 . C T 4924.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=18.9171;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.26;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4924,520,0 chrX 704028 . A G 5124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=222;Dels=0.00;FS=4.266;HaplotypeScore=18.3298;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.087;QD=23.08;ReadPosRankSum=1.716;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:1,218:222:99:5124,576,0 chrX 704179 . A C 6750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.395;DP=290;Dels=0.00;FS=14.323;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=0.699;QD=23.28;ReadPosRankSum=3.341;SB=-3.208e+03 GT:AD:DP:GQ:PL 1/1:4,286:290:99:6750,744,0 chrX 704310 . C T 5189.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=16.2746;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.06;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5189,532,0 chrX 704425 . G A 3844.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.02;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3844,405,0 chrX 704426 . C A 3941.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.07;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3941,409,0 chrX 704535 . G A 2894 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.8378;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.79;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2927,306,0 chrX 704795 . A T 5577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=220;Dels=0.00;FS=4.130;HaplotypeScore=11.5373;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-1.590;QD=25.35;ReadPosRankSum=1.716;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5577,571,0 chrX 704982 . C T 4398.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=7.3206;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=18.71;SB=-2.988e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:4398,492,0 chrX 704998 . C T 4414.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.03;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4414,460,0 chrX 705300 . C T 4110.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.3885;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.63;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4110,421,0 chrX 705423 . A G 3906.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.9563;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.82;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3906,426,0 chrX 705450 . C T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.84;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3669,379,0 chrX 705542 . A G 2516 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=19.66;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2549,273,0 chrX 705581 . A G 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=1.433;QD=19.97;ReadPosRankSum=2.368;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:2,120:124:99:2509,270,0 chrX 705586 . C A 2633 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.50;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2666,279,0 chrX 705848 . G C 3366.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=23.05;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3366,366,0 chrX 705865 . C T 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.4398;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-1.532;QD=22.51;ReadPosRankSum=-0.155;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3557,373,0 chrX 705917 . A G 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.2461;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-0.745;QD=16.83;ReadPosRankSum=1.693;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3079,336,0 chrX 705920 . T C 3080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=188;Dels=0.00;FS=10.443;HaplotypeScore=6.3441;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-1.535;QD=16.38;ReadPosRankSum=2.854;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:3,183:188:99:3113,336,0 chrX 706135 . G A 4436.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=15.1515;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.72;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4436,483,0 chrX 706199 . C T 5605.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=13.5244;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.65;SB=-2.945e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5605,583,0 chrX 706926 . G C 3023 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3056,330,0 chrX 707018 . G A 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.117;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.499;QD=22.03;ReadPosRankSum=1.233;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2655,266,0 chrX 707043 . C A 2347 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.34;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2380,246,0 chrX 707089 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.44;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3348,345,0 chrX 707206 . C T 3769.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.80;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3769,396,0 chrX 707260 . G A 2967 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.32;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3000,312,0 chrX 709165 . A G 1615.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.363;DP=373;Dels=0.00;FS=5.331;HaplotypeScore=15.3930;MLEAC=1;MLEAF=0.500;MQ=45.97;MQ0=0;MQRankSum=-7.196;QD=4.33;ReadPosRankSum=-1.520;SB=-1.418e+03 GT:AD:DP:GQ:PL 0/1:217,154:373:99:1645,0,2599 chrX 709169 . T G 1357.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.651;DP=367;Dels=0.00;FS=4.760;HaplotypeScore=14.8538;MLEAC=1;MLEAF=0.500;MQ=46.03;MQ0=0;MQRankSum=-8.242;QD=3.70;ReadPosRankSum=-3.535;SB=-1.252e+03 GT:AD:DP:GQ:PL 0/1:223,141:367:99:1387,0,2784 chrX 709172 . G A 1304.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.191;DP=368;Dels=0.00;FS=5.514;HaplotypeScore=12.3514;MLEAC=1;MLEAF=0.500;MQ=46.16;MQ0=0;MQRankSum=-9.528;QD=3.54;ReadPosRankSum=-4.744;SB=-1.256e+03 GT:AD:DP:GQ:PL 0/1:229,138:368:99:1334,0,2897 chrX 709177 . A G 907.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.503;DP=369;Dels=0.00;FS=7.423;HaplotypeScore=13.3806;MLEAC=1;MLEAF=0.500;MQ=46.68;MQ0=0;MQRankSum=-9.657;QD=2.46;ReadPosRankSum=-4.917;SB=-9.580e+02 GT:AD:DP:GQ:PL 0/1:247,120:368:99:937,0,3460 chrX 709185 . T C 266.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.264;DP=338;Dels=0.00;FS=2.920;HaplotypeScore=13.9313;MLEAC=1;MLEAF=0.500;MQ=49.82;MQ0=0;MQRankSum=-11.329;QD=0.79;ReadPosRankSum=-3.251;SB=-5.200e+02 GT:AD:DP:GQ:PL 0/1:265,73:338:99:296,0,4139 chrX 709186 . G A 244.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.783;DP=339;Dels=0.00;FS=2.920;HaplotypeScore=13.8766;MLEAC=1;MLEAF=0.500;MQ=49.93;MQ0=0;MQRankSum=-10.543;QD=0.72;ReadPosRankSum=-3.779;SB=-5.020e+02 GT:AD:DP:GQ:PL 0/1:265,73:339:99:274,0,4025 chrX 709188 . T A 234.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;DP=339;Dels=0.00;FS=2.930;HaplotypeScore=13.8766;MLEAC=1;MLEAF=0.500;MQ=50.42;MQ0=0;MQRankSum=-10.984;QD=0.69;ReadPosRankSum=-4.980;SB=-5.040e+02 GT:AD:DP:GQ:PL 0/1:266,73:339:99:264,0,4468 chrX 710013 . A G 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=184;Dels=0.00;FS=3.656;HaplotypeScore=16.6348;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.617;QD=22.60;ReadPosRankSum=1.675;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,180:184:99:4158,465,0 chrX 710097 . T C 4389.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4389,471,0 chrX 710469 . G A 3978.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=278.7981;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=23.54;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3978,415,0 chrX 710937 . T C 4500.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.1518;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.59;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4500,492,0 chrX 713150 . G A 5042.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=229;Dels=0.00;FS=3.135;HaplotypeScore=14.2967;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=13;MQRankSum=0.245;QD=22.02;ReadPosRankSum=-0.016;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:1,224:229:99:5042,532,0 chrX 713753 . G A 6483.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=17.3860;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.13;SB=-3.182e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:6483,664,0 chrX 714727 . G T 10035.01 filter AC=2;AF=1.00;AN=2;DP=410;Dels=0.00;FS=0.000;HaplotypeScore=25.1935;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=24.48;SB=-5.490e+03 GT:AD:DP:GQ:PL 1/1:0,410:410:99:10035,1045,0 chrX 714763 . T G 902.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.953;DP=353;Dels=0.00;FS=637.131;HaplotypeScore=23.1586;MLEAC=1;MLEAF=0.500;MQ=51.92;MQ0=0;MQRankSum=9.610;QD=2.56;ReadPosRankSum=-8.476;SB=0.048 GT:AD:DP:GQ:PL 0/1:240,113:353:99:932,0,4062 chrX 715050 . G A 1926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.332;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=160.1049;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=1;MQRankSum=0.733;QD=18.34;ReadPosRankSum=-0.966;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1959,210,0 chrX 715060 . A G 1324 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.09;MQ0=1;QD=16.76;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1357,150,0 chrX 715356 . T A 190.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=9.9535;MLEAC=2;MLEAF=1.00;MQ=33.55;MQ0=0;MQRankSum=-1.476;QD=3.52;ReadPosRankSum=1.668;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:24:223,24,0 chrX 715357 . C A 197.03 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=9.9535;MLEAC=2;MLEAF=1.00;MQ=33.61;MQ0=0;QD=3.58;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:24:230,24,0 chrX 716647 . C T 3358.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.65;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3358,354,0 chrX 716913 . A G 4382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=201;Dels=0.00;FS=4.881;HaplotypeScore=11.7130;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.260;QD=21.80;ReadPosRankSum=1.697;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4382,495,0 chrX 717717 . G A 4822.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.87;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4822,499,0 chrX 718417 . C A 3964.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=23.05;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3964,406,0 chrX 718433 . G A 3875.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.4236;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.14;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,170:175:99:3875,408,0 chrX 718919 . C A 4020.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.6456;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.79;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4020,412,0 chrX 719114 . C T 4015.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.2060;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=19.59;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4015,426,0 chrX 719596 . T G 3977.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.01;FS=0.000;HaplotypeScore=5.9038;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.71;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3977,429,0 chrX 719602 . A G 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.2409;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.161;QD=19.50;ReadPosRankSum=1.696;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:1,193:197:99:3841,423,0 chrX 719662 . C T 2213 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=15.81;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2246,243,0 chrX 719842 . G A 4205.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.4481;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=24.03;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4205,427,0 chrX 720754 . T G 5467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.590;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=16.3093;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.324;QD=24.96;ReadPosRankSum=0.293;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:5467,591,0 chrX 721302 . G A 2496 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2529,255,0 chrX 722194 . A T 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.8936;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.056;QD=23.45;ReadPosRankSum=2.353;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3588,375,0 chrX 722324 . A G 3601.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.1751;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.08;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3601,387,0 chrX 722676 . A C 4398.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.3044;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.27;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4398,466,0 chrX 723691 . A G 5198.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.73;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:5198,561,0 chrX 723930 . C T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=16.7056;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.57;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,188:192:99:4334,462,0 chrX 724397 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3708,379,0 chrX 724819 . C T 2926 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2959,306,0 chrX 725020 . A G 3856.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3856,408,0 chrX 726099 . T C 5499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=230;Dels=0.00;FS=6.963;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.713;QD=23.91;ReadPosRankSum=2.417;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:5499,586,0 chrX 727023 . G C 4252.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.3321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,181:186:99:4252,459,0 chrX 727128 . T A 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.524;QD=24.63;ReadPosRankSum=1.706;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3276,339,0 chrX 727330 . C G 260.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.228;DP=222;Dels=0.00;FS=13.140;HaplotypeScore=14.5844;MLEAC=1;MLEAF=0.500;MQ=55.37;MQ0=0;MQRankSum=-9.776;QD=1.17;ReadPosRankSum=-4.354;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:181,39:222:99:290,0,3777 chrX 727369 . T C 2286.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;DP=321;Dels=0.00;FS=1.912;HaplotypeScore=58.6394;MLEAC=1;MLEAF=0.500;MQ=49.15;MQ0=0;MQRankSum=-15.129;QD=7.12;ReadPosRankSum=1.956;SB=-1.136e+03 GT:AD:DP:GQ:PL 0/1:189,131:321:99:2316,0,3561 chrX 727432 . A G 1981.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.579;DP=372;Dels=0.00;FS=0.000;HaplotypeScore=55.4157;MLEAC=1;MLEAF=0.500;MQ=48.23;MQ0=0;MQRankSum=-14.357;QD=5.33;ReadPosRankSum=1.157;SB=-1.216e+03 GT:AD:DP:GQ:PL 0/1:235,134:372:99:2011,0,4643 chrX 727566 . T C 184.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.656;DP=324;Dels=0.00;FS=191.721;HaplotypeScore=31.1355;MLEAC=1;MLEAF=0.500;MQ=54.14;MQ0=0;MQRankSum=-12.810;QD=0.57;ReadPosRankSum=-0.484;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:249,75:324:99:214,0,5153 chrX 727611 . C T 391.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.132;DP=355;Dels=0.00;FS=223.674;HaplotypeScore=18.3468;MLEAC=1;MLEAF=0.500;MQ=54.20;MQ0=0;MQRankSum=-13.256;QD=1.10;ReadPosRankSum=2.895;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:268,83:355:99:421,0,5786 chrX 727614 . C T 270.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;DP=358;Dels=0.00;FS=182.644;HaplotypeScore=21.4468;MLEAC=1;MLEAF=0.500;MQ=54.26;MQ0=0;MQRankSum=-12.880;QD=0.75;ReadPosRankSum=1.459;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:272,86:358:99:300,0,5777 chrX 727617 . T C 206.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.077;DP=356;Dels=0.00;FS=254.467;HaplotypeScore=22.1807;MLEAC=1;MLEAF=0.500;MQ=54.44;MQ0=0;MQRankSum=-13.423;QD=0.58;ReadPosRankSum=2.239;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:278,77:356:99:236,0,5672 chrX 727620 . G A 270.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.611;DP=356;Dels=0.00;FS=262.811;HaplotypeScore=26.9128;MLEAC=1;MLEAF=0.500;MQ=54.44;MQ0=0;MQRankSum=-13.289;QD=0.76;ReadPosRankSum=0.787;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:278,78:356:99:300,0,5908 chrX 727626 . T C 180.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;DP=336;Dels=0.00;FS=232.082;HaplotypeScore=14.1963;MLEAC=1;MLEAF=0.500;MQ=54.88;MQ0=0;MQRankSum=-12.712;QD=0.54;ReadPosRankSum=-0.236;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:267,68:336:99:210,0,5613 chrX 729142 . T C 10066.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.623;DP=685;Dels=0.00;FS=10.665;HaplotypeScore=47.6154;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=141;MQRankSum=-1.840;QD=14.69;ReadPosRankSum=3.761;SB=-4.629e+03 GT:AD:DP:GQ:PL 1/1:5,679:685:99:10066,1128,0 chrX 731089 . T A 314 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=11.08;MQ0=55;QD=3.78;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:39:347,39,0 chrX 738075 . G T 3609.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.066;DP=167;Dels=0.00;FS=3.294;HaplotypeScore=6.2954;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=7;MQRankSum=1.579;QD=21.61;ReadPosRankSum=1.666;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3609,365,0 chrX 741671 . T A 311 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.88;MQ0=55;MQRankSum=-2.367;QD=3.70;ReadPosRankSum=2.281;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:2,82:84:39:344,39,0 chrX 743424 . T A 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.3792;MLEAC=1;MLEAF=0.500;MQ=20.62;MQ0=109;MQRankSum=-2.652;QD=0.14;ReadPosRankSum=2.924;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:154,27:181:55:55,0,1162 chrX 743425 . C G 137.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.9566;MLEAC=1;MLEAF=0.500;MQ=20.25;MQ0=114;MQRankSum=-4.088;QD=0.73;ReadPosRankSum=1.363;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,87:188:99:167,0,1055 chrX 744072 . A G 132.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.197;DP=109;Dels=0.00;FS=18.543;HaplotypeScore=8.8657;MLEAC=1;MLEAF=0.500;MQ=21.58;MQ0=27;MQRankSum=-1.819;QD=1.21;ReadPosRankSum=-0.075;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:77,32:109:99:162,0,1026 chrX 744173 . A G 63.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;DP=181;Dels=0.00;FS=26.795;HaplotypeScore=1.9891;MLEAC=1;MLEAF=0.500;MQ=12.97;MQ0=84;MQRankSum=4.670;QD=0.35;ReadPosRankSum=3.543;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:137,41:181:93:93,0,1130 chrX 744175 . G A 65.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.789;DP=183;Dels=0.00;FS=26.822;HaplotypeScore=1.9891;MLEAC=1;MLEAF=0.500;MQ=12.94;MQ0=84;MQRankSum=4.715;QD=0.36;ReadPosRankSum=2.989;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,41:183:95:95,0,1129 chrX 744182 . A T 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793;DP=189;Dels=0.00;FS=29.997;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=12.81;MQ0=88;MQRankSum=4.649;QD=0.30;ReadPosRankSum=0.899;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:155,34:189:87:87,0,1128 chrX 744198 . C T 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;DP=187;Dels=0.00;FS=37.662;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=12.96;MQ0=81;MQRankSum=4.683;QD=0.25;ReadPosRankSum=-1.461;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:162,25:187:76:76,0,1032 chrX 744353 . T C 382.09 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.722;DP=154;Dels=0.00;FS=9.190;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=11.35;MQ0=85;MQRankSum=-0.801;QD=2.48;ReadPosRankSum=-2.778;SB=-2.271e+02 GT:AD:DP:GQ:PL 0/1:30,122:154:14:412,0,14 chrX 744362 . T C 372 filter AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=9.64;MQ0=98;QD=2.38;SB=-4.401e+01 GT:AD:DP:GQ:PL 1/1:0,155:156:48:405,48,0 chrX 744402 . A C 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=7.14;MQ0=110;MQRankSum=-2.272;QD=0.26;ReadPosRankSum=0.722;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,109:144:44:67,0,44 chrX 744458 . T C 212 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.575;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.20;MQ0=136;MQRankSum=1.575;QD=1.18;ReadPosRankSum=0.787;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:6,173:180:30:245,30,0 chrX 744930 . A G 381.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.637;DP=453;Dels=0.00;FS=0.000;HaplotypeScore=30.5036;MLEAC=1;MLEAF=0.500;MQ=15.54;MQ0=253;MQRankSum=-0.626;QD=0.84;ReadPosRankSum=0.650;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:368,78:453:99:411,0,2016 chrX 745032 . A G 1798.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;DP=724;Dels=0.00;FS=30.960;HaplotypeScore=63.5938;MLEAC=1;MLEAF=0.500;MQ=16.94;MQ0=275;MQRankSum=-3.391;QD=2.48;ReadPosRankSum=2.607;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:375,340:724:99:1828,0,1794 chrX 745108 . C G 126.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;DP=1000;DS;Dels=0.00;FS=115.373;HaplotypeScore=264.3901;MLEAC=1;MLEAF=0.500;MQ=28.36;MQ0=176;MQRankSum=-7.568;QD=0.13;ReadPosRankSum=3.355;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:812,156:1000:99:156,0,10181 chrX 745109 . G A 544.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=16.185;DP=1000;DS;Dels=0.00;FS=152.006;HaplotypeScore=265.7050;MLEAC=1;MLEAF=0.500;MQ=28.19;MQ0=174;MQRankSum=-9.691;QD=0.54;ReadPosRankSum=5.340;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:754,242:1000:99:574,0,9805 chrX 745114 . A C 566.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.625;DP=995;DS;Dels=0.00;FS=192.630;HaplotypeScore=759.1731;MLEAC=1;MLEAF=0.500;MQ=27.82;MQ0=185;MQRankSum=-9.263;QD=0.57;ReadPosRankSum=3.981;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:720,263:995:99:596,0,10564 chrX 745121 . G C 6795.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.758;DP=1000;DS;Dels=0.00;FS=16.900;HaplotypeScore=412.6387;MLEAC=1;MLEAF=0.500;MQ=27.77;MQ0=177;MQRankSum=-4.331;QD=6.80;ReadPosRankSum=1.835;SB=-6.790e+02 GT:AD:DP:GQ:PL 0/1:450,542:1000:99:6795,0,4116 chrX 745436 . T C 462.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;DP=580;DS;Dels=0.00;FS=26.709;HaplotypeScore=679.4220;MLEAC=1;MLEAF=0.500;MQ=20.74;MQ0=145;MQRankSum=1.518;QD=0.80;ReadPosRankSum=0.605;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:498,76:580:99:492,0,2242 chrX 745451 . G A 2438.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.581;DP=654;Dels=0.00;FS=82.776;HaplotypeScore=308.5977;MLEAC=1;MLEAF=0.500;MQ=22.50;MQ0=103;MQRankSum=11.358;QD=3.73;ReadPosRankSum=-3.922;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:400,253:653:99:2468,0,3236 chrX 745453 . A G 264.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.829;DP=684;Dels=0.00;FS=50.803;HaplotypeScore=300.2612;MLEAC=1;MLEAF=0.500;MQ=22.98;MQ0=96;MQRankSum=0.128;QD=0.39;ReadPosRankSum=0.200;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:584,95:682:99:294,0,5814 chrX 745461 . A T 3789.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DP=820;Dels=0.00;FS=75.401;HaplotypeScore=194.3282;MLEAC=1;MLEAF=0.500;MQ=24.75;MQ0=87;MQRankSum=9.643;QD=4.62;ReadPosRankSum=-0.271;SB=-2.530e+02 GT:AD:DP:GQ:PL 0/1:469,349:820:99:3789,0,4252 chrX 745488 . G A 5666.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=14.050;DP=998;DS;Dels=0.00;FS=23.614;HaplotypeScore=673.1737;MLEAC=1;MLEAF=0.500;MQ=29.23;MQ0=40;MQRankSum=-6.320;QD=5.68;ReadPosRankSum=4.026;SB=-9.280e+02 GT:AD:DP:GQ:PL 0/1:505,490:997:99:5666,0,6502 chrX 745492 . A G 5619.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-17.655;DP=1000;DS;Dels=0.00;FS=31.654;HaplotypeScore=918.0638;MLEAC=1;MLEAF=0.500;MQ=29.75;MQ0=30;MQRankSum=-4.324;QD=5.62;ReadPosRankSum=4.251;SB=-9.280e+02 GT:AD:DP:GQ:PL 0/1:513,483:998:99:5619,0,6835 chrX 745495 . G A 4616.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=16.031;DP=1000;DS;Dels=0.01;FS=9.177;HaplotypeScore=1126.9806;MLEAC=1;MLEAF=0.500;MQ=30.06;MQ0=29;MQRankSum=7.048;QD=4.62;ReadPosRankSum=4.343;SB=-5.480e+02 GT:AD:DP:GQ:PL 0/1:646,345:995:99:4616,0,7736 chrX 745504 . A G 6855.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.673;DP=944;DS;Dels=0.00;FS=35.690;HaplotypeScore=741.0251;MLEAC=1;MLEAF=0.500;MQ=30.21;MQ0=24;MQRankSum=3.941;QD=7.26;ReadPosRankSum=0.583;SB=-6.930e+02 GT:AD:DP:GQ:PL 0/1:394,543:943:99:6855,0,3945 chrX 745529 . G A 4813.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.457;DP=966;DS;Dels=0.00;FS=18.164;HaplotypeScore=456.6876;MLEAC=1;MLEAF=0.500;MQ=30.10;MQ0=16;MQRankSum=-1.575;QD=4.98;ReadPosRankSum=4.399;SB=-1.138e+03 GT:AD:DP:GQ:PL 0/1:560,403:966:99:4813,0,6106 chrX 745553 . G A 1079.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.904;DP=757;DS;Dels=0.01;FS=90.784;HaplotypeScore=245.9307;MLEAC=1;MLEAF=0.500;MQ=30.80;MQ0=9;MQRankSum=7.590;QD=1.43;ReadPosRankSum=1.662;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:512,240:752:99:1109,0,6571 chrX 745571 . G A 3081.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.184;DP=567;DS;Dels=0.00;FS=0.928;HaplotypeScore=196.0523;MLEAC=1;MLEAF=0.500;MQ=28.89;MQ0=5;MQRankSum=0.490;QD=5.43;ReadPosRankSum=0.559;SB=-8.260e+02 GT:AD:DP:GQ:PL 0/1:174,254:567:99:3111,0,1442 chrX 745593 . C A,G 2776.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.977;DP=382;DS;Dels=0.00;FS=5.473;HaplotypeScore=91.9165;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.14;MQ0=1;MQRankSum=1.114;QD=7.27;ReadPosRankSum=0.086;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/2:1,247,134:382:99:2836,1751,1622,1085,0,860 chrX 745597 . A G,T 2342.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=4.794;DP=302;DS;Dels=0.02;FS=2.697;HaplotypeScore=79.2985;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.92;MQ0=1;MQRankSum=-1.416;QD=7.75;ReadPosRankSum=4.770;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/2:9,24,264:297:99:2402,1964,1910,438,0,195 chrX 745598 . A G 1785.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.552;DP=293;DS;Dels=0.02;FS=117.542;HaplotypeScore=109.4835;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=1;MQRankSum=-0.966;QD=6.09;ReadPosRankSum=3.326;SB=-2.866e+02 GT:AD:DP:GQ:PL 1/1:16,263:288:2:1815,2,0 chrX 745602 . A G 505.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.048;DP=293;DS;Dels=0.00;FS=84.289;HaplotypeScore=105.8278;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=1;MQRankSum=-1.371;QD=1.72;ReadPosRankSum=7.799;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:126,167:293:99:535,0,1333 chrX 745609 . T C 847.03 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.008;DP=185;DS;Dels=0.01;FS=62.312;HaplotypeScore=59.6055;MLEAC=1;MLEAF=0.500;MQ=24.24;MQ0=1;MQRankSum=1.899;QD=4.58;ReadPosRankSum=1.441;SB=-9.104e+01 GT:AD:DP:GQ:PL 0/1:12,163:184:19:877,0,19 chrX 745646 . A G 114.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.543;DP=109;Dels=0.01;FS=5.494;HaplotypeScore=161.5561;MLEAC=1;MLEAF=0.500;MQ=22.11;MQ0=1;MQRankSum=2.611;QD=1.05;ReadPosRankSum=-0.702;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,33:108:99:144,0,123 chrX 745647 . G A 118.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.061;DP=112;Dels=0.00;FS=2.571;HaplotypeScore=180.7164;MLEAC=1;MLEAF=0.500;MQ=22.08;MQ0=1;MQRankSum=2.397;QD=1.05;ReadPosRankSum=-0.836;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,33:112:99:148,0,126 chrXI 28 . A C 153.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;DP=96;Dels=0.02;FS=18.036;HaplotypeScore=117.1027;MLEAC=1;MLEAF=0.500;MQ=22.00;MQ0=7;MQRankSum=1.686;QD=1.59;ReadPosRankSum=2.882;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:69,25:94:99:183,0,165 chrXI 78 . C A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.634;DP=270;Dels=0.01;FS=0.000;HaplotypeScore=607.6009;MLEAC=1;MLEAF=0.500;MQ=23.44;MQ0=0;MQRankSum=-2.970;QD=0.05;ReadPosRankSum=2.479;SB=-6.793e-03 GT:AD:DP:GQ:PL 0/1:143,123:266:39:42,0,39 chrXI 100 . C A 1034.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.402;DP=347;Dels=0.00;FS=0.000;HaplotypeScore=245.9815;MLEAC=1;MLEAF=0.500;MQ=25.31;MQ0=3;MQRankSum=4.078;QD=2.98;ReadPosRankSum=2.053;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:140,142:346:99:1064,0,138 chrXI 155 . C T 296.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.204;DP=184;Dels=0.00;FS=37.732;HaplotypeScore=103.4514;MLEAC=1;MLEAF=0.500;MQ=28.68;MQ0=9;MQRankSum=3.046;QD=1.61;ReadPosRankSum=-1.985;SB=-1.280e+02 GT:AD:DP:GQ:PL 0/1:21,163:184:75:326,0,75 chrXI 157 . C T 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.290;DP=184;Dels=0.00;FS=6.155;HaplotypeScore=104.4436;MLEAC=1;MLEAF=0.500;MQ=28.68;MQ0=9;MQRankSum=6.728;QD=0.27;ReadPosRankSum=2.369;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:107,77:184:79:79,0,309 chrXI 160 . C T 1540 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=151;Dels=0.00;FS=34.990;HaplotypeScore=106.1354;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=9;MQRankSum=3.425;QD=10.20;ReadPosRankSum=-1.022;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:21,130:151:70:1573,70,0 chrXI 179 . C A 438 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=83;Dels=0.00;FS=18.188;HaplotypeScore=14.3354;MLEAC=2;MLEAF=1.00;MQ=22.72;MQ0=8;MQRankSum=-1.120;QD=5.28;ReadPosRankSum=2.558;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:4,79:83:34:471,34,0 chrXI 237 . C A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.64;SB=-2.374e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:55,6,0 chrXI 239 . T C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.067;DP=9;Dels=0.00;FS=6.532;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.067;QD=2.42;ReadPosRankSum=1.666;SB=1.75 GT:AD:DP:GQ:PL 1/1:2,7:9:6:53,6,0 chrXI 243 . T C 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.22;SB=-2.871e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:6:57,6,0 chrXI 246 . T A 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=9;Dels=0.00;FS=15.563;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;MQRankSum=0.067;QD=3.09;ReadPosRankSum=-0.067;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:2,7:9:6:59,6,0 chrXI 278 . A G 1435.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.161;DP=404;Dels=0.00;FS=10.558;HaplotypeScore=47.7632;MLEAC=1;MLEAF=0.500;MQ=23.93;MQ0=17;MQRankSum=4.083;QD=3.55;ReadPosRankSum=5.280;SB=-1.540e+02 GT:AD:DP:GQ:PL 0/1:131,265:404:99:1465,0,350 chrXI 324 . T A 355.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.786;DP=447;Dels=0.00;FS=138.548;HaplotypeScore=58.6875;MLEAC=1;MLEAF=0.500;MQ=23.91;MQ0=31;MQRankSum=5.219;QD=0.79;ReadPosRankSum=-7.738;SB=-2.340e+02 GT:AD:DP:GQ:PL 0/1:387,60:447:99:385,0,1916 chrXI 347 . A G 142.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;DP=370;Dels=0.00;FS=157.693;HaplotypeScore=59.8430;MLEAC=1;MLEAF=0.500;MQ=23.14;MQ0=26;MQRankSum=3.503;QD=0.38;ReadPosRankSum=-2.036;SB=-3.786e-03 GT:AD:DP:GQ:PL 0/1:344,26:370:99:172,0,1442 chrXI 388 . C A 102.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.933;DP=32;Dels=0.03;FS=2.716;HaplotypeScore=27.9730;MLEAC=1;MLEAF=0.500;MQ=23.29;MQ0=4;MQRankSum=0.778;QD=3.19;ReadPosRankSum=-0.527;SB=-6.524e-03 GT:AD:DP:GQ:PL 0/1:13,18:31:54:132,0,54 chrXI 419 . C T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DP=12;Dels=0.00;FS=3.282;HaplotypeScore=13.3554;MLEAC=1;MLEAF=0.500;MQ=23.37;MQ0=0;MQRankSum=0.537;QD=0.94;ReadPosRankSum=0.967;SB=0.048 GT:AD:DP:GQ:PL 0/1:10,2:12:41:41,0,41 chrXI 421 . C A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.123;DP=15;Dels=0.00;FS=2.808;HaplotypeScore=17.0686;MLEAC=1;MLEAF=0.500;MQ=24.60;MQ0=0;MQRankSum=1.104;QD=0.82;ReadPosRankSum=1.444;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,2:15:42:42,0,90 chrXI 436 . G T 147.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.400;DP=31;Dels=0.00;FS=4.269;HaplotypeScore=30.0059;MLEAC=1;MLEAF=0.500;MQ=25.18;MQ0=1;MQRankSum=2.321;QD=4.74;ReadPosRankSum=-2.181;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:23,8:31:99:177,0,207 chrXI 438 . T C 457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=31;Dels=0.00;FS=4.771;HaplotypeScore=28.4490;MLEAC=2;MLEAF=1.00;MQ=25.64;MQ0=1;MQRankSum=-1.502;QD=14.74;ReadPosRankSum=1.617;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:54:490,54,0 chrXI 498 . T A 1119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;DP=118;Dels=0.00;FS=234.301;HaplotypeScore=96.8336;MLEAC=1;MLEAF=0.500;MQ=26.05;MQ0=8;MQRankSum=4.254;QD=9.48;ReadPosRankSum=2.254;SB=-2.982e+00 GT:AD:DP:GQ:PL 0/1:60,58:118:99:1149,0,383 chrXI 509 . G T 100.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;DP=114;Dels=0.04;FS=62.995;HaplotypeScore=64.5832;MLEAC=1;MLEAF=0.500;MQ=26.06;MQ0=8;MQRankSum=0.214;QD=0.88;ReadPosRankSum=-2.541;SB=1.75 GT:AD:DP:GQ:PL 0/1:57,12:110:99:130,0,1213 chrXI 581 . A C 487 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=21.88;MQ0=3;QD=7.16;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,66:68:57:520,57,0 chrXI 595 . A G 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.590;DP=100;Dels=0.00;FS=25.766;HaplotypeScore=28.2103;MLEAC=1;MLEAF=0.500;MQ=23.97;MQ0=3;MQRankSum=-0.309;QD=0.57;ReadPosRankSum=-2.165;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,52:100:87:87,0,640 chrXI 634 . A G 262.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.800;DP=123;Dels=0.00;FS=63.684;HaplotypeScore=52.0591;MLEAC=1;MLEAF=0.500;MQ=25.84;MQ0=1;MQRankSum=-2.046;QD=2.13;ReadPosRankSum=-0.025;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,86:123:99:292,0,635 chrXI 636 . C T 203.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.240;DP=121;Dels=0.00;FS=31.615;HaplotypeScore=52.0591;MLEAC=1;MLEAF=0.500;MQ=25.78;MQ0=1;MQRankSum=2.706;QD=1.68;ReadPosRankSum=-2.691;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,57:121:99:233,0,639 chrXI 638 . G C 196.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.197;DP=121;Dels=0.00;FS=35.566;HaplotypeScore=52.0591;MLEAC=1;MLEAF=0.500;MQ=25.67;MQ0=1;MQRankSum=0.912;QD=1.62;ReadPosRankSum=-1.922;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,58:121:99:226,0,598 chrXI 640 . T C 305.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.697;DP=123;Dels=0.00;FS=76.770;HaplotypeScore=54.7558;MLEAC=1;MLEAF=0.500;MQ=25.61;MQ0=1;MQRankSum=-0.126;QD=2.48;ReadPosRankSum=0.946;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,86:123:99:335,0,570 chrXI 649 . T C 226.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;DP=134;Dels=0.00;FS=58.194;HaplotypeScore=28.6628;MLEAC=1;MLEAF=0.500;MQ=25.91;MQ0=1;MQRankSum=3.603;QD=1.69;ReadPosRankSum=1.659;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,68:134:99:256,0,633 chrXI 656 . C A 268.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.419;DP=134;Dels=0.00;FS=65.912;HaplotypeScore=3.5640;MLEAC=1;MLEAF=0.500;MQ=26.29;MQ0=1;MQRankSum=1.816;QD=2.00;ReadPosRankSum=4.017;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,68:134:99:298,0,685 chrXI 665 . A G 217.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.190;DP=128;Dels=0.00;FS=93.834;HaplotypeScore=43.5597;MLEAC=1;MLEAF=0.500;MQ=26.75;MQ0=1;MQRankSum=1.722;QD=1.70;ReadPosRankSum=7.309;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,60:128:99:247,0,809 chrXI 667 . G A 311.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;DP=125;Dels=0.00;FS=179.834;HaplotypeScore=28.5382;MLEAC=1;MLEAF=0.500;MQ=26.93;MQ0=1;MQRankSum=-0.248;QD=2.49;ReadPosRankSum=4.413;SB=-5.974e-03 GT:AD:DP:GQ:PL 0/1:40,85:125:99:341,0,682 chrXI 673 . A G 233.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.266;DP=126;Dels=0.00;FS=207.261;HaplotypeScore=20.5956;MLEAC=1;MLEAF=0.500;MQ=27.10;MQ0=1;MQRankSum=1.166;QD=1.85;ReadPosRankSum=4.195;SB=-4.348e-03 GT:AD:DP:GQ:PL 0/1:45,81:126:99:263,0,777 chrXI 689 . T G 1225 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=21.2253;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=1;QD=10.65;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,103:115:99:1258,138,0 chrXI 696 . A G 194.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.423;DP=115;Dels=0.00;FS=229.962;HaplotypeScore=15.8877;MLEAC=1;MLEAF=0.500;MQ=27.70;MQ0=0;MQRankSum=0.624;QD=1.69;ReadPosRankSum=-1.324;SB=-3.010e+00 GT:AD:DP:GQ:PL 0/1:60,55:115:99:224,0,923 chrXI 704 . T C 1387 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=3.037;HaplotypeScore=27.4117;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=0;MQRankSum=1.769;QD=12.38;ReadPosRankSum=2.406;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1420,153,0 chrXI 709 . T A 69.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.752;DP=117;Dels=0.00;FS=7.787;HaplotypeScore=34.7532;MLEAC=1;MLEAF=0.500;MQ=27.99;MQ0=0;MQRankSum=2.148;QD=0.59;ReadPosRankSum=-2.874;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,15:117:99:99,0,1032 chrXI 712 . A T 749.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.472;DP=117;Dels=0.00;FS=279.536;HaplotypeScore=35.4183;MLEAC=1;MLEAF=0.500;MQ=27.99;MQ0=0;MQRankSum=0.456;QD=6.40;ReadPosRankSum=5.467;SB=-2.962e+00 GT:AD:DP:GQ:PL 0/1:68,49:117:99:779,0,319 chrXI 715 . C T 974.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850;DP=120;Dels=0.00;FS=205.328;HaplotypeScore=53.3273;MLEAC=1;MLEAF=0.500;MQ=28.02;MQ0=0;MQRankSum=0.338;QD=8.12;ReadPosRankSum=4.043;SB=-1.010e+02 GT:AD:DP:GQ:PL 0/1:53,67:120:93:1004,0,93 chrXI 724 . T G 1317 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=123;Dels=0.00;FS=5.879;HaplotypeScore=79.3074;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;MQRankSum=-0.648;QD=10.71;ReadPosRankSum=2.943;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:1350,150,0 chrXI 726 . C T 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.592;DP=127;Dels=0.00;FS=155.275;HaplotypeScore=97.0878;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=0;MQRankSum=0.365;QD=0.24;ReadPosRankSum=-2.598;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,48:127:61:61,0,1077 chrXI 732 . A T 180.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.807;DP=110;Dels=0.00;FS=109.630;HaplotypeScore=128.8382;MLEAC=1;MLEAF=0.500;MQ=28.22;MQ0=0;MQRankSum=1.179;QD=1.64;ReadPosRankSum=-1.223;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,38:110:99:210,0,136 chrXI 735 . C A 197.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=116.0628;MLEAC=1;MLEAF=0.500;MQ=28.34;MQ0=0;MQRankSum=-0.185;QD=1.79;ReadPosRankSum=0.813;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,38:110:99:227,0,143 chrXI 743 . C T 104.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.650;DP=119;Dels=0.00;FS=47.439;HaplotypeScore=131.7527;MLEAC=1;MLEAF=0.500;MQ=27.98;MQ0=0;MQRankSum=0.203;QD=0.87;ReadPosRankSum=1.426;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,34:119:99:134,0,835 chrXI 749 . T C 852.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.544;DP=132;Dels=0.00;FS=66.187;HaplotypeScore=82.6968;MLEAC=1;MLEAF=0.500;MQ=27.43;MQ0=0;MQRankSum=1.661;QD=6.45;ReadPosRankSum=-0.947;SB=-9.030e+02 GT:AD:DP:GQ:PL 0/1:43,89:132:99:882,0,166 chrXI 753 . A G 84.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.398;DP=140;Dels=0.00;FS=116.549;HaplotypeScore=83.9045;MLEAC=1;MLEAF=0.500;MQ=27.26;MQ0=0;MQRankSum=1.040;QD=0.60;ReadPosRankSum=3.211;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,45:140:99:114,0,911 chrXI 755 . T C 1143 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.695;DP=139;Dels=0.00;FS=7.531;HaplotypeScore=50.6211;MLEAC=2;MLEAF=1.00;MQ=26.75;MQ0=0;MQRankSum=2.897;QD=8.22;ReadPosRankSum=4.120;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:6,133:139:99:1176,135,0 chrXI 818 . T A 1483.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520;DP=514;Dels=0.00;FS=218.965;HaplotypeScore=165.8840;MLEAC=1;MLEAF=0.500;MQ=31.44;MQ0=17;MQRankSum=-2.181;QD=2.89;ReadPosRankSum=2.110;SB=-9.350e+02 GT:AD:DP:GQ:PL 0/1:353,161:514:99:1513,0,6127 chrXI 831 . C T 1472.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.646;DP=583;Dels=0.00;FS=72.724;HaplotypeScore=149.5512;MLEAC=1;MLEAF=0.500;MQ=31.30;MQ0=17;MQRankSum=-2.309;QD=2.52;ReadPosRankSum=1.052;SB=-1.021e+03 GT:AD:DP:GQ:PL 0/1:424,159:583:99:1502,0,7221 chrXI 882 . T C 4167.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.760;DP=407;Dels=0.00;FS=111.518;HaplotypeScore=5.8344;MLEAC=1;MLEAF=0.500;MQ=31.22;MQ0=6;MQRankSum=1.230;QD=10.24;ReadPosRankSum=2.656;SB=-1.693e+03 GT:AD:DP:GQ:PL 0/1:180,225:407:99:4167,0,3368 chrXI 903 . C T 2980.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.896;DP=253;Dels=0.00;FS=51.845;HaplotypeScore=4.1016;MLEAC=1;MLEAF=0.500;MQ=30.22;MQ0=7;MQRankSum=0.449;QD=11.78;ReadPosRankSum=7.150;SB=-9.950e+02 GT:AD:DP:GQ:PL 0/1:87,163:253:99:3010,0,1507 chrXI 911 . A T 3127.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;DP=211;Dels=0.00;FS=24.766;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=29.60;MQ0=7;MQRankSum=0.603;QD=14.82;ReadPosRankSum=6.167;SB=-1.170e+03 GT:AD:DP:GQ:PL 0/1:59,152:211:99:3157,0,954 chrXI 984 . C A 1405.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.316;DP=342;Dels=0.00;FS=4.548;HaplotypeScore=155.7780;MLEAC=1;MLEAF=0.500;MQ=32.08;MQ0=13;MQRankSum=5.305;QD=4.11;ReadPosRankSum=2.707;SB=-3.930e+02 GT:AD:DP:GQ:PL 0/1:244,98:342:99:1435,0,3244 chrXI 986 . C T 3025.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.783;DP=354;Dels=0.00;FS=104.675;HaplotypeScore=159.9538;MLEAC=1;MLEAF=0.500;MQ=31.86;MQ0=15;MQRankSum=2.425;QD=8.55;ReadPosRankSum=4.545;SB=-1.685e+03 GT:AD:DP:GQ:PL 0/1:196,158:354:99:3055,0,1926 chrXI 993 . G C 1380.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.281;DP=381;Dels=0.00;FS=4.425;HaplotypeScore=70.4158;MLEAC=1;MLEAF=0.500;MQ=31.56;MQ0=16;MQRankSum=4.953;QD=3.62;ReadPosRankSum=2.395;SB=-3.670e+02 GT:AD:DP:GQ:PL 0/1:269,109:381:99:1410,0,3433 chrXI 1010 . G T 160.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.935;DP=440;Dels=0.00;FS=76.520;HaplotypeScore=10.1317;MLEAC=1;MLEAF=0.500;MQ=30.97;MQ0=15;MQRankSum=-1.979;QD=0.36;ReadPosRankSum=-3.914;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:366,73:440:99:190,0,5868 chrXI 1012 . C T 104.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.176;DP=442;Dels=0.00;FS=62.641;HaplotypeScore=140.6895;MLEAC=1;MLEAF=0.500;MQ=30.94;MQ0=15;MQRankSum=-1.403;QD=0.24;ReadPosRankSum=-3.346;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:366,74:442:99:134,0,5929 chrXI 1021 . T A 2166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.394;DP=481;Dels=0.00;FS=176.617;HaplotypeScore=73.6696;MLEAC=1;MLEAF=0.500;MQ=30.67;MQ0=15;MQRankSum=0.767;QD=4.50;ReadPosRankSum=2.294;SB=-1.206e+03 GT:AD:DP:GQ:PL 0/1:327,154:481:99:2196,0,4819 chrXI 1056 . G C 1052.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.858;DP=454;Dels=0.00;FS=31.550;HaplotypeScore=106.5419;MLEAC=1;MLEAF=0.500;MQ=29.41;MQ0=11;MQRankSum=-1.334;QD=2.32;ReadPosRankSum=4.929;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:332,116:454:99:1082,0,4966 chrXI 1061 . C A 558.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.702;DP=412;Dels=0.00;FS=84.470;HaplotypeScore=106.3317;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=9;MQRankSum=1.469;QD=1.35;ReadPosRankSum=-5.570;SB=-3.470e+02 GT:AD:DP:GQ:PL 0/1:317,95:412:99:588,0,5143 chrXI 1067 . T C 6478.01 filter AC=2;AF=1.00;AN=2;DP=357;Dels=0.00;FS=0.000;HaplotypeScore=13.5130;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=5;QD=18.15;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,354:357:99:6478,708,0 chrXI 1077 . C A 271.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=18.4531;MLEAC=1;MLEAF=0.500;MQ=27.34;MQ0=3;MQRankSum=0.161;QD=0.85;ReadPosRankSum=-1.067;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:250,67:317:99:301,0,4420 chrXI 1115 . G A 1293.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=1;MLEAF=0.500;MQ=27.09;MQ0=0;MQRankSum=3.185;QD=9.24;ReadPosRankSum=-4.479;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,88:140:99:1323,0,443 chrXI 1117 . A G 390.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.163;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=1;MLEAF=0.500;MQ=27.09;MQ0=0;MQRankSum=-1.641;QD=2.79;ReadPosRankSum=5.126;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,52:140:99:420,0,1158 chrXI 1118 . C G 1026.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.684;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=1;MLEAF=0.500;MQ=26.88;MQ0=0;MQRankSum=2.033;QD=8.48;ReadPosRankSum=-4.173;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,69:121:99:1056,0,424 chrXI 1129 . T A,G 831.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.48;MQ0=0;QD=11.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:0,50,22:72:99:891,376,313,515,0,467 chrXI 1136 . G T 467.04 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.571;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=55.2519;MLEAC=1;MLEAF=0.500;MQ=26.28;MQ0=0;MQRankSum=1.344;QD=8.19;ReadPosRankSum=5.385;SB=-3.050e+00 GT:AD:DP:GQ:PL 0/1:14,43:57:18:497,0,18 chrXI 1144 . A G 93.26 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=0;QD=2.12;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,12:44:15:126,15,0 chrXI 1153 . G A 339 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;QD=7.88;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:42:372,42,0 chrXI 1167 . T C 548 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=42.7030;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;QD=9.96;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:69:581,69,0 chrXI 1179 . T C 123.13 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=2.05;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,60:60:18:156,18,0 chrXI 1187 . A T 565.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.19;MQ0=0;MQRankSum=1.293;QD=7.64;ReadPosRankSum=3.079;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,58:74:99:595,0,164 chrXI 1200 . G T 658.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.663;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=0;MQRankSum=0.744;QD=8.12;ReadPosRankSum=0.506;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,63:81:99:688,0,140 chrXI 1203 . G C 129.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=0;MQRankSum=0.375;QD=1.57;ReadPosRankSum=1.608;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,18:82:99:159,0,611 chrXI 1212 . G A 870 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=10.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:903,102,0 chrXI 1220 . C T 434.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.705;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.33;MQ0=0;MQRankSum=0.064;QD=5.86;ReadPosRankSum=-6.232;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,57:74:99:464,0,116 chrXI 1233 . T A 399.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.37;MQ0=0;MQRankSum=0.137;QD=6.05;ReadPosRankSum=-6.227;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,48:66:99:429,0,150 chrXI 1272 . G A 49.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.49;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:82,9,0 chrXI 2624 . C T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.10;MQ0=0;QD=0.78;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,23:23:6:49,6,0 chrXI 2626 . T A 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.10;MQ0=0;QD=0.73;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,23:23:6:48,6,0 chrXI 2627 . A T 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.10;MQ0=0;QD=0.65;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,23:23:6:46,6,0 chrXI 2631 . A T 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.72;MQ0=0;QD=0.72;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,26:26:6:50,6,0 chrXI 2639 . C T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.89;MQ0=0;QD=0.55;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,27:27:6:46,6,0 chrXI 2652 . A G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;QD=0.66;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,24:24:6:47,6,0 chrXI 2653 . T C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=0;MQRankSum=-1.299;QD=0.65;ReadPosRankSum=2.261;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,24:26:6:48,6,0 chrXI 2655 . C G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=0;QD=0.65;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,26:26:6:48,6,0 chrXI 2661 . A G 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=2.66;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:12:107,12,0 chrXI 2662 . T C 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=2.48;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:12:102,12,0 chrXI 2693 . A G 54.97 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=0;QD=2.75;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:9:87,9,0 chrXI 2703 . G T 83.51 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.46;MQ0=0;QD=4.40;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:12:116,12,0 chrXI 2720 . A G 76.51 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.76;MQ0=0;QD=4.50;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:109,12,0 chrXI 2734 . C T 109.26 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.02;MQ0=1;QD=5.75;SB=-2.827e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:15:142,15,0 chrXI 2820 . A T 377 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.51;MQ0=1;QD=13.46;SB=-4.501e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:51:410,51,0 chrXI 2840 . A G 625 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=0;QD=19.53;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:78:658,78,0 chrXI 2849 . C A 642 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=0;QD=20.06;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:78:675,78,0 chrXI 2865 . A T 531 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=0;QD=18.31;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:69:564,69,0 chrXI 2928 . A G 202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=0;MQRankSum=-1.267;QD=11.88;ReadPosRankSum=2.162;SB=-3.202e+01 GT:AD:DP:GQ:PL 1/1:2,15:17:27:235,27,0 chrXI 2960 . C T 200.01 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;QD=15.39;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:27:233,27,0 chrXI 3028 . G A 486 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.95;MQ0=0;QD=19.44;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:57:519,57,0 chrXI 3030 . C A 471 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;QD=18.12;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:57:504,57,0 chrXI 3042 . T G 418 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.33;MQ0=0;QD=14.93;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:51:451,51,0 chrXI 3047 . C T 432 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.55;MQ0=0;QD=14.90;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:51:465,51,0 chrXI 3107 . T G 823 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.20;MQ0=0;QD=21.66;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:90:856,90,0 chrXI 3136 . T C 948 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.04;MQ0=0;QD=26.33;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:981,108,0 chrXI 3207 . C T 1282 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=21.02;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1315,138,0 chrXI 3224 . A C 1678 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=23.31;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1711,189,0 chrXI 3263 . A G 2101 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=22.59;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2134,237,0 chrXI 3277 . T C 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;MQRankSum=0.990;QD=21.62;ReadPosRankSum=1.691;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1849,201,0 chrXI 3299 . T C 1546 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;QD=19.09;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1579,177,0 chrXI 3391 . C T 894 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;QD=12.25;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:96:927,96,0 chrXI 3393 . G A 898 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;QD=12.30;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:931,99,0 chrXI 3599 . C T 1763 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=22.60;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1796,192,0 chrXI 3638 . A G 1724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=3.104;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=0.332;QD=18.34;ReadPosRankSum=1.658;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1757,192,0 chrXI 3640 . T A 1825 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=19.84;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1858,195,0 chrXI 3696 . T C 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.173;QD=18.89;ReadPosRankSum=1.628;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:1960,210,0 chrXI 3898 . A G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.045;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.316;QD=23.95;ReadPosRankSum=1.704;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:3051,330,0 chrXI 3926 . A G 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8131;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=1.702;QD=20.92;ReadPosRankSum=1.702;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2460,264,0 chrXI 3968 . A T 3184 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.27;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3217,342,0 chrXI 4436 . T C 2622 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.65;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2655,294,0 chrXI 4534 . G A 3885.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.9502;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3885,411,0 chrXI 5078 . A T 3150 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.32;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3183,339,0 chrXI 5087 . T G 2850 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6200;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.93;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2883,309,0 chrXI 5434 . C T 2955 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.2562;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.45;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2988,315,0 chrXI 5655 . T A 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.4216;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.411;QD=25.15;ReadPosRankSum=1.709;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3798,397,0 chrXI 5928 . G A 2808 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.02;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2841,297,0 chrXI 6055 . T C 2670 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2703,294,0 chrXI 6097 . C T 3114 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.84;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3147,327,0 chrXI 6138 . G T 2775 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.23;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2808,300,0 chrXI 6167 . G A 2390 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.20;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2423,261,0 chrXI 6589 . A G 3773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=163;Dels=0.00;FS=11.149;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.106;QD=23.15;ReadPosRankSum=2.956;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:3,158:163:99:3773,432,0 chrXI 6833 . G T 4257.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.2367;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.17;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4257,468,0 chrXI 7021 . C T 4778.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.6089;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.72;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4778,511,0 chrXI 7040 . T C 4699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=216;Dels=0.00;FS=3.324;HaplotypeScore=8.1677;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.137;QD=21.75;ReadPosRankSum=1.668;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4699,504,0 chrXI 7552 . A T 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;MQRankSum=-1.562;QD=21.16;ReadPosRankSum=1.698;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2191,234,0 chrXI 7556 . A G 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;MQRankSum=-1.005;QD=21.40;ReadPosRankSum=1.697;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2173,234,0 chrXI 7571 . T A 1944 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=21.84;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1977,204,0 chrXI 7595 . C T 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.754;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;MQRankSum=-1.284;QD=15.70;ReadPosRankSum=-0.795;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:1,84:87:99:1399,132,0 chrXI 7651 . A C 640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=147.3857;MLEAC=2;MLEAF=1.00;MQ=37.77;MQ0=0;MQRankSum=-1.575;QD=9.70;ReadPosRankSum=1.680;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:78:673,78,0 chrXI 7691 . C T 638 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=39.74;MQ0=0;QD=8.99;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:69:671,69,0 chrXI 7704 . A G 675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=-0.990;QD=9.64;ReadPosRankSum=1.534;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:75:708,75,0 chrXI 7717 . G A 564 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=8.95;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:66:597,66,0 chrXI 7726 . C T 624 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=10.58;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:66:657,66,0 chrXI 7940 . A G 2890 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=23.69;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2923,339,0 chrXI 8044 . G A 4290.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.06;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4290,448,0 chrXI 8079 . C T 4193.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.3483;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=24.10;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4193,447,0 chrXI 8174 . G C 4118.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.08;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:4118,453,0 chrXI 8204 . C G 4174.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.41;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4174,465,0 chrXI 8305 . T C 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=158;Dels=0.00;FS=10.340;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-0.930;QD=17.97;ReadPosRankSum=2.917;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:2872,315,0 chrXI 8317 . A G 2606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=2.984;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;MQRankSum=-0.464;QD=17.14;ReadPosRankSum=2.417;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2639,291,0 chrXI 8368 . C T 2785 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.32;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2818,300,0 chrXI 8566 . A T 4156.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=24.02;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4156,441,0 chrXI 8651 . G A 3488.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.39;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3488,372,0 chrXI 8716 . T G 3010 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.89;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3043,321,0 chrXI 8828 . A G 2579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=120;Dels=0.00;FS=6.662;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.974;QD=21.49;ReadPosRankSum=2.327;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2612,297,0 chrXI 8855 . T C 2885 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=22.02;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2918,312,0 chrXI 8856 . T C 2879 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=21.98;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2912,309,0 chrXI 8893 . A C 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=0.162;QD=20.99;ReadPosRankSum=1.657;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2950,327,0 chrXI 8980 . C T 3425.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3425,357,0 chrXI 9055 . T C 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=139;Dels=0.00;FS=3.038;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.597;QD=22.86;ReadPosRankSum=2.396;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:3210,348,0 chrXI 9262 . T C 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.898;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.4804;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.240;QD=22.08;ReadPosRankSum=-0.847;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3080,314,0 chrXI 9915 . G A 4468.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.2259;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.42;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4468,463,0 chrXI 10393 . G A 3747.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.0573;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.33;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3747,405,0 chrXI 10540 . T C 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=1.219;QD=20.82;ReadPosRankSum=1.706;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2844,318,0 chrXI 10550 . C T 2912 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.36;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2945,315,0 chrXI 10762 . A G 5257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=221;Dels=0.00;FS=11.820;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.482;QD=23.79;ReadPosRankSum=2.931;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:3,216:221:99:5257,559,0 chrXI 10969 . T C 5106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.934;DP=234;Dels=0.00;FS=19.895;HaplotypeScore=23.1127;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.628;QD=21.82;ReadPosRankSum=4.138;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:6,225:233:99:5106,564,0 chrXI 11657 . A C 5370.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=25.09;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5370,577,0 chrXI 11792 . A G 3591.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.1259;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.32;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3591,387,0 chrXI 11938 . G T 76.51 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.02;FS=0.000;HaplotypeScore=105.3173;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=0.64;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:12:109,12,0 chrXI 12060 . C T 3631.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.14;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3631,387,0 chrXI 12080 . A G 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=171;Dels=0.00;FS=5.428;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.942;QD=20.67;ReadPosRankSum=1.671;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3534,408,0 chrXI 12136 . T A 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-0.866;QD=21.85;ReadPosRankSum=1.638;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3268,357,0 chrXI 12224 . T C 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=170;Dels=0.00;FS=3.671;HaplotypeScore=16.5358;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=0.611;QD=22.14;ReadPosRankSum=1.712;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3763,417,0 chrXI 12256 . G A 4310.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=22.10;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4310,457,0 chrXI 12271 . G T 4216.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=20.57;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4216,459,0 chrXI 12322 . C T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=20.19;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3776,411,0 chrXI 12346 . G A 3317.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=21.97;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3317,366,0 chrXI 12369 . T C 2765 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=21.77;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2798,315,0 chrXI 12437 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1644;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=23.70;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3366,354,0 chrXI 12451 . A C 3151 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=21.15;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3184,348,0 chrXI 12460 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=23.05;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3458,360,0 chrXI 12525 . T C 3144 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=21.99;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3177,366,0 chrXI 12560 . G A 3051 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4282;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=20.90;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3084,321,0 chrXI 12572 . T G 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;MQRankSum=-1.706;QD=18.52;ReadPosRankSum=1.680;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,133:137:99:2570,285,0 chrXI 12606 . T C 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=3.072;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;MQRankSum=-0.293;QD=18.79;ReadPosRankSum=1.708;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2720,294,0 chrXI 12620 . A G 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=146;Dels=0.01;FS=6.089;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;MQRankSum=0.280;QD=17.16;ReadPosRankSum=2.853;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:2538,276,0 chrXI 12646 . T C 2784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.369;DP=138;Dels=0.00;FS=9.110;HaplotypeScore=4.2656;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-0.569;QD=20.17;ReadPosRankSum=3.369;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:4,133:138:99:2817,300,0 chrXI 12708 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=20.99;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3296,363,0 chrXI 12724 . A G 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=157;Dels=0.00;FS=13.266;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;MQRankSum=0.645;QD=18.52;ReadPosRankSum=2.916;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:2941,324,0 chrXI 12741 . A G 3086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=159;Dels=0.00;FS=9.115;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;MQRankSum=2.017;QD=19.41;ReadPosRankSum=2.388;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3119,339,0 chrXI 12770 . G A 2980 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.1313;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=18.74;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3013,324,0 chrXI 12868 . T C 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=0.541;QD=22.38;ReadPosRankSum=1.622;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3513,387,0 chrXI 13003 . G C 4018.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.2755;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.20;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4018,444,0 chrXI 13039 . C G 4509.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.98;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4509,501,0 chrXI 13115 . T G 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.0584;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=0.596;QD=24.09;ReadPosRankSum=1.713;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4480,495,0 chrXI 13223 . C T 5339.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.3972;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.83;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5339,550,0 chrXI 13282 . T C 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=176;Dels=0.00;FS=3.772;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.657;QD=21.76;ReadPosRankSum=1.672;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3830,429,0 chrXI 13310 . G A 4022.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.01;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=22.22;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4022,421,0 chrXI 13330 . A G 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=-1.485;QD=20.39;ReadPosRankSum=1.656;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3711,411,0 chrXI 13362 . T C 4258.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=205;Dels=0.00;FS=11.978;HaplotypeScore=181.0007;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=-0.126;QD=20.77;ReadPosRankSum=2.318;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4258,448,0 chrXI 13378 . A G 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=0.290;QD=20.13;ReadPosRankSum=1.714;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3965,435,0 chrXI 13443 . T C 3045 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.02;FS=0.000;HaplotypeScore=17.8722;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.79;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3078,333,0 chrXI 13542 . A C 3133 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=23.92;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3166,351,0 chrXI 13635 . A T 2036 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=12.9579;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=23.14;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2069,216,0 chrXI 13712 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=23.61;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3032,321,0 chrXI 13729 . T G 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=128;Dels=0.00;FS=3.645;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;MQRankSum=-0.319;QD=19.70;ReadPosRankSum=1.704;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,124:128:99:2555,279,0 chrXI 13813 . G A 4091.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.51;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4091,435,0 chrXI 13945 . C A 3705.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=24.22;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3705,387,0 chrXI 13973 . A G 4055.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=23.04;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4055,438,0 chrXI 14122 . C T 3907.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=23.54;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3907,417,0 chrXI 14280 . G C 3327.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.8531;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.48;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3327,363,0 chrXI 14320 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=23.07;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3853,411,0 chrXI 14350 . A G 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=165;Dels=0.00;FS=6.316;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-1.020;QD=18.32;ReadPosRankSum=2.405;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3056,345,0 chrXI 14360 . A G 2916 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=18.57;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2949,315,0 chrXI 14361 . A T 3026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=156;Dels=0.00;FS=6.749;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;MQRankSum=0.102;QD=19.40;ReadPosRankSum=2.418;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3059,318,0 chrXI 14438 . A G 2734 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.70;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2767,318,0 chrXI 14550 . C T 4365.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=23.22;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4365,462,0 chrXI 14569 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=23.10;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4065,435,0 chrXI 14616 . C T 3120 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.66;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3153,333,0 chrXI 14729 . T C 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=176;Dels=0.00;FS=3.011;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.218;QD=22.98;ReadPosRankSum=2.393;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4044,438,0 chrXI 14764 . T C 4055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=192;Dels=0.00;FS=9.950;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.230;QD=21.12;ReadPosRankSum=2.890;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:4055,438,0 chrXI 15132 . A G 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=147;Dels=0.00;FS=3.024;HaplotypeScore=7.3539;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.627;QD=24.10;ReadPosRankSum=2.399;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3542,378,0 chrXI 15430 . A G 3672.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.47;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3672,414,0 chrXI 15715 . G A 1112 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.51;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1145,120,0 chrXI 15842 . A G 495 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=19.80;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:57:528,57,0 chrXI 15843 . A G 456 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=18.24;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:54:489,54,0 chrXI 15848 . A G 427 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=19.41;SB=-6.648e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:48:460,48,0 chrXI 16226 . T G 309 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:36:342,36,0 chrXI 16259 . T G 478 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-0.815;QD=14.06;ReadPosRankSum=1.631;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:1,33:34:57:511,57,0 chrXI 16263 . T A 440 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=12.57;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:54:473,54,0 chrXI 16303 . T C 1580 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1613,180,0 chrXI 16344 . T C 2123 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=18.62;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2156,237,0 chrXI 16345 . T C 2144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.738;QD=18.64;ReadPosRankSum=1.702;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2177,237,0 chrXI 16395 . T C 1972 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.30;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2005,222,0 chrXI 16425 . G A 2526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.256;QD=21.97;ReadPosRankSum=-1.461;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2559,246,0 chrXI 16603 . G T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.4047;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.06;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3727,408,0 chrXI 16671 . T C 4420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=184;Dels=0.00;FS=6.839;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.661;QD=24.02;ReadPosRankSum=2.383;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4420,483,0 chrXI 16738 . T C 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.5205;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.008;QD=23.13;ReadPosRankSum=1.687;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3562,387,0 chrXI 17061 . C T 2990 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3023,324,0 chrXI 17217 . G A 2420 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=11.5019;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.41;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2453,261,0 chrXI 17570 . C T 6336.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.34;SB=-3.337e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:6336,661,0 chrXI 17681 . A G 5473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=242;Dels=0.00;FS=3.012;HaplotypeScore=15.6935;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.372;QD=22.62;ReadPosRankSum=2.368;SB=-3.059e+03 GT:AD:DP:GQ:PL 1/1:2,239:242:99:5473,594,0 chrXI 18001 . G T 5253.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.84;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5253,556,0 chrXI 18848 . A G 4034.01 SnpCluster AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=22.41;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4034,447,0 chrXI 18850 . G C 3859.01 SnpCluster AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;QD=21.68;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3859,438,0 chrXI 18852 . A T 4275.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=178;Dels=0.00;FS=6.761;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;MQRankSum=-0.725;QD=24.02;ReadPosRankSum=2.381;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4275,442,0 chrXI 18863 . T A 4545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=-0.283;QD=21.85;ReadPosRankSum=1.682;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4545,478,0 chrXI 18921 . G A 3733.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.85;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3733,388,0 chrXI 19032 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.3790;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=24.03;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3532,384,0 chrXI 19335 . C T 3280.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=24.12;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3280,366,0 chrXI 19491 . C T 2607 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=23.49;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2640,270,0 chrXI 19503 . A G 2343 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=20.55;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2376,267,0 chrXI 19521 . C T 2105 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=20.64;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2138,219,0 chrXI 19529 . C T 1716 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=18.65;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1749,192,0 chrXI 19563 . C T 1392 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=18.81;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1425,147,0 chrXI 19657 . T C 1648 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=17.35;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1681,177,0 chrXI 19921 . A G 1775 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=22.76;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1808,204,0 chrXI 20209 . G A 762 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.04;FS=0.000;HaplotypeScore=38.2788;MLEAC=2;MLEAF=1.00;MQ=43.53;MQ0=0;QD=7.62;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:84:795,84,0 chrXI 20275 . C T 3220.05 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.61;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3253,348,0 chrXI 20395 . C G 4758.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.8707;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=25.31;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:4758,510,0 chrXI 20424 . A G 4816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=195;Dels=0.00;FS=3.991;HaplotypeScore=8.2728;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=0.781;QD=24.70;ReadPosRankSum=1.714;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4816,528,0 chrXI 20462 . T G 3837.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=20.74;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3837,432,0 chrXI 20476 . A G 3899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=194;Dels=0.00;FS=3.195;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=-1.065;QD=20.10;ReadPosRankSum=1.714;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:3899,423,0 chrXI 20594 . C T 5579.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=4.9683;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=20.36;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:0,273:274:99:5579,583,0 chrXI 20602 . C T 5561.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=4.4553;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=20.00;SB=-3.150e+03 GT:AD:DP:GQ:PL 1/1:0,276:278:99:5561,583,0 chrXI 20616 . G A 5696.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=7.7604;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.56;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:5696,621,0 chrXI 20761 . T C 5820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=272;Dels=0.00;FS=3.276;HaplotypeScore=23.0728;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.269;QD=21.40;ReadPosRankSum=1.706;SB=-3.315e+03 GT:AD:DP:GQ:PL 1/1:1,269:272:99:5820,639,0 chrXI 20824 . A T 6294.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=12.4730;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.48;SB=-3.515e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:6294,679,0 chrXI 20955 . G A 4666.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.81;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4666,495,0 chrXI 21006 . C G 3702.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.92;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3702,411,0 chrXI 21193 . C T 1412 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.02;FS=0.000;HaplotypeScore=4.6000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=15.69;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1445,153,0 chrXI 21194 . A G 1458 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=4.6000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=16.20;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1491,162,0 chrXI 21250 . A T 134.13 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=80.0318;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=1.41;SB=-7.361e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:18:167,18,0 chrXI 21328 . C T 1891 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.94;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1924,198,0 chrXI 21391 . T C 1874 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.05;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1907,207,0 chrXI 21448 . A G 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=133;Dels=0.00;FS=2.972;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-1.026;QD=23.43;ReadPosRankSum=2.339;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3149,342,0 chrXI 21546 . A G 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=4.009;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=1.376;QD=21.26;ReadPosRankSum=1.685;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3137,339,0 chrXI 21568 . T C 2951 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.38;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2984,327,0 chrXI 21855 . C T 2483 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=20.35;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2516,270,0 chrXI 21870 . T C 2125 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=17.71;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2158,234,0 chrXI 22075 . G T 87.51 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.94;MQ0=0;QD=1.29;SB=-5.295e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:12:120,12,0 chrXI 22082 . G A 218.01 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=37.42;MQ0=0;QD=2.87;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:27:251,27,0 chrXI 22088 . C T 625 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=39.17;MQ0=0;QD=7.62;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:69:658,69,0 chrXI 22120 . T G 1394 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=12.79;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1427,153,0 chrXI 22343 . G A 3973.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=23.93;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3973,415,0 chrXI 22917 . C T 4877.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4877,514,0 chrXI 23064 . C T 4008.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.01;FS=0.000;HaplotypeScore=12.9511;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4008,441,0 chrXI 23463 . T C 5816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=256;Dels=0.00;FS=6.351;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.149;QD=22.72;ReadPosRankSum=2.411;SB=-3.199e+03 GT:AD:DP:GQ:PL 1/1:2,253:256:99:5816,642,0 chrXI 24181 . A G 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=-1.216;QD=21.79;ReadPosRankSum=1.689;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3508,402,0 chrXI 24282 . A G 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=131;Dels=0.00;FS=5.901;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;MQRankSum=-1.562;QD=18.30;ReadPosRankSum=2.931;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2430,267,0 chrXI 24291 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.65;MQ0=0;QD=17.67;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2207,243,0 chrXI 24307 . G A 1980 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;QD=15.23;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2013,213,0 chrXI 24311 . A T 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.39;MQ0=0;MQRankSum=0.750;QD=14.93;ReadPosRankSum=1.655;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2033,210,0 chrXI 24330 . A C 1178 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.399;DP=145;Dels=0.00;FS=1.434;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=0.178;QD=8.12;ReadPosRankSum=4.473;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:8,137:145:99:1211,150,0 chrXI 24332 . T G 542 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.236;DP=146;Dels=0.00;FS=3.061;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=29.19;MQ0=0;MQRankSum=1.318;QD=3.71;ReadPosRankSum=5.012;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:9,137:146:61:575,61,0 chrXI 24333 . G T 542 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.906;DP=146;Dels=0.00;FS=3.061;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=29.19;MQ0=0;MQRankSum=-0.439;QD=3.71;ReadPosRankSum=5.012;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:9,137:146:61:575,61,0 chrXI 24349 . C T 2026 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=32.40;MQ0=0;QD=12.99;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2059,213,0 chrXI 24357 . A G 1944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.430;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=32.34;MQ0=0;MQRankSum=-0.224;QD=12.23;ReadPosRankSum=1.692;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:1977,213,0 chrXI 24373 . A G 1941 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=0;QD=12.06;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:1974,216,0 chrXI 24425 . T C 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=175;Dels=0.00;FS=5.809;HaplotypeScore=145.7916;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;MQRankSum=0.798;QD=15.50;ReadPosRankSum=2.960;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:2745,294,0 chrXI 24444 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=157.5687;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;QD=17.61;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3115,333,0 chrXI 24924 . T C 2387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=118;Dels=0.00;FS=3.617;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.612;QD=20.23;ReadPosRankSum=1.672;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,114:118:99:2420,279,0 chrXI 25154 . C T 2457 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=7.8874;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=17.06;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2490,261,0 chrXI 25337 . C T 4629.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=23.03;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4629,484,0 chrXI 25349 . A G 4077.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=20.80;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4077,459,0 chrXI 25386 . G A 4139.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.01;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4139,447,0 chrXI 25508 . T C 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=194;Dels=0.00;FS=3.584;HaplotypeScore=15.9674;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.732;QD=19.71;ReadPosRankSum=1.714;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3824,414,0 chrXI 25610 . T G 3594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=163;Dels=0.00;FS=6.720;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.645;QD=22.05;ReadPosRankSum=2.359;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3594,405,0 chrXI 26043 . T C 4496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=196;Dels=0.00;FS=5.866;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.494;QD=22.94;ReadPosRankSum=1.696;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,192:196:99:4496,478,0 chrXI 26078 . C T 3749.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.86;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3749,405,0 chrXI 26422 . A G 1125 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.23;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1158,129,0 chrXI 26450 . T G 1281 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.09;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1314,144,0 chrXI 26672 . T C 1347 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.94;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1380,147,0 chrXI 26709 . C A 1728 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.74;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1761,183,0 chrXI 26730 . T C 1354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=0.355;QD=17.36;ReadPosRankSum=1.599;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1387,153,0 chrXI 26749 . A G 1430 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=15.71;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1463,174,0 chrXI 26810 . A T 1819 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.91;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1852,204,0 chrXI 27643 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=142;Dels=0.00;FS=2.859;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.218;QD=23.58;ReadPosRankSum=2.380;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3349,360,0 chrXI 28033 . T C 3475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=3.396;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.623;QD=22.71;ReadPosRankSum=1.709;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3475,372,0 chrXI 28267 . T C 4627.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.7752;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.49;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4627,507,0 chrXI 28300 . G C 4371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.0195;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=1.448;QD=23.89;ReadPosRankSum=-1.145;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4371,480,0 chrXI 28372 . A T 4152.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=24.14;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4152,436,0 chrXI 28396 . C T 4102.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.70;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4102,435,0 chrXI 28399 . G A 4106.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.19;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4106,427,0 chrXI 28487 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.78;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4010,424,0 chrXI 28495 . T C 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=177;Dels=0.00;FS=3.893;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.119;QD=21.90;ReadPosRankSum=1.712;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:3877,411,0 chrXI 28551 . A G 3303.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.45;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3303,360,0 chrXI 29485 . G A 5132.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.7056;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.09;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5132,561,0 chrXI 29650 . A G 4833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=203;Dels=0.00;FS=3.031;HaplotypeScore=11.9776;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.373;QD=23.81;ReadPosRankSum=2.401;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4833,537,0 chrXI 29680 . G A 5274.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=4.6435;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.76;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5274,559,0 chrXI 29889 . A G 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=168;Dels=0.00;FS=5.640;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-2.132;QD=22.52;ReadPosRankSum=2.886;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3783,417,0 chrXI 29986 . A G 3342.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=22.58;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3342,354,0 chrXI 30016 . A G 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=137;Dels=0.00;FS=5.755;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;MQRankSum=-1.919;QD=16.09;ReadPosRankSum=2.919;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2238,246,0 chrXI 30025 . C T 2164 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=16.03;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2197,228,0 chrXI 30028 . C T 2139 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;QD=15.84;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2172,222,0 chrXI 30052 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=17.55;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2700,279,0 chrXI 30716 . T G 4815.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.8919;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4815,531,0 chrXI 30923 . A C 2365 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.89;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2398,261,0 chrXI 31042 . G A 2262 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.08;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2295,252,0 chrXI 31094 . G A 2672 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.74;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2705,294,0 chrXI 31185 . T C 1803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.074;QD=22.82;ReadPosRankSum=1.601;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1836,198,0 chrXI 31220 . G T 2004 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=12.0785;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2037,213,0 chrXI 31754 . T C 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=163;Dels=0.00;FS=8.619;HaplotypeScore=14.6576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.954;QD=22.72;ReadPosRankSum=2.419;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:3704,402,0 chrXI 32054 . C T 4281.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.14;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4281,453,0 chrXI 32204 . T C 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=192;Dels=0.00;FS=4.886;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-1.351;QD=21.32;ReadPosRankSum=1.678;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4094,438,0 chrXI 32212 . G A 4121.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.13;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4121,441,0 chrXI 32644 . T C 4603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=199;Dels=0.00;FS=2.802;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.395;QD=23.13;ReadPosRankSum=2.400;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4603,501,0 chrXI 32862 . T C 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=197;Dels=0.00;FS=9.237;HaplotypeScore=16.5629;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.182;QD=19.12;ReadPosRankSum=2.337;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:3767,429,0 chrXI 32956 . C T 4585.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=18.6811;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.56;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,219:223:99:4585,484,0 chrXI 33219 . C G 5223.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5223,565,0 chrXI 33673 . G A 4971.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=21.6013;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.49;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4971,534,0 chrXI 33790 . G A 4530.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.3956;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.88;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4530,475,0 chrXI 37524 . T C 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=3.034;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;MQRankSum=-0.869;QD=18.42;ReadPosRankSum=2.418;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:2925,330,0 chrXI 37530 . G A 2866 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=16.96;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:2899,318,0 chrXI 37551 . A G 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=198;Dels=0.00;FS=7.094;HaplotypeScore=3.5374;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;MQRankSum=-1.158;QD=15.19;ReadPosRankSum=2.399;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:2,192:198:99:3040,345,0 chrXI 37566 . G A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=1.9849;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=15.56;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,225:229:99:3564,384,0 chrXI 37590 . C T 4678.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=17.20;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:4678,493,0 chrXI 37740 . T G 5491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.959;DP=235;Dels=0.00;FS=3.630;HaplotypeScore=10.5736;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=0.602;QD=23.37;ReadPosRankSum=1.331;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:1,232:235:99:5491,577,0 chrXI 37956 . G A 6177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=11.5727;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=-0.632;QD=24.32;ReadPosRankSum=1.705;SB=-3.216e+03 GT:AD:DP:GQ:PL 1/1:1,251:254:99:6177,621,0 chrXI 37995 . G A 4690.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=4.9255;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=18.84;SB=-3.184e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:4690,487,0 chrXI 37998 . G A 4443.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=19.23;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4443,474,0 chrXI 38007 . T C 3998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=222;Dels=0.00;FS=6.951;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;MQRankSum=-1.576;QD=18.01;ReadPosRankSum=2.416;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:3998,453,0 chrXI 38034 . G A 3777.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.7484;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=17.49;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:3777,408,0 chrXI 38261 . A G 5483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=242;Dels=0.00;FS=4.629;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=1.286;QD=22.66;ReadPosRankSum=1.689;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:1,240:242:99:5483,603,0 chrXI 38472 . A G 5426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=256;Dels=0.00;FS=5.457;HaplotypeScore=16.4416;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.728;QD=21.20;ReadPosRankSum=2.933;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:3,252:256:99:5426,603,0 chrXI 38813 . G A 4082.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.19;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4082,438,0 chrXI 39127 . G C 4038.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.21;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4038,444,0 chrXI 39160 . G T 4059.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.19;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4059,424,0 chrXI 39184 . C G 4225.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.01;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4225,474,0 chrXI 39899 . A T 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=154;Dels=0.00;FS=5.997;HaplotypeScore=11.7846;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.137;QD=23.02;ReadPosRankSum=2.889;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3545,375,0 chrXI 40023 . C T 3900.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.5746;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.78;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3900,414,0 chrXI 40080 . T C 4074.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.4876;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.51;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4074,447,0 chrXI 40092 . G T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.26;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4060,430,0 chrXI 40103 . T C 3713.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=19.75;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3713,414,0 chrXI 40164 . G A 3488.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.36;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3488,372,0 chrXI 40206 . C G 3873.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.19;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,162:167:99:3873,423,0 chrXI 40356 . A T 4970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=208;Dels=0.00;FS=11.751;HaplotypeScore=13.5553;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=1.217;QD=23.89;ReadPosRankSum=2.889;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:4970,526,0 chrXI 40479 . T C 4982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.018;QD=23.61;ReadPosRankSum=2.379;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:2,208:211:99:4982,558,0 chrXI 40860 . T A 4676.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.61;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4676,499,0 chrXI 40941 . A G 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=3.612;HaplotypeScore=12.0395;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-1.284;QD=22.74;ReadPosRankSum=1.691;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3865,441,0 chrXI 40977 . C T 3724.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=21.04;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3724,391,0 chrXI 40989 . T C 3295.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=18.83;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,170:175:99:3295,372,0 chrXI 40998 . C G 2974 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=18.02;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3007,339,0 chrXI 41115 . C A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.3577;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.31;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:3771,414,0 chrXI 41369 . G A 3285.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.30;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3285,342,0 chrXI 41442 . C T 3999.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.1686;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.80;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3999,426,0 chrXI 41490 . G A 3541.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.41;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3541,387,0 chrXI 41527 . G T 3189 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.30;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3222,336,0 chrXI 41535 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.26;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3105,324,0 chrXI 41601 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.2951;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.34;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3021,315,0 chrXI 42021 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=111;Dels=0.00;FS=6.802;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=1.363;QD=24.77;ReadPosRankSum=2.361;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2783,303,0 chrXI 42093 . A G 1113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.606;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.642;QD=20.61;ReadPosRankSum=2.870;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:3,51:54:99:1146,126,0 chrXI 42198 . A T 1764 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=24.16;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1797,195,0 chrXI 42210 . A G 1603 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.93;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1636,177,0 chrXI 42424 . T C 1807 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.412;QD=23.78;ReadPosRankSum=2.385;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1840,201,0 chrXI 42450 . G A 2149 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=26.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2182,222,0 chrXI 42555 . A G 2459 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.77;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,104:108:99:2492,291,0 chrXI 42588 . T C 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.6018;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.722;QD=22.75;ReadPosRankSum=2.343;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3173,348,0 chrXI 42738 . A G 4003.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.87;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4003,444,0 chrXI 42757 . C G 3814.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.31;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3814,411,0 chrXI 42807 . A G 3540.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.8342;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.95;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3540,396,0 chrXI 42834 . A G 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=3.062;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-1.278;QD=19.02;ReadPosRankSum=1.691;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3229,363,0 chrXI 42835 . T C 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.802;DP=174;Dels=0.00;FS=12.273;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.126;QD=19.53;ReadPosRankSum=3.702;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:5,169:174:99:3398,366,0 chrXI 43005 . C T 4131.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.59;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4131,444,0 chrXI 43195 . C T 4281.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.01;FS=0.000;HaplotypeScore=11.8439;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.77;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4281,451,0 chrXI 43241 . G T 5714.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=11.1413;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.61;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5714,610,0 chrXI 43368 . G A 5601.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5601,636,0 chrXI 43451 . T C 5315.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.83;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5315,591,0 chrXI 43498 . T C 5066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.651;DP=222;Dels=0.00;FS=5.183;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.450;QD=22.82;ReadPosRankSum=1.716;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:5066,523,0 chrXI 43629 . G A 4857.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.6309;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.53;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4857,514,0 chrXI 43668 . A T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.34;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3530,381,0 chrXI 44246 . T C 4042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-0.642;QD=22.58;ReadPosRankSum=1.674;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4042,438,0 chrXI 44293 . C T 3016 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=20.11;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3049,321,0 chrXI 44298 . G A 2883 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=19.48;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2916,312,0 chrXI 44334 . C T 2874 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=18.54;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2907,309,0 chrXI 44336 . A G 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=151;Dels=0.00;FS=7.094;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-0.806;QD=18.68;ReadPosRankSum=2.368;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:2853,309,0 chrXI 44440 . G A 5095.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.7983;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.85;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:5095,538,0 chrXI 44573 . A G 4341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=191;Dels=0.00;FS=6.229;HaplotypeScore=13.5658;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.131;QD=22.73;ReadPosRankSum=2.372;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4341,468,0 chrXI 44681 . C T 5202.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.9237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-2.938e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5202,559,0 chrXI 45141 . T C 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=133;Dels=0.00;FS=6.461;HaplotypeScore=9.6558;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-0.196;QD=23.54;ReadPosRankSum=2.412;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:3164,345,0 chrXI 45213 . A G 3224.03 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=20.28;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3257,369,0 chrXI 45217 . G T 3578.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=21.55;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3578,367,0 chrXI 45238 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.70;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3451,358,0 chrXI 45375 . T C 4302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=177;Dels=0.00;FS=2.806;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.298;QD=24.31;ReadPosRankSum=2.422;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4302,468,0 chrXI 45525 . A G 5610.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.77;SB=-3.020e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5610,636,0 chrXI 45578 . T G 4106.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.07;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4106,444,0 chrXI 45765 . A G 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=176;Dels=0.00;FS=7.529;HaplotypeScore=19.1847;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.533;QD=22.87;ReadPosRankSum=2.421;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:2,171:176:99:4025,426,0 chrXI 46074 . C T 4167.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.3331;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.84;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4167,430,0 chrXI 46101 . T C 3912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=199;Dels=0.00;FS=8.014;HaplotypeScore=9.3314;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=0.192;QD=19.66;ReadPosRankSum=2.400;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:3912,417,0 chrXI 46134 . T G 4811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=224;Dels=0.00;FS=4.292;HaplotypeScore=8.7243;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.598;QD=21.48;ReadPosRankSum=1.654;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:4811,531,0 chrXI 46275 . C T 3039 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.26;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3072,327,0 chrXI 46282 . C T 2878 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.3183;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=20.71;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2911,306,0 chrXI 46444 . C T 2231 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.66;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2264,246,0 chrXI 46587 . A C 853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.405;QD=17.77;ReadPosRankSum=1.659;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,46:47:99:886,105,0 chrXI 46608 . C T 918 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.86;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,43:44:99:951,105,0 chrXI 46631 . T G 791 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:39:90:824,90,0 chrXI 46715 . A T 108.26 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;QD=6.77;SB=-1.443e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:15:141,15,0 chrXI 46718 . G A 139.13 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=6.96;SB=-1.431e+02 GT:AD:DP:GQ:PL 1/1:0,19:20:18:172,18,0 chrXI 46843 . C T 485 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=25.53;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:54:518,54,0 chrXI 46848 . C A 468 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=22.29;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:54:501,54,0 chrXI 46850 . T G 424 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.20;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:51:457,51,0 chrXI 46912 . G A 729 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=22.78;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:762,81,0 chrXI 46995 . A G 2216 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.85;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2249,246,0 chrXI 47023 . C T 2385 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=25.11;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2418,261,0 chrXI 47201 . T C 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.324;QD=22.28;ReadPosRankSum=1.710;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3454,375,0 chrXI 47225 . G A 3547.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=20.50;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3547,364,0 chrXI 47231 . A C 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-0.775;QD=18.30;ReadPosRankSum=2.271;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:3313,360,0 chrXI 47241 . A G 3332.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.7024;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=17.63;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3332,369,0 chrXI 47357 . C T 6889.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=12.8745;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.78;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:0,277:278:99:6889,727,0 chrXI 47435 . A T 5543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.692;DP=243;Dels=0.00;FS=6.718;HaplotypeScore=14.9464;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.438;QD=22.81;ReadPosRankSum=3.543;SB=-3.142e+03 GT:AD:DP:GQ:PL 1/1:5,236:243:99:5543,592,0 chrXI 47481 . A G 5827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=247;Dels=0.00;FS=6.217;HaplotypeScore=13.5992;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.870;QD=23.59;ReadPosRankSum=2.390;SB=-3.149e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:5827,628,0 chrXI 47531 . G A 6275.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=14.2848;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.23;SB=-3.074e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:6275,670,0 chrXI 47705 . T C 5438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=245;Dels=0.00;FS=6.146;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.566;QD=22.20;ReadPosRankSum=2.429;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:2,243:245:99:5438,615,0 chrXI 47837 . G A 5336.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=20.5505;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.51;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5336,571,0 chrXI 48319 . A G 7092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.093;DP=306;Dels=0.00;FS=14.124;HaplotypeScore=21.2904;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.134;QD=23.18;ReadPosRankSum=4.144;SB=-3.617e+03 GT:AD:DP:GQ:PL 1/1:6,298:306:99:7092,775,0 chrXI 48391 . G T 5809.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=17.5042;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.33;SB=-3.010e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5809,613,0 chrXI 48477 . A G 5935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=264;Dels=0.00;FS=2.978;HaplotypeScore=22.4847;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.827;QD=22.48;ReadPosRankSum=2.403;SB=-3.088e+03 GT:AD:DP:GQ:PL 1/1:2,262:264:99:5935,637,0 chrXI 48522 . G A 5343.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.2157;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.43;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5343,556,0 chrXI 48601 . G A 4619.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.42;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,202:206:99:4619,516,0 chrXI 48808 . C T 4328.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.9133;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.59;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4328,457,0 chrXI 49741 . C T 2799 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.53;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2832,309,0 chrXI 49819 . C T 2013 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.54;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2046,216,0 chrXI 50038 . G A 5119.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.9216;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.80;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5119,538,0 chrXI 50257 . G A 5086.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.44;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5086,532,0 chrXI 50395 . T G 3042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.262;QD=22.87;ReadPosRankSum=1.680;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3075,345,0 chrXI 50810 . C T 804 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.62;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:837,87,0 chrXI 51472 . T C 2777 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.7323;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.02;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2810,303,0 chrXI 51512 . A G 2442 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.92;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2475,261,0 chrXI 51558 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=25.13;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2848,294,0 chrXI 52588 . T C 3465.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.86;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3465,375,0 chrXI 52628 . G A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.7432;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.02;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3825,402,0 chrXI 53112 . A G 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=161;Dels=0.00;FS=9.700;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=-0.456;QD=22.78;ReadPosRankSum=2.956;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3668,399,0 chrXI 53256 . C T 2014 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.38;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2047,219,0 chrXI 53379 . T C 1041 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.05;FS=0.000;HaplotypeScore=4.7633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.79;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,56:59:99:1074,120,0 chrXI 53539 . C T 1341 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1374,147,0 chrXI 53656 . T C 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8962;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.472;QD=25.22;ReadPosRankSum=2.937;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:3,140:143:99:3607,396,0 chrXI 53931 . A G 3874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.6032;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.297;QD=22.79;ReadPosRankSum=1.712;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3874,423,0 chrXI 54204 . T C 4941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=220;Dels=0.00;FS=12.990;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.324;QD=22.46;ReadPosRankSum=3.420;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:4,214:220:99:4941,558,0 chrXI 54420 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.992;DP=163;Dels=0.00;FS=5.246;HaplotypeScore=15.0994;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.363;QD=19.81;ReadPosRankSum=3.318;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:4,157:163:99:3261,351,0 chrXI 55092 . G A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.84;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3822,403,0 chrXI 55108 . G A 4064.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.73;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4064,444,0 chrXI 55185 . T A 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.401;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=16.8565;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.717;QD=19.91;ReadPosRankSum=0.211;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:4580,495,0 chrXI 56302 . C T 4386.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.8143;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.37;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4386,451,0 chrXI 56674 . G A 5703.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=12.8241;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.85;SB=-3.205e+03 GT:AD:DP:GQ:PL 1/1:0,255:261:99:5703,595,0 chrXI 56757 . A T 5212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=230;Dels=0.00;FS=6.014;HaplotypeScore=19.0254;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.052;QD=22.66;ReadPosRankSum=2.970;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:3,227:230:99:5212,553,0 chrXI 57152 . G A 3544.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.95;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3544,369,0 chrXI 58043 . G A 5479.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=14.9809;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.02;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5479,568,0 chrXI 58986 . C A 3725.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.17;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3725,396,0 chrXI 59004 . T A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.44;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3298,345,0 chrXI 59136 . A C 4775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=214;Dels=0.00;FS=3.261;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.210;QD=22.31;ReadPosRankSum=1.684;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4775,525,0 chrXI 59178 . T C 5259.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.37;SB=-2.853e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5259,564,0 chrXI 59361 . A G 4847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.7281;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.934;QD=22.03;ReadPosRankSum=1.668;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:1,216:220:99:4847,534,0 chrXI 59582 . G A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0722;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4035,426,0 chrXI 59637 . T C 4058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=181;Dels=0.00;FS=9.776;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.906;QD=22.42;ReadPosRankSum=2.917;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:4058,432,0 chrXI 59730 . T C 5185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=233;Dels=0.00;FS=3.027;HaplotypeScore=17.3265;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.260;QD=22.25;ReadPosRankSum=2.365;SB=-3.066e+03 GT:AD:DP:GQ:PL 1/1:2,229:233:99:5185,550,0 chrXI 59823 . A G 4716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.965;DP=201;Dels=0.00;FS=11.939;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.455;QD=23.46;ReadPosRankSum=2.915;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:4716,510,0 chrXI 59874 . T C 4917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=215;Dels=0.00;FS=3.112;HaplotypeScore=7.6509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.540;QD=22.87;ReadPosRankSum=1.700;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4917,543,0 chrXI 60173 . G A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.55;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3485,363,0 chrXI 60228 . A G 3469.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.28;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3469,372,0 chrXI 60438 . T C 4099.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.1998;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.42;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4099,465,0 chrXI 61076 . G A 4434.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.5992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4434,466,0 chrXI 61338 . G C 4215.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.42;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4215,477,0 chrXI 61541 . A G 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=157;Dels=0.00;FS=6.014;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.930;QD=22.03;ReadPosRankSum=2.878;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3459,369,0 chrXI 62225 . C A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.3816;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.90;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3252,339,0 chrXI 62229 . T C 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=150;Dels=0.00;FS=3.033;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-0.500;QD=20.78;ReadPosRankSum=2.417;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3150,345,0 chrXI 62759 . T C 6062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=258;Dels=0.00;FS=10.142;HaplotypeScore=8.2855;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.809;QD=23.50;ReadPosRankSum=2.957;SB=-3.112e+03 GT:AD:DP:GQ:PL 1/1:3,255:258:99:6062,652,0 chrXI 63297 . G A 3689.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.20;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3689,393,0 chrXI 63525 . A G 3136 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.91;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3169,363,0 chrXI 63630 . A C 3959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.5063;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-1.559;QD=21.75;ReadPosRankSum=1.713;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3959,435,0 chrXI 63649 . T C 3713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=3.415;HaplotypeScore=7.1880;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.731;QD=20.40;ReadPosRankSum=1.674;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3713,420,0 chrXI 63943 . C G 2144 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=21.23;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2177,246,0 chrXI 63975 . G A 1137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.835;DP=70;Dels=0.00;FS=1.277;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.11;MQ0=0;MQRankSum=0.109;QD=16.24;ReadPosRankSum=0.999;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:10,60:70:99:1170,126,0 chrXI 63984 . C T 655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.051;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=33.37;MQ0=0;MQRankSum=-0.111;QD=10.92;ReadPosRankSum=-0.051;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:10,49:60:75:688,75,0 chrXI 63999 . C G 299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.666;DP=40;Dels=0.00;FS=3.287;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;MQRankSum=-1.393;QD=7.47;ReadPosRankSum=-0.394;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:11,29:40:39:332,39,0 chrXI 64001 . G T 308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.168;DP=39;Dels=0.00;FS=3.441;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.16;MQ0=0;MQRankSum=-1.014;QD=7.90;ReadPosRankSum=-0.328;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:11,28:39:36:341,36,0 chrXI 64023 . A C 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=23;Dels=0.00;FS=1.674;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.08;MQ0=0;MQRankSum=-0.215;QD=1.12;ReadPosRankSum=3.293;SB=-8.276e+01 GT:AD:DP:GQ:PL 1/1:11,12:23:6:57,6,0 chrXI 64025 . T G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.769;DP=23;Dels=0.00;FS=1.674;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.08;MQ0=0;MQRankSum=-2.308;QD=0.95;ReadPosRankSum=3.293;SB=-7.974e+01 GT:AD:DP:GQ:PL 1/1:11,12:23:6:53,6,0 chrXI 64032 . G C 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.60;SB=-8.180e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:6:52,6,0 chrXI 64059 . C T 147.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.195;DP=43;Dels=0.00;FS=5.525;HaplotypeScore=3.9609;MLEAC=2;MLEAF=1.00;MQ=32.35;MQ0=0;MQRankSum=-0.941;QD=3.42;ReadPosRankSum=0.021;SB=-4.321e+02 GT:AD:DP:GQ:PL 1/1:4,39:43:21:180,21,0 chrXI 64062 . T C 231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.744;DP=49;Dels=0.00;FS=13.869;HaplotypeScore=6.3270;MLEAC=2;MLEAF=1.00;MQ=35.24;MQ0=0;MQRankSum=-1.231;QD=4.71;ReadPosRankSum=1.177;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:8,41:49:33:264,33,0 chrXI 64092 . A C 912 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7484;MLEAC=2;MLEAF=1.00;MQ=40.20;MQ0=0;QD=11.69;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,74:78:99:945,105,0 chrXI 64094 . T G 927 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.272;DP=79;Dels=0.00;FS=7.815;HaplotypeScore=3.8154;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;MQRankSum=0.956;QD=11.73;ReadPosRankSum=-1.963;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:5,74:79:99:960,108,0 chrXI 64101 . A C 1109 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;QD=12.60;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1142,126,0 chrXI 64203 . T C 280.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.217;DP=215;Dels=0.00;FS=2.791;HaplotypeScore=15.0818;MLEAC=1;MLEAF=0.500;MQ=50.14;MQ0=0;MQRankSum=-5.334;QD=1.30;ReadPosRankSum=-4.540;SB=-2.200e+02 GT:AD:DP:GQ:PL 0/1:159,56:215:99:310,0,2791 chrXI 64224 . C T 4645.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=18.96;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:4645,498,0 chrXI 64248 . C T 1009.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.932;DP=251;Dels=0.00;FS=2.412;HaplotypeScore=17.1794;MLEAC=1;MLEAF=0.500;MQ=48.03;MQ0=0;MQRankSum=1.088;QD=4.02;ReadPosRankSum=-0.551;SB=-4.810e+02 GT:AD:DP:GQ:PL 0/1:155,95:250:99:1039,0,2716 chrXI 64251 . T C 727.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.208;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=16.3908;MLEAC=1;MLEAF=0.500;MQ=47.93;MQ0=0;MQRankSum=2.223;QD=2.94;ReadPosRankSum=-0.311;SB=-4.110e+02 GT:AD:DP:GQ:PL 0/1:175,72:247:99:757,0,2987 chrXI 64254 . C T 807.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.476;DP=250;Dels=0.00;FS=3.223;HaplotypeScore=16.3908;MLEAC=1;MLEAF=0.500;MQ=47.75;MQ0=0;MQRankSum=-1.681;QD=3.23;ReadPosRankSum=-0.485;SB=-4.230e+02 GT:AD:DP:GQ:PL 0/1:168,82:250:99:837,0,3006 chrXI 64260 . C T 3161.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.400;DP=254;Dels=0.00;FS=2.457;HaplotypeScore=12.7026;MLEAC=1;MLEAF=0.500;MQ=47.53;MQ0=0;MQRankSum=3.404;QD=12.44;ReadPosRankSum=2.432;SB=-1.407e+03 GT:AD:DP:GQ:PL 0/1:77,177:254:99:3191,0,767 chrXI 64560 . A G 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.5268;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-1.627;QD=19.96;ReadPosRankSum=1.627;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3293,366,0 chrXI 64563 . A T 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.405;DP=162;Dels=0.00;FS=2.049;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=-0.407;QD=21.06;ReadPosRankSum=2.710;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:4,157:162:99:3412,372,0 chrXI 64590 . A G 3301.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.89;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3301,348,0 chrXI 64785 . T C 3011 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.5345;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=23.34;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3044,348,0 chrXI 64947 . G A 2639 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.81;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2672,276,0 chrXI 65424 . T A 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.067;QD=24.23;ReadPosRankSum=1.640;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3658,390,0 chrXI 65567 . C T 5287.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=25.92;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5287,556,0 chrXI 65661 . A G 4643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=3.291;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.461;QD=24.06;ReadPosRankSum=1.714;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4643,501,0 chrXI 65922 . A G 4253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.787;QD=24.16;ReadPosRankSum=1.693;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4253,451,0 chrXI 66027 . G A 5213.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.4366;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.91;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5213,547,0 chrXI 66073 . A T 4447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.583;QD=22.69;ReadPosRankSum=1.697;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4447,460,0 chrXI 67786 . T C 79.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;DP=71;Dels=0.00;FS=3.671;HaplotypeScore=33.7375;MLEAC=1;MLEAF=0.500;MQ=49.26;MQ0=0;MQRankSum=3.379;QD=1.11;ReadPosRankSum=-1.633;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:42,25:71:96:109,0,96 chrXI 67862 . C G 1908 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8865;MLEAC=2;MLEAF=1.00;MQ=60.76;MQ0=0;QD=21.68;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1941,222,0 chrXI 67872 . C G 1926 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.54;MQ0=0;QD=22.93;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1959,210,0 chrXI 67994 . G A 1402 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=23.37;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1435,156,0 chrXI 68934 . G A 6732.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=19.7194;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.90;SB=-3.332e+03 GT:AD:DP:GQ:PL 1/1:0,292:294:99:6732,718,0 chrXI 69070 . A T 5331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=248;Dels=0.00;FS=6.772;HaplotypeScore=17.9592;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.113;QD=21.50;ReadPosRankSum=2.410;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:2,246:248:99:5331,579,0 chrXI 69406 . A G 5351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.759;DP=246;Dels=0.00;FS=7.679;HaplotypeScore=15.3378;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.000;QD=21.75;ReadPosRankSum=3.816;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:5,241:246:99:5351,579,0 chrXI 72614 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=20.64;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3632,411,0 chrXI 72638 . G A 3442.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.38;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3442,378,0 chrXI 73999 . A G 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-1.197;QD=22.94;ReadPosRankSum=1.709;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3418,372,0 chrXI 74052 . T C 2041 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=17.15;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2074,234,0 chrXI 74086 . C T 1047 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=0;QD=10.37;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1080,117,0 chrXI 74090 . G C 1028 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;QD=10.38;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1061,114,0 chrXI 74091 . C T 1002 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=7.720;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;MQRankSum=0.833;QD=10.12;ReadPosRankSum=-0.311;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1035,108,0 chrXI 74093 . G A 1069 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=0;QD=10.58;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1102,120,0 chrXI 74103 . C A 1314 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=34.79;MQ0=0;QD=10.35;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1347,141,0 chrXI 74157 . T C 2955 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=18.13;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2988,336,0 chrXI 74163 . C T 3080 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=18.78;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3113,336,0 chrXI 74223 . T C 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=3.203;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=0.753;QD=19.21;ReadPosRankSum=1.657;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2703,291,0 chrXI 74375 . C G 4279.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=24.18;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4279,462,0 chrXI 74502 . A C 3187 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=20.43;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3220,357,0 chrXI 74535 . T A 2609 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;QD=17.87;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2642,282,0 chrXI 74537 . T C 2344 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;QD=16.28;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2377,255,0 chrXI 74561 . G T 2179 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=16.02;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2212,237,0 chrXI 74599 . T C 1633 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=17.95;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1666,177,0 chrXI 74603 . A C 1554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=0.476;QD=17.08;ReadPosRankSum=1.694;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1587,171,0 chrXI 74756 . C T 2037 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.02;FS=0.000;HaplotypeScore=5.2885;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=22.63;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2070,216,0 chrXI 74922 . G A 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=210.0195;MLEAC=1;MLEAF=0.500;MQ=53.32;MQ0=0;MQRankSum=-0.913;QD=0.26;ReadPosRankSum=-6.659;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:104,19:124:62:62,0,87 chrXI 74941 . G A 2127 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=18.66;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2160,240,0 chrXI 75013 . G A 3525.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.1015;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.36;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3525,387,0 chrXI 76124 . A G 5264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=223;Dels=0.00;FS=10.622;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.228;QD=23.61;ReadPosRankSum=2.428;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:5264,609,0 chrXI 76522 . T C 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=185;Dels=0.00;FS=12.286;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.729;QD=22.31;ReadPosRankSum=3.325;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:4,177:185:99:4128,465,0 chrXI 76804 . C T 4811.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.2155;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.18;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,195:199:99:4811,511,0 chrXI 76914 . T C 4741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=202;Dels=0.00;FS=3.925;HaplotypeScore=11.2095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.537;QD=23.47;ReadPosRankSum=1.715;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4741,519,0 chrXI 77001 . A G 3080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.9683;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.234;QD=20.81;ReadPosRankSum=1.568;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3113,333,0 chrXI 77002 . A G 3035 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.9683;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.37;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3068,330,0 chrXI 77172 . C T 3150 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.82;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3183,336,0 chrXI 77212 . A T 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=3.054;HaplotypeScore=10.5484;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.087;QD=22.52;ReadPosRankSum=1.592;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2262,240,0 chrXI 77517 . A C 3751.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3751,408,0 chrXI 78125 . T C 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.357;DP=155;Dels=0.00;FS=4.901;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.231;QD=24.03;ReadPosRankSum=3.380;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:4,151:155:99:3724,408,0 chrXI 78341 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.02;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4179,442,0 chrXI 78422 . A G 4613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=190;Dels=0.00;FS=9.096;HaplotypeScore=11.4878;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.898;QD=24.28;ReadPosRankSum=2.424;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4613,507,0 chrXI 78581 . A G 3186 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.5263;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.82;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3219,351,0 chrXI 78639 . A G 2949 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.01;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2982,327,0 chrXI 78708 . A T 2261 filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2294,243,0 chrXI 78797 . C T 177.03 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=9.84;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:24:210,24,0 chrXI 79142 . T G 2472 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.13;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2505,276,0 chrXI 79181 . A G 2605 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2638,288,0 chrXI 79688 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.10;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3304,360,0 chrXI 79729 . G A 3584.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.22;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3584,378,0 chrXI 79814 . G A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.19;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3526,369,0 chrXI 80472 . G A 6147.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=9.3725;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=26.27;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:6147,637,0 chrXI 80724 . C T 4396.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.2512;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=24.70;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4396,463,0 chrXI 80750 . T G 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=4.381;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-0.489;QD=21.54;ReadPosRankSum=1.691;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3683,399,0 chrXI 80751 . C A 3850.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=22.51;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3850,405,0 chrXI 80792 . A G 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=154;Dels=0.00;FS=2.694;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=0.215;QD=19.51;ReadPosRankSum=2.354;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3038,336,0 chrXI 80807 . T A 3043 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=19.63;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3076,327,0 chrXI 80882 . A G 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.123;DP=138;Dels=0.00;FS=13.040;HaplotypeScore=11.0737;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.895;QD=20.25;ReadPosRankSum=3.394;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:4,132:138:99:2827,318,0 chrXI 81028 . T A 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=0.445;QD=19.33;ReadPosRankSum=1.685;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2894,300,0 chrXI 81030 . G A 2454 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=16.81;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2487,276,0 chrXI 81143 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.7898;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.05;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3253,348,0 chrXI 81244 . T C 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=192;Dels=0.00;FS=3.033;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=0.441;QD=20.78;ReadPosRankSum=2.283;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:3989,438,0 chrXI 81518 . T C 3390.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.55;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3390,360,0 chrXI 81532 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=188;Dels=0.00;FS=3.019;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-0.532;QD=18.38;ReadPosRankSum=2.397;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:3456,375,0 chrXI 81758 . A G 5102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=17.7038;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=1.201;QD=22.09;ReadPosRankSum=1.788;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:2,228:231:99:5102,585,0 chrXI 81838 . T C 6000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.289;DP=274;Dels=0.00;FS=8.510;HaplotypeScore=19.0772;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.054;QD=21.90;ReadPosRankSum=3.391;SB=-3.058e+03 GT:AD:DP:GQ:PL 1/1:4,269:274:99:6000,649,0 chrXI 81865 . T C 6667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=13.7018;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.664;QD=21.86;ReadPosRankSum=1.687;SB=-3.810e+03 GT:AD:DP:GQ:PL 1/1:1,304:305:99:6667,718,0 chrXI 82123 . C T 7021.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=13.2615;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.08;SB=-3.792e+03 GT:AD:DP:GQ:PL 1/1:0,277:280:99:7021,724,0 chrXI 82441 . C T 4600.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=17.0841;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=18.93;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:4600,492,0 chrXI 82621 . G A 2197 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=16.90;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2230,240,0 chrXI 82729 . A G 1728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=74;Dels=0.00;FS=7.721;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.317;QD=23.35;ReadPosRankSum=1.635;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:1,70:74:99:1761,195,0 chrXI 82791 . G C 2282 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.08;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2315,252,0 chrXI 83100 . A G 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=151;Dels=0.00;FS=6.965;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.236;QD=24.79;ReadPosRankSum=2.417;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3743,411,0 chrXI 83175 . C A 4292.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.0972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4292,448,0 chrXI 83316 . C T 5820.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.47;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5820,607,0 chrXI 83549 . A G 4306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.992;QD=22.43;ReadPosRankSum=1.696;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4306,465,0 chrXI 83733 . A G 1005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=0;MQRankSum=-1.678;QD=15.70;ReadPosRankSum=1.678;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1038,111,0 chrXI 83745 . T G 844 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.76;MQ0=0;QD=13.84;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:96:877,96,0 chrXI 83746 . G A 875 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.76;MQ0=0;QD=14.34;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:96:908,96,0 chrXI 83753 . A G 873 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.76;MQ0=0;MQRankSum=0.028;QD=14.31;ReadPosRankSum=1.675;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:906,99,0 chrXI 83760 . A G 765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=0;MQRankSum=1.444;QD=12.75;ReadPosRankSum=1.675;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:90:798,90,0 chrXI 83792 . C G 636 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=12.98;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:75:669,75,0 chrXI 83795 . C T 523 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=10.06;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:60:556,60,0 chrXI 83800 . T A 648 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=5.099;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;MQRankSum=1.669;QD=11.78;ReadPosRankSum=1.669;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:72:681,72,0 chrXI 83830 . T C 832 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.14;MQ0=0;QD=14.34;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:93:865,93,0 chrXI 83853 . C T 979 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.25;MQ0=0;QD=14.61;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1012,114,0 chrXI 83859 . G A 939 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=0;QD=13.81;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:972,105,0 chrXI 83889 . C T 1021 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=15.95;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1054,117,0 chrXI 83901 . G A 1022 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=34.75;MQ0=0;QD=17.32;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1055,111,0 chrXI 84009 . C T 1853 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.60;MQ0=0;QD=22.33;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1886,201,0 chrXI 84020 . T C 1338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.27;MQ0=0;MQRankSum=-0.716;QD=17.84;ReadPosRankSum=1.686;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1371,153,0 chrXI 84029 . C A 1367 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;QD=17.99;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1400,159,0 chrXI 84057 . G A 1342 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.58;MQ0=0;QD=17.21;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1375,159,0 chrXI 84078 . T C 1049 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;QD=16.39;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1082,129,0 chrXI 84086 . G T 967 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=32.07;MQ0=0;QD=16.96;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1000,111,0 chrXI 84139 . A G 1194 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;QD=15.92;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1227,135,0 chrXI 84151 . C T 1069 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=15.72;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1102,120,0 chrXI 84163 . C T 1280 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=17.30;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1313,141,0 chrXI 84166 . G T 1328 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=0;QD=17.71;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1361,144,0 chrXI 84171 . C G 1300 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.30;MQ0=0;QD=16.46;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1333,144,0 chrXI 84180 . G C 1129 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=34.09;MQ0=0;QD=13.13;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1162,135,0 chrXI 84187 . T C 1268 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=35.76;MQ0=0;QD=15.46;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1301,141,0 chrXI 84259 . T C 1354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=81;Dels=0.00;FS=4.063;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;MQRankSum=-0.548;QD=16.72;ReadPosRankSum=1.688;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:1,78:81:99:1387,150,0 chrXI 84308 . A T 577 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.7446;MLEAC=2;MLEAF=1.00;MQ=35.36;MQ0=0;QD=10.12;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:69:610,69,0 chrXI 84319 . T C 893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.44;MQ0=0;MQRankSum=-1.732;QD=14.40;ReadPosRankSum=1.676;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:926,105,0 chrXI 84335 . C T 1142 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.53;MQ0=0;QD=16.08;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1175,123,0 chrXI 84350 . G A 1466 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=0;QD=17.66;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1499,159,0 chrXI 84589 . C T 3911.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=22.87;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3911,414,0 chrXI 84611 . A G 4176.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.5865;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.59;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4176,450,0 chrXI 84689 . G A 3595.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.46;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3595,381,0 chrXI 85003 . T C 4105.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.32;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4105,444,0 chrXI 85027 . A G 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=190;Dels=0.00;FS=2.575;HaplotypeScore=8.6471;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.487;QD=19.43;ReadPosRankSum=2.953;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:3,187:190:99:3691,405,0 chrXI 85423 . T A 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.327;QD=23.95;ReadPosRankSum=1.710;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3689,393,0 chrXI 85435 . C T 3692.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.61;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3692,390,0 chrXI 85468 . C G 2963 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.01;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2996,330,0 chrXI 85522 . C T 2362 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.90;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2395,249,0 chrXI 85567 . T C 3831.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.65;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3831,417,0 chrXI 85801 . T C 2364 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.6023;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.03;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2397,261,0 chrXI 85821 . T C 2054 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.50;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2087,222,0 chrXI 85837 . T G 1904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=108;Dels=0.00;FS=4.938;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.359;QD=17.63;ReadPosRankSum=1.667;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,105:108:99:1937,219,0 chrXI 86206 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.96;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1543,162,0 chrXI 86234 . C T 2125 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=26.90;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2158,225,0 chrXI 86327 . T C 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.716;QD=24.75;ReadPosRankSum=1.686;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1889,204,0 chrXI 86346 . G A 1871 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.99;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1904,201,0 chrXI 87002 . A G 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.225;QD=21.81;ReadPosRankSum=1.688;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3446,375,0 chrXI 87119 . C T 3745.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.85;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3745,396,0 chrXI 87176 . T A 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.346;QD=22.03;ReadPosRankSum=1.642;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2566,282,0 chrXI 87422 . T G 4266.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.83;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4266,465,0 chrXI 87764 . A G 4329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=3.138;HaplotypeScore=9.9252;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=1.392;QD=25.02;ReadPosRankSum=1.712;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4329,465,0 chrXI 88322 . T C 3602.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3602,393,0 chrXI 88476 . C A 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=129;Dels=0.00;FS=3.148;HaplotypeScore=6.0771;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.135;QD=23.05;ReadPosRankSum=1.705;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3007,339,0 chrXI 89063 . A T 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.886;QD=21.38;ReadPosRankSum=1.692;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1872,207,0 chrXI 89097 . T G 1792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=0.684;QD=22.97;ReadPosRankSum=1.550;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:1,75:78:99:1825,195,0 chrXI 89124 . A G 1286 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.09;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1319,150,0 chrXI 89225 . T A 2549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.770;DP=121;Dels=0.00;FS=2.322;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=0.202;QD=21.07;ReadPosRankSum=3.718;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:5,116:121:99:2582,273,0 chrXI 89262 . G A 1706 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=14.22;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1739,180,0 chrXI 89273 . A G 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=4.384;HaplotypeScore=101.1812;MLEAC=2;MLEAF=1.00;MQ=40.69;MQ0=0;MQRankSum=-1.208;QD=12.28;ReadPosRankSum=2.111;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:1372,147,0 chrXI 89285 . T C 965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=92.0875;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=0;MQRankSum=-0.328;QD=8.69;ReadPosRankSum=1.701;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:998,111,0 chrXI 89332 . T C 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.0387;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-0.237;QD=20.91;ReadPosRankSum=2.424;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4014,435,0 chrXI 89367 . T C 4921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.217;QD=21.87;ReadPosRankSum=1.717;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:4921,555,0 chrXI 89374 . A G 4992.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=6.5363;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.15;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:4992,558,0 chrXI 89534 . A T 5655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=271;Dels=0.00;FS=3.026;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.786;QD=20.87;ReadPosRankSum=1.681;SB=-3.549e+03 GT:AD:DP:GQ:PL 1/1:1,270:271:99:5655,589,0 chrXI 89545 . C T 5462.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.23;SB=-3.715e+03 GT:AD:DP:GQ:PL 1/1:0,283:284:99:5462,568,0 chrXI 89554 . C T 5352.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=3.8262;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=18.52;SB=-3.687e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:5352,591,0 chrXI 90349 . A G 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=173;Dels=0.00;FS=10.938;HaplotypeScore=13.4883;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.550;QD=23.23;ReadPosRankSum=2.911;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:3,167:173:99:4019,432,0 chrXI 90412 . A G 3778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.1224;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-0.184;QD=19.99;ReadPosRankSum=1.714;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3778,405,0 chrXI 90418 . G A 3992.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.6666;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=19.67;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:3992,423,0 chrXI 90600 . G C 4636.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=23.3166;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.61;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,200:205:99:4636,528,0 chrXI 90681 . C T 5799.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.39;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5799,639,0 chrXI 91045 . C T 4582.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=19.1913;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4582,475,0 chrXI 91192 . G A 5566.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=14.3533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-3.053e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:5566,612,0 chrXI 91339 . G A 5304.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.78;SB=-2.951e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5304,550,0 chrXI 91402 . T C 4944.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.6326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4944,543,0 chrXI 91504 . C T 3869.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=16.0743;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.91;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,181:185:99:3869,411,0 chrXI 91565 . C T 3824.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=16.5687;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.48;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3824,402,0 chrXI 91796 . C T 2438 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.66;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2471,270,0 chrXI 91825 . G C 2717 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.74;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2750,303,0 chrXI 92069 . G A 2029 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=18.61;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2062,231,0 chrXI 92125 . T C 2089 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.9213;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=0;QD=19.90;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2122,237,0 chrXI 92145 . T C 1849 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=0;QD=17.61;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1882,210,0 chrXI 92154 . T C 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=6.690;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.17;MQ0=0;MQRankSum=-0.742;QD=18.99;ReadPosRankSum=1.701;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2160,234,0 chrXI 92158 . C T 2196 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.27;MQ0=0;QD=19.78;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2229,234,0 chrXI 92193 . C T 2156 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=19.08;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2189,234,0 chrXI 92202 . A G 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=0;MQRankSum=-1.767;QD=16.86;ReadPosRankSum=2.408;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2039,228,0 chrXI 92251 . G T 1207 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=0;QD=14.54;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1240,138,0 chrXI 92252 . T A 1281 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=0;QD=15.43;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1314,141,0 chrXI 92259 . T A 1099 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=0;MQRankSum=1.091;QD=13.57;ReadPosRankSum=-0.962;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1132,123,0 chrXI 92262 . C G 1065 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;QD=12.68;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1098,123,0 chrXI 92272 . C A 870 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=67.2684;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=10.61;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:903,99,0 chrXI 92313 . T C 1355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.93;MQ0=0;MQRankSum=-0.859;QD=11.02;ReadPosRankSum=1.704;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:1388,159,0 chrXI 92330 . G T 2137 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=14.64;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2170,231,0 chrXI 92358 . A G 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=7.694;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;MQRankSum=-0.271;QD=14.97;ReadPosRankSum=1.709;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2233,261,0 chrXI 92395 . T C 1701 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=16.20;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1734,192,0 chrXI 92422 . C T 988 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=0;QD=13.35;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1021,114,0 chrXI 92424 . C T 1009 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=0;QD=13.82;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1042,117,0 chrXI 92435 . C T 680 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.93;MQ0=0;QD=10.46;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:81:713,81,0 chrXI 92441 . G T 716 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;QD=11.55;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:84:749,84,0 chrXI 92500 . T G 1412 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.17;MQ0=0;QD=18.10;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1445,162,0 chrXI 92507 . G T 1651 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.97;MQ0=0;QD=19.42;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1684,180,0 chrXI 92653 . G A 1267 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=57.1231;MLEAC=2;MLEAF=1.00;MQ=42.59;MQ0=0;QD=17.60;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1300,144,0 chrXI 92679 . T G 1411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;MQRankSum=-0.375;QD=19.07;ReadPosRankSum=1.685;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1444,159,0 chrXI 92948 . A T 3905.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.97;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3905,417,0 chrXI 93041 . G A 5012.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.7917;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.31;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5012,529,0 chrXI 93302 . T G 5947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=244;Dels=0.00;FS=2.574;HaplotypeScore=12.0382;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=0.350;QD=24.37;ReadPosRankSum=2.308;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:2,241:244:99:5947,651,0 chrXI 93349 . G T 5347.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.95;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5347,574,0 chrXI 93352 . G A 5258.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.96;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5258,573,0 chrXI 93391 . C T 4308.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.1193;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.12;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4308,454,0 chrXI 93445 . C T 4296.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.7969;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.44;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:0,217:221:99:4296,465,0 chrXI 93529 . C G 4423.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.79;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4423,486,0 chrXI 93562 . C T 3682.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2933;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.05;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3682,402,0 chrXI 93694 . G T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=15.5415;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.52;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3335,363,0 chrXI 93806 . C G 3042 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.14;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3075,336,0 chrXI 93852 . A G 3107 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3140,357,0 chrXI 93937 . C T 3374.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3374,351,0 chrXI 94000 . A C 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=137;Dels=0.00;FS=2.591;HaplotypeScore=13.9432;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.596;QD=21.53;ReadPosRankSum=2.919;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2982,339,0 chrXI 94374 . C G 1652 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1685,186,0 chrXI 94473 . T C 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.094;DP=144;Dels=0.00;FS=4.984;HaplotypeScore=124.6971;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.577;QD=21.67;ReadPosRankSum=3.361;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:4,140:144:99:3153,342,0 chrXI 94945 . C A 4978.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.7424;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.77;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4978,526,0 chrXI 94985 . C T 4285.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.2755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.32;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4285,451,0 chrXI 95374 . G A 4069.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.0056;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.36;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4069,435,0 chrXI 95430 . C T 3360.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=15.9541;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.87;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3360,351,0 chrXI 96552 . C T 2864 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=7.2187;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;QD=23.87;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2897,315,0 chrXI 96887 . A G 2981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=3.595;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.757;QD=22.08;ReadPosRankSum=1.706;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3014,327,0 chrXI 96908 . T C 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=135;Dels=0.00;FS=5.996;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.008;QD=22.04;ReadPosRankSum=2.948;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:3009,339,0 chrXI 96948 . T C 3198 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.61;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3231,351,0 chrXI 96975 . A G 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.6776;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.560;QD=22.17;ReadPosRankSum=1.711;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3592,396,0 chrXI 97056 . C T 3881.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.5583;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.56;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3881,414,0 chrXI 97113 . T C 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.351;QD=22.22;ReadPosRankSum=1.710;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3511,390,0 chrXI 97251 . T A 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=3.496;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.795;QD=23.14;ReadPosRankSum=1.691;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3933,417,0 chrXI 97392 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=152;Dels=0.00;FS=6.061;HaplotypeScore=11.3690;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.753;QD=22.68;ReadPosRankSum=2.914;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:3,148:152:99:3448,369,0 chrXI 97568 . A G 4271.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.27;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4271,456,0 chrXI 97680 . T C 3135 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.75;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3168,351,0 chrXI 97716 . C T 3658.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.91;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3658,396,0 chrXI 97758 . G A 3996.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3996,435,0 chrXI 97897 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.4836;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.96;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3247,351,0 chrXI 97953 . G A 2987 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.2651;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.52;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3020,315,0 chrXI 98046 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.982;QD=22.48;ReadPosRankSum=1.710;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3575,399,0 chrXI 98085 . A G 3568.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.89;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3568,402,0 chrXI 98124 . G A 2889 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.56;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2922,306,0 chrXI 98175 . G C 1461 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4312;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.26;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1494,171,0 chrXI 98324 . A G 1404 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=21.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1437,162,0 chrXI 98325 . C T 1499 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=23.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1532,162,0 chrXI 98419 . A C 1398 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=19.97;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1431,159,0 chrXI 98422 . A G 1495 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=20.20;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1528,159,0 chrXI 98452 . C T 2447 filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2480,258,0 chrXI 98626 . C T 3921.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5917;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=24.51;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3921,432,0 chrXI 98707 . A C 3978.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.62;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:3978,438,0 chrXI 99008 . T C 6326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=284;Dels=0.00;FS=2.784;HaplotypeScore=22.1661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.109;QD=22.27;ReadPosRankSum=2.423;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:2,279:284:99:6326,708,0 chrXI 99100 . A G 6031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=20.4897;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.408;QD=23.11;ReadPosRankSum=1.719;SB=-3.375e+03 GT:AD:DP:GQ:PL 1/1:1,258:261:99:6031,646,0 chrXI 99224 . T C 7224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=347;Dels=0.00;FS=3.023;HaplotypeScore=19.5919;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.103;QD=20.82;ReadPosRankSum=2.400;SB=-4.384e+03 GT:AD:DP:GQ:PL 1/1:2,343:347:99:7224,789,0 chrXI 99633 . A G 5642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.753;DP=250;Dels=0.00;FS=7.944;HaplotypeScore=24.7138;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.370;QD=22.57;ReadPosRankSum=3.791;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:5,242:250:99:5642,639,0 chrXI 100445 . A G 517 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.88;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:60:550,60,0 chrXI 100670 . T C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.008;QD=25.47;ReadPosRankSum=1.638;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2835,306,0 chrXI 101564 . A G 4985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=230;Dels=0.00;FS=6.669;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.870;QD=21.67;ReadPosRankSum=2.396;SB=-2.705e+03 GT:AD:DP:GQ:PL 1/1:2,228:230:99:4985,532,0 chrXI 102908 . C T 6335.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=12.5851;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.04;SB=-3.443e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:6335,661,0 chrXI 103037 . C T 6741.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=14.2630;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.93;SB=-3.914e+03 GT:AD:DP:GQ:PL 1/1:0,292:294:99:6741,718,0 chrXI 103490 . T C 4509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=234;Dels=0.00;FS=9.429;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-1.485;QD=19.27;ReadPosRankSum=2.944;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:3,231:234:99:4509,507,0 chrXI 103493 . C T 4478.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.47;SB=-2.972e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4478,489,0 chrXI 103508 . T C 4608.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=19.61;SB=-3.087e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4608,510,0 chrXI 103649 . G A 5080.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=19.8630;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.01;SB=-3.507e+03 GT:AD:DP:GQ:PL 1/1:0,278:282:99:5080,532,0 chrXI 103811 . C T 6053.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=20.6357;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.50;SB=-3.475e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:6053,646,0 chrXI 103928 . A G 5125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=212;Dels=0.00;FS=9.344;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.701;QD=24.17;ReadPosRankSum=2.939;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:3,209:212:99:5125,561,0 chrXI 104318 . G T 4725.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.2687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4725,499,0 chrXI 104492 . T C 5908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=257;Dels=0.00;FS=6.065;HaplotypeScore=15.1248;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.063;QD=22.99;ReadPosRankSum=2.941;SB=-3.333e+03 GT:AD:DP:GQ:PL 1/1:3,253:257:99:5908,634,0 chrXI 104549 . C T 5941.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=19.1988;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.55;SB=-3.199e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5941,628,0 chrXI 105107 . C A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3944,426,0 chrXI 105188 . C T 5082.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.2662;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.89;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5082,541,0 chrXI 105974 . A G 4362.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.2862;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.07;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4362,468,0 chrXI 106209 . T C 5825.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.27;SB=-2.951e+03 GT:AD:DP:GQ:PL 1/1:0,237:240:99:5825,625,0 chrXI 106700 . C T 2618 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.80;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2651,288,0 chrXI 106896 . A G 2074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=90;Dels=0.00;FS=3.005;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.711;QD=23.04;ReadPosRankSum=2.340;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2107,234,0 chrXI 107762 . T A 5412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=226;Dels=0.00;FS=3.329;HaplotypeScore=13.6750;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.303;QD=23.95;ReadPosRankSum=1.701;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:5412,577,0 chrXI 107879 . C T 4742.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4742,496,0 chrXI 108780 . T G 2160 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=18.78;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2193,255,0 chrXI 108782 . T C 2139 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=19.62;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2172,246,0 chrXI 108816 . T C 2186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=110;Dels=0.00;FS=3.014;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.682;QD=19.87;ReadPosRankSum=2.092;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2219,243,0 chrXI 108841 . T G 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=104;Dels=0.00;FS=10.224;HaplotypeScore=2.6961;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.602;QD=19.68;ReadPosRankSum=2.933;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2080,225,0 chrXI 109080 . G C 2396 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=18.57;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,124:129:99:2429,264,0 chrXI 109538 . C T 4345.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.61;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4345,460,0 chrXI 109648 . A T 2575 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2608,279,0 chrXI 109778 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.54;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2625,279,0 chrXI 109838 . C G 3307.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.32;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3307,375,0 chrXI 110429 . A G 3192 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.18;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3225,372,0 chrXI 110470 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3249,348,0 chrXI 110746 . G A 3147 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.5316;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.31;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3180,339,0 chrXI 110832 . G C 3169 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=21.71;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3202,339,0 chrXI 110834 . T C 3351.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=22.49;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3351,354,0 chrXI 111034 . T C 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=151;Dels=0.00;FS=6.907;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;MQRankSum=-0.680;QD=21.10;ReadPosRankSum=2.417;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3219,348,0 chrXI 111039 . T G 3081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=3.424;HaplotypeScore=4.3439;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;MQRankSum=-0.545;QD=21.55;ReadPosRankSum=1.684;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3114,330,0 chrXI 111187 . C T 3802.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=23.61;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3802,399,0 chrXI 111232 . G A 2668 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=17.32;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2701,294,0 chrXI 111236 . G A 2739 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=19.15;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2772,291,0 chrXI 111256 . T C 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;MQRankSum=-0.787;QD=14.60;ReadPosRankSum=1.659;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2121,234,0 chrXI 111265 . A G 1923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=3.933;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;MQRankSum=0.283;QD=13.64;ReadPosRankSum=1.683;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:1956,225,0 chrXI 111552 . C T 4223.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=25.59;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4223,447,0 chrXI 111679 . C T 3661.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.77;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3661,385,0 chrXI 111701 . C T 4050.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.2513;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.68;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4050,427,0 chrXI 111787 . T G 3695.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.7938;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.48;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3695,399,0 chrXI 112039 . T C 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=148;Dels=0.00;FS=3.015;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-0.095;QD=22.60;ReadPosRankSum=2.364;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:3,141:148:99:3345,372,0 chrXI 112062 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=24.26;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3300,342,0 chrXI 112116 . G A 2279 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.91;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2312,249,0 chrXI 112117 . G A 2351 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.77;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2384,249,0 chrXI 113110 . C A 1832 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1865,207,0 chrXI 113142 . A T 1956 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.79;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1989,207,0 chrXI 113688 . C T 3045 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.2091;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.07;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3078,318,0 chrXI 113884 . G A 3060 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.48;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3093,333,0 chrXI 113998 . C T 3923.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.99;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3923,420,0 chrXI 114199 . A G 5192.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.8598;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.70;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5192,556,0 chrXI 114400 . C T 6278.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=12.5897;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.24;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:6278,652,0 chrXI 114774 . C T 44.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=5.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:8:9:77,9,0 chrXI 114933 . A G 1769 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=26.40;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1802,195,0 chrXI 115293 . T C 1815 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1848,195,0 chrXI 115499 . A G 1208 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.79;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1241,144,0 chrXI 115557 . G A 1465 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.16;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1498,159,0 chrXI 115612 . C G 1773 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=24.97;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1806,192,0 chrXI 115636 . T C 2009 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.64;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2042,222,0 chrXI 115680 . G A 2651 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.55;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2684,279,0 chrXI 115797 . A G 3066 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.6513;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3099,357,0 chrXI 115863 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.46;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3498,393,0 chrXI 115888 . C G 3916.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.59;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3916,423,0 chrXI 115962 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=146;Dels=0.00;FS=7.006;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.466;QD=24.49;ReadPosRankSum=2.348;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3576,384,0 chrXI 115995 . G A 3699.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.34;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3699,387,0 chrXI 116904 . C T 5127.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.3904;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5127,561,0 chrXI 117198 . A G 4672.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.24;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,214:220:99:4672,531,0 chrXI 117695 . A G 4696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.3434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.780;QD=21.15;ReadPosRankSum=1.716;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:4696,504,0 chrXI 118015 . A G 3864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=184;Dels=0.00;FS=3.648;HaplotypeScore=7.8174;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.524;QD=21.00;ReadPosRankSum=1.656;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3864,444,0 chrXI 118487 . C A 5033.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.4194;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.31;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5033,523,0 chrXI 118549 . C A 3977.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.85;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3977,429,0 chrXI 118559 . T C 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=4.082;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.307;QD=20.34;ReadPosRankSum=1.696;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:3905,444,0 chrXI 118745 . G A 4357.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.94;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4357,442,0 chrXI 118759 . T C 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.397;QD=21.94;ReadPosRankSum=1.669;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3642,396,0 chrXI 119116 . C T 5265.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=8.6806;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.40;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5265,550,0 chrXI 119177 . G A 4900.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.9792;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.37;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4900,534,0 chrXI 119221 . T C 5111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.450;QD=20.69;ReadPosRankSum=1.690;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:1,245:247:99:5111,576,0 chrXI 119238 . G A 6515.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=6.6456;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.10;SB=-3.690e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:6515,679,0 chrXI 119302 . A G 6187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-1.127;QD=22.75;ReadPosRankSum=1.719;SB=-3.474e+03 GT:AD:DP:GQ:PL 1/1:1,268:272:99:6187,667,0 chrXI 119339 . T C 5500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=262;Dels=0.00;FS=2.999;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-0.465;QD=20.99;ReadPosRankSum=2.393;SB=-3.252e+03 GT:AD:DP:GQ:PL 1/1:2,259:262:99:5500,592,0 chrXI 119350 . G T 5322.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=9.0582;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.55;SB=-3.224e+03 GT:AD:DP:GQ:PL 1/1:0,254:259:99:5322,576,0 chrXI 119431 . C T 5858.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=13.6015;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.06;SB=-3.118e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:5858,613,0 chrXI 120175 . C T 5265.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5265,559,0 chrXI 120563 . T C 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.433;QD=23.49;ReadPosRankSum=1.711;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3805,411,0 chrXI 120740 . A G 4708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=208;Dels=0.00;FS=3.205;HaplotypeScore=15.9428;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-1.394;QD=22.63;ReadPosRankSum=1.715;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:1,204:208:99:4708,537,0 chrXI 120989 . T C 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=149;Dels=0.00;FS=7.458;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.141;QD=20.73;ReadPosRankSum=2.383;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3122,336,0 chrXI 120995 . A T 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=155;Dels=0.00;FS=5.910;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-0.539;QD=20.10;ReadPosRankSum=2.929;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3148,324,0 chrXI 121247 . T C 4613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.4620;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-1.176;QD=23.78;ReadPosRankSum=1.660;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4613,507,0 chrXI 121508 . T C 3392.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.88;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,149:154:99:3392,375,0 chrXI 122192 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.30;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2831,300,0 chrXI 122779 . C T 5062.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.5905;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.11;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5062,529,0 chrXI 122945 . C T 4245.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4245,442,0 chrXI 123123 . T C 3951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=6.703;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.451;QD=23.80;ReadPosRankSum=2.405;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3951,426,0 chrXI 123302 . A C 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.080;QD=22.93;ReadPosRankSum=1.679;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:2,129:135:99:3129,339,0 chrXI 123413 . G C 3071 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.09;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3104,339,0 chrXI 123578 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=24.44;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3642,376,0 chrXI 123611 . A G 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=131;Dels=0.00;FS=2.632;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.441;QD=21.94;ReadPosRankSum=2.412;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2907,318,0 chrXI 123617 . A G 2886 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=22.03;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2919,318,0 chrXI 123848 . A G 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=169;Dels=0.00;FS=17.757;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;MQRankSum=-0.101;QD=22.01;ReadPosRankSum=2.959;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3719,402,0 chrXI 123855 . G A 3551.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=19.84;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3551,396,0 chrXI 123867 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=19.02;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3266,375,0 chrXI 123889 . T G 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=0.633;QD=19.41;ReadPosRankSum=2.399;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:3805,411,0 chrXI 123941 . T C 5243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.370;DP=230;Dels=0.00;FS=5.232;HaplotypeScore=14.5552;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-0.171;QD=22.80;ReadPosRankSum=3.081;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:4,226:230:99:5243,579,0 chrXI 124007 . T C 4844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=227;Dels=0.00;FS=3.228;HaplotypeScore=9.6561;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.177;QD=21.34;ReadPosRankSum=1.624;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:1,224:227:99:4844,540,0 chrXI 124022 . T C 4212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=229;Dels=0.00;FS=3.536;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=0.395;QD=18.39;ReadPosRankSum=1.686;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:4212,483,0 chrXI 124031 . A G 4360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=8.4431;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;MQRankSum=0.486;QD=19.04;ReadPosRankSum=1.717;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:4360,492,0 chrXI 124073 . A G 4211.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=18.55;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4211,474,0 chrXI 124109 . T C 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=217;Dels=0.00;FS=5.380;HaplotypeScore=16.5256;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.696;QD=19.40;ReadPosRankSum=1.716;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,213:217:99:4209,480,0 chrXI 124463 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.95;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3611,378,0 chrXI 124690 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.87;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3509,369,0 chrXI 124741 . A G 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.382;DP=158;Dels=0.00;FS=8.519;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.327;QD=23.13;ReadPosRankSum=3.326;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:4,154:158:99:3654,390,0 chrXI 124920 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.28;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2915,303,0 chrXI 125057 . C T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.3864;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.90;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3776,402,0 chrXI 125147 . G A 4091.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3692;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.64;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4091,424,0 chrXI 125207 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=162;Dels=0.00;FS=3.120;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.606;QD=19.93;ReadPosRankSum=1.126;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3261,372,0 chrXI 125303 . G A 5237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=213;Dels=0.00;FS=3.263;HaplotypeScore=13.4822;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.474;QD=24.59;ReadPosRankSum=1.503;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:5237,541,0 chrXI 125453 . T A 3930.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.56;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3930,403,0 chrXI 125483 . T A 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=4.856;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.600;QD=22.54;ReadPosRankSum=1.688;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3517,375,0 chrXI 125562 . A G 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=157;Dels=0.00;FS=2.943;HaplotypeScore=13.5408;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.531;QD=23.41;ReadPosRankSum=2.418;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:3675,399,0 chrXI 125651 . T A 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=139;Dels=0.00;FS=6.243;HaplotypeScore=10.9281;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.876;QD=22.87;ReadPosRankSum=2.344;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3212,336,0 chrXI 125800 . A G 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=136;Dels=0.00;FS=5.780;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.422;QD=25.02;ReadPosRankSum=2.934;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3403,366,0 chrXI 125830 . A G 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.587;QD=24.10;ReadPosRankSum=1.703;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2901,309,0 chrXI 126208 . T C 6270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.013;DP=280;Dels=0.00;FS=14.423;HaplotypeScore=24.3862;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.857;QD=22.39;ReadPosRankSum=4.146;SB=-3.049e+03 GT:AD:DP:GQ:PL 1/1:6,273:280:99:6270,702,0 chrXI 126748 . A G 5954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.623;DP=260;Dels=0.00;FS=10.848;HaplotypeScore=18.2451;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.318;QD=22.90;ReadPosRankSum=3.763;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:5,251:260:99:5954,631,0 chrXI 127159 . C T 2921 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.18;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2954,309,0 chrXI 127196 . G A 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=120;Dels=0.00;FS=5.623;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=2.101;QD=19.44;ReadPosRankSum=2.908;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2366,255,0 chrXI 127198 . A T 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.638;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=0.460;QD=18.42;ReadPosRankSum=3.664;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:5,115:120:99:2244,249,0 chrXI 127208 . G A 2359 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.0749;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=19.34;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2392,261,0 chrXI 127867 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3609,381,0 chrXI 128164 . T C 3617.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.79;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3617,405,0 chrXI 128185 . A G 3612.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=20.41;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3612,384,0 chrXI 128195 . A C 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=158;Dels=0.00;FS=2.691;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.837;QD=18.46;ReadPosRankSum=2.403;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:2949,339,0 chrXI 128646 . C T 6234.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=16.1551;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:6234,649,0 chrXI 129022 . T C 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=3.586;HaplotypeScore=10.0476;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.374;QD=21.94;ReadPosRankSum=1.664;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3357,381,0 chrXI 129198 . C G 4759.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.4618;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.66;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4759,510,0 chrXI 129511 . A G 3637.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.87;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3637,417,0 chrXI 129623 . C A 2324 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=18.30;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2357,258,0 chrXI 129844 . A G 3755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=182;Dels=0.00;FS=8.625;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.948;QD=20.63;ReadPosRankSum=2.354;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:3755,411,0 chrXI 129862 . G A 3667.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.26;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3667,393,0 chrXI 130226 . C T 3526.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.99;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3526,367,0 chrXI 130584 . G T 3450.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.40;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3450,375,0 chrXI 130801 . G A 4818.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.58;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4818,496,0 chrXI 131399 . T C 2942 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2975,336,0 chrXI 131862 . C T 4275.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.8445;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.36;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4275,453,0 chrXI 132074 . A G 3475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.5318;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-1.084;QD=22.13;ReadPosRankSum=1.687;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3475,393,0 chrXI 132152 . G A 2676 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=22.49;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2709,288,0 chrXI 132155 . C T 2604 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=21.88;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2637,279,0 chrXI 132251 . T A 2686 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=21.84;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2719,282,0 chrXI 132257 . C T 2758 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=21.55;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2791,291,0 chrXI 132287 . T C 2300 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=18.40;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2333,255,0 chrXI 132298 . A G 2308 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=17.62;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2341,255,0 chrXI 132383 . C T 3050 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9498;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.26;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3083,336,0 chrXI 132408 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=20.72;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2582,276,0 chrXI 132423 . C T 2214 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=19.77;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2247,243,0 chrXI 132442 . G A 1983 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=18.36;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2016,216,0 chrXI 132521 . G A 3173 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.99;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3206,339,0 chrXI 132731 . T C 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=149;Dels=0.00;FS=3.040;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.074;QD=23.53;ReadPosRankSum=2.417;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3506,381,0 chrXI 132985 . A G 4949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=215;Dels=0.00;FS=3.412;HaplotypeScore=7.2141;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.378;QD=23.02;ReadPosRankSum=1.587;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4949,534,0 chrXI 133227 . T C 3525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=169;Dels=0.00;FS=3.222;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-1.382;QD=20.86;ReadPosRankSum=1.670;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3525,396,0 chrXI 133251 . T C 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=166;Dels=0.00;FS=5.907;HaplotypeScore=7.3074;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.638;QD=20.40;ReadPosRankSum=2.835;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:3,161:166:99:3387,369,0 chrXI 133472 . C A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.66;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3683,399,0 chrXI 133596 . C G 2414 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.2897;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.99;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2447,264,0 chrXI 133597 . A T 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1083;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.996;QD=21.17;ReadPosRankSum=1.701;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2425,264,0 chrXI 133744 . C T 3054 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.6844;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.46;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3087,339,0 chrXI 133799 . G C 3714.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=25.09;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3714,399,0 chrXI 133991 . G A 2925 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.50;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2958,315,0 chrXI 134323 . C T 1492 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=17.98;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1525,168,0 chrXI 134344 . C T 1534 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=19.92;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1567,168,0 chrXI 135083 . A G 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=185;Dels=0.00;FS=2.938;HaplotypeScore=15.0533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.278;QD=21.96;ReadPosRankSum=2.395;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:2,179:185:99:4062,444,0 chrXI 135341 . T C 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=7.152;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.639;QD=21.68;ReadPosRankSum=2.353;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3317,375,0 chrXI 135691 . C G 4192.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.66;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4192,447,0 chrXI 135796 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.8398;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.49;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3430,355,0 chrXI 136140 . T A 522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=4.9365;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.201;QD=16.84;ReadPosRankSum=2.131;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:2,29:31:47:555,47,0 chrXI 136268 . C T 2166 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=18.83;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2199,225,0 chrXI 136273 . T A 2148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.1330;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=0.844;QD=18.20;ReadPosRankSum=2.387;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2181,231,0 chrXI 136395 . C G 3615.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.88;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3615,387,0 chrXI 136401 . C T 3349.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.89;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3349,369,0 chrXI 136421 . A C 3304.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.02;FS=0.000;HaplotypeScore=14.1979;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.18;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3304,360,0 chrXI 136588 . T C 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=167;Dels=0.00;FS=3.036;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=1.170;QD=24.13;ReadPosRankSum=2.391;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4030,432,0 chrXI 136692 . G A 3189 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.28;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3222,339,0 chrXI 136700 . A C 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.310;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=1.681;QD=21.35;ReadPosRankSum=1.706;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2937,330,0 chrXI 136782 . G A 3135 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.88;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3168,345,0 chrXI 136836 . G T 4091.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.0702;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.23;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4091,438,0 chrXI 136860 . A G 4369.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.74;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4369,471,0 chrXI 136898 . T C 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=177;Dels=0.00;FS=2.940;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-2.017;QD=22.80;ReadPosRankSum=2.380;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:4036,438,0 chrXI 136931 . A C 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=138;Dels=0.00;FS=6.575;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-1.309;QD=23.29;ReadPosRankSum=2.378;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3247,354,0 chrXI 137272 . G A 2315 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.62;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2348,249,0 chrXI 137449 . G A 2212 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2245,234,0 chrXI 137613 . T G 2294 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.64;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2327,252,0 chrXI 137708 . A G 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.199;QD=24.38;ReadPosRankSum=1.703;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2886,318,0 chrXI 137740 . A G 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.8515;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.090;QD=22.88;ReadPosRankSum=1.702;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2687,285,0 chrXI 138163 . A G 2862 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.44;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2895,315,0 chrXI 138169 . T C 2794 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.96;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2827,309,0 chrXI 138829 . A G 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=168;Dels=0.00;FS=3.006;HaplotypeScore=7.1647;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.475;QD=21.04;ReadPosRankSum=2.362;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3534,399,0 chrXI 138955 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.72;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2943,312,0 chrXI 139006 . T A 2586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=121;Dels=0.00;FS=3.838;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=0.358;QD=21.37;ReadPosRankSum=1.675;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2619,279,0 chrXI 139012 . A G 2603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=2.940;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-0.421;QD=22.83;ReadPosRankSum=0.831;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2636,285,0 chrXI 139532 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.71;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3287,360,0 chrXI 140593 . G A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.5662;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.09;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3613,384,0 chrXI 140833 . T G 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=1.464;QD=23.86;ReadPosRankSum=1.705;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3135,339,0 chrXI 141102 . G T 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4626;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;MQRankSum=-1.147;QD=20.66;ReadPosRankSum=1.610;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2987,324,0 chrXI 141104 . A G 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.4626;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;MQRankSum=-0.098;QD=20.70;ReadPosRankSum=1.635;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2973,318,0 chrXI 141113 . C T 2640 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;QD=18.59;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2673,285,0 chrXI 141122 . A G 2526 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=17.54;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2559,279,0 chrXI 141163 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=19.47;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3330,345,0 chrXI 141217 . A C 3215.99 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1925;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.58;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,145:149:99:3249,354,0 chrXI 141227 . G A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.44;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3366,372,0 chrXI 141291 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.68;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3264,372,0 chrXI 141507 . A T 1066 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=15.45;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1099,129,0 chrXI 141805 . G C 4896.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.46;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:4896,525,0 chrXI 141809 . A G 4967.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.68;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4967,523,0 chrXI 141842 . A G 4960.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=10.6459;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.38;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:4960,534,0 chrXI 142310 . A G 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=16.0095;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.039;QD=17.38;ReadPosRankSum=1.693;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,175:182:99:3196,363,0 chrXI 142523 . T C 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=3.546;HaplotypeScore=10.3998;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-1.100;QD=16.66;ReadPosRankSum=1.694;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3066,345,0 chrXI 142535 . T C 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.3555;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.021;QD=17.46;ReadPosRankSum=1.067;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:3387,372,0 chrXI 142780 . C T 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2896;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=1;MQRankSum=2.413;QD=21.46;ReadPosRankSum=2.302;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2908,315,0 chrXI 142986 . A G 2939 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.51;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2972,330,0 chrXI 143177 . G A 3864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.363;DP=171;Dels=0.00;FS=3.248;HaplotypeScore=10.4790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.277;QD=22.60;ReadPosRankSum=0.420;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3864,408,0 chrXI 143668 . C T 3652.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.54;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3652,384,0 chrXI 143713 . C T 4399.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.04;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4399,454,0 chrXI 143731 . A T 4253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.0373;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.193;QD=22.99;ReadPosRankSum=0.524;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4253,450,0 chrXI 143785 . A T 4306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=3.460;HaplotypeScore=8.1798;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-1.624;QD=22.31;ReadPosRankSum=1.714;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4306,459,0 chrXI 143865 . T C 4825.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.6780;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.25;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4825,528,0 chrXI 144058 . G A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.66;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3336,346,0 chrXI 144069 . A G 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.563;QD=21.96;ReadPosRankSum=1.710;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3514,390,0 chrXI 144520 . A T 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=159;Dels=0.00;FS=4.428;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=43.22;MQ0=1;MQRankSum=-1.732;QD=22.43;ReadPosRankSum=1.666;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3567,375,0 chrXI 144571 . T C 3005 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;QD=18.66;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3038,330,0 chrXI 144577 . C T 2880 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=17.56;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2913,312,0 chrXI 144619 . T A 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.199;DP=195;Dels=0.00;FS=13.305;HaplotypeScore=8.9200;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=0.724;QD=14.29;ReadPosRankSum=3.316;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:4,190:195:99:2820,291,0 chrXI 144646 . T C 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.051;DP=181;Dels=0.00;FS=14.818;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=0.622;QD=14.09;ReadPosRankSum=3.025;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:4,177:181:99:2584,282,0 chrXI 144700 . C T 1459.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.863;DP=220;Dels=0.00;FS=6.421;HaplotypeScore=116.2646;MLEAC=1;MLEAF=0.500;MQ=41.17;MQ0=0;MQRankSum=-3.048;QD=6.63;ReadPosRankSum=3.812;SB=-1.109e+03 GT:AD:DP:GQ:PL 0/1:65,151:220:99:1489,0,735 chrXI 144718 . T C 682.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.379;DP=225;Dels=0.00;FS=33.941;HaplotypeScore=77.5999;MLEAC=1;MLEAF=0.500;MQ=40.84;MQ0=0;MQRankSum=-2.841;QD=3.03;ReadPosRankSum=-4.598;SB=-3.570e+02 GT:AD:DP:GQ:PL 0/1:151,74:225:99:712,0,1834 chrXI 144760 . A G 3733.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.629;DP=347;Dels=0.00;FS=45.622;HaplotypeScore=47.4237;MLEAC=1;MLEAF=0.500;MQ=40.95;MQ0=3;MQRankSum=5.061;QD=10.76;ReadPosRankSum=7.698;SB=-2.085e+03 GT:AD:DP:GQ:PL 0/1:116,230:347:21:3733,0,21 chrXI 144799 . A G 56.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.899;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=73.8705;MLEAC=1;MLEAF=0.500;MQ=39.29;MQ0=3;MQRankSum=-5.947;QD=0.17;ReadPosRankSum=3.948;SB=-6.230e+02 GT:AD:DP:GQ:PL 0/1:235,92:328:86:86,0,3320 chrXI 144802 . A T 57.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.293;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=71.1061;MLEAC=1;MLEAF=0.500;MQ=39.40;MQ0=3;MQRankSum=-4.006;QD=0.18;ReadPosRankSum=4.795;SB=-6.940e+02 GT:AD:DP:GQ:PL 0/1:231,92:324:87:87,0,3057 chrXI 144803 . A T 73.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=72.6834;MLEAC=1;MLEAF=0.500;MQ=39.48;MQ0=3;MQRankSum=-3.692;QD=0.22;ReadPosRankSum=4.650;SB=-7.250e+02 GT:AD:DP:GQ:PL 0/1:230,95:325:99:103,0,3249 chrXI 144814 . A G 145.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.517;DP=312;Dels=0.00;FS=73.876;HaplotypeScore=72.1340;MLEAC=1;MLEAF=0.500;MQ=38.73;MQ0=3;MQRankSum=-1.278;QD=0.46;ReadPosRankSum=-2.258;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:254,58:312:99:175,0,2820 chrXI 144844 . C T 650.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.064;DP=279;Dels=0.00;FS=19.619;HaplotypeScore=114.1284;MLEAC=1;MLEAF=0.500;MQ=37.11;MQ0=2;MQRankSum=-0.930;QD=2.33;ReadPosRankSum=-1.246;SB=-2.770e+02 GT:AD:DP:GQ:PL 0/1:216,63:279:99:680,0,1730 chrXI 144850 . T C 982.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.783;DP=269;Dels=0.00;FS=13.175;HaplotypeScore=85.8954;MLEAC=1;MLEAF=0.500;MQ=36.72;MQ0=2;MQRankSum=-3.728;QD=3.65;ReadPosRankSum=-1.697;SB=-8.260e+02 GT:AD:DP:GQ:PL 0/1:114,153:269:99:1012,0,994 chrXI 144862 . T C 2339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.262;DP=260;Dels=0.00;FS=13.003;HaplotypeScore=29.0898;MLEAC=2;MLEAF=1.00;MQ=36.28;MQ0=2;MQRankSum=-0.092;QD=9.00;ReadPosRankSum=2.866;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:20,240:260:99:2372,118,0 chrXI 144880 . C T 1191.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;DP=291;Dels=0.00;FS=19.648;HaplotypeScore=38.2435;MLEAC=1;MLEAF=0.500;MQ=38.67;MQ0=1;MQRankSum=-2.762;QD=4.09;ReadPosRankSum=-3.367;SB=-2.179e+03 GT:AD:DP:GQ:PL 0/1:92,199:291:99:1221,0,1129 chrXI 144883 . G A 1213.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.335;DP=299;Dels=0.00;FS=8.523;HaplotypeScore=38.2435;MLEAC=1;MLEAF=0.500;MQ=38.95;MQ0=1;MQRankSum=-5.380;QD=4.06;ReadPosRankSum=-1.785;SB=-2.092e+03 GT:AD:DP:GQ:PL 0/1:102,197:299:99:1243,0,1246 chrXI 144889 . T C 3145 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=312;Dels=0.03;FS=2.963;HaplotypeScore=39.6263;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;MQRankSum=-1.637;QD=10.08;ReadPosRankSum=2.433;SB=-3.251e+03 GT:AD:DP:GQ:PL 1/1:2,300:303:99:3178,351,0 chrXI 144916 . C T 3712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=6.139;DP=319;Dels=0.00;FS=19.774;HaplotypeScore=56.8115;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;MQRankSum=2.939;QD=11.64;ReadPosRankSum=2.394;SB=-3.428e+03 GT:AD:DP:GQ:PL 1/1:17,301:319:99:3712,296,0 chrXI 144919 . C T 167.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.226;DP=308;Dels=0.00;FS=13.586;HaplotypeScore=43.5210;MLEAC=1;MLEAF=0.500;MQ=44.40;MQ0=0;MQRankSum=-3.877;QD=0.54;ReadPosRankSum=-5.293;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:258,50:308:99:197,0,2727 chrXI 145495 . T C 2135 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.57;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2168,231,0 chrXI 145622 . C T 462 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.2003;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=15.93;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,28:29:51:495,51,0 chrXI 145687 . A T 516 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=25.80;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:57:549,57,0 chrXI 145747 . C T 358 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=17.05;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:42:391,42,0 chrXI 145779 . T C 1039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-1.480;QD=18.89;ReadPosRankSum=1.669;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1072,114,0 chrXI 145797 . G A 1075 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=17.92;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1108,117,0 chrXI 145814 . T C 1180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.162;QD=15.73;ReadPosRankSum=1.686;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1213,132,0 chrXI 145832 . A G 1393 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=17.20;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1426,150,0 chrXI 145859 . G A 1124 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=15.40;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1157,120,0 chrXI 145877 . A G 1266 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=15.25;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1299,141,0 chrXI 145993 . G C 5885.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=25.15;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,230:234:99:5885,642,0 chrXI 146213 . A G 5619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=15.0379;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.194;QD=22.30;ReadPosRankSum=1.691;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:1,250:252:99:5619,607,0 chrXI 146436 . T C 4550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=208;Dels=0.00;FS=5.662;HaplotypeScore=15.3406;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;MQRankSum=0.647;QD=21.88;ReadPosRankSum=2.947;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:4550,510,0 chrXI 146489 . G A 4279.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=24.88;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4279,442,0 chrXI 146583 . A G 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4726;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=0;MQRankSum=-1.388;QD=18.07;ReadPosRankSum=1.712;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3123,339,0 chrXI 146593 . A G 2532 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=32.50;MQ0=0;QD=16.44;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2565,285,0 chrXI 146595 . T C 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=154;Dels=0.00;FS=2.777;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;MQRankSum=1.141;QD=16.40;ReadPosRankSum=1.013;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:2558,273,0 chrXI 146606 . T C 2559 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;QD=14.96;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2592,303,0 chrXI 146631 . A C 2390 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=0;QD=15.93;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2423,264,0 chrXI 146650 . A T 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.230;DP=176;Dels=0.01;FS=2.416;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=39.11;MQ0=0;MQRankSum=1.103;QD=17.52;ReadPosRankSum=3.410;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:4,171:175:99:3117,327,0 chrXI 146689 . A T 3369.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=5.1621;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=21.19;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3369,357,0 chrXI 146743 . A T 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=128;Dels=0.00;FS=9.555;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=-0.835;QD=23.59;ReadPosRankSum=2.866;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:3053,327,0 chrXI 146875 . T C 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;MQRankSum=-0.849;QD=17.41;ReadPosRankSum=1.686;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2627,282,0 chrXI 146915 . A G 2116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=4.886;HaplotypeScore=125.9633;MLEAC=2;MLEAF=1.00;MQ=33.85;MQ0=0;MQRankSum=-0.270;QD=13.74;ReadPosRankSum=1.710;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2149,240,0 chrXI 146918 . C T 82.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.190;DP=130;Dels=0.01;FS=13.023;HaplotypeScore=3.9461;MLEAC=2;MLEAF=1.00;MQ=34.36;MQ0=0;MQRankSum=4.393;QD=0.63;ReadPosRankSum=-4.445;SB=-5.626e+01 GT:AD:DP:GQ:PL 1/1:122,7:129:15:115,15,0 chrXI 147072 . T C 4572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=203;Dels=0.00;FS=3.687;HaplotypeScore=10.4764;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=0.474;QD=22.52;ReadPosRankSum=1.594;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4572,490,0 chrXI 147232 . T C 3116 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.42;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3149,336,0 chrXI 147261 . C T 3332.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4159;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.46;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3332,354,0 chrXI 147343 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4322;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.90;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2560,276,0 chrXI 147354 . G T 2113 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.06;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2146,234,0 chrXI 147360 . C T 2246 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.20;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2279,237,0 chrXI 147421 . G C 1986 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=17.58;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2019,216,0 chrXI 147443 . A T 2385 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.71;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2418,255,0 chrXI 147476 . G C 2696 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.5184;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.68;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2729,300,0 chrXI 147617 . G A 3541.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=23.61;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3541,378,0 chrXI 147885 . T C 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=3.772;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=-1.533;QD=21.63;ReadPosRankSum=1.712;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3763,408,0 chrXI 147892 . T A 3717.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=21.49;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3717,390,0 chrXI 147911 . G T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.58;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3457,366,0 chrXI 147977 . T C 4198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=3.289;HaplotypeScore=9.0602;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.360;QD=23.72;ReadPosRankSum=1.713;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4198,477,0 chrXI 148038 . G A 3152 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.68;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3185,345,0 chrXI 148063 . C T 3304.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.27;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3304,348,0 chrXI 148157 . T C 3993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=3.318;HaplotypeScore=7.4466;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-1.711;QD=24.50;ReadPosRankSum=1.689;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3993,438,0 chrXI 148221 . G T 4022.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.7961;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.46;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4022,426,0 chrXI 148284 . T C 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=3.501;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.329;QD=24.61;ReadPosRankSum=1.698;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2592,276,0 chrXI 148560 . G T 3102 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.62;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3135,333,0 chrXI 148617 . T A 3483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=0.466;QD=24.02;ReadPosRankSum=1.637;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3483,361,0 chrXI 148629 . G T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=23.13;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3446,360,0 chrXI 148757 . A T 3010 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3043,318,0 chrXI 148801 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=4.067;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.566;QD=22.74;ReadPosRankSum=1.704;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2875,327,0 chrXI 148894 . T C 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=136;Dels=0.00;FS=6.101;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=1.978;QD=21.76;ReadPosRankSum=2.918;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:3,132:136:99:2993,327,0 chrXI 148938 . A G 2845 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=23.71;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2878,303,0 chrXI 148984 . G T 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-1.732;QD=21.66;ReadPosRankSum=1.143;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2199,218,0 chrXI 149114 . T G 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=145;Dels=0.00;FS=6.173;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;MQRankSum=1.681;QD=18.75;ReadPosRankSum=2.381;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:2752,300,0 chrXI 149118 . C T 2646 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=18.25;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2679,294,0 chrXI 149131 . G A 2546 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;QD=17.20;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2579,285,0 chrXI 149142 . T C 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=151;Dels=0.00;FS=2.564;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;MQRankSum=-2.474;QD=15.91;ReadPosRankSum=2.940;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:2436,267,0 chrXI 149176 . T C 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=151;Dels=0.00;FS=2.570;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;MQRankSum=-1.450;QD=16.26;ReadPosRankSum=2.953;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:2488,273,0 chrXI 149301 . T C 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.472;QD=23.59;ReadPosRankSum=1.575;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3633,396,0 chrXI 149328 . G A 4135.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=23.36;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4135,432,0 chrXI 149344 . A G 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=3.151;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=0.350;QD=21.29;ReadPosRankSum=1.677;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4003,459,0 chrXI 149388 . A C 4960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=232;Dels=0.00;FS=9.432;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.416;QD=21.38;ReadPosRankSum=2.935;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:3,229:232:99:4960,555,0 chrXI 149548 . A G 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.291;DP=176;Dels=0.00;FS=8.628;HaplotypeScore=6.8504;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-1.474;QD=22.78;ReadPosRankSum=3.390;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:4,172:176:99:4010,450,0 chrXI 149765 . G A 4088.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=20.1817;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.49;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4088,435,0 chrXI 149835 . G T 4224.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.42;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4224,445,0 chrXI 150554 . G A 4763.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.7063;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.12;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4763,511,0 chrXI 150866 . C T 3585.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.13;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3585,375,0 chrXI 150910 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3762,399,0 chrXI 151229 . G T 2073 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.92;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2106,216,0 chrXI 151420 . A T 3047 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.57;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3080,327,0 chrXI 151866 . G T 3060 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.54;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3093,318,0 chrXI 152116 . T A 3051 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.29;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3084,321,0 chrXI 152140 . G A 3001 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.63;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3034,324,0 chrXI 152290 . G A 4260.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.78;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4260,442,0 chrXI 152294 . A G 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=193;Dels=0.00;FS=6.272;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=0.274;QD=19.30;ReadPosRankSum=2.399;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:3725,396,0 chrXI 152402 . G A 4788.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.4946;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.69;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4788,525,0 chrXI 152485 . A C 5360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=234;Dels=0.00;FS=5.916;HaplotypeScore=18.9335;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.318;QD=22.91;ReadPosRankSum=2.944;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:3,231:234:99:5360,577,0 chrXI 152571 . T G 4432.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.3991;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=24.90;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4432,474,0 chrXI 152614 . A G 4266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=3.054;HaplotypeScore=4.0258;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.970;QD=21.33;ReadPosRankSum=1.663;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4266,486,0 chrXI 152632 . C T 4895.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=23.09;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4895,514,0 chrXI 152688 . A G 2992 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=17.70;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3025,327,0 chrXI 152690 . G A 3068 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.05;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3101,324,0 chrXI 153052 . C T 2188 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2221,228,0 chrXI 153463 . G A 5019.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=26.98;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,185:186:99:5019,523,0 chrXI 153726 . C A 2114 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=19.6511;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.33;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2147,228,0 chrXI 154732 . C T 4409.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.36;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4409,483,0 chrXI 155453 . C T 2621 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2654,282,0 chrXI 159676 . A T 4810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=193;Dels=0.00;FS=4.794;HaplotypeScore=6.1198;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.571;QD=24.92;ReadPosRankSum=1.606;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4810,502,0 chrXI 163888 . G T 6104.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=22.1063;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.42;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:0,284:285:99:6104,675,0 chrXI 164020 . G T 5224.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=16.3674;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5224,564,0 chrXI 166158 . A C 4642.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.6217;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4642,507,0 chrXI 166502 . G A 4069.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=17.1727;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.88;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4069,429,0 chrXI 171212 . G A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.02;FS=0.000;HaplotypeScore=11.6599;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=22.02;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3766,414,0 chrXI 171257 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=17.96;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3484,378,0 chrXI 171261 . G A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=18.13;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3571,364,0 chrXI 171276 . T C 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.742;DP=216;Dels=0.00;FS=7.665;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-1.364;QD=16.30;ReadPosRankSum=3.772;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:5,210:216:99:3521,387,0 chrXI 171432 . C G 4094.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=20.37;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4094,453,0 chrXI 171454 . C T 4017.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.7267;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=19.69;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4017,421,0 chrXI 171646 . T A 3730.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=20.96;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3730,414,0 chrXI 171647 . G A 3882.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=21.81;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3882,411,0 chrXI 171772 . G A 4004.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.41;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4004,432,0 chrXI 172796 . C T 5271.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=15.2139;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.12;SB=-3.071e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5271,550,0 chrXI 173024 . C T 4790.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.70;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4790,519,0 chrXI 173315 . G C 5605.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=19.6528;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.88;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:0,240:245:99:5605,609,0 chrXI 173411 . G T 4354.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=15.8380;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.25;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4354,480,0 chrXI 173558 . T C 5322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=248;Dels=0.00;FS=3.046;HaplotypeScore=17.4970;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.155;QD=21.46;ReadPosRankSum=1.718;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:1,245:248:99:5322,603,0 chrXI 174509 . C T 6349.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.61;SB=-3.298e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:6349,685,0 chrXI 176335 . G A 3356.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.98;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3356,357,0 chrXI 176487 . C T 2912 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.5308;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.57;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2945,306,0 chrXI 176572 . G A 2593 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.43;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2626,276,0 chrXI 176582 . G A 2683 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.13;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2716,294,0 chrXI 176967 . A G 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.8311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.150;QD=22.81;ReadPosRankSum=1.706;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3021,333,0 chrXI 177029 . T C 3073 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.3972;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.79;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3106,336,0 chrXI 177209 . A T 5701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=223;Dels=0.00;FS=5.421;HaplotypeScore=13.5974;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.033;QD=25.57;ReadPosRankSum=1.701;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:5701,610,0 chrXI 177254 . T C 4883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.278;DP=216;Dels=0.00;FS=17.334;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.263;QD=22.61;ReadPosRankSum=4.481;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:7,208:216:99:4883,534,0 chrXI 177426 . T C 5422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=226;Dels=0.00;FS=4.830;HaplotypeScore=11.4916;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.024;QD=23.99;ReadPosRankSum=1.717;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:5422,583,0 chrXI 177482 . G A 4444.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.27;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4444,466,0 chrXI 177512 . A G 4176.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.70;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4176,447,0 chrXI 177551 . C T 4320.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.74;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4320,474,0 chrXI 177557 . A G 4434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.602;QD=23.59;ReadPosRankSum=1.714;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4434,483,0 chrXI 177965 . T C 4182.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=191;Dels=0.00;FS=7.499;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.734;QD=21.90;ReadPosRankSum=2.424;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:2,187:191:99:4182,471,0 chrXI 178177 . G A 3149 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.1834;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=24.80;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3182,333,0 chrXI 178223 . A G 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=147;Dels=0.00;FS=3.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-2.130;QD=21.31;ReadPosRankSum=2.416;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3166,360,0 chrXI 178243 . G A 2994 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=21.23;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3027,324,0 chrXI 178268 . C A 2965 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.2115;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.59;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2998,321,0 chrXI 178383 . G A 3163 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=23.78;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3196,342,0 chrXI 178399 . A G 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.506;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=-0.710;QD=21.55;ReadPosRankSum=1.707;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3028,324,0 chrXI 178417 . T A 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=-0.624;QD=20.46;ReadPosRankSum=1.661;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3040,318,0 chrXI 178422 . G A 3122 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=21.09;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3155,327,0 chrXI 178486 . A C 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=123;Dels=0.00;FS=3.417;HaplotypeScore=9.9166;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.634;QD=20.11;ReadPosRankSum=1.676;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2507,279,0 chrXI 179179 . A G 2104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.557;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=70.3773;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;MQRankSum=0.227;QD=21.47;ReadPosRankSum=2.928;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:3,95:98:99:2137,234,0 chrXI 179200 . T A 1506 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=23.53;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1539,162,0 chrXI 179275 . T G 388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.113;DP=22;Dels=0.00;FS=5.855;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-2.227;QD=17.64;ReadPosRankSum=2.113;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:2,20:22:45:421,45,0 chrXI 179289 . T C 609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.473;QD=18.45;ReadPosRankSum=1.628;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:72:642,72,0 chrXI 179372 . A G 1839 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.6321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.54;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1872,198,0 chrXI 179405 . T C 1855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.330;QD=22.08;ReadPosRankSum=1.650;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1888,210,0 chrXI 179422 . T C 1965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.689;QD=20.90;ReadPosRankSum=1.695;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1998,216,0 chrXI 179509 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=25.15;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3126,330,0 chrXI 179688 . T C 3979.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.7626;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=23.00;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3979,429,0 chrXI 179723 . C T 3322.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=22.15;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3322,345,0 chrXI 179732 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-1.307;QD=19.32;ReadPosRankSum=1.712;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3303,354,0 chrXI 179783 . T C 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-0.428;QD=19.91;ReadPosRankSum=1.712;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3385,369,0 chrXI 179928 . T C 3020 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=18.19;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3053,330,0 chrXI 179949 . C T 2852 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=17.94;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2885,306,0 chrXI 180074 . G A 2557 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.43;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2590,270,0 chrXI 180128 . A G 2299 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.09;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2332,264,0 chrXI 180215 . T C 1829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=7.404;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.063;QD=20.78;ReadPosRankSum=1.653;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1862,201,0 chrXI 180297 . A T 1027 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=9.2536;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=16.56;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1060,114,0 chrXI 180524 . A C 1561 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.78;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1594,174,0 chrXI 180554 . G A 1504 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.14;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1537,162,0 chrXI 180583 . C T 1661 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.26;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1694,174,0 chrXI 180597 . T C 1635 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=18.37;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1668,189,0 chrXI 180730 . C A 2201 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.19;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2234,231,0 chrXI 180774 . G A 3460.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=26.41;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3460,352,0 chrXI 181208 . A G 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=139;Dels=0.00;FS=3.031;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.009;QD=22.21;ReadPosRankSum=2.308;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3120,339,0 chrXI 181420 . T C 3446.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3446,387,0 chrXI 181834 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3469,381,0 chrXI 181933 . C T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.2879;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.38;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3764,396,0 chrXI 182046 . G A 5387.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=16.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5387,553,0 chrXI 182195 . G A 5682.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.2677;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.46;SB=-3.440e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5682,616,0 chrXI 182309 . C G 5258.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.6415;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.19;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5258,570,0 chrXI 182533 . C T 2426 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.56;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2459,267,0 chrXI 182544 . G T 2247 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.06;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2280,246,0 chrXI 182825 . T A 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=146;Dels=0.00;FS=3.790;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.020;QD=24.26;ReadPosRankSum=1.708;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3542,372,0 chrXI 182853 . C T 3470.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1898;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.93;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3470,366,0 chrXI 182950 . T G 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.279;QD=24.28;ReadPosRankSum=1.642;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3739,408,0 chrXI 183657 . C T 4362.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.2611;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.07;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4362,451,0 chrXI 184014 . T C 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=3.529;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.837;QD=22.96;ReadPosRankSum=1.640;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3490,378,0 chrXI 184445 . A G 1511 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.142;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.755;QD=18.89;ReadPosRankSum=2.388;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1544,171,0 chrXI 184691 . T G 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.889;QD=23.67;ReadPosRankSum=1.670;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2660,312,0 chrXI 184745 . C T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=25.67;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3620,379,0 chrXI 184772 . C T 3780.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.63;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3780,394,0 chrXI 184809 . C T 4865.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.39;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4865,511,0 chrXI 185287 . C T 2330 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2363,255,0 chrXI 185846 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3722,390,0 chrXI 185997 . G A 4750.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.1915;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.82;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4750,499,0 chrXI 186196 . A T 3793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.984;QD=23.41;ReadPosRankSum=1.711;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3793,405,0 chrXI 186423 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=23.29;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2968,306,0 chrXI 186438 . T C 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=0.336;QD=20.56;ReadPosRankSum=1.652;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2706,294,0 chrXI 186658 . T C 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=6.349;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-1.872;QD=20.14;ReadPosRankSum=2.400;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3054,333,0 chrXI 186668 . A G 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-0.511;QD=18.98;ReadPosRankSum=1.710;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3013,333,0 chrXI 187243 . C T 3169 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3202,342,0 chrXI 188557 . T C 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.301;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.287;QD=20.69;ReadPosRankSum=1.657;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2909,315,0 chrXI 188746 . C T 2382 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=18.0319;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.85;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2415,252,0 chrXI 188784 . T A 2140 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.77;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2173,237,0 chrXI 188845 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.42;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2000,210,0 chrXI 188875 . T A 1907 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.43;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1940,204,0 chrXI 189718 . G A 3969.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3969,423,0 chrXI 190778 . T C 2711 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2744,309,0 chrXI 191390 . G A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.25;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3510,369,0 chrXI 191520 . T C 3145 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.97;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3178,345,0 chrXI 191593 . T C 2756 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.97;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2789,297,0 chrXI 193196 . A G 2906 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.22;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2939,330,0 chrXI 193550 . A T 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=3.450;HaplotypeScore=10.9124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.146;QD=23.90;ReadPosRankSum=1.690;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3968,423,0 chrXI 193814 . A G 5250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=232;Dels=0.00;FS=6.887;HaplotypeScore=8.2652;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.892;QD=22.63;ReadPosRankSum=2.222;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:2,225:232:99:5250,591,0 chrXI 194063 . G A 4442.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=17.5089;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.75;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4442,463,0 chrXI 194176 . G A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=24.11;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3399,366,0 chrXI 194206 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.98;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2803,309,0 chrXI 194220 . C T 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=143;Dels=0.00;FS=3.560;HaplotypeScore=7.5730;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.981;QD=21.76;ReadPosRankSum=1.708;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3144,330,0 chrXI 194270 . T C 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-1.534;QD=22.12;ReadPosRankSum=1.683;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3130,336,0 chrXI 194297 . G A 4053.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.70;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4053,429,0 chrXI 194421 . C T 4248.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.3638;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.00;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4248,442,0 chrXI 194470 . T C 3886.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.86;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3886,420,0 chrXI 194564 . A C 2887 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.62;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2920,312,0 chrXI 194575 . C T 3088 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.59;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3121,330,0 chrXI 194609 . C T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.75;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3590,390,0 chrXI 194709 . C T 4572.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.54;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4572,472,0 chrXI 195038 . G T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=23.54;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3343,351,0 chrXI 195050 . T C 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=123.3810;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.753;QD=20.15;ReadPosRankSum=1.708;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2975,321,0 chrXI 195077 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.40;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2848,300,0 chrXI 195199 . T C 3835.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.4041;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.91;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3835,432,0 chrXI 195226 . A C 4050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=180;Dels=0.00;FS=6.002;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.579;QD=22.50;ReadPosRankSum=2.916;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:3,176:180:99:4050,435,0 chrXI 195269 . G A 3704.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.31;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3704,408,0 chrXI 195729 . A G 4329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=179;Dels=0.00;FS=3.028;HaplotypeScore=11.7846;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.666;QD=24.18;ReadPosRankSum=2.408;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4329,463,0 chrXI 195771 . G A 4568.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.69;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4568,478,0 chrXI 196002 . G A 3209.99 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.84;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3243,360,0 chrXI 196145 . T A 2907 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=24.64;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2940,312,0 chrXI 196171 . A G 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=2.912;HaplotypeScore=6.9573;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-1.106;QD=22.77;ReadPosRankSum=2.367;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2743,297,0 chrXI 196346 . T A 4181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.185;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.0652;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.416;QD=22.48;ReadPosRankSum=2.278;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4181,468,0 chrXI 196712 . T C 3467.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.08;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3467,372,0 chrXI 196916 . C T 4395.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.1894;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.44;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4395,474,0 chrXI 196937 . G A 4705.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.7802;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.99;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4705,516,0 chrXI 197099 . G T 5191.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=15.3381;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=24.03;SB=-2.839e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5191,544,0 chrXI 197297 . A G 4297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.657;QD=21.06;ReadPosRankSum=1.715;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4297,483,0 chrXI 197329 . T C 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=200;Dels=0.00;FS=3.615;HaplotypeScore=7.6335;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.507;QD=21.13;ReadPosRankSum=1.645;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4226,474,0 chrXI 197402 . C T 4185.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.8568;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4185,436,0 chrXI 197500 . A G 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.289;DP=184;Dels=0.00;FS=8.245;HaplotypeScore=8.4507;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.005;QD=21.76;ReadPosRankSum=3.384;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:4,180:184:99:4003,426,0 chrXI 198479 . T C 3026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=137;Dels=0.00;FS=3.075;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.917;QD=22.09;ReadPosRankSum=1.681;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3059,345,0 chrXI 198833 . C T 3308.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.3530;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.15;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3308,348,0 chrXI 201609 . G A 5871.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.76;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,255:258:99:5871,613,0 chrXI 201652 . C T 4477.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=18.8970;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.92;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4477,489,0 chrXI 201803 . A G 2332 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.28;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2365,261,0 chrXI 201819 . A T 2075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=99;Dels=0.00;FS=2.586;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.459;QD=20.96;ReadPosRankSum=2.868;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:3,96:99:99:2108,222,0 chrXI 201927 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.0269;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.95;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3493,360,0 chrXI 201996 . G A 2301 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.78;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2334,249,0 chrXI 202082 . C T 3203 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=25.42;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3236,328,0 chrXI 202106 . A G 2986 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.80;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3019,327,0 chrXI 202339 . A G 1994 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=23.19;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2027,216,0 chrXI 202432 . C T 2914 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.4354;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=22.24;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2947,321,0 chrXI 202506 . G A 2144 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=23.82;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2177,228,0 chrXI 202593 . A G 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.63;MQ0=0;MQRankSum=-1.630;QD=21.24;ReadPosRankSum=1.630;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1477,159,0 chrXI 202594 . T A 1500 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=0;QD=22.73;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1533,159,0 chrXI 202631 . G C 882 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.88;MQ0=0;QD=19.17;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:915,105,0 chrXI 203086 . G C 1417 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7456;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=15.92;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1450,162,0 chrXI 203125 . T A 43.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.045;DP=115;Dels=0.00;FS=5.575;HaplotypeScore=198.2599;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;MQRankSum=-0.015;QD=0.38;ReadPosRankSum=-4.432;SB=2.03 GT:AD:DP:GQ:PL 1/1:105,10:115:9:76,9,0 chrXI 203268 . A C 3155 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=21.76;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3188,345,0 chrXI 203275 . T C 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=2.644;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=-0.221;QD=20.60;ReadPosRankSum=2.384;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3123,342,0 chrXI 203301 . G A 2894 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=20.10;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2927,306,0 chrXI 203317 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=18.80;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2890,315,0 chrXI 203486 . C T 4208.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.64;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4208,462,0 chrXI 203660 . C T 4260.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.8354;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4260,456,0 chrXI 204122 . C T 2699 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.09;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2732,285,0 chrXI 204131 . T C 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.291;DP=136;Dels=0.00;FS=5.167;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-1.217;QD=20.23;ReadPosRankSum=3.317;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:4,132:136:99:2784,300,0 chrXI 204194 . A T 4283.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=24.20;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4283,448,0 chrXI 204464 . G A 4972.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.6716;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.40;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4972,529,0 chrXI 204491 . C T 5408.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.82;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5408,571,0 chrXI 204566 . A T 5677.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=21.6488;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.18;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:5677,607,0 chrXI 204941 . C T 4071.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.82;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4071,424,0 chrXI 205160 . T C 2061 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2094,240,0 chrXI 205207 . G A 1776 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1809,192,0 chrXI 205356 . C G 2384 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2417,261,0 chrXI 205481 . G T 1843 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1876,201,0 chrXI 205525 . C T 2149 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2182,237,0 chrXI 206087 . T C 4409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=199;Dels=0.00;FS=7.286;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.948;QD=22.16;ReadPosRankSum=2.387;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:2,194:199:99:4409,504,0 chrXI 206606 . C T 3900.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.08;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3900,423,0 chrXI 206732 . G A 3706.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=17.4434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.42;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3706,396,0 chrXI 207105 . G A 4429.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.6687;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.95;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4429,480,0 chrXI 207131 . T C 4431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.287;QD=23.57;ReadPosRankSum=1.677;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4431,492,0 chrXI 207179 . A G 3922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=171;Dels=0.00;FS=3.035;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.036;QD=22.94;ReadPosRankSum=2.392;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3922,432,0 chrXI 207353 . T C 3449.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.41;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3449,390,0 chrXI 207429 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.54;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3493,372,0 chrXI 208114 . T C 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;DP=108;Dels=0.00;FS=3.174;HaplotypeScore=6.0735;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-0.898;QD=19.66;ReadPosRankSum=1.283;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2156,234,0 chrXI 208115 . A T 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=6.0735;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-0.096;QD=19.80;ReadPosRankSum=1.636;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2191,231,0 chrXI 208258 . T C 3526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.560;QD=23.99;ReadPosRankSum=2.416;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3526,384,0 chrXI 208639 . C A 2963 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.70;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2996,318,0 chrXI 208745 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.99;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3502,396,0 chrXI 209185 . T A 5746.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.65;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5746,604,0 chrXI 209311 . T C 4517.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.1498;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.03;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:4517,510,0 chrXI 209449 . G A 3119 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=18.13;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3152,345,0 chrXI 209467 . G A 2556 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=39.93;MQ0=0;QD=14.61;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2589,276,0 chrXI 209475 . T C 2700 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=0;QD=14.67;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:2733,294,0 chrXI 209485 . A C 2081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=3.132;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.81;MQ0=0;MQRankSum=-1.062;QD=11.50;ReadPosRankSum=1.656;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:2114,240,0 chrXI 209488 . A G 2125 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=0;QD=11.87;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:2158,237,0 chrXI 209515 . T C 2663 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=14.39;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:2696,288,0 chrXI 209743 . G A 4319.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.3482;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=23.47;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4319,457,0 chrXI 209983 . A G 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.640;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.2647;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.896;QD=19.37;ReadPosRankSum=2.672;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2474,254,0 chrXI 210106 . T C 1907 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.43;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1940,219,0 chrXI 210267 . G A 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.319;DP=109;Dels=0.00;FS=4.934;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.143;QD=25.62;ReadPosRankSum=-1.351;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2826,277,0 chrXI 210381 . A G 2346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.751;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.291;QD=23.00;ReadPosRankSum=1.562;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2379,261,0 chrXI 210799 . C T 6535.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=17.0085;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.20;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:6535,717,0 chrXI 211081 . C T 2729 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.9698;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.24;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:2762,300,0 chrXI 211438 . C T 4899.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.00;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4899,511,0 chrXI 211471 . G A 4778.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=5.0516;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.16;SB=-2.925e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:4778,513,0 chrXI 211477 . A C 4459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=7.5158;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.276;QD=19.64;ReadPosRankSum=1.701;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4459,501,0 chrXI 211951 . T C 4764.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.4001;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.82;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4764,522,0 chrXI 211999 . G A 4575.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.6999;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=25.28;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4575,478,0 chrXI 212173 . A G 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-0.499;QD=21.30;ReadPosRankSum=1.680;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2844,321,0 chrXI 212189 . G A 2529 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.6847;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.38;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2562,276,0 chrXI 212630 . G A 1684 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1717,183,0 chrXI 212874 . G A 3710.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.28;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3710,385,0 chrXI 212912 . C T 4016.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6449;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.58;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4016,421,0 chrXI 213004 . C G 4647.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.00;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4647,510,0 chrXI 213044 . C T 4539.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.16;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4539,475,0 chrXI 213298 . A T 5268.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.04;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5268,556,0 chrXI 213351 . T G 4654.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.4880;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.85;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4654,516,0 chrXI 213389 . T G 4555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=201;Dels=0.00;FS=4.252;HaplotypeScore=15.1382;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.783;QD=22.66;ReadPosRankSum=1.714;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:1,197:201:99:4555,492,0 chrXI 213480 . T C 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=5.133;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.924;QD=21.22;ReadPosRankSum=1.709;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3237,372,0 chrXI 213501 . T C 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=142;Dels=0.00;FS=11.084;HaplotypeScore=4.9792;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-2.398;QD=21.94;ReadPosRankSum=2.398;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3149,336,0 chrXI 213552 . G A 1871 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=10.1865;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.29;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1904,204,0 chrXI 213597 . T G 1887 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=87.0139;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.45;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1920,213,0 chrXI 213630 . C T 1930 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.69;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1963,204,0 chrXI 213680 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.35;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1966,210,0 chrXI 213714 . A G 2268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=4.909;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.613;QD=23.62;ReadPosRankSum=1.696;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2301,249,0 chrXI 213763 . A G 2048 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.6369;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.38;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:2081,222,0 chrXI 213977 . T A 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.132;DP=170;Dels=0.00;FS=2.751;HaplotypeScore=11.9815;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.137;QD=23.10;ReadPosRankSum=2.406;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3927,423,0 chrXI 214537 . A G 2454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=5.730;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.737;QD=24.30;ReadPosRankSum=1.698;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2487,264,0 chrXI 215474 . T C 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=151;Dels=0.00;FS=9.836;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.675;QD=22.21;ReadPosRankSum=2.417;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3353,357,0 chrXI 215522 . T C 2781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=141;Dels=0.00;FS=7.510;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=-0.978;QD=19.72;ReadPosRankSum=2.378;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:2,135:141:99:2814,300,0 chrXI 215535 . A G 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=136;Dels=0.00;FS=3.008;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=0.316;QD=18.11;ReadPosRankSum=2.413;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2496,282,0 chrXI 215560 . C T 2780 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=17.94;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2813,291,0 chrXI 215569 . T C 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.770;DP=162;Dels=0.00;FS=2.581;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=-1.280;QD=17.43;ReadPosRankSum=2.919;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:2856,306,0 chrXI 215651 . A G 2623 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.02;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2656,291,0 chrXI 215653 . C A 2725 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.49;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2758,294,0 chrXI 215813 . A G 4378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.7058;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=1.087;QD=23.16;ReadPosRankSum=1.714;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4378,489,0 chrXI 215962 . A G 5055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=228;Dels=0.00;FS=7.911;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=1.233;QD=22.17;ReadPosRankSum=2.428;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:2,226:228:99:5055,537,0 chrXI 215965 . T C 4792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=1.136;QD=21.68;ReadPosRankSum=1.701;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4792,513,0 chrXI 216046 . G A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.27;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3583,373,0 chrXI 216382 . C T 3345.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.93;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3345,348,0 chrXI 216541 . A G 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=181;Dels=0.00;FS=7.923;HaplotypeScore=5.2992;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=1.662;QD=23.39;ReadPosRankSum=2.368;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4234,456,0 chrXI 216573 . A T 3546.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.03;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3546,372,0 chrXI 216646 . T C 2589 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=22.51;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2622,297,0 chrXI 216707 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=1.294;QD=21.82;ReadPosRankSum=1.710;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3448,378,0 chrXI 216709 . A C 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.469;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-0.044;QD=21.59;ReadPosRankSum=-1.425;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3411,350,0 chrXI 216788 . A T 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.132;DP=124;Dels=0.00;FS=3.017;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.466;QD=21.28;ReadPosRankSum=2.410;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2672,282,0 chrXI 216915 . G A 2487 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6838;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=23.03;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2520,261,0 chrXI 216924 . A G 1989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=105;Dels=0.00;FS=3.596;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;MQRankSum=-0.420;QD=18.94;ReadPosRankSum=1.665;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2022,219,0 chrXI 216939 . G A 1815 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;QD=19.31;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1848,192,0 chrXI 216973 . A G 1652 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=18.15;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1685,183,0 chrXI 216985 . G A 1753 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=18.07;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1786,192,0 chrXI 217056 . T C 2229 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=121.8691;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=16.76;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2262,246,0 chrXI 217225 . G T 2791 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.69;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2824,306,0 chrXI 217298 . C A 4168.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=25.73;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4168,430,0 chrXI 217457 . A T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.1081;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.89;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3459,369,0 chrXI 217514 . A T 4059.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.7422;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.60;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4059,429,0 chrXI 217814 . A G 4529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=190;Dels=0.00;FS=5.656;HaplotypeScore=14.3017;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.676;QD=23.84;ReadPosRankSum=2.952;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:3,186:190:99:4529,486,0 chrXI 218177 . C T 5237.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.4858;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.47;SB=-2.826e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5237,556,0 chrXI 218544 . G A 2756 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.83;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2789,294,0 chrXI 218728 . C T 3412.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.03;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3412,357,0 chrXI 218804 . A G 2814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=12.0308;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.099;QD=22.88;ReadPosRankSum=1.648;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2847,309,0 chrXI 218861 . G C 4357.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.48;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4357,460,0 chrXI 218948 . T A 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=144;Dels=0.01;FS=3.041;HaplotypeScore=16.7401;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.642;QD=21.69;ReadPosRankSum=1.635;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3156,333,0 chrXI 218976 . A G 3382.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.1500;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.99;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3382,378,0 chrXI 219042 . T G 3002 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.3772;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.74;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3035,330,0 chrXI 219155 . C T 4028.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.50;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4028,429,0 chrXI 219404 . C T 3135 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=21.33;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3168,339,0 chrXI 219413 . T C 3379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.773;DP=155;Dels=0.00;FS=10.651;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=0.786;QD=21.80;ReadPosRankSum=2.929;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3379,369,0 chrXI 219454 . G C 3926.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.18;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:3926,423,0 chrXI 219481 . C T 4501.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=24.46;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4501,463,0 chrXI 219665 . A T 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;MQRankSum=0.297;QD=24.44;ReadPosRankSum=1.683;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3422,355,0 chrXI 219692 . C T 3675.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=24.02;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3675,382,0 chrXI 219742 . A G 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=152;Dels=0.00;FS=2.584;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=1.687;QD=20.32;ReadPosRankSum=2.927;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:4,148:152:99:3122,336,0 chrXI 219747 . C T 3146 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=21.40;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3179,336,0 chrXI 219762 . A T 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=140;Dels=0.00;FS=2.603;HaplotypeScore=6.0315;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-1.371;QD=21.66;ReadPosRankSum=2.414;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3066,327,0 chrXI 219829 . G C 2394 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=18.70;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2427,264,0 chrXI 219842 . G A 2518 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.02;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=19.98;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2551,273,0 chrXI 219865 . A C 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;MQRankSum=-1.023;QD=20.24;ReadPosRankSum=1.678;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2604,282,0 chrXI 219881 . A G 2079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.388;DP=128;Dels=0.00;FS=12.254;HaplotypeScore=112.2284;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;MQRankSum=-0.758;QD=16.24;ReadPosRankSum=3.319;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:4,122:128:99:2112,243,0 chrXI 219986 . A G 1675 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.3474;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=14.32;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1708,186,0 chrXI 219992 . T G 1706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=117;Dels=0.00;FS=2.380;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;MQRankSum=-1.886;QD=14.58;ReadPosRankSum=2.564;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:4,110:117:99:1739,195,0 chrXI 220092 . T C 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=160;Dels=0.00;FS=2.913;HaplotypeScore=10.9501;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=-1.244;QD=23.29;ReadPosRankSum=2.388;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3727,405,0 chrXI 220132 . A G 3886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.825;HaplotypeScore=9.5097;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.843;QD=25.23;ReadPosRankSum=1.709;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3886,417,0 chrXI 220166 . C T 4342.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=25.69;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4342,460,0 chrXI 220245 . G A 3957.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=21.74;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3957,426,0 chrXI 220273 . A G 4086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=190;Dels=0.00;FS=4.267;HaplotypeScore=9.2941;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-0.435;QD=21.51;ReadPosRankSum=1.714;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:1,186:190:99:4086,444,0 chrXI 220310 . G C 4021.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=18.70;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4021,441,0 chrXI 220315 . A G 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=217;Dels=0.00;FS=7.770;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=-0.979;QD=17.76;ReadPosRankSum=2.382;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:3853,438,0 chrXI 220323 . C A 3966.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=18.28;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:3966,441,0 chrXI 220573 . G A 5532.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=19.3314;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=24.16;SB=-2.928e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5532,580,0 chrXI 220608 . T C 5822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=243;Dels=0.00;FS=3.024;HaplotypeScore=15.1149;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-1.202;QD=23.96;ReadPosRankSum=2.429;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:2,238:243:99:5822,642,0 chrXI 220647 . A G 6429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=269;Dels=0.00;FS=10.361;HaplotypeScore=12.8496;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.257;QD=23.90;ReadPosRankSum=2.937;SB=-3.253e+03 GT:AD:DP:GQ:PL 1/1:3,266:269:99:6429,726,0 chrXI 220701 . T C 5691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.701;DP=245;Dels=0.00;FS=10.903;HaplotypeScore=9.4817;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.819;QD=23.23;ReadPosRankSum=3.663;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:5,240:245:99:5691,648,0 chrXI 220819 . C A 4258.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.1013;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.61;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4258,451,0 chrXI 220881 . G A 3981.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.99;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3981,415,0 chrXI 221014 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.39;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2232,234,0 chrXI 221236 . G T 1775 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.1399;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=26.10;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1808,189,0 chrXI 221455 . T C 4774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=227;Dels=0.00;FS=2.478;HaplotypeScore=8.1112;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.009;QD=21.03;ReadPosRankSum=2.933;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:3,224:227:99:4774,516,0 chrXI 221472 . A C 5288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=238;Dels=0.00;FS=10.307;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=1.222;QD=22.22;ReadPosRankSum=2.367;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:5288,579,0 chrXI 221497 . A G 5603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=253;Dels=0.00;FS=5.132;HaplotypeScore=15.4246;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.876;QD=22.15;ReadPosRankSum=1.718;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:1,250:253:99:5603,595,0 chrXI 221683 . T C 3866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=7.501;HaplotypeScore=10.8668;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=1.251;QD=21.24;ReadPosRankSum=1.674;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3866,417,0 chrXI 221752 . G A 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=160;Dels=0.00;FS=5.320;HaplotypeScore=5.2943;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.498;QD=22.83;ReadPosRankSum=-0.541;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3652,377,0 chrXI 221820 . G A 2629 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.66;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2662,276,0 chrXI 221896 . A G 2639 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.5680;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.95;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2672,297,0 chrXI 222020 . A T 1894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.077;QD=21.04;ReadPosRankSum=1.617;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1927,204,0 chrXI 222033 . A G 1901 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.01;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,91:95:99:1934,219,0 chrXI 223086 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4427;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.93;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3508,384,0 chrXI 223233 . T C 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=115;Dels=0.00;FS=2.599;HaplotypeScore=5.0421;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-1.894;QD=20.59;ReadPosRankSum=2.885;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:3,111:115:99:2401,267,0 chrXI 223281 . A C 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=3.962;HaplotypeScore=8.7216;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.368;QD=21.13;ReadPosRankSum=1.705;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2717,315,0 chrXI 223330 . T C 2773 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=17.2713;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.91;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2806,303,0 chrXI 223560 . C T 3799.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.61;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3799,397,0 chrXI 223586 . C A 3519.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.2243;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.22;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3519,369,0 chrXI 224066 . T A 4155.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4155,447,0 chrXI 224949 . A T 4836.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.2320;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.94;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4836,517,0 chrXI 225168 . G A 5830.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=23.2260;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.42;SB=-3.083e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:5830,628,0 chrXI 225480 . T G 4642.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.44;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4642,504,0 chrXI 225552 . T A 5201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.454;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.7055;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-1.688;QD=21.95;ReadPosRankSum=1.717;SB=-3.018e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:5201,542,0 chrXI 225609 . T C 4485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=204;Dels=0.00;FS=6.013;HaplotypeScore=18.0048;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=1.095;QD=21.99;ReadPosRankSum=2.945;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:3,198:204:99:4485,483,0 chrXI 225819 . C T 4585.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.39;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4585,475,0 chrXI 225834 . A T 4397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=193;Dels=0.00;FS=3.029;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-1.656;QD=22.78;ReadPosRankSum=2.398;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4397,483,0 chrXI 225909 . T A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=23.35;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3782,408,0 chrXI 226045 . T A 3903.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.1070;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=22.69;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3903,412,0 chrXI 226260 . T C 3314.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.4416;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.52;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3314,372,0 chrXI 226659 . T C 2969 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3002,327,0 chrXI 226952 . T C 6940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=21.8095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.270;QD=24.01;ReadPosRankSum=2.424;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:2,284:289:99:6940,751,0 chrXI 227012 . C T 10771.01 filter AC=2;AF=1.00;AN=2;DP=435;Dels=0.00;FS=0.000;HaplotypeScore=30.5702;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.76;SB=-4.522e+03 GT:AD:DP:GQ:PL 1/1:0,434:435:99:10771,1129,0 chrXI 227319 . C T 8510.01 filter AC=2;AF=1.00;AN=2;DP=394;Dels=0.00;FS=0.000;HaplotypeScore=5.8501;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.60;SB=-4.315e+03 GT:AD:DP:GQ:PL 1/1:0,393:394:99:8510,901,0 chrXI 227322 . C T 8209.01 filter AC=2;AF=1.00;AN=2;DP=388;Dels=0.00;FS=0.000;HaplotypeScore=9.1385;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.16;SB=-4.156e+03 GT:AD:DP:GQ:PL 1/1:0,386:387:99:8209,880,0 chrXI 227403 . T C 6282.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.745;DP=371;Dels=0.00;FS=0.000;HaplotypeScore=11.1272;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=1.147;QD=16.93;ReadPosRankSum=3.925;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:8,358:371:99:6282,702,0 chrXI 227405 . A C 6524.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.058;DP=362;Dels=0.00;FS=4.552;HaplotypeScore=8.1784;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;MQRankSum=0.015;QD=18.02;ReadPosRankSum=5.500;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:12,350:362:99:6524,700,0 chrXI 227408 . C A 6973.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.485;DP=371;Dels=0.00;FS=3.629;HaplotypeScore=5.9113;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;MQRankSum=0.226;QD=18.80;ReadPosRankSum=4.083;SB=-3.460e+03 GT:AD:DP:GQ:PL 1/1:7,364:371:99:6973,721,0 chrXI 227436 . T C 5352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=302;Dels=0.00;FS=4.800;HaplotypeScore=7.0611;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.860;QD=17.72;ReadPosRankSum=1.652;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:1,301:302:99:5352,594,0 chrXI 227625 . C T 3978.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.86;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3978,415,0 chrXI 227751 . T C 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.765;DP=115;Dels=0.00;FS=8.051;HaplotypeScore=11.1026;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.610;QD=22.33;ReadPosRankSum=3.723;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:5,110:115:99:2601,282,0 chrXI 227793 . A G 3930.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.4036;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3930,417,0 chrXI 227955 . C T 3939.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.3208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.76;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3939,409,0 chrXI 228015 . A G 4795.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.94;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4795,543,0 chrXI 228147 . C A 5460.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.2363;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.33;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5460,577,0 chrXI 228339 . G A 7926.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=30.3857;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.95;SB=-3.644e+03 GT:AD:DP:GQ:PL 1/1:0,327:331:99:7926,826,0 chrXI 228480 . A G 6963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=299;Dels=0.00;FS=10.865;HaplotypeScore=22.4650;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.525;QD=23.29;ReadPosRankSum=2.929;SB=-3.315e+03 GT:AD:DP:GQ:PL 1/1:3,295:299:99:6963,756,0 chrXI 228638 . C A 4337.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4337,454,0 chrXI 228782 . A T 1988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.616;QD=22.09;ReadPosRankSum=2.395;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2021,207,0 chrXI 229405 . G T 3875.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2348;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.48;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3875,400,0 chrXI 229432 . C T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.6993;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.77;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3571,375,0 chrXI 229929 . C T 3309.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.1525;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.15;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3309,351,0 chrXI 230068 . A G 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.462;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.855;QD=18.71;ReadPosRankSum=1.689;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3082,351,0 chrXI 230092 . C A 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=177;Dels=0.00;FS=3.559;HaplotypeScore=3.6806;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=1.125;QD=20.98;ReadPosRankSum=1.654;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3714,385,0 chrXI 230159 . T C 2608 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.06;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2641,300,0 chrXI 230442 . G T 3065 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3098,333,0 chrXI 231013 . T C 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=114;Dels=0.00;FS=3.048;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.917;QD=22.58;ReadPosRankSum=2.407;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2607,294,0 chrXI 231216 . T C 2765 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.0639;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.77;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2798,318,0 chrXI 231248 . C T 2316 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.85;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2349,258,0 chrXI 231393 . G A 2611 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.72;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2644,297,0 chrXI 231462 . C T 1953 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=21.23;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1986,207,0 chrXI 231764 . C T 1279 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.97;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1312,138,0 chrXI 231791 . A T 831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.607;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.0722;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.792;QD=18.89;ReadPosRankSum=2.701;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:3,41:44:93:864,93,0 chrXI 231860 . A G 711 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.22;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:744,81,0 chrXI 231899 . G A 869 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=21.20;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:96:902,96,0 chrXI 231902 . C A 877 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=21.92;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:910,99,0 chrXI 231929 . T A 717 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.92;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:750,84,0 chrXI 232523 . C T 1913 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.05;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1946,201,0 chrXI 232567 . T C 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-1.732;QD=20.62;ReadPosRankSum=1.639;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,73:76:99:1600,177,0 chrXI 232667 . A T 1574 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=16.57;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1607,168,0 chrXI 232739 . T C 2713 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.44;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2746,303,0 chrXI 232793 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.69;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3207,336,0 chrXI 232838 . T C 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.350;DP=161;Dels=0.00;FS=9.145;HaplotypeScore=4.6856;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-0.961;QD=18.51;ReadPosRankSum=3.361;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:4,157:161:99:3013,330,0 chrXI 232839 . C T 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=160;Dels=0.00;FS=6.070;HaplotypeScore=4.6856;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=0.293;QD=19.17;ReadPosRankSum=2.841;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:3,155:160:99:3100,330,0 chrXI 232919 . T C 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=151;Dels=0.00;FS=3.016;HaplotypeScore=10.1062;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.301;QD=18.60;ReadPosRankSum=2.417;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:2841,324,0 chrXI 233252 . T G 4727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.604;QD=21.78;ReadPosRankSum=1.684;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:4727,537,0 chrXI 233436 . T C 4629.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.5363;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4629,498,0 chrXI 233962 . A G 841 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.281;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.377;QD=18.28;ReadPosRankSum=0.678;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,45:46:96:874,96,0 chrXI 234164 . T A 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.616;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=22.5678;MLEAC=1;MLEAF=0.500;MQ=56.20;MQ0=0;MQRankSum=-0.238;QD=0.57;ReadPosRankSum=-2.412;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,5:25:44:44,0,260 chrXI 234187 . T C 989 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.48;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1022,114,0 chrXI 234252 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.56;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1875,204,0 chrXI 234299 . G A 1847 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.25;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1880,207,0 chrXI 234378 . C T 2584 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.85;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2617,270,0 chrXI 234462 . C T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.72;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3461,363,0 chrXI 234818 . A G 4594.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.98;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4594,501,0 chrXI 234821 . T C 4568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=225;Dels=0.00;FS=5.765;HaplotypeScore=4.9146;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-2.419;QD=20.30;ReadPosRankSum=2.960;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:3,220:225:99:4568,498,0 chrXI 234921 . A G 4113.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.11;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4113,447,0 chrXI 234968 . G A 4040.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.08;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4040,441,0 chrXI 234980 . G C 4048.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.1747;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.00;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4048,438,0 chrXI 235023 . C T 4335.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.2019;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.82;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4335,445,0 chrXI 235310 . A G 2596 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=38.09;MQ0=0;QD=15.09;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2629,285,0 chrXI 235318 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=316.0482;MLEAC=2;MLEAF=1.00;MQ=31.91;MQ0=0;QD=15.06;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2141,222,0 chrXI 235358 . T C 1620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.286;DP=201;Dels=0.00;FS=3.699;HaplotypeScore=13.0913;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;MQRankSum=-0.539;QD=8.06;ReadPosRankSum=-2.140;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:7,194:201:99:1653,192,0 chrXI 235370 . T C 600.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.104;DP=207;Dels=0.00;FS=4.607;HaplotypeScore=11.0648;MLEAC=1;MLEAF=0.500;MQ=38.45;MQ0=0;MQRankSum=-3.460;QD=2.90;ReadPosRankSum=-11.544;SB=-4.840e+02 GT:AD:DP:GQ:PL 0/1:141,66:207:99:630,0,911 chrXI 235387 . A C 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.1583;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;MQRankSum=0.676;QD=11.34;ReadPosRankSum=1.714;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:2154,243,0 chrXI 235424 . T C 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.798;DP=187;Dels=0.00;FS=5.041;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=-1.047;QD=18.70;ReadPosRankSum=1.789;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:4,182:187:99:3497,380,0 chrXI 235446 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.5878;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.47;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3888,409,0 chrXI 235565 . C T 3398.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=23.60;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3398,366,0 chrXI 235797 . C A 3127 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.18;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3160,330,0 chrXI 235819 . A G 2393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-1.489;QD=20.81;ReadPosRankSum=1.702;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2426,273,0 chrXI 235951 . A G 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=95;Dels=0.00;FS=7.485;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.376;QD=23.75;ReadPosRankSum=2.397;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:2,92:95:99:2289,246,0 chrXI 236044 . T A 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.8620;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.407;QD=21.51;ReadPosRankSum=1.581;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2507,276,0 chrXI 236092 . C A 3169 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=24.01;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3202,336,0 chrXI 236124 . T C 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.244;QD=20.21;ReadPosRankSum=1.708;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2923,309,0 chrXI 236129 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=19.18;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2756,288,0 chrXI 236208 . G A 3535.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.37;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3535,375,0 chrXI 236227 . T C 3980.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.87;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3980,438,0 chrXI 236254 . A G 4257.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.9788;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.72;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4257,483,0 chrXI 236335 . A C 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-1.011;QD=22.40;ReadPosRankSum=1.692;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:1,172:176:99:3943,432,0 chrXI 236491 . A G 4771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=210;Dels=0.00;FS=3.021;HaplotypeScore=24.4998;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=2.099;QD=22.72;ReadPosRankSum=2.426;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4771,513,0 chrXI 236539 . G A 4245.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.40;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4245,453,0 chrXI 236875 . G T 4545.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.85;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4545,492,0 chrXI 236884 . A T 4235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.6001;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=0.839;QD=21.83;ReadPosRankSum=1.643;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4235,448,0 chrXI 237017 . C T 4477.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.6321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.61;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4477,472,0 chrXI 237186 . T C 3634.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.00;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3634,408,0 chrXI 237250 . A T 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.025;QD=22.59;ReadPosRankSum=1.682;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3151,336,0 chrXI 237287 . T C 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=4.933;HaplotypeScore=10.3947;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-1.682;QD=22.31;ReadPosRankSum=1.707;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3089,333,0 chrXI 237351 . C G 4071.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.5631;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.36;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4071,438,0 chrXI 237391 . G A 4672.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.8554;MLEAC=2;MLEAF=1.00;MQ=60.64;MQ0=0;QD=21.63;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4672,507,0 chrXI 237525 . C T 3901.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=22.16;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3901,411,0 chrXI 237528 . A G 3612.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.64;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3612,387,0 chrXI 237610 . A G 4279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.0781;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.384;QD=22.64;ReadPosRankSum=1.677;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4279,459,0 chrXI 237666 . T G 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=4.033;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.855;QD=22.67;ReadPosRankSum=1.711;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3695,402,0 chrXI 238139 . A T 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=120;Dels=0.00;FS=3.027;HaplotypeScore=5.9297;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=0.174;QD=24.10;ReadPosRankSum=2.286;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2925,315,0 chrXI 238513 . C G 3896.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.7893;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.52;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:3896,444,0 chrXI 238663 . G A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.5550;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.48;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4109,427,0 chrXI 239004 . C T 216.01 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=15.43;SB=-8.199e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:27:249,27,0 chrXI 239120 . T C 1526 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=26.31;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1559,171,0 chrXI 239145 . T C 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.718;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.344;QD=23.99;ReadPosRankSum=2.897;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:3,65:68:99:1664,183,0 chrXI 239182 . A G 1722 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.27;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1755,204,0 chrXI 239209 . C T 1905 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=18.86;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1938,210,0 chrXI 239221 . G A 2655 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.8653;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.11;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2688,291,0 chrXI 239265 . C T 4497.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=24.57;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4497,469,0 chrXI 239573 . T C 5517.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.1615;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.30;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5517,600,0 chrXI 239599 . T A 5454.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.82;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5454,606,0 chrXI 239865 . T C 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=158;Dels=0.00;FS=3.036;HaplotypeScore=20.3498;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.244;QD=21.16;ReadPosRankSum=2.371;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3344,366,0 chrXI 239982 . G A 4465.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4465,472,0 chrXI 240139 . A G 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=178;Dels=0.00;FS=3.015;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.048;QD=22.58;ReadPosRankSum=2.394;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4020,432,0 chrXI 240270 . T C 4790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.289;QD=24.82;ReadPosRankSum=1.678;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4790,519,0 chrXI 240429 . A G 4344.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.7771;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.86;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4344,471,0 chrXI 240637 . G A 6860.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=23.33;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,294:294:99:6860,730,0 chrXI 240685 . A G 260.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.386;DP=268;Dels=0.00;FS=17.020;HaplotypeScore=669.5442;MLEAC=1;MLEAF=0.500;MQ=45.33;MQ0=0;MQRankSum=4.360;QD=0.97;ReadPosRankSum=-6.831;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:241,27:268:99:290,0,2220 chrXI 241054 . G A 3004 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=19.26;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3037,324,0 chrXI 241060 . T C 2984 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.89;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3017,327,0 chrXI 241285 . A G 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.784;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=1.388;QD=20.63;ReadPosRankSum=1.708;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2963,342,0 chrXI 241344 . C A 3180 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.78;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3213,345,0 chrXI 241359 . G A 3046 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.53;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3079,321,0 chrXI 241374 . G A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=19.08;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3238,339,0 chrXI 241418 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.6667;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=18.28;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3141,330,0 chrXI 241444 . G C 3105 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=18.93;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:3138,342,0 chrXI 241660 . A G 4247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=192;Dels=0.00;FS=3.657;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.603;QD=22.12;ReadPosRankSum=1.714;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:1,187:192:99:4247,486,0 chrXI 241692 . C T 4636.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.73;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4636,510,0 chrXI 241961 . C T 2971 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=19.42;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3004,315,0 chrXI 241962 . C T 2964 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=19.76;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2997,315,0 chrXI 242032 . T C 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=1.104;QD=20.39;ReadPosRankSum=1.645;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3282,354,0 chrXI 242387 . A G 5736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=267;Dels=0.00;FS=6.205;HaplotypeScore=12.0829;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.005;QD=21.48;ReadPosRankSum=2.412;SB=-3.357e+03 GT:AD:DP:GQ:PL 1/1:2,261:267:99:5736,627,0 chrXI 242407 . C T 6228.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.93;SB=-3.879e+03 GT:AD:DP:GQ:PL 1/1:0,283:284:99:6228,655,0 chrXI 242473 . C T 5650.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=17.6872;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.25;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5650,595,0 chrXI 242634 . G C 3467.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=19.37;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3467,369,0 chrXI 242651 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=17.35;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2913,318,0 chrXI 242669 . A G 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=148;Dels=0.00;FS=2.585;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;MQRankSum=0.054;QD=18.50;ReadPosRankSum=2.953;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:2771,300,0 chrXI 242695 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=16.16;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2618,282,0 chrXI 242705 . C A 2501 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=16.79;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2534,264,0 chrXI 242919 . G A 1805 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=22.28;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1838,195,0 chrXI 243178 . G A 1396 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.1361;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.93;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1429,153,0 chrXI 243211 . A G 1276 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.54;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1309,138,0 chrXI 243364 . G A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.5859;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.47;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3379,354,0 chrXI 243628 . A G 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=3.178;HaplotypeScore=11.9254;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.197;QD=21.41;ReadPosRankSum=1.688;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3404,384,0 chrXI 243838 . C T 5839.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.95;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5839,607,0 chrXI 244000 . C G 6532.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=13.3162;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.33;SB=-3.201e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:6532,735,0 chrXI 244570 . C T 3845.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3845,417,0 chrXI 244906 . T C 3883.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.27;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3883,423,0 chrXI 245474 . G A 3792.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.5927;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.62;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3792,411,0 chrXI 245804 . A T 1721 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.35;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1754,186,0 chrXI 245889 . C T 1476 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.36;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1509,153,0 chrXI 245907 . T C 1444 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.63;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1477,171,0 chrXI 246131 . G A 1417 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.4243;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.89;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1450,168,0 chrXI 246336 . G A 3505.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.6437;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.04;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3505,369,0 chrXI 246578 . G C 7894.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=29.8798;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.92;SB=-3.082e+03 GT:AD:DP:GQ:PL 1/1:0,327:330:99:7894,856,0 chrXI 246698 . A G 6387.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=324;Dels=0.00;FS=8.156;HaplotypeScore=7.6880;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.617;QD=19.71;ReadPosRankSum=2.351;SB=-3.307e+03 GT:AD:DP:GQ:PL 1/1:2,322:324:99:6387,685,0 chrXI 246699 . A C 6286.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.978;DP=320;Dels=0.00;FS=12.103;HaplotypeScore=6.1106;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=-1.975;QD=19.64;ReadPosRankSum=2.953;SB=-3.460e+03 GT:AD:DP:GQ:PL 1/1:3,317:320:99:6286,679,0 chrXI 246708 . C T 6497.01 SnpCluster AC=2;AF=1.00;AN=2;DP=348;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=18.67;SB=-3.898e+03 GT:AD:DP:GQ:PL 1/1:0,348:348:99:6497,676,0 chrXI 246716 . T C 6321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=353;Dels=0.00;FS=5.811;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=0.122;QD=17.91;ReadPosRankSum=2.957;SB=-4.033e+03 GT:AD:DP:GQ:PL 1/1:3,350:353:99:6321,696,0 chrXI 246807 . A G 6481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=17.5315;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.475;QD=20.91;ReadPosRankSum=1.687;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:1,309:310:99:6481,732,0 chrXI 246986 . T A 3039 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.6529;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=18.20;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3072,330,0 chrXI 247739 . T A 2100 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=21.43;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2133,228,0 chrXI 247741 . A G 2008 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;QD=20.49;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2041,225,0 chrXI 247756 . G A 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;MQRankSum=0.738;QD=21.60;ReadPosRankSum=-0.353;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2387,252,0 chrXI 247793 . T C 2233 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=19.09;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2266,264,0 chrXI 247813 . G A 2206 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=19.52;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2239,234,0 chrXI 247876 . G T 1817 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.73;MQ0=0;QD=15.94;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1850,192,0 chrXI 247882 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=0;QD=15.65;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1754,180,0 chrXI 247896 . A G 1445 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=84.2176;MLEAC=2;MLEAF=1.00;MQ=33.46;MQ0=0;QD=13.76;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1478,162,0 chrXI 247900 . A T 1388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=3.511;HaplotypeScore=85.2092;MLEAC=2;MLEAF=1.00;MQ=32.38;MQ0=0;MQRankSum=-1.080;QD=13.74;ReadPosRankSum=1.698;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1421,150,0 chrXI 247927 . G T 957 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.28;MQ0=0;QD=11.00;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:990,108,0 chrXI 247951 . G T 737 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8410;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;QD=10.10;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:87:770,87,0 chrXI 247983 . A T 952 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=11.33;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:985,105,0 chrXI 247987 . G A 1146 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.09;MQ0=0;QD=12.59;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1179,126,0 chrXI 248004 . C T 1667 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.22;MQ0=0;QD=14.62;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1700,180,0 chrXI 248028 . A G 2275 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;QD=16.98;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2308,249,0 chrXI 248307 . G C 2410 SnpCluster AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=12.89;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:2443,264,0 chrXI 248310 . C A 2386 SnpCluster AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=12.69;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:2419,252,0 chrXI 248315 . A G 2266 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=-1.364;QD=12.05;ReadPosRankSum=1.695;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:2299,249,0 chrXI 248487 . G A 5626.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.15;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:5626,624,0 chrXI 248663 . G A 3619.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.4670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3619,384,0 chrXI 248727 . A G 3371.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3371,363,0 chrXI 249055 . G A 2064 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.72;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2097,231,0 chrXI 249305 . A G 5140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=212;Dels=0.00;FS=4.710;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.478;QD=24.25;ReadPosRankSum=1.699;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:5140,552,0 chrXI 249447 . T A 4302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=173;Dels=0.00;FS=3.035;HaplotypeScore=11.6639;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.689;QD=24.87;ReadPosRankSum=2.421;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4302,474,0 chrXI 249660 . A G 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.385;DP=143;Dels=0.00;FS=8.216;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.153;QD=22.17;ReadPosRankSum=3.348;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:4,139:143:99:3204,351,0 chrXI 249723 . T C 2606 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2639,288,0 chrXI 249846 . C T 2393 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.11;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2426,267,0 chrXI 249855 . T C 2388 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=20.77;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2421,258,0 chrXI 249882 . A G 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-0.160;QD=18.67;ReadPosRankSum=1.604;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2068,225,0 chrXI 249915 . T C 2485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=3.044;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-1.382;QD=19.26;ReadPosRankSum=2.354;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2518,273,0 chrXI 249960 . A G 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=136;Dels=0.00;FS=6.250;HaplotypeScore=12.1492;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.721;QD=22.08;ReadPosRankSum=2.359;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3036,342,0 chrXI 250094 . G A 2886 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.86;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2919,303,0 chrXI 250113 . G A 2937 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.83;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2970,321,0 chrXI 250134 . G A 3130 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.06;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3163,339,0 chrXI 250275 . C T 3629.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.97;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3629,387,0 chrXI 250309 . T G 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=186;Dels=0.00;FS=2.890;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.720;QD=22.41;ReadPosRankSum=2.397;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4168,477,0 chrXI 250388 . C T 5309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=220;Dels=0.00;FS=3.132;HaplotypeScore=8.6733;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.367;QD=24.13;ReadPosRankSum=0.524;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:1,217:220:99:5309,573,0 chrXI 250932 . A G 4739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.850;QD=21.94;ReadPosRankSum=1.700;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4739,531,0 chrXI 251021 . A G 4666.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.9461;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.91;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4666,499,0 chrXI 251058 . C T 4230.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=16.6837;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.03;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4230,436,0 chrXI 251136 . C T 3992.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.3329;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.35;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3992,429,0 chrXI 251703 . T C 3703.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.58;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3703,399,0 chrXI 251749 . G A 4518.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=16.5782;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.17;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,190:195:99:4518,472,0 chrXI 251928 . C T 5449.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=16.5961;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.23;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5449,571,0 chrXI 252123 . A T 4372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.6808;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.268;QD=22.54;ReadPosRankSum=1.661;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4372,454,0 chrXI 252204 . C T 3182 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.5386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.64;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3215,354,0 chrXI 252294 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.5127;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.09;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3196,345,0 chrXI 252326 . C G 2605 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.18;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2638,303,0 chrXI 252870 . T C 2963 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.11;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2996,339,0 chrXI 252887 . A G 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.337;QD=21.17;ReadPosRankSum=2.414;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:2,135:138:99:2955,327,0 chrXI 252966 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3310,348,0 chrXI 253117 . G A 2648 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.75;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2681,288,0 chrXI 253234 . A G 2888 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.92;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2921,315,0 chrXI 253350 . A G 2100 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2133,237,0 chrXI 253749 . C A 2544 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2577,264,0 chrXI 253838 . A G 2941 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2974,336,0 chrXI 254023 . A G 3774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=3.383;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.451;QD=25.67;ReadPosRankSum=1.661;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3774,405,0 chrXI 254141 . G A 5297.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.9869;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=25.59;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5297,547,0 chrXI 254328 . G A 4208.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.99;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4208,453,0 chrXI 254342 . G A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=23.07;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3991,423,0 chrXI 254358 . C T 3577.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.6344;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.04;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3577,390,0 chrXI 254579 . T C 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.5987;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-1.095;QD=22.37;ReadPosRankSum=1.711;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3668,399,0 chrXI 254951 . G C 4404.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.6846;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.70;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4404,483,0 chrXI 254966 . A G 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=3.711;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-1.437;QD=20.90;ReadPosRankSum=1.714;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3950,450,0 chrXI 255077 . G A 5858.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.04;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5858,613,0 chrXI 255600 . C T 2475 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.80;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2508,270,0 chrXI 256639 . A G 4060.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4060,453,0 chrXI 256761 . A G 4459.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.22;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4459,486,0 chrXI 257249 . C A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.0442;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.03;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3883,423,0 chrXI 257258 . C T 4081.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.91;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4081,432,0 chrXI 257878 . T A 3093 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=19.95;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3126,330,0 chrXI 257882 . T A 3192 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.73;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3225,330,0 chrXI 257970 . C A 3114 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6063;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=21.04;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3147,348,0 chrXI 257993 . G T 3106 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=20.43;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3139,339,0 chrXI 258001 . T A 3048 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=20.46;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3081,321,0 chrXI 258002 . C A 3052 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=20.35;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3085,321,0 chrXI 258186 . G A 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=6.5277;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-1.709;QD=22.79;ReadPosRankSum=1.415;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3556,372,0 chrXI 258188 . T G 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=156;Dels=0.01;FS=3.008;HaplotypeScore=5.5557;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=0.721;QD=22.10;ReadPosRankSum=2.386;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3448,375,0 chrXI 258466 . G A 10054.01 filter AC=2;AF=1.00;AN=2;DP=389;Dels=0.00;FS=0.000;HaplotypeScore=27.5724;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=25.85;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,386:389:99:10054,1043,0 chrXI 258604 . A T 8108.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=11.7901;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.57;SB=-3.762e+03 GT:AD:DP:GQ:PL 1/1:0,330:330:99:8108,850,0 chrXI 258873 . A G 4949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=15.0515;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.763;QD=20.88;ReadPosRankSum=1.717;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:1,235:237:99:4949,534,0 chrXI 259285 . C A 4684.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.40;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4684,516,0 chrXI 259465 . T C 2878 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.5964;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=17.55;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,162:164:99:2911,333,0 chrXI 259753 . A G 2690 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=26.90;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2723,291,0 chrXI 259774 . T A 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=1.657;QD=24.02;ReadPosRankSum=2.869;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:3,97:100:99:2435,255,0 chrXI 259792 . G A 2112 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.4757;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=22.71;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2145,228,0 chrXI 260006 . T C 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=114;Dels=0.00;FS=4.298;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=0.046;QD=20.70;ReadPosRankSum=1.701;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2393,261,0 chrXI 260037 . G A 2358 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=20.50;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2391,261,0 chrXI 260038 . C T 2433 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=21.16;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2466,255,0 chrXI 260152 . C T 3029 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.34;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3062,324,0 chrXI 260236 . G A 2346 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=22.56;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2379,246,0 chrXI 260245 . A C 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=3.757;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=0.456;QD=20.33;ReadPosRankSum=1.641;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2351,270,0 chrXI 260276 . C A 2601 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.99;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2634,279,0 chrXI 260286 . A G 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=3.041;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;MQRankSum=0.410;QD=18.17;ReadPosRankSum=2.345;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2595,285,0 chrXI 260406 . A G 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=124;Dels=0.00;FS=6.570;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.190;QD=22.81;ReadPosRankSum=2.390;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2861,324,0 chrXI 260780 . A G 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=143;Dels=0.00;FS=3.670;HaplotypeScore=123.6581;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;MQRankSum=-0.122;QD=20.64;ReadPosRankSum=1.708;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2984,324,0 chrXI 260911 . A G 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;MQRankSum=-1.435;QD=17.69;ReadPosRankSum=2.411;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2262,255,0 chrXI 260914 . A G 2258 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;QD=17.50;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2291,255,0 chrXI 260953 . T C 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.064;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=127.9196;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;MQRankSum=-1.284;QD=13.72;ReadPosRankSum=2.359;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:2,133:137:99:1913,194,0 chrXI 260961 . T C 2058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=4.678;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;MQRankSum=-1.406;QD=14.91;ReadPosRankSum=1.707;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2091,225,0 chrXI 261069 . C T 2641 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.02;FS=0.000;HaplotypeScore=7.1126;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.47;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2674,282,0 chrXI 261093 . A T 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=5.218;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=1.315;QD=24.11;ReadPosRankSum=1.680;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3239,342,0 chrXI 261359 . T C 4792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.324;DP=217;Dels=0.00;FS=15.858;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.687;QD=22.08;ReadPosRankSum=3.404;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:4,213:217:99:4792,540,0 chrXI 261608 . T C 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=16.3293;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.071;QD=20.54;ReadPosRankSum=1.696;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3985,441,0 chrXI 261680 . T C 4484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=210;Dels=0.00;FS=5.626;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.555;QD=21.35;ReadPosRankSum=2.919;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:3,207:210:99:4484,492,0 chrXI 261697 . C T 4749.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.94;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4749,490,0 chrXI 262136 . C A 4110.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=24.46;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4110,444,0 chrXI 262447 . T C 4991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.280;DP=214;Dels=0.00;FS=8.410;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.553;QD=23.32;ReadPosRankSum=3.378;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:4,209:214:99:4991,549,0 chrXI 262474 . T C 5130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=219;Dels=0.00;FS=2.574;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.636;QD=23.42;ReadPosRankSum=2.949;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:3,215:219:99:5130,561,0 chrXI 262597 . A G 6366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=262;Dels=0.00;FS=4.856;HaplotypeScore=15.0678;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.106;QD=24.30;ReadPosRankSum=1.692;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:1,259:262:99:6366,705,0 chrXI 262636 . A G 5577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=223;Dels=0.00;FS=3.293;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.593;QD=25.01;ReadPosRankSum=1.716;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:1,221:223:99:5577,601,0 chrXI 263047 . G A 5045.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.9641;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5045,526,0 chrXI 263187 . C T 4658.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.67;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4658,487,0 chrXI 263834 . G A 4436.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.7596;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.40;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4436,466,0 chrXI 263873 . A G 4532.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.6310;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.24;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4532,498,0 chrXI 263921 . T A 4578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.742;QD=23.36;ReadPosRankSum=1.714;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4578,484,0 chrXI 263970 . C T 4848.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4848,493,0 chrXI 264078 . A G 5122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=226;Dels=0.00;FS=3.818;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.325;QD=22.66;ReadPosRankSum=1.686;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:1,223:226:99:5122,564,0 chrXI 264216 . A G 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=151;Dels=0.00;FS=2.834;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.773;QD=22.47;ReadPosRankSum=2.368;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3393,369,0 chrXI 264387 . G A 4226.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.1121;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.74;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4226,450,0 chrXI 264567 . C T 3933.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.69;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3933,409,0 chrXI 264611 . T G 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=3.217;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.161;QD=21.95;ReadPosRankSum=1.692;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3819,414,0 chrXI 264784 . C G 4656.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.63;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:4656,528,0 chrXI 264824 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=3.064;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.941;QD=22.26;ReadPosRankSum=1.711;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3629,402,0 chrXI 264974 . C T 5276.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.8278;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.45;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5276,573,0 chrXI 265051 . C G 4471.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.17;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4471,489,0 chrXI 265175 . T C 4868.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.93;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4868,534,0 chrXI 265253 . A G 4307.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.8501;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.67;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4307,465,0 chrXI 265290 . G A 5117.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.7601;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.37;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5117,547,0 chrXI 265405 . G C 3489.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.57;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3489,381,0 chrXI 265522 . G A 4947.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.7565;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4947,523,0 chrXI 265685 . T C 2541 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=18.96;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2574,291,0 chrXI 265911 . C T 429 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.50;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:51:462,51,0 chrXI 265955 . G A 362 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:42:395,42,0 chrXI 266175 . G A 2202 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.94;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2235,252,0 chrXI 266211 . A G 2344 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.94;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2377,258,0 chrXI 266376 . G A 2928 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.70;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2961,318,0 chrXI 266462 . T C 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=128;Dels=0.00;FS=9.750;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.259;QD=23.70;ReadPosRankSum=2.373;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3066,351,0 chrXI 266523 . A G 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=2.957;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=0.865;QD=21.09;ReadPosRankSum=2.328;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2163,234,0 chrXI 266528 . T C 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=7.529;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-1.905;QD=21.90;ReadPosRankSum=2.379;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2311,249,0 chrXI 266610 . G A 2589 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.2805;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.54;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2622,285,0 chrXI 266664 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.21;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2493,264,0 chrXI 266730 . A T 2922 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.81;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2955,318,0 chrXI 266841 . G A 2970 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.1473;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.34;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,142:146:99:3003,324,0 chrXI 267171 . C T 3277.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.5675;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=19.39;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3277,345,0 chrXI 267180 . A G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.0882;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.111;QD=20.07;ReadPosRankSum=1.377;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3164,348,0 chrXI 267501 . T C 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=-0.633;QD=21.47;ReadPosRankSum=1.684;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3167,342,0 chrXI 267504 . T C 2958 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=19.46;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2991,330,0 chrXI 267528 . C T 2843 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.90;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2876,309,0 chrXI 267597 . G A 2836 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.9273;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.16;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2869,315,0 chrXI 267639 . T A 3449.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.64;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3449,378,0 chrXI 267702 . A T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.39;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3380,369,0 chrXI 267712 . C T 3462.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=22.48;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3462,357,0 chrXI 267738 . A G 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.323;QD=20.31;ReadPosRankSum=1.684;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2978,321,0 chrXI 267822 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.15;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3671,381,0 chrXI 268601 . A G 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=129;Dels=0.00;FS=3.038;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.725;QD=23.70;ReadPosRankSum=2.354;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3090,330,0 chrXI 268802 . G A 2724 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.89;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2757,288,0 chrXI 269100 . T C 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=108;Dels=0.00;FS=6.563;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.490;QD=22.13;ReadPosRankSum=2.404;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2423,261,0 chrXI 269184 . A T 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=158;Dels=0.00;FS=9.379;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.163;QD=24.92;ReadPosRankSum=2.356;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3938,412,0 chrXI 269383 . T C 3976.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=21.73;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3976,447,0 chrXI 269500 . G A 2797 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.93;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2830,300,0 chrXI 269524 . G A 2172 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.93;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2205,231,0 chrXI 269563 . T C 3000 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.28;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3033,327,0 chrXI 269826 . A G 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=136;Dels=0.00;FS=2.744;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.052;QD=22.04;ReadPosRankSum=2.377;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3030,327,0 chrXI 270096 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.77;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3471,390,0 chrXI 270178 . G C 3364.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.6452;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.58;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3364,360,0 chrXI 270231 . A G 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=165;Dels=0.00;FS=3.575;HaplotypeScore=10.5337;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.803;QD=21.60;ReadPosRankSum=1.690;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3564,396,0 chrXI 270342 . G A 4078.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.1465;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.70;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4078,444,0 chrXI 270852 . A G 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=3.364;HaplotypeScore=10.4302;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.045;QD=23.38;ReadPosRankSum=1.702;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:2769,303,0 chrXI 270883 . T C 2447 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.7487;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.30;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2480,276,0 chrXI 270966 . C A 2599 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.4838;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.41;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2632,288,0 chrXI 270990 . T C 2632 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.50;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2665,288,0 chrXI 271016 . G A 3005 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.9100;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.23;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3038,312,0 chrXI 271048 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.11;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2609,282,0 chrXI 271129 . C T 2864 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.03;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2897,312,0 chrXI 271156 . T G 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.4858;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.594;QD=21.41;ReadPosRankSum=1.658;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3052,330,0 chrXI 271321 . C T 2330 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=20.80;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2363,255,0 chrXI 271323 . T A 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;MQRankSum=0.405;QD=21.60;ReadPosRankSum=1.700;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2344,243,0 chrXI 271532 . C T 2252 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=17.59;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2285,246,0 chrXI 271548 . A C 1908 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9067;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=15.90;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1941,216,0 chrXI 271663 . G A 2806 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=19.90;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2839,294,0 chrXI 271696 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.9192;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=18.92;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2568,273,0 chrXI 271718 . A G 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-0.264;QD=19.05;ReadPosRankSum=1.686;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:2928,324,0 chrXI 272205 . C T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.98;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3669,385,0 chrXI 272320 . C T 3849.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=26.18;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3849,397,0 chrXI 272494 . G A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.99;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3563,370,0 chrXI 272511 . G T 3353.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.21;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3353,351,0 chrXI 272811 . T C 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=3.815;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.986;QD=22.55;ReadPosRankSum=1.679;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2964,318,0 chrXI 272960 . G C 3274.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.72;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3274,354,0 chrXI 273017 . C T 2633 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2666,273,0 chrXI 273068 . C T 3088 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.12;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3121,324,0 chrXI 273176 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3354,351,0 chrXI 273206 . A G 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=131;Dels=0.00;FS=3.391;HaplotypeScore=11.2367;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.331;QD=24.41;ReadPosRankSum=1.679;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3231,351,0 chrXI 273558 . T A 6074.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.54;SB=-3.168e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:6074,660,0 chrXI 273860 . A G 4791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.968;DP=220;Dels=0.00;FS=6.063;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.599;QD=21.78;ReadPosRankSum=2.922;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:3,215:220:99:4791,522,0 chrXI 273882 . A G 5367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.121;DP=240;Dels=0.00;FS=3.025;HaplotypeScore=7.3487;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.056;QD=22.36;ReadPosRankSum=0.519;SB=-3.136e+03 GT:AD:DP:GQ:PL 1/1:2,237:240:99:5367,563,0 chrXI 274112 . C T 4825.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=16.0200;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.24;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4825,525,0 chrXI 274155 . G A 4642.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.44;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4642,490,0 chrXI 274224 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.4823;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=1.182;QD=20.34;ReadPosRankSum=2.319;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:3824,429,0 chrXI 274263 . C A 3514.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.5168;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=21.17;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3514,378,0 chrXI 274276 . T C 3319.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=21.28;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3319,354,0 chrXI 274314 . G A 2908 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.54;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2941,312,0 chrXI 274403 . G A 2906 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=24.1429;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.64;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2939,312,0 chrXI 274476 . G A 3956.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=25.36;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3956,412,0 chrXI 274746 . T C 4638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.440;QD=24.16;ReadPosRankSum=1.696;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:4638,504,0 chrXI 274968 . T C 5582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.182;DP=258;Dels=0.00;FS=5.229;HaplotypeScore=12.1180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.501;QD=21.64;ReadPosRankSum=3.400;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:4,252:258:99:5582,621,0 chrXI 275016 . A G 5619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=256;Dels=0.00;FS=2.936;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.496;QD=21.95;ReadPosRankSum=2.392;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:2,253:256:99:5619,615,0 chrXI 275352 . T C 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=125;Dels=0.00;FS=9.247;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-1.123;QD=21.38;ReadPosRankSum=2.943;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:3,120:125:99:2705,288,0 chrXI 275360 . A C 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=124;Dels=0.00;FS=3.504;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.272;QD=18.97;ReadPosRankSum=0.157;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,120:124:99:2385,245,0 chrXI 275624 . G T 4220.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=24.1449;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.06;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4220,439,0 chrXI 275743 . T A 6448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=266;Dels=0.00;FS=2.919;HaplotypeScore=20.0740;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.466;QD=24.24;ReadPosRankSum=2.376;SB=-3.097e+03 GT:AD:DP:GQ:PL 1/1:2,264:266:99:6448,694,0 chrXI 278119 . C A 2020 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=13.2436;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.20;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2053,225,0 chrXI 279017 . T A 4042.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.20;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4042,426,0 chrXI 285242 . A G 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.168;QD=24.46;ReadPosRankSum=1.681;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3326,366,0 chrXI 286321 . T A 191.03 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.10;SB=-8.491e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:24:224,24,0 chrXI 286581 . G A 2036 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.99;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2069,216,0 chrXI 287276 . C G 3556.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.1719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3556,387,0 chrXI 289859 . G C 5251.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.8757;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5251,565,0 chrXI 292055 . G A 3343.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.4309;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.03;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3343,351,0 chrXI 292283 . A C 2921 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.3217;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.14;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2954,333,0 chrXI 297280 . G A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.5796;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.13;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3624,387,0 chrXI 297401 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.85;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3163,336,0 chrXI 297476 . G A 4053.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.1763;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4053,424,0 chrXI 297512 . C T 3682.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.87;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3682,393,0 chrXI 297561 . G A 3541.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.25;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3541,384,0 chrXI 297857 . A C 4542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=3.055;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.513;QD=22.94;ReadPosRankSum=1.714;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4542,489,0 chrXI 301521 . A G 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.692;DP=134;Dels=0.00;FS=5.884;HaplotypeScore=16.9807;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-2.166;QD=23.07;ReadPosRankSum=2.903;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:3124,336,0 chrXI 302097 . T C 1981 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.51;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2014,219,0 chrXI 302470 . G T 2332 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.32;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2365,249,0 chrXI 302490 . T A 2717 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.64;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2750,297,0 chrXI 302979 . A G 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.6776;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=1;MQRankSum=0.221;QD=22.04;ReadPosRankSum=1.654;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2987,327,0 chrXI 303760 . T C 4943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.924;QD=23.54;ReadPosRankSum=1.716;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4943,526,0 chrXI 304340 . G C 2429 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.36;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2462,264,0 chrXI 305729 . C A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.6433;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3252,342,0 chrXI 306453 . T G 3947.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=14.1624;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.07;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3947,417,0 chrXI 307466 . C G 5516.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.6029;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.98;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5516,597,0 chrXI 307606 . A G 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=198;Dels=0.00;FS=5.423;HaplotypeScore=10.0836;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.294;QD=20.95;ReadPosRankSum=2.680;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:4148,447,0 chrXI 308425 . T C 4623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.729;DP=204;Dels=0.00;FS=11.343;HaplotypeScore=9.5426;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.685;QD=22.66;ReadPosRankSum=2.936;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:3,201:204:99:4623,491,0 chrXI 308754 . T G 4407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=191;Dels=0.00;FS=6.470;HaplotypeScore=18.4950;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.747;QD=23.07;ReadPosRankSum=2.411;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:2,187:191:99:4407,471,0 chrXI 309009 . C T 5508.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=31.0767;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.74;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5508,577,0 chrXI 309090 . T A 4024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.195;QD=22.61;ReadPosRankSum=1.713;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4024,432,0 chrXI 309188 . T C 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=181;Dels=0.00;FS=8.242;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.416;QD=22.41;ReadPosRankSum=2.395;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4057,444,0 chrXI 309294 . G A 3873.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.3753;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.26;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3873,406,0 chrXI 309751 . T G 2008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.119;QD=20.70;ReadPosRankSum=1.696;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2041,225,0 chrXI 310373 . G A 3785.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=25.23;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3785,408,0 chrXI 310423 . T A 3111 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.46;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3144,327,0 chrXI 310507 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.85;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2848,315,0 chrXI 310580 . A G 1574 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=11.66;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:1607,180,0 chrXI 310692 . G A 2865 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=22.21;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2898,306,0 chrXI 310702 . C A 2805 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.75;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2838,294,0 chrXI 310798 . C A 4205.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=23.49;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4205,447,0 chrXI 310861 . A G 4690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.636;DP=211;Dels=0.00;FS=17.353;HaplotypeScore=23.6495;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.767;QD=22.23;ReadPosRankSum=3.814;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:5,206:211:99:4690,516,0 chrXI 311030 . T C 4240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=187;Dels=0.00;FS=13.679;HaplotypeScore=12.5851;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;MQRankSum=0.911;QD=22.67;ReadPosRankSum=3.337;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:4,181:187:99:4240,456,0 chrXI 311077 . G A 4799.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.4656;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=22.64;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4799,519,0 chrXI 311174 . T G 922.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.700;DP=187;Dels=0.00;FS=6.858;HaplotypeScore=14.3141;MLEAC=1;MLEAF=0.500;MQ=34.40;MQ0=0;MQRankSum=-0.813;QD=4.93;ReadPosRankSum=-10.931;SB=-3.440e+02 GT:AD:DP:GQ:PL 0/1:110,76:187:99:952,0,103 chrXI 311278 . T C 1327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=37.69;MQ0=0;MQRankSum=-0.268;QD=13.40;ReadPosRankSum=1.696;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:1,96:99:99:1360,156,0 chrXI 311288 . A G 872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=8.829;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;MQRankSum=-1.279;QD=10.38;ReadPosRankSum=1.650;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:905,105,0 chrXI 311294 . A C 633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.717;DP=80;Dels=0.00;FS=52.806;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=32.16;MQ0=0;MQRankSum=-0.914;QD=7.91;ReadPosRankSum=3.717;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:5,75:80:78:666,78,0 chrXI 311302 . C G 642 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.12;MQ0=0;QD=7.93;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:81:675,81,0 chrXI 311306 . A G 678 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;QD=7.29;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:84:711,84,0 chrXI 311331 . T C 940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.380;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;MQRankSum=-3.131;QD=8.32;ReadPosRankSum=3.380;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:4,109:113:99:973,108,0 chrXI 311338 . C T 1156 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=9.40;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1189,129,0 chrXI 311410 . A T 3775.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=20.41;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3775,402,0 chrXI 311431 . A T 4353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=202;Dels=0.00;FS=4.793;HaplotypeScore=8.2216;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=1.029;QD=21.55;ReadPosRankSum=1.681;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4353,462,0 chrXI 311462 . A G 4068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=221;Dels=0.00;FS=10.638;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;MQRankSum=0.619;QD=18.41;ReadPosRankSum=2.416;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:2,218:221:99:4068,456,0 chrXI 311476 . C G 3946.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=2.6694;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;QD=17.38;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:3946,464,0 chrXI 311502 . A G 4877.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=42.96;MQ0=0;QD=19.83;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:4877,531,0 chrXI 311526 . T C 4833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=251;Dels=0.00;FS=5.232;HaplotypeScore=19.2495;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;MQRankSum=0.374;QD=19.26;ReadPosRankSum=3.398;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:4,245:251:99:4833,549,0 chrXI 311590 . C T 5386.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=22.4897;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=22.16;SB=-3.083e+03 GT:AD:DP:GQ:PL 1/1:0,238:243:99:5386,574,0 chrXI 311668 . A G 6521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=303;Dels=0.00;FS=2.984;HaplotypeScore=25.5618;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-0.346;QD=21.52;ReadPosRankSum=2.433;SB=-3.730e+03 GT:AD:DP:GQ:PL 1/1:2,299:303:99:6521,711,0 chrXI 311735 . G A 4995.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=19.1496;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=18.50;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,268:270:99:4995,546,0 chrXI 311744 . T G 4820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=256;Dels=0.00;FS=3.548;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;MQRankSum=0.424;QD=18.83;ReadPosRankSum=1.718;SB=-2.907e+03 GT:AD:DP:GQ:PL 1/1:1,248:256:99:4820,531,0 chrXI 311786 . T C 4300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=221;Dels=0.00;FS=6.244;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;MQRankSum=-0.798;QD=19.46;ReadPosRankSum=2.393;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:2,215:221:99:4300,471,0 chrXI 311803 . C T 4368.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=18.75;SB=-3.035e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4368,474,0 chrXI 311820 . T C 4625.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=19.76;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4625,504,0 chrXI 311850 . T A 4609.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.04;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4609,492,0 chrXI 311897 . A G 3351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-0.285;QD=18.93;ReadPosRankSum=2.422;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3351,366,0 chrXI 311898 . A G 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.250;DP=176;Dels=0.00;FS=5.086;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-1.503;QD=19.07;ReadPosRankSum=3.410;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:4,171:176:99:3356,369,0 chrXI 311975 . G A 3948.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=17.3998;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=21.34;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3948,441,0 chrXI 312014 . G C 3736.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.01;FS=0.000;HaplotypeScore=7.7351;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=18.77;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,192:197:99:3736,405,0 chrXI 312016 . C T 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=198;Dels=0.00;FS=2.695;HaplotypeScore=7.2293;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;MQRankSum=-0.825;QD=18.93;ReadPosRankSum=2.189;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:3748,399,0 chrXI 312273 . G A 2751 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=18.10;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:2784,291,0 chrXI 312289 . C T 2745 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=18.42;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2778,300,0 chrXI 312353 . T C 4150.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=20.3963;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.96;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4150,447,0 chrXI 312511 . T C 3658.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8102;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=24.55;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3658,396,0 chrXI 312545 . T G 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=163;Dels=0.00;FS=3.260;HaplotypeScore=6.5069;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=0.269;QD=20.68;ReadPosRankSum=1.711;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3371,369,0 chrXI 312553 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=170;Dels=0.00;FS=6.642;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-0.316;QD=20.20;ReadPosRankSum=2.420;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:3434,387,0 chrXI 312734 . A C 2988 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.13;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3021,330,0 chrXI 313024 . T C 2444 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=24.44;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2477,276,0 chrXI 313063 . C T 2716 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=24.47;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2749,282,0 chrXI 313073 . A C 2146 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.25;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2179,231,0 chrXI 313195 . G A 2728 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=11.5715;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=23.52;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2761,300,0 chrXI 313226 . A G 2868 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=23.13;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2901,330,0 chrXI 313299 . T C 1669 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=0;QD=21.13;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1702,192,0 chrXI 313318 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;QD=21.97;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1791,189,0 chrXI 313345 . G T 1289 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.37;MQ0=0;QD=18.68;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1322,144,0 chrXI 313349 . T C 1236 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=0;QD=18.73;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1269,141,0 chrXI 313365 . C T 1084 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.85;MQ0=0;QD=17.48;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1117,123,0 chrXI 313367 . G A 1050 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.36;MQ0=0;QD=16.67;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1083,120,0 chrXI 313486 . G A 1888 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.21;MQ0=0;QD=19.07;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1921,204,0 chrXI 313488 . T G 1786 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.74;MQ0=0;QD=18.41;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1819,204,0 chrXI 313507 . T C 1386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=72;Dels=0.00;FS=20.273;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=29.25;MQ0=0;MQRankSum=-2.621;QD=19.25;ReadPosRankSum=2.846;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:3,69:72:99:1419,159,0 chrXI 313513 . T G 1293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=6.154;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;MQRankSum=-1.312;QD=19.59;ReadPosRankSum=1.680;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1326,150,0 chrXI 313523 . T A 1014 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=0;QD=19.88;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1047,117,0 chrXI 313544 . A C 777 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.35;MQ0=0;QD=22.85;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:93:810,93,0 chrXI 313602 . G A 439 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.97;MQ0=0;QD=19.09;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:48:472,48,0 chrXI 313695 . G C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.68;MQ0=2;QD=2.23;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:6:49,6,0 chrXI 313738 . A G 243 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.30;MQ0=2;QD=10.57;SB=-9.798e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:33:276,33,0 chrXI 313757 . C T 326 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.98;MQ0=1;QD=9.59;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:39:359,39,0 chrXI 313761 . C T 326 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.26;MQ0=0;QD=9.06;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:39:359,39,0 chrXI 313827 . C T 152.13 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.66;MQ0=0;QD=7.24;SB=-8.707e+01 GT:AD:DP:GQ:PL 1/1:0,20:21:18:185,18,0 chrXI 313985 . G A 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.537;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=34.19;MQ0=0;MQRankSum=-0.148;QD=22.09;ReadPosRankSum=0.792;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1579,165,0 chrXI 313997 . T C 1789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=3.661;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=34.81;MQ0=0;MQRankSum=0.811;QD=22.65;ReadPosRankSum=1.644;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1822,198,0 chrXI 314119 . G C 2554 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.88;MQ0=0;QD=23.87;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2587,288,0 chrXI 314126 . G A 2207 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.32;MQ0=0;QD=22.07;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2240,255,0 chrXI 314131 . T C 2224 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.76;MQ0=0;QD=24.17;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2257,258,0 chrXI 314163 . A G 1339 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=25.64;MQ0=0;QD=21.60;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1372,156,0 chrXI 314522 . T G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=9.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:51,6,0 chrXI 314523 . C A 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=2.81;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:6:6:48,6,0 chrXI 314524 . A C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=3.30;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:51,6,0 chrXI 314694 . A G 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;MQRankSum=-0.100;QD=22.02;ReadPosRankSum=1.703;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2720,294,0 chrXI 314713 . C T 2226 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;QD=21.61;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2259,246,0 chrXI 314752 . T C 2101 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=20.01;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2134,240,0 chrXI 314787 . C T 2202 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=20.39;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2235,240,0 chrXI 314820 . T C 2485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.822;QD=20.71;ReadPosRankSum=1.673;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2518,276,0 chrXI 314862 . C T 2977 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=24.01;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3010,324,0 chrXI 314906 . A G 3651.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=25.18;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3651,396,0 chrXI 315068 . G A 4296.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.26;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4296,457,0 chrXI 315069 . A G 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.393;DP=211;Dels=0.00;FS=16.584;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.650;QD=20.13;ReadPosRankSum=3.351;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:4,204:211:99:4248,462,0 chrXI 315107 . G C 3461.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.12;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3461,375,0 chrXI 315617 . A G 3983.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=141.5199;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=23.99;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3983,432,0 chrXI 315654 . G C 4082.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.01;FS=0.000;HaplotypeScore=25.2602;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=22.43;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,176:181:99:4082,438,0 chrXI 315726 . A G 4220.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.961;DP=181;Dels=0.00;FS=2.432;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-0.816;QD=23.31;ReadPosRankSum=2.961;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:3,177:181:99:4220,450,0 chrXI 315777 . A G 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.103;DP=138;Dels=0.00;FS=2.413;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-1.466;QD=19.62;ReadPosRankSum=3.395;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:4,134:138:99:2741,297,0 chrXI 315805 . G A 2492 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=20.10;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2525,261,0 chrXI 315840 . G A 1815 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4774;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=17.29;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1848,195,0 chrXI 315844 . T C 1657 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.246;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9001;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;MQRankSum=0.987;QD=15.34;ReadPosRankSum=1.117;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:1690,195,0 chrXI 315847 . A G 1673 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.9336;MLEAC=2;MLEAF=1.00;MQ=32.63;MQ0=0;MQRankSum=0.640;QD=15.07;ReadPosRankSum=1.420;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1706,186,0 chrXI 315867 . A G 1577 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;QD=15.61;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1610,174,0 chrXI 315893 . G T 1268 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=0;QD=15.10;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1301,141,0 chrXI 315895 . C T 1330 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.13;MQ0=0;QD=15.47;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1363,147,0 chrXI 315903 . C T 1242 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.15;MQ0=0;QD=14.44;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1275,141,0 chrXI 315904 . T A 1221 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.15;MQ0=0;QD=14.20;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1254,141,0 chrXI 315915 . A G 1199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=90;Dels=0.00;FS=2.966;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=0;MQRankSum=-0.651;QD=13.32;ReadPosRankSum=2.394;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:2,87:90:99:1232,132,0 chrXI 316100 . A T 1507 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=23.92;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1540,159,0 chrXI 316142 . T C 1563 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=24.05;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1596,174,0 chrXI 316198 . C T 1585 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=22.64;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1618,174,0 chrXI 316238 . A T 1248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=108.3263;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;MQRankSum=-1.083;QD=19.50;ReadPosRankSum=1.678;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1281,132,0 chrXI 316252 . T C 1020 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;QD=17.29;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1053,120,0 chrXI 316332 . A G 639 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=13.60;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:72:672,72,0 chrXI 316346 . A G 747 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=13.83;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:84:780,84,0 chrXI 316362 . C A 834 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=16.35;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:867,93,0 chrXI 316511 . G A 2173 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=24.69;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2206,231,0 chrXI 316707 . A G 3630.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.53;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3630,399,0 chrXI 316845 . A G 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.693;DP=182;Dels=0.00;FS=5.692;HaplotypeScore=22.5916;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=0.268;QD=21.64;ReadPosRankSum=2.838;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:3,177:182:99:3939,426,0 chrXI 317019 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.02;FS=0.000;HaplotypeScore=30.5264;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=21.70;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3493,393,0 chrXI 317059 . G A 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=143.1081;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;MQRankSum=0.312;QD=21.13;ReadPosRankSum=1.538;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3402,360,0 chrXI 317287 . C A 5516.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=25.78;SB=-3.013e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5516,571,0 chrXI 317375 . A G 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=156;Dels=0.00;FS=2.723;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.971;QD=21.87;ReadPosRankSum=2.402;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3411,375,0 chrXI 317506 . A T 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=177;Dels=0.00;FS=6.061;HaplotypeScore=11.0810;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.233;QD=22.29;ReadPosRankSum=2.904;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:3945,420,0 chrXI 317549 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.7058;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.65;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,129:134:99:3068,321,0 chrXI 317644 . G A 3764.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=25.61;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3764,394,0 chrXI 317671 . G A 4700.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.87;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4700,490,0 chrXI 317712 . C G 4185.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.1839;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.91;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4185,444,0 chrXI 321711 . C T 3746.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.81;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3746,402,0 chrXI 323019 . A T 1855 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1888,204,0 chrXI 326198 . G C 1606 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1639,174,0 chrXI 326284 . G C 700 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:78:733,78,0 chrXI 328028 . C G 7572.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=17.8538;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.75;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:0,303:306:99:7572,834,0 chrXI 328619 . A T 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.1767;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.830;QD=22.83;ReadPosRankSum=1.661;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3333,363,0 chrXI 329802 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1438,153,0 chrXI 331388 . A G 2388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.508;DP=110;Dels=0.00;FS=3.522;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.834;QD=21.71;ReadPosRankSum=1.668;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2421,276,0 chrXI 333502 . G A 4748.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.2355;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4748,505,0 chrXI 335429 . C T 3103 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.16;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3136,327,0 chrXI 336636 . T C 4647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.286;DP=191;Dels=0.00;FS=2.413;HaplotypeScore=12.1132;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.206;QD=24.33;ReadPosRankSum=3.378;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:4,187:191:99:4647,510,0 chrXI 337602 . T C 5731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=341;Dels=0.00;FS=7.410;HaplotypeScore=31.4875;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.546;QD=16.81;ReadPosRankSum=1.691;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,335:341:99:5731,618,0 chrXI 337772 . T C 3677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.760;DP=184;Dels=0.00;FS=5.739;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.056;QD=19.98;ReadPosRankSum=2.961;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:3,177:184:99:3677,396,0 chrXI 338730 . A T 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.716;QD=21.00;ReadPosRankSum=2.914;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:3,79:83:99:1776,189,0 chrXI 338893 . G A 2145 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2178,231,0 chrXI 339536 . A G 2417 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.24;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2450,264,0 chrXI 341753 . A T 5512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=229;Dels=0.00;FS=15.957;HaplotypeScore=10.3108;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.557;QD=24.07;ReadPosRankSum=2.899;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:3,226:229:99:5512,577,0 chrXI 344249 . C A 3754.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.0763;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3754,399,0 chrXI 350099 . G A 3931.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3931,403,0 chrXI 351593 . C A 5251.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=18.7225;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.43;SB=-3.196e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:5251,573,0 chrXI 351752 . A G 5211.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=260;Dels=0.00;FS=6.027;HaplotypeScore=7.4955;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.379;QD=20.04;ReadPosRankSum=2.910;SB=-3.019e+03 GT:AD:DP:GQ:PL 1/1:3,254:260:99:5211,585,0 chrXI 351755 . A G 5374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.149;DP=260;Dels=0.00;FS=15.188;HaplotypeScore=8.4353;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-0.742;QD=20.67;ReadPosRankSum=4.143;SB=-3.289e+03 GT:AD:DP:GQ:PL 1/1:6,251:260:99:5374,594,0 chrXI 351788 . A G 4203.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.054;DP=227;Dels=0.00;FS=9.136;HaplotypeScore=26.1713;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=0.325;QD=18.52;ReadPosRankSum=3.069;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:4,219:227:99:4203,456,0 chrXI 351869 . A G 5319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=15.8037;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-1.545;QD=20.07;ReadPosRankSum=1.665;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:1,258:265:99:5319,582,0 chrXI 351893 . C A 5399.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.01;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:5399,594,0 chrXI 352346 . T A 5690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.676;DP=246;Dels=0.00;FS=11.431;HaplotypeScore=16.9484;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.984;QD=23.13;ReadPosRankSum=3.791;SB=-2.864e+03 GT:AD:DP:GQ:PL 1/1:5,241:246:99:5690,607,0 chrXI 352550 . A G 4100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.7798;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.161;QD=22.40;ReadPosRankSum=1.694;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4100,441,0 chrXI 352820 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.3293;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.82;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3978,438,0 chrXI 353039 . G A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.27;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3585,378,0 chrXI 353056 . T C 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-0.824;QD=21.09;ReadPosRankSum=1.711;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3480,387,0 chrXI 353091 . C T 3985.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.2298;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.51;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3985,417,0 chrXI 353277 . T C 4257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=183;Dels=0.00;FS=6.286;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.047;QD=23.26;ReadPosRankSum=2.382;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4257,462,0 chrXI 353409 . C T 3004 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.30;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3037,315,0 chrXI 353417 . C T 3170 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.13;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3203,342,0 chrXI 353473 . A C 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=165;Dels=0.00;FS=3.118;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.021;QD=19.87;ReadPosRankSum=1.669;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3279,363,0 chrXI 353525 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.497;QD=22.58;ReadPosRankSum=1.684;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3262,366,0 chrXI 353672 . A G 3804.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.48;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3804,432,0 chrXI 353705 . G A 3668.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=25.65;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3668,384,0 chrXI 353786 . G C 2768 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.66;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2801,309,0 chrXI 354092 . T C 2974 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.87;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3007,336,0 chrXI 354272 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.209;QD=22.64;ReadPosRankSum=1.710;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3623,387,0 chrXI 354293 . G A 3023 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.3260;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.29;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3056,336,0 chrXI 354596 . C T 4416.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=17.5490;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.12;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4416,474,0 chrXI 354752 . C T 5832.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=16.2973;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.00;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5832,610,0 chrXI 354797 . T C 5471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=236;Dels=0.00;FS=5.711;HaplotypeScore=9.5978;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=1.932;QD=23.18;ReadPosRankSum=2.936;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:3,233:236:99:5471,586,0 chrXI 354822 . C T 4809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.7626;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=1.083;QD=23.01;ReadPosRankSum=1.332;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4809,508,0 chrXI 355074 . C A 1738 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=17.38;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1771,192,0 chrXI 355082 . C A 1528 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.49;MQ0=0;QD=16.08;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1561,165,0 chrXI 355096 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=0;QD=15.54;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1463,153,0 chrXI 355103 . G C 1515 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=0;QD=15.46;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1548,168,0 chrXI 355110 . G A 1582 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=15.82;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1615,171,0 chrXI 355113 . A C 1535 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;MQRankSum=1.166;QD=14.76;ReadPosRankSum=1.699;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1568,177,0 chrXI 355168 . A T 1641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.490;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.9612;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=0;MQRankSum=0.000;QD=15.48;ReadPosRankSum=1.405;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1674,177,0 chrXI 355173 . C T 1662 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=66.7296;MLEAC=2;MLEAF=1.00;MQ=31.14;MQ0=0;QD=15.53;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1695,177,0 chrXI 355187 . A G 177.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.812;DP=102;Dels=0.00;FS=0.918;HaplotypeScore=8.8363;MLEAC=1;MLEAF=0.500;MQ=33.26;MQ0=0;MQRankSum=-1.094;QD=1.74;ReadPosRankSum=-5.512;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:80,22:102:49:207,0,49 chrXI 355188 . A G 68.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.438;DP=101;Dels=0.00;FS=0.893;HaplotypeScore=8.0476;MLEAC=1;MLEAF=0.500;MQ=34.11;MQ0=0;MQRankSum=1.214;QD=0.67;ReadPosRankSum=5.837;SB=-8.849e+02 GT:AD:DP:GQ:PL 0/1:23,76:101:98:98,0,134 chrXI 355225 . A G 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.928;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;MQRankSum=-1.567;QD=15.44;ReadPosRankSum=1.691;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1330,150,0 chrXI 355235 . C T 1513 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=17.80;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1546,162,0 chrXI 356064 . G C 4844.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.2967;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.74;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4844,531,0 chrXI 356199 . A G 3727.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3727,402,0 chrXI 356442 . A T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3613,376,0 chrXI 357004 . A G 9420.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=446;Dels=0.00;FS=6.033;HaplotypeScore=21.3499;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.587;QD=21.12;ReadPosRankSum=2.903;SB=-5.643e+03 GT:AD:DP:GQ:PL 1/1:3,441:446:99:9420,1039,0 chrXI 357158 . C T 10420.01 filter AC=2;AF=1.00;AN=2;DP=456;Dels=0.00;FS=0.000;HaplotypeScore=36.5733;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.85;SB=-5.435e+03 GT:AD:DP:GQ:PL 1/1:0,454:456:99:10420,1123,0 chrXI 357768 . G A 4932.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.8787;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.71;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4932,537,0 chrXI 357992 . A G 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.675;QD=24.82;ReadPosRankSum=1.696;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2391,258,0 chrXI 358463 . T C 2637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.104;QD=22.54;ReadPosRankSum=1.703;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2670,297,0 chrXI 359142 . T C 3837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=3.664;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.205;QD=20.52;ReadPosRankSum=1.620;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3837,441,0 chrXI 361878 . A C 3770.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3770,402,0 chrXI 362247 . C T 4012.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.6666;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.46;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4012,432,0 chrXI 364406 . A G 1350 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.6420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1383,150,0 chrXI 364837 . T C 4998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=221;Dels=0.00;FS=3.030;HaplotypeScore=8.1802;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.831;QD=22.62;ReadPosRankSum=2.427;SB=-2.869e+03 GT:AD:DP:GQ:PL 1/1:2,218:221:99:4998,543,0 chrXI 365364 . A T 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=116;Dels=0.00;FS=3.001;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.308;QD=23.42;ReadPosRankSum=2.407;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2750,284,0 chrXI 372765 . G T 3777.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3777,394,0 chrXI 372830 . G A 3603.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3603,381,0 chrXI 373181 . C T 5452.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.70;SB=-3.018e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5452,586,0 chrXI 373211 . A G 5088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=222;Dels=0.00;FS=3.026;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-1.071;QD=22.92;ReadPosRankSum=2.416;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:2,217:222:99:5088,558,0 chrXI 373448 . G A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.0066;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.25;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3426,363,0 chrXI 373454 . A G 3299.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.33;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3299,363,0 chrXI 373559 . C T 4491.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=17.5467;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.91;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4491,477,0 chrXI 373638 . T C 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=169;Dels=0.00;FS=2.880;HaplotypeScore=12.9701;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-0.402;QD=23.98;ReadPosRankSum=2.420;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:4053,438,0 chrXI 374006 . A C 4934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.751;DP=222;Dels=0.00;FS=5.779;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.081;QD=22.23;ReadPosRankSum=2.923;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:3,219:222:99:4934,546,0 chrXI 374056 . A G 4828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=213;Dels=0.00;FS=2.685;HaplotypeScore=11.0679;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=1.032;QD=22.67;ReadPosRankSum=2.403;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4828,519,0 chrXI 374090 . A G 4108.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.3992;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.51;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4108,468,0 chrXI 374207 . C A 4389.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.4205;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.22;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4389,468,0 chrXI 374257 . T C 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=1.240;QD=23.10;ReadPosRankSum=1.712;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:1,168:172:99:3973,435,0 chrXI 374280 . A G 3060 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=19.37;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3093,339,0 chrXI 374295 . G C 2589 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=17.73;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,139:146:99:2622,300,0 chrXI 374363 . C T 2665 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=18.38;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2698,288,0 chrXI 374399 . A G 3121 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.4962;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.39;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3154,363,0 chrXI 374745 . T C 4113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=175;Dels=0.00;FS=3.350;HaplotypeScore=15.2375;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.292;QD=23.50;ReadPosRankSum=1.692;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:4113,441,0 chrXI 375750 . A G 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=121;Dels=0.00;FS=2.986;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.698;QD=20.45;ReadPosRankSum=2.345;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:2,117:121:99:2508,276,0 chrXI 375794 . A G 3442.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.64;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3442,372,0 chrXI 376286 . A C 3997.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.9609;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.10;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3997,435,0 chrXI 376508 . T C 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=176;Dels=0.00;FS=3.018;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=-0.021;QD=22.50;ReadPosRankSum=2.393;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3960,429,0 chrXI 376721 . A G 4073.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.41;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4073,462,0 chrXI 377373 . A G 5112.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=6.5028;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.34;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5112,550,0 chrXI 377618 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=141;Dels=0.00;FS=3.034;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.712;QD=23.43;ReadPosRankSum=2.397;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3303,360,0 chrXI 377781 . C A 3989.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.07;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3989,415,0 chrXI 377954 . A C 3579.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.18;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3579,405,0 chrXI 377975 . C G 3888.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.02;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3888,441,0 chrXI 378422 . A G 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.993;DP=138;Dels=0.00;FS=10.920;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.517;QD=21.40;ReadPosRankSum=3.503;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:6,132:138:99:2986,302,0 chrXI 378458 . A G 2606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=122;Dels=0.00;FS=3.042;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-0.978;QD=21.36;ReadPosRankSum=2.369;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2639,285,0 chrXI 378519 . T G 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=6.402;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-1.188;QD=23.68;ReadPosRankSum=2.417;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3599,387,0 chrXI 378531 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=145;Dels=0.00;FS=6.006;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.299;QD=22.77;ReadPosRankSum=2.896;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3302,360,0 chrXI 378602 . T G 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=109;Dels=0.00;FS=3.047;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=2.201;QD=22.84;ReadPosRankSum=2.359;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2523,270,0 chrXI 378653 . T C 2566 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.12;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2599,285,0 chrXI 378664 . A T 2706 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=22.00;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2739,291,0 chrXI 378856 . T C 2555 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=22.03;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2588,279,0 chrXI 378899 . C T 1889 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=20.99;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1922,210,0 chrXI 378901 . T G 1801 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;QD=19.58;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1834,207,0 chrXI 378934 . A G 1507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;MQRankSum=-0.406;QD=18.60;ReadPosRankSum=1.689;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1540,171,0 chrXI 378957 . T C 1359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=83;Dels=0.00;FS=10.371;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;MQRankSum=-0.256;QD=16.37;ReadPosRankSum=2.818;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1392,159,0 chrXI 378962 . T C 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=87;Dels=0.01;FS=6.279;HaplotypeScore=6.0771;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;MQRankSum=-1.504;QD=15.70;ReadPosRankSum=2.278;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1399,162,0 chrXI 378999 . T C 1660 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=15.37;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1693,195,0 chrXI 379000 . T G 1673 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=15.64;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:1706,195,0 chrXI 379146 . T G 953 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.32;MQ0=0;QD=8.36;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:986,111,0 chrXI 379149 . G A 977 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.78;MQ0=0;QD=8.65;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:1010,114,0 chrXI 379173 . A G 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=4.771;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;MQRankSum=-1.706;QD=14.74;ReadPosRankSum=1.128;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:1979,225,0 chrXI 379215 . T C 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;MQRankSum=-0.616;QD=21.11;ReadPosRankSum=1.709;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3179,348,0 chrXI 379283 . G A 3353.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=23.78;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3353,348,0 chrXI 379287 . C G 2857 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=20.41;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2890,327,0 chrXI 379301 . A G 3119 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=21.36;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3152,354,0 chrXI 379423 . A G 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;MQRankSum=0.232;QD=25.22;ReadPosRankSum=1.710;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3960,429,0 chrXI 379434 . G A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=23.63;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3426,372,0 chrXI 379453 . T G 3306.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=24.67;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3306,354,0 chrXI 379628 . T A 1150 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.55;MQ0=0;QD=18.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1183,126,0 chrXI 379650 . C T 959 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.31;MQ0=0;QD=18.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:992,105,0 chrXI 379891 . A T 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;MQRankSum=-1.074;QD=22.78;ReadPosRankSum=1.688;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1833,186,0 chrXI 379901 . T C 1476 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.43;MQ0=0;QD=19.42;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1509,180,0 chrXI 380146 . T C 4975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.166;QD=25.64;ReadPosRankSum=2.964;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:3,191:194:99:4975,546,0 chrXI 380172 . A T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6228;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.68;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3379,378,0 chrXI 380511 . G A 4501.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.07;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4501,469,0 chrXI 380602 . C T 3724.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3724,393,0 chrXI 380707 . A C 4897.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=16.0308;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.57;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4897,546,0 chrXI 381058 . G A 11144.01 filter AC=2;AF=1.00;AN=2;DP=493;Dels=0.00;FS=0.000;HaplotypeScore=31.4268;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.60;SB=-3.973e+03 GT:AD:DP:GQ:PL 1/1:0,493:493:99:11144,1198,0 chrXI 381581 . T A 5506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.393;DP=319;Dels=0.00;FS=19.688;HaplotypeScore=12.0092;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;MQRankSum=-3.966;QD=17.26;ReadPosRankSum=2.793;SB=-3.645e+03 GT:AD:DP:GQ:PL 1/1:8,311:319:99:5506,583,0 chrXI 381726 . T C 8014.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.392;DP=375;Dels=0.00;FS=12.253;HaplotypeScore=17.2959;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=-0.613;QD=21.37;ReadPosRankSum=3.341;SB=-4.671e+03 GT:AD:DP:GQ:PL 1/1:4,369:375:99:8014,880,0 chrXI 382255 . A T 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.453;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2572;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=0.618;QD=14.68;ReadPosRankSum=2.441;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:2543,279,0 chrXI 382263 . G A 2542 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.02;FS=0.000;HaplotypeScore=6.0542;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=17.18;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2575,273,0 chrXI 382520 . G A 485 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.890;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=16.8889;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;MQRankSum=1.639;QD=13.11;ReadPosRankSum=1.264;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:1,36:37:54:518,54,0 chrXI 382523 . G A 453 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.896;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=14.4976;MLEAC=2;MLEAF=1.00;MQ=33.19;MQ0=0;MQRankSum=1.614;QD=15.62;ReadPosRankSum=1.016;SB=-6.587e-03 GT:AD:DP:GQ:PL 1/1:1,28:29:51:486,51,0 chrXI 383052 . G A 7685.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=15.9743;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.01;SB=-4.396e+03 GT:AD:DP:GQ:PL 1/1:0,333:334:99:7685,837,0 chrXI 383133 . A G 6140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.722;DP=333;Dels=0.00;FS=3.393;HaplotypeScore=6.6584;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-0.657;QD=18.44;ReadPosRankSum=1.690;SB=-3.928e+03 GT:AD:DP:GQ:PL 1/1:1,332:333:99:6140,693,0 chrXI 383136 . A G 6311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=359;Dels=0.00;FS=13.331;HaplotypeScore=9.1516;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-2.393;QD=17.58;ReadPosRankSum=3.297;SB=-4.254e+03 GT:AD:DP:GQ:PL 1/1:4,355:359:99:6311,720,0 chrXI 383250 . C T 8223.01 PASS AC=2;AF=1.00;AN=2;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=26.5144;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.49;SB=-4.476e+03 GT:AD:DP:GQ:PL 1/1:0,348:350:99:8223,883,0 chrXI 383295 . G A 7779.01 filter AC=2;AF=1.00;AN=2;DP=365;Dels=0.00;FS=0.000;HaplotypeScore=17.5023;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.31;SB=-4.534e+03 GT:AD:DP:GQ:PL 1/1:0,364:365:99:7779,858,0 chrXI 383334 . T G 7586.01 filter AC=2;AF=1.00;AN=2;DP=364;Dels=0.00;FS=0.000;HaplotypeScore=32.3499;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.84;SB=-4.517e+03 GT:AD:DP:GQ:PL 1/1:0,364:364:99:7586,843,0 chrXI 383487 . G A 6123.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.27;SB=-3.096e+03 GT:AD:DP:GQ:PL 1/1:0,271:275:99:6123,661,0 chrXI 383538 . A G 6833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=318;Dels=0.00;FS=2.842;HaplotypeScore=15.7969;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.214;QD=21.49;ReadPosRankSum=2.387;SB=-3.379e+03 GT:AD:DP:GQ:PL 1/1:2,313:318:99:6833,742,0 chrXI 383652 . G A 4473.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4473,480,0 chrXI 383706 . T C 5420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.975;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=13.9320;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=2.429;QD=22.03;ReadPosRankSum=2.338;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:2,241:246:99:5420,577,0 chrXI 384068 . A G 5998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=16.1612;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.113;QD=19.67;ReadPosRankSum=1.721;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:1,301:305:99:5998,666,0 chrXI 384120 . G A 7114.01 PASS AC=2;AF=1.00;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=23.2833;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.86;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,339:341:99:7114,777,0 chrXI 384150 . A G 7175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.588;DP=342;Dels=0.00;FS=14.214;HaplotypeScore=27.1151;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=1.531;QD=20.98;ReadPosRankSum=5.582;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:11,330:342:99:7175,801,0 chrXI 384196 . C T 5636.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=14.6451;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=21.11;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:5636,592,0 chrXI 384219 . G C 4027.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=18.39;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4027,450,0 chrXI 384228 . C T 3955.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.01;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3955,417,0 chrXI 384453 . T C 5125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=1.209;QD=24.17;ReadPosRankSum=1.699;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:5125,550,0 chrXI 384558 . G A 4198.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=20.58;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4198,439,0 chrXI 384573 . T C 4042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-1.266;QD=19.34;ReadPosRankSum=1.699;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4042,456,0 chrXI 384893 . C T 807 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=23.74;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:90:840,90,0 chrXI 385019 . A G 1009 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=24.61;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1042,111,0 chrXI 385037 . C T 1061 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.58;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1094,114,0 chrXI 385129 . A T 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.890;DP=68;Dels=0.04;FS=73.667;HaplotypeScore=29.6766;MLEAC=1;MLEAF=0.500;MQ=52.48;MQ0=0;MQRankSum=-2.952;QD=0.50;ReadPosRankSum=-5.317;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,24:65:64:64,0,520 chrXI 385341 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=22.20;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2963,315,0 chrXI 385346 . C T 2945 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;QD=23.19;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2978,321,0 chrXI 385392 . A T 2772 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=19.12;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2805,315,0 chrXI 385419 . C T 3437.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=21.62;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3437,357,0 chrXI 385432 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=3.926;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=-0.903;QD=20.12;ReadPosRankSum=1.711;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3280,375,0 chrXI 385436 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=3.993;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=-1.030;QD=21.20;ReadPosRankSum=1.710;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3350,360,0 chrXI 385473 . G A 3422.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=23.44;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3422,355,0 chrXI 385548 . A G 2584 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=19.14;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2617,291,0 chrXI 385580 . A C 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.393;DP=118;Dels=0.03;FS=0.000;HaplotypeScore=375.8381;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;MQRankSum=3.339;QD=0.12;ReadPosRankSum=-3.394;SB=-1.168e+02 GT:AD:DP:GQ:PL 1/1:110,5:115:6:45,6,0 chrXI 385609 . T G 1468 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;QD=11.29;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1501,174,0 chrXI 385688 . G A 3403.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=24.13;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3403,355,0 chrXI 385892 . A G 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.582;QD=22.69;ReadPosRankSum=1.689;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3698,396,0 chrXI 385928 . A C 3597.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.7537;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.06;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3597,396,0 chrXI 386039 . T A 3916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=167;Dels=0.00;FS=6.095;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.054;QD=23.45;ReadPosRankSum=2.874;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3916,411,0 chrXI 386072 . C G 3400.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.61;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3400,369,0 chrXI 386153 . A C 3011 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.09;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3044,327,0 chrXI 386207 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.86;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3680,379,0 chrXI 386520 . A C 4478.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=27.2846;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=17.70;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:4478,498,0 chrXI 386669 . T C 5436.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=10.9243;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.19;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5436,621,0 chrXI 387042 . A G 4136.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.133;DP=221;Dels=0.00;FS=14.163;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;MQRankSum=-2.884;QD=18.71;ReadPosRankSum=4.172;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:6,215:221:99:4136,462,0 chrXI 387050 . C T 3797.01 SnpCluster AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=18.17;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:3797,408,0 chrXI 387052 . A G 3707.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;MQRankSum=-0.631;QD=17.16;ReadPosRankSum=1.716;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:3707,411,0 chrXI 387069 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=216;Dels=0.00;FS=2.916;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;MQRankSum=0.965;QD=15.14;ReadPosRankSum=2.335;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:3270,360,0 chrXI 387089 . C A 2892 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;QD=15.06;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:2925,306,0 chrXI 387148 . G A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.2664;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=16.55;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3310,360,0 chrXI 387224 . A T 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=121;Dels=0.02;FS=0.000;HaplotypeScore=43.4213;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;MQRankSum=-0.073;QD=16.46;ReadPosRankSum=2.408;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2025,222,0 chrXI 387462 . T C 169.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.290;QD=14.09;ReadPosRankSum=1.448;SB=-1.128e+02 GT:AD:DP:GQ:PL 1/1:1,11:12:21:202,21,0 chrXI 387632 . C T 1726 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.64;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1759,183,0 chrXI 387790 . G C 4691.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.4151;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.69;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,194:198:99:4691,516,0 chrXI 388001 . G A 6380.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.44;SB=-3.345e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:6380,658,0 chrXI 388314 . A C 4769.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.85;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4769,522,0 chrXI 388522 . C T 4369.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.87;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4369,457,0 chrXI 388737 . A G 4891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.7073;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.682;QD=23.63;ReadPosRankSum=1.715;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4891,525,0 chrXI 388947 . G T 3008 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=23.87;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3041,321,0 chrXI 389051 . A T 1146 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=22.04;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1179,123,0 chrXI 389074 . A G 738 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.09;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:84:771,84,0 chrXI 389075 . A G 723 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.66;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:84:756,84,0 chrXI 389081 . G A 630 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.53;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:72:663,72,0 chrXI 389086 . T A 630 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.69;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:69:663,69,0 chrXI 389093 . T A 532 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.12;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:60:565,60,0 chrXI 389135 . G A 544 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.09;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,41:45:63:577,63,0 chrXI 389148 . A G 290.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;DP=96;Dels=0.00;FS=86.397;HaplotypeScore=3.5299;MLEAC=1;MLEAF=0.500;MQ=32.71;MQ0=0;MQRankSum=0.951;QD=3.02;ReadPosRankSum=5.346;SB=-2.710e+02 GT:AD:DP:GQ:PL 0/1:25,70:96:99:320,0,220 chrXI 389150 . A T 203.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.079;DP=100;Dels=0.00;FS=77.305;HaplotypeScore=28.1123;MLEAC=1;MLEAF=0.500;MQ=33.40;MQ0=0;MQRankSum=-0.153;QD=2.03;ReadPosRankSum=-6.133;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,26:100:99:233,0,370 chrXI 389222 . A G 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=117;Dels=0.00;FS=9.724;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;MQRankSum=2.147;QD=24.15;ReadPosRankSum=2.854;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2858,312,0 chrXI 389298 . G A 2659 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=23.32;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2692,276,0 chrXI 389361 . C T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=23.83;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3289,354,0 chrXI 389599 . C T 4609.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.01;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4609,487,0 chrXI 389917 . A G 5012.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.71;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,238:242:99:5012,546,0 chrXI 389926 . A G 5346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=247;Dels=0.00;FS=2.872;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-1.108;QD=21.64;ReadPosRankSum=2.370;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:5346,579,0 chrXI 389996 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=19.69;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2967,312,0 chrXI 390146 . A G 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.944;QD=23.69;ReadPosRankSum=1.676;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2971,321,0 chrXI 390188 . T G 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=104;Dels=0.00;FS=6.511;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=1.295;QD=21.80;ReadPosRankSum=1.698;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2300,252,0 chrXI 390261 . G A 2502 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.60;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2535,264,0 chrXI 390536 . C T 3670.01 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=21.59;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3670,385,0 chrXI 390539 . G A 3583.01 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=21.33;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3583,378,0 chrXI 390540 . C T 3634.01 SnpCluster AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=21.76;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3634,376,0 chrXI 390664 . C T 3875.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.48;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3875,406,0 chrXI 390693 . C G 3829.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.93;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3829,417,0 chrXI 390798 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=14.4943;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.92;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3431,381,0 chrXI 391146 . G A 2682 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=25.30;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2715,282,0 chrXI 391161 . C T 2381 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.12;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2414,258,0 chrXI 391712 . C T 4118.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.14;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4118,444,0 chrXI 391758 . T A 4602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=203;Dels=0.00;FS=3.969;HaplotypeScore=11.0987;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=1.646;QD=22.67;ReadPosRankSum=1.663;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4602,487,0 chrXI 391848 . C T 5036.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.3017;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.98;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:5036,538,0 chrXI 391885 . T C 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=196;Dels=0.00;FS=5.723;HaplotypeScore=10.2036;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=2.077;QD=20.71;ReadPosRankSum=2.964;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:3,192:196:99:4059,441,0 chrXI 391941 . A G 4096.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=294;Dels=0.00;FS=6.232;HaplotypeScore=8.2538;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;MQRankSum=-1.402;QD=13.93;ReadPosRankSum=1.720;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:1,293:294:99:4096,450,0 chrXI 391949 . A C 3088 SnpCluster AC=2;AF=1.00;AN=2;DP=271;Dels=0.01;FS=0.000;HaplotypeScore=10.7481;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=0;QD=11.39;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,266:269:99:3121,372,0 chrXI 391951 . G T 3118 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=273;Dels=0.00;FS=9.182;HaplotypeScore=10.7481;MLEAC=2;MLEAF=1.00;MQ=32.61;MQ0=0;MQRankSum=-3.530;QD=11.42;ReadPosRankSum=3.742;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:5,268:273:99:3151,372,0 chrXI 391952 . C T 3085 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.605;DP=272;Dels=0.00;FS=9.142;HaplotypeScore=10.7481;MLEAC=2;MLEAF=1.00;MQ=32.47;MQ0=0;MQRankSum=-3.586;QD=11.34;ReadPosRankSum=3.781;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:5,267:272:99:3118,372,0 chrXI 391953 . A T 3100 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.040;DP=276;Dels=0.00;FS=9.003;HaplotypeScore=10.7481;MLEAC=2;MLEAF=1.00;MQ=33.03;MQ0=0;MQRankSum=-3.489;QD=11.23;ReadPosRankSum=3.647;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:5,271:276:99:3133,374,0 chrXI 391971 . C T 4465.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=39.37;MQ0=0;QD=14.00;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,319:319:99:4465,480,0 chrXI 392106 . C T 7611.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=24.47;SB=-3.981e+03 GT:AD:DP:GQ:PL 1/1:0,311:311:99:7611,817,0 chrXI 392226 . A G 4201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=16.8795;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=1.416;QD=19.01;ReadPosRankSum=2.922;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:3,217:221:99:4201,456,0 chrXI 392410 . A T 1321 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.0347;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.61;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1354,147,0 chrXI 392521 . T C 2428 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.68;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2461,267,0 chrXI 392532 . G T 2834 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.63;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2867,300,0 chrXI 392631 . G A 2621 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.73;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2654,303,0 chrXI 392660 . T A 2494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.6884;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.299;QD=21.32;ReadPosRankSum=1.702;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2527,279,0 chrXI 392685 . G A 3623.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.0380;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.93;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3623,396,0 chrXI 392864 . C T 5701.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=24.8548;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.08;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5701,604,0 chrXI 393129 . G A 4643.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.19;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4643,504,0 chrXI 393144 . T C 4268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=222;Dels=0.00;FS=3.341;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.270;QD=19.23;ReadPosRankSum=1.669;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:1,217:222:99:4268,462,0 chrXI 393210 . G A 4700.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.6265;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.17;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4700,525,0 chrXI 393245 . G A 5190.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.57;SB=-2.938e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5190,561,0 chrXI 393433 . G A 4130.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.47;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4130,433,0 chrXI 393546 . G A 43.97 filter AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=114.5788;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;QD=0.36;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:9:76,9,0 chrXI 393585 . C T 2042 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=14.38;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2075,222,0 chrXI 393593 . A G 2168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=4.058;HaplotypeScore=2.7206;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;MQRankSum=0.025;QD=15.49;ReadPosRankSum=1.707;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2201,246,0 chrXI 393616 . T C 2590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-0.247;QD=18.50;ReadPosRankSum=1.707;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2623,294,0 chrXI 393642 . A G 3010 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6568;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.07;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3043,330,0 chrXI 393718 . A G 3983.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=24.14;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3983,423,0 chrXI 393822 . T C 5086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.686;DP=227;Dels=0.00;FS=11.044;HaplotypeScore=19.2575;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=0.823;QD=22.41;ReadPosRankSum=3.755;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:5,220:227:99:5086,570,0 chrXI 393899 . C T 3710.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.27;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3710,402,0 chrXI 393915 . A G 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=194;Dels=0.00;FS=2.213;HaplotypeScore=11.2092;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.010;QD=19.88;ReadPosRankSum=2.000;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:3,189:194:99:3857,414,0 chrXI 394047 . G A 5536.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.4849;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.39;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:5536,586,0 chrXI 394572 . A T 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.825;QD=21.37;ReadPosRankSum=1.705;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2726,303,0 chrXI 394878 . T C 4015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.993;QD=24.48;ReadPosRankSum=1.711;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4015,432,0 chrXI 395017 . T C 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=4.543;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=0.211;QD=18.87;ReadPosRankSum=1.662;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2845,324,0 chrXI 395025 . A C 2857 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=18.31;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2890,315,0 chrXI 395041 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.75;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3221,330,0 chrXI 395065 . A G 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.144;DP=181;Dels=0.00;FS=3.004;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-0.618;QD=16.94;ReadPosRankSum=2.422;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:2,175:181:99:3100,348,0 chrXI 395161 . A G 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=176;Dels=0.00;FS=3.738;HaplotypeScore=17.4508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.257;QD=22.74;ReadPosRankSum=1.712;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4002,432,0 chrXI 395566 . A G 4058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.3902;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.116;QD=22.17;ReadPosRankSum=1.674;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:4058,435,0 chrXI 395650 . T C 5094.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=13.4322;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.05;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5094,567,0 chrXI 395770 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.86;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3345,351,0 chrXI 395794 . C T 3621.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.30;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3621,384,0 chrXI 396036 . A G 2957 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.85;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2990,324,0 chrXI 396283 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3409,369,0 chrXI 396469 . G T 4960.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=14.0139;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.14;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4960,534,0 chrXI 396726 . C G 6372.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=15.1282;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.60;SB=-3.074e+03 GT:AD:DP:GQ:PL 1/1:0,280:282:99:6372,691,0 chrXI 396781 . G A 7756.01 PASS AC=2;AF=1.00;AN=2;DP=344;Dels=0.00;FS=0.000;HaplotypeScore=15.7071;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.55;SB=-2.965e+03 GT:AD:DP:GQ:PL 1/1:0,344:344:99:7756,835,0 chrXI 397159 . G A 1922 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.67;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1955,204,0 chrXI 397458 . C T 3064 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=25.75;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3097,321,0 chrXI 397509 . G A 4284.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.9207;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.79;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4284,471,0 chrXI 397560 . G A 5220.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.20;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5220,553,0 chrXI 397710 . A G 2976 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=18.96;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3009,324,0 chrXI 397717 . C T 2897 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.4602;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=18.45;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:2930,312,0 chrXI 397723 . T C 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=165;Dels=0.00;FS=10.379;HaplotypeScore=6.2253;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=-0.547;QD=18.38;ReadPosRankSum=2.420;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3065,327,0 chrXI 397781 . C T 3916.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.5130;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.58;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:3916,406,0 chrXI 397815 . G A 3588.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.43;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3588,390,0 chrXI 397890 . A G 2248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=116;Dels=0.01;FS=3.044;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.758;QD=19.38;ReadPosRankSum=2.406;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:2,110:115:99:2281,243,0 chrXI 397895 . C T 2386 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.93;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2419,255,0 chrXI 397941 . C T 2761 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=20.92;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2794,288,0 chrXI 397947 . C T 2629 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=20.54;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2662,276,0 chrXI 397992 . A G 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=131;Dels=0.00;FS=3.043;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.047;QD=19.66;ReadPosRankSum=2.393;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2608,288,0 chrXI 398635 . G A 2258 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.81;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2291,249,0 chrXI 398874 . C G 2400 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9342;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2433,258,0 chrXI 398989 . T C 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=135;Dels=0.00;FS=3.008;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.257;QD=22.30;ReadPosRankSum=2.413;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:3043,330,0 chrXI 399060 . G A 3924.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.82;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3924,403,0 chrXI 399815 . A G 4403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.240;QD=23.30;ReadPosRankSum=1.658;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4403,468,0 chrXI 399858 . T C 3976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=183;Dels=0.00;FS=3.624;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.780;QD=21.73;ReadPosRankSum=1.694;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3976,435,0 chrXI 399903 . G A 3317.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.20;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3317,351,0 chrXI 399930 . T C 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=3.418;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.776;QD=20.99;ReadPosRankSum=1.708;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3098,345,0 chrXI 399948 . T C 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.465;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=0.608;QD=19.91;ReadPosRankSum=1.617;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3039,330,0 chrXI 399987 . G A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.6996;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.70;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3526,372,0 chrXI 400068 . C T 5790.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.64;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5790,613,0 chrXI 400152 . A G 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=181;Dels=0.00;FS=10.845;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.735;QD=21.78;ReadPosRankSum=2.904;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:3,175:181:99:3942,429,0 chrXI 400341 . C T 4939.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.8294;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.87;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4939,526,0 chrXI 400358 . C T 4991.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.32;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4991,517,0 chrXI 400402 . T A 4750.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.5421;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.73;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4750,502,0 chrXI 400521 . G A 5625.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.4516;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.77;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5625,615,0 chrXI 400569 . T G 5234.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.76;SB=-2.988e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5234,573,0 chrXI 400712 . C T 4910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=204;Dels=0.00;FS=8.188;HaplotypeScore=17.7332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.225;QD=24.07;ReadPosRankSum=0.419;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:2,200:204:99:4910,514,0 chrXI 401736 . C T 3781.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.64;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3781,402,0 chrXI 401769 . C G 3537.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.97;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3537,381,0 chrXI 401890 . C G 5890.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.19;SB=-3.101e+03 GT:AD:DP:GQ:PL 1/1:0,251:254:99:5890,636,0 chrXI 402355 . C T 5579.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.36;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5579,586,0 chrXI 402427 . C T 5303.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.0093;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.67;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5303,544,0 chrXI 402484 . T C 4068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=204;Dels=0.00;FS=3.937;HaplotypeScore=15.7076;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.247;QD=19.94;ReadPosRankSum=1.715;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4068,435,0 chrXI 402723 . A G 4513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=211;Dels=0.00;FS=3.052;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.396;QD=21.39;ReadPosRankSum=1.699;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:4513,495,0 chrXI 403407 . G T 5436.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=17.1366;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.65;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5436,585,0 chrXI 403482 . A G 5190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=222;Dels=0.00;FS=2.667;HaplotypeScore=19.7575;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.472;QD=23.38;ReadPosRankSum=2.427;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:2,219:222:99:5190,561,0 chrXI 403713 . T C 5571.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=17.2247;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.74;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5571,598,0 chrXI 404302 . T C 5239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=243;Dels=0.00;FS=4.935;HaplotypeScore=8.6874;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.518;QD=21.56;ReadPosRankSum=1.647;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:5239,570,0 chrXI 404344 . A G 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.2384;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.152;QD=21.40;ReadPosRankSum=1.715;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4473,480,0 chrXI 404440 . C T 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=3.069;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.600;QD=24.38;ReadPosRankSum=1.363;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3681,393,0 chrXI 404696 . G A 2641 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2674,288,0 chrXI 404773 . G A 2867 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.89;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,127:131:99:2900,306,0 chrXI 404905 . C G 3507.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3507,399,0 chrXI 405007 . C T 4451.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.73;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4451,457,0 chrXI 405331 . C A 3810.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=20.82;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3810,411,0 chrXI 405337 . G A 3725.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=20.47;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3725,402,0 chrXI 405361 . A C 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=173;Dels=0.00;FS=4.502;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.544;QD=19.64;ReadPosRankSum=1.309;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3397,372,0 chrXI 405409 . G A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.5152;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.87;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3577,387,0 chrXI 405592 . G A 3826.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.5909;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.33;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3826,420,0 chrXI 405871 . C G 3701.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.30;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3701,402,0 chrXI 405960 . A G 4269.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.26;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4269,456,0 chrXI 406060 . G A 2599 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.96;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2632,279,0 chrXI 406069 . G A 2550 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.56;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2583,270,0 chrXI 406357 . T C 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.155;QD=23.83;ReadPosRankSum=2.378;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2488,270,0 chrXI 406489 . A G 1921 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.88;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1954,222,0 chrXI 406558 . A G 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=141;Dels=0.00;FS=3.027;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.307;QD=21.51;ReadPosRankSum=2.309;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3066,348,0 chrXI 406897 . G A 3977.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.4047;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.10;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3977,417,0 chrXI 407067 . A G 4024.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.5070;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.86;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4024,432,0 chrXI 407104 . T G 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=3.058;HaplotypeScore=7.4409;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-0.533;QD=20.01;ReadPosRankSum=1.675;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3642,396,0 chrXI 407116 . T C 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=3.601;HaplotypeScore=3.5227;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-1.464;QD=18.24;ReadPosRankSum=1.617;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3302,375,0 chrXI 407274 . A G 2586 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.20;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2619,282,0 chrXI 407314 . T C 2968 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.48;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3001,330,0 chrXI 407572 . T C 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=153;Dels=0.00;FS=5.862;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.415;QD=22.56;ReadPosRankSum=2.836;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3452,372,0 chrXI 408493 . T C 5258.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.4817;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.745;QD=24.46;ReadPosRankSum=1.716;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:5258,588,0 chrXI 408636 . T C 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=186;Dels=0.00;FS=3.695;HaplotypeScore=12.2255;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.507;QD=22.61;ReadPosRankSum=1.620;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4205,471,0 chrXI 408873 . C T 5507.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.70;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5507,583,0 chrXI 408938 . C T 4188.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.40;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4188,439,0 chrXI 408960 . C G 3922.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.9008;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.23;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:3922,435,0 chrXI 409333 . A G 2271 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.4064;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.03;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2304,258,0 chrXI 409377 . C T 2182 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.73;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2215,237,0 chrXI 409808 . A G 1827 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1860,201,0 chrXI 409950 . C T 3643.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.02;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3643,390,0 chrXI 410208 . C T 4963.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4963,534,0 chrXI 410250 . G A 4118.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4118,444,0 chrXI 410346 . A G 3915.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.17;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3915,414,0 chrXI 410388 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.4580;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.11;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3420,363,0 chrXI 410472 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.0613;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.898;QD=21.87;ReadPosRankSum=1.625;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3565,381,0 chrXI 410677 . A G 4047.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.53;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4047,444,0 chrXI 410730 . C T 3870.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=21.86;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3870,420,0 chrXI 410781 . T G 4239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.1384;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=0.801;QD=20.88;ReadPosRankSum=1.715;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4239,486,0 chrXI 410796 . A G 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=185;Dels=0.00;FS=3.563;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-1.280;QD=20.96;ReadPosRankSum=1.638;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3877,444,0 chrXI 410848 . T C 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=177;Dels=0.00;FS=7.163;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.274;QD=21.74;ReadPosRankSum=2.365;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:2,173:177:99:3848,417,0 chrXI 410991 . A G 3936.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.4890;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;MQRankSum=0.039;QD=22.36;ReadPosRankSum=1.693;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3936,426,0 chrXI 410995 . T C 3594.01 SnpCluster AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=21.52;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3594,411,0 chrXI 411001 . C A 3639.01 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=22.19;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3639,381,0 chrXI 411118 . G A 4142.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4142,433,0 chrXI 411183 . T C 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=149;Dels=0.00;FS=2.959;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.278;QD=23.33;ReadPosRankSum=2.399;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:2,144:149:99:3476,381,0 chrXI 411351 . A G 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.244;QD=21.27;ReadPosRankSum=1.708;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3053,333,0 chrXI 411456 . T G 3960.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=9.3828;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.86;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3960,432,0 chrXI 411637 . G A 3941.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.7051;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.19;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3941,435,0 chrXI 411643 . A G 3725.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.47;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3725,432,0 chrXI 411756 . T C 4112.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.8750;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.99;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4112,447,0 chrXI 411997 . T C 3685.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.32;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3685,402,0 chrXI 412238 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.66;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3572,375,0 chrXI 412494 . C A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.6268;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=22.49;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3418,357,0 chrXI 412504 . A G 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=147;Dels=0.00;FS=9.766;HaplotypeScore=7.5427;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.459;QD=20.61;ReadPosRankSum=2.911;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3062,333,0 chrXI 412588 . C G 2988 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=20.33;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3021,345,0 chrXI 412602 . C T 3319.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=21.14;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3319,345,0 chrXI 412724 . G A 3930.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.67;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3930,409,0 chrXI 412789 . T C 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=161;Dels=0.00;FS=5.956;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.469;QD=22.53;ReadPosRankSum=2.931;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3628,393,0 chrXI 413234 . A T 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.652;QD=23.35;ReadPosRankSum=1.572;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3069,321,0 chrXI 413439 . G T 3154 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=14.4493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3187,339,0 chrXI 413669 . G A 3748.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3748,385,0 chrXI 413963 . A G 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=140;Dels=0.00;FS=5.755;HaplotypeScore=11.0661;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.816;QD=22.35;ReadPosRankSum=2.949;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:3,135:140:99:3162,345,0 chrXI 414169 . A G 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=3.606;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.489;QD=21.38;ReadPosRankSum=1.688;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3335,378,0 chrXI 414179 . T C 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-1.609;QD=19.77;ReadPosRankSum=1.683;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2840,318,0 chrXI 414232 . G C 2343 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.1805;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=18.74;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2376,261,0 chrXI 414336 . C T 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=164;Dels=0.00;FS=5.563;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.064;QD=22.93;ReadPosRankSum=0.470;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3761,417,0 chrXI 414688 . T C 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.263;QD=24.70;ReadPosRankSum=1.704;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3121,342,0 chrXI 415240 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.4624;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.56;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3393,369,0 chrXI 415294 . G A 3034 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.99;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3067,330,0 chrXI 415378 . A C 2620 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.59;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2653,297,0 chrXI 415407 . C T 3024 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.44;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3057,315,0 chrXI 415441 . T C 2610 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.05;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2643,288,0 chrXI 415456 . A G 2267 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.21;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2300,252,0 chrXI 415517 . G A 2089 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=18.49;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2122,225,0 chrXI 415531 . T C 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=-0.419;QD=17.86;ReadPosRankSum=1.704;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2248,246,0 chrXI 415542 . A G 2409 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=4.6714;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=19.75;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2442,261,0 chrXI 415669 . T G 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.428;DP=122;Dels=0.00;FS=115.936;HaplotypeScore=9.0003;MLEAC=1;MLEAF=0.500;MQ=57.54;MQ0=0;MQRankSum=1.423;QD=0.63;ReadPosRankSum=-2.716;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,43:122:99:107,0,1353 chrXI 415738 . C T 3769.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.27;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3769,399,0 chrXI 415800 . T C 4055.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.71;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4055,453,0 chrXI 415864 . C G 2937 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.13;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2970,321,0 chrXI 415894 . A G 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.430;QD=21.54;ReadPosRankSum=1.705;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2747,291,0 chrXI 416349 . A T 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=3.718;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.138;QD=22.25;ReadPosRankSum=1.701;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2547,267,0 chrXI 416398 . A G 2651 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5404;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.38;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2684,306,0 chrXI 416471 . T A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.69;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3309,348,0 chrXI 416779 . G T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.0172;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.06;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3529,372,0 chrXI 417049 . G A 3201 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.70;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3234,339,0 chrXI 417173 . C T 1783 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.01;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1816,189,0 chrXI 417398 . T C 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-0.100;QD=23.59;ReadPosRankSum=1.666;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2486,270,0 chrXI 417408 . G A 2462 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=23.90;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2495,261,0 chrXI 417416 . G A 2297 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.67;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2330,255,0 chrXI 417757 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,147:152:99:3453,375,0 chrXI 418958 . C G 2146 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.83;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2179,237,0 chrXI 419090 . A G 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=116;Dels=0.00;FS=3.089;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.114;QD=21.04;ReadPosRankSum=1.701;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,111:116:99:2474,282,0 chrXI 419192 . A G 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=100;Dels=0.00;FS=3.053;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.810;QD=22.90;ReadPosRankSum=2.376;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2323,249,0 chrXI 419400 . G A 2561 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.89;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2594,267,0 chrXI 419413 . A G 2483 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.35;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2516,270,0 chrXI 420060 . G A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.32;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3545,381,0 chrXI 420104 . T C 2382 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.89;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2415,270,0 chrXI 420245 . C A 3097 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.6907;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.94;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3130,336,0 chrXI 420643 . T G 2714 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2747,309,0 chrXI 421142 . C T 4076.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.2263;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.70;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4076,438,0 chrXI 421231 . T C 2778 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.28;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2811,312,0 chrXI 421239 . G T 2619 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=19.69;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2652,294,0 chrXI 421550 . T C 2183 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2216,240,0 chrXI 421696 . T C 3198 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.21;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3231,348,0 chrXI 421905 . T A 4197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.1153;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.135;QD=23.32;ReadPosRankSum=1.674;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4197,450,0 chrXI 422051 . G T 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.7989;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.498;QD=26.01;ReadPosRankSum=0.909;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:4162,436,0 chrXI 422154 . A C 4533.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.79;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4533,486,0 chrXI 422960 . A G 2118 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.4836;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2151,246,0 chrXI 423496 . A T 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.974;QD=22.86;ReadPosRankSum=1.707;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3165,342,0 chrXI 423922 . C G 3424.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.14;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3424,372,0 chrXI 423977 . A G 3596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=162;Dels=0.00;FS=4.455;HaplotypeScore=10.1885;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.253;QD=22.20;ReadPosRankSum=1.710;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3596,399,0 chrXI 424151 . G A 4704.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.5820;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.37;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4704,487,0 chrXI 424217 . T C 4156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=176;Dels=0.00;FS=3.085;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.168;QD=23.61;ReadPosRankSum=1.712;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4156,444,0 chrXI 424283 . T C 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=3.059;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.693;QD=21.97;ReadPosRankSum=1.674;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3933,438,0 chrXI 424564 . C T 3919.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.19;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3919,403,0 chrXI 424739 . G T 3452.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.8446;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=23.81;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3452,363,0 chrXI 424829 . C T 2690 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2723,285,0 chrXI 424954 . C T 2987 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.74;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3020,321,0 chrXI 424958 . G A 3000 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.83;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3033,318,0 chrXI 425450 . G A 4361.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.4995;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.07;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4361,454,0 chrXI 425593 . T C 5957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.303;DP=277;Dels=0.00;FS=8.440;HaplotypeScore=19.9159;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.615;QD=21.51;ReadPosRankSum=3.316;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:4,272:277:99:5957,666,0 chrXI 425985 . T C 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=3.718;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.966;QD=24.47;ReadPosRankSum=1.701;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2798,303,0 chrXI 426033 . A C 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=130;Dels=0.00;FS=6.468;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.577;QD=23.88;ReadPosRankSum=2.374;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3138,336,0 chrXI 426199 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.22;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3279,348,0 chrXI 427151 . A G 1976 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.48;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2009,219,0 chrXI 427291 . T C 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=134;Dels=0.00;FS=2.584;HaplotypeScore=6.2602;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.887;QD=20.12;ReadPosRankSum=2.857;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:2729,297,0 chrXI 427367 . A G 3666.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.08;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3666,423,0 chrXI 427643 . A T 3913.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.25;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3913,414,0 chrXI 428291 . G C 3859.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.8501;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.44;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3859,435,0 chrXI 428519 . G A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.04;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3258,348,0 chrXI 428869 . T G 1170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.542;QD=24.37;ReadPosRankSum=2.348;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:2,46:48:99:1203,129,0 chrXI 429856 . C T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.4152;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.22;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3342,345,0 chrXI 429958 . C T 3741.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3741,399,0 chrXI 430549 . C G 3019 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=145.4209;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=18.52;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,158:163:99:3052,333,0 chrXI 430572 . T G 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=7.302;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-0.680;QD=20.69;ReadPosRankSum=2.351;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3137,333,0 chrXI 430641 . T C 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=182;Dels=0.00;FS=12.756;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.696;QD=20.46;ReadPosRankSum=2.962;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:3723,420,0 chrXI 430806 . A T 4630.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=26.76;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4630,490,0 chrXI 430831 . T C 3391.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=23.55;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3391,375,0 chrXI 430859 . T C 2766 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.67;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2799,303,0 chrXI 430903 . G T 2996 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.55;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3029,330,0 chrXI 430973 . A G 4445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.560;QD=21.90;ReadPosRankSum=1.715;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4445,498,0 chrXI 431261 . C A 2202 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=94.2178;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=20.58;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2235,249,0 chrXI 431262 . T C 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=3.584;HaplotypeScore=95.0065;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;MQRankSum=1.633;QD=20.90;ReadPosRankSum=1.699;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2227,252,0 chrXI 431353 . T A 1130 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;QD=15.92;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1163,120,0 chrXI 431381 . A G 1690 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=20.61;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1723,183,0 chrXI 431451 . A G 2216 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=22.61;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2249,252,0 chrXI 431473 . A G 1997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=3.102;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.371;QD=20.80;ReadPosRankSum=1.660;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2030,228,0 chrXI 431506 . T A 1674 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;QD=18.00;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1707,186,0 chrXI 431520 . G A 1665 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.03;FS=0.000;HaplotypeScore=15.4641;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=15.42;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1698,186,0 chrXI 431543 . G A 1590 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.03;FS=0.000;HaplotypeScore=19.1523;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=13.71;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1623,183,0 chrXI 431610 . A G 2396 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=14.01;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2429,276,0 chrXI 431617 . G C 2355 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=14.10;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:2388,264,0 chrXI 431700 . C T 2383 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.86;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2416,255,0 chrXI 432094 . A T 4689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.729;QD=24.68;ReadPosRankSum=1.677;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4689,490,0 chrXI 432256 . C T 1171 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1204,123,0 chrXI 432569 . C G 1636 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=3;QD=25.56;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1669,174,0 chrXI 432748 . A G 2519 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.3481;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=22.10;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2552,285,0 chrXI 432897 . T G 1159 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.33;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1192,138,0 chrXI 433630 . T C 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.022;QD=22.75;ReadPosRankSum=1.710;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3618,390,0 chrXI 433721 . A G 4131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=3.197;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-1.513;QD=21.63;ReadPosRankSum=1.677;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4131,447,0 chrXI 433722 . T A 4255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=191;Dels=0.00;FS=3.019;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.675;QD=22.28;ReadPosRankSum=2.398;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4255,448,0 chrXI 433806 . T C 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=139;Dels=0.00;FS=3.637;HaplotypeScore=21.3081;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.233;QD=19.78;ReadPosRankSum=1.655;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,135:139:99:2782,303,0 chrXI 434001 . C T 4381.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.1219;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.34;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4381,460,0 chrXI 434444 . G T 5624.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=16.3322;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.86;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5624,598,0 chrXI 434756 . A G 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-1.679;QD=19.05;ReadPosRankSum=2.369;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2948,321,0 chrXI 434977 . A G 1968 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.72;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2001,216,0 chrXI 434978 . C T 2049 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.57;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2082,213,0 chrXI 435084 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3414,366,0 chrXI 435445 . C A 2965 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.18;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:2998,327,0 chrXI 435648 . A G 3872.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.8707;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.31;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3872,417,0 chrXI 438455 . C G 2678 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.42;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2711,297,0 chrXI 438514 . T C 2374 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2407,255,0 chrXI 440451 . A C 3872.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.82;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3872,435,0 chrXI 442006 . T C 4675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.1655;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.044;QD=23.49;ReadPosRankSum=1.715;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4675,504,0 chrXI 443215 . C G 3022 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.4004;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.77;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3055,327,0 chrXI 443630 . T C 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.336;QD=22.45;ReadPosRankSum=1.680;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3041,345,0 chrXI 444420 . G A 3618.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3618,379,0 chrXI 445342 . T C 4144.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.81;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4144,465,0 chrXI 446566 . G A 2223 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.68;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2256,243,0 chrXI 446892 . A G 2105 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.06;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2138,231,0 chrXI 447048 . A G 3320.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.7481;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.23;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3320,360,0 chrXI 447357 . C T 3398.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.17;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3398,349,0 chrXI 447456 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.012;QD=23.42;ReadPosRankSum=1.683;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3302,354,0 chrXI 447546 . T C 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=2.799;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-0.028;QD=24.69;ReadPosRankSum=2.395;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3309,354,0 chrXI 451060 . T C 5928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=251;Dels=0.00;FS=2.594;HaplotypeScore=14.1470;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.110;QD=23.62;ReadPosRankSum=2.391;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:2,249:251:99:5928,637,0 chrXI 453639 . A G 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=4.479;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.220;QD=24.77;ReadPosRankSum=1.702;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2881,309,0 chrXI 454594 . T C 5140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.171;QD=24.36;ReadPosRankSum=1.716;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:5140,558,0 chrXI 455731 . T C 4634.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4634,501,0 chrXI 456074 . A G 3730.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.96;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3730,411,0 chrXI 457446 . C T 3552.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.9369;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3552,381,0 chrXI 458675 . T A 1154 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=0;QD=19.56;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1187,129,0 chrXI 458734 . A G 1616 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=22.76;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1649,183,0 chrXI 458781 . C T 1898 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=24.65;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1931,210,0 chrXI 459646 . A G 4120.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.7768;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4120,447,0 chrXI 460484 . G C 3401.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3401,390,0 chrXI 461216 . C T 3625.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.54;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3625,381,0 chrXI 463701 . A G 5123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.3854;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.140;QD=21.80;ReadPosRankSum=1.688;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5123,579,0 chrXI 466708 . C T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.35;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3798,396,0 chrXI 467127 . T C 2090 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.90;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2123,225,0 chrXI 467162 . A G 2197 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.0553;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.33;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2230,246,0 chrXI 467237 . G A 1942 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=19.82;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1975,216,0 chrXI 467243 . T C 1789 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=20.10;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1822,198,0 chrXI 467309 . A G 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=4.591;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-0.323;QD=23.32;ReadPosRankSum=1.703;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2785,306,0 chrXI 467328 . T C 3094 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.44;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3127,348,0 chrXI 467504 . G A 4871.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=23.42;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4871,543,0 chrXI 467546 . A G 4249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=3.924;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=-0.560;QD=21.79;ReadPosRankSum=1.661;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4249,480,0 chrXI 467564 . T G 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.949;QD=21.51;ReadPosRankSum=1.713;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3808,420,0 chrXI 467627 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=17.83;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3530,378,0 chrXI 467651 . T C 4566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=241;Dels=0.00;FS=3.271;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=0.505;QD=18.95;ReadPosRankSum=1.703;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:1,239:241:99:4566,495,0 chrXI 467666 . A G 5031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=273;Dels=0.00;FS=2.987;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-0.429;QD=18.43;ReadPosRankSum=2.431;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:2,270:273:99:5031,570,0 chrXI 467744 . A G 4909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=18.3106;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-1.417;QD=22.31;ReadPosRankSum=1.669;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4909,528,0 chrXI 467777 . T C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=151;Dels=0.00;FS=3.808;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.500;QD=20.36;ReadPosRankSum=1.662;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3107,354,0 chrXI 467786 . T A 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.974;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.9844;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-1.467;QD=21.99;ReadPosRankSum=0.753;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3408,360,0 chrXI 468208 . T C 3425.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.30;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3425,384,0 chrXI 468315 . A T 2563 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2596,276,0 chrXI 468581 . T C 1544 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.71;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1577,168,0 chrXI 468702 . C T 1015 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=19.52;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1048,111,0 chrXI 468708 . G A 1022 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=19.28;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1055,114,0 chrXI 468710 . G T 991 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=18.70;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1024,114,0 chrXI 469130 . C T 5118.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.9447;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5118,541,0 chrXI 469423 . C T 3171 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.02;FS=0.000;HaplotypeScore=39.9473;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;QD=25.17;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3204,336,0 chrXI 469719 . G C 4540.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4540,498,0 chrXI 469831 . C T 4709.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.2320;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4709,490,0 chrXI 470292 . G A 3086 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3119,330,0 chrXI 470607 . C T 2982 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:3015,318,0 chrXI 470988 . C T 3658.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.9104;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.07;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3658,387,0 chrXI 471365 . T G 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=5.924;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=-0.195;QD=20.56;ReadPosRankSum=1.706;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2767,297,0 chrXI 471378 . A C 2530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=5.685;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=0.443;QD=18.47;ReadPosRankSum=1.606;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2563,294,0 chrXI 471379 . C A 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=-0.695;QD=19.27;ReadPosRankSum=1.707;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2711,274,0 chrXI 471993 . G A 3277.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3277,339,0 chrXI 472945 . C T 4786.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.0639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4786,513,0 chrXI 473351 . G A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.46;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3327,354,0 chrXI 473414 . G A 2010 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=18.96;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2043,222,0 chrXI 473416 . C T 2022 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=19.44;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2055,213,0 chrXI 473427 . G A 2068 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=17.68;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2101,231,0 chrXI 473465 . A G 2181 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=18.80;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2214,240,0 chrXI 473531 . G T 2043 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2076,213,0 chrXI 473650 . G A 3177 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.02;FS=0.000;HaplotypeScore=10.4764;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=24.82;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3210,336,0 chrXI 473718 . C T 3658.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.3888;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=26.13;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3658,379,0 chrXI 474169 . C A 3369.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.59;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3369,349,0 chrXI 474932 . A G 4455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=187;Dels=0.00;FS=6.006;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.231;QD=23.82;ReadPosRankSum=2.963;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:4455,477,0 chrXI 475092 . G A 4007.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.30;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4007,435,0 chrXI 475195 . C T 3015 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.79;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3048,330,0 chrXI 476391 . T C 4216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=192;Dels=0.00;FS=7.528;HaplotypeScore=13.9983;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.349;QD=21.96;ReadPosRankSum=2.322;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4216,453,0 chrXI 476611 . T A 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.444;DP=176;Dels=0.00;FS=11.184;HaplotypeScore=16.7324;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.040;QD=22.52;ReadPosRankSum=3.757;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:5,170:176:99:3964,420,0 chrXI 476876 . A T 6757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=280;Dels=0.00;FS=3.573;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.037;QD=24.13;ReadPosRankSum=1.695;SB=-3.379e+03 GT:AD:DP:GQ:PL 1/1:1,279:280:99:6757,706,0 chrXI 477046 . G A 7850.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=17.7874;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.79;SB=-4.308e+03 GT:AD:DP:GQ:PL 1/1:0,330:330:99:7850,820,0 chrXI 477203 . T C 5169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=241;Dels=0.00;FS=6.074;HaplotypeScore=9.9669;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.013;QD=21.45;ReadPosRankSum=2.878;SB=-2.996e+03 GT:AD:DP:GQ:PL 1/1:3,237:241:99:5169,585,0 chrXI 477574 . C T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3665,393,0 chrXI 478093 . A G 6560.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=19.6583;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.03;SB=-3.279e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:6560,709,0 chrXI 478643 . G A 4601.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0201;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4601,472,0 chrXI 479163 . C G 5165.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.6540;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.60;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,205:210:99:5165,555,0 chrXI 479195 . T C 4581.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.37;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4581,513,0 chrXI 479521 . A G 2703 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.1771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2736,294,0 chrXI 480055 . G A 3636.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.16;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3636,390,0 chrXI 480386 . A G 3851.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.92;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3851,426,0 chrXI 480455 . A C 3327.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3327,378,0 chrXI 481321 . A T 4518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=185;Dels=0.00;FS=4.159;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.552;QD=24.42;ReadPosRankSum=1.713;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4518,472,0 chrXI 481795 . A G 4242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=3.924;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=1.323;QD=21.75;ReadPosRankSum=1.661;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4242,477,0 chrXI 481810 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.55;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3772,408,0 chrXI 482419 . C G 3904.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.31;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3904,426,0 chrXI 482428 . T C 3870.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.37;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3870,423,0 chrXI 483350 . A G 3955.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.03;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3955,426,0 chrXI 483858 . G A 4214.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4214,445,0 chrXI 484887 . C T 2346 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.52;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2379,258,0 chrXI 486704 . A G 5820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=254;Dels=0.00;FS=2.689;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.024;QD=22.91;ReadPosRankSum=2.421;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:2,252:254:99:5820,648,0 chrXI 487238 . G T 4379.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.29;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4379,460,0 chrXI 487439 . A G 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.6774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.312;QD=21.90;ReadPosRankSum=2.408;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3898,432,0 chrXI 487626 . C T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=24.11;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3809,394,0 chrXI 487631 . G A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.52;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3507,366,0 chrXI 488186 . A G 5790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=16.6051;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.545;QD=23.35;ReadPosRankSum=1.704;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:5790,628,0 chrXI 490777 . A T 2544 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.13;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2577,282,0 chrXI 490945 . T A 1056 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=19.92;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1089,114,0 chrXI 490946 . T C 1007 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=19.00;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1040,114,0 chrXI 492091 . G C 3311.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3311,360,0 chrXI 494622 . T A 4503.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4503,469,0 chrXI 495268 . C T 4180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.866;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.8777;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.693;QD=22.84;ReadPosRankSum=-0.847;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:1,179:183:99:4180,413,0 chrXI 495987 . A G 4051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=3.116;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.856;QD=24.26;ReadPosRankSum=1.711;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:4051,438,0 chrXI 499999 . A G 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.5332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.775;QD=23.58;ReadPosRankSum=1.947;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4150,447,0 chrXI 500101 . A G 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.966;QD=23.81;ReadPosRankSum=1.699;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,103:106:99:2557,279,0 chrXI 500136 . C A 2812 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2845,306,0 chrXI 500262 . C A 3070 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.7287;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.16;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3103,327,0 chrXI 500383 . T C 2837 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.33;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2870,312,0 chrXI 500926 . G A 2396 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2429,258,0 chrXI 501115 . C T 1026 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.39;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1059,114,0 chrXI 501178 . T C 460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.362;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.486;QD=16.43;ReadPosRankSum=1.609;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:54:493,54,0 chrXI 501241 . A G 1295 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.58;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1328,138,0 chrXI 501250 . T A 1356 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.4696;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.55;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1389,147,0 chrXI 501319 . T C 1330 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.11;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1363,150,0 chrXI 501392 . A G 1655 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.70;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1688,180,0 chrXI 501710 . A G 3202 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=12.9590;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.54;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3235,354,0 chrXI 501881 . A G 4710.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.1437;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.15;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4710,513,0 chrXI 501944 . T C 3812.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.69;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3812,408,0 chrXI 501970 . A G 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=3.172;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.739;QD=21.89;ReadPosRankSum=1.711;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3590,384,0 chrXI 502040 . T C 4103.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.04;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4103,456,0 chrXI 502357 . T C 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.971;QD=23.02;ReadPosRankSum=1.692;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4006,432,0 chrXI 502603 . A G 4033.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.3311;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.79;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4033,432,0 chrXI 502693 . C T 4051.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.5920;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.10;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4051,447,0 chrXI 502906 . A G 3970.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.2915;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.63;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3970,420,0 chrXI 503144 . A T 3816.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.19;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3816,411,0 chrXI 503165 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.5032;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.57;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3261,357,0 chrXI 503229 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.69;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3137,336,0 chrXI 503618 . C T 2906 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2939,315,0 chrXI 503732 . G A 3901.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.8890;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.38;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,156:160:99:3901,406,0 chrXI 504179 . A G 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=131;Dels=0.00;FS=3.037;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.084;QD=22.91;ReadPosRankSum=2.375;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3034,327,0 chrXI 504362 . T C 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.630;QD=20.38;ReadPosRankSum=1.669;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,109:113:99:2336,258,0 chrXI 504574 . T C 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.967;QD=22.59;ReadPosRankSum=1.710;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3479,387,0 chrXI 504612 . T C 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=159;Dels=0.00;FS=3.013;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=0.023;QD=22.28;ReadPosRankSum=2.356;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3542,381,0 chrXI 504632 . G T 3565.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.15;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3565,375,0 chrXI 504700 . T G 4537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.5654;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.844;QD=23.03;ReadPosRankSum=1.714;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4537,510,0 chrXI 504944 . G A 4230.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.0135;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.24;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4230,442,0 chrXI 505177 . T C 3441.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.89;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3441,387,0 chrXI 505462 . A G 2700 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=20.93;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2733,291,0 chrXI 505493 . C T 2270 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=17.46;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2303,249,0 chrXI 505505 . A G 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=131;Dels=0.00;FS=4.327;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.19;MQ0=0;MQRankSum=-1.039;QD=13.85;ReadPosRankSum=1.705;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:1847,198,0 chrXI 505511 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=0;QD=13.71;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:1938,210,0 chrXI 505526 . G T 2057 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=43.20;MQ0=0;QD=13.90;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2090,219,0 chrXI 505559 . C T 2609 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=15.81;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2642,276,0 chrXI 505564 . C T 2476 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=14.65;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2509,270,0 chrXI 505640 . G A 4415.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.6198;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.12;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4415,460,0 chrXI 505715 . C T 4645.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.6509;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=22.44;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4645,490,0 chrXI 505777 . G A 3501.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=20.96;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3501,366,0 chrXI 505817 . C T 3929.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.45;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3929,409,0 chrXI 506135 . C T 4323.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.6540;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.37;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4323,462,0 chrXI 506614 . A G 4366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=207;Dels=0.00;FS=2.571;HaplotypeScore=6.2959;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-0.029;QD=21.09;ReadPosRankSum=2.898;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:4366,492,0 chrXI 506621 . A T 4886.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=24.43;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4886,499,0 chrXI 506874 . T A 515 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=16.61;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:57:548,57,0 chrXI 507227 . T G 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=3.255;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.380;QD=21.92;ReadPosRankSum=1.708;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3255,357,0 chrXI 507254 . G A 3171 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.5989;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.28;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3204,345,0 chrXI 507344 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=137;Dels=0.00;FS=4.676;HaplotypeScore=11.0639;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.116;QD=23.60;ReadPosRankSum=1.681;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3266,378,0 chrXI 507512 . C T 3437.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=22.17;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3437,366,0 chrXI 507521 . A G 3282.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.74;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3282,363,0 chrXI 507844 . A G 3719.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.56;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3719,393,0 chrXI 507899 . C G 2435 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.76;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2468,264,0 chrXI 507925 . C T 2711 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.97;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2744,288,0 chrXI 507968 . A G 3125 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.0634;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.11;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3158,345,0 chrXI 508472 . G A 5114.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.9771;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.04;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5114,535,0 chrXI 508533 . C T 3724.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.85;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3724,388,0 chrXI 508894 . T C 4811.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4811,525,0 chrXI 508942 . C T 6934.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.43;SB=-3.642e+03 GT:AD:DP:GQ:PL 1/1:0,295:296:99:6934,762,0 chrXI 509106 . T G 4814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=219;Dels=0.00;FS=3.452;HaplotypeScore=20.0076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.615;QD=21.98;ReadPosRankSum=1.652;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:1,216:219:99:4814,519,0 chrXI 509190 . C T 5256.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=15.4717;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.08;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5256,579,0 chrXI 509442 . T G 4811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=19.9923;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.460;QD=23.35;ReadPosRankSum=1.664;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4811,528,0 chrXI 509718 . T A 5100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=216;Dels=0.00;FS=3.660;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.577;QD=23.61;ReadPosRankSum=1.636;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:5100,523,0 chrXI 509797 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.4137;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=0.079;QD=17.81;ReadPosRankSum=1.714;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3509,381,0 chrXI 509825 . C T 4222.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.65;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4222,450,0 chrXI 509930 . T C 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.508;QD=20.46;ReadPosRankSum=1.676;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:3806,414,0 chrXI 509944 . A G 3986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.594;DP=196;Dels=0.00;FS=15.506;HaplotypeScore=9.8833;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=-0.096;QD=20.34;ReadPosRankSum=3.458;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:5,191:196:99:3986,441,0 chrXI 510028 . T C 4265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=194;Dels=0.00;FS=6.089;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.359;QD=21.98;ReadPosRankSum=2.964;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:3,190:194:99:4265,456,0 chrXI 510202 . C T 4189.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.93;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4189,450,0 chrXI 510755 . A T 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=139;Dels=0.00;FS=7.194;HaplotypeScore=16.3160;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;MQRankSum=-1.601;QD=22.75;ReadPosRankSum=2.397;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3195,339,0 chrXI 510872 . G T 3807.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=25.55;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3807,402,0 chrXI 510905 . C T 4508.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.4938;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.04;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4508,472,0 chrXI 511075 . A G 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=198;Dels=0.00;FS=3.033;HaplotypeScore=9.0311;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.812;QD=22.28;ReadPosRankSum=2.399;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:2,193:198:99:4412,471,0 chrXI 511087 . A G 4323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.103;DP=205;Dels=0.00;FS=3.032;HaplotypeScore=12.9202;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=2.087;QD=21.09;ReadPosRankSum=1.808;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:2,201:205:99:4323,466,0 chrXI 511186 . A G 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.951;QD=21.36;ReadPosRankSum=2.394;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3780,408,0 chrXI 511303 . T C 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=180;Dels=0.00;FS=3.234;HaplotypeScore=9.4017;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-0.397;QD=22.02;ReadPosRankSum=1.713;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3964,447,0 chrXI 511327 . A G 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=3.536;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.593;QD=23.60;ReadPosRankSum=1.709;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3517,381,0 chrXI 511387 . G A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.32;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3288,348,0 chrXI 511693 . T C 3976.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.4351;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.34;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3976,432,0 chrXI 511838 . A T 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.304;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=12.4227;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.253;QD=16.27;ReadPosRankSum=1.693;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1481,156,0 chrXI 511926 . T A 1331 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.48;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1364,141,0 chrXI 512200 . T C 5359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.2357;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.558;QD=24.47;ReadPosRankSum=1.669;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:5359,582,0 chrXI 512466 . C T 3413.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.60;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3413,355,0 chrXI 512653 . T C 4029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=19.4293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.058;QD=22.38;ReadPosRankSum=1.713;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4029,432,0 chrXI 512867 . C T 3719.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=17.1966;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.32;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,179:183:99:3719,411,0 chrXI 512972 . A G 5402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=232;Dels=0.00;FS=10.524;HaplotypeScore=16.0748;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.957;QD=23.28;ReadPosRankSum=2.952;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:3,229:232:99:5402,588,0 chrXI 513097 . A G 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=148;Dels=0.00;FS=2.741;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.226;QD=20.41;ReadPosRankSum=2.383;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3053,342,0 chrXI 513284 . T C 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=4.634;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.596;QD=22.67;ReadPosRankSum=1.704;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2867,312,0 chrXI 513425 . C G 1934 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.98;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1967,216,0 chrXI 513438 . A T 1813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.612;DP=91;Dels=0.00;FS=5.374;HaplotypeScore=1.9598;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-1.812;QD=19.92;ReadPosRankSum=2.678;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:3,88:91:99:1846,192,0 chrXI 513454 . G C 1691 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.22;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1724,186,0 chrXI 513539 . T C 1706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=3.067;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-0.472;QD=22.16;ReadPosRankSum=1.687;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1739,198,0 chrXI 513674 . C T 1525 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=64.8485;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.81;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1558,162,0 chrXI 513762 . C T 2760 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.08;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2793,291,0 chrXI 514110 . C A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.2780;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.00;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3674,387,0 chrXI 514126 . T G 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6130;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.157;QD=22.62;ReadPosRankSum=1.711;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3733,405,0 chrXI 514669 . A G 4486.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.7004;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=21.88;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4486,501,0 chrXI 514792 . C T 5551.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=23.42;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5551,592,0 chrXI 514873 . G A 3383.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.55;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3383,363,0 chrXI 515018 . C T 4361.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.65;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4361,448,0 chrXI 515098 . A G 2478 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.18;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2511,291,0 chrXI 515387 . C T 4540.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=25.22;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4540,475,0 chrXI 515435 . C A 3875.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=23.63;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3875,408,0 chrXI 515606 . G A 3652.01 SnpCluster AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=18.73;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3652,390,0 chrXI 515607 . T C 3383.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=3.102;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-0.469;QD=17.44;ReadPosRankSum=1.714;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:3383,384,0 chrXI 515611 . A G 3437.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=205;Dels=0.00;FS=9.225;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;MQRankSum=0.315;QD=16.77;ReadPosRankSum=2.916;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:3,201:205:99:3437,378,0 chrXI 515680 . G A 3578.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=19.34;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3578,373,0 chrXI 515689 . G A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=19.73;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3749,399,0 chrXI 515713 . C T 3908.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.2353;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.79;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3908,429,0 chrXI 515783 . G A 5475.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=15.8867;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.23;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5475,600,0 chrXI 516142 . A G 6823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=317;Dels=0.00;FS=13.770;HaplotypeScore=18.8624;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.879;QD=21.52;ReadPosRankSum=2.977;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:3,303:317:99:6823,783,0 chrXI 516249 . C G 6114.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=15.9570;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.43;SB=-3.237e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:6114,661,0 chrXI 516535 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.48;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3150,330,0 chrXI 516541 . T C 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=3.578;HaplotypeScore=3.1894;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=0.749;QD=18.70;ReadPosRankSum=1.665;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2931,324,0 chrXI 516614 . G C 3918.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.2723;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.05;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3918,420,0 chrXI 517129 . T A 1754 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=24.70;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1787,189,0 chrXI 517143 . T C 1641 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.11;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1674,180,0 chrXI 517179 . T C 1326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=0.577;QD=20.09;ReadPosRankSum=1.680;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1359,147,0 chrXI 517238 . C T 1628 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;QD=24.30;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1661,171,0 chrXI 517259 . G A 1705 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=21.31;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1738,192,0 chrXI 517456 . G T 38.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=38.23;MQ0=0;MQRankSum=0.742;QD=5.44;ReadPosRankSum=-0.742;SB=0.151 GT:AD:DP:GQ:PL 0/1:1,6:7:16:68,0,16 chrXI 517860 . T G 2747 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;QD=20.20;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2780,300,0 chrXI 517936 . T C 2802 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;QD=22.97;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2835,300,0 chrXI 518139 . T C 532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.741;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-0.072;QD=4.51;ReadPosRankSum=2.445;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:9,109:118:55:565,55,0 chrXI 518221 . C T 7565.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.64;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,284:284:99:7565,802,0 chrXI 518577 . G A 7213.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=15.4408;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.99;SB=-4.356e+03 GT:AD:DP:GQ:PL 1/1:0,327:328:99:7213,757,0 chrXI 518593 . G A 6046.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=10.0443;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.44;SB=-3.558e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:6046,634,0 chrXI 518633 . T A 6967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=20.4172;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.392;QD=21.84;ReadPosRankSum=1.667;SB=-3.286e+03 GT:AD:DP:GQ:PL 1/1:1,317:319:99:6967,748,0 chrXI 519321 . A C 1727 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.06;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1760,192,0 chrXI 519488 . A G 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=142;Dels=0.00;FS=8.288;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-0.874;QD=18.73;ReadPosRankSum=2.415;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2692,306,0 chrXI 519490 . A G 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=139;Dels=0.00;FS=4.075;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=0.703;QD=19.38;ReadPosRankSum=1.682;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2727,288,0 chrXI 519553 . A G 4541.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=22.04;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4541,498,0 chrXI 519665 . G A 5258.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.09;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,233:238:99:5258,565,0 chrXI 519687 . C A 5098.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=18.5148;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=20.07;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,250:254:99:5098,532,0 chrXI 519796 . T C 2408 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.053;DP=410;Dels=0.00;FS=35.049;HaplotypeScore=352.8566;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;MQRankSum=1.697;QD=5.87;ReadPosRankSum=4.248;SB=-4.516e+03 GT:AD:DP:GQ:PL 1/1:10,399:409:99:2441,270,0 chrXI 519910 . G A 9146.01 filter AC=2;AF=1.00;AN=2;DP=400;Dels=0.00;FS=0.000;HaplotypeScore=22.2116;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.87;SB=-4.388e+03 GT:AD:DP:GQ:PL 1/1:0,400:400:99:9146,1000,0 chrXI 520210 . T C 8683.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=400;Dels=0.00;FS=10.411;HaplotypeScore=19.6221;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.214;QD=21.71;ReadPosRankSum=2.902;SB=-4.671e+03 GT:AD:DP:GQ:PL 1/1:3,396:400:99:8683,972,0 chrXI 520276 . G A 9227.01 filter AC=2;AF=1.00;AN=2;DP=418;Dels=0.00;FS=0.000;HaplotypeScore=23.6353;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=22.07;SB=-4.387e+03 GT:AD:DP:GQ:PL 1/1:0,417:418:99:9227,970,0 chrXI 520399 . C T 8086.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=20.3122;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.91;SB=-4.569e+03 GT:AD:DP:GQ:PL 1/1:0,351:353:99:8086,835,0 chrXI 520634 . C T 2625 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.8245;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.49;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,139:142:99:2658,273,0 chrXI 521062 . T C 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=154;Dels=0.00;FS=6.026;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.444;QD=23.87;ReadPosRankSum=2.902;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3676,393,0 chrXI 521128 . C T 7071.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=23.9751;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.34;SB=-3.767e+03 GT:AD:DP:GQ:PL 1/1:0,303:303:99:7071,742,0 chrXI 521261 . G A 8081.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=14.8501;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.33;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,317:319:99:8081,838,0 chrXI 521362 . T C 7247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=355;Dels=0.00;FS=9.142;HaplotypeScore=19.6847;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.088;QD=20.41;ReadPosRankSum=2.963;SB=-4.535e+03 GT:AD:DP:GQ:PL 1/1:3,351:355:99:7247,787,0 chrXI 521680 . G T 4911.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.35;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:4911,540,0 chrXI 521710 . C A 4566.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=18.7044;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.85;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4566,486,0 chrXI 521756 . T C 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=168;Dels=0.00;FS=10.895;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.508;QD=20.30;ReadPosRankSum=2.420;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3411,369,0 chrXI 521933 . T C 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.458;QD=24.56;ReadPosRankSum=2.385;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3782,408,0 chrXI 522077 . A G 6023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=261;Dels=0.00;FS=4.495;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.114;QD=23.08;ReadPosRankSum=1.705;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:1,258:261:99:6023,660,0 chrXI 522153 . G A 7083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.334;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=13.6844;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.539;QD=24.68;ReadPosRankSum=-1.406;SB=-3.520e+03 GT:AD:DP:GQ:PL 1/1:1,286:287:99:7083,712,0 chrXI 522294 . G A 6340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.237;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=9.7482;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.050;QD=22.81;ReadPosRankSum=-0.872;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:1,277:278:99:6340,693,0 chrXI 522560 . C G 4645.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.4140;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.58;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4645,501,0 chrXI 522668 . A C 3970.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3970,432,0 chrXI 522994 . C A 4975.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=21.44;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:4975,517,0 chrXI 522995 . G A 4953.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=21.53;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4953,517,0 chrXI 523041 . C T 5366.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=14.2518;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.33;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,262:264:99:5366,562,0 chrXI 523140 . T C 4788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=215;Dels=0.00;FS=4.853;HaplotypeScore=7.2314;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.696;QD=22.27;ReadPosRankSum=1.700;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4788,519,0 chrXI 523152 . A C 4634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.201;DP=217;Dels=0.00;FS=2.585;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.187;QD=21.35;ReadPosRankSum=2.427;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:4634,507,0 chrXI 523652 . T C 1428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.431;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=619.4943;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.909;QD=5.08;ReadPosRankSum=-9.954;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:212,68:281:99:1461,165,0 chrXI 523718 . G A 4269.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=17.8621;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=17.08;SB=-3.399e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:4269,448,0 chrXI 524191 . A G 960 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.3316;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=16.84;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,56:57:99:993,114,0 chrXI 524202 . G A 1025 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=11.9743;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=16.02;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1058,117,0 chrXI 524433 . C T 6647.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=25.08;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:6647,694,0 chrXI 524511 . C A 6507.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=21.0120;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.44;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:0,289:290:99:6507,717,0 chrXI 525301 . A G 60.42 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.073;DP=14;Dels=0.00;FS=18.921;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=37.84;MQ0=0;MQRankSum=-2.270;QD=4.32;ReadPosRankSum=1.283;SB=-3.425e+00 GT:AD:DP:GQ:PL 0/1:2,11:14:7:90,0,7 chrXI 525302 . C T 118.13 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=8.44;SB=-4.814e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:151,18,0 chrXI 525489 . T A 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.479;QD=25.02;ReadPosRankSum=1.676;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3111,330,0 chrXI 525645 . T C 6611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=291;Dels=0.00;FS=3.353;HaplotypeScore=14.5254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.717;QD=22.72;ReadPosRankSum=1.720;SB=-3.559e+03 GT:AD:DP:GQ:PL 1/1:1,289:291:99:6611,712,0 chrXI 525867 . G C 5254.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=18.3726;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.36;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:0,243:246:99:5254,573,0 chrXI 525905 . C T 5038.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.59;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5038,538,0 chrXI 526035 . C G 5478.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=17.5388;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.91;SB=-3.173e+03 GT:AD:DP:GQ:PL 1/1:0,246:250:99:5478,597,0 chrXI 526428 . C T 4650.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.53;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4650,493,0 chrXI 526706 . C T 3962.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3962,432,0 chrXI 527332 . A G 6428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=275;Dels=0.00;FS=3.622;HaplotypeScore=14.0760;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.037;QD=23.37;ReadPosRankSum=1.707;SB=-2.990e+03 GT:AD:DP:GQ:PL 1/1:1,273:275:99:6428,700,0 chrXI 527413 . T C 6245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=15.5527;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.314;QD=23.57;ReadPosRankSum=1.680;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:1,264:265:99:6245,673,0 chrXI 527498 . G C 6139.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=22.91;SB=-3.125e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:6139,675,0 chrXI 527511 . A G 5510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=7.5201;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.636;QD=21.44;ReadPosRankSum=1.705;SB=-3.415e+03 GT:AD:DP:GQ:PL 1/1:1,255:256:99:5510,592,0 chrXI 527638 . T C 5660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=266;Dels=0.00;FS=9.608;HaplotypeScore=14.3263;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.282;QD=21.28;ReadPosRankSum=2.403;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:2,263:266:99:5660,610,0 chrXI 527758 . G T 2689 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=16.40;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2722,297,0 chrXI 527782 . T A 2683 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.7605;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=16.56;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2716,285,0 chrXI 527820 . A G 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=175;Dels=0.00;FS=3.772;HaplotypeScore=9.1362;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=1.354;QD=18.05;ReadPosRankSum=1.712;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3191,366,0 chrXI 528000 . C T 9355.01 filter AC=2;AF=1.00;AN=2;DP=379;Dels=0.00;FS=0.000;HaplotypeScore=14.4449;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.68;SB=-2.743e+03 GT:AD:DP:GQ:PL 1/1:0,379:379:99:9355,1015,0 chrXI 528277 . A C 7003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.666;DP=313;Dels=0.00;FS=11.962;HaplotypeScore=30.5340;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.567;QD=22.37;ReadPosRankSum=3.828;SB=-3.725e+03 GT:AD:DP:GQ:PL 1/1:5,304:313:99:7003,798,0 chrXI 528761 . A G 3845.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.817;DP=181;Dels=0.00;FS=2.558;HaplotypeScore=8.0603;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.228;QD=21.24;ReadPosRankSum=2.895;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:3845,429,0 chrXI 528861 . G A 3729.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.74;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3729,396,0 chrXI 528889 . G C 4232.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.75;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4232,456,0 chrXI 528990 . A T 3850.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.05;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3850,402,0 chrXI 529173 . T C 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.264;DP=188;Dels=0.00;FS=12.469;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-0.079;QD=18.76;ReadPosRankSum=3.413;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:4,183:188:99:3527,399,0 chrXI 529197 . G A 4337.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.3671;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.11;SB=-2.850e+03 GT:AD:DP:GQ:PL 1/1:0,223:227:99:4337,477,0 chrXI 529358 . G A 4615.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.6757;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.51;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4615,487,0 chrXI 529548 . C G 4487.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.27;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4487,492,0 chrXI 529895 . G A 6783.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=12.9560;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.99;SB=-3.306e+03 GT:AD:DP:GQ:PL 1/1:0,294:295:99:6783,700,0 chrXI 529983 . T G 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=221;Dels=0.00;FS=8.852;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.087;QD=18.14;ReadPosRankSum=2.359;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:2,216:221:99:4009,459,0 chrXI 530005 . C G 4190.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=18.87;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4190,456,0 chrXI 530289 . T C 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=191;Dels=0.00;FS=6.959;HaplotypeScore=9.0811;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=1.035;QD=19.81;ReadPosRankSum=2.411;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3783,411,0 chrXI 530304 . C T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=19.25;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3599,393,0 chrXI 531524 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.30;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3200,336,0 chrXI 531530 . G T 3100 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.38;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3133,336,0 chrXI 531608 . C T 3505.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.37;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3505,378,0 chrXI 531623 . A T 3462.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.08;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3462,375,0 chrXI 531803 . T G 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=173;Dels=0.00;FS=6.950;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-0.618;QD=22.70;ReadPosRankSum=2.421;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3927,441,0 chrXI 531920 . C T 4521.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.84;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4521,486,0 chrXI 532119 . G A 3367.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.15;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3367,354,0 chrXI 532175 . T G 3173 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.60;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3206,351,0 chrXI 532258 . A G 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.739;QD=21.61;ReadPosRankSum=2.416;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3232,351,0 chrXI 532450 . C A 2941 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.35;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2974,309,0 chrXI 532495 . G A 3796.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.3596;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=24.81;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3796,394,0 chrXI 532520 . A G 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=141;Dels=0.00;FS=2.926;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.305;QD=21.23;ReadPosRankSum=2.188;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3026,330,0 chrXI 532548 . C A 136.13 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=1.01;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:18:169,18,0 chrXI 532628 . C T 4789.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=17.9149;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.47;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4789,505,0 chrXI 532742 . G A 4247.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.1708;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.59;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4247,468,0 chrXI 532847 . G T 4850.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=15.9716;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.45;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4850,513,0 chrXI 533126 . T C 4516.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.8707;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.64;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4516,480,0 chrXI 533229 . G C 5265.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,233:236:99:5265,562,0 chrXI 533494 . T C 3187 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.13;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3220,348,0 chrXI 533550 . G A 3679.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.28;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3679,387,0 chrXI 533572 . A G 3763.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.95;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3763,402,0 chrXI 533670 . T C 5589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.3808;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.229;QD=25.29;ReadPosRankSum=1.653;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,218:221:99:5589,603,0 chrXI 533844 . A T 4559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.311;QD=23.03;ReadPosRankSum=2.954;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:4559,492,0 chrXI 534309 . C T 6229.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=11.3589;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.42;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:6229,661,0 chrXI 535579 . G T 4791.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.1117;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=24.08;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4791,513,0 chrXI 537672 . G A 4162.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4162,441,0 chrXI 537837 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.3129;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.38;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3709,399,0 chrXI 537898 . G C 4351.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.8611;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.31;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4351,471,0 chrXI 537993 . C T 4246.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.6535;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.11;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4246,445,0 chrXI 538129 . C T 3889.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.5767;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.10;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3889,417,0 chrXI 538933 . G A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.8889;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.26;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4489,466,0 chrXI 539120 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=161;Dels=0.00;FS=3.009;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.313;QD=23.53;ReadPosRankSum=2.389;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3789,411,0 chrXI 539661 . G A 3634.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3634,390,0 chrXI 539877 . A G 4326.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4326,468,0 chrXI 540097 . C G 2861 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2894,324,0 chrXI 540251 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2667,279,0 chrXI 540879 . G A 2928 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.37;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2961,315,0 chrXI 540885 . T C 2909 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.20;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2942,315,0 chrXI 540904 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.80;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3132,330,0 chrXI 540946 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.96;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3306,345,0 chrXI 541137 . G A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4655;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.20;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3375,369,0 chrXI 541941 . G C 2702 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.9517;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2735,306,0 chrXI 542085 . C T 3204.99 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.39;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3238,345,0 chrXI 542349 . A G 2281 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.83;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2314,264,0 chrXI 542352 . C T 2487 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.4223;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.22;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2520,276,0 chrXI 542469 . A G 2719 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.2008;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.11;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2752,303,0 chrXI 542597 . T C 2493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=134;Dels=0.00;FS=10.743;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-0.362;QD=18.60;ReadPosRankSum=2.947;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:3,128:134:99:2526,276,0 chrXI 542873 . C T 3110 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.38;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3143,327,0 chrXI 542924 . G C 3868.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.18;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3868,420,0 chrXI 543203 . G A 2825 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.07;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2858,294,0 chrXI 543396 . C T 3211.99 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3245,339,0 chrXI 543728 . C T 2108 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.29;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2141,234,0 chrXI 543951 . T C 2691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.320;DP=115;Dels=0.00;FS=4.983;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.359;QD=23.40;ReadPosRankSum=3.366;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:4,111:115:99:2724,297,0 chrXI 544019 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=14.2128;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.77;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3393,354,0 chrXI 544374 . A T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.71;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3475,375,0 chrXI 544580 . C T 3084 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.03;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3117,336,0 chrXI 544682 . C A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.7185;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.51;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3405,360,0 chrXI 544698 . G T 3146 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.66;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3179,348,0 chrXI 544856 . G T 2972 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.16;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3005,315,0 chrXI 545136 . C G 3831.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.09;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3831,414,0 chrXI 545405 . T C 3185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=147;Dels=0.00;FS=8.217;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.540;QD=21.67;ReadPosRankSum=2.416;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3218,348,0 chrXI 545416 . G A 3162 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.36;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3195,333,0 chrXI 545874 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=151;Dels=0.00;FS=3.565;HaplotypeScore=6.4553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.231;QD=22.52;ReadPosRankSum=-0.739;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3400,344,0 chrXI 545963 . T C 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=150;Dels=0.00;FS=3.006;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.008;QD=23.33;ReadPosRankSum=2.384;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3500,381,0 chrXI 546387 . C A 3021 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.54;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3054,327,0 chrXI 546403 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=23.33;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2879,309,0 chrXI 546444 . G A 3162 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.75;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3195,348,0 chrXI 546936 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.09;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3512,378,0 chrXI 547133 . A G 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.206;DP=133;Dels=0.00;FS=9.178;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.445;QD=22.48;ReadPosRankSum=3.392;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:4,128:133:99:3023,318,0 chrXI 547332 . C A 4249.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.70;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4249,459,0 chrXI 547855 . T C 2833 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2866,306,0 chrXI 547921 . C A 3742.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3742,391,0 chrXI 548064 . C T 4624.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=15.7969;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.21;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4624,501,0 chrXI 548122 . G A 5036.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=16.3639;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.21;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:5036,535,0 chrXI 548175 . A G 5201.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.97;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5201,553,0 chrXI 548301 . A C 6636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=283;Dels=0.00;FS=6.065;HaplotypeScore=18.7465;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.306;QD=23.45;ReadPosRankSum=2.840;SB=-3.700e+03 GT:AD:DP:GQ:PL 1/1:3,279:283:99:6636,718,0 chrXI 548668 . C T 4791.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=18.5140;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.20;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4791,502,0 chrXI 548697 . A G 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=190;Dels=0.00;FS=3.029;HaplotypeScore=11.1223;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.239;QD=23.70;ReadPosRankSum=2.230;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4503,486,0 chrXI 548841 . A G 3472.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.3300;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.55;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3472,369,0 chrXI 549098 . T A 2074 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.60;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2107,219,0 chrXI 549132 . A C 2050 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.53;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2083,222,0 chrXI 549235 . T G 2158 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.80;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2191,246,0 chrXI 549266 . G A 2293 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=25.20;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2326,246,0 chrXI 549422 . G A 3130 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.45;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3163,333,0 chrXI 549464 . A C 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=132;Dels=0.00;FS=7.185;HaplotypeScore=109.8293;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-0.438;QD=20.87;ReadPosRankSum=2.375;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2788,309,0 chrXI 549543 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.1860;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.96;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3156,327,0 chrXI 549575 . C T 3103 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.87;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3136,327,0 chrXI 549764 . C A 3159 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.40;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3192,339,0 chrXI 550068 . T C 2277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=115;Dels=0.00;FS=8.016;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-1.209;QD=19.80;ReadPosRankSum=2.407;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2310,261,0 chrXI 550278 . C T 4075.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.8297;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.70;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4075,432,0 chrXI 550302 . A G 4428.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=25.02;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4428,477,0 chrXI 550343 . A G 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=158;Dels=0.00;FS=13.119;HaplotypeScore=7.6094;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.455;QD=22.23;ReadPosRankSum=1.276;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:3,154:158:99:3513,378,0 chrXI 550428 . A G 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.791;QD=22.24;ReadPosRankSum=1.686;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3381,369,0 chrXI 550500 . T C 4102.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.36;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4102,453,0 chrXI 551284 . C T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.4372;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.02;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4005,429,0 chrXI 551392 . T C 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=153;Dels=0.00;FS=3.245;HaplotypeScore=11.8262;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.775;QD=23.17;ReadPosRankSum=1.709;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3545,384,0 chrXI 551512 . G T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=26.02;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3279,342,0 chrXI 551750 . T C 3618.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5559;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.28;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3618,399,0 chrXI 551818 . T A 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-0.232;QD=22.43;ReadPosRankSum=1.678;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2882,300,0 chrXI 551893 . C T 2896 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.98;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2929,306,0 chrXI 552591 . C A 2985 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.6355;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.42;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:3018,318,0 chrXI 552627 . C T 3780.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.37;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3780,405,0 chrXI 552756 . C G 4077.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.12;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4077,444,0 chrXI 552901 . T C 4413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=193;Dels=0.00;FS=7.591;HaplotypeScore=11.4878;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.251;QD=22.87;ReadPosRankSum=2.411;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4413,489,0 chrXI 552927 . G A 3960.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.6954;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.29;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3960,409,0 chrXI 552998 . A G 3869.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.59;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3869,414,0 chrXI 553078 . C T 3762.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.8699;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.29;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3762,408,0 chrXI 553084 . A G 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=188;Dels=0.00;FS=3.373;HaplotypeScore=5.6227;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.824;QD=17.98;ReadPosRankSum=1.714;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:3381,387,0 chrXI 553304 . T A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.9700;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.73;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3846,417,0 chrXI 553342 . T C 5091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=0.673;QD=24.59;ReadPosRankSum=1.698;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:5091,544,0 chrXI 553992 . T C 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=126;Dels=0.00;FS=3.116;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.014;QD=22.26;ReadPosRankSum=1.704;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2838,309,0 chrXI 554162 . G A 2606 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=17.73;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2639,285,0 chrXI 554163 . G A 2727 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=18.30;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2760,288,0 chrXI 554207 . T C 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=168;Dels=0.00;FS=2.581;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-1.506;QD=18.65;ReadPosRankSum=2.933;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:3,162:168:99:3167,345,0 chrXI 554227 . A G 3449.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.16;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3449,369,0 chrXI 554305 . C G 3376.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.0067;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.97;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:3376,384,0 chrXI 554554 . C T 2633 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.58;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2666,282,0 chrXI 555181 . A G 1790 filter AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=21.33;MQ0=118;QD=8.29;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:25,191:216:99:1823,195,0 chrXI 555214 . T C 2181 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=206;Dels=0.00;FS=28.752;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=23.05;MQ0=83;MQRankSum=1.370;QD=10.59;ReadPosRankSum=2.410;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:2,204:206:99:2214,237,0 chrXI 555298 . G A 1066 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=12.09;MQ0=196;MQRankSum=0.454;QD=3.81;ReadPosRankSum=-0.170;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:98,180:280:99:1099,102,0 chrXI 555859 . C T 310 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:36:343,36,0 chrXI 556375 . T C 329 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.35;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:39:362,39,0 chrXI 556468 . G A 418 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=10.72;SB=-3.501e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:48:451,48,0 chrXI 556475 . A T 416 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=9.24;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:48:449,48,0 chrXI 556484 . A G 526 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.5903;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=10.12;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:60:559,60,0 chrXI 556642 . C T 2438 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=25.13;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2471,258,0 chrXI 556734 . T C 3563.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.7979;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=24.24;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3563,396,0 chrXI 557093 . T C 2825 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2858,315,0 chrXI 557299 . G A 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.288;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3346;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.555;QD=23.29;ReadPosRankSum=-0.222;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1850,176,0 chrXI 557345 . T C 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=12.096;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.114;QD=21.96;ReadPosRankSum=2.301;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1878,198,0 chrXI 557824 . C G 3284.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3284,354,0 chrXI 558102 . C G 2939 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.77;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2972,339,0 chrXI 558133 . G A 3369.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.02;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3369,357,0 chrXI 558496 . A G 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=143;Dels=0.00;FS=3.041;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.175;QD=20.98;ReadPosRankSum=1.659;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3033,336,0 chrXI 558670 . T C 3915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.1660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.299;QD=24.47;ReadPosRankSum=1.710;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3915,417,0 chrXI 558690 . T C 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=173;Dels=0.00;FS=2.914;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=1.740;QD=21.64;ReadPosRankSum=2.407;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3743,405,0 chrXI 558747 . G A 4002.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.2611;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.21;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4002,435,0 chrXI 558798 . T G 5152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.315;QD=23.85;ReadPosRankSum=1.700;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:5152,588,0 chrXI 558976 . T C 4530.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.07;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4530,501,0 chrXI 558979 . T C 4560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=220;Dels=0.00;FS=4.448;HaplotypeScore=5.2425;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-1.417;QD=20.73;ReadPosRankSum=1.653;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4560,498,0 chrXI 559170 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.75;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2708,282,0 chrXI 559244 . A C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.725;DP=121;Dels=0.00;FS=2.424;HaplotypeScore=4.8030;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.608;QD=23.14;ReadPosRankSum=2.225;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2833,294,0 chrXI 559313 . C T 2115 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2148,231,0 chrXI 559408 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.56;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3561,387,0 chrXI 559595 . G A 3876.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.23;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3876,406,0 chrXI 559636 . T A 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.606;QD=21.83;ReadPosRankSum=1.710;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3492,378,0 chrXI 559644 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.7981;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.15;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3341,346,0 chrXI 559707 . T C 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.204;QD=22.06;ReadPosRankSum=1.711;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3552,384,0 chrXI 559809 . G A 2984 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.61;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3017,318,0 chrXI 560783 . A G 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=145;Dels=0.00;FS=4.371;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.538;QD=26.08;ReadPosRankSum=1.708;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3781,405,0 chrXI 561047 . T C 1920 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.0347;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.20;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1953,213,0 chrXI 561071 . C T 1856 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.62;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1889,198,0 chrXI 561959 . G A 6254.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=15.1878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:6254,678,0 chrXI 562081 . C T 6366.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=27.4096;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.30;SB=-3.294e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:6366,661,0 chrXI 562229 . G A 4187.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.15;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4187,433,0 chrXI 562348 . A G 5648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=13.7582;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.884;QD=23.05;ReadPosRankSum=1.718;SB=-2.910e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5648,610,0 chrXI 562426 . T C 4305.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.42;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4305,462,0 chrXI 562470 . G T 5053.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.53;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5053,526,0 chrXI 562768 . T C 4840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=222;Dels=0.00;FS=10.115;HaplotypeScore=18.6875;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.017;QD=21.80;ReadPosRankSum=2.394;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:2,218:222:99:4840,520,0 chrXI 562866 . A G 4300.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.61;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4300,468,0 chrXI 563008 . C T 5111.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.0347;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.08;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5111,538,0 chrXI 563181 . G A 4726.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.8979;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.99;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4726,493,0 chrXI 563365 . T C 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.00;FS=3.039;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-1.404;QD=25.81;ReadPosRankSum=2.376;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3458,381,0 chrXI 563390 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.56;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3450,363,0 chrXI 563641 . A T 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=3.358;HaplotypeScore=5.9089;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.466;QD=22.22;ReadPosRankSum=1.466;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2655,279,0 chrXI 563812 . T C 2633 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.31;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2666,291,0 chrXI 564538 . T C 2149 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.28;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2182,246,0 chrXI 564676 . C T 2565 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2598,273,0 chrXI 564715 . T G 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=25.09;ReadPosRankSum=1.701;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2843,303,0 chrXI 565014 . T C 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=3.402;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.000;QD=23.30;ReadPosRankSum=1.672;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2736,294,0 chrXI 565671 . A G 5066.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.35;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5066,549,0 chrXI 565796 . G A 4854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.420;DP=189;Dels=0.00;FS=3.127;HaplotypeScore=9.6042;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.714;QD=25.68;ReadPosRankSum=-1.127;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4854,484,0 chrXI 566044 . A G 896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.461;QD=17.57;ReadPosRankSum=1.664;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:929,99,0 chrXI 566085 . C T 401 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=14.32;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:45:434,45,0 chrXI 566095 . A C 402 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=9.35;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,41:43:48:435,48,0 chrXI 566185 . C T 1818 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.6178;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.72;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1851,198,0 chrXI 566379 . G A 4201.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=25.16;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4201,442,0 chrXI 566530 . T C 4193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=214;Dels=0.00;FS=5.966;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=-0.237;QD=19.59;ReadPosRankSum=2.825;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:3,209:214:99:4193,474,0 chrXI 566543 . T C 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.420;DP=218;Dels=0.00;FS=8.562;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=0.320;QD=17.74;ReadPosRankSum=3.363;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:4,211:218:99:3867,420,0 chrXI 566551 . T C 3862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=216;Dels=0.00;FS=5.490;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-0.341;QD=17.88;ReadPosRankSum=2.939;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:3,212:215:99:3862,414,0 chrXI 566653 . G A 5522.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=12.2596;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.60;SB=-3.150e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5522,583,0 chrXI 566731 . G A 6095.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=16.4963;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.83;SB=-3.017e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6095,663,0 chrXI 566840 . G A 7494.01 PASS AC=2;AF=1.00;AN=2;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=21.9189;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.04;SB=-3.472e+03 GT:AD:DP:GQ:PL 1/1:0,339:340:99:7494,796,0 chrXI 567055 . G A 6507.01 PASS AC=2;AF=1.00;AN=2;DP=339;Dels=0.00;FS=0.000;HaplotypeScore=15.1217;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.19;SB=-3.063e+03 GT:AD:DP:GQ:PL 1/1:0,339:339:99:6507,694,0 chrXI 567076 . T G 5667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=304;Dels=0.00;FS=13.716;HaplotypeScore=18.8639;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.440;QD=18.64;ReadPosRankSum=2.896;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:3,296:303:99:5667,621,0 chrXI 567277 . T C 4105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=187;Dels=0.00;FS=3.227;HaplotypeScore=13.2384;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.796;QD=21.95;ReadPosRankSum=1.695;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4105,447,0 chrXI 567598 . T G 3326.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6565;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.16;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3326,357,0 chrXI 567633 . C T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=19.1958;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.65;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3255,351,0 chrXI 567885 . G A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.35;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3375,360,0 chrXI 568028 . A G 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.197;QD=18.91;ReadPosRankSum=1.628;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3191,363,0 chrXI 568037 . T C 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=164;Dels=0.00;FS=6.320;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-0.188;QD=18.30;ReadPosRankSum=2.404;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3034,342,0 chrXI 568100 . T C 3900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=186;Dels=0.00;FS=2.896;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.839;QD=20.97;ReadPosRankSum=2.410;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:3900,441,0 chrXI 568197 . A T 4249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.4375;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.577;QD=21.79;ReadPosRankSum=1.714;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4249,425,0 chrXI 568283 . T C 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=180;Dels=0.00;FS=3.362;HaplotypeScore=15.6388;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.847;QD=22.93;ReadPosRankSum=1.713;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4128,453,0 chrXI 568316 . T C 5114.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.46;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5114,555,0 chrXI 568472 . C T 2790 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.06;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2823,294,0 chrXI 568502 . T C 3298.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.14;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3298,372,0 chrXI 568908 . G A 5058.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.6343;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.75;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5058,549,0 chrXI 569085 . T C 3200 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.8122;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.25;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,152:158:99:3233,348,0 chrXI 569468 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3136,333,0 chrXI 569606 . C T 3409.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3409,366,0 chrXI 570049 . G A 2275 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.13;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2308,243,0 chrXI 570352 . G A 2342 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.14;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2375,255,0 chrXI 570688 . T C 3864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=180;Dels=0.00;FS=3.366;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=1.051;QD=21.47;ReadPosRankSum=1.713;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:3864,420,0 chrXI 570835 . A G 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.7608;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.843;QD=20.09;ReadPosRankSum=1.709;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3087,339,0 chrXI 570916 . C T 2571 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=17.49;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2604,267,0 chrXI 570918 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=16.72;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2441,261,0 chrXI 570938 . C T 1854 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.82;MQ0=0;QD=13.94;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1887,210,0 chrXI 570942 . T C 1636 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;QD=12.58;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1669,192,0 chrXI 570944 . A G 1653 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.50;MQ0=0;MQRankSum=0.914;QD=13.02;ReadPosRankSum=1.705;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:1686,183,0 chrXI 571008 . T C 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.8729;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-1.020;QD=20.03;ReadPosRankSum=1.700;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2176,234,0 chrXI 571051 . G A 3064 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.04;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3097,333,0 chrXI 571146 . T A 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.196;DP=126;Dels=0.00;FS=6.338;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=-0.439;QD=21.40;ReadPosRankSum=2.333;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2730,297,0 chrXI 571204 . G C 2968 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=23.19;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3001,324,0 chrXI 571236 . A G 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=1.302;QD=22.28;ReadPosRankSum=1.705;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2930,324,0 chrXI 571243 . T A 3002 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.64;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3035,312,0 chrXI 571283 . A T 1756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=1.039;QD=18.48;ReadPosRankSum=1.696;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1789,189,0 chrXI 571323 . C T 1214 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=18.68;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1247,132,0 chrXI 571329 . A G 1116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=-0.731;QD=17.44;ReadPosRankSum=1.080;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:3,61:64:99:1149,109,0 chrXI 571557 . C T 1626 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=75.3876;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.58;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1659,174,0 chrXI 571596 . A G 1698 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.30;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1731,183,0 chrXI 571752 . G A 3008 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.3234;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.89;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3041,336,0 chrXI 571872 . T C 4403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=193;Dels=0.00;FS=2.948;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.737;QD=22.81;ReadPosRankSum=2.424;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4403,489,0 chrXI 572316 . T C 4220.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=206;Dels=0.00;FS=3.979;HaplotypeScore=16.0707;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=1.247;QD=20.49;ReadPosRankSum=1.715;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,199:206:99:4220,471,0 chrXI 572346 . C T 4421.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.6157;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.39;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4421,474,0 chrXI 572448 . T A 4252.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=5.156;HaplotypeScore=14.2660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.204;QD=24.02;ReadPosRankSum=1.693;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4252,445,0 chrXI 572498 . T C 3366.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.54;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3366,366,0 chrXI 572586 . A G 2481 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=4.3802;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=19.54;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2514,276,0 chrXI 572589 . G A 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.185;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.1688;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=0.974;QD=19.68;ReadPosRankSum=2.052;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2592,276,0 chrXI 572739 . C T 2970 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.16;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3003,324,0 chrXI 573116 . G A 5218.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.2655;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.02;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5218,547,0 chrXI 573180 . T A 4677.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.3330;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.36;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4677,507,0 chrXI 573386 . T A 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.330;QD=22.55;ReadPosRankSum=1.711;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3789,417,0 chrXI 573991 . G A 4891.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.5572;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.98;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4891,514,0 chrXI 574134 . C T 5280.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.06;SB=-2.951e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5280,553,0 chrXI 574626 . C T 4479.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.74;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4479,480,0 chrXI 574667 . G A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4067,427,0 chrXI 574927 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=24.11;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2902,315,0 chrXI 575132 . A G 3280.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.12;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3280,354,0 chrXI 575153 . A T 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.01;FS=3.857;HaplotypeScore=3.9092;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-0.406;QD=16.66;ReadPosRankSum=1.673;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:2965,315,0 chrXI 575157 . T C 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.9321;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-1.200;QD=17.02;ReadPosRankSum=2.914;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:3,173:177:99:3045,336,0 chrXI 575327 . G A 3569.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.33;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3569,373,0 chrXI 575413 . T C 3800.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.71;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3800,408,0 chrXI 575606 . T G 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=105;Dels=0.00;FS=5.119;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.100;QD=21.28;ReadPosRankSum=1.699;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2267,249,0 chrXI 575717 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3331,354,0 chrXI 575843 . A G 2222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=107;Dels=0.00;FS=9.302;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.472;QD=20.77;ReadPosRankSum=2.289;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2255,258,0 chrXI 575852 . A G 2228 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.28;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2261,243,0 chrXI 575902 . C T 2375 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.06;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2408,246,0 chrXI 576007 . C T 2278 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.71;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2311,243,0 chrXI 576483 . C G 3966.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=93.2834;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.55;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3966,459,0 chrXI 576555 . A G 1943 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=11.70;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:1976,234,0 chrXI 576797 . G A 4576.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.00;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4576,481,0 chrXI 576947 . A G 4895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=204;Dels=0.00;FS=3.680;HaplotypeScore=17.6361;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.152;QD=24.00;ReadPosRankSum=1.647;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4895,520,0 chrXI 577185 . A G 4506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.7579;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.360;QD=22.31;ReadPosRankSum=1.715;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4506,507,0 chrXI 577326 . C T 4511.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.4396;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.49;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4511,483,0 chrXI 577353 . T C 4043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.5368;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.915;QD=22.46;ReadPosRankSum=1.713;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:4043,441,0 chrXI 577440 . A G 4193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=193;Dels=0.00;FS=2.731;HaplotypeScore=12.2655;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.138;QD=21.73;ReadPosRankSum=2.424;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,189:193:99:4193,468,0 chrXI 577769 . T C 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=188;Dels=0.00;FS=3.405;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=0.866;QD=19.72;ReadPosRankSum=1.713;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,183:188:99:3708,399,0 chrXI 577779 . G T 4091.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.31;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4091,430,0 chrXI 578482 . A G 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=191;Dels=0.00;FS=7.375;HaplotypeScore=21.9008;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.135;QD=21.17;ReadPosRankSum=2.385;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4044,468,0 chrXI 578669 . G A 4114.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.60;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4114,432,0 chrXI 578716 . C T 4463.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=22.89;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4463,474,0 chrXI 578824 . T C 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=148;Dels=0.00;FS=7.741;HaplotypeScore=8.1382;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.988;QD=22.87;ReadPosRankSum=2.367;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3385,369,0 chrXI 578880 . C G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.0500;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=22.63;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3349,363,0 chrXI 578904 . G C 2697 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=22.86;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2730,291,0 chrXI 578942 . G A 1790 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=17.38;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1823,198,0 chrXI 578945 . T A 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=3.316;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=-0.420;QD=18.79;ReadPosRankSum=1.698;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1968,204,0 chrXI 579126 . T C 2428 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.2775;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.87;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2461,270,0 chrXI 579180 . A G 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=126;Dels=0.00;FS=7.737;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=2.079;QD=23.09;ReadPosRankSum=2.294;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2942,312,0 chrXI 579391 . T C 4214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=180;Dels=0.00;FS=3.015;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.346;QD=23.41;ReadPosRankSum=2.394;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:4214,468,0 chrXI 579541 . T C 2015 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.15;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2048,237,0 chrXI 579622 . T G 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=1.207;QD=18.69;ReadPosRankSum=1.592;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1883,210,0 chrXI 579634 . G T 2022 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.22;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2055,219,0 chrXI 579792 . T C 1499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.462;QD=23.06;ReadPosRankSum=2.374;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1532,171,0 chrXI 580030 . T C 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=3.565;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.132;QD=19.87;ReadPosRankSum=1.640;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3073,333,0 chrXI 580181 . C T 4515.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=25.08;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4515,481,0 chrXI 580214 . G A 2575 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=20.60;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2608,282,0 chrXI 580227 . A G 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=0.822;QD=18.70;ReadPosRankSum=1.703;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2240,252,0 chrXI 580415 . C T 5552.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=21.4860;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.14;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,228:230:99:5552,586,0 chrXI 580625 . T C 4863.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.81;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4863,528,0 chrXI 580901 . G A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=4.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:4:6:49,6,0 chrXI 581163 . T C 1051 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.90;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1084,123,0 chrXI 584441 . G A 3729.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.31;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3729,411,0 chrXI 585038 . C A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.0347;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.32;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3418,366,0 chrXI 586229 . G A 2748 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=20.21;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2781,300,0 chrXI 586256 . T C 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=152;Dels=0.00;FS=9.746;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;MQRankSum=-0.780;QD=17.68;ReadPosRankSum=2.900;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:3,148:152:99:2721,291,0 chrXI 586259 . A G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=152;Dels=0.00;FS=3.032;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;MQRankSum=-1.399;QD=17.47;ReadPosRankSum=2.417;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2688,294,0 chrXI 586293 . C T 1883 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=13.74;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:1916,204,0 chrXI 586298 . G A 1733 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=13.13;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1766,183,0 chrXI 586366 . T C 1711 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6733;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.44;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1744,192,0 chrXI 586587 . A G 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.184;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.359;QD=23.92;ReadPosRankSum=1.664;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2473,264,0 chrXI 587074 . G A 4947.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.80;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4947,526,0 chrXI 587134 . T C 4134.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.53;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4134,447,0 chrXI 587530 . T C 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.662;DP=128;Dels=0.00;FS=5.808;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.087;QD=23.20;ReadPosRankSum=2.945;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:3002,324,0 chrXI 587857 . G A 4484.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4484,469,0 chrXI 588209 . G T 3119 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=20.66;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3152,342,0 chrXI 588593 . A G 5956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=251;Dels=0.00;FS=3.505;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-1.525;QD=23.73;ReadPosRankSum=1.704;SB=-2.858e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5956,640,0 chrXI 588609 . T C 5498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=9.4215;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-1.166;QD=21.73;ReadPosRankSum=1.718;SB=-2.970e+03 GT:AD:DP:GQ:PL 1/1:1,250:253:99:5498,600,0 chrXI 588805 . G A 5239.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=21.3655;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.78;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5239,573,0 chrXI 588930 . T C 4001.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=19.33;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4001,435,0 chrXI 588939 . T C 3768.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=18.38;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:3768,414,0 chrXI 589078 . A G 3965.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.46;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3965,450,0 chrXI 589279 . A G 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.5323;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.183;QD=23.52;ReadPosRankSum=1.711;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3786,411,0 chrXI 589327 . C T 2612 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=15.4802;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.41;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2645,282,0 chrXI 589369 . A G 2983 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=19.50;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3016,330,0 chrXI 589384 . T C 3122 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.27;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3155,354,0 chrXI 589512 . C A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=23.39;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3391,372,0 chrXI 589534 . G C 3172 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.73;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3205,348,0 chrXI 589580 . G T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.5893;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.37;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3633,396,0 chrXI 589694 . T C 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-0.109;QD=20.64;ReadPosRankSum=1.708;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2984,336,0 chrXI 589750 . T A 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=142;Dels=0.01;FS=6.836;HaplotypeScore=27.7955;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=-1.501;QD=20.62;ReadPosRankSum=2.344;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2961,306,0 chrXI 589759 . G C 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=144;Dels=0.00;FS=2.979;HaplotypeScore=9.9283;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=-0.541;QD=19.85;ReadPosRankSum=2.415;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:2891,318,0 chrXI 589814 . C T 3086 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.3332;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=20.17;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3119,327,0 chrXI 589828 . T C 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=152;Dels=0.00;FS=4.386;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=0.149;QD=20.74;ReadPosRankSum=1.709;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3186,342,0 chrXI 589884 . A G 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=146;Dels=0.00;FS=5.862;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=-0.504;QD=17.50;ReadPosRankSum=2.867;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:3,141:146:99:2588,279,0 chrXI 589892 . C G 2399 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=17.26;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2432,264,0 chrXI 589939 . T C 2677 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.28;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2710,303,0 chrXI 589997 . T G 2266 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.4806;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=20.41;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2299,249,0 chrXI 590023 . C T 2008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.407;DP=97;Dels=0.00;FS=3.590;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-0.866;QD=20.70;ReadPosRankSum=1.660;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2041,192,0 chrXI 590065 . C T 1759 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=15.71;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1792,186,0 chrXI 590067 . T G 1656 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=14.92;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1689,192,0 chrXI 590322 . A G 3640.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=15.8235;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.18;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3640,387,0 chrXI 590748 . A G 5728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=246;Dels=0.00;FS=2.758;HaplotypeScore=23.1476;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.304;QD=23.28;ReadPosRankSum=2.410;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:2,244:246:99:5728,619,0 chrXI 590994 . C T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.39;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3555,381,0 chrXI 591644 . T C 2977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-1.546;QD=22.73;ReadPosRankSum=1.705;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3010,321,0 chrXI 591688 . G A 3983.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.29;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3983,417,0 chrXI 591782 . T C 4611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.727;QD=22.94;ReadPosRankSum=1.697;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4611,507,0 chrXI 591912 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=174;Dels=0.00;FS=3.429;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-1.155;QD=19.55;ReadPosRankSum=1.712;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3401,369,0 chrXI 591920 . T C 3331.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=18.82;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:3331,360,0 chrXI 592322 . C T 5183.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.0433;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=24.56;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5183,547,0 chrXI 592340 . A G 4356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;MQRankSum=0.686;QD=20.45;ReadPosRankSum=1.716;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:4356,474,0 chrXI 592349 . A G 4097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=215;Dels=0.00;FS=3.031;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-1.325;QD=19.06;ReadPosRankSum=1.700;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:1,212:215:99:4097,468,0 chrXI 592478 . A G 4840.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4840,522,0 chrXI 592577 . A G 4273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.963;DP=190;Dels=0.00;FS=5.972;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.709;QD=22.49;ReadPosRankSum=2.857;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:3,187:190:99:4273,465,0 chrXI 592615 . T C 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.695;DP=195;Dels=0.00;FS=7.661;HaplotypeScore=9.3572;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.385;QD=18.33;ReadPosRankSum=3.452;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:5,188:195:99:3574,405,0 chrXI 592616 . C G 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.413;DP=195;Dels=0.00;FS=4.819;HaplotypeScore=10.0882;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=1.621;QD=18.23;ReadPosRankSum=3.005;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:4,184:195:99:3555,402,0 chrXI 594186 . T G 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=157;Dels=0.00;FS=5.831;HaplotypeScore=12.0606;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.011;QD=21.64;ReadPosRankSum=1.710;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3397,366,0 chrXI 594718 . A G 2171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=97;Dels=0.00;FS=3.056;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=0.376;QD=22.38;ReadPosRankSum=2.398;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:2,94:97:99:2204,240,0 chrXI 594744 . C T 2171 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.34;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2204,231,0 chrXI 594835 . A G 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.9011;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.468;QD=23.43;ReadPosRankSum=1.679;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3102,342,0 chrXI 594943 . C T 2063 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.49;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2096,213,0 chrXI 594957 . C T 1786 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.77;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1819,189,0 chrXI 594987 . T C 1897 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.36;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,95:98:99:1930,210,0 chrXI 595260 . T G 2230 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.08;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2263,261,0 chrXI 595509 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.23;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3076,324,0 chrXI 595517 . A G 2742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=131;Dels=0.00;FS=2.960;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.785;QD=20.93;ReadPosRankSum=2.412;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2775,303,0 chrXI 595879 . C T 3544.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.47;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3544,369,0 chrXI 595973 . C A 4904.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.7848;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=25.28;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4904,502,0 chrXI 596000 . A G 4345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=4.748;HaplotypeScore=10.3017;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.253;QD=23.24;ReadPosRankSum=1.713;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4345,492,0 chrXI 596201 . A G 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-1.581;QD=21.71;ReadPosRankSum=2.367;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2617,288,0 chrXI 596520 . C G 2312 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2345,255,0 chrXI 596556 . C G 2731 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2764,321,0 chrXI 596823 . A G 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.354;QD=22.00;ReadPosRankSum=1.693;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1991,213,0 chrXI 596996 . G A 1908 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=76.2766;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.99;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1941,204,0 chrXI 597058 . C T 1875 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=16.8668;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.38;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1908,198,0 chrXI 597106 . T C 2810 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.66;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2843,312,0 chrXI 597150 . A G 3208 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.75;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3241,348,0 chrXI 597220 . T C 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.128;DP=161;Dels=0.00;FS=10.197;HaplotypeScore=11.0845;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.174;QD=24.01;ReadPosRankSum=4.146;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:6,155:161:99:3865,423,0 chrXI 597399 . A G 4556.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.4220;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=22.67;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4556,492,0 chrXI 597700 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.14;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3772,402,0 chrXI 597862 . C T 3086 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.57;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3119,327,0 chrXI 597866 . A G 3159 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.38;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3192,345,0 chrXI 598496 . T C 4809.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.47;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4809,519,0 chrXI 598795 . A T 5396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=219;Dels=0.00;FS=6.746;HaplotypeScore=13.7707;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.488;QD=24.64;ReadPosRankSum=2.393;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:5396,565,0 chrXI 598922 . C G 4122.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4122,462,0 chrXI 599122 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.6338;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.11;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3172,336,0 chrXI 599337 . T C 4309.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.68;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4309,468,0 chrXI 599535 . A G 4604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=16.0679;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.221;QD=21.51;ReadPosRankSum=1.716;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:1,209:214:99:4604,522,0 chrXI 599658 . G A 4987.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.6130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4987,534,0 chrXI 599778 . G A 4967.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.34;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4967,511,0 chrXI 599836 . G T 3850.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.8124;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.37;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3850,417,0 chrXI 599871 . G A 2748 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2781,291,0 chrXI 599953 . C G 3283.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.79;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3283,354,0 chrXI 600024 . T C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=145;Dels=0.00;FS=4.354;HaplotypeScore=16.5942;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.436;QD=22.17;ReadPosRankSum=1.707;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,138:145:99:3248,354,0 chrXI 600099 . G A 3495.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8501;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=26.28;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3495,361,0 chrXI 600159 . T C 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.713;DP=166;Dels=0.00;FS=4.833;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-1.379;QD=24.41;ReadPosRankSum=3.751;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:5,161:166:99:4052,447,0 chrXI 600363 . G A 6203.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=25.01;SB=-3.361e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:6203,652,0 chrXI 600406 . T G 5377.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.04;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:0,241:244:99:5377,588,0 chrXI 600423 . G A 5675.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.86;SB=-3.211e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:5675,610,0 chrXI 600450 . A G 5775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=289;Dels=0.00;FS=2.856;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-1.689;QD=19.98;ReadPosRankSum=2.415;SB=-3.033e+03 GT:AD:DP:GQ:PL 1/1:2,285:289:99:5775,630,0 chrXI 601065 . A G 4813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=219;Dels=0.00;FS=3.256;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-0.652;QD=21.98;ReadPosRankSum=1.700;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:4813,546,0 chrXI 601089 . A G 5206.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=6.6789;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.87;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5206,573,0 chrXI 601260 . G C 4905.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.7855;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.58;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4905,523,0 chrXI 601632 . T C 2917 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5326;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.79;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2950,321,0 chrXI 602166 . T G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2524;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3267,351,0 chrXI 603232 . C G 2228 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2261,240,0 chrXI 603765 . T C 5457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.1541;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.690;QD=24.04;ReadPosRankSum=1.717;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:5457,588,0 chrXI 604356 . A G 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.533;QD=22.22;ReadPosRankSum=1.679;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2966,330,0 chrXI 604816 . C T 4897.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.9913;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.73;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4897,505,0 chrXI 605622 . C T 4018.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6329;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.27;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4018,421,0 chrXI 606047 . C T 4948.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=19.5651;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.80;SB=-2.840e+03 GT:AD:DP:GQ:PL 1/1:0,212:217:99:4948,531,0 chrXI 606185 . A G 4082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=182;Dels=0.00;FS=3.015;HaplotypeScore=13.3318;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.032;QD=22.43;ReadPosRankSum=2.328;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4082,441,0 chrXI 606902 . T C 3586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=180;Dels=0.00;FS=3.259;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=0.885;QD=19.92;ReadPosRankSum=1.713;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3586,390,0 chrXI 606908 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=184;Dels=0.00;FS=3.009;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=0.874;QD=18.79;ReadPosRankSum=2.423;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3457,378,0 chrXI 607403 . T G 3784.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0612;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.40;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3784,414,0 chrXI 607676 . T C 3879.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.1340;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.17;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3879,426,0 chrXI 608132 . T C 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.483;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=16.5871;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.384;QD=21.54;ReadPosRankSum=1.711;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3641,390,0 chrXI 608429 . T C 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=4.246;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.683;QD=20.21;ReadPosRankSum=1.669;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2236,240,0 chrXI 608448 . C T 2567 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.72;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2600,267,0 chrXI 608493 . C T 2686 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.84;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2719,279,0 chrXI 608546 . G A 1849 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1882,195,0 chrXI 608639 . A G 893 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=17.51;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:926,102,0 chrXI 608641 . G A 995 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.09;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1028,108,0 chrXI 608711 . A T 1077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.334;QD=18.89;ReadPosRankSum=1.672;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1110,117,0 chrXI 608840 . G A 1488 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=26.57;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1521,159,0 chrXI 609095 . C T 3061 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.6944;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.71;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3094,327,0 chrXI 609137 . C T 4245.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.9246;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.99;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4245,447,0 chrXI 609362 . C T 7150.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=26.6514;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.14;SB=-3.922e+03 GT:AD:DP:GQ:PL 1/1:0,308:309:99:7150,748,0 chrXI 609438 . A G 6975.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=18.0057;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.21;SB=-3.752e+03 GT:AD:DP:GQ:PL 1/1:0,310:314:99:6975,771,0 chrXI 609526 . C G 6514.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=19.7677;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.08;SB=-3.466e+03 GT:AD:DP:GQ:PL 1/1:0,292:295:99:6514,738,0 chrXI 609667 . A G 4778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.533;QD=21.82;ReadPosRankSum=2.382;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:4778,513,0 chrXI 609738 . A G 4911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.965;QD=23.17;ReadPosRankSum=2.403;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:2,208:212:99:4911,543,0 chrXI 610106 . T C 5510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.702;QD=23.85;ReadPosRankSum=-0.022;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5510,604,0 chrXI 610214 . C T 4800.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=24.12;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4800,508,0 chrXI 610232 . A T 4861.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.6173;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.30;SB=-2.809e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4861,525,0 chrXI 610295 . C T 4612.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.7875;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.28;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4612,490,0 chrXI 610361 . G A 3927.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.83;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3927,414,0 chrXI 610394 . G A 3983.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.85;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3983,432,0 chrXI 610451 . G A 4054.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=23.99;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4054,424,0 chrXI 610473 . C T 3673.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.53;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3673,387,0 chrXI 610521 . C T 3528.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.84;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3528,366,0 chrXI 610937 . G T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.0233;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.37;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3260,345,0 chrXI 611187 . C G 3004 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.61;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3037,324,0 chrXI 611206 . T C 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.734;QD=18.68;ReadPosRankSum=2.400;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2816,303,0 chrXI 611219 . T C 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-1.588;QD=18.28;ReadPosRankSum=1.708;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2666,282,0 chrXI 611427 . G A 3900.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=23.49;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3900,409,0 chrXI 611581 . C A 3618.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.75;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3618,402,0 chrXI 611629 . C G 3359.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.65;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3359,372,0 chrXI 611929 . G A 5160.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.69;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5160,535,0 chrXI 612127 . C T 4617.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.20;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4617,495,0 chrXI 612138 . G A 4313.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.2538;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.67;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4313,454,0 chrXI 612307 . C T 2345 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.39;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2378,249,0 chrXI 612420 . T C 688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DP=41;Dels=0.00;FS=8.239;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.520;QD=16.78;ReadPosRankSum=1.646;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,39:41:78:721,78,0 chrXI 612496 . T C 693 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=26.65;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:78:726,78,0 chrXI 612505 . G A 537 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.89;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:60:570,60,0 chrXI 612508 . A G 521 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.68;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:60:554,60,0 chrXI 612630 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=26.37;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1932,204,0 chrXI 612875 . T C 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-0.363;QD=21.55;ReadPosRankSum=1.711;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3599,387,0 chrXI 612914 . G A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=0;QD=22.16;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3545,378,0 chrXI 612940 . T C 3778.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.8886;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=21.47;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3778,423,0 chrXI 613340 . A G 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=162;Dels=0.00;FS=3.617;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=0.613;QD=23.94;ReadPosRankSum=1.646;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3878,426,0 chrXI 613391 . T C 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;MQRankSum=0.471;QD=24.22;ReadPosRankSum=1.612;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4190,465,0 chrXI 613535 . A G 6056.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=19.1650;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=25.13;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:6056,649,0 chrXI 613583 . G A 4638.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=21.98;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4638,487,0 chrXI 613616 . A G 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=3.435;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;MQRankSum=-1.280;QD=15.88;ReadPosRankSum=1.711;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2590,294,0 chrXI 613619 . G A 2415 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=15.00;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2448,270,0 chrXI 613649 . T A 384 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.06;MQ0=0;QD=2.61;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:45:417,45,0 chrXI 613652 . T A 492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.94;MQ0=0;MQRankSum=-0.155;QD=3.15;ReadPosRankSum=1.710;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:57:525,57,0 chrXI 613790 . G A 512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.797;DP=183;Dels=0.03;FS=0.898;HaplotypeScore=436.9791;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=1.592;QD=2.80;ReadPosRankSum=3.631;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:43,134:177:33:545,33,0 chrXI 614125 . C A 2766 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.61;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2799,309,0 chrXI 614193 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=20.79;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3235,342,0 chrXI 614248 . G A 47.97 filter AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=139.3977;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=0.31;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:9:80,9,0 chrXI 614464 . A C 5224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=214;Dels=0.00;FS=7.429;HaplotypeScore=15.3843;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=0.425;QD=24.41;ReadPosRankSum=2.391;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:2,209:213:99:5224,567,0 chrXI 614538 . T A 4712.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.42;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4712,513,0 chrXI 614836 . A G 4511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=208;Dels=0.00;FS=2.987;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.694;QD=21.69;ReadPosRankSum=2.378;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:2,205:208:99:4511,498,0 chrXI 614931 . C T 4900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.1946;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.132;QD=24.75;ReadPosRankSum=-0.149;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4900,537,0 chrXI 615148 . C T 5230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.170;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=13.0151;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.371;QD=23.14;ReadPosRankSum=0.309;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:1,223:226:99:5230,530,0 chrXI 615175 . A G 4868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=216;Dels=0.00;FS=2.798;HaplotypeScore=9.2416;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.314;QD=22.54;ReadPosRankSum=2.381;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:2,212:216:99:4868,531,0 chrXI 615234 . A G 4873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=214;Dels=0.00;FS=3.461;HaplotypeScore=10.3017;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.480;QD=22.77;ReadPosRankSum=1.700;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4873,552,0 chrXI 615345 . G C 3504.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.9073;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.98;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3504,396,0 chrXI 615433 . T C 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=5.499;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.988;QD=19.72;ReadPosRankSum=1.662;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2972,318,0 chrXI 615578 . T C 1998 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2031,219,0 chrXI 615858 . C T 2269 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.66;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2302,246,0 chrXI 616020 . C T 4857.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=17.1936;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.13;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4857,511,0 chrXI 616059 . A G 4353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=183;Dels=0.00;FS=6.801;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.957;QD=23.79;ReadPosRankSum=2.422;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:4353,465,0 chrXI 616170 . T C 4427.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=21.28;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4427,501,0 chrXI 616176 . C T 4382.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=20.67;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4382,480,0 chrXI 616203 . T C 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=-0.306;QD=18.00;ReadPosRankSum=1.716;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:3978,435,0 chrXI 616209 . C T 3804.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=17.69;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:3804,408,0 chrXI 616404 . T C 4343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=187;Dels=0.00;FS=4.500;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-1.322;QD=23.22;ReadPosRankSum=1.713;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4343,471,0 chrXI 616713 . T C 3992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.516;QD=22.55;ReadPosRankSum=0.177;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3992,444,0 chrXI 616902 . A G 2505 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.12;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2538,285,0 chrXI 616917 . G A 2762 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.01;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2795,291,0 chrXI 617158 . T G 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.2338;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.465;QD=22.49;ReadPosRankSum=2.419;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3621,399,0 chrXI 617508 . A C 2500 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=21.37;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2533,276,0 chrXI 617524 . A G 2005 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=19.85;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2038,228,0 chrXI 617543 . A T 1076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.500;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5433;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=-0.753;QD=13.97;ReadPosRankSum=4.084;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:7,70:77:99:1109,123,0 chrXI 617954 . A G 2045 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2078,222,0 chrXI 618498 . T C 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=158;Dels=0.00;FS=3.910;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.397;QD=22.55;ReadPosRankSum=1.665;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,154:158:99:3563,381,0 chrXI 618779 . C A 3918.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=12.0870;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=24.04;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3918,406,0 chrXI 619007 . A G 2432 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.1145;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=18.56;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2465,270,0 chrXI 619029 . G A 2506 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=19.89;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2539,264,0 chrXI 619034 . T C 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.171;DP=141;Dels=0.00;FS=2.883;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;MQRankSum=0.201;QD=16.60;ReadPosRankSum=2.310;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2373,267,0 chrXI 619045 . G A 2696 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4989;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=18.85;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2729,297,0 chrXI 619260 . A T 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.752;DP=134;Dels=0.00;FS=2.589;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=-0.301;QD=21.72;ReadPosRankSum=2.918;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:2943,306,0 chrXI 619469 . A C 1482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-0.049;QD=20.30;ReadPosRankSum=1.683;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,69:73:99:1515,159,0 chrXI 619475 . G A 1401 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=19.19;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1434,156,0 chrXI 619794 . G A 6080.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.6025;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.23;SB=-3.200e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:6080,640,0 chrXI 620047 . G A 4116.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.12;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4116,447,0 chrXI 620113 . T C 3075 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.47;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3108,351,0 chrXI 620666 . G A 3817.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.0648;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.95;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3817,405,0 chrXI 620743 . A T 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=136;Dels=0.00;FS=2.641;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.461;QD=23.44;ReadPosRankSum=2.413;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3221,348,0 chrXI 620930 . G A 2059 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=23.40;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2092,222,0 chrXI 620968 . C A 1846 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.04;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.03;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1879,201,0 chrXI 620969 . C T 1906 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.04;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.65;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1939,204,0 chrXI 621088 . T C 3413.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.6563;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.21;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3413,378,0 chrXI 621343 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.66;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3308,354,0 chrXI 621359 . A T 3560.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=24.22;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3560,370,0 chrXI 621586 . G A 2938 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3404;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=20.12;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2971,321,0 chrXI 621589 . T A 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=147;Dels=0.00;FS=2.612;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-1.129;QD=20.32;ReadPosRankSum=2.383;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3020,315,0 chrXI 621619 . A G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=160;Dels=0.00;FS=4.638;HaplotypeScore=5.7050;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=0.758;QD=19.57;ReadPosRankSum=1.689;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3164,333,0 chrXI 621820 . G A 4373.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=24.57;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4373,463,0 chrXI 622408 . C G 3272.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3272,351,0 chrXI 623020 . G A 3603.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.3798;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.52;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3603,390,0 chrXI 623443 . A G 4154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=168;Dels=0.00;FS=3.362;HaplotypeScore=11.6555;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.882;QD=24.73;ReadPosRankSum=1.649;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:4154,456,0 chrXI 623581 . A T 2721 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8847;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2754,291,0 chrXI 623815 . A G 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=145;Dels=0.00;FS=4.260;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.395;QD=23.67;ReadPosRankSum=1.684;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3432,369,0 chrXI 624088 . G A 2990 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=21.06;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3023,321,0 chrXI 624190 . G A 3506.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.18;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3506,369,0 chrXI 624268 . C T 2991 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3024,321,0 chrXI 624424 . T C 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=138;Dels=0.00;FS=6.115;HaplotypeScore=9.7557;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=1.689;QD=23.90;ReadPosRankSum=2.874;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:3,133:138:99:3298,363,0 chrXI 624645 . A G 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=146;Dels=0.00;FS=6.801;HaplotypeScore=5.8322;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=-1.069;QD=20.32;ReadPosRankSum=2.399;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3000,324,0 chrXI 624652 . A G 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=145;Dels=0.00;FS=7.280;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;MQRankSum=-0.008;QD=19.28;ReadPosRankSum=2.348;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2828,303,0 chrXI 624661 . A G 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.468;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=0.025;QD=17.40;ReadPosRankSum=1.658;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2469,270,0 chrXI 624667 . A G 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=3.394;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=0.732;QD=15.97;ReadPosRankSum=1.683;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2317,252,0 chrXI 624837 . G C 3350.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=23.10;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3350,363,0 chrXI 624919 . C T 3352.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=19.2563;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=23.44;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3352,360,0 chrXI 625117 . A C 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.169;DP=176;Dels=0.00;FS=7.750;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.204;QD=20.00;ReadPosRankSum=2.379;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3520,384,0 chrXI 625172 . A G 5315.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.52;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:0,233:236:99:5315,606,0 chrXI 625684 . C T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.18;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3575,373,0 chrXI 627014 . C T 3870.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.50;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3870,414,0 chrXI 627031 . G A 4191.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.28;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4191,430,0 chrXI 627386 . C A 4362.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.0705;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.37;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4362,457,0 chrXI 627507 . A G 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.262;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=133.0458;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-0.787;QD=16.02;ReadPosRankSum=1.249;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2677,312,0 chrXI 627536 . C T 2828 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=18.13;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2861,309,0 chrXI 627879 . A T 2478 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.00;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2511,261,0 chrXI 628100 . T C 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=4.011;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.331;QD=24.43;ReadPosRankSum=1.707;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3323,357,0 chrXI 628202 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.19;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3527,367,0 chrXI 628397 . C G 3165 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.16;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3198,354,0 chrXI 628658 . C T 4771.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=24.72;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4771,502,0 chrXI 628847 . T C 3926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=187;Dels=0.00;FS=12.366;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;MQRankSum=-0.425;QD=20.99;ReadPosRankSum=2.963;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:3926,426,0 chrXI 628859 . C T 3503.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;QD=19.79;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:3503,369,0 chrXI 628874 . T C 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=3.306;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=40.50;MQ0=0;MQRankSum=-1.732;QD=18.49;ReadPosRankSum=1.711;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3120,342,0 chrXI 628888 . G A 3022 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=41.08;MQ0=0;QD=18.77;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3055,324,0 chrXI 628896 . C T 2884 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.23;MQ0=0;QD=16.87;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2917,303,0 chrXI 628913 . T A 2963 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=18.18;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2996,318,0 chrXI 629063 . T C 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=3.298;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-0.755;QD=22.51;ReadPosRankSum=1.710;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3556,399,0 chrXI 629129 . C A 3560.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=24.22;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3560,373,0 chrXI 629639 . C T 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.3574;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.708;QD=23.36;ReadPosRankSum=-0.818;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3410,375,0 chrXI 629750 . G A 4797.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.87;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4797,508,0 chrXI 629864 . T C 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=162;Dels=0.00;FS=6.102;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.261;QD=22.66;ReadPosRankSum=2.905;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:3,155:162:99:3671,405,0 chrXI 629976 . C T 3793.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.27;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3793,402,0 chrXI 630120 . T C 4779.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.0700;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.02;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4779,505,0 chrXI 630667 . G C 3328.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.65;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3328,360,0 chrXI 631029 . C G 2106 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7229;MLEAC=2;MLEAF=1.00;MQ=60.56;MQ0=0;QD=21.71;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2139,234,0 chrXI 631523 . T C 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.6420;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=0.643;QD=20.51;ReadPosRankSum=1.673;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3589,399,0 chrXI 631526 . A T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.8621;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=22.34;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3798,396,0 chrXI 631559 . C T 4102.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.3213;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=22.42;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4102,433,0 chrXI 632031 . T C 4431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=213;Dels=0.00;FS=8.679;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=0.134;QD=20.80;ReadPosRankSum=2.380;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:2,209:212:99:4431,477,0 chrXI 632039 . C T 4665.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.50;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4665,496,0 chrXI 632117 . T C 4588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.164;QD=22.60;ReadPosRankSum=1.698;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4588,519,0 chrXI 632408 . G A 8139.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=14.6446;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.66;SB=-4.050e+03 GT:AD:DP:GQ:PL 1/1:0,329:330:99:8139,871,0 chrXI 632654 . T C 4095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=7.579;HaplotypeScore=8.6412;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.439;QD=21.44;ReadPosRankSum=1.714;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4095,438,0 chrXI 632847 . G A 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.648;DP=47;Dels=0.00;FS=21.203;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=45.88;MQ0=0;MQRankSum=1.793;QD=1.04;ReadPosRankSum=-4.162;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,9:47:79:79,0,169 chrXI 632869 . A G 477 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=13.63;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:60:510,60,0 chrXI 632920 . C T 1268 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.25;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1301,135,0 chrXI 632929 . A G 1151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=5.441;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.681;QD=20.19;ReadPosRankSum=1.670;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:99:1184,132,0 chrXI 633194 . A T 2787 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.45;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2820,300,0 chrXI 633272 . A G 3707.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.2825;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3707,417,0 chrXI 633329 . G A 4148.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.44;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4148,433,0 chrXI 633545 . G A 3183 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=13.2480;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.40;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3216,345,0 chrXI 633641 . T A 3760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.133;QD=24.10;ReadPosRankSum=1.688;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3760,396,0 chrXI 633794 . A G 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=6.667;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.340;QD=24.01;ReadPosRankSum=2.339;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3250,351,0 chrXI 633878 . T C 4109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=170;Dels=0.00;FS=6.150;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.817;QD=24.17;ReadPosRankSum=2.363;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4109,444,0 chrXI 634397 . C T 3224.03 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=19.66;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3257,342,0 chrXI 634414 . A G 2895 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=43.05;MQ0=0;MQRankSum=-0.502;QD=17.13;ReadPosRankSum=1.712;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:2928,315,0 chrXI 634418 . G A 2936 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=17.27;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:2969,315,0 chrXI 634424 . A G 3015 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;MQRankSum=0.230;QD=17.43;ReadPosRankSum=1.672;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3048,324,0 chrXI 634474 . C T 3951.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=21.02;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3951,417,0 chrXI 634480 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=20.45;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3702,390,0 chrXI 635532 . A G 129.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.35;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:162,18,0 chrXI 635886 . T C 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.516;QD=23.33;ReadPosRankSum=2.417;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:2,148:153:99:3569,402,0 chrXI 636649 . C T 5625.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=17.9721;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.63;SB=-3.007e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5625,586,0 chrXI 636832 . G A 3902.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.4564;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.32;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:3902,408,0 chrXI 636838 . A C 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=211;Dels=0.00;FS=2.833;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=1.310;QD=17.93;ReadPosRankSum=2.391;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:2,207:211:99:3783,408,0 chrXI 637026 . T C 4086.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.89;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4086,438,0 chrXI 637305 . C T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.68;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3504,366,0 chrXI 637350 . T C 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=143;Dels=0.00;FS=5.772;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.207;QD=24.69;ReadPosRankSum=2.922;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:3,138:143:99:3530,378,0 chrXI 637392 . G C 3661.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.77;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3661,405,0 chrXI 638131 . C T 6583.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=8.0702;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.94;SB=-3.323e+03 GT:AD:DP:GQ:PL 1/1:0,274:275:99:6583,685,0 chrXI 638438 . C T 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.173;DP=110;Dels=0.01;FS=68.313;HaplotypeScore=10.7509;MLEAC=1;MLEAF=0.500;MQ=58.52;MQ0=0;MQRankSum=-0.616;QD=0.27;ReadPosRankSum=-5.361;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,21:109:60:60,0,760 chrXI 638618 . T G 2097 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.07;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,92:95:99:2130,234,0 chrXI 639032 . A T 3011 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=25.52;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3044,321,0 chrXI 639090 . C T 4656.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=24.90;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4656,493,0 chrXI 639099 . G A 4710.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.43;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4710,504,0 chrXI 639300 . A C 5016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-2.021;QD=23.44;ReadPosRankSum=2.426;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:2,210:214:99:5016,529,0 chrXI 639322 . C A 5109.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.65;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5109,538,0 chrXI 639414 . G C 3074 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=14.2715;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.94;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3107,333,0 chrXI 641098 . A G 2419 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2452,261,0 chrXI 641153 . G A 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.449;QD=22.78;ReadPosRankSum=0.424;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2288,237,0 chrXI 641654 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.4789;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.09;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3324,354,0 chrXI 641793 . C A 3030 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.9077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3063,321,0 chrXI 642681 . T C 1901 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=17.44;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1934,207,0 chrXI 643799 . G T 2245 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.14;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2278,240,0 chrXI 644029 . C T 2765 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.47;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2798,300,0 chrXI 644389 . A G 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=174;Dels=0.00;FS=3.579;HaplotypeScore=12.6225;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.496;QD=23.62;ReadPosRankSum=1.692;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:4110,444,0 chrXI 645006 . A T 2961 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.88;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2994,321,0 chrXI 645156 . C T 3085 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.48;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3118,321,0 chrXI 645733 . T C 2993 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.34;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3026,330,0 chrXI 646290 . C A 3746.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.98;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3746,402,0 chrXI 646526 . G A 4194.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4194,447,0 chrXI 647620 . G C 2362 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.056;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.0979;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=2;MQRankSum=-0.006;QD=11.75;ReadPosRankSum=1.197;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,195:201:99:2395,276,0 chrXI 647723 . A T 690.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.635;DP=276;Dels=0.00;FS=669.923;HaplotypeScore=37.8280;MLEAC=1;MLEAF=0.500;MQ=29.45;MQ0=17;MQRankSum=-2.756;QD=2.50;ReadPosRankSum=-2.754;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:172,104:276:99:720,0,3149 chrXI 656736 . G T 4694.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=17.4564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4694,493,0 chrXI 657654 . A T 2923 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.65;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2956,321,0 chrXI 657801 . G A 2771 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=23.29;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2804,297,0 chrXI 657812 . T C 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=7.309;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-0.229;QD=22.95;ReadPosRankSum=2.406;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2626,285,0 chrXI 657838 . A C 2482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=111;Dels=0.00;FS=2.894;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.698;QD=22.36;ReadPosRankSum=2.361;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2515,276,0 chrXI 657941 . T C 1515 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=21.04;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1548,180,0 chrXI 657972 . A G 1759 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=22.27;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1792,195,0 chrXI 657995 . A T 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;MQRankSum=0.073;QD=21.86;ReadPosRankSum=1.683;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1585,168,0 chrXI 658021 . C G 1434 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=21.09;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1467,159,0 chrXI 658026 . A T 1472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-0.752;QD=22.65;ReadPosRankSum=2.219;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1505,156,0 chrXI 658079 . G A 910 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.68;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:943,102,0 chrXI 658175 . C T 773 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=19.82;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:806,87,0 chrXI 658182 . C G 848 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=21.20;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:881,96,0 chrXI 658193 . A G 809 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=19.73;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:842,93,0 chrXI 658219 . A G 1011 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=19.44;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1044,114,0 chrXI 658347 . G A 2034 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.93;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2067,228,0 chrXI 658396 . C T 2299 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;QD=22.32;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2332,246,0 chrXI 658419 . C T 2326 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;QD=20.95;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2359,249,0 chrXI 658448 . C G 2138 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=18.27;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2171,237,0 chrXI 658489 . G A 2036 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;QD=16.83;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2069,222,0 chrXI 658515 . C G 1874 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=16.44;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:1907,213,0 chrXI 658527 . T A 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=119;Dels=0.00;FS=4.128;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;MQRankSum=0.422;QD=17.25;ReadPosRankSum=1.645;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2086,228,0 chrXI 658746 . A C 601 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.88;MQ0=2;QD=13.98;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,41:43:66:634,66,0 chrXI 659163 . C A 77.51 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=6.56;MQ0=99;QD=0.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:48,58:108:12:110,12,0 chrXI 660039 . G A 125.13 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.03;MQ0=69;QD=1.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:87:18:158,18,0 chrXI 660077 . A C 85.18 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516;DP=128;Dels=0.00;FS=3.590;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=9.94;MQ0=96;MQRankSum=-1.733;QD=0.67;ReadPosRankSum=-0.325;SB=-9.467e+01 GT:AD:DP:GQ:PL 0/1:1,127:128:11:115,0,11 chrXI 660530 . G A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.56;MQ0=8;QD=0.89;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,19:19:6:48,6,0 chrXI 660644 . A T 100.26 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.18;MQ0=11;QD=4.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:15:133,15,0 chrXI 660787 . C T 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.26;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:59,6,0 chrXI 660798 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=3;QD=3.80;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:54,6,0 chrXI 660936 . T G 240 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.71;MQ0=3;QD=17.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:33:273,33,0 chrXI 661005 . T C 247 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=7;QD=14.53;SB=-5.498e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:30:280,30,0 chrXI 661030 . G A 292 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.04;MQ0=3;QD=20.86;SB=-6.799e+01 GT:AD:DP:GQ:PL 1/1:2,12:14:33:325,33,0 chrXI 661088 . G A 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.69;MQ0=4;QD=3.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:6:58,6,0 chrXI 661093 . G C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.08;MQ0=4;QD=3.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:6:53,6,0 chrXI 661167 . C T 458 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.42;MQ0=5;QD=13.88;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:51:491,51,0 chrXI 661199 . A G 372 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.033;DP=33;Dels=0.00;FS=5.305;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=5;MQRankSum=-0.098;QD=11.27;ReadPosRankSum=1.937;SB=-2.162e+02 GT:AD:DP:GQ:PL 1/1:4,29:33:45:405,45,0 chrXI 661416 . G A 216.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.112;DP=31;Dels=0.00;FS=26.104;HaplotypeScore=7.1509;MLEAC=1;MLEAF=0.500;MQ=36.85;MQ0=3;MQRankSum=-0.255;QD=6.97;ReadPosRankSum=-4.109;SB=-6.498e-03 GT:AD:DP:GQ:PL 0/1:15,16:31:90:246,0,90 chrXI 661514 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.04;MQ0=9;QD=2.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,6:11:6:54,6,0 chrXI 663432 . T C 180.03 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=1;QD=20.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:24:213,24,0 chrXI 663751 . G A 2249.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.898;DP=221;Dels=0.00;FS=1.806;HaplotypeScore=4.1849;MLEAC=1;MLEAF=0.500;MQ=27.83;MQ0=11;MQRankSum=0.143;QD=10.18;ReadPosRankSum=0.173;SB=-7.500e+02 GT:AD:DP:GQ:PL 0/1:105,116:221:99:2279,0,1637 chrXI 663773 . C A 836.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.042;DP=148;Dels=0.00;FS=2.199;HaplotypeScore=7.3116;MLEAC=1;MLEAF=0.500;MQ=29.43;MQ0=13;MQRankSum=-0.792;QD=5.65;ReadPosRankSum=0.046;SB=-4.680e+02 GT:AD:DP:GQ:PL 0/1:81,67:148:99:866,0,1310 chrXI 665600 . A G 734 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.75;MQ0=1;QD=12.88;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:96:767,96,0 chrXI 665602 . G A 667 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.99;MQ0=1;QD=12.58;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:87:700,87,0 chrXI 665610 . A G 660 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.87;MQ0=1;QD=14.04;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:87:693,87,0 chrXI 665629 . A T 670 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.34;MQ0=0;QD=14.26;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:87:703,87,0 chrXI 665714 . A G 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.713;DP=79;Dels=0.00;FS=75.359;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.82;MQ0=6;MQRankSum=4.314;QD=0.30;ReadPosRankSum=-1.642;SB=0.011 GT:AD:DP:GQ:PL 0/1:53,26:79:54:54,0,397 chrXI 665715 . A T 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.614;DP=79;Dels=0.00;FS=75.359;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.82;MQ0=6;MQRankSum=4.314;QD=0.32;ReadPosRankSum=-1.976;SB=0.011 GT:AD:DP:GQ:PL 0/1:53,26:79:55:55,0,397 chrXI 665718 . C A 58.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.941;DP=82;Dels=0.00;FS=82.391;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.83;MQ0=6;MQRankSum=4.031;QD=0.71;ReadPosRankSum=-2.737;SB=0.028 GT:AD:DP:GQ:PL 0/1:53,29:82:88:88,0,394 chrXI 665725 . C T 77.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.879;DP=84;Dels=0.00;FS=83.820;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.44;MQ0=6;MQRankSum=3.155;QD=0.92;ReadPosRankSum=-4.891;SB=0.028 GT:AD:DP:GQ:PL 0/1:53,31:84:99:107,0,391 chrXI 665736 . C G 70.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.863;DP=85;Dels=0.00;FS=88.074;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.54;MQ0=6;MQRankSum=1.443;QD=0.82;ReadPosRankSum=-6.287;SB=-2.189e-03 GT:AD:DP:GQ:PL 0/1:53,32:85:99:100,0,391 chrXI 665737 . T C 71.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753;DP=85;Dels=0.00;FS=88.074;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.54;MQ0=6;MQRankSum=1.443;QD=0.84;ReadPosRankSum=-6.157;SB=-2.189e-03 GT:AD:DP:GQ:PL 0/1:53,32:85:99:101,0,391 chrXI 665739 . T C 72.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;DP=85;Dels=0.00;FS=88.074;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.54;MQ0=6;MQRankSum=1.443;QD=0.85;ReadPosRankSum=-5.548;SB=-2.189e-03 GT:AD:DP:GQ:PL 0/1:53,32:85:99:102,0,391 chrXI 665777 . G T 71.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;DP=61;Dels=0.00;FS=73.093;HaplotypeScore=7.2336;MLEAC=1;MLEAF=0.500;MQ=15.90;MQ0=2;MQRankSum=-0.956;QD=1.16;ReadPosRankSum=5.422;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:27,31:61:99:101,0,197 chrXI 665791 . T C 114.13 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.09;MQ0=0;QD=4.57;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:18:147,18,0 chrXI 665793 . G T 118.13 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.09;MQ0=0;QD=4.73;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:18:151,18,0 chrXI 665798 . G C 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.09;MQ0=0;QD=1.74;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:9:72,9,0 chrXI 665927 . C T 140.03 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=4.9656;MLEAC=2;MLEAF=1.00;MQ=17.91;MQ0=2;QD=5.19;SB=-4.089e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:24:173,24,0 chrXI 665958 . T C 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.460;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=23.7840;MLEAC=1;MLEAF=0.500;MQ=16.25;MQ0=3;MQRankSum=1.110;QD=3.00;ReadPosRankSum=4.004;SB=-6.554e-03 GT:AD:DP:GQ:PL 0/1:32,10:42:48:156,0,48 chrXI 665976 . G T 249 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=12.7599;MLEAC=2;MLEAF=1.00;MQ=15.37;MQ0=3;MQRankSum=0.057;QD=6.38;ReadPosRankSum=2.805;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:5,34:39:39:282,39,0 chrXI 665979 . T A 227.08 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.383;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=12.6158;MLEAC=2;MLEAF=1.00;MQ=15.02;MQ0=6;MQRankSum=0.098;QD=4.54;ReadPosRankSum=4.495;SB=-2.209e+01 GT:AD:DP:GQ:PL 1/1:15,35:50:20:260,20,0 chrXI 665985 . A G 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.084;DP=59;Dels=0.00;FS=9.566;HaplotypeScore=13.4045;MLEAC=1;MLEAF=0.500;MQ=15.94;MQ0=10;MQRankSum=0.619;QD=0.53;ReadPosRankSum=0.083;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,29:59:61:61,0,279 chrXI 665996 . A G 486 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.253;DP=72;Dels=0.00;FS=10.306;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=16.87;MQ0=13;MQRankSum=0.179;QD=6.75;ReadPosRankSum=-3.129;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:16,56:72:50:519,50,0 chrXI 666015 . T C 412.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.941;DP=99;Dels=0.00;FS=58.424;HaplotypeScore=13.0789;MLEAC=1;MLEAF=0.500;MQ=18.65;MQ0=29;MQRankSum=1.635;QD=4.16;ReadPosRankSum=-1.035;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:62,37:99:99:442,0,159 chrXI 666022 . T C 532.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.157;DP=112;Dels=0.00;FS=59.625;HaplotypeScore=15.9314;MLEAC=1;MLEAF=0.500;MQ=19.52;MQ0=32;MQRankSum=1.720;QD=4.75;ReadPosRankSum=-1.074;SB=-1.840e+02 GT:AD:DP:GQ:PL 0/1:66,46:112:99:562,0,168 chrXI 666046 . T C 840.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.163;DP=123;Dels=0.00;FS=13.694;HaplotypeScore=22.0022;MLEAC=1;MLEAF=0.500;MQ=20.01;MQ0=36;MQRankSum=2.894;QD=6.83;ReadPosRankSum=0.483;SB=-4.620e+02 GT:AD:DP:GQ:PL 0/1:64,59:123:99:870,0,186 chrXI 666075 . G C 222.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.294;DP=160;Dels=0.00;FS=25.948;HaplotypeScore=45.6063;MLEAC=1;MLEAF=0.500;MQ=22.13;MQ0=37;MQRankSum=-1.538;QD=1.39;ReadPosRankSum=-0.369;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:120,35:160:99:252,0,1046 chrXI 666106 . T C 321.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.363;DP=204;Dels=0.00;FS=53.232;HaplotypeScore=109.3221;MLEAC=1;MLEAF=0.500;MQ=23.04;MQ0=20;MQRankSum=7.735;QD=1.57;ReadPosRankSum=-1.372;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:127,76:204:99:351,0,984 chrXI 666111 . G A 453.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.876;DP=202;Dels=0.00;FS=114.020;HaplotypeScore=134.1836;MLEAC=1;MLEAF=0.500;MQ=24.02;MQ0=9;MQRankSum=3.854;QD=2.24;ReadPosRankSum=-1.755;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,131:202:99:483,0,904 chrXI 666116 . A C 212.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.845;DP=220;Dels=0.00;FS=4.257;HaplotypeScore=155.7279;MLEAC=1;MLEAF=0.500;MQ=24.28;MQ0=9;MQRankSum=-8.246;QD=0.96;ReadPosRankSum=1.135;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:156,63:220:99:242,0,1283 chrXI 666117 . A G,T 1722.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.107;DP=217;Dels=0.00;FS=21.445;HaplotypeScore=79.0378;MLEAC=1,1;MLEAF=0.500,0.500;MQ=24.23;MQ0=9;MQRankSum=-0.868;QD=7.94;ReadPosRankSum=2.272;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/2:2,67,148:217:99:1782,1379,1328,402,0,220 chrXI 666123 . C G 148.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.978;DP=232;Dels=0.00;FS=43.131;HaplotypeScore=85.0797;MLEAC=1;MLEAF=0.500;MQ=24.62;MQ0=9;MQRankSum=-4.524;QD=0.64;ReadPosRankSum=-1.887;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:207,24:232:99:178,0,1367 chrXI 666130 . G A 784.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.187;DP=233;Dels=0.00;FS=110.318;HaplotypeScore=23.5348;MLEAC=1;MLEAF=0.500;MQ=24.88;MQ0=8;MQRankSum=10.526;QD=3.36;ReadPosRankSum=-2.239;SB=-4.886e+00 GT:AD:DP:GQ:PL 0/1:86,147:233:99:814,0,474 chrXI 666184 . T C 112.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;DP=294;Dels=0.00;FS=103.376;HaplotypeScore=29.2957;MLEAC=1;MLEAF=0.500;MQ=22.08;MQ0=10;MQRankSum=-0.995;QD=0.38;ReadPosRankSum=1.475;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:276,18:294:99:142,0,1087 chrXI 666186 . G A 181.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.444;DP=291;Dels=0.00;FS=257.479;HaplotypeScore=27.4100;MLEAC=1;MLEAF=0.500;MQ=22.00;MQ0=9;MQRankSum=-3.586;QD=0.62;ReadPosRankSum=1.646;SB=-6.246e-03 GT:AD:DP:GQ:PL 0/1:245,46:291:99:211,0,1010 chrXI 666198 . A G 1177 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=278;Dels=0.00;FS=17.334;HaplotypeScore=211.2851;MLEAC=2;MLEAF=1.00;MQ=20.57;MQ0=9;MQRankSum=-0.023;QD=4.23;ReadPosRankSum=2.294;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:2,276:278:99:1210,141,0 chrXI 666216 . T G 337.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.453;DP=282;Dels=0.00;FS=105.413;HaplotypeScore=45.8660;MLEAC=1;MLEAF=0.500;MQ=18.76;MQ0=21;MQRankSum=0.666;QD=1.20;ReadPosRankSum=-0.711;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:232,50:282:99:367,0,326 chrXI 666221 . G A 406.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.983;DP=281;Dels=0.00;FS=47.396;HaplotypeScore=55.5316;MLEAC=1;MLEAF=0.500;MQ=18.26;MQ0=24;MQRankSum=0.931;QD=1.44;ReadPosRankSum=-2.387;SB=-1.470e+02 GT:AD:DP:GQ:PL 0/1:223,58:281:99:436,0,235 chrXI 666343 . T A 5210.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.352;DP=615;Dels=0.00;FS=146.839;HaplotypeScore=76.5626;MLEAC=1;MLEAF=0.500;MQ=36.91;MQ0=1;MQRankSum=-7.723;QD=8.47;ReadPosRankSum=2.463;SB=-2.831e+03 GT:AD:DP:GQ:PL 0/1:276,339:615:99:5210,0,4186 chrXI 666348 . A G 4973.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;DP=628;Dels=0.00;FS=211.428;HaplotypeScore=78.7495;MLEAC=1;MLEAF=0.500;MQ=36.26;MQ0=1;MQRankSum=-9.266;QD=7.92;ReadPosRankSum=1.990;SB=-2.506e+03 GT:AD:DP:GQ:PL 0/1:270,351:628:99:4973,0,4077 chrXI 666535 . A G 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.487;DP=525;Dels=0.00;FS=47.354;HaplotypeScore=97.8711;MLEAC=1;MLEAF=0.500;MQ=38.30;MQ0=0;MQRankSum=-9.766;QD=0.02;ReadPosRankSum=0.907;SB=-2.760e+02 GT:AD:DP:GQ:PL 0/1:339,186:525:41:41,0,6365 chrXI 666565 . G T 514.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.983;DP=552;Dels=0.00;FS=48.875;HaplotypeScore=374.0434;MLEAC=1;MLEAF=0.500;MQ=35.83;MQ0=0;MQRankSum=-7.035;QD=0.93;ReadPosRankSum=1.065;SB=-3.280e+02 GT:AD:DP:GQ:PL 0/1:323,222:552:99:544,0,5512 chrXI 666566 . T G 507.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;DP=546;Dels=0.00;FS=45.431;HaplotypeScore=388.4949;MLEAC=1;MLEAF=0.500;MQ=35.73;MQ0=0;MQRankSum=-9.034;QD=0.93;ReadPosRankSum=0.725;SB=-3.020e+02 GT:AD:DP:GQ:PL 0/1:316,222:545:99:537,0,5589 chrXI 666570 . A G 562.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.509;DP=562;Dels=0.00;FS=151.449;HaplotypeScore=129.5544;MLEAC=1;MLEAF=0.500;MQ=35.01;MQ0=0;MQRankSum=-8.340;QD=1.00;ReadPosRankSum=0.374;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:353,209:562:99:592,0,5724 chrXI 666590 . G T 502.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.723;DP=487;Dels=0.00;FS=131.369;HaplotypeScore=239.2657;MLEAC=1;MLEAF=0.500;MQ=32.07;MQ0=0;MQRankSum=-2.209;QD=1.03;ReadPosRankSum=1.202;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:282,195:487:99:532,0,4263 chrXI 666597 . A T 562.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.818;DP=430;Dels=0.01;FS=122.749;HaplotypeScore=706.7552;MLEAC=1;MLEAF=0.500;MQ=30.74;MQ0=1;MQRankSum=-3.131;QD=1.31;ReadPosRankSum=3.309;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:267,158:426:99:592,0,3671 chrXI 666608 . T A 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.733;DP=424;Dels=0.02;FS=76.966;HaplotypeScore=1084.9747;MLEAC=1;MLEAF=0.500;MQ=27.55;MQ0=4;MQRankSum=5.487;QD=0.14;ReadPosRankSum=6.055;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:295,122:417:90:90,0,149 chrXI 666675 . G A 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.459;DP=228;Dels=0.02;FS=35.869;HaplotypeScore=261.8625;MLEAC=1;MLEAF=0.500;MQ=27.57;MQ0=5;MQRankSum=2.154;QD=0.24;ReadPosRankSum=-1.341;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:182,41:223:84:84,0,723 chrXI 666789 . T G 341.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;DP=245;Dels=0.03;FS=10.758;HaplotypeScore=252.5893;MLEAC=1;MLEAF=0.500;MQ=21.91;MQ0=21;MQRankSum=1.135;QD=1.39;ReadPosRankSum=1.153;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:146,88:237:99:371,0,449 chrXI 666812 . T G 136.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;DP=124;Dels=0.02;FS=0.000;HaplotypeScore=53.6760;MLEAC=1;MLEAF=0.500;MQ=19.06;MQ0=15;MQRankSum=0.152;QD=1.10;ReadPosRankSum=0.326;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,32:121:99:166,0,596 chrXI 666814 . T G 116.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.161;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=48.3775;MLEAC=1;MLEAF=0.500;MQ=18.81;MQ0=13;MQRankSum=-0.362;QD=1.09;ReadPosRankSum=3.096;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,26:106:99:146,0,569 chrXII 89 . C T 604.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.037;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=16.2195;MLEAC=1;MLEAF=0.500;MQ=33.58;MQ0=9;MQRankSum=-0.524;QD=6.79;ReadPosRankSum=5.538;SB=-2.000e+02 GT:AD:DP:GQ:PL 0/1:43,46:89:99:634,0,503 chrXII 92 . C T 572.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;DP=91;Dels=0.00;FS=0.936;HaplotypeScore=6.3445;MLEAC=1;MLEAF=0.500;MQ=33.20;MQ0=11;MQRankSum=1.203;QD=6.29;ReadPosRankSum=5.814;SB=-2.160e+02 GT:AD:DP:GQ:PL 0/1:44,47:91:99:602,0,605 chrXII 156 . C T 339.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.886;DP=103;Dels=0.00;FS=8.272;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=21.43;MQ0=58;MQRankSum=1.137;QD=3.29;ReadPosRankSum=3.246;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:76,26:103:99:369,0,336 chrXII 305 . A G 425.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.936;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=1;MLEAF=0.500;MQ=22.66;MQ0=27;MQRankSum=-1.476;QD=6.07;ReadPosRankSum=2.748;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,45:70:99:455,0,203 chrXII 329 . C G 73.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=14.2326;MLEAC=1;MLEAF=0.500;MQ=20.81;MQ0=43;MQRankSum=1.349;QD=0.79;ReadPosRankSum=0.172;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,18:91:99:103,0,599 chrXII 376 . G A 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.806;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.2656;MLEAC=1;MLEAF=0.500;MQ=14.13;MQ0=76;MQRankSum=-0.070;QD=0.28;ReadPosRankSum=0.821;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,40:106:60:60,0,328 chrXII 5430 . T C 186.03 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.28;MQ0=9;QD=9.30;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:1,19:20:24:219,24,0 chrXII 5463 . A G 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.359;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.78;MQ0=12;MQRankSum=0.466;QD=3.61;ReadPosRankSum=-0.466;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:15,8:23:63:113,0,63 chrXII 5646 . C A 174.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;DP=56;Dels=0.00;FS=43.543;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.54;MQ0=35;MQRankSum=1.847;QD=3.11;ReadPosRankSum=2.281;SB=-6.015e+00 GT:AD:DP:GQ:PL 0/1:43,13:56:99:204,0,169 chrXII 5647 . A G 167.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;DP=55;Dels=0.00;FS=43.543;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.72;MQ0=34;MQRankSum=2.136;QD=3.04;ReadPosRankSum=2.209;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:42,13:55:99:197,0,172 chrXII 5657 . A G 171.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.485;DP=52;Dels=0.00;FS=43.543;HaplotypeScore=31.8485;MLEAC=1;MLEAF=0.500;MQ=20.28;MQ0=31;MQRankSum=2.643;QD=3.29;ReadPosRankSum=0.543;SB=-5.015e+00 GT:AD:DP:GQ:PL 0/1:39,13:52:99:201,0,168 chrXII 5741 . T C 493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.333;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;MQRankSum=-0.400;QD=18.96;ReadPosRankSum=1.333;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:1,25:26:30:526,30,0 chrXII 5756 . C T 535 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.41;MQ0=0;QD=16.72;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:60:568,60,0 chrXII 5803 . C T 358.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.908;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;MQRankSum=-1.239;QD=16.28;ReadPosRankSum=-0.413;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,20:22:18:391,18,0 chrXII 5807 . C G 293 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.42;MQ0=0;QD=17.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:36:326,36,0 chrXII 10948 . C A 58.97 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.42;MQ0=23;QD=1.79;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:16,16:33:9:91,9,0 chrXII 10965 . T C 106.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.48;MQ0=6;MQRankSum=-1.203;QD=5.59;ReadPosRankSum=1.470;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:1,18:19:15:139,15,0 chrXII 10994 . C A 95.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.282;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=5.4859;MLEAC=1;MLEAF=0.500;MQ=15.72;MQ0=23;MQRankSum=1.606;QD=2.64;ReadPosRankSum=1.775;SB=-1.642e-01 GT:AD:DP:GQ:PL 0/1:16,20:36:10:125,0,10 chrXII 11364 . T C 15.21 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;DP=66;Dels=0.02;FS=43.323;HaplotypeScore=109.5329;MLEAC=1;MLEAF=0.500;MQ=23.38;MQ0=0;MQRankSum=3.830;QD=0.23;ReadPosRankSum=-0.877;SB=-7.465e-02 GT:AD:DP:GQ:PL 0/1:30,35:65:15:45,0,15 chrXII 11371 . A T 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.753;DP=79;Dels=0.00;FS=62.404;HaplotypeScore=74.8525;MLEAC=2;MLEAF=1.00;MQ=21.67;MQ0=0;MQRankSum=5.204;QD=0.57;ReadPosRankSum=-1.467;SB=2.03 GT:AD:DP:GQ:PL 1/1:44,35:79:9:77,9,0 chrXII 11379 . A T 20.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;DP=83;Dels=0.00;FS=1.797;HaplotypeScore=57.2657;MLEAC=1;MLEAF=0.500;MQ=22.64;MQ0=0;MQRankSum=1.840;QD=0.24;ReadPosRankSum=0.510;SB=-2.002e+01 GT:AD:DP:GQ:PL 0/1:70,6:83:21:50,0,21 chrXII 11388 . T A 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.959;DP=98;Dels=0.01;FS=10.331;HaplotypeScore=79.1141;MLEAC=1;MLEAF=0.500;MQ=22.12;MQ0=2;MQRankSum=3.140;QD=0.11;ReadPosRankSum=1.195;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,7:97:40:40,0,87 chrXII 11392 . G A,C 56.52 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.041;DP=91;Dels=0.01;FS=15.539;HaplotypeScore=38.8618;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.54;MQ0=3;MQRankSum=2.115;QD=0.62;ReadPosRankSum=-2.326;SB=-5.352e+01 GT:AD:DP:GQ:PL 1/2:66,11,11:90:37:116,46,37,70,0,64 chrXII 11399 . C T 168.77 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.129;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=62.5613;MLEAC=1;MLEAF=0.500;MQ=22.20;MQ0=3;MQRankSum=2.515;QD=1.67;ReadPosRankSum=-4.663;SB=-2.938e+02 GT:AD:DP:GQ:PL 0/1:55,45:101:0:197,0,0 chrXII 11403 . C T 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.141;DP=123;Dels=0.00;FS=25.486;HaplotypeScore=40.6211;MLEAC=1;MLEAF=0.500;MQ=22.75;MQ0=3;MQRankSum=3.573;QD=0.12;ReadPosRankSum=1.060;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,9:123:44:44,0,196 chrXII 11404 . A C 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;DP=125;Dels=0.00;FS=28.863;HaplotypeScore=43.4878;MLEAC=1;MLEAF=0.500;MQ=22.76;MQ0=3;MQRankSum=3.195;QD=0.09;ReadPosRankSum=0.869;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,10:125:41:41,0,206 chrXII 11448 . T C 468.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.819;DP=181;Dels=0.00;FS=4.832;HaplotypeScore=19.2492;MLEAC=1;MLEAF=0.500;MQ=24.11;MQ0=8;MQRankSum=4.850;QD=2.59;ReadPosRankSum=3.540;SB=-2.780e+02 GT:AD:DP:GQ:PL 0/1:48,131:181:99:498,0,301 chrXII 11453 . C T 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.063;DP=171;Dels=0.00;FS=12.560;HaplotypeScore=16.1259;MLEAC=1;MLEAF=0.500;MQ=24.18;MQ0=9;MQRankSum=4.441;QD=0.07;ReadPosRankSum=5.086;SB=-2.289e+02 GT:AD:DP:GQ:PL 0/1:47,124:171:42:42,0,340 chrXII 11456 . C T 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.641;DP=165;Dels=0.00;FS=8.933;HaplotypeScore=11.3193;MLEAC=1;MLEAF=0.500;MQ=24.52;MQ0=9;MQRankSum=3.560;QD=0.20;ReadPosRankSum=5.004;SB=-2.200e+02 GT:AD:DP:GQ:PL 0/1:42,123:165:63:63,0,344 chrXII 11457 . C T 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.755;DP=167;Dels=0.00;FS=11.459;HaplotypeScore=10.5306;MLEAC=1;MLEAF=0.500;MQ=24.66;MQ0=9;MQRankSum=3.083;QD=0.31;ReadPosRankSum=4.767;SB=-1.830e+02 GT:AD:DP:GQ:PL 0/1:41,125:167:82:82,0,339 chrXII 11458 . G A 789 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.754;DP=167;Dels=0.00;FS=49.395;HaplotypeScore=12.2604;MLEAC=2;MLEAF=1.00;MQ=24.76;MQ0=9;MQRankSum=-0.625;QD=4.72;ReadPosRankSum=1.085;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:5,161:167:76:822,76,0 chrXII 11472 . C T 364.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.468;DP=277;Dels=0.00;FS=24.182;HaplotypeScore=36.4975;MLEAC=1;MLEAF=0.500;MQ=24.39;MQ0=19;MQRankSum=4.716;QD=1.31;ReadPosRankSum=2.489;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:86,191:277:99:394,0,527 chrXII 11497 . T C 402.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.645;DP=329;Dels=0.00;FS=1.632;HaplotypeScore=541.7888;MLEAC=1;MLEAF=0.500;MQ=24.99;MQ0=18;MQRankSum=4.545;QD=1.22;ReadPosRankSum=0.910;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:175,152:328:99:432,0,420 chrXII 11503 . C T 389.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.898;DP=322;Dels=0.00;FS=6.501;HaplotypeScore=264.3250;MLEAC=1;MLEAF=0.500;MQ=24.78;MQ0=20;MQRankSum=5.951;QD=1.21;ReadPosRankSum=-1.880;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:182,139:321:99:419,0,573 chrXII 11506 . T C 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.695;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=246.3424;MLEAC=1;MLEAF=0.500;MQ=24.85;MQ0=20;MQRankSum=-1.829;QD=0.17;ReadPosRankSum=1.016;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:222,102:324:86:86,0,928 chrXII 11510 . C T 75.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.948;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=248.0535;MLEAC=1;MLEAF=0.500;MQ=24.79;MQ0=20;MQRankSum=-0.052;QD=0.24;ReadPosRankSum=1.773;SB=-4.601e+01 GT:AD:DP:GQ:PL 0/1:217,100:318:99:105,0,794 chrXII 11530 . T C 219.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.042;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=107.6987;MLEAC=1;MLEAF=0.500;MQ=23.65;MQ0=36;MQRankSum=-0.578;QD=0.74;ReadPosRankSum=0.304;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:236,57:294:99:249,0,370 chrXII 11536 . A G 159.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.673;DP=281;Dels=0.00;FS=2.318;HaplotypeScore=159.6996;MLEAC=1;MLEAF=0.500;MQ=23.51;MQ0=36;MQRankSum=-0.294;QD=0.57;ReadPosRankSum=1.075;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:228,53:281:99:189,0,406 chrXII 11537 . T A 196.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.252;DP=273;Dels=0.00;FS=4.213;HaplotypeScore=161.7071;MLEAC=1;MLEAF=0.500;MQ=23.37;MQ0=36;MQRankSum=5.896;QD=0.72;ReadPosRankSum=0.178;SB=-7.301e+01 GT:AD:DP:GQ:PL 0/1:158,115:273:99:226,0,384 chrXII 11545 . T C 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.654;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=324.7515;MLEAC=1;MLEAF=0.500;MQ=23.26;MQ0=31;MQRankSum=-2.561;QD=0.22;ReadPosRankSum=-0.516;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:158,79:237:82:82,0,477 chrXII 11547 . C T 131.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.566;DP=223;Dels=0.00;FS=2.205;HaplotypeScore=280.3646;MLEAC=1;MLEAF=0.500;MQ=23.30;MQ0=31;MQRankSum=6.250;QD=0.59;ReadPosRankSum=2.715;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:136,86:223:99:161,0,403 chrXII 11551 . A G 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;DP=201;Dels=0.00;FS=2.583;HaplotypeScore=258.9339;MLEAC=1;MLEAF=0.500;MQ=23.97;MQ0=27;MQRankSum=0.790;QD=0.22;ReadPosRankSum=-2.030;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,59:200:74:74,0,345 chrXII 11563 . A G 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;DP=132;Dels=0.00;FS=8.086;HaplotypeScore=105.6060;MLEAC=1;MLEAF=0.500;MQ=23.92;MQ0=24;MQRankSum=1.409;QD=0.43;ReadPosRankSum=-6.652;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,44:132:87:87,0,254 chrXII 11569 . G C 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.079;DP=61;Dels=0.03;FS=5.261;HaplotypeScore=28.4860;MLEAC=1;MLEAF=0.500;MQ=20.91;MQ0=22;MQRankSum=0.611;QD=1.02;ReadPosRankSum=0.807;SB=-2.302e+01 GT:AD:DP:GQ:PL 0/1:4,55:59:25:92,0,25 chrXII 11572 . G C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=18.5934;MLEAC=2;MLEAF=1.00;MQ=22.18;MQ0=22;QD=0.17;SB=-8.377e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:6:43,6,0 chrXII 11618 . C T 35.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.78;MQ0=20;QD=0.60;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:3,57:60:9:68,9,0 chrXII 11619 . T A 124.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=66;Dels=0.00;FS=4.323;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.32;MQ0=20;MQRankSum=-0.678;QD=1.88;ReadPosRankSum=1.431;SB=-4.381e+02 GT:AD:DP:GQ:PL 1/1:4,62:66:21:157,21,0 chrXII 11626 . G A 450.27 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;DP=102;Dels=0.00;FS=9.936;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=20.62;MQ0=20;MQRankSum=3.165;QD=4.41;ReadPosRankSum=-1.137;SB=-4.093e+02 GT:AD:DP:GQ:PL 0/1:37,65:102:9:480,0,9 chrXII 11652 . T C 2105 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.376;DP=255;Dels=0.00;FS=33.876;HaplotypeScore=17.9258;MLEAC=2;MLEAF=1.00;MQ=24.31;MQ0=21;MQRankSum=3.188;QD=8.25;ReadPosRankSum=-1.846;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:47,208:255:61:2138,61,0 chrXII 11712 . G C 235.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.172;DP=453;Dels=0.00;FS=25.953;HaplotypeScore=53.5301;MLEAC=1;MLEAF=0.500;MQ=24.42;MQ0=44;MQRankSum=-1.196;QD=0.52;ReadPosRankSum=3.783;SB=-1.410e+02 GT:AD:DP:GQ:PL 0/1:371,79:453:99:265,0,3555 chrXII 11717 . T C 525.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.926;DP=434;Dels=0.00;FS=11.261;HaplotypeScore=66.7735;MLEAC=1;MLEAF=0.500;MQ=24.60;MQ0=46;MQRankSum=-4.354;QD=1.21;ReadPosRankSum=5.715;SB=-1.990e+02 GT:AD:DP:GQ:PL 0/1:326,104:434:99:555,0,3027 chrXII 11846 . T C 271 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.38;MQ0=13;QD=5.53;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,48:49:33:304,33,0 chrXII 11874 . T C 105.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;DP=40;Dels=0.00;FS=11.137;HaplotypeScore=9.1090;MLEAC=1;MLEAF=0.500;MQ=25.41;MQ0=6;MQRankSum=-0.897;QD=2.63;ReadPosRankSum=4.564;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,14:40:99:135,0,104 chrXII 11878 . T C 101.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;DP=37;Dels=0.00;FS=8.900;HaplotypeScore=7.3871;MLEAC=1;MLEAF=0.500;MQ=24.35;MQ0=5;MQRankSum=-0.947;QD=2.73;ReadPosRankSum=4.433;SB=-6.521e-03 GT:AD:DP:GQ:PL 0/1:23,12:37:61:131,0,61 chrXII 11879 . C G 111.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.058;DP=37;Dels=0.00;FS=9.040;HaplotypeScore=5.8098;MLEAC=1;MLEAF=0.500;MQ=23.49;MQ0=5;MQRankSum=0.188;QD=3.00;ReadPosRankSum=4.328;SB=-6.523e-03 GT:AD:DP:GQ:PL 0/1:21,12:37:58:141,0,58 chrXII 16745 . G A 2561 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.9918;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.65;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2594,267,0 chrXII 17299 . A G 3706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.3815;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=2.211;QD=22.06;ReadPosRankSum=2.621;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3706,396,0 chrXII 18460 . C T 3829.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3564;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.35;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3829,391,0 chrXII 18491 . G A 3956.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.7456;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.74;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3956,420,0 chrXII 18699 . T C 3640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.547;QD=23.95;ReadPosRankSum=1.687;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3640,390,0 chrXII 19080 . C T 6565.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=13.6136;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.41;SB=-2.972e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:6565,685,0 chrXII 19191 . T A 5752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=255;Dels=0.00;FS=7.781;HaplotypeScore=24.6563;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-2.092;QD=22.56;ReadPosRankSum=2.392;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:2,252:255:99:5752,613,0 chrXII 19236 . A G 4852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=18.4047;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.399;QD=21.19;ReadPosRankSum=1.687;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:4852,528,0 chrXII 19419 . A G 4629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.694;DP=200;Dels=0.00;FS=6.039;HaplotypeScore=12.5495;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.874;QD=23.15;ReadPosRankSum=2.965;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:4629,493,0 chrXII 19593 . C T 2380 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=22.24;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2413,252,0 chrXII 19608 . G C 2404 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=23.12;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2437,255,0 chrXII 19788 . A G 1173 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=22.56;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1206,129,0 chrXII 19819 . T G 1532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=0.974;QD=23.94;ReadPosRankSum=1.678;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1565,168,0 chrXII 19832 . C T 1575 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=22.50;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1608,171,0 chrXII 19877 . C T 1292 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;QD=23.93;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1325,147,0 chrXII 19889 . G A 1061 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.83;MQ0=0;QD=23.07;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1094,123,0 chrXII 19910 . A T 1027 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.9726;MLEAC=2;MLEAF=1.00;MQ=34.71;MQ0=0;QD=21.85;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1060,123,0 chrXII 19941 . A C 749 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=17.83;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:782,81,0 chrXII 20003 . G A 2715 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=23.21;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2748,279,0 chrXII 20019 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=21.19;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3085,330,0 chrXII 20041 . A C 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.871;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;MQRankSum=-0.660;QD=17.89;ReadPosRankSum=1.682;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2537,267,0 chrXII 20097 . C T 1751 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=13.57;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1784,195,0 chrXII 20103 . G C 1236 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=10.94;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1269,147,0 chrXII 20108 . G C 1330 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=0;QD=12.91;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1363,156,0 chrXII 20109 . C T 1335 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=0;QD=12.96;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1368,156,0 chrXII 20114 . C T 1275 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=80.2202;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;QD=11.81;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1308,150,0 chrXII 20157 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.82;MQ0=0;QD=15.61;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1797,192,0 chrXII 20163 . A G 1651 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=0;QD=13.10;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:1684,183,0 chrXII 20200 . A G 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=3.610;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;MQRankSum=0.503;QD=18.29;ReadPosRankSum=1.713;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3402,372,0 chrXII 20228 . G T 3644.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;QD=17.69;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:3644,387,0 chrXII 20235 . G A 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.983;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=0;MQRankSum=-0.733;QD=17.74;ReadPosRankSum=-1.033;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:3690,374,0 chrXII 20241 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=18.43;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3742,399,0 chrXII 20301 . G A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=43.90;MQ0=0;QD=20.50;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3833,405,0 chrXII 20344 . T A 4454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;MQRankSum=-0.279;QD=25.60;ReadPosRankSum=1.712;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4454,463,0 chrXII 20366 . T C 4970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=219;Dels=0.00;FS=2.574;HaplotypeScore=12.2481;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-0.949;QD=22.69;ReadPosRankSum=2.949;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:3,215:219:99:4970,540,0 chrXII 20402 . A G 5164.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=4.3183;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;QD=22.26;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5164,570,0 chrXII 20423 . C G 4328.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;QD=20.61;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4328,474,0 chrXII 20452 . G A 4223.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=21.33;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4223,456,0 chrXII 20602 . T C 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=193;Dels=0.00;FS=4.980;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;MQRankSum=-1.696;QD=20.09;ReadPosRankSum=1.479;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:3877,423,0 chrXII 20619 . A G 3663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;MQRankSum=-0.066;QD=19.59;ReadPosRankSum=1.713;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:3663,402,0 chrXII 20630 . C A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=20.18;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3450,360,0 chrXII 20686 . C T 3051 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=23.29;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3084,330,0 chrXII 20945 . A C 1491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-1.572;QD=22.94;ReadPosRankSum=1.679;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1524,162,0 chrXII 20990 . C A 1759 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.69;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1792,186,0 chrXII 21053 . T A 2183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=0.106;QD=22.28;ReadPosRankSum=1.697;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2216,231,0 chrXII 21252 . T C 4758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.3442;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-1.237;QD=22.55;ReadPosRankSum=1.716;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:4758,522,0 chrXII 21384 . T C 5475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.106;DP=256;Dels=0.00;FS=10.582;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.720;QD=21.39;ReadPosRankSum=4.146;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:6,246:256:99:5475,574,0 chrXII 21405 . A G 5278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.388;QD=20.54;ReadPosRankSum=2.334;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:2,254:257:99:5278,562,0 chrXII 21407 . G A 5469.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=2.3656;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=21.36;SB=-2.869e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5469,565,0 chrXII 21693 . C G 6308.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.77;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:6308,676,0 chrXII 21830 . T C 4145.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=21.15;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4145,447,0 chrXII 21837 . C A 4078.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.6332;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=20.91;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4078,432,0 chrXII 21869 . A G 4673.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=21.94;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4673,501,0 chrXII 21957 . C T 4244.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=20.80;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4244,453,0 chrXII 21959 . C T 4388.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.72;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4388,454,0 chrXII 22019 . T C 2454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=190;Dels=0.00;FS=6.137;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=42.59;MQ0=0;MQRankSum=-1.404;QD=12.92;ReadPosRankSum=2.423;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:2,186:190:99:2487,267,0 chrXII 22028 . A G 2597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=204;Dels=0.00;FS=10.404;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;MQRankSum=-2.115;QD=12.73;ReadPosRankSum=2.965;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:3,198:204:99:2630,279,0 chrXII 22049 . T C 3336.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;QD=15.74;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:3336,360,0 chrXII 22074 . T C 2655 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=205;Dels=0.00;FS=3.005;HaplotypeScore=5.2751;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;MQRankSum=-1.330;QD=12.95;ReadPosRankSum=2.389;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:2688,285,0 chrXII 22078 . A G 2708 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=206;Dels=0.00;FS=10.171;HaplotypeScore=5.9139;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=0;MQRankSum=-0.956;QD=13.15;ReadPosRankSum=2.946;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:3,201:206:99:2741,291,0 chrXII 22083 . T C 2922 SnpCluster AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=14.54;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:2955,318,0 chrXII 22146 . G T 5026.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.2505;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=23.06;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5026,523,0 chrXII 22201 . A G 6300.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=24.42;SB=-2.915e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:6300,673,0 chrXII 22395 . C T 4783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=19.6927;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=-0.866;QD=22.89;ReadPosRankSum=1.366;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4783,466,0 chrXII 22436 . G A 4061.01 SnpCluster AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=19.43;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4061,430,0 chrXII 22437 . G A 4122.01 SnpCluster AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=20.21;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4122,427,0 chrXII 22443 . A G 3893.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=202;Dels=0.00;FS=2.693;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;MQRankSum=-1.387;QD=19.27;ReadPosRankSum=2.425;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:3893,417,0 chrXII 22491 . G A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=18.51;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3554,378,0 chrXII 22509 . G A 3440.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.98;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3440,357,0 chrXII 22572 . G A 2746 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.47;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2779,288,0 chrXII 22603 . T C 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.323;QD=24.41;ReadPosRankSum=2.415;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3442,372,0 chrXII 22642 . G T 4266.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.1512;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.70;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4266,442,0 chrXII 22753 . T C 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.9188;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.279;QD=23.26;ReadPosRankSum=2.321;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:4047,438,0 chrXII 22902 . T A 4441.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.1801;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.66;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4441,477,0 chrXII 23030 . A G 4238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=195;Dels=0.00;FS=5.840;HaplotypeScore=16.4416;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.479;QD=21.73;ReadPosRankSum=2.964;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:3,192:195:99:4238,456,0 chrXII 23062 . T A 4476.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.9128;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=24.59;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4476,469,0 chrXII 23159 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.62;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3330,354,0 chrXII 23228 . A G 4496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=190;Dels=0.00;FS=3.151;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.940;QD=23.66;ReadPosRankSum=1.677;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4496,483,0 chrXII 23505 . A G 4088.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=152.6805;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.23;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4088,438,0 chrXII 23568 . T C 3528.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.8086;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.16;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3528,378,0 chrXII 23820 . G C 3941.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;QD=15.45;SB=-3.118e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:3941,415,0 chrXII 23826 . C G 3678.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=14.42;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:3678,396,0 chrXII 23845 . T A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=14.39;SB=-3.251e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:3683,385,0 chrXII 23846 . C A 3660.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=14.30;SB=-3.160e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:3660,379,0 chrXII 23860 . A G 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=269;Dels=0.00;FS=7.951;HaplotypeScore=7.9367;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;MQRankSum=-0.543;QD=12.86;ReadPosRankSum=2.431;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:2,267:269:99:3458,372,0 chrXII 23981 . C T 5430.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=22.7710;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.25;SB=-3.215e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5430,574,0 chrXII 24051 . T C 7018.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=9.8289;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=23.87;SB=-3.711e+03 GT:AD:DP:GQ:PL 1/1:0,294:294:99:7018,733,0 chrXII 24179 . G A 4663.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.94;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4663,481,0 chrXII 24246 . T G 4254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=197;Dels=0.00;FS=4.365;HaplotypeScore=17.4320;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=0.000;QD=21.59;ReadPosRankSum=1.696;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,193:197:99:4254,459,0 chrXII 24279 . T C 3561.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.5555;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=21.20;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3561,387,0 chrXII 24315 . G A 3205.99 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=21.66;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3239,334,0 chrXII 24323 . C T 2846 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.23;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2879,309,0 chrXII 24384 . T C 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=141;Dels=0.00;FS=3.437;HaplotypeScore=12.8742;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=0.735;QD=19.44;ReadPosRankSum=1.707;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:2774,300,0 chrXII 24591 . T A 3752.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=24.85;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3752,388,0 chrXII 24681 . C T 5520.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=26.29;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5520,580,0 chrXII 24890 . G A 4610.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=21.75;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4610,475,0 chrXII 24893 . T A 4473.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=21.61;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4473,460,0 chrXII 24926 . G A 3839.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.00;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:3839,402,0 chrXII 24948 . T C 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=0.028;QD=18.74;ReadPosRankSum=1.714;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3504,366,0 chrXII 25143 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=21.35;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2809,294,0 chrXII 25333 . C T 878 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.51;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:911,96,0 chrXII 25369 . T G 525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.088;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;MQRankSum=-0.999;QD=12.50;ReadPosRankSum=2.330;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:2,39:42:60:558,60,0 chrXII 25388 . A T 676 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.04;FS=0.000;HaplotypeScore=9.7483;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.25;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:72:709,72,0 chrXII 25389 . A T 666 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.04;FS=0.000;HaplotypeScore=10.7148;MLEAC=2;MLEAF=1.00;MQ=30.05;MQ0=0;QD=12.57;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:72:699,72,0 chrXII 25411 . C T 767 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.6308;MLEAC=2;MLEAF=1.00;MQ=38.57;MQ0=0;QD=14.75;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:87:800,87,0 chrXII 25449 . C T 908 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=21.12;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:941,99,0 chrXII 25493 . C T 1107 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7870;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.42;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1140,120,0 chrXII 25499 . A G 1281 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.71;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1314,144,0 chrXII 25545 . C T 2191 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=24.90;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2224,234,0 chrXII 25640 . G A 2617 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=23.79;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2650,282,0 chrXII 25817 . T G 3743.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3743,402,0 chrXII 25933 . A G 3666.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.35;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3666,384,0 chrXII 26176 . G A 4519.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.26;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4519,463,0 chrXII 26194 . C G 4305.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.3516;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.96;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4305,451,0 chrXII 26362 . C G 5254.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=21.3177;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.25;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5254,570,0 chrXII 26652 . C T 4331.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=19.2804;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.44;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4331,448,0 chrXII 27093 . T C 5329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.638;QD=24.22;ReadPosRankSum=1.716;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5329,568,0 chrXII 27180 . G A 4059.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=20.3395;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.50;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,186:198:99:4059,447,0 chrXII 27238 . C T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=17.70;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3451,358,0 chrXII 27526 . A G 5324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=18.5352;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.738;QD=23.05;ReadPosRankSum=1.687;SB=-3.051e+03 GT:AD:DP:GQ:PL 1/1:1,229:231:99:5324,568,0 chrXII 27921 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.92;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4038,429,0 chrXII 28285 . A T 2378 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.98;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2411,246,0 chrXII 28293 . T C 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=121;Dels=0.00;FS=7.941;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-0.527;QD=19.04;ReadPosRankSum=2.408;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:2,117:121:99:2337,249,0 chrXII 28349 . C T 2826 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=16.3956;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.25;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2859,303,0 chrXII 28676 . G C 3617.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.64;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3617,384,0 chrXII 28784 . G A 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.319;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.4997;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.043;QD=21.36;ReadPosRankSum=-1.437;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3824,372,0 chrXII 28824 . G C 4214.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.4510;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.08;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,167:175:99:4214,445,0 chrXII 28868 . G A 6061.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=15.9921;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.34;SB=-2.998e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:6061,649,0 chrXII 29085 . G C 5628.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.33;SB=-3.023e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5628,604,0 chrXII 29137 . G A 4990.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.79;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:4990,529,0 chrXII 29160 . C T 4827.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=5.7702;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.45;SB=-3.064e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:4827,493,0 chrXII 29379 . T C 6882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=300;Dels=0.00;FS=5.257;HaplotypeScore=22.4348;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.287;QD=22.94;ReadPosRankSum=2.895;SB=-3.114e+03 GT:AD:DP:GQ:PL 1/1:3,294:300:99:6882,730,0 chrXII 29414 . A C 5230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=247;Dels=0.00;FS=7.371;HaplotypeScore=8.9048;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.323;QD=21.17;ReadPosRankSum=2.410;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:5230,553,0 chrXII 29437 . T C 4481.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=17.85;SB=-2.925e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:4481,483,0 chrXII 29440 . C T 4354.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=17.49;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:4354,460,0 chrXII 29612 . A G 6015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=251;Dels=0.00;FS=5.496;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.667;QD=23.96;ReadPosRankSum=2.956;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:3,247:251:99:6015,637,0 chrXII 29773 . C A 4029.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.66;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4029,418,0 chrXII 29781 . T G 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=192;Dels=0.00;FS=2.561;HaplotypeScore=8.1405;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-1.384;QD=17.40;ReadPosRankSum=2.953;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:3,188:192:99:3340,372,0 chrXII 29948 . T A 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.990;DP=155;Dels=0.00;FS=8.585;HaplotypeScore=17.0085;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-2.037;QD=22.32;ReadPosRankSum=2.196;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3460,360,0 chrXII 30012 . A G 4903.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.9810;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.91;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4903,523,0 chrXII 30087 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.517;DP=153;Dels=0.00;FS=5.992;HaplotypeScore=18.0144;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=2.749;QD=21.75;ReadPosRankSum=2.953;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:3,145:153:99:3327,351,0 chrXII 30327 . C T 4885.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-2.789e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4885,517,0 chrXII 30768 . C T 3410.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.58;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3410,366,0 chrXII 30930 . C T 3690.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.4378;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.50;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3690,396,0 chrXII 31128 . C T 3629.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.82;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3629,379,0 chrXII 31221 . T C 6941.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=8.9888;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.69;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:6941,757,0 chrXII 31551 . C A 1812 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.83;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1845,192,0 chrXII 31899 . T A 1140 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1173,123,0 chrXII 33112 . A G 3984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.020;QD=22.90;ReadPosRankSum=1.613;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3984,423,0 chrXII 33349 . A C 4129.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.94;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4129,447,0 chrXII 33353 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1209;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.37;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4206,433,0 chrXII 36311 . C T 4507.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.0517;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4507,480,0 chrXII 36662 . G A 2843 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.38;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2876,294,0 chrXII 39802 . C T 2739 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2772,294,0 chrXII 40119 . G A 4440.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=16.1181;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4440,466,0 chrXII 40612 . A G 3930.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.4077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3930,423,0 chrXII 46414 . T A 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=122;Dels=0.01;FS=4.807;HaplotypeScore=111.9837;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-1.618;QD=21.16;ReadPosRankSum=1.703;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2615,267,0 chrXII 47324 . C A 3091 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=26.88;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3124,324,0 chrXII 47928 . G A 4483.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=16.4117;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=25.19;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4483,475,0 chrXII 48833 . T A 892 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=6.4140;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.27;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:925,99,0 chrXII 49831 . T A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.05;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3771,402,0 chrXII 50192 . A G 5197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=200;Dels=0.00;FS=10.458;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.663;QD=25.99;ReadPosRankSum=1.680;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:1,199:200:99:5197,544,0 chrXII 50531 . C T 6432.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=20.3416;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.18;SB=-3.002e+03 GT:AD:DP:GQ:PL 1/1:0,288:290:99:6432,691,0 chrXII 55033 . C T 4953.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.4480;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.89;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4953,499,0 chrXII 56781 . G T 3709.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.78;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3709,390,0 chrXII 58720 . A C 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=182;Dels=0.00;FS=3.559;HaplotypeScore=19.8403;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.851;QD=23.47;ReadPosRankSum=1.713;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,176:182:99:4271,462,0 chrXII 61318 . A G 3825.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.04;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3825,417,0 chrXII 62374 . C T 3292.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.8294;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.66;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3292,342,0 chrXII 63675 . C T 3285.01 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=27.15;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3285,334,0 chrXII 63859 . C G 1822 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.44;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1855,195,0 chrXII 63864 . C T 1980 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=22.00;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2013,204,0 chrXII 64307 . G A 4239.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.3353;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=2;QD=24.36;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4239,436,0 chrXII 64437 . T C 4824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=16.2604;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.681;QD=22.44;ReadPosRankSum=1.699;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:1,210:215:99:4824,511,0 chrXII 64614 . A G 5464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=238;Dels=0.00;FS=6.262;HaplotypeScore=11.4610;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.964;QD=22.96;ReadPosRankSum=2.398;SB=-3.163e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:5464,594,0 chrXII 64763 . G A 6237.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=24.0810;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=23.27;SB=-3.160e+03 GT:AD:DP:GQ:PL 1/1:0,264:268:99:6237,649,0 chrXII 64824 . A G 7151.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=18.4874;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.22;SB=-3.389e+03 GT:AD:DP:GQ:PL 1/1:0,306:308:99:7151,781,0 chrXII 64866 . C T 7974.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=13.2809;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.02;SB=-4.193e+03 GT:AD:DP:GQ:PL 1/1:0,332:332:99:7974,832,0 chrXII 65327 . C T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=24.68;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3726,391,0 chrXII 65348 . G A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.3234;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=24.18;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3337,343,0 chrXII 65517 . T C 2041 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=21.71;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2074,228,0 chrXII 65523 . A T 1974 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=21.00;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2007,213,0 chrXII 65695 . C A 4477.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=25.58;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4477,466,0 chrXII 65728 . G A 4536.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.65;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4536,489,0 chrXII 65835 . C T 3706.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=21.18;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3706,399,0 chrXII 65841 . G A 3690.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.27;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3690,385,0 chrXII 65892 . A G 4449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=18.0525;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.764;QD=19.26;ReadPosRankSum=1.656;SB=-2.869e+03 GT:AD:DP:GQ:PL 1/1:1,228:231:99:4449,486,0 chrXII 65992 . C T 5683.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.15;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5683,577,0 chrXII 66338 . G A 6409.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=23.7876;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.89;SB=-3.631e+03 GT:AD:DP:GQ:PL 1/1:0,277:280:99:6409,655,0 chrXII 66595 . A G 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.885;DP=167;Dels=0.00;FS=7.356;HaplotypeScore=24.2478;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.451;QD=16.10;ReadPosRankSum=3.963;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:6,158:167:99:2722,294,0 chrXII 66714 . T C 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=176;Dels=0.00;FS=2.754;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.849;QD=24.10;ReadPosRankSum=2.422;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4241,462,0 chrXII 66743 . A T 3700.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.72;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3700,390,0 chrXII 66946 . T C 6074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=262;Dels=0.00;FS=2.738;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.760;QD=23.18;ReadPosRankSum=2.431;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:2,258:262:99:6074,652,0 chrXII 67069 . A G 4513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=213;Dels=0.00;FS=2.988;HaplotypeScore=20.5722;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.052;QD=21.19;ReadPosRankSum=2.426;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4513,492,0 chrXII 67247 . A G 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.150;DP=169;Dels=0.00;FS=7.487;HaplotypeScore=8.0534;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.004;QD=22.81;ReadPosRankSum=4.125;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:6,163:169:99:3855,408,0 chrXII 67354 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1093;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=19.28;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2887,300,0 chrXII 67367 . A G 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=0.627;QD=18.92;ReadPosRankSum=1.708;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2720,285,0 chrXII 67368 . C T 2762 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.59;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2795,283,0 chrXII 67726 . T C 3963.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.5486;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.08;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3963,426,0 chrXII 68071 . T C 4485.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.0955;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.51;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4485,486,0 chrXII 68253 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.2180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3944,400,0 chrXII 68368 . T A 2891 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.7538;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.08;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2924,300,0 chrXII 68373 . A T 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=142;Dels=0.00;FS=7.380;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=-0.164;QD=18.63;ReadPosRankSum=2.346;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2678,282,0 chrXII 68671 . A G 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=7.463;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.009;QD=24.66;ReadPosRankSum=2.310;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3477,366,0 chrXII 69006 . T A 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.741;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.610;QD=21.42;ReadPosRankSum=1.708;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3074,336,0 chrXII 69396 . A G 4129.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.01;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4129,433,0 chrXII 70019 . C T 3514.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.9511;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.24;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3514,369,0 chrXII 70044 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.65;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3807,391,0 chrXII 70124 . A G 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=3.765;HaplotypeScore=9.9189;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.180;QD=22.96;ReadPosRankSum=1.707;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3224,342,0 chrXII 70244 . C T 5003.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.40;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:5003,520,0 chrXII 70541 . A T 1767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.608;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.405;QD=22.09;ReadPosRankSum=2.912;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1800,195,0 chrXII 71063 . C G 4151.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.6122;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.59;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4151,441,0 chrXII 71641 . C G 4928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.318;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=17.2124;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.202;QD=23.14;ReadPosRankSum=0.456;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:1,208:213:99:4928,512,0 chrXII 71722 . A G 4110.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4110,430,0 chrXII 72520 . A G 4793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.767;DP=203;Dels=0.00;FS=2.567;HaplotypeScore=14.3177;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.302;QD=23.61;ReadPosRankSum=2.936;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:3,200:203:99:4793,516,0 chrXII 72632 . T C 4816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.797;QD=23.96;ReadPosRankSum=1.715;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4816,508,0 chrXII 72987 . C T 3563.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.44;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3563,364,0 chrXII 73290 . C A 4520.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.3864;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.84;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4520,463,0 chrXII 73717 . T G 3928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=3.534;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.925;QD=22.32;ReadPosRankSum=1.673;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3928,411,0 chrXII 73718 . C G 3928.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.19;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3928,409,0 chrXII 73752 . G A 3894.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.40;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3894,400,0 chrXII 73830 . T C 4388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=3.516;HaplotypeScore=11.1026;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.552;QD=25.22;ReadPosRankSum=1.672;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4388,465,0 chrXII 74641 . T C 1433 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.05;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1466,156,0 chrXII 74872 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.9396;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.20;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3364,348,0 chrXII 75086 . A C 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=13.3014;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.030;QD=24.68;ReadPosRankSum=1.710;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3924,409,0 chrXII 75569 . C T 4072.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.10;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4072,427,0 chrXII 75903 . C T 3505.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.35;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3505,361,0 chrXII 76057 . G A 4424.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:4424,457,0 chrXII 76544 . A T 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.722;DP=170;Dels=0.00;FS=2.488;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.521;QD=23.02;ReadPosRankSum=2.935;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:3914,409,0 chrXII 76603 . G T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.65;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,157:162:99:3831,394,0 chrXII 76840 . T C 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.492;DP=103;Dels=0.00;FS=6.619;HaplotypeScore=6.5503;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=1.080;QD=23.38;ReadPosRankSum=1.012;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,100:103:99:2441,261,0 chrXII 76842 . G A 2421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.189;DP=101;Dels=0.00;FS=6.821;HaplotypeScore=4.9729;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=1.080;QD=23.97;ReadPosRankSum=1.115;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2454,233,0 chrXII 76925 . A G 1227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.167;QD=22.31;ReadPosRankSum=2.872;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:3,52:55:99:1260,129,0 chrXII 77139 . G A 982 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,38:39:99:1015,105,0 chrXII 77520 . C T 3587.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.2647;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.91;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3587,370,0 chrXII 77743 . A C 2844 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2877,309,0 chrXII 78276 . G A 4734.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.7102;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.32;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4734,490,0 chrXII 78394 . C T 5125.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5125,520,0 chrXII 79336 . G A 6375.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=25.40;SB=-3.546e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:6375,643,0 chrXII 79798 . G C 3930.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.05;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:3930,432,0 chrXII 79987 . C T 1709 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.59;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1742,180,0 chrXII 80023 . T C 1891 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.51;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1924,198,0 chrXII 80089 . C T 967 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.15;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,45:48:99:1000,111,0 chrXII 80880 . T G 1238 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.51;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1271,135,0 chrXII 81026 . C T 699 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=19.42;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:78:732,78,0 chrXII 81045 . T C 792 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=17.22;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:825,90,0 chrXII 81096 . G A 1975 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.5553;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=25.00;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2008,207,0 chrXII 81240 . C T 1500 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=5.7528;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.81;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1533,159,0 chrXII 82033 . A G 4825.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.7193;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.98;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4825,520,0 chrXII 82171 . A G 4240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=171;Dels=0.00;FS=3.034;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.397;QD=24.80;ReadPosRankSum=2.421;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:4240,453,0 chrXII 82288 . T C 4543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.9970;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.415;QD=24.42;ReadPosRankSum=1.695;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4543,489,0 chrXII 82321 . C T 4494.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.16;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4494,469,0 chrXII 82757 . A G 4670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=205;Dels=0.00;FS=6.798;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.138;QD=22.78;ReadPosRankSum=2.402;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4670,487,0 chrXII 82779 . A T 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=191;Dels=0.00;FS=6.008;HaplotypeScore=3.7875;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-0.153;QD=21.52;ReadPosRankSum=2.679;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:4110,435,0 chrXII 82792 . A G 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=188;Dels=0.00;FS=2.906;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=0.614;QD=20.26;ReadPosRankSum=2.397;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:3809,411,0 chrXII 82946 . T C 4846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=202;Dels=0.00;FS=7.049;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.237;QD=23.99;ReadPosRankSum=2.389;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4846,525,0 chrXII 83008 . C G 3148 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.17;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3181,345,0 chrXII 84031 . C T 3165 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3198,345,0 chrXII 84172 . C T 3650.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.96;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3650,382,0 chrXII 84451 . A G 3308.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.7364;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.90;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3308,348,0 chrXII 84455 . A G 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.2880;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.463;QD=18.02;ReadPosRankSum=1.712;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3150,330,0 chrXII 84504 . G A 2010 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=13.9015;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=16.34;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2043,219,0 chrXII 85153 . C T 4710.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=21.2870;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.09;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4710,490,0 chrXII 85270 . C G 5928.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=19.2282;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.96;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,266:270:99:5928,643,0 chrXII 85385 . G A 4884.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=19.8021;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.71;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:4884,505,0 chrXII 85632 . T G 4598.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.8464;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.11;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,195:199:99:4598,495,0 chrXII 86319 . T C 4860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.386;QD=23.14;ReadPosRankSum=1.699;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4860,519,0 chrXII 86369 . A T 5274.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=23.76;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5274,553,0 chrXII 86595 . T C 952 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=29.9173;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=13.04;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:985,108,0 chrXII 86612 . A T 168.03 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=27.7481;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=2.07;SB=-8.504e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:24:201,24,0 chrXII 86628 . T C 888 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=11.84;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:921,99,0 chrXII 86679 . C T 1048 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=18.07;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1081,111,0 chrXII 86881 . T C 1646 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=24.94;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1679,180,0 chrXII 86978 . T A 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.414;QD=24.73;ReadPosRankSum=1.697;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2457,258,0 chrXII 87080 . C T 1761 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1794,186,0 chrXII 87286 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.61;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2583,270,0 chrXII 87340 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.14;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3524,372,0 chrXII 87687 . T C 5274.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.54;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5274,559,0 chrXII 88053 . A T 2740 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.86;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2773,294,0 chrXII 88069 . A G 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.249;QD=20.04;ReadPosRankSum=3.350;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:4,126:130:99:2638,282,0 chrXII 88298 . G A 2032 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=24.78;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2065,216,0 chrXII 88422 . A T 1792 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.24;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1825,189,0 chrXII 88452 . G A 2055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.356;QD=22.34;ReadPosRankSum=0.828;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2088,216,0 chrXII 88703 . T C 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=155;Dels=0.00;FS=3.039;HaplotypeScore=10.6336;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.359;QD=22.65;ReadPosRankSum=2.290;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3511,369,0 chrXII 88892 . T C 4172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=179;Dels=0.00;FS=2.986;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.268;QD=23.31;ReadPosRankSum=2.422;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4172,450,0 chrXII 89132 . C T 5462.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.38;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,221:224:99:5462,568,0 chrXII 89774 . A T 5588.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.6676;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.73;SB=-3.053e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5588,577,0 chrXII 89864 . G A 4500.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.0578;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.94;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4500,483,0 chrXII 90629 . C G 4676.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=24.5912;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,210:215:99:4676,507,0 chrXII 91951 . T C 1794 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.86;MQ0=0;QD=21.88;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1827,201,0 chrXII 91967 . G A 1559 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;QD=19.99;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1592,171,0 chrXII 92007 . T C 1078 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=37.95;MQ0=0;QD=17.11;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1111,120,0 chrXII 92018 . C A 1200 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.37;MQ0=0;QD=19.05;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1233,126,0 chrXII 92134 . T A 1404 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=19.77;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1437,150,0 chrXII 92138 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=18.58;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1352,144,0 chrXII 92153 . C G 1429 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=19.31;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1462,156,0 chrXII 92258 . A T 982 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=1;QD=15.59;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1015,105,0 chrXII 92266 . C T 1041 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=40.87;MQ0=1;QD=16.27;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1074,114,0 chrXII 92295 . C T 1003 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=1;QD=15.43;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1036,108,0 chrXII 92366 . G T 1519 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=20.25;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1552,165,0 chrXII 92408 . G A 983 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=16.11;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1016,111,0 chrXII 92471 . T C 587 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=0;QD=9.17;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:69:620,69,0 chrXII 92472 . T C 576 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;QD=9.14;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:69:609,69,0 chrXII 92482 . G A 708 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.44;MQ0=0;QD=10.11;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:81:741,81,0 chrXII 92496 . C A 1011 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.68;MQ0=0;QD=13.30;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1044,111,0 chrXII 92501 . C T 961 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;QD=12.81;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:994,108,0 chrXII 92528 . T C 1009 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;QD=14.84;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1042,111,0 chrXII 92535 . C T 1057 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=38.51;MQ0=0;QD=15.32;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1090,117,0 chrXII 92595 . C A 1269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.689;DP=82;Dels=0.00;FS=26.274;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=3;MQRankSum=4.120;QD=15.48;ReadPosRankSum=-3.600;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:11,71:82:73:1302,73,0 chrXII 92596 . T C 1200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.006;DP=81;Dels=0.00;FS=18.493;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=3;MQRankSum=3.401;QD=14.81;ReadPosRankSum=-2.878;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:12,68:81:70:1233,70,0 chrXII 92677 . C A 1798 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=16.35;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1831,189,0 chrXII 92680 . T C 1735 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=110;Dels=0.00;FS=2.512;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;MQRankSum=-2.147;QD=15.77;ReadPosRankSum=2.936;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:3,107:110:99:1768,192,0 chrXII 92685 . T A 1826 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.1104;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;MQRankSum=-1.044;QD=15.34;ReadPosRankSum=2.346;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:2,117:119:99:1859,201,0 chrXII 92744 . T G 2236 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=131.9303;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;QD=15.97;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2269,240,0 chrXII 92789 . G T 2137 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=9.1998;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=15.49;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2170,231,0 chrXII 92800 . A T 2136 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=15.94;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2169,225,0 chrXII 92878 . T C 3938.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.3554;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=23.72;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3938,423,0 chrXII 93019 . G A 3862.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=23.27;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3862,411,0 chrXII 93045 . T G 3952.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=23.66;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3952,420,0 chrXII 93073 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=22.23;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3256,342,0 chrXII 93102 . T C 2879 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.86;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2912,306,0 chrXII 93142 . A G 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8287;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=1.237;QD=22.28;ReadPosRankSum=1.677;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2862,306,0 chrXII 93161 . G A 2892 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.51;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2925,300,0 chrXII 93274 . C A 2603 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=107.5631;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.02;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2636,279,0 chrXII 93314 . A T 2977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=7.573;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=1.024;QD=21.57;ReadPosRankSum=2.414;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3010,309,0 chrXII 93341 . C A 2754 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.26;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2787,288,0 chrXII 93360 . T C 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-1.707;QD=19.19;ReadPosRankSum=1.707;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2719,291,0 chrXII 93418 . G A 2908 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=23.45;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2941,300,0 chrXII 93488 . G A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=23.88;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3510,367,0 chrXII 93654 . G A 3785.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.4712;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.66;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3785,394,0 chrXII 93662 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.607;DP=167;Dels=0.00;FS=12.270;HaplotypeScore=9.7806;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=1.526;QD=20.73;ReadPosRankSum=3.693;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:5,160:167:99:3462,372,0 chrXII 93735 . A G 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.614;HaplotypeScore=10.3237;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.247;QD=24.26;ReadPosRankSum=1.710;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3736,393,0 chrXII 93814 . G C 4582.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.01;FS=0.000;HaplotypeScore=30.9783;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=22.03;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,201:206:99:4582,492,0 chrXII 93954 . G A 4415.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.6927;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.61;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4415,477,0 chrXII 94031 . A G 4179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-0.044;QD=21.32;ReadPosRankSum=1.714;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4179,444,0 chrXII 94032 . A T 4289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.375;QD=22.11;ReadPosRankSum=1.714;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4289,436,0 chrXII 94044 . C T 4567.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=22.50;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4567,466,0 chrXII 94172 . A G 5205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=221;Dels=0.00;FS=7.989;HaplotypeScore=18.1885;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.680;QD=23.55;ReadPosRankSum=0.575;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:2,218:221:99:5205,570,0 chrXII 94500 . G A 4517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=205;Dels=0.00;FS=2.561;HaplotypeScore=12.5252;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.066;QD=22.03;ReadPosRankSum=0.186;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4517,449,0 chrXII 94522 . G A 3699.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.51;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3699,379,0 chrXII 94566 . C G 3698.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.97;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3698,393,0 chrXII 94617 . T C 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=3.979;HaplotypeScore=12.5622;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.944;QD=24.72;ReadPosRankSum=1.684;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3609,387,0 chrXII 94650 . G A 3531.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.6743;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.35;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3531,369,0 chrXII 94681 . C T 4376.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.72;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4376,451,0 chrXII 94959 . A G 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=193;Dels=0.00;FS=6.180;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-1.317;QD=22.63;ReadPosRankSum=2.411;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4367,460,0 chrXII 95188 . C T 1706 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1739,183,0 chrXII 95641 . T A 2975 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=26.33;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3008,315,0 chrXII 95821 . G T 5486.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.4473;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=24.27;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5486,562,0 chrXII 95935 . A G 2128 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=23.90;MQ0=58;MQRankSum=-0.781;QD=10.64;ReadPosRankSum=1.708;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:37,163:200:99:2161,240,0 chrXII 95937 . C A 2193 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=23.86;MQ0=57;QD=11.13;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:36,161:197:99:2226,240,0 chrXII 95938 . A G 2160 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.83;MQ0=57;MQRankSum=-1.707;QD=11.02;ReadPosRankSum=1.707;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:37,159:196:99:2193,240,0 chrXII 95944 . C T 1760 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=206;Dels=0.00;FS=12.018;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.45;MQ0=51;MQRankSum=-0.228;QD=8.54;ReadPosRankSum=3.793;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:38,168:206:99:1793,208,0 chrXII 95945 . T C 1763 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.142;DP=206;Dels=0.00;FS=6.614;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.53;MQ0=50;MQRankSum=1.249;QD=8.56;ReadPosRankSum=4.142;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:39,167:206:99:1796,227,0 chrXII 95992 . G A 2807 filter AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=27.36;MQ0=12;QD=13.00;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:12,204:216:99:2840,303,0 chrXII 96004 . C T 2639 filter AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=7;QD=13.19;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:6,193:200:99:2672,276,0 chrXII 96010 . A G 2193 filter AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=7;QD=11.73;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:7,180:187:99:2226,243,0 chrXII 96022 . G A 2259 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=8;QD=12.02;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:8,180:188:99:2292,237,0 chrXII 96025 . G A 2304 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=9;QD=12.59;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:8,175:183:99:2337,240,0 chrXII 96028 . G A 2335 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=9;QD=12.83;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:8,174:182:99:2368,243,0 chrXII 96034 . A G 2227 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=27.36;MQ0=15;QD=12.65;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:11,165:176:99:2260,243,0 chrXII 96040 . A G 2093 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=27.00;MQ0=22;MQRankSum=0.244;QD=12.24;ReadPosRankSum=1.709;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:16,153:171:99:2126,222,0 chrXII 96151 . G A 2697 filter AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.04;MQ0=85;QD=12.72;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:53,159:212:99:2730,288,0 chrXII 96166 . A G 3058 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=215;Dels=0.00;FS=10.317;HaplotypeScore=4.5305;MLEAC=2;MLEAF=1.00;MQ=26.81;MQ0=57;MQRankSum=-1.084;QD=14.22;ReadPosRankSum=2.241;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:45,165:215:99:3091,333,0 chrXII 96169 . G A 3345.01 filter AC=2;AF=1.00;AN=2;DP=213;Dels=0.01;FS=0.000;HaplotypeScore=6.8965;MLEAC=2;MLEAF=1.00;MQ=27.35;MQ0=50;QD=15.70;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:36,174:211:99:3345,351,0 chrXII 96340 . A G 354 filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.17;MQ0=98;QD=2.88;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:47,76:123:42:387,42,0 chrXII 96400 . T A 1056 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.014;DP=178;Dels=0.00;FS=50.911;HaplotypeScore=11.1266;MLEAC=2;MLEAF=1.00;MQ=19.48;MQ0=95;MQRankSum=3.233;QD=5.93;ReadPosRankSum=2.554;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:59,119:178:52:1089,52,0 chrXII 96451 . T C 1470.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;DP=184;Dels=0.00;FS=75.581;HaplotypeScore=6.1858;MLEAC=1;MLEAF=0.500;MQ=22.33;MQ0=60;MQRankSum=4.222;QD=7.99;ReadPosRankSum=-2.367;SB=-2.790e+02 GT:AD:DP:GQ:PL 0/1:46,138:184:54:1500,0,54 chrXII 96472 . G A 1340.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;DP=174;Dels=0.00;FS=60.581;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.500;MQ=21.24;MQ0=61;MQRankSum=3.560;QD=7.70;ReadPosRankSum=0.336;SB=-2.550e+02 GT:AD:DP:GQ:PL 0/1:47,126:174:45:1370,0,45 chrXII 96514 . A G 405 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.6231;MLEAC=2;MLEAF=1.00;MQ=16.45;MQ0=51;QD=4.71;SB=-6.648e-03 GT:AD:DP:GQ:PL 1/1:0,84:86:48:438,48,0 chrXII 97108 . C T 2064.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.264;DP=317;Dels=0.00;FS=328.549;HaplotypeScore=26.8851;MLEAC=1;MLEAF=0.500;MQ=32.64;MQ0=12;MQRankSum=9.622;QD=6.51;ReadPosRankSum=-2.483;SB=-9.250e+02 GT:AD:DP:GQ:PL 0/1:147,166:317:99:2094,0,1982 chrXII 97129 . G A 1367.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.374;DP=287;Dels=0.00;FS=413.404;HaplotypeScore=16.9574;MLEAC=1;MLEAF=0.500;MQ=30.75;MQ0=12;MQRankSum=10.710;QD=4.76;ReadPosRankSum=0.086;SB=-4.190e+02 GT:AD:DP:GQ:PL 0/1:134,153:287:99:1397,0,1730 chrXII 97147 . G A 1105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.048;DP=292;Dels=0.00;FS=418.134;HaplotypeScore=12.1099;MLEAC=1;MLEAF=0.500;MQ=28.22;MQ0=15;MQRankSum=10.152;QD=3.78;ReadPosRankSum=1.322;SB=-4.350e+02 GT:AD:DP:GQ:PL 0/1:124,167:292:99:1135,0,1714 chrXII 97153 . G T 1275.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.565;DP=286;Dels=0.00;FS=419.391;HaplotypeScore=14.3177;MLEAC=1;MLEAF=0.500;MQ=28.45;MQ0=14;MQRankSum=9.820;QD=4.46;ReadPosRankSum=0.651;SB=-5.560e+02 GT:AD:DP:GQ:PL 0/1:114,170:286:99:1305,0,1661 chrXII 97159 . G A 1543.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.672;DP=311;Dels=0.00;FS=401.400;HaplotypeScore=13.6916;MLEAC=1;MLEAF=0.500;MQ=31.05;MQ0=14;MQRankSum=9.765;QD=4.96;ReadPosRankSum=-2.037;SB=-7.690e+02 GT:AD:DP:GQ:PL 0/1:107,204:311:99:1573,0,1432 chrXII 97171 . A G 2574.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.593;DP=333;Dels=0.00;FS=357.493;HaplotypeScore=25.6305;MLEAC=1;MLEAF=0.500;MQ=35.80;MQ0=13;MQRankSum=9.820;QD=7.73;ReadPosRankSum=-3.611;SB=-1.151e+03 GT:AD:DP:GQ:PL 0/1:97,233:333:99:2604,0,1191 chrXII 97429 . G A 5704.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=2;QD=22.82;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5704,586,0 chrXII 97559 . T C 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=130;Dels=0.00;FS=3.962;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.205;QD=23.39;ReadPosRankSum=1.705;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,126:130:99:3074,330,0 chrXII 97599 . C T 3762.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.49;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3762,399,0 chrXII 97654 . A C 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.675;DP=134;Dels=0.00;FS=13.182;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.432;QD=22.30;ReadPosRankSum=2.735;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:3,130:134:99:3021,307,0 chrXII 97828 . C T 2409 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2442,270,0 chrXII 98056 . T C 3172 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.88;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3205,336,0 chrXII 98260 . C T 5692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.836;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.5789;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.717;QD=24.96;ReadPosRankSum=1.322;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5692,563,0 chrXII 98309 . G A 5076.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=20.6201;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.39;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5076,526,0 chrXII 98471 . A G 4447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=3.058;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.275;QD=24.43;ReadPosRankSum=1.694;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4447,466,0 chrXII 98655 . G A 5101.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=16.1448;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.29;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5101,532,0 chrXII 98696 . G T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.9766;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.56;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4005,415,0 chrXII 99134 . C T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.53;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3633,408,0 chrXII 99257 . G A 4960.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=15.2217;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.02;SB=-3.068e+03 GT:AD:DP:GQ:PL 1/1:0,233:236:99:4960,534,0 chrXII 99539 . T A 9206.01 filter AC=2;AF=1.00;AN=2;DP=397;Dels=0.00;FS=0.000;HaplotypeScore=24.3734;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.19;SB=-4.767e+03 GT:AD:DP:GQ:PL 1/1:0,397:397:99:9206,958,0 chrXII 99667 . G A 8354.01 filter AC=2;AF=1.00;AN=2;DP=393;Dels=0.00;FS=0.000;HaplotypeScore=25.6677;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.26;SB=-4.152e+03 GT:AD:DP:GQ:PL 1/1:0,391:393:99:8354,886,0 chrXII 100126 . C T 2628 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=22.08;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2661,273,0 chrXII 100150 . C G 2094 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.33;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2127,225,0 chrXII 100257 . G A 2571 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.57;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2604,270,0 chrXII 100464 . T C 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=140;Dels=0.00;FS=2.583;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.014;QD=24.16;ReadPosRankSum=2.921;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:3383,360,0 chrXII 100682 . A G 5439.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.6797;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.42;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5439,583,0 chrXII 101264 . T C 6505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=293;Dels=0.00;FS=2.820;HaplotypeScore=22.1265;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.760;QD=22.20;ReadPosRankSum=2.433;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:2,290:293:99:6505,697,0 chrXII 101729 . A T 5215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=213;Dels=0.00;FS=3.028;HaplotypeScore=15.1555;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.343;QD=24.48;ReadPosRankSum=2.380;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:5215,541,0 chrXII 101965 . T G 3225.28 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3258,348,0 chrXII 102371 . G A 4388.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.34;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:4388,451,0 chrXII 102471 . T G 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.171;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=16.0666;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.136;QD=22.52;ReadPosRankSum=2.419;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3581,390,0 chrXII 103019 . A C 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=195;Dels=0.00;FS=2.780;HaplotypeScore=13.6136;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.426;QD=19.33;ReadPosRankSum=2.424;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:2,191:195:99:3770,405,0 chrXII 103352 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.9172;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=24.50;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3218,339,0 chrXII 103524 . C T 4101.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=26.80;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4101,412,0 chrXII 103584 . A G 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;MQRankSum=-0.739;QD=21.38;ReadPosRankSum=1.684;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3091,339,0 chrXII 103655 . A G 1237.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.680;DP=275;Dels=0.00;FS=48.424;HaplotypeScore=34.2252;MLEAC=1;MLEAF=0.500;MQ=38.14;MQ0=0;MQRankSum=-1.251;QD=4.50;ReadPosRankSum=-0.386;SB=-5.360e+02 GT:AD:DP:GQ:PL 0/1:159,115:275:99:1267,0,1821 chrXII 103660 . A C 1273.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.680;DP=288;Dels=0.00;FS=57.677;HaplotypeScore=47.0452;MLEAC=1;MLEAF=0.500;MQ=37.83;MQ0=0;MQRankSum=-3.294;QD=4.42;ReadPosRankSum=-0.278;SB=-4.800e+02 GT:AD:DP:GQ:PL 0/1:173,114:288:99:1303,0,2095 chrXII 103664 . T C 1162.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;DP=283;Dels=0.00;FS=85.265;HaplotypeScore=50.5033;MLEAC=1;MLEAF=0.500;MQ=37.61;MQ0=0;MQRankSum=-5.587;QD=4.11;ReadPosRankSum=0.300;SB=-2.500e+02 GT:AD:DP:GQ:PL 0/1:176,105:283:99:1192,0,2257 chrXII 103670 . C T 1566.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.426;DP=290;Dels=0.00;FS=9.335;HaplotypeScore=42.4176;MLEAC=1;MLEAF=0.500;MQ=37.67;MQ0=0;MQRankSum=-6.258;QD=5.40;ReadPosRankSum=-3.617;SB=-1.075e+03 GT:AD:DP:GQ:PL 0/1:140,150:290:99:1596,0,2122 chrXII 103682 . C T 888.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;DP=301;Dels=0.00;FS=126.720;HaplotypeScore=165.2116;MLEAC=1;MLEAF=0.500;MQ=38.10;MQ0=0;MQRankSum=-4.579;QD=2.95;ReadPosRankSum=0.519;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:206,95:301:99:918,0,3118 chrXII 103697 . T C 1122.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.174;DP=310;Dels=0.00;FS=139.065;HaplotypeScore=239.0328;MLEAC=1;MLEAF=0.500;MQ=39.18;MQ0=0;MQRankSum=-5.782;QD=3.62;ReadPosRankSum=0.888;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:198,112:310:99:1152,0,3048 chrXII 103700 . A G 5502.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.336;DP=306;Dels=0.00;FS=5.215;HaplotypeScore=242.8486;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;MQRankSum=1.300;QD=17.98;ReadPosRankSum=3.427;SB=-3.149e+03 GT:AD:DP:GQ:PL 1/1:4,302:306:99:5502,589,0 chrXII 103706 . G A 754.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.171;DP=310;Dels=0.00;FS=186.468;HaplotypeScore=211.3446;MLEAC=1;MLEAF=0.500;MQ=39.81;MQ0=0;MQRankSum=-7.078;QD=2.43;ReadPosRankSum=2.483;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:236,74:310:99:784,0,3739 chrXII 103707 . A G 1451.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;DP=312;Dels=0.00;FS=8.966;HaplotypeScore=216.7180;MLEAC=1;MLEAF=0.500;MQ=39.86;MQ0=0;MQRankSum=-9.145;QD=4.65;ReadPosRankSum=3.981;SB=-1.116e+03 GT:AD:DP:GQ:PL 0/1:155,154:312:99:1481,0,3017 chrXII 103708 . A G 125.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;DP=315;Dels=0.00;FS=67.893;HaplotypeScore=172.4422;MLEAC=1;MLEAF=0.500;MQ=39.55;MQ0=0;MQRankSum=-4.639;QD=0.40;ReadPosRankSum=2.152;SB=-3.000e+02 GT:AD:DP:GQ:PL 0/1:229,83:315:99:155,0,4314 chrXII 103713 . G A 1761.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=9.681;DP=322;Dels=0.00;FS=12.961;HaplotypeScore=281.4530;MLEAC=1;MLEAF=0.500;MQ=39.14;MQ0=0;MQRankSum=-6.356;QD=5.47;ReadPosRankSum=2.914;SB=-1.223e+03 GT:AD:DP:GQ:PL 0/1:145,177:322:99:1791,0,2783 chrXII 103723 . T C 919.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.808;DP=308;Dels=0.00;FS=199.573;HaplotypeScore=196.9421;MLEAC=1;MLEAF=0.500;MQ=37.56;MQ0=0;MQRankSum=-4.670;QD=2.98;ReadPosRankSum=0.577;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:209,96:308:99:949,0,3058 chrXII 103729 . G A 537.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.406;DP=302;Dels=0.00;FS=161.219;HaplotypeScore=45.9257;MLEAC=1;MLEAF=0.500;MQ=38.19;MQ0=0;MQRankSum=-3.834;QD=1.78;ReadPosRankSum=0.704;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:236,66:302:99:567,0,3775 chrXII 103737 . G T 668.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.135;DP=305;Dels=0.00;FS=155.632;HaplotypeScore=32.2331;MLEAC=1;MLEAF=0.500;MQ=38.47;MQ0=0;MQRankSum=-4.364;QD=2.19;ReadPosRankSum=-0.706;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:219,82:305:99:698,0,3413 chrXII 103751 . C T 4873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=282;Dels=0.00;FS=31.418;HaplotypeScore=13.0716;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;MQRankSum=0.440;QD=17.28;ReadPosRankSum=3.337;SB=-3.183e+03 GT:AD:DP:GQ:PL 1/1:12,270:282:99:4873,443,0 chrXII 103806 . A G 4080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=170;Dels=0.00;FS=8.341;HaplotypeScore=21.6559;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=2.217;QD=24.00;ReadPosRankSum=2.421;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:4080,438,0 chrXII 103918 . C T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=24.15;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3768,405,0 chrXII 104468 . A T 5388.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.9451;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.90;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5388,562,0 chrXII 104679 . C G 5074.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=15.7804;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.35;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,223:227:99:5074,555,0 chrXII 106104 . G C 4632.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=18.2128;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.93;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4632,490,0 chrXII 107406 . G A 7081.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.20;SB=-3.315e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:7081,724,0 chrXII 108688 . G A 4928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.8038;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.337;QD=25.40;ReadPosRankSum=1.499;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4928,514,0 chrXII 108813 . G A 6903.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=8.9226;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.66;SB=-2.882e+03 GT:AD:DP:GQ:PL 1/1:0,266:269:99:6903,703,0 chrXII 109033 . T C 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=211;Dels=0.00;FS=13.487;HaplotypeScore=22.8767;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.375;QD=20.67;ReadPosRankSum=2.426;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:2,204:211:99:4362,463,0 chrXII 109073 . T A 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=3.634;HaplotypeScore=12.7087;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.568;QD=20.39;ReadPosRankSum=1.650;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2622,273,0 chrXII 109155 . A G 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.409;QD=23.83;ReadPosRankSum=1.709;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3575,381,0 chrXII 109244 . A G 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=4.070;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=1.446;QD=26.11;ReadPosRankSum=1.625;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2566,270,0 chrXII 109357 . C T 2248 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=19.89;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2281,234,0 chrXII 109365 . T C 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=3.906;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;MQRankSum=-0.705;QD=18.26;ReadPosRankSum=1.703;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2206,237,0 chrXII 109400 . A G 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=111;Dels=0.00;FS=5.682;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;MQRankSum=-0.064;QD=18.39;ReadPosRankSum=2.937;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2074,222,0 chrXII 109403 . A C 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;MQRankSum=-0.546;QD=18.97;ReadPosRankSum=1.670;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2139,225,0 chrXII 109427 . A T 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6407;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;MQRankSum=-1.204;QD=18.43;ReadPosRankSum=1.699;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1968,213,0 chrXII 109508 . G A 3885.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=26.43;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3885,400,0 chrXII 109577 . C T 2989 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.99;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3022,309,0 chrXII 109707 . T A 3198 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.8333;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=21.18;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3231,339,0 chrXII 109729 . A C 2866 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.36;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2899,315,0 chrXII 109736 . G A 2830 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.36;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2863,297,0 chrXII 109765 . T C 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.008;DP=131;Dels=0.00;FS=17.562;HaplotypeScore=11.3931;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=0.157;QD=18.16;ReadPosRankSum=2.756;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:3,125:131:99:2412,229,0 chrXII 109886 . G A 2920 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.3271;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.96;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2953,306,0 chrXII 110064 . C T 3580.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.9366;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.03;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3580,373,0 chrXII 110463 . C T 5271.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=19.5506;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.96;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5271,550,0 chrXII 110709 . C T 7372.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=10.5459;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.55;SB=-3.928e+03 GT:AD:DP:GQ:PL 1/1:0,313:313:99:7372,799,0 chrXII 110807 . A G 5434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=18.4317;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.131;QD=22.55;ReadPosRankSum=1.718;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:1,237:241:99:5434,580,0 chrXII 110988 . G C 5567.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=20.7103;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.18;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:0,246:251:99:5567,603,0 chrXII 111246 . G A 6147.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=15.0345;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,254:257:99:6147,637,0 chrXII 111423 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.9972;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.500;QD=20.98;ReadPosRankSum=1.655;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3819,402,0 chrXII 111826 . T C 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=179;Dels=0.00;FS=6.144;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.159;QD=23.32;ReadPosRankSum=2.394;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:4175,447,0 chrXII 111932 . T C 5125.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=217;Dels=0.00;FS=2.916;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=0.428;QD=23.62;ReadPosRankSum=2.427;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:2,213:217:99:5125,543,0 chrXII 111940 . G A 4980.01 SnpCluster AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.6722;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=23.27;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4980,523,0 chrXII 111941 . A C 4797.01 SnpCluster AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.4609;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=22.31;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4797,519,0 chrXII 111993 . C A 3874.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=16.6521;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.94;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3874,406,0 chrXII 112101 . G A 5314.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=25.07;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5314,565,0 chrXII 112204 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=143;Dels=0.00;FS=6.752;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-0.232;QD=22.61;ReadPosRankSum=2.346;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3268,345,0 chrXII 112240 . T C 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=154;Dels=0.00;FS=6.102;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.599;QD=20.34;ReadPosRankSum=2.717;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:3,150:154:99:3166,345,0 chrXII 112278 . G A 4096.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.14;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4096,421,0 chrXII 112356 . A G 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-0.560;QD=20.01;ReadPosRankSum=1.705;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2654,288,0 chrXII 112358 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=20.55;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2745,285,0 chrXII 112546 . C A 3328.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.84;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3328,345,0 chrXII 112689 . C T 4012.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=22.17;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4012,415,0 chrXII 112702 . A G 4090.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.76;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4090,435,0 chrXII 112732 . T C 3859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.330;DP=203;Dels=0.00;FS=5.241;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.445;QD=19.01;ReadPosRankSum=3.348;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:4,198:203:99:3859,414,0 chrXII 113022 . A G 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.515;DP=142;Dels=0.00;FS=4.903;HaplotypeScore=12.2481;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.561;QD=21.50;ReadPosRankSum=3.728;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:5,135:142:99:3086,330,0 chrXII 113068 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.89;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3440,372,0 chrXII 113144 . T C 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.704;DP=121;Dels=0.00;FS=7.506;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=1.261;QD=19.42;ReadPosRankSum=3.704;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:5,115:121:99:2383,252,0 chrXII 113145 . T C 2255 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=19.11;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2288,246,0 chrXII 113252 . T C 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.484;DP=157;Dels=0.00;FS=7.969;HaplotypeScore=13.1564;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.195;QD=23.73;ReadPosRankSum=3.794;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:5,152:157:99:3726,396,0 chrXII 113367 . G A 5461.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.38;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5461,568,0 chrXII 113451 . T A 5498.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=25.11;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5498,571,0 chrXII 113494 . A G 4942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.3383;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.962;QD=21.58;ReadPosRankSum=1.670;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:1,225:229:99:4942,534,0 chrXII 113564 . T C 4775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=206;Dels=0.00;FS=7.905;HaplotypeScore=17.8377;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.913;QD=23.18;ReadPosRankSum=2.401;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:2,201:206:99:4775,502,0 chrXII 113660 . A G 4674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.0509;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.101;QD=22.69;ReadPosRankSum=2.401;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,202:206:99:4674,487,0 chrXII 113673 . G C 4517.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=23.53;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4517,475,0 chrXII 113758 . T C 3498.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.70;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3498,366,0 chrXII 113832 . T A 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=149;Dels=0.00;FS=3.471;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.500;QD=24.30;ReadPosRankSum=1.686;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3620,384,0 chrXII 113903 . G A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.87;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3545,378,0 chrXII 114079 . T C 3081 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.49;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3114,339,0 chrXII 114214 . C T 2719 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.93;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2752,294,0 chrXII 114242 . T C 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=121;Dels=0.00;FS=3.158;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.433;QD=21.63;ReadPosRankSum=1.703;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2650,279,0 chrXII 114311 . G T 4354.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=24.19;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4354,445,0 chrXII 114330 . A G 4419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=204;Dels=0.00;FS=4.133;HaplotypeScore=7.7450;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.051;QD=21.66;ReadPosRankSum=1.681;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4419,483,0 chrXII 114529 . A G 4272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.0456;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=1.551;QD=24.41;ReadPosRankSum=2.379;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4272,451,0 chrXII 114559 . C T 5201.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.1143;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.53;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,217:221:99:5201,559,0 chrXII 114649 . T C 2542 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=146;Dels=0.01;FS=7.098;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;MQRankSum=-0.892;QD=17.41;ReadPosRankSum=2.415;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:2,140:145:99:2575,279,0 chrXII 114650 . C T 2535 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;MQRankSum=-0.577;QD=17.73;ReadPosRankSum=1.683;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:2568,276,0 chrXII 114659 . G A 2814 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6540;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=18.51;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2847,297,0 chrXII 114724 . T C 3828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.183;QD=22.52;ReadPosRankSum=1.712;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3828,405,0 chrXII 114772 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.89;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3488,366,0 chrXII 114858 . T C 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.492;QD=22.94;ReadPosRankSum=1.711;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3762,408,0 chrXII 114988 . A G 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.752;DP=152;Dels=0.00;FS=6.024;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=2.255;QD=23.85;ReadPosRankSum=2.953;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:3,147:152:99:3625,390,0 chrXII 115039 . C G 2514 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.0650;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=21.13;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2547,267,0 chrXII 115047 . C G 2429 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.41;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2462,264,0 chrXII 115108 . T C 3125 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.83;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3158,330,0 chrXII 115254 . A C 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=0.130;QD=23.00;ReadPosRankSum=1.620;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2195,231,0 chrXII 115271 . G A 2194 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=22.62;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2227,237,0 chrXII 115378 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.6761;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.15;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2511,267,0 chrXII 115400 . C T 2970 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.84;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3003,309,0 chrXII 115469 . A G 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=108;Dels=0.00;FS=9.873;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-2.176;QD=24.51;ReadPosRankSum=2.404;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2680,273,0 chrXII 115486 . C T 2248 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.83;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2281,243,0 chrXII 115512 . A G 2105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=101;Dels=0.00;FS=3.872;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=0.416;QD=20.84;ReadPosRankSum=1.663;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2138,228,0 chrXII 115585 . T A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.16;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4035,415,0 chrXII 115717 . A G 2646 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.69;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2679,285,0 chrXII 115808 . T C 2582 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.34;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2615,276,0 chrXII 115940 . C T 1887 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.74;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1920,198,0 chrXII 115948 . T C 1850 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=19.89;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1883,198,0 chrXII 116128 . A G 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=4.065;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.223;QD=24.69;ReadPosRankSum=1.698;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2576,270,0 chrXII 116314 . A G 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.246;QD=22.43;ReadPosRankSum=1.702;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2590,273,0 chrXII 116337 . C T 2525 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.15;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2558,264,0 chrXII 116387 . A G 1872 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.50;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1905,204,0 chrXII 116402 . T A 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=1.106;QD=19.59;ReadPosRankSum=1.695;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1874,192,0 chrXII 116497 . A T 3570.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=26.25;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3570,372,0 chrXII 116524 . A C 2796 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=21.51;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2829,306,0 chrXII 116680 . T C 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=180;Dels=0.00;FS=3.720;HaplotypeScore=8.4741;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.203;QD=22.02;ReadPosRankSum=1.713;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3963,418,0 chrXII 116686 . T C 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.0314;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=1.425;QD=20.85;ReadPosRankSum=2.309;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3670,384,0 chrXII 116824 . T G 3647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=157;Dels=0.00;FS=10.173;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.452;QD=23.23;ReadPosRankSum=2.942;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:3647,396,0 chrXII 116980 . G A 4149.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.9279;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.70;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4149,444,0 chrXII 117391 . G C 3117 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.09;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3150,339,0 chrXII 117460 . C T 3432.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=21.86;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3432,363,0 chrXII 117481 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=20.48;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3228,342,0 chrXII 117484 . C A 3180 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=20.65;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3213,328,0 chrXII 117532 . C T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=17.4320;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.32;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3455,360,0 chrXII 117788 . T C 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=4.696;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.448;QD=23.56;ReadPosRankSum=1.631;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4076,427,0 chrXII 117856 . T C 3391.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3391,363,0 chrXII 117952 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2787,300,0 chrXII 118322 . A G 4264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=208;Dels=0.00;FS=3.673;HaplotypeScore=12.1729;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-1.495;QD=20.50;ReadPosRankSum=1.648;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:1,204:208:99:4264,454,0 chrXII 118337 . G A 4847.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.74;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4847,517,0 chrXII 118486 . T C 4749.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.8693;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.63;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4749,505,0 chrXII 118640 . G A 5397.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.67;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5397,553,0 chrXII 118665 . C T 4554.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.32;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4554,480,0 chrXII 119291 . A G 4012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.234;QD=23.88;ReadPosRankSum=1.649;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:4012,429,0 chrXII 119330 . A G 3993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=168;Dels=0.00;FS=2.574;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.051;QD=23.77;ReadPosRankSum=2.406;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3993,418,0 chrXII 120216 . C T 3715.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.36;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3715,382,0 chrXII 120529 . T C 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=154;Dels=0.00;FS=5.997;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.105;QD=23.06;ReadPosRankSum=2.889;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3551,378,0 chrXII 120550 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.07;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4038,426,0 chrXII 120592 . A G 4222.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.99;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4222,450,0 chrXII 121206 . T G 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.059;QD=25.34;ReadPosRankSum=1.661;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3775,396,0 chrXII 121492 . C T 3225.28 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.36;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3258,348,0 chrXII 121537 . A G 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.661;QD=19.99;ReadPosRankSum=2.881;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2232,240,0 chrXII 121567 . T A 1834 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.1369;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.10;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1867,195,0 chrXII 121811 . T G 1250 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=24.51;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1283,135,0 chrXII 121819 . T C 1076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=0.111;QD=22.42;ReadPosRankSum=1.585;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:1,46:48:99:1109,120,0 chrXII 122034 . A C 176.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;DP=74;Dels=0.00;FS=15.329;HaplotypeScore=31.7102;MLEAC=1;MLEAF=0.500;MQ=48.82;MQ0=0;MQRankSum=0.800;QD=2.38;ReadPosRankSum=3.604;SB=-1.518e+02 GT:AD:DP:GQ:PL 0/1:35,37:74:99:206,0,210 chrXII 122098 . A G 2086 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=25.75;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:2119,222,0 chrXII 122138 . T C 1660 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.75;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1693,180,0 chrXII 122140 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=21.79;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1711,177,0 chrXII 122340 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.96;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3353,363,0 chrXII 122353 . T C 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.633;DP=168;Dels=0.00;FS=5.550;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.645;QD=21.45;ReadPosRankSum=2.958;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:4,164:168:99:3603,381,0 chrXII 122696 . G A 3153 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.9493;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.45;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3186,333,0 chrXII 122930 . A G 5114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=201;Dels=0.00;FS=10.265;HaplotypeScore=14.3081;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.973;QD=25.44;ReadPosRankSum=2.413;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:5114,541,0 chrXII 124013 . A G 4191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.461;QD=23.15;ReadPosRankSum=1.713;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:4191,462,0 chrXII 124218 . G C 5203.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=24.1941;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.82;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,223:228:99:5203,556,0 chrXII 124381 . A G 4523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=17.8528;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.384;QD=20.65;ReadPosRankSum=1.700;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4523,481,0 chrXII 124421 . T C 4763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=247;Dels=0.00;FS=6.549;HaplotypeScore=25.9170;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.075;QD=19.28;ReadPosRankSum=2.430;SB=-2.973e+03 GT:AD:DP:GQ:PL 1/1:2,244:247:99:4763,510,0 chrXII 124642 . G T 3435.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3435,358,0 chrXII 125128 . C T 3183 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.67;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3216,333,0 chrXII 125849 . T C 3930.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3930,415,0 chrXII 126014 . A G 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.992;QD=22.93;ReadPosRankSum=1.706;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3037,330,0 chrXII 126203 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.8610;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.11;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3758,411,0 chrXII 126664 . A C 5177.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.8442;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.22;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5177,558,0 chrXII 126691 . C T 4473.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.2804;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.71;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4473,457,0 chrXII 126722 . T C 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=192;Dels=0.00;FS=2.684;HaplotypeScore=13.6223;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.794;QD=21.82;ReadPosRankSum=2.385;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4190,447,0 chrXII 126934 . C T 5064.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=16.5787;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.02;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5064,544,0 chrXII 127006 . G A 6193.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=13.4615;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.19;SB=-3.098e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:6193,661,0 chrXII 127219 . G A 2739 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7278;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.91;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2772,297,0 chrXII 127234 . A G 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.327;QD=21.82;ReadPosRankSum=2.410;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2760,291,0 chrXII 127342 . C T 887 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.03;FS=0.000;HaplotypeScore=11.3747;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=11.52;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:920,108,0 chrXII 127407 . A T 1996 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.8381;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.01;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2029,213,0 chrXII 127478 . C T 2356 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.87;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2389,252,0 chrXII 127487 . T C 2470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.770;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-0.171;QD=20.93;ReadPosRankSum=2.889;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2503,264,0 chrXII 127531 . T C 2726 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.16;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2759,297,0 chrXII 129090 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=22.81;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1128,114,0 chrXII 129226 . G A 109.26 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=3.31;SB=-1.653e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:15:142,15,0 chrXII 129764 . A G 4634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=184;Dels=0.00;FS=4.236;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.729;QD=25.18;ReadPosRankSum=1.694;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4634,484,0 chrXII 130209 . A G 6168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.386;DP=302;Dels=0.00;FS=8.755;HaplotypeScore=17.0491;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.115;QD=20.42;ReadPosRankSum=3.381;SB=-3.730e+03 GT:AD:DP:GQ:PL 1/1:4,298:302:99:6168,652,0 chrXII 130405 . C G 6112.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=10.5288;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=23.78;SB=-3.377e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:6112,664,0 chrXII 130729 . C T 6019.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.70;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6019,646,0 chrXII 131340 . A G 4826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=4.572;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.162;QD=25.01;ReadPosRankSum=1.660;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4826,511,0 chrXII 131532 . T C 4551.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.4322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4551,478,0 chrXII 132253 . G A 1743 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.545;DP=201;Dels=0.00;FS=4.350;HaplotypeScore=143.5418;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-2.491;QD=8.67;ReadPosRankSum=-10.123;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:67,130:200:99:1776,186,0 chrXII 132256 . G A 677.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.734;DP=203;Dels=0.00;FS=13.696;HaplotypeScore=148.4656;MLEAC=1;MLEAF=0.500;MQ=51.86;MQ0=0;MQRankSum=-0.980;QD=3.34;ReadPosRankSum=-3.572;SB=-3.530e+02 GT:AD:DP:GQ:PL 0/1:144,58:202:99:707,0,1858 chrXII 132260 . A G 3308.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=204;Dels=0.00;FS=3.025;HaplotypeScore=150.5723;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=-0.699;QD=16.22;ReadPosRankSum=2.425;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:3308,357,0 chrXII 134108 . T G 233 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-1.317e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:30:266,30,0 chrXII 134351 . T C 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.196;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.397;QD=23.71;ReadPosRankSum=2.377;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1645,174,0 chrXII 134767 . A G 5601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.246;DP=239;Dels=0.00;FS=12.454;HaplotypeScore=21.3204;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.048;QD=23.44;ReadPosRankSum=3.313;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:4,232:239:99:5601,592,0 chrXII 135031 . G A 4449.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.8431;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.92;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4449,480,0 chrXII 136315 . T C 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=181;Dels=0.00;FS=3.745;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.982;QD=22.97;ReadPosRankSum=1.674;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4158,433,0 chrXII 138124 . G C 3136 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.94;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3169,333,0 chrXII 138153 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=17.73;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2373,243,0 chrXII 138154 . C T 2323 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=17.60;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2356,243,0 chrXII 139383 . A C 2069 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.06;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2102,225,0 chrXII 141135 . C T 5163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=16.8569;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.330;QD=24.70;ReadPosRankSum=-0.921;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:1,204:209:99:5163,529,0 chrXII 141390 . C T 4927.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.6715;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.64;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4927,505,0 chrXII 141900 . C T 1882 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1915,201,0 chrXII 142524 . G A 2559 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2592,267,0 chrXII 143539 . C G 3279.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.8397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3279,351,0 chrXII 144379 . A G 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=123;Dels=0.00;FS=3.468;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.953;QD=22.76;ReadPosRankSum=1.674;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:1,119:123:99:2833,297,0 chrXII 144481 . A G 3707.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.05;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3707,405,0 chrXII 144822 . G A 4542.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.23;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4542,472,0 chrXII 145067 . G A 4189.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.7998;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.23;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4189,430,0 chrXII 145744 . G A 4438.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.5945;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4438,460,0 chrXII 145780 . C T 4123.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.84;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4123,436,0 chrXII 148645 . G T 3850.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3850,408,0 chrXII 151308 . C T 3302.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3302,351,0 chrXII 151453 . G C 3414.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.3564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3414,360,0 chrXII 152313 . A G 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.358;HaplotypeScore=7.8726;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.763;QD=25.52;ReadPosRankSum=1.708;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3700,390,0 chrXII 160954 . C T 3996.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.13;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3996,418,0 chrXII 162223 . C T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3647,379,0 chrXII 163451 . A G 5790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=12.5304;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.856;QD=22.02;ReadPosRankSum=1.719;SB=-3.314e+03 GT:AD:DP:GQ:PL 1/1:1,260:263:99:5790,630,0 chrXII 165469 . T C 4242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=3.277;HaplotypeScore=8.8389;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.268;QD=25.10;ReadPosRankSum=1.711;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:4242,450,0 chrXII 168352 . G A 3461.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3461,355,0 chrXII 170546 . T C 2832 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.82;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,132:136:99:2865,309,0 chrXII 173005 . C T 3092 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.77;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3125,318,0 chrXII 173892 . A T 4353.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.46;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4353,457,0 chrXII 174523 . T C 4891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=209;Dels=0.00;FS=3.019;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.172;QD=23.40;ReadPosRankSum=2.378;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:2,205:209:99:4891,520,0 chrXII 177188 . T C 5625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=263;Dels=0.00;FS=3.707;HaplotypeScore=17.6063;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.008;QD=21.39;ReadPosRankSum=1.679;SB=-2.909e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:5625,607,0 chrXII 177778 . C T 4668.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.7130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4668,499,0 chrXII 179902 . T C 1487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.407;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.245;QD=23.23;ReadPosRankSum=1.678;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1520,162,0 chrXII 183090 . C T 3884.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.58;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3884,411,0 chrXII 186045 . T C 5723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.367;QD=23.95;ReadPosRankSum=1.717;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:1,235:239:99:5723,624,0 chrXII 187694 . C T 5743.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=9.5956;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5743,592,0 chrXII 190353 . T C 5892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=237;Dels=0.00;FS=2.843;HaplotypeScore=12.4152;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.026;QD=24.86;ReadPosRankSum=2.418;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:2,233:237:99:5892,637,0 chrXII 190554 . A G 6817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.412;DP=284;Dels=0.00;FS=8.624;HaplotypeScore=16.7518;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.592;QD=24.00;ReadPosRankSum=3.406;SB=-3.490e+03 GT:AD:DP:GQ:PL 1/1:4,280:284:99:6817,721,0 chrXII 191926 . C T 2989 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.77;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3022,310,0 chrXII 194277 . T C 4183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=3.085;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.019;QD=23.77;ReadPosRankSum=1.673;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4183,444,0 chrXII 194407 . T C 4316.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.4753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4316,459,0 chrXII 195525 . C T 2091 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.19;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2124,222,0 chrXII 196695 . C T 1124 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.84;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1157,123,0 chrXII 196845 . A G 2178 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=19.80;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2211,231,0 chrXII 196849 . T C 2144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.716;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-0.354;QD=18.32;ReadPosRankSum=2.940;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2177,231,0 chrXII 196991 . T C 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.051;QD=24.61;ReadPosRankSum=1.691;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4159,439,0 chrXII 197186 . G C 5937.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=19.3990;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.83;SB=-3.417e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5937,645,0 chrXII 197459 . C T 5563.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=14.2814;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.40;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:5563,580,0 chrXII 198501 . C T 3083 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:3116,327,0 chrXII 198637 . A C 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-1.155;QD=19.28;ReadPosRankSum=1.674;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2366,258,0 chrXII 198638 . G A 2414 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.12;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2447,261,0 chrXII 199043 . A G 4882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=236;Dels=0.00;FS=2.948;HaplotypeScore=14.2367;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.327;QD=20.69;ReadPosRankSum=2.366;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:2,232:236:99:4882,534,0 chrXII 200350 . A G 5656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=234;Dels=0.00;FS=11.362;HaplotypeScore=13.2322;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.711;QD=24.17;ReadPosRankSum=2.935;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:3,230:234:99:5656,607,0 chrXII 200465 . C T 4922.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.0171;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.47;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4922,514,0 chrXII 201288 . A G 4703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.8715;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.250;QD=23.28;ReadPosRankSum=1.698;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4703,502,0 chrXII 203413 . G T 3824.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.36;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3824,388,0 chrXII 204141 . A G 4567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=3.793;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=61.04;MQ0=0;MQRankSum=-1.389;QD=24.96;ReadPosRankSum=1.713;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4567,478,0 chrXII 212271 . A G 4321.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.35;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4321,457,0 chrXII 213996 . A G 3587.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.91;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3587,387,0 chrXII 215089 . T C 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.17;MQ0=0;QD=3.49;SB=-2.780e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:45,6,0 chrXII 215091 . T G 54.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.17;MQ0=0;MQRankSum=0.727;QD=13.74;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,3:4:9:87,9,0 chrXII 221004 . C T 80.26 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=2.9838;MLEAC=2;MLEAF=1.00;MQ=40.82;MQ0=0;QD=5.35;SB=-2.718e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:113,15,0 chrXII 221190 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.6534;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=21.77;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3212,339,0 chrXII 221264 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=23.90;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3274,345,0 chrXII 223258 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3291,351,0 chrXII 223521 . G T 4518.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.38;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4518,466,0 chrXII 226438 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3448,363,0 chrXII 226560 . T C 3771.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.8466;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.45;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3771,405,0 chrXII 226577 . C G 3608.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.48;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3608,381,0 chrXII 227353 . T C 2196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.072;QD=22.64;ReadPosRankSum=1.696;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2229,237,0 chrXII 228284 . T C 4559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=178;Dels=0.00;FS=2.422;HaplotypeScore=9.9333;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.881;QD=25.61;ReadPosRankSum=2.893;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:4559,484,0 chrXII 228807 . C T 458 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.08;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:51:491,51,0 chrXII 229358 . G T 5536.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=16.5922;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.86;SB=-3.002e+03 GT:AD:DP:GQ:PL 1/1:1,229:232:99:5536,571,0 chrXII 231281 . A T 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=3.780;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.637;QD=22.65;ReadPosRankSum=1.614;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2683,279,0 chrXII 234144 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3760,388,0 chrXII 234177 . C G 2801 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2834,300,0 chrXII 234378 . G C 3067 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.59;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3100,339,0 chrXII 234472 . G A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.68;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3653,387,0 chrXII 234505 . A G 4454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=180;Dels=0.00;FS=3.812;HaplotypeScore=12.4293;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.382;QD=24.74;ReadPosRankSum=1.713;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:4454,474,0 chrXII 234548 . C T 4685.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=25.88;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4685,481,0 chrXII 234694 . T C 4380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.315;QD=24.89;ReadPosRankSum=1.712;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4380,465,0 chrXII 234767 . G A 4880.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.5007;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=25.42;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4880,511,0 chrXII 234822 . T C 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=190;Dels=0.00;FS=2.939;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-0.368;QD=19.27;ReadPosRankSum=2.346;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3662,399,0 chrXII 234824 . C T 3957.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=21.05;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3957,406,0 chrXII 234859 . A G 4458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=214;Dels=0.00;FS=3.693;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=1.065;QD=20.83;ReadPosRankSum=1.700;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4458,475,0 chrXII 235332 . G A 5247.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.05;SB=-3.161e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5247,538,0 chrXII 235352 . C T 6101.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=5.8943;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.11;SB=-3.568e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:6101,631,0 chrXII 235798 . C T 4284.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4284,442,0 chrXII 235891 . G A 4390.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.75;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4390,445,0 chrXII 235940 . G C 3568.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.7801;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.87;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3568,378,0 chrXII 236045 . A G 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.691;DP=143;Dels=0.00;FS=6.018;HaplotypeScore=13.7361;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.230;QD=21.97;ReadPosRankSum=2.864;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:3,137:143:99:3175,345,0 chrXII 236123 . G A 4338.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0417;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4338,465,0 chrXII 236237 . T C 4346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.379;DP=192;Dels=0.00;FS=2.636;HaplotypeScore=15.5997;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.498;QD=22.64;ReadPosRankSum=1.897;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4346,465,0 chrXII 236611 . T A 3482.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.53;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3482,358,0 chrXII 236638 . G A 3322.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.16;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3322,340,0 chrXII 236662 . G A 3555.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.36;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3555,364,0 chrXII 237080 . G A 4644.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4644,481,0 chrXII 237225 . G A 4798.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.61;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4798,490,0 chrXII 237608 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.0673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4034,415,0 chrXII 237728 . A G 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.4435;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.648;QD=21.22;ReadPosRankSum=1.676;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2685,285,0 chrXII 237814 . C T 3045 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.60;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3078,333,0 chrXII 237951 . T A 2473 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.98;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2506,261,0 chrXII 237982 . T C 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=1.600;QD=24.31;ReadPosRankSum=1.699;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2586,276,0 chrXII 238074 . A G 3107 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.8746;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=25.06;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,121:124:99:3140,333,0 chrXII 238148 . A G 2861 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.54;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2894,309,0 chrXII 238192 . G A 2810 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.65;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2843,297,0 chrXII 238301 . C T 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=151;Dels=0.00;FS=8.926;HaplotypeScore=11.2426;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.598;QD=21.68;ReadPosRankSum=2.155;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3274,337,0 chrXII 238303 . T C 3181 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.07;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3214,339,0 chrXII 238370 . G A 3180 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.56;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3213,339,0 chrXII 238466 . A G 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=147;Dels=0.00;FS=8.750;HaplotypeScore=9.5309;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.463;QD=23.12;ReadPosRankSum=2.282;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3399,369,0 chrXII 238667 . C T 4021.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.0372;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.98;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4021,432,0 chrXII 238758 . G A 4054.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.4639;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.57;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4054,441,0 chrXII 238919 . G C 3475.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.28;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3475,372,0 chrXII 238970 . C T 4252.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.02;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4252,453,0 chrXII 239098 . C G 3459.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.36;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3459,375,0 chrXII 239186 . A G 2438 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1542;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.77;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2471,270,0 chrXII 239575 . G C 4187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.107;DP=195;Dels=0.00;FS=3.847;HaplotypeScore=17.9381;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.661;QD=21.47;ReadPosRankSum=1.625;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4187,442,0 chrXII 239804 . C T 4059.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.88;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4059,424,0 chrXII 239896 . T A 2936 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2969,312,0 chrXII 240031 . G A 3723.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.98;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3723,399,0 chrXII 240159 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.9291;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.45;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3377,345,0 chrXII 240627 . G A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.44;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3485,369,0 chrXII 240793 . G A 5028.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.7043;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.27;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5028,517,0 chrXII 241160 . T C 3579.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.4312;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3579,390,0 chrXII 241422 . T C 2269 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2302,249,0 chrXII 241720 . T C 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=3.185;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.068;QD=22.77;ReadPosRankSum=1.705;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2925,315,0 chrXII 241757 . A G 3880.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.4036;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.37;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3880,408,0 chrXII 241859 . T C 4125.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.7397;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.98;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4125,438,0 chrXII 241905 . A G 4272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.406;DP=165;Dels=0.00;FS=19.088;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.588;QD=25.89;ReadPosRankSum=3.364;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:4,161:165:99:4272,451,0 chrXII 242067 . A G 4539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.303;QD=22.47;ReadPosRankSum=1.715;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4539,492,0 chrXII 242101 . C G 4056.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.6952;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.57;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:4056,438,0 chrXII 242737 . T C 4409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.936;QD=25.34;ReadPosRankSum=1.672;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4409,471,0 chrXII 242983 . G A 4418.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=17.6235;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4418,454,0 chrXII 243426 . C T 931 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=16.93;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,54:55:99:964,108,0 chrXII 243642 . C A 169.06 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.78;SB=-8.681e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:21:202,21,0 chrXII 243663 . A G 167.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.15;MQ0=0;QD=16.71;SB=-1.109e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:200,21,0 chrXII 243690 . C G 184.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.15;MQ0=0;QD=18.41;SB=-1.159e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:217,21,0 chrXII 243694 . A G 166.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.15;MQ0=0;QD=16.61;SB=-1.139e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:199,21,0 chrXII 243704 . A T 112.26 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=14.03;SB=-1.118e+02 GT:AD:DP:GQ:PL 1/1:0,8:8:15:145,15,0 chrXII 243705 . T C 103.26 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=12.91;SB=-1.058e+02 GT:AD:DP:GQ:PL 1/1:0,8:8:15:136,15,0 chrXII 243711 . G A 84.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.97;MQ0=0;QD=9.39;SB=-8.626e+01 GT:AD:DP:GQ:PL 1/1:0,8:9:12:117,12,0 chrXII 243795 . T C 555 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.12;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:63:588,63,0 chrXII 243937 . A G 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=9.322;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=1.282;QD=24.35;ReadPosRankSum=1.687;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1932,216,0 chrXII 244131 . A G 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=149;Dels=0.00;FS=6.721;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.981;QD=24.47;ReadPosRankSum=2.417;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3646,384,0 chrXII 244156 . T C 3122 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.5075;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.99;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3155,342,0 chrXII 244378 . C T 3679.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.58;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3679,373,0 chrXII 244405 . C A 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.392;DP=137;Dels=0.00;FS=3.042;HaplotypeScore=2.7781;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.505;QD=23.10;ReadPosRankSum=-0.771;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3198,336,0 chrXII 244615 . G A 2632 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.69;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2665,276,0 chrXII 244672 . G A 3783.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.91;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3783,391,0 chrXII 244708 . T C 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=152;Dels=0.00;FS=2.579;HaplotypeScore=9.5002;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-2.060;QD=24.67;ReadPosRankSum=2.887;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:4,148:152:99:3750,405,0 chrXII 244993 . G A 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=167;Dels=0.00;FS=3.654;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.691;QD=24.96;ReadPosRankSum=0.114;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4168,427,0 chrXII 245489 . A G 5187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=211;Dels=0.00;FS=7.642;HaplotypeScore=14.8239;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-1.521;QD=24.58;ReadPosRankSum=2.403;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:2,207:211:99:5187,553,0 chrXII 245635 . C T 4592.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.09;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4592,484,0 chrXII 245789 . G T 5078.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.7969;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.17;SB=-3.018e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5078,523,0 chrXII 245823 . T C 5821.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=11.2680;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.05;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5821,619,0 chrXII 246098 . G C 3394.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=16.5322;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.45;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3394,357,0 chrXII 246210 . G A 168.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.399;DP=124;Dels=0.01;FS=4.074;HaplotypeScore=115.1293;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.234;QD=1.36;ReadPosRankSum=-5.926;SB=-8.065e+00 GT:AD:DP:GQ:PL 1/1:104,17:123:21:201,21,0 chrXII 246274 . C T 2820 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.70;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2853,309,0 chrXII 246315 . T A 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.5468;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.341;QD=25.11;ReadPosRankSum=1.682;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3465,375,0 chrXII 246480 . C T 4837.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.2160;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.43;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4837,499,0 chrXII 246534 . A G 5971.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=13.3681;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.88;SB=-2.923e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5971,640,0 chrXII 246582 . T A 5821.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=8.1614;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.76;SB=-2.938e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5821,622,0 chrXII 246698 . T A 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=188;Dels=0.00;FS=8.374;HaplotypeScore=12.0037;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=2.175;QD=21.75;ReadPosRankSum=2.058;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4089,438,0 chrXII 246798 . C T 4439.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=4.3613;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=19.64;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4439,457,0 chrXII 246804 . A G 4243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=221;Dels=0.00;FS=2.965;HaplotypeScore=4.8145;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.428;QD=19.20;ReadPosRankSum=2.394;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:4243,447,0 chrXII 246852 . A G 4031.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.57;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4031,444,0 chrXII 246908 . A C 3900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=172;Dels=0.00;FS=3.440;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=1.141;QD=22.67;ReadPosRankSum=1.712;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3900,411,0 chrXII 246916 . A G 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=170;Dels=0.00;FS=7.842;HaplotypeScore=6.0809;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-0.728;QD=21.99;ReadPosRankSum=2.391;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:2,165:170:99:3739,405,0 chrXII 247009 . A C 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.217;QD=23.60;ReadPosRankSum=1.691;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3965,423,0 chrXII 247140 . T C 4274.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.98;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4274,453,0 chrXII 247320 . A G 4885.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=24.67;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4885,520,0 chrXII 247374 . T C 4995.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=3.4229;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=19.29;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:4995,538,0 chrXII 247377 . C T 5071.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=19.28;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:5071,529,0 chrXII 247393 . T C 4791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=266;Dels=0.00;FS=2.964;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-0.946;QD=18.01;ReadPosRankSum=2.422;SB=-3.393e+03 GT:AD:DP:GQ:PL 1/1:2,264:266:99:4791,505,0 chrXII 247449 . G A 4555.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=8.1139;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=18.82;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:4555,486,0 chrXII 247740 . A G 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=185;Dels=0.00;FS=5.851;HaplotypeScore=9.7586;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.885;QD=22.92;ReadPosRankSum=2.940;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:3,180:185:99:4241,462,0 chrXII 247896 . T C 2679 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5528;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.26;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2712,288,0 chrXII 247920 . T C 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=3.499;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=-0.086;QD=18.80;ReadPosRankSum=1.634;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2702,291,0 chrXII 247930 . G C 2721 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=18.77;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2754,300,0 chrXII 247958 . A T 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=187;Dels=0.00;FS=3.128;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-1.732;QD=19.83;ReadPosRankSum=1.695;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3709,384,0 chrXII 248056 . A C 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.767;DP=178;Dels=0.00;FS=5.837;HaplotypeScore=9.8615;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.313;QD=21.86;ReadPosRankSum=2.926;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:3,174:178:99:3891,423,0 chrXII 248269 . C T 4061.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.17;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4061,412,0 chrXII 248314 . C G 4004.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.12;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:4004,429,0 chrXII 248477 . G C 3848.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=24.35;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3848,408,0 chrXII 248515 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=104.6115;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=22.61;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3324,351,0 chrXII 248559 . G T 3417.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.24;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3417,352,0 chrXII 248615 . A G 3578.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=22.79;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3578,378,0 chrXII 248656 . G T 2879 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7469;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=20.86;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,133:138:99:2912,300,0 chrXII 248752 . A G 3686.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.18;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3686,396,0 chrXII 248843 . C G 4468.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.5857;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.42;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4468,477,0 chrXII 249052 . A C 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.635;DP=186;Dels=0.00;FS=7.874;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.434;QD=19.58;ReadPosRankSum=3.746;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:5,179:186:99:3641,396,0 chrXII 249539 . G A 4821.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.42;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4821,522,0 chrXII 249558 . A G 4533.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.22;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4533,486,0 chrXII 249616 . T G 3884.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.34;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3884,429,0 chrXII 249635 . A G 4276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.341;DP=194;Dels=0.00;FS=13.033;HaplotypeScore=5.8796;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-2.016;QD=22.04;ReadPosRankSum=3.332;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:4,187:194:99:4276,451,0 chrXII 249640 . C T 4570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=199;Dels=0.00;FS=3.304;HaplotypeScore=4.3023;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.096;QD=22.96;ReadPosRankSum=-1.227;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4570,478,0 chrXII 249743 . T C 3721.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.8012;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.45;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3721,396,0 chrXII 249899 . A G 3937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=172;Dels=0.00;FS=2.652;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=1.321;QD=22.89;ReadPosRankSum=2.407;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3937,415,0 chrXII 250337 . C G 4766.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.5903;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=22.17;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4766,514,0 chrXII 250359 . C T 5104.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.8225;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.58;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5104,532,0 chrXII 250412 . A G 5951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=265;Dels=0.00;FS=12.862;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.555;QD=22.46;ReadPosRankSum=2.897;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:3,261:265:99:5951,625,0 chrXII 250583 . T A 6123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=288;Dels=0.00;FS=4.205;HaplotypeScore=10.0448;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.441;QD=21.26;ReadPosRankSum=1.720;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:1,286:288:99:6123,637,0 chrXII 250588 . A G 5738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=274;Dels=0.00;FS=5.401;HaplotypeScore=6.9448;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.205;QD=20.94;ReadPosRankSum=2.952;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:3,271:274:99:5738,607,0 chrXII 250697 . A G 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.087;QD=19.03;ReadPosRankSum=2.418;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3020,324,0 chrXII 250711 . G A 2991 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.07;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3024,312,0 chrXII 250891 . T A 1410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=1.029;QD=20.43;ReadPosRankSum=1.632;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1443,156,0 chrXII 250979 . A T 2418 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=24.93;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2451,258,0 chrXII 251868 . T C 4904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=245;Dels=0.00;FS=9.412;HaplotypeScore=15.7933;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.041;QD=20.02;ReadPosRankSum=2.955;SB=-3.191e+03 GT:AD:DP:GQ:PL 1/1:3,241:245:99:4904,517,0 chrXII 252448 . T C 6324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.230;DP=265;Dels=0.00;FS=2.404;HaplotypeScore=20.6412;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.921;QD=23.86;ReadPosRankSum=3.402;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:4,260:265:99:6324,679,0 chrXII 252615 . T G 7700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.286;DP=347;Dels=0.00;FS=12.321;HaplotypeScore=29.3427;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;MQRankSum=1.787;QD=22.19;ReadPosRankSum=3.401;SB=-4.209e+03 GT:AD:DP:GQ:PL 1/1:4,342:347:99:7700,841,0 chrXII 252766 . T A 564 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=497;Dels=0.00;FS=2.621;HaplotypeScore=325.0774;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;MQRankSum=-1.454;QD=1.13;ReadPosRankSum=2.415;SB=-4.585e+03 GT:AD:DP:GQ:PL 1/1:2,494:497:66:597,66,0 chrXII 252808 . C T 3951.01 filter AC=2;AF=1.00;AN=2;DP=506;Dels=0.00;FS=0.000;HaplotypeScore=5.6855;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=0;QD=7.81;SB=-4.490e+03 GT:AD:DP:GQ:PL 1/1:0,506:506:99:3951,409,0 chrXII 252815 . T C 3649.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=496;Dels=0.00;FS=2.562;HaplotypeScore=7.2629;MLEAC=2;MLEAF=1.00;MQ=35.08;MQ0=0;MQRankSum=-0.440;QD=7.36;ReadPosRankSum=2.986;SB=-4.610e+03 GT:AD:DP:GQ:PL 1/1:3,493:496:99:3649,390,0 chrXII 253274 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.637;DP=169;Dels=0.00;FS=5.816;HaplotypeScore=23.7651;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.851;QD=19.35;ReadPosRankSum=2.959;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3270,354,0 chrXII 253806 . T C 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.246;DP=148;Dels=0.00;FS=14.525;HaplotypeScore=19.8315;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.585;QD=20.80;ReadPosRankSum=3.352;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:4,144:148:99:3111,330,0 chrXII 254321 . T C 7959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.714;DP=332;Dels=0.00;FS=12.116;HaplotypeScore=21.9526;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.291;QD=23.97;ReadPosRankSum=3.812;SB=-4.298e+03 GT:AD:DP:GQ:PL 1/1:5,327:332:99:7959,838,0 chrXII 254691 . A G 7856.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.529;DP=370;Dels=0.00;FS=10.980;HaplotypeScore=22.4304;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.417;QD=21.23;ReadPosRankSum=2.736;SB=-3.938e+03 GT:AD:DP:GQ:PL 1/1:3,365:370:99:7856,867,0 chrXII 254994 . C T 3071 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=16.0341;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.18;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3104,316,0 chrXII 255134 . T C 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=120;Dels=0.00;FS=2.667;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.486;QD=22.51;ReadPosRankSum=2.388;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2734,294,0 chrXII 255736 . T C 4385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=224;Dels=0.00;FS=4.472;HaplotypeScore=5.9881;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.696;QD=19.58;ReadPosRankSum=1.670;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:4385,471,0 chrXII 256166 . T C 4058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.8414;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.188;QD=24.74;ReadPosRankSum=2.389;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:4058,432,0 chrXII 256202 . T C 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-0.144;QD=22.87;ReadPosRankSum=2.326;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4094,441,0 chrXII 256217 . T G 3977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-1.351;QD=21.85;ReadPosRankSum=1.713;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3977,415,0 chrXII 256226 . T C 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=0.645;QD=20.97;ReadPosRankSum=1.677;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3943,426,0 chrXII 256392 . C G 3837.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.44;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,173:179:99:3837,405,0 chrXII 256508 . A G 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=154;Dels=0.00;FS=2.979;HaplotypeScore=5.8554;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=-0.694;QD=21.80;ReadPosRankSum=2.386;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3357,366,0 chrXII 256525 . A G 2798 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.9667;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=20.57;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2831,303,0 chrXII 256528 . A G 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=133;Dels=0.00;FS=6.030;HaplotypeScore=1.9667;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=0.265;QD=20.86;ReadPosRankSum=2.902;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2807,291,0 chrXII 256592 . C T 2438 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.20;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2471,261,0 chrXII 256650 . G A 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.270;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.552;QD=24.55;ReadPosRankSum=0.783;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3314,334,0 chrXII 256727 . T C 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=96;Dels=0.00;FS=7.240;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=0.449;QD=19.93;ReadPosRankSum=2.398;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1946,210,0 chrXII 256737 . A G 2036 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=20.78;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2069,225,0 chrXII 256826 . T C 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.467;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.203;QD=24.04;ReadPosRankSum=1.710;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3775,384,0 chrXII 257091 . G C 4122.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.2643;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.03;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4122,444,0 chrXII 257200 . C T 4095.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.7008;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.75;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4095,424,0 chrXII 257316 . G T 4545.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.8168;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.43;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4545,466,0 chrXII 257334 . A G 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=185;Dels=0.00;FS=3.129;HaplotypeScore=6.5470;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.234;QD=21.46;ReadPosRankSum=1.601;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3970,415,0 chrXII 257366 . T A 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=184;Dels=0.00;FS=3.034;HaplotypeScore=9.6721;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.836;QD=21.07;ReadPosRankSum=2.316;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3877,403,0 chrXII 257504 . A G 4372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=194;Dels=0.00;FS=2.682;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.538;QD=22.54;ReadPosRankSum=2.374;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4372,468,0 chrXII 257654 . A G 4508.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.1858;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.37;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4508,483,0 chrXII 257917 . T C 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=173;Dels=0.00;FS=7.155;HaplotypeScore=11.8565;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.490;QD=23.32;ReadPosRankSum=2.420;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:2,166:173:99:4035,438,0 chrXII 258268 . G A 3802.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.8368;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3802,394,0 chrXII 258928 . G A 4507.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=18.2785;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.54;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4507,472,0 chrXII 259051 . C T 4409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.161;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=16.9472;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.036;QD=22.73;ReadPosRankSum=1.661;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4409,437,0 chrXII 259210 . G A 5799.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=17.6736;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.06;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5799,595,0 chrXII 259471 . G T 4386.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.10;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4386,465,0 chrXII 259762 . C G 3468.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=13.5199;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;QD=24.60;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3468,375,0 chrXII 260002 . G C 7505.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=22.3320;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.09;SB=-3.427e+03 GT:AD:DP:GQ:PL 1/1:0,317:325:99:7505,802,0 chrXII 260116 . G T 8893.01 filter AC=2;AF=1.00;AN=2;DP=367;Dels=0.00;FS=0.000;HaplotypeScore=18.7318;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.23;SB=-3.112e+03 GT:AD:DP:GQ:PL 1/1:0,366:367:99:8893,931,0 chrXII 260197 . A G 8150.01 filter AC=2;AF=1.00;AN=2;DP=386;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.11;SB=-4.763e+03 GT:AD:DP:GQ:PL 1/1:0,380:386:99:8150,883,0 chrXII 260220 . T C 8599.01 filter AC=2;AF=1.00;AN=2;DP=410;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.97;SB=-5.354e+03 GT:AD:DP:GQ:PL 1/1:0,408:410:99:8599,916,0 chrXII 260496 . G A 5387.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=23.2126;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.63;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5387,565,0 chrXII 260593 . C T 242 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=119.5732;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=1.60;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:33:275,33,0 chrXII 261030 . A G 4292.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.9987;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.90;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4292,454,0 chrXII 261053 . T C 4655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=218;Dels=0.00;FS=5.303;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.162;QD=21.35;ReadPosRankSum=2.968;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:3,214:218:99:4655,507,0 chrXII 261101 . G A 5398.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.6855;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.37;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5398,553,0 chrXII 262367 . G A 4202.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.57;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4202,444,0 chrXII 262607 . C T 2512 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.66;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2545,261,0 chrXII 262933 . T C 1383 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=24.70;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1416,153,0 chrXII 262942 . T A 1196 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.57;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1229,123,0 chrXII 263076 . T C 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.265;QD=21.93;ReadPosRankSum=1.177;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2577,279,0 chrXII 263103 . C T 2012 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.53;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2045,219,0 chrXII 263142 . G C 2038 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.01;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,94:97:99:2071,219,0 chrXII 263151 . C T 2145 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=22.58;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2178,225,0 chrXII 263230 . C T 2799 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=24.13;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2832,297,0 chrXII 263279 . A G 2062 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.3425;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.62;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2095,228,0 chrXII 263502 . G A 2067 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.2686;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.90;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2100,213,0 chrXII 264124 . T C 410 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:48:443,48,0 chrXII 264597 . C A 4435.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.8174;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.24;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4435,471,0 chrXII 264903 . C T 4342.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.39;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:4342,436,0 chrXII 264939 . A G 4230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=17.3832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.106;QD=23.90;ReadPosRankSum=1.673;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4230,453,0 chrXII 265134 . A G 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.704;QD=22.87;ReadPosRankSum=1.678;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2960,318,0 chrXII 265286 . C G 3479.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.83;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,141:146:99:3479,369,0 chrXII 265971 . G A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.81;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3721,385,0 chrXII 266094 . A G 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.495;QD=24.00;ReadPosRankSum=1.637;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3504,369,0 chrXII 266148 . G A 2512 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.26;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2545,261,0 chrXII 266577 . T C 4165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=4.567;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.417;QD=24.94;ReadPosRankSum=1.711;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:4165,436,0 chrXII 266628 . T G 3974.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.24;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3974,423,0 chrXII 266739 . C T 4742.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.6376;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=25.22;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4742,493,0 chrXII 266889 . A G 2829 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=-0.047;QD=19.11;ReadPosRankSum=1.709;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2862,309,0 chrXII 266895 . T C 2696 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=4.180;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;MQRankSum=-1.371;QD=18.47;ReadPosRankSum=1.708;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:2729,291,0 chrXII 266899 . C T 2804 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=17.64;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2837,291,0 chrXII 266945 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=16.35;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3254,331,0 chrXII 266966 . C T 2479 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=14.58;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2512,273,0 chrXII 266973 . G A 2402 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.2746;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=14.38;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2435,261,0 chrXII 267357 . A G 4162.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.5877;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.62;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4162,450,0 chrXII 267477 . T C 4225.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4225,447,0 chrXII 268559 . T C 2587 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.69;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2620,279,0 chrXII 268599 . G A 1501 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.28;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1534,162,0 chrXII 268605 . C T 1601 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.79;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1634,165,0 chrXII 268614 . C T 1528 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.22;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1561,162,0 chrXII 268836 . C T 2091 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=24.31;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2124,216,0 chrXII 269037 . T A 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=145;Dels=0.00;FS=2.601;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=1.483;QD=20.88;ReadPosRankSum=2.297;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3060,327,0 chrXII 269053 . G T 2864 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=20.75;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2897,292,0 chrXII 269058 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=19.58;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2852,303,0 chrXII 269215 . A C 4575.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.6166;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.99;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4575,484,0 chrXII 269349 . G A 4467.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=22.56;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4467,457,0 chrXII 269358 . C T 4554.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.8672;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.69;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4554,472,0 chrXII 269565 . A G 6517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.327;DP=275;Dels=0.00;FS=13.406;HaplotypeScore=12.8294;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.463;QD=23.70;ReadPosRankSum=3.397;SB=-3.291e+03 GT:AD:DP:GQ:PL 1/1:4,269:275:99:6517,714,0 chrXII 270839 . A G 2309 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2342,252,0 chrXII 270995 . G A 4116.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4116,438,0 chrXII 271300 . A G 1989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=86;Dels=0.00;FS=2.846;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.507;QD=23.13;ReadPosRankSum=2.363;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:2,83:86:99:2022,213,0 chrXII 271394 . G A 1866 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.28;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1899,195,0 chrXII 271617 . C A 3274.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.58;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3274,342,0 chrXII 271759 . G A 5774.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=8.1614;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.36;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5774,642,0 chrXII 271885 . G A 7606.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=25.9950;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.46;SB=-3.461e+03 GT:AD:DP:GQ:PL 1/1:0,310:311:99:7606,793,0 chrXII 271960 . G T 7980.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=20.7469;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.18;SB=-4.221e+03 GT:AD:DP:GQ:PL 1/1:0,327:330:99:7980,835,0 chrXII 272263 . G T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.10;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3350,354,0 chrXII 272455 . C T 4381.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.3838;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=24.61;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4381,454,0 chrXII 272497 . C G 3989.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.79;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3989,420,0 chrXII 272572 . A G 4384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=184;Dels=0.00;FS=3.540;HaplotypeScore=14.3542;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.615;QD=23.83;ReadPosRankSum=1.694;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4384,468,0 chrXII 272708 . C A 3931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.757;DP=269;Dels=0.00;FS=44.459;HaplotypeScore=25.5568;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-0.866;QD=14.61;ReadPosRankSum=5.063;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:13,255:269:99:3931,473,0 chrXII 272710 . T C 3955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.884;DP=270;Dels=0.00;FS=15.397;HaplotypeScore=29.1149;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.148;QD=14.65;ReadPosRankSum=4.888;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:9,253:269:99:3955,476,0 chrXII 272974 . A G 6284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=25.6040;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.675;QD=22.44;ReadPosRankSum=2.379;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:2,276:280:99:6284,676,0 chrXII 273019 . T C 5690.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.55;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,262:264:99:5690,604,0 chrXII 273481 . G A 5860.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=17.5612;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.45;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:0,258:261:99:5860,604,0 chrXII 273722 . C T 3653.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.01;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3653,376,0 chrXII 273894 . A G 1293 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.85;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1326,141,0 chrXII 274027 . T C 664 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=15.81;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,41:42:72:697,72,0 chrXII 274041 . A G 521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.013;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=-0.622;QD=15.32;ReadPosRankSum=2.306;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:2,32:34:60:554,60,0 chrXII 274160 . A G 3084 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.03;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3117,321,0 chrXII 274162 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.93;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2963,315,0 chrXII 274243 . G C 4001.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.5677;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=25.01;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,157:160:99:4001,421,0 chrXII 274580 . G C 6353.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=13.7165;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-3.118e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:6353,676,0 chrXII 275113 . T C 2817 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.4899;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.02;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2850,300,0 chrXII 275215 . C T 2898 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2931,312,0 chrXII 275287 . C T 971 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.42;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:1004,105,0 chrXII 275431 . G C 3987.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.06;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3987,432,0 chrXII 275969 . C T 3941.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.78;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3941,412,0 chrXII 276049 . A G 3777.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.53;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3777,396,0 chrXII 276224 . A G 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.232;QD=23.13;ReadPosRankSum=1.690;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3816,405,0 chrXII 276235 . G A 4017.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=23.49;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4017,409,0 chrXII 276391 . T C 2887 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2920,312,0 chrXII 276631 . T G 2855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=121;Dels=0.00;FS=3.352;HaplotypeScore=8.8470;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.917;QD=23.60;ReadPosRankSum=-0.247;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2888,312,0 chrXII 276713 . C T 2821 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2854,303,0 chrXII 276795 . C T 3384.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.35;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3384,343,0 chrXII 276838 . C T 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=131;Dels=0.00;FS=4.116;HaplotypeScore=12.6929;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.309;QD=22.34;ReadPosRankSum=-1.195;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2959,309,0 chrXII 276974 . T C 3023 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.62;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3056,321,0 chrXII 277307 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.153;DP=151;Dels=0.00;FS=3.006;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.586;QD=23.58;ReadPosRankSum=2.384;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3560,378,0 chrXII 277541 . T C 3164 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.15;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3197,351,0 chrXII 277574 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=25.41;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3380,357,0 chrXII 277604 . A T 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=144;Dels=0.00;FS=3.629;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.102;QD=24.67;ReadPosRankSum=1.708;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3553,375,0 chrXII 277652 . G A 3805.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.93;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3805,400,0 chrXII 278461 . C T 4110.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.22;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4110,418,0 chrXII 278475 . T A 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.321;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.3575;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.167;QD=20.59;ReadPosRankSum=2.425;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4077,415,0 chrXII 278491 . C T 4435.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.98;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4435,474,0 chrXII 278546 . C G 4624.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=20.4333;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.64;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4624,493,0 chrXII 278861 . A G 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=151;Dels=0.00;FS=3.040;HaplotypeScore=9.7141;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.303;QD=22.45;ReadPosRankSum=2.302;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3390,363,0 chrXII 278916 . G T 4295.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.37;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4295,442,0 chrXII 279188 . G C 3181 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.07;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3214,345,0 chrXII 279218 . T C 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=207;Dels=0.00;FS=12.002;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=-1.238;QD=17.75;ReadPosRankSum=2.918;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:3674,393,0 chrXII 279224 . C T 3902.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=18.67;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:3902,397,0 chrXII 279239 . A G 3697.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=17.12;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:3697,399,0 chrXII 279272 . C T 4017.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.68;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4017,409,0 chrXII 279352 . A T 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=165;Dels=0.00;FS=9.353;HaplotypeScore=15.9758;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.494;QD=21.47;ReadPosRankSum=2.933;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3542,375,0 chrXII 279488 . C T 4725.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.0051;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=24.11;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4725,490,0 chrXII 279529 . A C 4730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=190;Dels=0.00;FS=3.680;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-1.585;QD=24.89;ReadPosRankSum=1.695;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4730,505,0 chrXII 279746 . C T 7561.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.85;SB=-3.057e+03 GT:AD:DP:GQ:PL 1/1:0,315:317:99:7561,802,0 chrXII 280198 . A G 4865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.9331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.545;QD=22.52;ReadPosRankSum=1.684;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4865,528,0 chrXII 280340 . G A 4456.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.09;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4456,460,0 chrXII 280412 . G A 5365.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-2.996e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5365,547,0 chrXII 280717 . C T 5697.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=13.4945;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.70;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,243:251:99:5697,610,0 chrXII 281178 . A C 3442.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.74;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:3442,378,0 chrXII 281289 . A G 4241.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.43;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4241,450,0 chrXII 281400 . C T 5502.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=5.6740;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.83;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5502,571,0 chrXII 281460 . T C 4707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.760;QD=24.02;ReadPosRankSum=1.644;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4707,499,0 chrXII 281816 . C T 192.03 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=33.1519;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=1.79;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,103:107:24:225,24,0 chrXII 281896 . A C 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=142;Dels=0.00;FS=7.659;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=1.584;QD=26.30;ReadPosRankSum=1.683;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3735,399,0 chrXII 282094 . G A 5117.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=23.1382;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.96;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:5117,535,0 chrXII 282215 . C T 6439.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=14.9279;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.91;SB=-3.334e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:6439,664,0 chrXII 282385 . A G 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=13.0148;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.329;QD=18.97;ReadPosRankSum=1.688;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3049,324,0 chrXII 282399 . G T 2993 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.4387;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=19.69;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3026,315,0 chrXII 282495 . A T 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=11.7103;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=0.351;QD=17.94;ReadPosRankSum=1.670;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3082,336,0 chrXII 282505 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6494;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=19.77;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2979,321,0 chrXII 282557 . A T 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.411;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=88.7178;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-1.018;QD=18.15;ReadPosRankSum=1.696;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1794,183,0 chrXII 282741 . G A 1729 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.45;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1762,183,0 chrXII 283638 . A T 710 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=19.72;SB=-3.401e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:75:743,75,0 chrXII 283645 . T A 653 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=20.41;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:72:686,72,0 chrXII 283710 . T C 1674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;MQRankSum=-0.232;QD=17.44;ReadPosRankSum=2.927;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:3,93:96:99:1707,177,0 chrXII 283719 . G A 1995 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;QD=17.50;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2028,207,0 chrXII 283731 . G A 2098 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=14.27;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,143:147:99:2131,222,0 chrXII 283746 . G T 2592 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.0253;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=15.07;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2625,276,0 chrXII 283794 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.8149;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=20.43;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3056,321,0 chrXII 284108 . G A 5735.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.13;SB=-2.913e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5735,595,0 chrXII 284270 . A G 5202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.667;QD=24.31;ReadPosRankSum=1.700;SB=-2.853e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:5202,553,0 chrXII 284594 . G A 4569.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.55;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4569,484,0 chrXII 284627 . A T 5239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=219;Dels=0.00;FS=3.153;HaplotypeScore=13.2800;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.982;QD=23.92;ReadPosRankSum=1.684;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:5239,556,0 chrXII 284763 . G A 4277.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.99;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4277,442,0 chrXII 284777 . T C 3951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=1.249;QD=22.97;ReadPosRankSum=1.692;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3951,426,0 chrXII 284813 . T C 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=3.572;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.410;QD=22.35;ReadPosRankSum=1.672;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3867,417,0 chrXII 284978 . C T 5378.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=25.37;SB=-2.762e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5378,559,0 chrXII 285077 . C T 5751.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.1102;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.22;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:5751,592,0 chrXII 285138 . C T 7893.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=29.5405;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.06;SB=-3.045e+03 GT:AD:DP:GQ:PL 1/1:0,326:328:99:7893,817,0 chrXII 286333 . T C 3396.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=21.91;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3396,357,0 chrXII 286348 . C T 3116 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=20.91;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3149,336,0 chrXII 286350 . G A 3180 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=21.63;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3213,331,0 chrXII 286729 . C T 3632.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.7521;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.13;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3632,393,0 chrXII 286816 . G T 4762.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=24.30;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4762,502,0 chrXII 286864 . T A 4540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.091;QD=24.02;ReadPosRankSum=1.695;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4540,489,0 chrXII 287005 . T C 4657.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=5.1294;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.57;SB=-2.965e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:4657,499,0 chrXII 287010 . A G 4675.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.3654;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=18.93;SB=-3.125e+03 GT:AD:DP:GQ:PL 1/1:0,244:247:99:4675,493,0 chrXII 287397 . A G 5620.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=22.21;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5620,589,0 chrXII 287409 . G A 5197.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.21;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5197,535,0 chrXII 287935 . C G 3456.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.21;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3456,357,0 chrXII 288047 . A G 4357.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.81;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4357,480,0 chrXII 288347 . A G 4296.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.00;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4296,454,0 chrXII 288473 . T C 4534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=217;Dels=0.00;FS=2.836;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.574;QD=20.89;ReadPosRankSum=2.359;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:4534,481,0 chrXII 288481 . C T 4492.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=19.88;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4492,460,0 chrXII 288491 . C T 4207.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=18.70;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4207,436,0 chrXII 288536 . A G 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=229;Dels=0.00;FS=3.029;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=0.190;QD=17.42;ReadPosRankSum=2.395;SB=-2.819e+03 GT:AD:DP:GQ:PL 1/1:3,224:229:99:3989,435,0 chrXII 288572 . C T 5108.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=19.5348;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.92;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5108,532,0 chrXII 288614 . A G 5907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.5356;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.674;QD=24.41;ReadPosRankSum=1.689;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:1,239:242:99:5907,637,0 chrXII 289373 . G A 1970 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2226;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=12.63;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2003,213,0 chrXII 289382 . C T 2202 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.0602;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=14.98;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2235,237,0 chrXII 289396 . A G 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=151;Dels=0.00;FS=10.027;HaplotypeScore=15.1571;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;MQRankSum=-1.968;QD=12.96;ReadPosRankSum=2.333;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:2,146:151:99:1990,225,0 chrXII 289433 . G T 3023 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.6053;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=18.21;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3056,324,0 chrXII 289538 . G A 3826.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=26.76;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3826,391,0 chrXII 289582 . T C 4102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=179;Dels=0.00;FS=4.723;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-1.070;QD=22.92;ReadPosRankSum=1.693;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4102,438,0 chrXII 289627 . C T 4958.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=17.2987;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=22.33;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4958,526,0 chrXII 289660 . C G 4302.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=21.30;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,198:202:99:4302,454,0 chrXII 289669 . C T 4600.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.40;SB=-2.928e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4600,475,0 chrXII 289996 . C T 3926.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=25.33;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3926,403,0 chrXII 289997 . A G 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=0.034;QD=23.91;ReadPosRankSum=1.665;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3754,405,0 chrXII 290016 . C T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=22.55;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3495,378,0 chrXII 290058 . A T 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.132;DP=124;Dels=0.00;FS=2.826;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-1.716;QD=21.20;ReadPosRankSum=2.370;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2662,282,0 chrXII 290159 . T C 2417 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.24;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2450,261,0 chrXII 290328 . T C 2656 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.30;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2689,291,0 chrXII 290359 . T C 2854 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.39;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2887,303,0 chrXII 290595 . C T 4541.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.3654;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.15;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4541,478,0 chrXII 290718 . T C 5031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.4778;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.280;QD=23.84;ReadPosRankSum=1.716;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:5031,541,0 chrXII 290736 . A G 4829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=218;Dels=0.00;FS=4.408;HaplotypeScore=10.2986;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=1.049;QD=22.15;ReadPosRankSum=1.605;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4829,514,0 chrXII 290992 . T G 4896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=15.8507;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.709;QD=23.20;ReadPosRankSum=1.683;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:4896,517,0 chrXII 291216 . G A 4535.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.34;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4535,495,0 chrXII 291384 . A G 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=3.216;HaplotypeScore=3.9067;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.608;QD=21.89;ReadPosRankSum=1.709;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3305,342,0 chrXII 291386 . A G 3356.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5116;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.79;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3356,360,0 chrXII 291459 . T C 4490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=206;Dels=0.00;FS=12.260;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.810;QD=21.80;ReadPosRankSum=2.917;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:3,203:206:99:4490,483,0 chrXII 291969 . T C 1627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=85;Dels=0.01;FS=6.638;HaplotypeScore=7.0642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.106;QD=19.14;ReadPosRankSum=1.607;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1660,177,0 chrXII 292312 . C A 2670 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=25.19;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2703,276,0 chrXII 292518 . C G 3464.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.49;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3464,366,0 chrXII 292529 . T C 3314.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.24;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3314,354,0 chrXII 292618 . G C 4224.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.14;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4224,459,0 chrXII 292858 . C T 3719.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8417;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.10;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3719,396,0 chrXII 292952 . A G 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.208;QD=24.03;ReadPosRankSum=1.673;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4205,453,0 chrXII 293009 . A G 4419.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.40;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4419,463,0 chrXII 293060 . G A 3976.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.4816;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.33;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3976,409,0 chrXII 293333 . C T 3164 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3197,333,0 chrXII 293839 . C T 2581 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.64;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2614,267,0 chrXII 293882 . A G 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.621;QD=22.08;ReadPosRankSum=2.356;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2351,252,0 chrXII 294090 . C T 2344 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.04;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2377,243,0 chrXII 294289 . G A 3926.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.8835;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.54;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3926,412,0 chrXII 294637 . G A 4078.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.4744;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4078,418,0 chrXII 294718 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.8151;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.30;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4034,415,0 chrXII 295063 . A G 3879.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.17;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3879,423,0 chrXII 295292 . C T 6754.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=24.0146;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.62;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,284:286:99:6754,697,0 chrXII 295360 . C T 8579.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=9.8678;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.84;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,331:332:99:8579,892,0 chrXII 296236 . C A 2008 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2041,210,0 chrXII 296473 . C T 564 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.45;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,28:29:63:597,63,0 chrXII 297011 . A T 3471.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3471,372,0 chrXII 297157 . G T 2911 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2944,309,0 chrXII 297846 . T A 4025.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.82;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4025,429,0 chrXII 298644 . A G 4682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.342;DP=194;Dels=0.00;FS=16.080;HaplotypeScore=12.9129;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.241;QD=24.13;ReadPosRankSum=3.414;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:4,188:194:99:4682,502,0 chrXII 299124 . G A 6131.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.76;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:6131,634,0 chrXII 299174 . A G 4955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=18.0595;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.337;QD=22.94;ReadPosRankSum=1.716;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4955,529,0 chrXII 299209 . C T 3739.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.08;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3739,388,0 chrXII 299315 . G T 4072.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=19.1131;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.27;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:4072,421,0 chrXII 299526 . A C 3544.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=21.35;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3544,381,0 chrXII 299532 . A G 3662.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.5266;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=21.29;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3662,390,0 chrXII 299734 . G A 3506.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=18.2682;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.92;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3506,358,0 chrXII 300539 . T C 3352.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3352,357,0 chrXII 301123 . G A 5921.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.6046;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=26.08;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:5921,607,0 chrXII 301172 . T C 5509.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.9577;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.16;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5509,577,0 chrXII 301291 . G A 4826.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.3980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4826,505,0 chrXII 301957 . G A 4848.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.42;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4848,490,0 chrXII 301966 . A G 4357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=4.162;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.420;QD=21.05;ReadPosRankSum=1.715;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4357,468,0 chrXII 302144 . T C 6114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.219;DP=266;Dels=0.00;FS=23.625;HaplotypeScore=19.7061;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.231;QD=22.98;ReadPosRankSum=4.450;SB=-3.099e+03 GT:AD:DP:GQ:PL 1/1:7,257:266:99:6114,649,0 chrXII 302196 . C G 5313.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.30;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:0,223:228:99:5313,579,0 chrXII 302282 . T G 4527.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.86;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4527,481,0 chrXII 302332 . T A 5143.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.4009;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5143,532,0 chrXII 302440 . A G 4074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.591;QD=23.55;ReadPosRankSum=1.672;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4074,438,0 chrXII 302671 . G C 3727.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,158:166:99:3727,396,0 chrXII 302764 . A T 5195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=199;Dels=0.00;FS=7.272;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.713;QD=26.11;ReadPosRankSum=2.400;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:5195,529,0 chrXII 303516 . A G 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=3.468;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.416;QD=23.16;ReadPosRankSum=1.697;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2349,249,0 chrXII 303601 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=22.67;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2731,276,0 chrXII 303604 . G A 2612 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.06;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2645,270,0 chrXII 303878 . A G 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=120;Dels=0.00;FS=3.395;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=0.851;QD=24.21;ReadPosRankSum=1.673;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2938,309,0 chrXII 304243 . G A 5246.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.97;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5246,535,0 chrXII 304352 . G A 5025.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.28;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5025,523,0 chrXII 304381 . A G 4862.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.0384;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.80;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4862,520,0 chrXII 304989 . A T 4772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.3945;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.626;QD=24.22;ReadPosRankSum=1.714;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4772,496,0 chrXII 305200 . G A 3882.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=7.8863;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.53;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3882,400,0 chrXII 305324 . G A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.1341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3861,400,0 chrXII 305397 . A C 4816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=186;Dels=0.00;FS=3.783;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.224;QD=25.89;ReadPosRankSum=1.713;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4816,505,0 chrXII 305614 . C T 5630.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=15.2891;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.06;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5630,609,0 chrXII 305731 . A G 3958.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.24;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3958,417,0 chrXII 305736 . C A 4156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=1.152;QD=22.46;ReadPosRankSum=0.459;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4156,427,0 chrXII 305771 . A G 4692.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.4650;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.45;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4692,507,0 chrXII 306415 . A G 4096.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.98;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4096,441,0 chrXII 306665 . C T 1808 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=14.9045;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=18.64;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1841,198,0 chrXII 307503 . G T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3688,382,0 chrXII 307601 . A G 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=3.085;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.174;QD=23.55;ReadPosRankSum=1.703;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2812,300,0 chrXII 308630 . G A 3964.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.02;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3964,406,0 chrXII 308703 . T C 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=165;Dels=0.00;FS=7.378;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.912;QD=22.58;ReadPosRankSum=2.419;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3726,396,0 chrXII 308802 . C T 3734.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.57;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3734,390,0 chrXII 309238 . A C 3424.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.53;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3424,381,0 chrXII 310006 . G T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.2095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3785,400,0 chrXII 310404 . A G 2588 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.70;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2621,285,0 chrXII 310613 . C T 2912 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.89;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2945,303,0 chrXII 310770 . C T 3841.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.2413;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3841,405,0 chrXII 310983 . T C 4614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=202;Dels=0.00;FS=6.720;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.470;QD=22.84;ReadPosRankSum=2.425;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4614,487,0 chrXII 311265 . A C 2977 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.3774;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.57;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3010,324,0 chrXII 311784 . T C 3863.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.41;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3863,411,0 chrXII 311889 . G A 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.0571;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.445;QD=24.25;ReadPosRankSum=0.408;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3855,394,0 chrXII 311937 . G A 3203 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.4173;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=23.55;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3236,351,0 chrXII 312135 . G A 3813.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.68;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3813,400,0 chrXII 312163 . T C 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=179;Dels=0.00;FS=2.974;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.909;QD=21.07;ReadPosRankSum=2.380;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:2,175:179:99:3771,402,0 chrXII 312168 . G C 3977.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.0711;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.38;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:3977,415,0 chrXII 312399 . G A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.55;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3698,385,0 chrXII 312573 . T C 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=150;Dels=0.00;FS=6.471;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.305;QD=23.07;ReadPosRankSum=2.400;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3461,372,0 chrXII 312732 . G A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3629,376,0 chrXII 312984 . T A 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=133;Dels=0.00;FS=2.954;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.194;QD=23.97;ReadPosRankSum=2.394;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3221,334,0 chrXII 313107 . T G 4507.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.2878;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.35;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4507,486,0 chrXII 313320 . T C 4645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=185;Dels=0.00;FS=3.303;HaplotypeScore=12.5843;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.358;QD=25.11;ReadPosRankSum=1.713;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4645,501,0 chrXII 313374 . T C 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=163;Dels=0.00;FS=4.692;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=0.834;QD=21.98;ReadPosRankSum=1.711;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3583,387,0 chrXII 313809 . A G 4257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=203;Dels=0.00;FS=6.763;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.310;QD=20.97;ReadPosRankSum=2.413;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:4257,451,0 chrXII 313812 . G A 4313.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.35;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4313,456,0 chrXII 313848 . G A 4437.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.64;SB=-2.743e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4437,463,0 chrXII 313878 . A G 4505.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.66;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4505,481,0 chrXII 314814 . T C 2726 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.65;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2759,303,0 chrXII 315348 . G C 2984 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.10;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,131:135:99:3017,324,0 chrXII 315383 . T C 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=155;Dels=0.00;FS=2.979;HaplotypeScore=10.4361;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.072;QD=23.68;ReadPosRankSum=2.402;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3670,393,0 chrXII 315459 . T C 3984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=173;Dels=0.00;FS=9.186;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.241;QD=23.03;ReadPosRankSum=2.935;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:3,168:173:99:3984,423,0 chrXII 315521 . C T 4876.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.53;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4876,520,0 chrXII 315642 . T C 3007 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3040,339,0 chrXII 316223 . A C 4306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.806;DP=192;Dels=0.00;FS=6.053;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.890;QD=22.43;ReadPosRankSum=2.911;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:4306,465,0 chrXII 316490 . G A 6310.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:6310,652,0 chrXII 316628 . T C 6515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=278;Dels=0.00;FS=2.936;HaplotypeScore=20.7787;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.075;QD=23.44;ReadPosRankSum=2.388;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:2,276:278:99:6515,697,0 chrXII 317117 . C T 3086 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.30;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3119,315,0 chrXII 317498 . G A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.99;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3257,345,0 chrXII 317534 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.79;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:3050,318,0 chrXII 317605 . A G 2107 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.72;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2140,231,0 chrXII 317614 . A T 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.973;QD=21.03;ReadPosRankSum=1.699;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2241,231,0 chrXII 317989 . G A 3985.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.8700;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.90;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3985,412,0 chrXII 318033 . G A 3713.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.1687;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.06;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3713,382,0 chrXII 318348 . A G 3110 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=27.04;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:3143,330,0 chrXII 318570 . T C 6825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=15.4727;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.335;QD=24.46;ReadPosRankSum=2.432;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:2,273:279:99:6825,712,0 chrXII 318879 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.73;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3409,366,0 chrXII 318969 . C T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.38;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3320,342,0 chrXII 319560 . G A 4566.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.06;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4566,486,0 chrXII 319635 . A G 4504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.637;DP=205;Dels=0.00;FS=12.171;HaplotypeScore=14.6718;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.164;QD=21.97;ReadPosRankSum=3.744;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:5,200:205:99:4504,483,0 chrXII 319896 . A G 3637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6778;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=-0.689;QD=21.78;ReadPosRankSum=1.669;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3637,384,0 chrXII 320465 . C T 4348.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.3378;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4348,457,0 chrXII 320775 . T C 5471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=252;Dels=0.00;FS=7.360;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=2.430;QD=21.71;ReadPosRankSum=2.341;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:2,247:252:99:5471,594,0 chrXII 320814 . G A 4958.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.7102;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.54;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4958,520,0 chrXII 320904 . G A 4648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.340;DP=204;Dels=0.00;FS=4.154;HaplotypeScore=13.6220;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.009;QD=22.78;ReadPosRankSum=-1.391;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4648,464,0 chrXII 321077 . C T 4632.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.6584;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.27;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4632,481,0 chrXII 321084 . C T 4591.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=22.73;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4591,472,0 chrXII 321294 . C T 6078.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.56;SB=-3.220e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:6078,637,0 chrXII 321345 . G A 5191.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.7880;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=24.49;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:5191,535,0 chrXII 321460 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=181;Dels=0.00;FS=2.724;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.187;QD=21.98;ReadPosRankSum=2.382;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3978,429,0 chrXII 321772 . T C 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=168;Dels=0.00;FS=2.880;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.996;QD=23.62;ReadPosRankSum=2.362;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3968,423,0 chrXII 321825 . A G 4734.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.32;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4734,493,0 chrXII 322042 . C T 2030 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=16.64;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2063,219,0 chrXII 322071 . T C 1782 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=16.20;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1815,192,0 chrXII 322311 . T G 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.182;QD=24.72;ReadPosRankSum=1.650;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3148,351,0 chrXII 322903 . G A 3726.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.00;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3726,405,0 chrXII 323271 . C T 4630.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.2564;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.50;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4630,475,0 chrXII 323467 . G A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.06;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3417,349,0 chrXII 323570 . T A 3483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=2.807;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.392;QD=24.70;ReadPosRankSum=2.328;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3483,372,0 chrXII 323599 . A G 3818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=1.098;QD=23.00;ReadPosRankSum=1.563;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3818,408,0 chrXII 323636 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.98;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3626,387,0 chrXII 323645 . T C 3299.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.36;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3299,363,0 chrXII 323709 . G A 5420.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.09;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5420,574,0 chrXII 324014 . A G 7424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=329;Dels=0.00;FS=3.340;HaplotypeScore=21.1022;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.708;QD=22.57;ReadPosRankSum=1.721;SB=-4.073e+03 GT:AD:DP:GQ:PL 1/1:1,328:329:99:7424,805,0 chrXII 324173 . A C 7409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.247;QD=22.94;ReadPosRankSum=0.312;SB=-3.883e+03 GT:AD:DP:GQ:PL 1/1:1,321:323:99:7409,796,0 chrXII 324449 . C T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.80;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3306,354,0 chrXII 324470 . G A 3463.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.09;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3463,352,0 chrXII 324662 . A G 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=154;Dels=0.00;FS=8.681;HaplotypeScore=9.6925;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.152;QD=24.03;ReadPosRankSum=2.354;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3700,390,0 chrXII 325271 . G T 5604.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.13;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5604,589,0 chrXII 325334 . C A 3848.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.5495;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3848,403,0 chrXII 325403 . C A 5223.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5223,541,0 chrXII 326213 . A G 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.324;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.643;QD=21.95;ReadPosRankSum=3.397;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:4,139:143:99:3172,339,0 chrXII 326408 . T C 1235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.114;QD=22.05;ReadPosRankSum=1.609;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1268,135,0 chrXII 326443 . C G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=67.7466;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-0.144;QD=0.26;ReadPosRankSum=1.636;SB=-4.818e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:6:50,6,0 chrXII 326975 . C T 5646.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=5.6126;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.05;SB=-3.195e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5646,598,0 chrXII 326981 . T C 5743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=258;Dels=0.00;FS=3.271;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.923;QD=22.26;ReadPosRankSum=1.665;SB=-3.238e+03 GT:AD:DP:GQ:PL 1/1:1,256:258:99:5743,619,0 chrXII 327112 . A G 6370.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.33;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:6370,676,0 chrXII 327373 . T C 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=123;Dels=0.00;FS=6.569;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.294;QD=22.07;ReadPosRankSum=1.703;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:2,117:123:99:2748,297,0 chrXII 327506 . C A 840 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=18.67;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:90:873,90,0 chrXII 327514 . A T 821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.443;QD=19.55;ReadPosRankSum=2.333;SB=-6.401e+01 GT:AD:DP:GQ:PL 1/1:2,40:42:87:854,87,0 chrXII 328168 . G A 4397.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.2579;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.24;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4397,463,0 chrXII 328471 . C T 6004.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-3.017e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6004,637,0 chrXII 328528 . A G 5383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.775;DP=247;Dels=0.00;FS=2.529;HaplotypeScore=11.4503;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.693;QD=21.79;ReadPosRankSum=2.947;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:3,244:247:99:5383,571,0 chrXII 328635 . C T 7226.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=18.2108;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.61;SB=-3.731e+03 GT:AD:DP:GQ:PL 1/1:0,305:306:99:7226,769,0 chrXII 328804 . G A 5835.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.88;SB=-2.993e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5835,619,0 chrXII 328989 . T C 5358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-1.159;QD=20.93;ReadPosRankSum=1.691;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:1,253:256:99:5358,585,0 chrXII 328990 . A G 5272.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.51;SB=-2.950e+03 GT:AD:DP:GQ:PL 1/1:0,254:257:99:5272,576,0 chrXII 330265 . C G 5773.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.91;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:0,249:252:99:5773,613,0 chrXII 330526 . A G 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=157;Dels=0.00;FS=3.358;HaplotypeScore=13.4442;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.021;QD=21.81;ReadPosRankSum=1.710;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3424,384,0 chrXII 330832 . C T 3046 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.01;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3079,330,0 chrXII 331041 . T G 3050 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=19.30;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3083,333,0 chrXII 331044 . C T 3314.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=20.97;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3314,339,0 chrXII 331075 . G C 2494 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;QD=16.85;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2527,273,0 chrXII 331078 . A G 2535 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;QD=16.90;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2568,279,0 chrXII 331090 . T C 2747 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2121;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=17.17;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2780,303,0 chrXII 331273 . T C 4135.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=23.49;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4135,447,0 chrXII 331395 . C A 3787.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.1786;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.95;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3787,388,0 chrXII 331937 . T G 4660.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.15;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4660,490,0 chrXII 331984 . C T 4583.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.25;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4583,472,0 chrXII 332094 . C T 5490.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=4.3755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5490,565,0 chrXII 332157 . A T 4320.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.10;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4320,448,0 chrXII 332457 . T C 4911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=217;Dels=0.00;FS=10.213;HaplotypeScore=12.7713;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.210;QD=22.63;ReadPosRankSum=2.359;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:4911,534,0 chrXII 332566 . G A 5406.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=17.4303;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.16;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5406,571,0 chrXII 334797 . A C 4532.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.98;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4532,484,0 chrXII 335529 . G T 4177.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.34;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4177,444,0 chrXII 335835 . A G 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.113;QD=23.12;ReadPosRankSum=1.700;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2530,264,0 chrXII 336921 . A T 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.211;QD=22.11;ReadPosRankSum=1.704;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2753,306,0 chrXII 336975 . G A 3439.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=25.29;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3439,352,0 chrXII 337003 . A G 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.994;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.077;QD=24.43;ReadPosRankSum=1.709;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3616,375,0 chrXII 338262 . G A 4298.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.42;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4298,445,0 chrXII 338295 . C T 4551.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.34;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4551,469,0 chrXII 338892 . A G 3451.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3451,363,0 chrXII 339111 . G A 4238.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.29;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4238,453,0 chrXII 339377 . T C 5372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=245;Dels=0.00;FS=5.718;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.127;QD=21.93;ReadPosRankSum=2.955;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:3,242:245:99:5372,574,0 chrXII 339393 . T C 5792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=1.382;QD=22.54;ReadPosRankSum=1.705;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:5792,622,0 chrXII 339496 . G A 3541.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.99;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3541,367,0 chrXII 339567 . G A 4187.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.81;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4187,430,0 chrXII 339777 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=24.75;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3911,429,0 chrXII 339830 . C T 3140 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.97;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3173,330,0 chrXII 341688 . T A 5254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=250;Dels=0.00;FS=3.080;HaplotypeScore=18.1517;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.596;QD=21.02;ReadPosRankSum=1.690;SB=-3.109e+03 GT:AD:DP:GQ:PL 1/1:1,249:250:99:5254,565,0 chrXII 342533 . G A 4186.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.00;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4186,436,0 chrXII 344703 . A G 4464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=3.687;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.518;QD=22.89;ReadPosRankSum=1.714;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4464,483,0 chrXII 345286 . T C 6131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=16.9965;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.719;QD=23.49;ReadPosRankSum=1.665;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:1,259:261:99:6131,652,0 chrXII 346106 . A T 4177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.700;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.5801;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.590;QD=22.70;ReadPosRankSum=2.011;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:4177,429,0 chrXII 348674 . G C 1658 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.38;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1691,180,0 chrXII 353647 . C T 3548.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3548,375,0 chrXII 353771 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6061;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.46;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2708,282,0 chrXII 357438 . G T 3192 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.33;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3225,331,0 chrXII 357723 . C T 3539.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.7771;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.26;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3539,375,0 chrXII 361284 . T C 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=134;Dels=0.00;FS=6.114;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=2.053;QD=21.57;ReadPosRankSum=2.872;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:3,130:134:99:2923,306,0 chrXII 361865 . A G 3892.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3892,429,0 chrXII 364406 . T C 2935 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2968,321,0 chrXII 364788 . T C 5532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=234;Dels=0.00;FS=9.203;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.533;QD=23.64;ReadPosRankSum=2.935;SB=-3.134e+03 GT:AD:DP:GQ:PL 1/1:3,227:234:99:5532,580,0 chrXII 365170 . G A 2552 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.58;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2585,267,0 chrXII 366176 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3819,411,0 chrXII 367056 . C T 2907 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2940,306,0 chrXII 367673 . A G 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=4.142;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.016;QD=24.81;ReadPosRankSum=1.637;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2737,291,0 chrXII 369482 . A G 925 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.68;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:958,99,0 chrXII 369485 . A G 940 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.36;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:973,102,0 chrXII 369632 . A G 224.01 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.67;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:27:257,27,0 chrXII 369646 . C T 287 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=22.08;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:33:320,33,0 chrXII 369873 . T C 5568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.322;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=17.0471;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.775;QD=25.78;ReadPosRankSum=3.371;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:4,211:216:99:5568,601,0 chrXII 370090 . A G 5735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=20.5247;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.807;QD=22.49;ReadPosRankSum=2.430;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:2,252:255:99:5735,604,0 chrXII 370156 . G A 5029.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.53;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5029,514,0 chrXII 370176 . A T 4464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.385;DP=206;Dels=0.00;FS=11.884;HaplotypeScore=16.0959;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.462;QD=21.67;ReadPosRankSum=3.721;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:5,200:206:99:4464,477,0 chrXII 370434 . A T 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.270;QD=22.34;ReadPosRankSum=2.407;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2580,261,0 chrXII 370558 . G A 3812.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=24.75;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3812,397,0 chrXII 370785 . T C 5874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=17.5457;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.832;QD=23.04;ReadPosRankSum=1.718;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:1,253:255:99:5874,639,0 chrXII 371097 . T C 6939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=296;Dels=0.00;FS=6.616;HaplotypeScore=15.3666;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.769;QD=23.44;ReadPosRankSum=2.433;SB=-3.702e+03 GT:AD:DP:GQ:PL 1/1:2,293:296:99:6939,733,0 chrXII 375282 . C T 10708.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.430;DP=435;Dels=0.00;FS=5.948;HaplotypeScore=31.9913;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=2.438;QD=24.62;ReadPosRankSum=0.767;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:3,431:435:99:10708,1126,0 chrXII 378260 . T C 6317.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.75;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6317,688,0 chrXII 381256 . T C 4323.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.9422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4323,465,0 chrXII 381963 . C T 5201.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5201,535,0 chrXII 382385 . C T 1909 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.73;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1942,201,0 chrXII 382405 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.40;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2373,249,0 chrXII 382454 . G A 2575 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.29;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2608,270,0 chrXII 382506 . G A 2986 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.74;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:3019,309,0 chrXII 382560 . T C 2836 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.25;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2869,309,0 chrXII 382590 . T C 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=116;Dels=0.00;FS=7.903;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.474;QD=21.04;ReadPosRankSum=2.344;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2474,264,0 chrXII 382777 . C T 2787 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.82;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2820,288,0 chrXII 384824 . T C 3293.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.21;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3293,345,0 chrXII 386390 . G A 864 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:93:897,93,0 chrXII 386841 . G A 6453.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=22.1783;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.26;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,263:266:99:6453,673,0 chrXII 387257 . A G 4784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.210;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=17.2507;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;MQRankSum=0.234;QD=22.25;ReadPosRankSum=2.427;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:4784,508,0 chrXII 388450 . A T 4937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=224;Dels=0.00;FS=5.721;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.912;QD=22.04;ReadPosRankSum=1.717;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:4937,514,0 chrXII 388456 . C T 4727.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.29;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4727,499,0 chrXII 388762 . A G 5274.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=28.6426;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=24.30;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:5274,565,0 chrXII 388801 . A G 4766.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.95;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4766,525,0 chrXII 388886 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=188;Dels=0.00;FS=2.950;HaplotypeScore=5.8867;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;MQRankSum=0.333;QD=18.71;ReadPosRankSum=2.423;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:3517,375,0 chrXII 388891 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.9677;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;QD=17.94;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3498,364,0 chrXII 388903 . G A 3357.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.25;MQ0=0;QD=17.04;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3357,360,0 chrXII 388904 . G C 3331.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.25;MQ0=0;QD=16.91;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3331,357,0 chrXII 388930 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=0;QD=15.30;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:3365,354,0 chrXII 388945 . G T 4115.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=8.2343;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=18.29;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4115,418,0 chrXII 389118 . C G 7855.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=20.1889;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=24.17;SB=-3.298e+03 GT:AD:DP:GQ:PL 1/1:0,322:325:99:7855,847,0 chrXII 390234 . C A 1238 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.51;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1271,132,0 chrXII 392412 . T A 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=166;Dels=0.00;FS=2.876;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.961;QD=25.43;ReadPosRankSum=2.361;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:4221,436,0 chrXII 397180 . A G 4845.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,190:194:99:4845,531,0 chrXII 397322 . G A 5228.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5228,544,0 chrXII 398229 . C G 4055.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.3467;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.40;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4055,429,0 chrXII 398325 . A G 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.9541;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.436;QD=22.37;ReadPosRankSum=2.408;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3960,415,0 chrXII 400451 . G A 2583 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.06;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2616,270,0 chrXII 405362 . T C 5595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.517;DP=238;Dels=0.00;FS=7.972;HaplotypeScore=19.1105;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.032;QD=23.51;ReadPosRankSum=3.814;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:5,232:238:99:5595,598,0 chrXII 408118 . C T 5527.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.42;SB=-3.235e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5527,568,0 chrXII 408647 . G A 7840.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-2.842e+03 GT:AD:DP:GQ:PL 1/1:0,320:321:99:7840,808,0 chrXII 411601 . T C 5547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=248;Dels=0.00;FS=7.742;HaplotypeScore=16.5886;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.332;QD=22.37;ReadPosRankSum=2.430;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:2,246:248:99:5547,612,0 chrXII 411916 . T G 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.603;QD=22.40;ReadPosRankSum=1.695;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4234,462,0 chrXII 413734 . A G 4214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.776;QD=24.22;ReadPosRankSum=1.712;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4214,447,0 chrXII 415537 . A G 3384.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.6509;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.18;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3384,357,0 chrXII 417289 . G A 8617.01 PASS AC=2;AF=1.00;AN=2;DP=355;Dels=0.00;FS=0.000;HaplotypeScore=20.0611;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.27;SB=-3.552e+03 GT:AD:DP:GQ:PL 1/1:0,354:355:99:8617,898,0 chrXII 418313 . A G 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=121;Dels=0.00;FS=3.083;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.068;QD=22.59;ReadPosRankSum=1.674;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2766,294,0 chrXII 418844 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.69;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2940,315,0 chrXII 418928 . C T 4840.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.95;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4840,493,0 chrXII 419081 . T C 6569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=10.5277;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.145;QD=25.07;ReadPosRankSum=2.403;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:2,260:262:99:6569,706,0 chrXII 419261 . T C 5294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.431;DP=271;Dels=0.00;FS=9.478;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=0.968;QD=19.54;ReadPosRankSum=2.377;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:2,268:271:99:5294,576,0 chrXII 419264 . G A 5311.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.10;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:5311,565,0 chrXII 419552 . T A 5231.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=15.7132;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.44;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5231,544,0 chrXII 423821 . G A 6555.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=11.6442;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.84;SB=-3.568e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:6555,670,0 chrXII 423854 . G C 7732.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=21.4088;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.57;SB=-4.044e+03 GT:AD:DP:GQ:PL 1/1:0,328:328:99:7732,814,0 chrXII 424412 . G A 10060.01 filter AC=2;AF=1.00;AN=2;DP=441;Dels=0.00;FS=0.000;HaplotypeScore=28.5994;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.81;SB=-5.243e+03 GT:AD:DP:GQ:PL 1/1:0,441:441:99:10060,1057,0 chrXII 424491 . T C 12984.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=545;Dels=0.00;FS=4.072;HaplotypeScore=20.7041;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.675;QD=23.82;ReadPosRankSum=1.713;SB=-5.869e+03 GT:AD:DP:GQ:PL 1/1:1,543:545:99:12984,1376,0 chrXII 425824 . C T 4262.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4262,448,0 chrXII 428126 . A G 4197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.611;QD=24.40;ReadPosRankSum=1.692;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4197,450,0 chrXII 430049 . G A 4199.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.27;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:4199,447,0 chrXII 431739 . T C 5250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-0.844;QD=22.44;ReadPosRankSum=1.658;SB=-3.172e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:5250,562,0 chrXII 431754 . G A 4858.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.0332;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.40;SB=-3.019e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4858,505,0 chrXII 432592 . C T 3034 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.4233;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3067,327,0 chrXII 433340 . C T 7049.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=13.1491;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.06;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:7049,733,0 chrXII 434449 . T C 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=3.733;HaplotypeScore=10.5702;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.645;QD=21.33;ReadPosRankSum=1.656;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2977,318,0 chrXII 441545 . A T 1354 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.16;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1387,153,0 chrXII 443985 . A T 5431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=217;Dels=0.00;FS=10.980;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.486;QD=25.03;ReadPosRankSum=2.912;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:3,214:217:99:5431,568,0 chrXII 444126 . A T 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.565;QD=23.39;ReadPosRankSum=1.684;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3415,346,0 chrXII 444168 . T C 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=5.202;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.359;QD=22.11;ReadPosRankSum=1.710;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3516,372,0 chrXII 444569 . C T 3345.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.45;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3345,346,0 chrXII 444593 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.77;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3304,345,0 chrXII 444668 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.76;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3244,333,0 chrXII 444770 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.60;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3430,355,0 chrXII 444806 . T C 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=145;Dels=0.00;FS=3.040;HaplotypeScore=10.9710;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=1.093;QD=24.41;ReadPosRankSum=2.348;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3540,361,0 chrXII 444929 . T C 4019.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.9478;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.10;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4019,432,0 chrXII 445043 . G A 3943.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.9518;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.55;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3943,409,0 chrXII 445082 . A C 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.7331;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-0.695;QD=18.03;ReadPosRankSum=1.713;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3242,342,0 chrXII 445085 . C T 3226.07 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.2041;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.12;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3259,337,0 chrXII 445132 . G A 3033 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=17.4567;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.05;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3066,313,0 chrXII 445179 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.40;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3050,327,0 chrXII 445227 . T C 3213.98 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.01;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3247,360,0 chrXII 445298 . G T 1833 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=22.35;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1866,198,0 chrXII 445516 . C T 1974 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.43;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2007,213,0 chrXII 445923 . A G 5292.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.6357;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.69;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5292,573,0 chrXII 446850 . T C 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.010;QD=22.07;ReadPosRankSum=1.673;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3907,423,0 chrXII 447548 . A G 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.124;QD=20.22;ReadPosRankSum=1.671;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2338,246,0 chrXII 450044 . C T 5251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=3.882;HaplotypeScore=12.1841;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.330;QD=26.39;ReadPosRankSum=-0.997;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:5251,550,0 chrXII 450246 . C G 4700.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=18.9283;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.27;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4700,502,0 chrXII 460417 . T A 593 filter AC=2;AF=1.00;AN=2;BaseQRankSum=9.205;DP=1000;DS;Dels=0.00;FS=267.191;HaplotypeScore=904.3311;MLEAC=2;MLEAF=1.00;MQ=36.96;MQ0=0;MQRankSum=-6.185;QD=0.59;ReadPosRankSum=11.272;SB=-3.281e+03 GT:AD:DP:GQ:PL 1/1:51,949:1000:84:626,84,0 chrXII 460505 . G A 22700.01 filter AC=2;AF=1.00;AN=2;DP=999;DS;Dels=0.00;FS=0.000;HaplotypeScore=91.6767;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=22.72;SB=-6.094e+03 GT:AD:DP:GQ:PL 1/1:0,975:999:99:22700,2370,0 chrXII 460659 . C T 11364.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=22.4819;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=111;QD=11.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,996:998:99:11364,1337,0 chrXII 490443 . A G 529 filter AC=2;AF=1.00;AN=2;BaseQRankSum=8.895;DP=139;DS;Dels=0.00;FS=332.865;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.71;MQ0=0;MQRankSum=8.900;QD=3.81;ReadPosRankSum=8.895;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:102,36:139:57:562,57,0 chrXII 490487 . T C 1192 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.98;MQ0=0;QD=16.33;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1225,129,0 chrXII 490736 . T G 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=155;Dels=0.00;FS=2.887;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;MQRankSum=1.039;QD=20.52;ReadPosRankSum=2.339;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3214,354,0 chrXII 490749 . T C 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=2.967;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=0.811;QD=20.64;ReadPosRankSum=2.416;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3087,339,0 chrXII 490778 . A G 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=132;Dels=0.00;FS=3.018;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;MQRankSum=-0.903;QD=16.87;ReadPosRankSum=2.282;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2260,246,0 chrXII 490779 . A G 2126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=126;Dels=0.00;FS=3.005;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;MQRankSum=-1.493;QD=16.87;ReadPosRankSum=2.411;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2159,234,0 chrXII 490822 . G C 2570 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=18.49;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2603,279,0 chrXII 490980 . A T 3680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.689;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=-0.011;QD=23.14;ReadPosRankSum=1.667;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3680,390,0 chrXII 490994 . G A 3493.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=22.25;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3493,378,0 chrXII 491056 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=109.0376;MLEAC=2;MLEAF=1.00;MQ=36.96;MQ0=0;QD=19.49;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2450,252,0 chrXII 491075 . A G 2245 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;QD=18.25;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2278,243,0 chrXII 491084 . T C 2049 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=16.80;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2082,228,0 chrXII 491106 . G A 2360 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=17.35;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2393,249,0 chrXII 491119 . C G 2487 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=17.27;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2520,270,0 chrXII 491215 . G T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.1904;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=25.78;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3635,376,0 chrXII 491269 . A G 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=134;Dels=0.00;FS=9.338;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;MQRankSum=-1.380;QD=20.87;ReadPosRankSum=2.946;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:3,127:134:99:2829,300,0 chrXII 491270 . A G 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=3.319;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;MQRankSum=-1.124;QD=21.01;ReadPosRankSum=1.706;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2806,297,0 chrXII 491307 . C T 2462 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=21.04;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2495,261,0 chrXII 491511 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=82.4559;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=18.24;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1930,207,0 chrXII 491674 . T C 1792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=104;Dels=0.00;FS=3.019;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;MQRankSum=-0.777;QD=17.23;ReadPosRankSum=2.354;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:2,101:104:99:1825,207,0 chrXII 491685 . T G 1635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;MQRankSum=-1.697;QD=16.35;ReadPosRankSum=1.663;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1668,180,0 chrXII 491704 . T C 1333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=105;Dels=0.00;FS=2.910;HaplotypeScore=5.0147;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;MQRankSum=-1.254;QD=12.70;ReadPosRankSum=2.403;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:1366,147,0 chrXII 491710 . G T 1255 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.9594;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=12.07;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1288,138,0 chrXII 491810 . A G 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.238;DP=120;Dels=0.00;FS=9.068;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.738;QD=22.32;ReadPosRankSum=3.384;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:4,116:120:99:2711,288,0 chrXII 491842 . G A 2003 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=19.08;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2036,219,0 chrXII 491851 . A T 1867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=107;Dels=0.00;FS=3.959;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;MQRankSum=0.113;QD=17.45;ReadPosRankSum=1.667;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1900,204,0 chrXII 491881 . T C 2117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=131;Dels=0.00;FS=2.833;HaplotypeScore=4.0466;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;MQRankSum=-1.736;QD=16.16;ReadPosRankSum=2.168;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2150,228,0 chrXII 491896 . T A 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.4989;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-0.439;QD=18.34;ReadPosRankSum=1.706;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2490,261,0 chrXII 492575 . T C 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=141;Dels=0.00;FS=5.959;HaplotypeScore=16.4103;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.757;QD=20.92;ReadPosRankSum=2.919;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:3,134:141:99:2983,321,0 chrXII 493579 . A G 4711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=200;Dels=0.00;FS=3.351;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-0.896;QD=23.56;ReadPosRankSum=1.715;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4711,510,0 chrXII 493681 . G A 4403.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.55;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4403,457,0 chrXII 493693 . A G 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=181;Dels=0.00;FS=6.090;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=0.350;QD=21.07;ReadPosRankSum=2.884;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:3813,411,0 chrXII 493774 . T C 3634.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.9833;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=21.01;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3634,390,0 chrXII 493842 . C A 3923.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.2384;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.21;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3923,406,0 chrXII 493918 . A G 4230.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=19.7011;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.37;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4230,444,0 chrXII 494317 . T C 2269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=111;Dels=0.00;FS=5.903;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.383;QD=20.44;ReadPosRankSum=1.637;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2302,243,0 chrXII 494491 . A G 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=6.217;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.046;QD=24.54;ReadPosRankSum=1.671;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2806,303,0 chrXII 494709 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=19.65;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2646,282,0 chrXII 494711 . C T 2711 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=19.64;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2744,285,0 chrXII 495002 . C G 3411.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.1092;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.69;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3411,372,0 chrXII 495344 . A C 4301.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=60.68;MQ0=0;QD=23.89;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4301,457,0 chrXII 495807 . A G 1768 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.09;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1801,189,0 chrXII 496218 . T C 1994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.064;QD=24.62;ReadPosRankSum=1.689;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:2027,213,0 chrXII 496434 . C T 3392.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.13;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3392,343,0 chrXII 496835 . A G 3204 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3237,345,0 chrXII 497835 . T C 4340.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.94;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4340,462,0 chrXII 497943 . G A 3217.04 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.3082;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.83;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,131:135:99:3250,348,0 chrXII 497970 . T C 3154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=137;Dels=0.00;FS=3.008;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.407;QD=23.02;ReadPosRankSum=2.341;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3187,345,0 chrXII 498294 . T A 2405 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2438,252,0 chrXII 498457 . T C 2735 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.60;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2768,300,0 chrXII 498746 . C T 1992 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=17.95;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2025,213,0 chrXII 498921 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.74;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3389,360,0 chrXII 499674 . A G 3648.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3648,399,0 chrXII 500139 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.68;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2825,291,0 chrXII 500275 . G T 2497 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=13.4832;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.30;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2530,261,0 chrXII 500366 . C T 2433 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.4060;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.32;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2466,258,0 chrXII 500416 . C G 2986 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.43;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,154:162:99:3019,324,0 chrXII 500417 . C G 3031 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=18.26;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,161:166:99:3064,324,0 chrXII 500491 . C G 4212.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.17;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4212,445,0 chrXII 500587 . A G 6309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.513;DP=254;Dels=0.00;FS=3.452;HaplotypeScore=15.8056;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=2.274;QD=24.84;ReadPosRankSum=2.274;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:2,249:254:99:6309,644,0 chrXII 500810 . T C 7178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=309;Dels=0.00;FS=4.604;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.585;QD=23.23;ReadPosRankSum=1.698;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:1,305:309:99:7178,760,0 chrXII 500833 . T C 6399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=305;Dels=0.00;FS=5.069;HaplotypeScore=10.0935;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.218;QD=20.98;ReadPosRankSum=1.675;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:1,301:305:99:6399,673,0 chrXII 501110 . A G 4109.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.1360;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.61;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4109,441,0 chrXII 501203 . G T 2951 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.67;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2984,312,0 chrXII 501434 . T G 2601 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.1093;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.85;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,132:138:99:2634,297,0 chrXII 502072 . G A 4040.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.09;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4040,418,0 chrXII 502281 . G A 4280.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=23.7975;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=24.04;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4280,448,0 chrXII 502331 . G A 3929.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=23.11;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3929,420,0 chrXII 502343 . G A 3775.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=24.20;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3775,385,0 chrXII 502353 . A G 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=144;Dels=0.00;FS=9.423;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-2.108;QD=21.75;ReadPosRankSum=2.313;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3165,336,0 chrXII 502411 . A G 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=3.493;HaplotypeScore=5.8242;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.851;QD=20.39;ReadPosRankSum=1.702;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2378,252,0 chrXII 502531 . C T 4019.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.78;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4019,418,0 chrXII 502604 . G A 2945 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.90;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:2978,318,0 chrXII 502625 . G A 3734.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.05;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3734,388,0 chrXII 502894 . A T 3779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.6413;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.574;QD=21.59;ReadPosRankSum=1.712;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3779,394,0 chrXII 502957 . C T 3447.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.45;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3447,372,0 chrXII 503086 . A G 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-1.001;QD=22.60;ReadPosRankSum=1.694;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2067,219,0 chrXII 503193 . A G 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=106;Dels=0.00;FS=16.305;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-0.728;QD=18.63;ReadPosRankSum=3.306;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:4,101:106:99:2008,213,0 chrXII 503204 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.13;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2247,231,0 chrXII 503277 . G C 5086.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=23.77;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5086,541,0 chrXII 503302 . G A 4626.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.03;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4626,501,0 chrXII 503313 . G A 4243.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.4580;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.70;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:4243,436,0 chrXII 503512 . G C 7590.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.13;SB=-3.978e+03 GT:AD:DP:GQ:PL 1/1:0,341:343:99:7590,814,0 chrXII 503635 . C T 7350.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:0,300:300:99:7350,748,0 chrXII 503710 . A G 6534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=280;Dels=0.00;FS=2.972;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.544;QD=23.34;ReadPosRankSum=2.397;SB=-3.240e+03 GT:AD:DP:GQ:PL 1/1:2,277:280:99:6534,712,0 chrXII 503785 . T C 6938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.284;DP=309;Dels=0.00;FS=8.183;HaplotypeScore=26.3921;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.249;QD=22.45;ReadPosRankSum=3.387;SB=-3.110e+03 GT:AD:DP:GQ:PL 1/1:4,300:309:99:6938,754,0 chrXII 504004 . T C 6724.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=11.8579;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.12;SB=-3.151e+03 GT:AD:DP:GQ:PL 1/1:0,304:304:99:6724,721,0 chrXII 504088 . C G 5622.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=29.5591;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.37;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,268:276:99:5622,615,0 chrXII 504211 . C T 4186.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.0369;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.13;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4186,439,0 chrXII 504236 . T C 3221.92 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=20.92;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3255,348,0 chrXII 504352 . T A 4511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=182;Dels=0.01;FS=6.061;HaplotypeScore=16.1903;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;MQRankSum=-0.550;QD=24.79;ReadPosRankSum=2.895;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:4511,466,0 chrXII 504507 . A G 4504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=195;Dels=0.00;FS=6.795;HaplotypeScore=7.4281;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.779;QD=23.10;ReadPosRankSum=2.399;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4504,486,0 chrXII 504583 . A T 4355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.133;DP=202;Dels=0.00;FS=6.395;HaplotypeScore=15.1309;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-2.146;QD=21.56;ReadPosRankSum=2.328;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4355,477,0 chrXII 504665 . A G 4977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=206;Dels=0.00;FS=3.602;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.883;QD=24.16;ReadPosRankSum=1.630;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4977,537,0 chrXII 504701 . T C 4218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=180;Dels=0.00;FS=6.094;HaplotypeScore=8.5716;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=-2.275;QD=23.43;ReadPosRankSum=2.916;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:3,176:180:99:4218,456,0 chrXII 505064 . C T 3746.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.81;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3746,405,0 chrXII 505089 . C T 3823.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.6933;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.35;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3823,394,0 chrXII 505154 . G A 5907.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.57;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5907,607,0 chrXII 505346 . T C 5168.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.58;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5168,556,0 chrXII 505622 . T C 3888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=168;Dels=0.00;FS=8.185;HaplotypeScore=9.1986;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.932;QD=23.14;ReadPosRankSum=2.390;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3888,417,0 chrXII 505760 . C T 2285 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.22;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2318,252,0 chrXII 505937 . T A 1420 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=25.36;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1453,150,0 chrXII 505960 . T A 1342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.3501;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=1.108;QD=21.65;ReadPosRankSum=1.562;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1375,147,0 chrXII 506053 . C G 896 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.40;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:99:929,99,0 chrXII 506556 . C T 5603.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.47;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:5603,571,0 chrXII 507075 . C T 7711.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.96;SB=-4.183e+03 GT:AD:DP:GQ:PL 1/1:0,296:297:99:7711,808,0 chrXII 507213 . G A 7281.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=15.1857;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=24.68;SB=-3.213e+03 GT:AD:DP:GQ:PL 1/1:0,294:295:99:7281,745,0 chrXII 507486 . A C 1801 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=14.41;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1834,198,0 chrXII 507812 . A G 1933 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=24.47;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1966,216,0 chrXII 507917 . G A 2474 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.74;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2507,258,0 chrXII 507953 . A G 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.829;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.514;QD=23.14;ReadPosRankSum=1.705;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2995,327,0 chrXII 508024 . A G 2323 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.31;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2356,249,0 chrXII 508028 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=24.07;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2536,258,0 chrXII 508091 . T C 1445 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.94;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1478,159,0 chrXII 508184 . G A 1885 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1918,204,0 chrXII 508274 . C T 815 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.90;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:848,87,0 chrXII 508294 . G A 938 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.33;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:971,102,0 chrXII 508385 . C T 1244 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.92;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1277,132,0 chrXII 508472 . T A 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.667;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.0387;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.062;QD=24.02;ReadPosRankSum=2.890;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:2003,213,0 chrXII 508529 . T A 3362.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.0755;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.86;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3362,346,0 chrXII 508611 . A G 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=113;Dels=0.00;FS=9.778;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.185;QD=24.70;ReadPosRankSum=2.384;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2824,294,0 chrXII 508649 . T C 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.536;QD=23.18;ReadPosRankSum=1.699;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2490,270,0 chrXII 508718 . G T 3428.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.64;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3428,355,0 chrXII 508853 . C T 4663.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=15.7772;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.54;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4663,498,0 chrXII 508892 . A G 4587.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.8385;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.27;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4587,487,0 chrXII 508920 . G T 4391.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.42;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4391,465,0 chrXII 508979 . C T 4803.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.02;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4803,505,0 chrXII 509279 . G A 8364.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=19.0217;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=25.19;SB=-4.140e+03 GT:AD:DP:GQ:PL 1/1:0,331:332:99:8364,862,0 chrXII 509324 . T C 6870.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=7.3879;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.77;SB=-3.827e+03 GT:AD:DP:GQ:PL 1/1:0,288:289:99:6870,724,0 chrXII 509342 . G A 6276.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.42;SB=-3.524e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:6276,655,0 chrXII 509438 . A C 7731.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=15.2186;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.50;SB=-3.892e+03 GT:AD:DP:GQ:PL 1/1:0,328:329:99:7731,832,0 chrXII 509612 . C A 7069.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=17.3761;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.16;SB=-3.134e+03 GT:AD:DP:GQ:PL 1/1:0,315:319:99:7069,768,0 chrXII 509642 . G A 7038.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=13.2322;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.63;SB=-3.116e+03 GT:AD:DP:GQ:PL 1/1:0,308:311:99:7038,754,0 chrXII 509796 . G C 6455.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=19.3323;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.49;SB=-3.514e+03 GT:AD:DP:GQ:PL 1/1:0,284:287:99:6455,705,0 chrXII 510379 . T C 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=0.852;QD=23.07;ReadPosRankSum=1.705;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2986,324,0 chrXII 510469 . T C 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.0841;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-0.977;QD=14.41;ReadPosRankSum=1.655;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:2626,288,0 chrXII 510486 . T A 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;MQRankSum=-1.318;QD=12.60;ReadPosRankSum=1.698;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:2566,276,0 chrXII 510507 . C T 4307.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=16.31;SB=-3.126e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:4307,448,0 chrXII 510559 . C T 5587.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=16.1236;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.00;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:5587,574,0 chrXII 510901 . C T 4921.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.9349;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;QD=21.87;SB=-2.986e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:4921,511,0 chrXII 511071 . A C 5602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=233;Dels=0.00;FS=3.485;HaplotypeScore=12.1934;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.239;QD=24.04;ReadPosRankSum=1.687;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:5602,601,0 chrXII 511197 . C T 5414.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=13.5254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5414,594,0 chrXII 511739 . T C 3608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=190;Dels=0.00;FS=6.470;HaplotypeScore=19.7230;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=0.539;QD=18.99;ReadPosRankSum=2.346;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:3608,387,0 chrXII 511884 . C T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3743,382,0 chrXII 512119 . C T 1769 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1802,183,0 chrXII 512571 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.5181;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.53;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3529,364,0 chrXII 513001 . A T 195.03 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=12.19;SB=-5.704e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:24:228,24,0 chrXII 513012 . C T 229.01 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=15.27;SB=-5.902e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:27:262,27,0 chrXII 513649 . C T 6875.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.96;SB=-4.211e+03 GT:AD:DP:GQ:PL 1/1:0,312:313:99:6875,715,0 chrXII 513651 . T C 6618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=313;Dels=0.00;FS=6.700;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.819;QD=21.14;ReadPosRankSum=2.395;SB=-4.048e+03 GT:AD:DP:GQ:PL 1/1:2,311:313:99:6618,706,0 chrXII 513765 . G C 6252.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.63;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,283:289:99:6252,661,0 chrXII 514236 . T C 3878.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=212;Dels=0.00;FS=2.965;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=-1.731;QD=18.29;ReadPosRankSum=2.345;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:3878,420,0 chrXII 514237 . A C 3801.01 SnpCluster AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=17.93;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3801,414,0 chrXII 514238 . A T 3919.01 SnpCluster AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=18.57;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:3919,417,0 chrXII 514581 . G C 3525.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.9521;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.36;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,186:192:99:3525,384,0 chrXII 514634 . A T 6226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.244;DP=321;Dels=0.00;FS=2.398;HaplotypeScore=27.0879;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.188;QD=19.40;ReadPosRankSum=3.282;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:4,316:321:99:6226,652,0 chrXII 514832 . G A 2825 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.9770;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.09;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2858,303,0 chrXII 514845 . A C 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.461;QD=19.02;ReadPosRankSum=1.682;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2677,285,0 chrXII 514922 . G A 2800 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.53;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2833,288,0 chrXII 514979 . A G 1938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=137;Dels=0.00;FS=10.084;HaplotypeScore=3.5017;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-0.139;QD=14.15;ReadPosRankSum=2.394;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:2,131:137:99:1971,225,0 chrXII 515006 . C G 2321 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=16.58;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2354,264,0 chrXII 515081 . C A 2113 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.01;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2146,228,0 chrXII 515236 . C G 4286.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.3738;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.55;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4286,451,0 chrXII 515450 . G A 5080.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=21.1911;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:5080,526,0 chrXII 515516 . T A 6480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=25.5369;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.442;QD=23.65;ReadPosRankSum=1.719;SB=-3.203e+03 GT:AD:DP:GQ:PL 1/1:1,273:274:99:6480,667,0 chrXII 515570 . T C 7480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=314;Dels=0.00;FS=5.377;HaplotypeScore=18.4712;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.801;QD=23.82;ReadPosRankSum=2.965;SB=-3.133e+03 GT:AD:DP:GQ:PL 1/1:3,309:314:99:7480,805,0 chrXII 516197 . G A 6791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=18.5829;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.084;QD=21.77;ReadPosRankSum=-0.905;SB=-2.986e+03 GT:AD:DP:GQ:PL 1/1:1,309:312:99:6791,706,0 chrXII 516236 . G T 6355.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=19.7447;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.25;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:0,296:299:99:6355,688,0 chrXII 516896 . C T 4677.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.9152;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.15;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4677,487,0 chrXII 517094 . G A 4606.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.47;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:4606,498,0 chrXII 517114 . A G 5087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=237;Dels=0.00;FS=3.011;HaplotypeScore=7.4523;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.517;QD=21.46;ReadPosRankSum=2.418;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:2,235:237:99:5087,538,0 chrXII 517338 . A G 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.4762;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.893;QD=23.88;ReadPosRankSum=1.714;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4562,487,0 chrXII 517579 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.66;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3070,315,0 chrXII 517614 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.9838;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.77;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3098,321,0 chrXII 517747 . T C 2279 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.53;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2312,246,0 chrXII 517820 . A G 1577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.00;FS=3.102;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.722;QD=16.26;ReadPosRankSum=1.660;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1610,174,0 chrXII 518095 . C A 3794.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=25.29;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3794,397,0 chrXII 518201 . T C 2515 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.07;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2548,273,0 chrXII 518231 . G C 1975 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.75;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2008,219,0 chrXII 518290 . T C 2974 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.79;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3007,315,0 chrXII 518452 . A G 4267.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.95;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:4267,465,0 chrXII 518559 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.87;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3358,351,0 chrXII 518617 . A G 4764.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.06;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4764,516,0 chrXII 519157 . A T 2603 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.99;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2636,279,0 chrXII 519163 . G T 2436 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=19.97;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2469,264,0 chrXII 519349 . C A 3439.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.92;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3439,352,0 chrXII 519431 . A G 4232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=3.156;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=0.038;QD=23.25;ReadPosRankSum=1.694;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4232,450,0 chrXII 519439 . C T 4112.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=22.47;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4112,435,0 chrXII 519646 . A C 4825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.833;QD=24.62;ReadPosRankSum=1.184;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4825,517,0 chrXII 519666 . A G 4353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=3.240;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-1.178;QD=24.73;ReadPosRankSum=1.712;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4353,465,0 chrXII 519688 . G A 3801.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=22.49;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3801,399,0 chrXII 520061 . C A 2774 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2807,291,0 chrXII 520933 . T C 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=170;Dels=0.00;FS=10.165;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.946;QD=22.12;ReadPosRankSum=2.959;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:3761,408,0 chrXII 521114 . T C 3106 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.0182;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3139,333,0 chrXII 521146 . A T 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=149;Dels=0.00;FS=3.035;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.272;QD=22.69;ReadPosRankSum=2.318;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3381,357,0 chrXII 521277 . A G 4222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=195;Dels=0.00;FS=10.328;HaplotypeScore=30.2685;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.932;QD=21.65;ReadPosRankSum=2.932;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:3,188:195:99:4222,445,0 chrXII 521380 . G A 3286.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3286,363,0 chrXII 521689 . A T 7226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=6.4196;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.573;QD=24.92;ReadPosRankSum=1.720;SB=-3.533e+03 GT:AD:DP:GQ:PL 1/1:1,289:290:99:7226,751,0 chrXII 521975 . A G 4091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.543;QD=22.36;ReadPosRankSum=1.713;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4091,441,0 chrXII 522608 . A G 4200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=175;Dels=0.00;FS=5.970;HaplotypeScore=16.5167;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.425;QD=24.00;ReadPosRankSum=2.960;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:3,170:175:99:4200,450,0 chrXII 522914 . G C 5079.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.54;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:5079,544,0 chrXII 522946 . A G 5460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.597;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.9712;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.907;QD=23.53;ReadPosRankSum=-1.582;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:5460,546,0 chrXII 523174 . C T 2795 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.84;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2828,303,0 chrXII 524918 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3611,381,0 chrXII 525196 . C T 6034.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.8804;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.01;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:6034,619,0 chrXII 525385 . T G 4440.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.77;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4440,469,0 chrXII 525539 . G A 4575.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=25.99;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4575,475,0 chrXII 525791 . G A 2773 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=18.74;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2806,294,0 chrXII 525800 . T C 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-0.664;QD=19.25;ReadPosRankSum=1.654;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2613,282,0 chrXII 526230 . A T 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=130;Dels=0.00;FS=6.401;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.143;QD=23.72;ReadPosRankSum=2.335;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:3117,324,0 chrXII 526265 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3137,330,0 chrXII 526397 . C T 3408.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=23.83;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3408,357,0 chrXII 526414 . C T 2882 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.87;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2915,297,0 chrXII 526550 . T A 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-1.013;QD=24.11;ReadPosRankSum=1.710;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3834,397,0 chrXII 526685 . C G 4031.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.6880;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.27;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4031,432,0 chrXII 526779 . T C 4419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.3240;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.407;QD=24.02;ReadPosRankSum=1.675;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4419,471,0 chrXII 526817 . C T 3453.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.01;FS=0.000;HaplotypeScore=3.7300;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=21.31;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,155:161:99:3453,355,0 chrXII 526820 . C T 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.3158;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-1.060;QD=20.32;ReadPosRankSum=1.543;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3353,346,0 chrXII 526847 . T A 3805.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.74;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3805,397,0 chrXII 526922 . G A 4202.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.3983;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.47;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4202,450,0 chrXII 527012 . A G 3828.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.4912;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=24.23;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3828,405,0 chrXII 527111 . T C 4900.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.5702;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.50;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4900,520,0 chrXII 527582 . G C 4732.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=19.6382;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.32;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4732,507,0 chrXII 527715 . T C 6021.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=13.7522;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.98;SB=-3.006e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:6021,640,0 chrXII 527873 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8341;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.19;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2873,297,0 chrXII 528191 . T A 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.241;QD=24.66;ReadPosRankSum=1.709;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3649,367,0 chrXII 528743 . T C 3811.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.8776;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=18.50;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:3811,414,0 chrXII 528749 . T A 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=205;Dels=0.00;FS=6.798;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=1.264;QD=17.66;ReadPosRankSum=2.402;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:3621,390,0 chrXII 529055 . G A 6285.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=10.8001;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.55;SB=-3.292e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:6285,646,0 chrXII 529568 . T C 3752.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.28;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3752,393,0 chrXII 529574 . G A 3498.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.9841;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=19.22;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3498,381,0 chrXII 529586 . A G 3395.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.3728;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=18.35;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3395,360,0 chrXII 529715 . C T 5676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.521;QD=24.68;ReadPosRankSum=1.130;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5676,595,0 chrXII 530015 . G A 4251.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.8420;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.29;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4251,439,0 chrXII 530261 . C T 5232.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.45;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5232,547,0 chrXII 530350 . T G 4523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=206;Dels=0.00;FS=4.728;HaplotypeScore=14.0838;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.137;QD=21.96;ReadPosRankSum=1.681;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,201:206:99:4523,486,0 chrXII 530377 . G A 4410.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.21;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4410,460,0 chrXII 530558 . T C 1641 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.31;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1674,177,0 chrXII 530692 . C T 364 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:42:397,42,0 chrXII 530730 . T A 196.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.159;QD=16.34;ReadPosRankSum=1.448;SB=-2.903e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:24:229,24,0 chrXII 530780 . T A 1731 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.23;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1764,180,0 chrXII 531361 . A G 3934.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.50;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3934,429,0 chrXII 531751 . T C 3912.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.7827;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.57;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3912,420,0 chrXII 531847 . T C 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=162;Dels=0.00;FS=3.230;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.043;QD=22.52;ReadPosRankSum=1.711;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3649,393,0 chrXII 532084 . C T 3674.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3674,399,0 chrXII 532129 . T C 4354.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4354,471,0 chrXII 532181 . T C 3901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=173;Dels=0.00;FS=3.026;HaplotypeScore=15.9976;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.807;QD=22.55;ReadPosRankSum=2.421;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3901,414,0 chrXII 532381 . A G 4114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.194;DP=184;Dels=0.00;FS=12.771;HaplotypeScore=14.9338;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.210;QD=22.36;ReadPosRankSum=3.384;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:4,180:184:99:4114,438,0 chrXII 532477 . T C 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=3.211;HaplotypeScore=10.5254;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.687;QD=24.37;ReadPosRankSum=1.710;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3802,400,0 chrXII 532540 . A G 3931.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.21;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3931,417,0 chrXII 532555 . C G 3730.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.3434;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.44;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3730,396,0 chrXII 532723 . G A 3978.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.26;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3978,409,0 chrXII 532747 . A G 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=4.260;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.472;QD=21.72;ReadPosRankSum=1.712;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3844,414,0 chrXII 532789 . G A 3916.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.9232;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.64;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3916,406,0 chrXII 532861 . A G 3396.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.9333;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.64;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3396,360,0 chrXII 532984 . A G 4298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=186;Dels=0.00;FS=2.925;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.235;QD=23.11;ReadPosRankSum=2.423;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:2,181:186:99:4298,459,0 chrXII 533081 . A G 3650.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.81;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3650,387,0 chrXII 533801 . T C 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=158;Dels=0.00;FS=2.720;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.510;QD=22.92;ReadPosRankSum=2.324;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3621,393,0 chrXII 537571 . A G 6928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.342;DP=285;Dels=0.00;FS=24.278;HaplotypeScore=22.1727;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.620;QD=24.31;ReadPosRankSum=4.487;SB=-3.275e+03 GT:AD:DP:GQ:PL 1/1:7,276:285:99:6928,739,0 chrXII 543240 . T C 3033 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.15;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3066,318,0 chrXII 545567 . A C 4316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=177;Dels=0.00;FS=2.720;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.775;QD=24.38;ReadPosRankSum=2.408;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:4316,456,0 chrXII 545673 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9128;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.19;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2862,297,0 chrXII 548327 . A G 2972 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.16;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3005,321,0 chrXII 548452 . A G 2405 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2438,258,0 chrXII 548551 . G A 3032 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.50;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3065,315,0 chrXII 549297 . A G 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.324;DP=131;Dels=0.00;FS=2.425;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.823;QD=21.08;ReadPosRankSum=3.257;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:4,127:131:99:2795,300,0 chrXII 550373 . A C 1240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.980;DP=103;Dels=0.00;FS=1.454;HaplotypeScore=21.7550;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.524;QD=12.04;ReadPosRankSum=-0.548;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:8,95:103:75:1273,75,0 chrXII 552708 . C T 78.26 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=40.2336;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=1.53;SB=-1.903e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:15:111,15,0 chrXII 552743 . C G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.069;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=170.2887;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;MQRankSum=2.743;QD=0.26;ReadPosRankSum=-3.198;SB=-1.676e+01 GT:AD:DP:GQ:PL 1/1:85,4:93:6:55,6,0 chrXII 552744 . T A 21.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=170.2887;MLEAC=1;MLEAF=0.500;MQ=45.21;MQ0=0;MQRankSum=2.849;QD=0.20;ReadPosRankSum=-2.619;SB=-2.102e+01 GT:AD:DP:GQ:PL 0/1:103,4:107:21:51,0,21 chrXII 552832 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=26.84;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2771,291,0 chrXII 552874 . G A 2350 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=23.50;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2383,252,0 chrXII 553063 . A G 5099.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=6.1317;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=20.98;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5099,538,0 chrXII 553070 . T A 5049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=10.0204;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.509;QD=21.39;ReadPosRankSum=1.644;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:1,234:236:99:5049,517,0 chrXII 553129 . G A 5828.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.89;SB=-3.515e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:99:5828,607,0 chrXII 553147 . C T 6033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.680;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=11.8094;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.656;QD=21.47;ReadPosRankSum=1.027;SB=-3.721e+03 GT:AD:DP:GQ:PL 1/1:1,279:281:99:6033,649,0 chrXII 553705 . G A 231 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=183.9804;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=1.18;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:30:264,30,0 chrXII 554204 . C T 5898.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=12.7634;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.09;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,264:267:99:5898,619,0 chrXII 554261 . C T 5758.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=23.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:5758,604,0 chrXII 554450 . A G 3778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=171;Dels=0.00;FS=3.680;HaplotypeScore=12.0428;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.516;QD=22.09;ReadPosRankSum=1.691;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,167:171:99:3778,408,0 chrXII 554490 . C T 4568.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4568,489,0 chrXII 554694 . C G 5451.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=23.8479;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.49;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:0,261:266:99:5451,591,0 chrXII 554931 . G A 5387.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.08;SB=-3.197e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5387,556,0 chrXII 554937 . A G 5187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=251;Dels=0.00;FS=6.073;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.173;QD=20.67;ReadPosRankSum=2.948;SB=-3.257e+03 GT:AD:DP:GQ:PL 1/1:3,246:251:99:5187,547,0 chrXII 555432 . T G 7382.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=13.7287;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.66;SB=-3.853e+03 GT:AD:DP:GQ:PL 1/1:0,309:312:99:7382,802,0 chrXII 555993 . A G 5262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=231;Dels=0.00;FS=2.955;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.240;QD=22.78;ReadPosRankSum=2.428;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:2,228:231:99:5262,570,0 chrXII 556056 . C T 6662.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=29.6333;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=24.23;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,272:275:99:6662,691,0 chrXII 556347 . G A 470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.441;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=1.218;QD=2.33;ReadPosRankSum=0.617;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:1,201:202:57:503,57,0 chrXII 556350 . G A 606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.414;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=1.290;QD=3.09;ReadPosRankSum=0.831;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:1,195:196:72:639,72,0 chrXII 556610 . T C 1909 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.796;QD=25.80;ReadPosRankSum=1.685;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1942,204,0 chrXII 556879 . G A 3277.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.27;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3277,342,0 chrXII 556997 . G C 3670.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.85;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3670,396,0 chrXII 557014 . G A 3840.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.82;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3840,388,0 chrXII 557324 . A G 4536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.074;QD=22.57;ReadPosRankSum=1.715;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4536,481,0 chrXII 557420 . A G 5396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=246;Dels=0.00;FS=3.028;HaplotypeScore=11.6772;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.917;QD=21.93;ReadPosRankSum=2.419;SB=-3.023e+03 GT:AD:DP:GQ:PL 1/1:2,243:246:99:5396,583,0 chrXII 557450 . G A 6397.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=18.3676;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.13;SB=-3.752e+03 GT:AD:DP:GQ:PL 1/1:0,287:289:99:6397,679,0 chrXII 557852 . G A 5253.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=23.88;SB=-3.032e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5253,535,0 chrXII 557861 . C G 4811.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=22.17;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4811,522,0 chrXII 557933 . C T 3682.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.8969;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.01;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3682,388,0 chrXII 557979 . C T 4345.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.86;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4345,439,0 chrXII 558150 . T G 5396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.191;QD=25.82;ReadPosRankSum=1.682;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:5396,562,0 chrXII 558665 . C T 5119.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=16.8032;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.22;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5119,532,0 chrXII 558764 . A T 4259.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.06;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4259,448,0 chrXII 558945 . C T 4317.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.37;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4317,448,0 chrXII 558960 . C T 4259.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.19;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4259,453,0 chrXII 559511 . C T 4626.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.5898;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.48;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4626,495,0 chrXII 559667 . A G 5314.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=14.5505;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5314,556,0 chrXII 559898 . G A 6226.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=14.2285;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.89;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:6226,655,0 chrXII 560519 . G A 1826 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.71;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1859,192,0 chrXII 561785 . T G 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=135;Dels=0.00;FS=6.527;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.137;QD=24.96;ReadPosRankSum=2.376;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3369,354,0 chrXII 561975 . T A 5570.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=15.5553;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.98;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5570,586,0 chrXII 562046 . T C 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=165;Dels=0.00;FS=3.017;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.707;QD=22.21;ReadPosRankSum=2.360;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3665,399,0 chrXII 562070 . T C 4043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=171;Dels=0.00;FS=3.522;HaplotypeScore=5.1273;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.922;QD=23.64;ReadPosRankSum=1.671;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4043,421,0 chrXII 562305 . C G 3882.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.11;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3882,411,0 chrXII 563186 . T C 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=187;Dels=0.00;FS=11.087;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-0.076;QD=22.11;ReadPosRankSum=2.952;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:3,183:187:99:4134,435,0 chrXII 563207 . T C 3287.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.02;FS=0.000;HaplotypeScore=6.8206;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=19.57;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3287,345,0 chrXII 563208 . T C 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=167;Dels=0.01;FS=7.050;HaplotypeScore=8.3979;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=0.629;QD=19.58;ReadPosRankSum=2.361;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3270,345,0 chrXII 563516 . T C 157.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.823;DP=30;Dels=0.00;FS=21.004;HaplotypeScore=10.6483;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=1.783;QD=5.24;ReadPosRankSum=-2.823;SB=-4.759e-02 GT:AD:DP:GQ:PL 1/1:3,25:30:21:190,21,0 chrXII 563526 . T G 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;DP=16;Dels=0.00;FS=21.553;HaplotypeScore=10.8023;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=1.794;QD=1.44;ReadPosRankSum=-0.289;SB=-8.581e-03 GT:AD:DP:GQ:PL 0/1:8,7:16:30:53,0,30 chrXII 563582 . C A 1208 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1241,138,0 chrXII 567957 . C T 2739 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.82;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2772,285,0 chrXII 568048 . G A 2475 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.12;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2508,267,0 chrXII 568114 . A T 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.9046;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.323;QD=26.13;ReadPosRankSum=1.650;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3319,348,0 chrXII 568449 . A T 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=137;Dels=0.00;FS=7.068;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.601;QD=22.39;ReadPosRankSum=2.360;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3100,330,0 chrXII 568546 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.41;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3451,360,0 chrXII 568917 . T C 4117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.402;QD=24.51;ReadPosRankSum=1.711;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4117,447,0 chrXII 569539 . C T 3713.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.3336;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.84;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3713,390,0 chrXII 570032 . G A 3829.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.23;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3829,385,0 chrXII 570428 . A C 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;DP=143;Dels=0.00;FS=8.141;HaplotypeScore=10.8667;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.450;QD=22.17;ReadPosRankSum=3.311;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:4,138:143:99:3204,348,0 chrXII 570676 . T C 2208 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2241,237,0 chrXII 570786 . T C 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.982;QD=26.00;ReadPosRankSum=2.398;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3770,402,0 chrXII 570914 . G A 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.630;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.1309;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.710;QD=25.60;ReadPosRankSum=1.417;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3968,409,0 chrXII 571412 . C T 5482.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=14.7114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5482,556,0 chrXII 571751 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=3.039;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.141;QD=22.14;ReadPosRankSum=2.317;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3276,351,0 chrXII 571772 . T C 3493.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.98;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3493,372,0 chrXII 571809 . G T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=22.07;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3553,367,0 chrXII 571826 . A G 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=146;Dels=0.00;FS=5.273;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=-0.368;QD=19.40;ReadPosRankSum=3.362;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:4,141:146:99:2865,309,0 chrXII 572011 . G A 2678 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.29;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2711,285,0 chrXII 572164 . T C 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.799;QD=23.34;ReadPosRankSum=2.379;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:2,138:142:99:3314,351,0 chrXII 572186 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.29;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3633,393,0 chrXII 572294 . G A 2349 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.08;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2382,258,0 chrXII 572946 . T C 4246.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.4594;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.11;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4246,453,0 chrXII 574950 . T C 5148.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.29;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:5148,544,0 chrXII 575473 . T G 4312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=183;Dels=0.00;FS=5.230;HaplotypeScore=17.4443;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.434;QD=23.56;ReadPosRankSum=2.841;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:3,180:183:99:4312,468,0 chrXII 576016 . G A 7536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=18.5870;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.679;QD=22.98;ReadPosRankSum=0.779;SB=-4.259e+03 GT:AD:DP:GQ:PL 1/1:1,326:328:99:7536,774,0 chrXII 577821 . T C 1971 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.59;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2004,216,0 chrXII 588666 . G A 2772 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.7583;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.75;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2805,285,0 chrXII 591345 . G T 2975 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=24.39;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3008,321,0 chrXII 591465 . A T 1761 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1794,183,0 chrXII 591552 . G A 2315 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=24.89;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2348,240,0 chrXII 591568 . G T 2117 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=24.06;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2150,222,0 chrXII 591955 . G T 1693 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.57;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1726,177,0 chrXII 591978 . C A 1616 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.55;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1649,177,0 chrXII 592353 . G A 3772.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.06;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3772,405,0 chrXII 592578 . C T 3084 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=24.09;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3117,330,0 chrXII 592754 . T G 2828 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=23.97;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2861,306,0 chrXII 599102 . G A 1026 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=12.99;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1059,111,0 chrXII 599143 . A G 2616 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=23.57;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2649,282,0 chrXII 599195 . T C 2638 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=21.10;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2671,282,0 chrXII 599206 . A C 2737 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=20.73;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2770,300,0 chrXII 599482 . G T 2994 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.95;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3027,310,0 chrXII 601489 . A G 5058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=223;Dels=0.00;FS=10.133;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.356;QD=22.68;ReadPosRankSum=2.933;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:3,220:223:99:5058,538,0 chrXII 604895 . A C 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=3.485;HaplotypeScore=9.1278;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=1.039;QD=24.76;ReadPosRankSum=1.708;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3615,381,0 chrXII 605256 . G A 3734.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.91;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3734,385,0 chrXII 605537 . C A 2899 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=22.83;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2932,303,0 chrXII 607075 . C A 2845 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=17.67;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2878,303,0 chrXII 607090 . T C 2856 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.6761;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=17.96;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,156:159:99:2889,306,0 chrXII 607128 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=133.3675;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=18.04;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2974,312,0 chrXII 607134 . T C 2924 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=131.0014;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=1;QD=16.71;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:2957,315,0 chrXII 607171 . G A 2614 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=1;QD=17.90;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2647,279,0 chrXII 607200 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=1;QD=17.80;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2151,225,0 chrXII 607344 . C T 2464 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=23.69;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2497,261,0 chrXII 607531 . C T 3322.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=22.60;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3322,345,0 chrXII 607614 . G A 3472.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.7158;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=22.99;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3472,361,0 chrXII 607637 . G A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=22.33;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3283,340,0 chrXII 607680 . A G 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=0.392;QD=20.05;ReadPosRankSum=1.670;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3368,369,0 chrXII 607707 . A G 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;MQRankSum=-0.715;QD=20.01;ReadPosRankSum=1.708;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2895,309,0 chrXII 607722 . C T 2848 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=20.49;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2881,294,0 chrXII 607737 . A G 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;MQRankSum=-0.447;QD=19.11;ReadPosRankSum=1.676;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2403,261,0 chrXII 607779 . T C 1792 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;QD=18.29;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1825,198,0 chrXII 607790 . T C 1736 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=19.08;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1769,183,0 chrXII 607791 . T C 1683 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;QD=18.70;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1716,186,0 chrXII 607814 . A G 1862 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=20.02;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1895,204,0 chrXII 607922 . C T 2129 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=20.67;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2162,243,0 chrXII 607923 . T C 2140 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=20.58;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2173,246,0 chrXII 607998 . T G 2064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-1.618;QD=22.19;ReadPosRankSum=1.656;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,90:93:99:2097,231,0 chrXII 608022 . A G 2522 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=24.02;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2555,267,0 chrXII 608102 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.82;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2749,282,0 chrXII 608136 . G A 2530 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.3000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=20.08;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2563,267,0 chrXII 608154 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=18.72;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2335,243,0 chrXII 608155 . C T 2291 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=18.48;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2324,243,0 chrXII 608472 . C T 3412.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=24.72;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3412,363,0 chrXII 608666 . C T 3022 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=19.13;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3055,327,0 chrXII 608673 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;QD=16.61;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:2741,297,0 chrXII 608685 . T C 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=3.522;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;MQRankSum=-1.251;QD=16.71;ReadPosRankSum=1.684;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2439,255,0 chrXII 608709 . A G 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=137;Dels=0.00;FS=3.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;MQRankSum=-0.565;QD=14.91;ReadPosRankSum=2.342;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2076,222,0 chrXII 608724 . C T 2131 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=15.79;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2164,231,0 chrXII 608748 . G A 2358 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=18.00;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2391,246,0 chrXII 609039 . T C 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=170;Dels=0.00;FS=7.497;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.947;QD=23.68;ReadPosRankSum=2.392;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4025,424,0 chrXII 609087 . G A 3574.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.51;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3574,370,0 chrXII 609126 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=24.53;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2756,279,0 chrXII 609213 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3721,402,0 chrXII 609308 . G A 2914 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.50;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2947,309,0 chrXII 609380 . G A 4614.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=25.08;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4614,487,0 chrXII 609488 . A T 4619.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.45;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4619,472,0 chrXII 609555 . A G 4880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=213;Dels=0.00;FS=10.322;HaplotypeScore=9.8323;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=1.288;QD=22.91;ReadPosRankSum=2.948;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:3,210:213:99:4880,517,0 chrXII 609572 . A G 4622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=219;Dels=0.00;FS=6.324;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.353;QD=21.11;ReadPosRankSum=2.405;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:4622,487,0 chrXII 609589 . G T 4672.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.1312;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.14;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4672,496,0 chrXII 609688 . C T 5130.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.4399;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.43;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5130,535,0 chrXII 609791 . G A 5709.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=14.8725;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.29;SB=-2.809e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:5709,618,0 chrXII 610678 . C T 5967.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=22.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.40;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5967,616,0 chrXII 611179 . T C 7059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.094;DP=331;Dels=0.00;FS=9.005;HaplotypeScore=35.6215;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.744;QD=21.33;ReadPosRankSum=3.435;SB=-3.794e+03 GT:AD:DP:GQ:PL 1/1:4,327:331:99:7059,769,0 chrXII 611769 . C T 5642.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=9.3233;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=22.13;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5642,577,0 chrXII 611779 . A G 5547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.046;DP=283;Dels=0.00;FS=8.884;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;MQRankSum=-0.811;QD=19.60;ReadPosRankSum=1.810;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:2,278:283:99:5547,603,0 chrXII 611812 . T A 4800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=-1.268;QD=17.78;ReadPosRankSum=1.668;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:1,269:270:99:4800,502,0 chrXII 611853 . C G 4818.01 PASS AC=2;AF=1.00;AN=2;DP=355;Dels=0.00;FS=0.000;HaplotypeScore=12.7771;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=13.57;SB=-4.207e+03 GT:AD:DP:GQ:PL 1/1:0,352:355:99:4818,517,0 chrXII 611973 . G A 5693.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=22.96;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5693,580,0 chrXII 611994 . A G 5348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=3.5291;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=0.988;QD=22.01;ReadPosRankSum=-0.014;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,241:243:99:5348,574,0 chrXII 612183 . A G 1918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;MQRankSum=-0.394;QD=18.27;ReadPosRankSum=1.664;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,100:105:99:1951,213,0 chrXII 612202 . A G 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=-1.375;QD=17.08;ReadPosRankSum=1.696;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:1,96:99:99:1724,183,0 chrXII 612238 . C T 1601 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.77;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1634,177,0 chrXII 612358 . T C 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.2816;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.241;QD=24.34;ReadPosRankSum=1.703;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2978,318,0 chrXII 612479 . C T 4421.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=26.63;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4421,448,0 chrXII 612516 . T C 4436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=178;Dels=0.00;FS=2.592;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.277;QD=24.92;ReadPosRankSum=2.408;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4436,466,0 chrXII 612562 . T G 4965.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.5184;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.64;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,206:210:99:4965,534,0 chrXII 612708 . T C 4600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=246;Dels=0.00;FS=2.954;HaplotypeScore=12.7521;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.981;QD=18.70;ReadPosRankSum=2.379;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:2,242:246:99:4600,501,0 chrXII 612729 . C T 4882.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=19.53;SB=-3.392e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:4882,511,0 chrXII 612784 . G T 5426.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.36;SB=-3.331e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5426,553,0 chrXII 612958 . A C 6048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=18.8201;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-1.102;QD=23.63;ReadPosRankSum=1.691;SB=-3.229e+03 GT:AD:DP:GQ:PL 1/1:1,252:256:99:6048,643,0 chrXII 613113 . G T 4997.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.24;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4997,514,0 chrXII 613218 . A G 5454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=241;Dels=0.00;FS=3.217;HaplotypeScore=11.1994;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=0.168;QD=22.63;ReadPosRankSum=1.688;SB=-3.026e+03 GT:AD:DP:GQ:PL 1/1:1,236:241:99:5454,586,0 chrXII 613368 . C T 6013.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=10.6018;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.38;SB=-3.155e+03 GT:AD:DP:GQ:PL 1/1:0,294:295:99:6013,628,0 chrXII 613380 . A C 5943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=299;Dels=0.00;FS=4.419;HaplotypeScore=5.6795;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.913;QD=19.88;ReadPosRankSum=1.720;SB=-2.917e+03 GT:AD:DP:GQ:PL 1/1:1,296:299:99:5943,631,0 chrXII 613464 . T C 4883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=241;Dels=0.00;FS=7.168;HaplotypeScore=10.2100;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.560;QD=20.26;ReadPosRankSum=2.419;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:2,237:241:99:4883,528,0 chrXII 613479 . G A 4318.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=19.99;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4318,448,0 chrXII 613482 . T C 4083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=213;Dels=0.00;FS=3.693;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=-0.919;QD=19.17;ReadPosRankSum=1.716;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4083,438,0 chrXII 613527 . C T 4491.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.87;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4491,466,0 chrXII 613846 . G A 3766.01 SnpCluster AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.5332;MLEAC=2;MLEAF=1.00;MQ=33.06;MQ0=0;QD=18.11;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3766,394,0 chrXII 613848 . C G 3601.01 SnpCluster AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.7339;MLEAC=2;MLEAF=1.00;MQ=32.11;MQ0=0;QD=17.74;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:3601,384,0 chrXII 613851 . T C 3573.01 SnpCluster AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.9586;MLEAC=2;MLEAF=1.00;MQ=31.22;MQ0=0;QD=17.34;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:3573,375,0 chrXII 613857 . A G 3505.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.968;DP=221;Dels=0.00;FS=5.491;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=30.88;MQ0=0;MQRankSum=-1.333;QD=15.86;ReadPosRankSum=2.968;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:3,217:220:99:3505,375,0 chrXII 613864 . C A 3536.01 SnpCluster AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;QD=16.76;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:3536,367,0 chrXII 613866 . C T 3596.01 SnpCluster AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;QD=16.73;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:3596,367,0 chrXII 613867 . C T 3575.01 SnpCluster AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.93;MQ0=0;QD=16.55;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:3575,364,0 chrXII 613890 . C T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=40.02;MQ0=0;QD=16.68;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:3752,402,0 chrXII 614067 . G T 2502 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;QD=20.51;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2535,267,0 chrXII 614178 . G C 900 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.45;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,43:44:99:933,99,0 chrXII 614304 . A G 709 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=61.04;MQ0=0;QD=22.87;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:81:742,81,0 chrXII 614403 . T C 1768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.48;MQ0=0;MQRankSum=-0.957;QD=26.39;ReadPosRankSum=1.629;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1801,192,0 chrXII 614604 . A G 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=4.177;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.982;QD=23.63;ReadPosRankSum=1.688;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3710,402,0 chrXII 614915 . A G 4302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=187;Dels=0.00;FS=3.034;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.742;QD=23.01;ReadPosRankSum=2.383;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:2,182:187:99:4302,459,0 chrXII 616056 . C T 4257.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.33;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4257,448,0 chrXII 616318 . G C 2861 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.9329;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.18;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2894,312,0 chrXII 616887 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.73;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2769,297,0 chrXII 617208 . G T 5081.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5081,529,0 chrXII 617372 . A T 3882.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3882,397,0 chrXII 617651 . A G 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.379;DP=174;Dels=0.00;FS=5.243;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.278;QD=22.55;ReadPosRankSum=3.409;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:4,169:174:99:3923,412,0 chrXII 617706 . A G 4422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.1735;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.038;QD=23.90;ReadPosRankSum=1.713;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4422,472,0 chrXII 617865 . G A 2166 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.03;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2199,234,0 chrXII 618108 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2926,297,0 chrXII 618279 . T C 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=139;Dels=0.00;FS=5.940;HaplotypeScore=10.5010;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.146;QD=24.38;ReadPosRankSum=2.891;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:3,135:139:99:3389,357,0 chrXII 619023 . T C 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.607;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=12.3950;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.309;QD=20.90;ReadPosRankSum=2.564;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:3,92:96:99:2039,216,0 chrXII 619341 . T C 4769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=210;Dels=0.00;FS=3.358;HaplotypeScore=15.9783;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.067;QD=22.71;ReadPosRankSum=1.699;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:1,207:210:99:4769,505,0 chrXII 619476 . T C 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.01;FS=3.358;HaplotypeScore=20.1236;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.643;QD=22.72;ReadPosRankSum=1.697;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4498,495,0 chrXII 619650 . A G 4617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.101;DP=204;Dels=0.00;FS=8.614;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.192;QD=22.63;ReadPosRankSum=3.383;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:4,200:204:99:4617,490,0 chrXII 619731 . T C 4092.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.86;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4092,432,0 chrXII 619752 . G A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.97;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4204,436,0 chrXII 619971 . T G 4129.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.58;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4129,450,0 chrXII 620541 . T C 5187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=209;Dels=0.00;FS=2.578;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.241;QD=24.82;ReadPosRankSum=2.367;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:5187,556,0 chrXII 620961 . G A 3839.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3839,420,0 chrXII 621039 . A C 5183.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.0429;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.92;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5183,553,0 chrXII 621336 . G A 3569.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.49;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3569,367,0 chrXII 621513 . T A 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.314;QD=26.58;ReadPosRankSum=1.686;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3960,406,0 chrXII 621546 . C T 4024.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.65;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4024,418,0 chrXII 621672 . G T 3316.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.41;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3316,348,0 chrXII 621897 . G A 3778.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.06;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3778,382,0 chrXII 622068 . T C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.7454;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.386;QD=21.43;ReadPosRankSum=1.686;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3248,342,0 chrXII 622344 . C T 4547.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.98;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4547,466,0 chrXII 622969 . A G 1930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=8.540;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.117;QD=26.08;ReadPosRankSum=2.383;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1963,207,0 chrXII 622999 . A G 1790 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.19;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1823,198,0 chrXII 623059 . A G 2535 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2568,285,0 chrXII 623494 . G A 4408.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4408,451,0 chrXII 623830 . C G 6291.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=7.4491;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.06;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:6291,676,0 chrXII 624955 . T C 2316 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.27;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2349,252,0 chrXII 625037 . T C 1969 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.7017;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=15.63;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2002,222,0 chrXII 625055 . A G 1405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=72.5176;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=-1.454;QD=12.43;ReadPosRankSum=1.701;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,111:113:99:1438,156,0 chrXII 626422 . T A 694 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.83;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:727,75,0 chrXII 627007 . T C 4802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=210;Dels=0.00;FS=6.073;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.841;QD=22.87;ReadPosRankSum=2.966;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:3,205:210:99:4802,505,0 chrXII 627201 . G C 4625.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.9089;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.84;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4625,495,0 chrXII 627274 . T A 4588.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.65;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4588,475,0 chrXII 627361 . C T 4015.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=21.70;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4015,415,0 chrXII 627370 . G A 3897.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.95;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3897,420,0 chrXII 627543 . T C 3805.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.63;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3805,400,0 chrXII 628215 . G T 3117 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.26;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3150,336,0 chrXII 628274 . G C 3610.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=23.59;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3610,381,0 chrXII 628361 . A T 2059 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.80;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2092,216,0 chrXII 628365 . C A 2206 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=22.51;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2239,228,0 chrXII 628424 . A G 2110 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.89;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2143,225,0 chrXII 629017 . T C 3820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=163;Dels=0.00;FS=3.013;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.887;QD=23.44;ReadPosRankSum=2.419;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3820,408,0 chrXII 629441 . C T 3884.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.4600;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3884,406,0 chrXII 629690 . T C 3328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.228;DP=145;Dels=0.00;FS=13.242;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.626;QD=22.95;ReadPosRankSum=3.398;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:4,140:145:99:3328,348,0 chrXII 629746 . C T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3537,378,0 chrXII 629914 . A G 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=146;Dels=0.00;FS=3.318;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.119;QD=23.53;ReadPosRankSum=1.685;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3436,369,0 chrXII 629974 . A G 2947 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2980,330,0 chrXII 630048 . G A 3535.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.07;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3535,361,0 chrXII 630314 . A G 2611 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.58;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2644,279,0 chrXII 630870 . C T 5634.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=15.4649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-3.408e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5634,580,0 chrXII 630917 . T C 5198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=250;Dels=0.00;FS=3.063;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.551;QD=20.79;ReadPosRankSum=1.718;SB=-3.238e+03 GT:AD:DP:GQ:PL 1/1:1,248:250:99:5198,553,0 chrXII 630958 . A G 4045.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.9963;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.53;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4045,438,0 chrXII 631177 . G A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=17.7348;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.92;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3347,351,0 chrXII 632067 . T C 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.8844;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-0.208;QD=17.95;ReadPosRankSum=1.692;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3211,336,0 chrXII 632078 . G C 3095 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=17.49;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3128,333,0 chrXII 632381 . A C 4096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=197;Dels=0.00;FS=3.013;HaplotypeScore=13.5361;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.825;QD=20.79;ReadPosRankSum=2.412;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:2,193:197:99:4096,432,0 chrXII 632596 . A G 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.501;QD=23.44;ReadPosRankSum=1.681;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3198,339,0 chrXII 632671 . G A 2536 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.86;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2569,267,0 chrXII 632837 . T A 2057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=3.195;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.108;QD=21.43;ReadPosRankSum=1.696;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2090,225,0 chrXII 632910 . T C 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;MQRankSum=0.946;QD=24.01;ReadPosRankSum=1.703;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2890,309,0 chrXII 632986 . A G 2562 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.72;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2595,282,0 chrXII 633127 . A G 2842 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;QD=18.34;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2875,312,0 chrXII 633130 . G A 2927 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.42;MQ0=0;QD=17.74;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2960,309,0 chrXII 633149 . C T 2606 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.33;MQ0=0;QD=14.40;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:2639,276,0 chrXII 633163 . G A 3371.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=16.36;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:3371,354,0 chrXII 633199 . G A 4889.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.56;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:4889,514,0 chrXII 633302 . T C 4706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.795;QD=22.63;ReadPosRankSum=1.715;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4706,513,0 chrXII 633316 . G A 4375.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.4426;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=23.03;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4375,459,0 chrXII 633347 . G T 4374.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=19.44;SB=-3.110e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4374,457,0 chrXII 633355 . T C 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;MQRankSum=-0.628;QD=18.72;ReadPosRankSum=1.717;SB=-3.053e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:4286,462,0 chrXII 633477 . A G 4679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=256;Dels=0.00;FS=2.768;HaplotypeScore=17.7154;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.420;QD=18.28;ReadPosRankSum=2.430;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:2,253:256:99:4679,510,0 chrXII 633782 . C T 3869.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=25.62;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3869,397,0 chrXII 634219 . C T 3133 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8687;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=25.68;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3166,319,0 chrXII 634488 . G A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.45;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4035,424,0 chrXII 634506 . A C 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=4.901;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.061;QD=21.58;ReadPosRankSum=1.691;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3690,390,0 chrXII 634590 . A C 4146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=186;Dels=0.00;FS=2.887;HaplotypeScore=11.9940;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=1.689;QD=22.29;ReadPosRankSum=2.423;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:2,182:186:99:4146,439,0 chrXII 634602 . C T 3976.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.67;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3976,409,0 chrXII 634860 . C T 3316.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=26.74;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3316,348,0 chrXII 635025 . A G 2359 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2392,252,0 chrXII 635187 . T C 3699.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.69;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3699,399,0 chrXII 635220 . G A 3711.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.6021;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.91;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3711,385,0 chrXII 635382 . C T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=21.05;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3495,375,0 chrXII 635391 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=168;Dels=0.00;FS=6.095;HaplotypeScore=7.7318;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=0.211;QD=20.26;ReadPosRankSum=2.958;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3403,363,0 chrXII 635617 . G T 3962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=1.221;QD=25.40;ReadPosRankSum=0.600;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3962,403,0 chrXII 635886 . A G 5009.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.52;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5009,537,0 chrXII 636132 . A G 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=134;Dels=0.00;FS=5.525;HaplotypeScore=11.4883;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.538;QD=22.29;ReadPosRankSum=2.947;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:3,130:134:99:3020,324,0 chrXII 636165 . T A 3200 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8156;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.62;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3233,333,0 chrXII 636269 . G A 2104 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.12;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2137,222,0 chrXII 636684 . A T 1773 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=20.62;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1806,189,0 chrXII 636690 . T A 1819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-0.231;QD=20.21;ReadPosRankSum=1.694;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1852,192,0 chrXII 637193 . C A 9159.01 filter AC=2;AF=1.00;AN=2;DP=378;Dels=0.00;FS=0.000;HaplotypeScore=15.9137;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.23;SB=-4.993e+03 GT:AD:DP:GQ:PL 1/1:0,378:378:99:9159,979,0 chrXII 637236 . A T 8154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=328;Dels=0.00;FS=3.545;HaplotypeScore=26.0788;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.855;QD=24.86;ReadPosRankSum=1.711;SB=-4.080e+03 GT:AD:DP:GQ:PL 1/1:1,327:328:99:8154,844,0 chrXII 637467 . T C 7935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=337;Dels=0.00;FS=3.693;HaplotypeScore=14.2059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.249;QD=23.55;ReadPosRankSum=1.681;SB=-3.874e+03 GT:AD:DP:GQ:PL 1/1:1,336:337:99:7935,844,0 chrXII 638087 . C T 7560.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=25.9544;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.00;SB=-3.636e+03 GT:AD:DP:GQ:PL 1/1:0,312:315:99:7560,781,0 chrXII 638411 . G A 5799.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.20;SB=-3.292e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5799,616,0 chrXII 640445 . G A 4195.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.06;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4195,436,0 chrXII 641406 . A G 4434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=191;Dels=0.00;FS=3.545;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.182;QD=23.21;ReadPosRankSum=1.696;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4434,474,0 chrXII 641415 . C T 4404.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=24.47;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4404,460,0 chrXII 641462 . G A 2904 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.62;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2937,300,0 chrXII 641481 . A C 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.500;DP=151;Dels=0.00;FS=4.023;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.802;QD=19.23;ReadPosRankSum=1.662;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:2936,309,0 chrXII 642132 . A G 2904 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.8093;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.20;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2937,324,0 chrXII 642188 . T A 3009 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.66;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3042,315,0 chrXII 642387 . T C 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=6.456;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.426;QD=19.91;ReadPosRankSum=2.406;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2303,246,0 chrXII 642476 . A G 3796.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.18;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3796,405,0 chrXII 642557 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.375;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.8731;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.306;QD=25.00;ReadPosRankSum=-0.433;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3400,328,0 chrXII 642815 . A G 5039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=210;Dels=0.00;FS=3.292;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.510;QD=24.00;ReadPosRankSum=1.648;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:1,206:210:99:5039,549,0 chrXII 643838 . G A 5357.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=18.0190;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=24.35;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5357,544,0 chrXII 643914 . A G 5579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=241;Dels=0.00;FS=4.182;HaplotypeScore=15.6317;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.525;QD=23.15;ReadPosRankSum=1.703;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5579,612,0 chrXII 644075 . A G 4744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.562;QD=20.54;ReadPosRankSum=1.702;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,227:231:99:4744,513,0 chrXII 644081 . A G 4870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=232;Dels=0.00;FS=5.270;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.727;QD=20.99;ReadPosRankSum=2.918;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:3,229:232:99:4870,511,0 chrXII 644135 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.8143;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=18.43;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3742,405,0 chrXII 644551 . A G 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=141;Dels=0.00;FS=6.347;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.201;QD=23.99;ReadPosRankSum=1.707;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,137:141:99:3383,363,0 chrXII 645338 . G A 5235.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.05;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:5235,564,0 chrXII 645452 . A G 4652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=3.921;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.470;QD=25.15;ReadPosRankSum=1.713;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4652,481,0 chrXII 645648 . G T 4958.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.07;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4958,526,0 chrXII 646684 . C T 8044.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.25;SB=-3.274e+03 GT:AD:DP:GQ:PL 1/1:0,346:346:99:8044,826,0 chrXII 646705 . A G 7218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.979;DP=328;Dels=0.00;FS=2.568;HaplotypeScore=10.2196;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=1.309;QD=22.01;ReadPosRankSum=2.936;SB=-3.053e+03 GT:AD:DP:GQ:PL 1/1:3,325:328:99:7218,769,0 chrXII 646848 . C T 6856.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=21.7038;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.49;SB=-3.261e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:6856,718,0 chrXII 647017 . C T 5120.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=16.4979;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.76;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5120,520,0 chrXII 647095 . A G 5820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=15.8671;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.509;QD=22.73;ReadPosRankSum=1.691;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:1,254:256:99:5820,622,0 chrXII 647371 . T C 5301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=231;Dels=0.00;FS=2.571;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.813;QD=22.95;ReadPosRankSum=2.926;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:3,228:231:99:5301,565,0 chrXII 647512 . A G 5873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.057;DP=277;Dels=0.00;FS=14.313;HaplotypeScore=22.7623;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=1.950;QD=21.20;ReadPosRankSum=4.171;SB=-3.022e+03 GT:AD:DP:GQ:PL 1/1:6,271:277:99:5873,637,0 chrXII 647752 . T C 5304.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=9.6811;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.72;SB=-3.103e+03 GT:AD:DP:GQ:PL 1/1:0,253:256:99:5304,559,0 chrXII 647778 . G A 4716.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=18.49;SB=-3.091e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:4716,484,0 chrXII 647788 . T C 4445.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=17.50;SB=-2.881e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:4445,483,0 chrXII 647854 . C T 3929.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.71;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:3929,423,0 chrXII 647936 . G A 4875.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.21;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4875,511,0 chrXII 648649 . C T 6443.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.13;SB=-3.616e+03 GT:AD:DP:GQ:PL 1/1:0,264:267:99:6443,673,0 chrXII 648877 . T C 4307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=5.237;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.362;QD=24.20;ReadPosRankSum=1.693;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4307,456,0 chrXII 648953 . T C 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.166;DP=163;Dels=0.00;FS=8.967;HaplotypeScore=8.8420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.831;QD=23.04;ReadPosRankSum=2.471;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:4,157:163:99:3756,381,0 chrXII 649036 . G A 3003 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3036,330,0 chrXII 649258 . C T 3909.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3909,409,0 chrXII 649837 . A G 4115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=3.583;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.513;QD=25.09;ReadPosRankSum=1.711;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:4115,438,0 chrXII 650212 . T C 4454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.908;DP=208;Dels=0.00;FS=23.403;HaplotypeScore=21.4426;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.730;QD=21.41;ReadPosRankSum=4.062;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:6,200:208:99:4454,486,0 chrXII 650260 . C T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.04;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4375,448,0 chrXII 650767 . C T 1743 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.26;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1776,183,0 chrXII 656891 . G A 2225 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=25.28;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2258,240,0 chrXII 657022 . T C 1145 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=21.20;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1178,132,0 chrXII 657027 . T C 1076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;MQRankSum=0.294;QD=20.30;ReadPosRankSum=1.602;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1109,123,0 chrXII 657041 . G A 1167 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=22.02;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1200,126,0 chrXII 657049 . G A 1197 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=21.76;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1230,129,0 chrXII 657181 . A C 2399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=108;Dels=0.00;FS=2.467;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.159;QD=22.21;ReadPosRankSum=2.842;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2432,261,0 chrXII 657234 . T G 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.123;DP=84;Dels=0.00;FS=3.047;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-0.549;QD=17.24;ReadPosRankSum=2.391;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1481,162,0 chrXII 657303 . A G 1303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=114;Dels=0.00;FS=16.243;HaplotypeScore=3.2035;MLEAC=2;MLEAF=1.00;MQ=41.17;MQ0=0;MQRankSum=-0.960;QD=11.43;ReadPosRankSum=2.385;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:1336,147,0 chrXII 657321 . G A 1572 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=11.64;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:1605,168,0 chrXII 657332 . G C 1739 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=13.17;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1772,195,0 chrXII 657492 . C G 3630.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=23.57;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3630,390,0 chrXII 657536 . G T 4025.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=23.27;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4025,429,0 chrXII 657602 . G A 3023 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=25.84;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3056,321,0 chrXII 657631 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6032;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=25.55;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2920,300,0 chrXII 657792 . C G 1704 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=38.66;MQ0=0;QD=14.95;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:1737,195,0 chrXII 657805 . T C 1620 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=14.59;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1653,180,0 chrXII 657808 . C T 1420 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=107;Dels=0.00;FS=2.995;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=32.76;MQ0=0;MQRankSum=-2.357;QD=13.27;ReadPosRankSum=2.287;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:1453,111,0 chrXII 657809 . C T 1399 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.541;DP=107;Dels=0.00;FS=2.987;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=32.76;MQ0=0;MQRankSum=-2.266;QD=13.07;ReadPosRankSum=2.358;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:1432,110,0 chrXII 657814 . C T 1441 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=30.61;MQ0=0;QD=12.53;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1474,153,0 chrXII 657820 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=12.24;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1428,153,0 chrXII 657825 . T C 1304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.9191;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.693;QD=11.85;ReadPosRankSum=1.638;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:1337,144,0 chrXII 657860 . G A 1179 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.34;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1212,126,0 chrXII 657866 . A G 1055 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.55;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1088,117,0 chrXII 657899 . A G 1118 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.17;MQ0=0;QD=10.85;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1151,123,0 chrXII 657914 . T C 1276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.35;MQ0=0;MQRankSum=-1.330;QD=11.39;ReadPosRankSum=1.701;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1309,141,0 chrXII 657918 . A T 1266 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=75.5563;MLEAC=2;MLEAF=1.00;MQ=37.42;MQ0=0;QD=11.41;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1299,141,0 chrXII 658054 . A T 4313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=178;Dels=0.00;FS=4.651;HaplotypeScore=19.9952;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=0.778;QD=24.23;ReadPosRankSum=1.674;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4313,445,0 chrXII 658599 . G T 4204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.7924;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.666;QD=24.73;ReadPosRankSum=-1.630;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4204,420,0 chrXII 659350 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2582,273,0 chrXII 659769 . C T 2545 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.93;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2578,267,0 chrXII 659916 . T C 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.695;QD=24.30;ReadPosRankSum=1.707;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3353,351,0 chrXII 659919 . G A 3215 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.64;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3248,342,0 chrXII 660046 . T C 3221.92 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.98;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3255,348,0 chrXII 660371 . C T 2719 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.85;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2752,297,0 chrXII 660472 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.2904;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.35;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3553,369,0 chrXII 660622 . A T 3002 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.66;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3035,315,0 chrXII 660916 . A G 3471.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3471,369,0 chrXII 661444 . G A 3478.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.58;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3478,378,0 chrXII 661750 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.0581;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3050,315,0 chrXII 661864 . T C 4257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=183;Dels=0.00;FS=2.965;HaplotypeScore=9.5130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.020;QD=23.26;ReadPosRankSum=2.409;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4257,459,0 chrXII 661927 . A G 4050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=170;Dels=0.00;FS=3.036;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.894;QD=23.82;ReadPosRankSum=2.406;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:4050,424,0 chrXII 662311 . T C 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.177;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.0865;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.422;QD=21.04;ReadPosRankSum=0.155;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:3345,328,0 chrXII 662318 . G T 3447.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2405;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.77;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3447,360,0 chrXII 662353 . G A 3691.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.6518;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=19.95;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3691,388,0 chrXII 662494 . C G 4372.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.13;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4372,466,0 chrXII 662515 . G A 4754.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=24.38;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4754,481,0 chrXII 662627 . T C 4615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=3.390;HaplotypeScore=7.9077;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.281;QD=25.78;ReadPosRankSum=1.713;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4615,487,0 chrXII 662864 . A T 2939 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.6776;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.93;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2972,318,0 chrXII 662978 . G A 2619 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.25;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2652,285,0 chrXII 663017 . T C 2487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=104;Dels=0.00;FS=3.751;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.630;QD=23.91;ReadPosRankSum=1.664;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2520,264,0 chrXII 663332 . G A 5524.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.56;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,205:208:99:5524,577,0 chrXII 663368 . A G 4589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=6.532;HaplotypeScore=12.8084;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.462;QD=25.49;ReadPosRankSum=1.674;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4589,495,0 chrXII 663890 . T C 4648.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=19.3163;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.57;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4648,493,0 chrXII 664139 . C T 4176.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.78;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4176,450,0 chrXII 664157 . A G 4282.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.41;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4282,456,0 chrXII 664658 . G A 4353.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=25.02;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4353,454,0 chrXII 664759 . C T 5052.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=16.1452;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5052,535,0 chrXII 665236 . T G 4545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=188;Dels=0.00;FS=2.734;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.012;QD=24.18;ReadPosRankSum=2.345;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4545,481,0 chrXII 665343 . G T 3374.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.73;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3374,366,0 chrXII 665345 . T C 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=3.445;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=0.206;QD=20.16;ReadPosRankSum=1.629;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3407,372,0 chrXII 665366 . T C 3275.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=19.73;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3275,345,0 chrXII 665413 . A G 3863.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.66;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3863,417,0 chrXII 665751 . C G 5818.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=25.41;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5818,616,0 chrXII 665780 . G T 6375.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=17.4334;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=24.90;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:6375,687,0 chrXII 666395 . T C 5461.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.17;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5461,577,0 chrXII 666935 . A G 4456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=3.076;HaplotypeScore=13.5282;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.523;QD=22.39;ReadPosRankSum=1.697;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4456,489,0 chrXII 667631 . T A 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.048;QD=23.28;ReadPosRankSum=1.670;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3887,397,0 chrXII 667773 . C T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3791,382,0 chrXII 667877 . T C 2789 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.31;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2822,297,0 chrXII 668207 . G C 2347 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=25.79;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2380,252,0 chrXII 668241 . G A 2290 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.90;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2323,237,0 chrXII 668244 . C T 2316 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=23.63;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2349,237,0 chrXII 668550 . G A 3963.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.77;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3963,412,0 chrXII 668899 . C T 4476.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.0418;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=24.46;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4476,463,0 chrXII 669013 . T C 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=3.382;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=1.136;QD=23.63;ReadPosRankSum=1.704;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2940,318,0 chrXII 669043 . C T 3011 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=23.71;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3044,307,0 chrXII 669053 . G A 2863 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=22.02;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2896,303,0 chrXII 669236 . C A 2897 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=6.5150;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.78;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2930,324,0 chrXII 669290 . T A 2476 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=22.51;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2509,267,0 chrXII 669293 . G C 2332 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=21.59;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2365,258,0 chrXII 669897 . C A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=19.93;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3467,358,0 chrXII 669920 . G T 3316.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.7532;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.60;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3316,342,0 chrXII 669990 . T A 4078.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=184;Dels=0.00;FS=2.790;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=0.768;QD=22.16;ReadPosRankSum=2.423;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4078,424,0 chrXII 669994 . G A 3989.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=21.56;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3989,409,0 chrXII 670009 . T A 3728.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=20.37;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3728,402,0 chrXII 670061 . C G 4312.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.9709;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=20.34;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4312,471,0 chrXII 670291 . T A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=22.37;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3355,351,0 chrXII 670299 . T G 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.593;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.453;QD=20.98;ReadPosRankSum=1.430;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3201,318,0 chrXII 670460 . C G 2051 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.13;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2084,219,0 chrXII 670864 . A G 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.843;QD=24.51;ReadPosRankSum=1.701;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2803,297,0 chrXII 670933 . G A 2172 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2205,231,0 chrXII 670999 . C T 1771 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.30;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1804,183,0 chrXII 671032 . T C 1619 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.80;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1652,177,0 chrXII 671167 . A G 2737 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.34;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2770,294,0 chrXII 671257 . T C 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.708;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.061;QD=23.21;ReadPosRankSum=2.809;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:3,97:101:99:2377,255,0 chrXII 671310 . A G 2678 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.89;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2711,285,0 chrXII 671323 . G C 2556 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.30;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2589,282,0 chrXII 671376 . T G 2851 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.1163;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.10;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2884,315,0 chrXII 671463 . T C 3966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=-0.358;QD=22.03;ReadPosRankSum=1.693;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3966,415,0 chrXII 671465 . G A 4079.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.41;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4079,418,0 chrXII 671555 . C T 3287.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.2450;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=19.34;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3287,340,0 chrXII 671563 . T C 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=184;Dels=0.00;FS=5.051;HaplotypeScore=10.6666;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.090;QD=19.28;ReadPosRankSum=3.336;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:4,180:184:99:3548,378,0 chrXII 671669 . G A 4911.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=24.56;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4911,514,0 chrXII 671703 . A G 4961.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.3017;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=24.20;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4961,517,0 chrXII 671821 . T C 4447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=185;Dels=0.00;FS=12.225;HaplotypeScore=10.2086;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-1.516;QD=24.04;ReadPosRankSum=2.930;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:4447,477,0 chrXII 671956 . A C 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=177;Dels=0.00;FS=6.201;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.726;QD=22.63;ReadPosRankSum=2.421;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:2,169:177:99:4006,441,0 chrXII 672242 . G A 4557.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=24.24;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4557,463,0 chrXII 672265 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.964;QD=22.47;ReadPosRankSum=1.712;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3978,426,0 chrXII 672293 . A G 3993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.2502;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-1.422;QD=21.70;ReadPosRankSum=2.343;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3993,429,0 chrXII 672317 . T C 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=4.926;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-1.145;QD=21.62;ReadPosRankSum=1.671;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3718,405,0 chrXII 672355 . G C 3522.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.22;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3522,387,0 chrXII 672394 . C T 3719.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=15.9324;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.68;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3719,390,0 chrXII 672505 . G C 2371 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.25;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2404,261,0 chrXII 672556 . T G 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=120;Dels=0.00;FS=3.085;HaplotypeScore=13.2781;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-0.147;QD=21.77;ReadPosRankSum=1.703;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2645,285,0 chrXII 672637 . T C 3006 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.05;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3039,327,0 chrXII 672683 . T G 2670 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.8290;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.22;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2703,297,0 chrXII 672778 . C A 2719 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.64;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2752,291,0 chrXII 673080 . T C 3488.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=23.73;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3488,372,0 chrXII 673090 . T C 2886 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=22.37;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2919,309,0 chrXII 673111 . A G 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=111;Dels=0.00;FS=7.901;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;MQRankSum=-0.100;QD=22.45;ReadPosRankSum=2.405;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2525,270,0 chrXII 673274 . T C 2540 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.1375;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=21.53;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2573,276,0 chrXII 673337 . G A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.038;DP=102;Dels=0.00;FS=1.401;HaplotypeScore=89.8933;MLEAC=2;MLEAF=1.00;MQ=36.74;MQ0=0;MQRankSum=-3.754;QD=0.17;ReadPosRankSum=4.898;SB=-7.068e+02 GT:AD:DP:GQ:PL 1/1:11,91:102:6:48,6,0 chrXII 673346 . A G 930 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=86;Dels=0.00;FS=2.614;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.98;MQ0=0;MQRankSum=-2.421;QD=10.81;ReadPosRankSum=2.393;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:963,102,0 chrXII 673354 . C G 730 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=9.24;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:84:763,84,0 chrXII 673355 . T A 756 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;MQRankSum=-0.693;QD=9.45;ReadPosRankSum=1.689;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:84:789,84,0 chrXII 673369 . G A 848 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=69.0986;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=0;QD=10.10;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:96:881,96,0 chrXII 673436 . T C 1326 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=17.92;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1359,144,0 chrXII 673533 . A G 1479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=3.947;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;MQRankSum=1.215;QD=22.07;ReadPosRankSum=1.681;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1512,159,0 chrXII 673539 . G A 1432 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=21.37;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1465,150,0 chrXII 673886 . G A 1743 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.79;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1776,189,0 chrXII 674079 . A C 2050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=101;Dels=0.01;FS=2.790;HaplotypeScore=91.8528;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.529;QD=20.30;ReadPosRankSum=2.228;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2083,225,0 chrXII 674152 . A G 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=3.826;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=0.078;QD=21.44;ReadPosRankSum=1.701;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2413,264,0 chrXII 674199 . A G 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.417;QD=21.73;ReadPosRankSum=1.627;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2923,315,0 chrXII 674615 . G A 1749 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.86;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1782,186,0 chrXII 674647 . G A 1454 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.19;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1487,156,0 chrXII 674711 . T C 2542 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.11;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2575,279,0 chrXII 674763 . T A 2037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.369;DP=105;Dels=0.00;FS=3.877;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.204;QD=19.40;ReadPosRankSum=1.600;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2070,222,0 chrXII 674781 . T C 1688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.397;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.540;QD=17.96;ReadPosRankSum=1.658;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1721,186,0 chrXII 674877 . A G 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=4.462;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.258;QD=25.28;ReadPosRankSum=1.586;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2435,258,0 chrXII 674975 . C G 2754 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4427;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.34;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2787,303,0 chrXII 675042 . G A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.89;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3659,384,0 chrXII 675394 . T A 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.319;DP=109;Dels=0.00;FS=3.132;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=1.033;QD=21.83;ReadPosRankSum=0.365;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2413,229,0 chrXII 675407 . C T 2038 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=19.79;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2071,225,0 chrXII 675865 . A T 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.729;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.235;QD=23.83;ReadPosRankSum=1.703;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2845,291,0 chrXII 675924 . T C 2608 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.61;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2641,288,0 chrXII 675925 . A G 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=133;Dels=0.00;FS=3.146;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=0.906;QD=19.81;ReadPosRankSum=1.679;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,129:133:99:2668,288,0 chrXII 675961 . C G 2903 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.59;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2936,312,0 chrXII 676076 . G C 4093.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.81;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4093,430,0 chrXII 676609 . G A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=24.07;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3683,379,0 chrXII 676612 . C G 3512.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=22.81;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3512,378,0 chrXII 676885 . G A 4408.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=23.08;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4408,463,0 chrXII 676902 . A G 4461.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=21.98;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4461,469,0 chrXII 676925 . G C 4630.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=20.49;SB=-3.140e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4630,487,0 chrXII 676937 . T C 4383.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=5.8928;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.89;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:4383,474,0 chrXII 677005 . A G 5240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.711;DP=224;Dels=0.00;FS=11.009;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.930;QD=23.39;ReadPosRankSum=3.781;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:5,216:224:99:5240,562,0 chrXII 677132 . C T 4317.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=26.98;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4317,433,0 chrXII 677164 . A G 3380.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=23.15;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3380,366,0 chrXII 677323 . A G 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=5.057;HaplotypeScore=11.7663;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.352;QD=23.96;ReadPosRankSum=1.712;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4145,441,0 chrXII 677675 . G A 6080.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=12.7203;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.33;SB=-3.284e+03 GT:AD:DP:GQ:PL 1/1:0,284:285:99:6080,655,0 chrXII 677699 . T G 5933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=264;Dels=0.00;FS=2.935;HaplotypeScore=10.4810;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.034;QD=22.47;ReadPosRankSum=2.355;SB=-3.061e+03 GT:AD:DP:GQ:PL 1/1:2,258:264:99:5933,645,0 chrXII 677829 . G A 7625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=25.8845;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.285;QD=25.00;ReadPosRankSum=-0.330;SB=-3.886e+03 GT:AD:DP:GQ:PL 1/1:1,303:305:99:7625,784,0 chrXII 677900 . T C 4713.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=15.4950;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.85;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,222:226:99:4713,502,0 chrXII 677991 . G A 4905.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.9639;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.87;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4905,514,0 chrXII 678096 . T C 3949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=175;Dels=0.00;FS=9.898;HaplotypeScore=13.4898;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=0.632;QD=22.57;ReadPosRankSum=2.655;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:3,169:175:99:3949,420,0 chrXII 678194 . C T 3940.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.7687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3940,412,0 chrXII 678367 . C G 4348.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.8297;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.02;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:4348,465,0 chrXII 678531 . C T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=16.6119;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.99;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3333,342,0 chrXII 678568 . T C 2848 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.7142;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.60;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2881,312,0 chrXII 678619 . C T 3428.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=25.21;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3428,352,0 chrXII 678645 . T C 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=8.845;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.903;QD=23.33;ReadPosRankSum=2.394;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3112,327,0 chrXII 678751 . T C 2720 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.19;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2753,285,0 chrXII 678793 . C G 2598 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.8327;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.62;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2631,279,0 chrXII 678817 . T A 2348 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.80;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2381,255,0 chrXII 679180 . G A 3903.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.7209;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.02;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3903,403,0 chrXII 679403 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.723;DP=152;Dels=0.00;FS=6.061;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.480;QD=23.84;ReadPosRankSum=2.872;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:4,146:152:99:3623,387,0 chrXII 679496 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.216;DP=182;Dels=0.00;FS=9.039;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=2.025;QD=20.34;ReadPosRankSum=3.264;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:4,175:182:99:3702,414,0 chrXII 679600 . C T 4355.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.41;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4355,468,0 chrXII 679807 . G A 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=132;Dels=0.00;FS=6.859;HaplotypeScore=7.4788;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.410;QD=21.74;ReadPosRankSum=0.780;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2903,283,0 chrXII 680005 . A C 1950 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.21;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1983,210,0 chrXII 680159 . C T 3696.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=16.0658;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.64;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3696,388,0 chrXII 680346 . T C 4660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=210;Dels=0.00;FS=3.030;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.602;QD=22.19;ReadPosRankSum=2.414;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4660,501,0 chrXII 680364 . C T 4861.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.70;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4861,499,0 chrXII 680926 . G A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.6039;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.52;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4077,424,0 chrXII 680974 . A G 3595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.1437;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.666;QD=21.15;ReadPosRankSum=1.691;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3595,393,0 chrXII 681058 . T C 4792.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.1913;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.38;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4792,496,0 chrXII 681097 . T C 4700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.393;DP=211;Dels=0.00;FS=14.036;HaplotypeScore=14.4469;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.897;QD=22.27;ReadPosRankSum=3.352;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:4,205:211:99:4700,510,0 chrXII 681563 . A G 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.165;QD=23.12;ReadPosRankSum=1.705;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2946,312,0 chrXII 681614 . G A 3712.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.3285;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.42;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3712,385,0 chrXII 681851 . A G 5181.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.4999;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.79;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:5181,556,0 chrXII 682248 . A C 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.341;QD=22.49;ReadPosRankSum=1.675;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2777,300,0 chrXII 682445 . A G 2003 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.01;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:2036,225,0 chrXII 682830 . G A 4907.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=24.41;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4907,511,0 chrXII 682839 . C A 4917.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=24.22;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4917,502,0 chrXII 682851 . C T 4549.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=22.08;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4549,469,0 chrXII 682874 . T C 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=177;Dels=0.00;FS=7.262;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-1.006;QD=21.25;ReadPosRankSum=2.422;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3761,402,0 chrXII 683405 . T C 3328.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.11;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3328,366,0 chrXII 683462 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.33;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1505,159,0 chrXII 683588 . T G 1292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=59;Dels=0.00;FS=9.700;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.670;QD=21.90;ReadPosRankSum=1.609;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:1,55:59:99:1325,144,0 chrXII 683798 . C T 2942 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.27;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2975,312,0 chrXII 683858 . T C 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.018;QD=24.71;ReadPosRankSum=1.689;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3953,432,0 chrXII 684068 . T G 5550.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.56;SB=-3.018e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:5550,589,0 chrXII 684167 . T C 4623.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.8825;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.81;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4623,501,0 chrXII 684641 . T C 3998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.161;QD=21.85;ReadPosRankSum=1.656;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3998,429,0 chrXII 684650 . T A 4246.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=22.95;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4246,427,0 chrXII 684653 . T C 3978.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=21.05;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3978,426,0 chrXII 684785 . G A 4301.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.0827;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.86;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4301,451,0 chrXII 685228 . A T 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=161;Dels=0.00;FS=10.143;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.145;QD=23.81;ReadPosRankSum=2.931;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3834,394,0 chrXII 685721 . A T 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=151;Dels=0.02;FS=3.849;HaplotypeScore=45.3357;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.772;QD=20.36;ReadPosRankSum=1.638;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3108,321,0 chrXII 685853 . T C 4633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.237;QD=22.60;ReadPosRankSum=1.613;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:4633,493,0 chrXII 686000 . C T 4806.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.3194;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.52;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4806,502,0 chrXII 686213 . G A 4827.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.56;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4827,502,0 chrXII 686636 . C T 4123.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.0209;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.43;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4123,424,0 chrXII 686752 . T A 3997.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.9483;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=24.67;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3997,418,0 chrXII 686785 . G A 3664.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7406;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.94;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3664,376,0 chrXII 686789 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=20.08;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3453,372,0 chrXII 687405 . T C 1725 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.40;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1758,186,0 chrXII 687646 . G A 728 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=20.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:81:761,81,0 chrXII 687662 . T C 929 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.908;QD=22.12;ReadPosRankSum=1.650;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,41:42:99:962,105,0 chrXII 687735 . T A 1358 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;QD=25.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1391,147,0 chrXII 687769 . G T 909 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=25.97;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:99:942,102,0 chrXII 687807 . A T 334 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.15;MQ0=0;QD=18.56;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:42:367,42,0 chrXII 687816 . G A 291 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.62;MQ0=0;QD=19.40;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:36:324,36,0 chrXII 687973 . A C 41.97 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=22.2297;MLEAC=2;MLEAF=1.00;MQ=29.33;MQ0=0;QD=1.20;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:9:74,9,0 chrXII 688077 . G A 845 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=24.85;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:93:878,93,0 chrXII 688087 . A G 890 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=23.42;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:923,99,0 chrXII 688146 . T C 1228 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.70;MQ0=0;QD=21.54;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1261,138,0 chrXII 688227 . C A 1056 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.31;MQ0=0;QD=18.21;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1089,117,0 chrXII 688237 . T G 902 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;QD=17.02;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:935,105,0 chrXII 688246 . C A 841 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.87;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:93:874,93,0 chrXII 688263 . T A 814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=63;Dels=0.00;FS=8.665;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;MQRankSum=-2.438;QD=12.92;ReadPosRankSum=3.312;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:4,59:63:90:847,90,0 chrXII 688265 . G A 750 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=11.90;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:84:783,84,0 chrXII 688326 . T C 2028 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=23.31;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2061,216,0 chrXII 688347 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=24.88;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2123,219,0 chrXII 688417 . C T 1347 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=19.81;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1380,147,0 chrXII 688424 . C G 1242 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=17.49;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1275,138,0 chrXII 688445 . C G 1540 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;QD=18.33;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1573,165,0 chrXII 688464 . G A 1725 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;QD=17.42;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1758,186,0 chrXII 688522 . C T 2316 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=22.27;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2349,249,0 chrXII 688604 . T C 2439 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=22.38;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2472,258,0 chrXII 688606 . T A 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.693;QD=23.24;ReadPosRankSum=1.701;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2589,264,0 chrXII 688733 . T C 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.4485;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.464;QD=23.68;ReadPosRankSum=1.701;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2709,291,0 chrXII 688772 . T C 2212 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.80;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2245,240,0 chrXII 688789 . C T 1985 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.35;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:2018,204,0 chrXII 688902 . G A 1397 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.54;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1430,150,0 chrXII 689122 . G T 1781 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=26.98;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1814,189,0 chrXII 689147 . G A 1465 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=25.26;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1498,153,0 chrXII 689216 . G T 2381 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=27.69;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2414,246,0 chrXII 689323 . A G 3788.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.9555;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=24.76;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3788,397,0 chrXII 689355 . T G 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=0.569;QD=20.48;ReadPosRankSum=1.683;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,139:143:99:2961,318,0 chrXII 689357 . C T 3056 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=21.22;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3089,321,0 chrXII 689502 . G C 2916 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.8855;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=21.13;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2949,309,0 chrXII 689510 . G A 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.138;DP=142;Dels=0.00;FS=4.386;HaplotypeScore=5.2519;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-0.866;QD=20.42;ReadPosRankSum=-1.311;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:2933,293,0 chrXII 689527 . A G 3307.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=22.19;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3307,354,0 chrXII 689587 . T C 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=128;Dels=0.00;FS=6.780;HaplotypeScore=9.8362;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=-0.771;QD=21.41;ReadPosRankSum=2.411;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,124:128:99:2774,300,0 chrXII 689626 . T C 2391 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.17;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2424,261,0 chrXII 689719 . G A 2248 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.18;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2281,237,0 chrXII 689793 . A G 1941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-1.222;QD=20.43;ReadPosRankSum=1.659;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1974,210,0 chrXII 689916 . C T 2272 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2305,243,0 chrXII 689955 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.07;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3240,334,0 chrXII 690162 . T C 2664 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.58;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2697,294,0 chrXII 690274 . G A 2278 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=21.49;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2311,237,0 chrXII 690280 . A G 1990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=99;Dels=0.00;FS=6.106;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=-0.598;QD=20.10;ReadPosRankSum=2.908;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:3,95:99:99:2023,216,0 chrXII 690475 . C T 3114 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=21.33;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3147,336,0 chrXII 690479 . C T 3118 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=21.36;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3151,327,0 chrXII 690497 . T C 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.251;QD=20.24;ReadPosRankSum=1.710;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3251,351,0 chrXII 690766 . C T 5225.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=25.74;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5225,550,0 chrXII 691332 . A T 2791 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2824,300,0 chrXII 691605 . A G 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=139;Dels=0.00;FS=2.771;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.469;QD=22.06;ReadPosRankSum=2.379;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3100,327,0 chrXII 691647 . T C 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=127;Dels=0.00;FS=3.226;HaplotypeScore=12.0744;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.537;QD=21.52;ReadPosRankSum=1.676;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,123:127:99:2766,297,0 chrXII 691716 . C T 3820.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3820,397,0 chrXII 691842 . A G 2678 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.91;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2711,288,0 chrXII 691866 . A G 2880 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.00;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2913,312,0 chrXII 692160 . C T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.95;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3688,387,0 chrXII 692181 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.66;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3785,402,0 chrXII 692874 . T C 3755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.175;QD=23.77;ReadPosRankSum=1.688;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3755,402,0 chrXII 693267 . C T 6335.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.04;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:6335,664,0 chrXII 693525 . T C 5042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=220;Dels=0.00;FS=7.241;HaplotypeScore=13.6390;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.084;QD=22.92;ReadPosRankSum=2.427;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:2,216:220:99:5042,538,0 chrXII 693579 . A G 4356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=183;Dels=0.00;FS=9.177;HaplotypeScore=16.4822;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.906;QD=23.80;ReadPosRankSum=2.895;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:3,178:183:99:4356,457,0 chrXII 693615 . C T 4124.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.78;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4124,441,0 chrXII 693687 . C T 3766.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.0783;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.82;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3766,388,0 chrXII 693756 . G A 2645 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.1603;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.61;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2678,285,0 chrXII 693786 . T C 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=7.782;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.460;QD=23.60;ReadPosRankSum=1.698;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2464,258,0 chrXII 693904 . A G 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.682;QD=22.58;ReadPosRankSum=2.303;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1546,162,0 chrXII 694170 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=27.80;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2618,270,0 chrXII 694211 . C T 2471 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.57;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2504,258,0 chrXII 694318 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.78;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3230,328,0 chrXII 694377 . C T 2582 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.88;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2615,276,0 chrXII 694826 . A T 1280 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=23.27;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1313,141,0 chrXII 694841 . T C 1247 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=24.45;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1280,132,0 chrXII 694915 . T C 1689 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=23.79;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1722,180,0 chrXII 694939 . A G 1905 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=23.23;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1938,210,0 chrXII 694951 . A G 1798 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=23.66;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1831,198,0 chrXII 694982 . C T 1236 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1269,132,0 chrXII 696350 . A G 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.345;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=1.283;QD=23.49;ReadPosRankSum=1.636;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2570,273,0 chrXII 696795 . A G 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=131;Dels=0.00;FS=3.027;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.880;QD=23.40;ReadPosRankSum=2.393;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:3098,333,0 chrXII 696862 . G A 2438 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=13.5348;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.44;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2471,258,0 chrXII 696990 . T C 2578 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=8.5109;MLEAC=2;MLEAF=1.00;MQ=61.02;MQ0=0;QD=22.81;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2611,276,0 chrXII 697198 . G A 2684 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.56;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2717,276,0 chrXII 697261 . A G 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.3089;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.813;QD=22.05;ReadPosRankSum=-1.544;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:1,146:150:99:3308,360,0 chrXII 697625 . A G 5086.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.10;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5086,538,0 chrXII 697759 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.265;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.4120;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.160;QD=22.84;ReadPosRankSum=1.314;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3254,342,0 chrXII 698944 . G A 4633.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=16.0821;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.17;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4633,481,0 chrXII 699067 . C T 4943.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.5771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4943,534,0 chrXII 699181 . T C 4119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=181;Dels=0.00;FS=6.092;HaplotypeScore=15.8964;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.626;QD=22.76;ReadPosRankSum=2.928;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:4119,433,0 chrXII 699566 . A G 3927.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3927,417,0 chrXII 699870 . T C 1184 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=25.19;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1217,129,0 chrXII 699895 . C T 841 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=30.9283;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=21.02;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:93:874,93,0 chrXII 700111 . G A 2576 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0810;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.42;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2609,282,0 chrXII 700524 . C A 4544.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.9536;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.83;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4544,472,0 chrXII 700890 . T A 6108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=255;Dels=0.00;FS=3.812;HaplotypeScore=22.2045;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.311;QD=23.95;ReadPosRankSum=1.664;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:6108,637,0 chrXII 701041 . G A 2511 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.28;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2544,264,0 chrXII 701265 . A G 1601 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.54;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1634,174,0 chrXII 701540 . C T 4357.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.57;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4357,445,0 chrXII 701665 . A G 3683.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.88;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3683,396,0 chrXII 701793 . A T 3695.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.30;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3695,385,0 chrXII 702075 . C T 3474.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.7224;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.32;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3474,369,0 chrXII 702204 . T C 3664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=4.210;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.517;QD=24.93;ReadPosRankSum=1.708;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3664,387,0 chrXII 702363 . G A 2934 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.66;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2967,318,0 chrXII 702384 . T C 2821 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.5789;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.12;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2854,306,0 chrXII 702585 . C G 4212.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.07;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4212,442,0 chrXII 702677 . C T 5782.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.92;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5782,595,0 chrXII 702788 . G A 6025.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.64;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:6025,637,0 chrXII 702990 . T C 3591.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.9951;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=18.90;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:3591,402,0 chrXII 703356 . C A 3985.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3985,412,0 chrXII 703572 . G A 5311.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5311,573,0 chrXII 703611 . A G 5000.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.04;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5000,549,0 chrXII 703659 . G A 4865.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.08;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4865,522,0 chrXII 703815 . C T 5595.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=20.9740;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.93;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:0,240:244:99:5595,580,0 chrXII 703971 . T C 4897.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.5618;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.78;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4897,520,0 chrXII 704386 . C G 1993 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.80;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2026,222,0 chrXII 704793 . A G 6003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=284;Dels=0.00;FS=2.997;HaplotypeScore=21.0536;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.056;QD=21.14;ReadPosRankSum=2.424;SB=-3.449e+03 GT:AD:DP:GQ:PL 1/1:2,281:284:99:6003,649,0 chrXII 704829 . G A 6014.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=18.1821;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.40;SB=-3.502e+03 GT:AD:DP:GQ:PL 1/1:0,252:257:99:6014,625,0 chrXII 704992 . T G 4363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=217;Dels=0.00;FS=4.206;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.545;QD=20.11;ReadPosRankSum=1.684;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:4363,474,0 chrXII 705029 . C T 5100.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=23.39;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:5100,523,0 chrXII 705093 . C T 4279.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=21.29;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4279,465,0 chrXII 705096 . A T 4269.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=0.210;QD=21.45;ReadPosRankSum=1.680;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4269,450,0 chrXII 705118 . T C 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=192;Dels=0.00;FS=3.029;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.068;QD=19.37;ReadPosRankSum=2.411;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:3719,393,0 chrXII 705128 . A G 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.641;DP=195;Dels=0.00;FS=16.568;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.405;QD=17.97;ReadPosRankSum=3.809;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:5,190:195:99:3505,372,0 chrXII 705191 . G A 3558.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=20.69;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3558,375,0 chrXII 705209 . G A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=19.45;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:3638,387,0 chrXII 705221 . C T 4050.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.45;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4050,412,0 chrXII 705602 . C T 4221.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.13;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4221,430,0 chrXII 705704 . A G 3539.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=24.07;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3539,369,0 chrXII 705727 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=155;Dels=0.00;FS=2.795;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.817;QD=21.54;ReadPosRankSum=2.418;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3338,363,0 chrXII 705749 . G A 3195 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.35;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3228,336,0 chrXII 706112 . T C 4075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=181;Dels=0.00;FS=8.757;HaplotypeScore=13.7843;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.389;QD=22.51;ReadPosRankSum=2.395;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4075,430,0 chrXII 706444 . A G 6272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=279;Dels=0.00;FS=10.852;HaplotypeScore=15.2355;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.279;QD=22.48;ReadPosRankSum=2.960;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:3,274:279:99:6272,670,0 chrXII 706747 . G A 3936.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;QD=20.18;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3936,412,0 chrXII 706756 . T C 3503.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=17.78;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3503,387,0 chrXII 706780 . A G 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=166;Dels=0.00;FS=5.685;HaplotypeScore=6.3626;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;MQRankSum=-0.764;QD=15.94;ReadPosRankSum=2.715;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:2679,288,0 chrXII 706789 . A G 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=167;Dels=0.00;FS=8.621;HaplotypeScore=1.9248;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;MQRankSum=-1.628;QD=16.37;ReadPosRankSum=3.407;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:4,163:167:99:2766,300,0 chrXII 706807 . G A 2624 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=17.04;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2657,270,0 chrXII 706906 . T C 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=155;Dels=0.00;FS=3.424;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.697;QD=22.95;ReadPosRankSum=1.710;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3558,384,0 chrXII 706966 . C T 3608.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=23.28;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3608,387,0 chrXII 706978 . A G 3292.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=21.95;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3292,351,0 chrXII 707020 . T C 2865 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=21.38;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2898,306,0 chrXII 707098 . T C 3196 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.33;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3229,336,0 chrXII 707238 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.73;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3262,339,0 chrXII 707302 . C T 3639.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=19.78;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3639,384,0 chrXII 707305 . T C 3539.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.66;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3539,375,0 chrXII 707318 . A G 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=3.991;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-1.124;QD=18.47;ReadPosRankSum=1.714;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3473,366,0 chrXII 707644 . A G 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.1942;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.570;QD=21.64;ReadPosRankSum=1.710;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3463,369,0 chrXII 707757 . A G 2405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=137;Dels=0.00;FS=6.246;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=0.637;QD=17.55;ReadPosRankSum=2.378;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2438,299,0 chrXII 707758 . T A 2393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;MQRankSum=0.244;QD=17.73;ReadPosRankSum=1.706;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2426,296,0 chrXII 707772 . G C 2851 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=21.12;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2884,306,0 chrXII 707950 . G A 4395.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=25.70;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4395,457,0 chrXII 708185 . G A 3552.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.33;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3552,378,0 chrXII 708261 . T C 2215 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.07;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2248,240,0 chrXII 708276 . T G 1957 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.02;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1990,210,0 chrXII 708383 . A T 2806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.3298;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.265;QD=25.05;ReadPosRankSum=1.701;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2839,297,0 chrXII 708425 . C T 2471 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=23.76;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2504,261,0 chrXII 708595 . G A 6124.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=18.4573;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=25.95;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,233:236:99:6124,628,0 chrXII 708755 . G T 5024.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.95;MQ0=0;QD=17.44;SB=-3.279e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:5024,511,0 chrXII 708796 . C T 5177.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=20.38;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5177,529,0 chrXII 708814 . A T 5020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=252;Dels=0.00;FS=5.248;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=-0.797;QD=19.92;ReadPosRankSum=2.956;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:3,249:252:99:5020,529,0 chrXII 708837 . T G 4815.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=19.42;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:4815,511,0 chrXII 708840 . G A 4877.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=19.83;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:4877,505,0 chrXII 708955 . C T 4859.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=24.67;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4859,499,0 chrXII 709063 . A T 3769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=167;Dels=0.00;FS=6.642;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=1.434;QD=22.57;ReadPosRankSum=2.420;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3769,391,0 chrXII 709102 . T A 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;MQRankSum=0.844;QD=17.91;ReadPosRankSum=2.366;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3186,325,0 chrXII 709175 . G C 2890 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=16.42;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:2923,306,0 chrXII 709384 . A G 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=0.346;QD=24.15;ReadPosRankSum=1.712;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4226,462,0 chrXII 709879 . G A 4400.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=23.53;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4400,471,0 chrXII 709888 . T C 4354.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=22.92;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4354,471,0 chrXII 710056 . T C 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=8.523;HaplotypeScore=6.0800;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=-1.646;QD=19.56;ReadPosRankSum=1.703;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2439,267,0 chrXII 710068 . C A 2695 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=22.46;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2728,279,0 chrXII 710090 . A G 2014 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=20.14;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2047,222,0 chrXII 710116 . A G 1773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=0.362;QD=19.48;ReadPosRankSum=1.694;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1806,189,0 chrXII 710157 . A G 806 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=21.21;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:839,90,0 chrXII 710161 . A G 801 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=44;Dels=0.00;FS=3.882;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;MQRankSum=0.630;QD=18.20;ReadPosRankSum=1.654;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:87:834,87,0 chrXII 710167 . G A 925 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.56;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:958,99,0 chrXII 710215 . G A 1274 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.55;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1307,141,0 chrXII 710283 . T G 1734 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.08;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1767,189,0 chrXII 710358 . T G 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.971;QD=25.21;ReadPosRankSum=2.339;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3353,354,0 chrXII 710415 . T A 3035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=0.357;QD=24.09;ReadPosRankSum=1.705;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3068,318,0 chrXII 710493 . A T 2978 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=13.0132;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.06;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3011,315,0 chrXII 710635 . C T 3805.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=24.39;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3805,399,0 chrXII 710704 . G A 3764.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=22.81;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3764,385,0 chrXII 710709 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.55;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3559,370,0 chrXII 710854 . C T 3868.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=23.88;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3868,397,0 chrXII 710871 . G A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=23.06;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3735,382,0 chrXII 710894 . C G 3556.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=20.80;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3556,381,0 chrXII 711045 . T G 3397.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=22.50;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3397,363,0 chrXII 711058 . T C 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=150;Dels=0.00;FS=6.108;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-1.483;QD=22.15;ReadPosRankSum=2.912;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:3,145:150:99:3323,354,0 chrXII 711067 . C T 3169 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=21.41;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3202,331,0 chrXII 711312 . C T 3522.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=23.48;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3522,364,0 chrXII 711337 . A G 3110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=3.122;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=0.614;QD=19.56;ReadPosRankSum=1.710;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3143,342,0 chrXII 711354 . G T 3157 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.6284;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.57;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3190,345,0 chrXII 711432 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2689,279,0 chrXII 711837 . T G 3485.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.7659;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3485,384,0 chrXII 712040 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.91;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2689,288,0 chrXII 712134 . T C 2524 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;QD=22.34;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2557,270,0 chrXII 712302 . C T 2261 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2294,240,0 chrXII 712581 . C T 1324 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.07;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1357,138,0 chrXII 712942 . T C 1226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;MQRankSum=0.499;QD=20.78;ReadPosRankSum=1.674;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1259,138,0 chrXII 712958 . C T 1113 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=19.19;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1146,117,0 chrXII 712973 . T C 989 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.33;MQ0=0;QD=16.21;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1022,108,0 chrXII 712990 . A C 725 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;QD=14.22;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:84:758,84,0 chrXII 713059 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.90;MQ0=0;QD=14.65;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1718,174,0 chrXII 713068 . T A 1694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.750;DP=125;Dels=0.00;FS=2.586;HaplotypeScore=7.4488;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;MQRankSum=-1.073;QD=13.55;ReadPosRankSum=2.041;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:1727,180,0 chrXII 713180 . G T 2966 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=24.31;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2999,312,0 chrXII 713310 . T A 69.52 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.014;DP=153;Dels=0.01;FS=1.107;HaplotypeScore=260.1468;MLEAC=1;MLEAF=0.500;MQ=48.57;MQ0=0;MQRankSum=-0.672;QD=0.45;ReadPosRankSum=-5.020;SB=-5.352e+01 GT:AD:DP:GQ:PL 0/1:139,13:152:6:99,0,6 chrXII 713420 . C G 5162.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.82;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:5162,541,0 chrXII 713479 . T C 4352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.7536;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-1.698;QD=21.23;ReadPosRankSum=1.698;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,201:205:99:4352,463,0 chrXII 713507 . A G 4084.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=229;Dels=0.00;FS=10.092;HaplotypeScore=4.2332;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;MQRankSum=-2.074;QD=17.83;ReadPosRankSum=2.385;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:4084,432,0 chrXII 713513 . G A 3914.01 SnpCluster AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=16.80;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:3914,432,0 chrXII 713516 . T C 4040.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=244;Dels=0.00;FS=2.559;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;MQRankSum=-1.354;QD=16.56;ReadPosRankSum=2.846;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:3,238:244:99:4040,435,0 chrXII 713543 . A C 4507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=264;Dels=0.00;FS=4.992;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=1.428;QD=17.07;ReadPosRankSum=1.719;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:1,261:264:99:4507,489,0 chrXII 713644 . A G 5748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=14.4404;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.061;QD=22.72;ReadPosRankSum=1.691;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:5748,613,0 chrXII 713693 . G C 6009.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=16.5309;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.01;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:0,266:273:99:6009,652,0 chrXII 713843 . T C 4429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=203;Dels=0.00;FS=3.032;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.456;QD=21.82;ReadPosRankSum=2.413;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:4429,471,0 chrXII 714002 . G A 4179.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.49;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4179,427,0 chrXII 714020 . G A 4111.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.58;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4111,418,0 chrXII 714062 . A G 4767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=229;Dels=0.00;FS=3.629;HaplotypeScore=17.1877;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.766;QD=20.82;ReadPosRankSum=1.717;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:1,225:229:99:4767,511,0 chrXII 714134 . A G 5919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.615;DP=268;Dels=0.00;FS=18.047;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.035;QD=22.09;ReadPosRankSum=3.803;SB=-3.037e+03 GT:AD:DP:GQ:PL 1/1:5,261:268:99:5919,631,0 chrXII 714158 . A G 5886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=267;Dels=0.00;FS=10.541;HaplotypeScore=7.1816;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-2.166;QD=22.04;ReadPosRankSum=2.974;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:3,263:267:99:5886,642,0 chrXII 714185 . G A 5545.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=8.7474;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=22.36;SB=-3.337e+03 GT:AD:DP:GQ:PL 1/1:0,245:248:99:5545,574,0 chrXII 714200 . C T 4470.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.6812;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=19.78;SB=-2.840e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4470,483,0 chrXII 714302 . G A 5896.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=10.4608;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.98;SB=-3.613e+03 GT:AD:DP:GQ:PL 1/1:0,279:281:99:5896,631,0 chrXII 714320 . G T 5811.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=7.1856;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.75;SB=-3.189e+03 GT:AD:DP:GQ:PL 1/1:0,278:280:99:5811,625,0 chrXII 714407 . A G 4962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.1733;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=-0.772;QD=21.48;ReadPosRankSum=1.687;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:4962,534,0 chrXII 714439 . G A 4395.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.31;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4395,457,0 chrXII 714546 . G A 5420.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.58;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5420,562,0 chrXII 714587 . C T 5400.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=9.8569;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.38;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5400,565,0 chrXII 714641 . G A 4464.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.32;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4464,483,0 chrXII 714966 . G C 3633.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.38;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3633,384,0 chrXII 714987 . A G 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=143;Dels=0.00;FS=7.883;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.851;QD=23.80;ReadPosRankSum=2.295;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3404,360,0 chrXII 715068 . G A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=18.26;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3359,346,0 chrXII 715073 . C A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.2412;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=17.32;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3361,360,0 chrXII 715235 . C T 3147 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.85;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3180,327,0 chrXII 715262 . G T 3932.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=23.40;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3932,420,0 chrXII 715304 . C T 4771.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=24.10;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4771,513,0 chrXII 715595 . A G 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=149;Dels=0.00;FS=6.471;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.998;QD=25.34;ReadPosRankSum=2.417;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3775,399,0 chrXII 715622 . A C 4193.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=24.10;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4193,447,0 chrXII 715772 . G T 4895.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=17.4317;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.97;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4895,511,0 chrXII 715867 . C T 4558.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=23.62;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4558,475,0 chrXII 715886 . G A 3844.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.36;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3844,400,0 chrXII 715889 . T C 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=180;Dels=0.00;FS=7.184;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=-0.566;QD=20.28;ReadPosRankSum=2.368;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3651,396,0 chrXII 715955 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.4242;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.31;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3964,412,0 chrXII 715982 . G A 5140.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.25;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5140,529,0 chrXII 716177 . C T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.4781;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.56;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3475,355,0 chrXII 716369 . G A 4198.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.2929;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.84;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4198,427,0 chrXII 716399 . C T 3818.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.47;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3818,402,0 chrXII 716594 . T C 4610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=197;Dels=0.00;FS=6.021;HaplotypeScore=11.8641;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.421;QD=23.40;ReadPosRankSum=2.892;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:3,193:197:99:4610,504,0 chrXII 716777 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3432,369,0 chrXII 716852 . A C 3633.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.06;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3633,393,0 chrXII 717136 . G A 671 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:72:704,72,0 chrXII 717181 . T C 1948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.138;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.295;QD=24.66;ReadPosRankSum=2.388;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1981,213,0 chrXII 717475 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.76;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2666,273,0 chrXII 717529 . C T 2882 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.28;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2915,297,0 chrXII 717712 . A G 3030 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.31;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3063,330,0 chrXII 717897 . G T 2371 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.9046;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=23.48;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2404,252,0 chrXII 717949 . G C 2093 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=19.75;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2126,225,0 chrXII 717952 . T C 2072 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.55;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2105,222,0 chrXII 718104 . G A 378 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=10.0686;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=13.03;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:42:411,42,0 chrXII 718154 . A G 519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-0.603;QD=11.28;ReadPosRankSum=1.657;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,45:46:60:552,60,0 chrXII 718211 . G A 633 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=23.44;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:69:666,69,0 chrXII 718266 . A G 536 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=14.49;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:60:569,60,0 chrXII 718278 . T A 943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.864;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;MQRankSum=0.188;QD=15.72;ReadPosRankSum=2.367;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:976,105,0 chrXII 718479 . T C 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-0.256;QD=22.39;ReadPosRankSum=1.704;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2765,294,0 chrXII 718515 . A G 2854 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.78;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2887,306,0 chrXII 718521 . T C 2797 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=18.05;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2830,297,0 chrXII 718593 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.59;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2813,291,0 chrXII 718821 . T C 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=4.582;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.629;QD=24.84;ReadPosRankSum=1.706;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3353,360,0 chrXII 718896 . G A 2422 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.88;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2455,264,0 chrXII 719036 . T C 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=121;Dels=0.00;FS=2.692;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.132;QD=23.65;ReadPosRankSum=2.287;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2895,312,0 chrXII 719106 . G A 3193 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3804;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.61;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3226,331,0 chrXII 719400 . G A 4620.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.6933;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.06;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4620,484,0 chrXII 719436 . T C 4456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=4.235;HaplotypeScore=7.6284;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.297;QD=25.32;ReadPosRankSum=1.712;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4456,477,0 chrXII 719509 . T C 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=5.286;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.296;QD=20.58;ReadPosRankSum=1.709;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3182,339,0 chrXII 719618 . A G 2243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=120;Dels=0.01;FS=3.010;HaplotypeScore=21.3578;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;MQRankSum=-0.093;QD=18.69;ReadPosRankSum=2.408;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2276,255,0 chrXII 719858 . T G 3103 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.1951;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.55;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3136,342,0 chrXII 719910 . C T 3515.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.39;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3515,364,0 chrXII 720526 . T A 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=123;Dels=0.00;FS=6.128;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-1.535;QD=20.56;ReadPosRankSum=1.676;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2562,264,0 chrXII 720539 . G A 2357 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.43;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2390,240,0 chrXII 721257 . G A 4264.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=18.2783;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.21;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4264,445,0 chrXII 721788 . C T 1563 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.99;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1596,165,0 chrXII 721983 . G A 1873 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.36;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1906,195,0 chrXII 721984 . G A 1871 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.56;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1904,195,0 chrXII 722023 . A G 2668 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=19.62;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2701,297,0 chrXII 722079 . A T 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=169;Dels=0.00;FS=3.088;HaplotypeScore=7.4146;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.199;QD=23.98;ReadPosRankSum=-1.035;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4052,403,0 chrXII 722344 . C G 4703.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=15.0337;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.62;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4703,493,0 chrXII 722380 . T C 4508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=3.034;HaplotypeScore=10.4230;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.297;QD=24.50;ReadPosRankSum=1.694;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:1,180:184:99:4508,478,0 chrXII 722447 . T C 3144 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.0387;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=19.53;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3177,339,0 chrXII 722471 . T A 2308 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=15.39;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2341,249,0 chrXII 722507 . G A 2421 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=15.42;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2454,255,0 chrXII 722593 . T C 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=3.287;HaplotypeScore=6.7450;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.128;QD=22.07;ReadPosRankSum=1.689;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3597,378,0 chrXII 722617 . A G 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=155;Dels=0.00;FS=3.024;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=0.249;QD=22.20;ReadPosRankSum=2.401;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:2,151:155:99:3441,369,0 chrXII 722657 . G T 2457 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.54;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2490,264,0 chrXII 722745 . C G 2713 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.87;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2746,297,0 chrXII 722850 . G A 1958 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=16.05;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:1991,210,0 chrXII 723178 . A T 60.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.869;DP=124;Dels=0.00;FS=8.892;HaplotypeScore=399.3564;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=-0.942;QD=0.49;ReadPosRankSum=-4.439;SB=-3.512e+00 GT:AD:DP:GQ:PL 1/1:117,7:124:12:93,12,0 chrXII 723182 . A T 98.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=126;Dels=0.00;FS=8.069;HaplotypeScore=110.5652;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-0.212;QD=0.78;ReadPosRankSum=0.750;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:5,121:126:18:131,18,0 chrXII 723252 . G A 2065 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.9244;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=17.96;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2098,213,0 chrXII 723283 . G C 2253 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=16.45;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2286,243,0 chrXII 723290 . A G 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=3.845;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;MQRankSum=-0.618;QD=16.40;ReadPosRankSum=1.708;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2378,252,0 chrXII 723319 . T G 2313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=34.83;MQ0=0;MQRankSum=1.048;QD=13.69;ReadPosRankSum=1.691;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:2346,249,0 chrXII 723329 . A G 1937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=4.133;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=31.54;MQ0=0;MQRankSum=-1.557;QD=12.26;ReadPosRankSum=1.710;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:1970,213,0 chrXII 723330 . A G 1966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=4.177;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;MQRankSum=-1.732;QD=12.52;ReadPosRankSum=1.710;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:1999,213,0 chrXII 723342 . C T 2044 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=31.69;MQ0=0;QD=12.62;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2077,216,0 chrXII 723355 . T C 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.7804;MLEAC=2;MLEAF=1.00;MQ=39.24;MQ0=0;MQRankSum=-1.501;QD=13.76;ReadPosRankSum=1.713;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:2510,270,0 chrXII 723463 . T C 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=171;Dels=0.00;FS=7.428;HaplotypeScore=8.1763;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=1.286;QD=19.83;ReadPosRankSum=2.406;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3391,357,0 chrXII 723739 . T C 1628 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.93;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1661,174,0 chrXII 723998 . C A 2389 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2422,258,0 chrXII 724534 . A G 1739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.394;QD=19.76;ReadPosRankSum=1.693;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1772,189,0 chrXII 724833 . C T 1765 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.22;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1798,186,0 chrXII 724901 . C T 2936 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2969,306,0 chrXII 725538 . C T 2184 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.6549;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=12.55;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2217,228,0 chrXII 725542 . A G 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;MQRankSum=-0.362;QD=12.45;ReadPosRankSum=2.421;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:2,171:174:99:2199,234,0 chrXII 725578 . T C 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.871;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;MQRankSum=0.488;QD=15.24;ReadPosRankSum=1.388;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,180:182:99:2807,287,0 chrXII 725584 . G C 3081 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=16.30;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3114,336,0 chrXII 725693 . A T 2047 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=22.01;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2080,216,0 chrXII 725936 . G A 2688 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.79;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2721,282,0 chrXII 726025 . A G 3485.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3485,378,0 chrXII 726064 . C A 3477.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.49;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3477,358,0 chrXII 726161 . C G 3727.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.45;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3727,405,0 chrXII 726449 . G A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.13;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3496,375,0 chrXII 726580 . A G 4105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=172;Dels=0.00;FS=6.910;HaplotypeScore=11.2486;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-2.016;QD=23.87;ReadPosRankSum=2.421;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:2,168:172:99:4105,441,0 chrXII 726848 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=180;Dels=0.00;FS=5.859;HaplotypeScore=17.3969;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.260;QD=22.52;ReadPosRankSum=2.904;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:3,175:180:99:4054,441,0 chrXII 727094 . G A 4200.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.11;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4200,450,0 chrXII 727106 . T C 4334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=202;Dels=0.00;FS=2.954;HaplotypeScore=9.0760;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=1.484;QD=21.46;ReadPosRankSum=2.364;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4334,468,0 chrXII 727328 . A G 3801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.656;DP=170;Dels=0.00;FS=4.863;HaplotypeScore=16.9454;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.227;QD=22.36;ReadPosRankSum=3.798;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:5,163:170:99:3801,405,0 chrXII 727454 . C T 1625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.713;DP=75;Dels=0.00;FS=8.235;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=2.068;QD=21.67;ReadPosRankSum=1.542;SB=-7.579e+02 GT:AD:DP:GQ:PL 1/1:4,70:75:99:1658,130,0 chrXII 727539 . T C 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.230;DP=139;Dels=0.00;FS=9.134;HaplotypeScore=13.6789;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.529;QD=21.49;ReadPosRankSum=3.395;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:4,134:139:99:3020,318,0 chrXII 727901 . T C 5853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=247;Dels=0.00;FS=9.630;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.514;QD=23.70;ReadPosRankSum=2.947;SB=-3.168e+03 GT:AD:DP:GQ:PL 1/1:3,243:247:99:5853,625,0 chrXII 727931 . G A 4710.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.86;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4710,507,0 chrXII 728027 . A G 4138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.190;QD=22.99;ReadPosRankSum=1.693;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4138,438,0 chrXII 728082 . G A 3799.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.35;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3799,397,0 chrXII 728249 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=24.92;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2974,306,0 chrXII 728635 . G A 4952.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.8634;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4952,520,0 chrXII 728727 . C G 2278 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=19.81;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2311,249,0 chrXII 729242 . T C 5031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=232;Dels=0.00;FS=7.172;HaplotypeScore=18.2282;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.147;QD=21.69;ReadPosRankSum=2.418;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:2,228:232:99:5031,532,0 chrXII 729938 . C T 6769.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.89;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:6769,700,0 chrXII 729962 . T C 5743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=265;Dels=0.00;FS=2.707;HaplotypeScore=9.2003;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-0.968;QD=21.67;ReadPosRankSum=1.977;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:2,263:265:99:5743,603,0 chrXII 730538 . G A 2162 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2195,228,0 chrXII 730685 . C T 2383 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2416,249,0 chrXII 730719 . C A 2296 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2329,240,0 chrXII 730778 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.20;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3432,352,0 chrXII 731012 . C T 5800.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.36;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5800,589,0 chrXII 731668 . T A 627 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.92;MQ0=0;QD=18.44;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:84:660,84,0 chrXII 731669 . G A 625 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.72;MQ0=0;QD=18.94;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:84:658,84,0 chrXII 731671 . A T 622 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.33;MQ0=0;QD=19.44;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:84:655,84,0 chrXII 731677 . G C 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.937;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.47;MQ0=0;MQRankSum=1.300;QD=5.00;ReadPosRankSum=-0.550;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,3:8:9:72,9,0 chrXII 732004 . A C 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.984;DP=57;Dels=0.02;FS=23.649;HaplotypeScore=30.6024;MLEAC=1;MLEAF=0.500;MQ=34.75;MQ0=0;MQRankSum=-0.742;QD=0.28;ReadPosRankSum=2.011;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,6:56:46:46,0,200 chrXII 732435 . G A 3982.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=23.7989;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.15;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3982,409,0 chrXII 733837 . G A 4193.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=17.1321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4193,430,0 chrXII 734157 . A T 3820.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.58;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3820,405,0 chrXII 734456 . C T 2231 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=24.79;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2264,234,0 chrXII 736127 . A G 4730.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.9781;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.21;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4730,502,0 chrXII 736154 . G A 4845.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.18;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4845,505,0 chrXII 736352 . A G 4921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=211;Dels=0.00;FS=3.777;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.221;QD=23.32;ReadPosRankSum=1.633;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:4921,540,0 chrXII 736586 . G A 5242.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=24.1656;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.21;SB=-3.187e+03 GT:AD:DP:GQ:PL 1/1:0,231:236:99:5242,541,0 chrXII 736739 . G A 5654.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.0133;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.76;SB=-3.080e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5654,586,0 chrXII 736757 . G A 4987.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.68;SB=-3.072e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:4987,517,0 chrXII 737504 . A G 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.116;QD=23.05;ReadPosRankSum=2.366;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2730,285,0 chrXII 737570 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=20.93;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2189,225,0 chrXII 738097 . G C 4006.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.8402;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.28;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4006,424,0 chrXII 738125 . T C 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=166;Dels=0.00;FS=6.097;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=0.525;QD=23.04;ReadPosRankSum=2.895;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:3,160:166:99:3824,408,0 chrXII 738353 . A G 6447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=271;Dels=0.00;FS=13.979;HaplotypeScore=12.1958;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.379;QD=23.79;ReadPosRankSum=2.944;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:3,267:271:99:6447,688,0 chrXII 738992 . C T 4102.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.7171;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.82;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:4102,421,0 chrXII 739051 . T C 4070.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.08;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4070,424,0 chrXII 739067 . A G 3913.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.5441;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.74;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3913,420,0 chrXII 739184 . C T 4165.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.2944;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.27;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4165,444,0 chrXII 739411 . A G 4652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=205;Dels=0.00;FS=2.925;HaplotypeScore=19.9952;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.006;QD=22.69;ReadPosRankSum=2.341;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4652,501,0 chrXII 739624 . T C 4603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.356;QD=25.02;ReadPosRankSum=1.694;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4603,484,0 chrXII 739958 . G A 5461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=226;Dels=0.00;FS=3.148;HaplotypeScore=11.7979;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.346;QD=24.16;ReadPosRankSum=0.131;SB=-2.875e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:5461,530,0 chrXII 740405 . G A 4886.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.93;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4886,505,0 chrXII 740813 . A G 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=147;Dels=0.00;FS=3.293;HaplotypeScore=12.0510;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.521;QD=22.60;ReadPosRankSum=1.708;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:1,142:147:99:3322,354,0 chrXII 741116 . C T 4528.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.6629;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.87;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4528,463,0 chrXII 741197 . T C 4287.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.8960;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.68;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4287,468,0 chrXII 741422 . G A 5069.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5069,526,0 chrXII 741983 . G A 3963.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.2175;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.39;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3963,409,0 chrXII 742073 . T G 3328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.180;QD=21.33;ReadPosRankSum=1.327;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3328,354,0 chrXII 742088 . T C 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.727;QD=21.31;ReadPosRankSum=2.399;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3165,336,0 chrXII 742174 . C T 4778.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.1140;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=23.65;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4778,496,0 chrXII 742199 . A G 4387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=230;Dels=0.00;FS=4.389;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.501;QD=19.07;ReadPosRankSum=1.702;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:4387,480,0 chrXII 742202 . T C 4461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=231;Dels=0.00;FS=2.567;HaplotypeScore=3.5726;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-0.961;QD=19.31;ReadPosRankSum=2.961;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:4,227:231:99:4461,469,0 chrXII 742352 . G A 5721.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.9189;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=26.36;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5721,586,0 chrXII 742787 . T C 3278.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3278,345,0 chrXII 742979 . A G 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=4.106;HaplotypeScore=8.7565;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.011;QD=25.38;ReadPosRankSum=1.710;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3985,426,0 chrXII 743013 . T A 4091.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.95;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4091,438,0 chrXII 743135 . A G 3764.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=24.28;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3764,397,0 chrXII 743183 . G A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=21.79;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3399,349,0 chrXII 743189 . C T 3162 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.67;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3195,325,0 chrXII 743204 . A G 2845 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=19.49;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2878,309,0 chrXII 743763 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.0595;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.92;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3659,379,0 chrXII 743917 . A T 2604 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;QD=20.83;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2637,270,0 chrXII 744124 . T C 1961 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.28;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1994,216,0 chrXII 744207 . G A 2864 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.67;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2897,300,0 chrXII 744416 . A G 2819 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.89;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2852,312,0 chrXII 744446 . T C 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=9.259;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.213;QD=21.28;ReadPosRankSum=2.409;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2608,279,0 chrXII 744566 . A T 3937.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.86;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3937,403,0 chrXII 744885 . T A 932 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.83;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:965,102,0 chrXII 744923 . C A 1261 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=26.27;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1294,132,0 chrXII 745020 . G C 1397 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1430,150,0 chrXII 745460 . A G 2046 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.9134;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.77;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2079,225,0 chrXII 745464 . G A 2063 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=23.18;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2096,216,0 chrXII 745552 . G A 2906 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.02;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2939,300,0 chrXII 745609 . C G 2442 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=108.6095;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.52;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2475,261,0 chrXII 745660 . C G 2421 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=17.29;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2454,261,0 chrXII 745671 . A G 2556 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=18.00;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2589,273,0 chrXII 745706 . C T 3142 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=21.23;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3175,330,0 chrXII 746036 . G A 4033.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.58;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4033,412,0 chrXII 747358 . C T 2968 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=23.74;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3001,318,0 chrXII 747374 . T C 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=133;Dels=0.00;FS=2.715;HaplotypeScore=12.1258;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=1.729;QD=22.68;ReadPosRankSum=2.061;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3050,324,0 chrXII 747505 . T C 3123 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.15;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3156,339,0 chrXII 747529 . G T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.37;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3288,337,0 chrXII 747808 . G A 2610 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=21.39;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2643,282,0 chrXII 747813 . A G 2634 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=94.3102;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=1.063;QD=22.13;ReadPosRankSum=1.703;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2667,288,0 chrXII 747817 . T C 2627 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=98.5185;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=22.65;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2660,276,0 chrXII 747877 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.02;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2934,312,0 chrXII 747900 . A C 3301.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.30;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3301,354,0 chrXII 747929 . A G 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=145;Dels=0.00;FS=6.234;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=1.416;QD=20.64;ReadPosRankSum=2.365;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3026,327,0 chrXII 748236 . G A 6706.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=14.3970;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.09;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:6706,697,0 chrXII 748299 . C T 5186.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.4638;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.23;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5186,538,0 chrXII 748362 . T C 5048.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.2511;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.74;SB=-2.864e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5048,538,0 chrXII 748416 . A T 6917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=298;Dels=0.00;FS=2.894;HaplotypeScore=5.9222;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.235;QD=23.21;ReadPosRankSum=2.425;SB=-3.267e+03 GT:AD:DP:GQ:PL 1/1:2,296:298:99:6917,745,0 chrXII 748497 . T A 5446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=239;Dels=0.00;FS=3.370;HaplotypeScore=16.7191;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.080;QD=22.79;ReadPosRankSum=1.631;SB=-2.809e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5446,577,0 chrXII 748572 . A G 5136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.8165;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.089;QD=23.89;ReadPosRankSum=1.700;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:5136,547,0 chrXII 748731 . A G 2996 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.55;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3029,324,0 chrXII 748735 . A T 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.316;QD=23.42;ReadPosRankSum=1.682;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3242,330,0 chrXII 749136 . A G 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=3.869;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.288;QD=25.54;ReadPosRankSum=1.688;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:2025,213,0 chrXII 749273 . T C 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.412;QD=24.69;ReadPosRankSum=1.633;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2625,279,0 chrXII 749302 . C A 2818 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.72;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2851,294,0 chrXII 749546 . T G 3394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=20.6380;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.247;QD=21.35;ReadPosRankSum=1.710;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3394,378,0 chrXII 749673 . G C 4772.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.6452;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4772,519,0 chrXII 749793 . A G 4787.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.24;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4787,502,0 chrXII 749934 . A G 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.248;QD=20.54;ReadPosRankSum=1.681;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2826,306,0 chrXII 750324 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.81;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3762,402,0 chrXII 750485 . G A 4156.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.59;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4156,424,0 chrXII 750621 . C T 2804 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.91;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2837,294,0 chrXII 750669 . T C 3051 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.95;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3084,336,0 chrXII 750835 . G C 3178 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.9581;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.07;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,140:144:99:3211,345,0 chrXII 750942 . C T 2568 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.22;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2601,270,0 chrXII 750944 . C T 2619 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.82;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2652,267,0 chrXII 750988 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.44;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3163,327,0 chrXII 751142 . G A 2081 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.60;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2114,216,0 chrXII 751398 . C T 1825 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1858,195,0 chrXII 751824 . C T 2063 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.18;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2096,210,0 chrXII 751827 . A G 2026 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.33;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2059,219,0 chrXII 751890 . G A 2112 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2145,222,0 chrXII 752103 . C A 888 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=26.91;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:93:921,93,0 chrXII 752118 . G A 890 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.72;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:93:923,93,0 chrXII 752258 . C T 1727 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.72;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1760,183,0 chrXII 752259 . C T 1745 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.96;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1778,183,0 chrXII 752431 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.89;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2756,282,0 chrXII 752593 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.1809;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.939;QD=24.31;ReadPosRankSum=1.711;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:4060,438,0 chrXII 753079 . G A 4583.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.77;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4583,475,0 chrXII 753525 . T C 3118 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3151,345,0 chrXII 753571 . C T 3043 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3076,324,0 chrXII 754314 . A G 1909 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.00;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1942,204,0 chrXII 754377 . G A 1902 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.61;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1935,201,0 chrXII 754389 . G A 2024 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.6699;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.08;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2057,216,0 chrXII 754651 . G A 4888.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.8161;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=25.33;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4888,508,0 chrXII 754945 . T C 3118 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.98;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3151,336,0 chrXII 754978 . A G 3378.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.02;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3378,354,0 chrXII 755191 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.30;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4054,438,0 chrXII 755256 . T C 3984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=175;Dels=0.00;FS=3.321;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.254;QD=22.77;ReadPosRankSum=1.652;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3984,426,0 chrXII 755553 . C T 3482.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3482,358,0 chrXII 755782 . G C 3461.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3461,372,0 chrXII 755890 . C T 3895.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.8850;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=24.65;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3895,403,0 chrXII 755941 . A G 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=3.905;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-1.206;QD=23.61;ReadPosRankSum=1.613;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3424,369,0 chrXII 755968 . C T 3772.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.3808;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=26.01;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3772,382,0 chrXII 756137 . C T 4095.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.1154;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.62;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4095,424,0 chrXII 756158 . T C 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=160;Dels=0.00;FS=3.830;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.872;QD=19.66;ReadPosRankSum=1.688;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,156:160:99:3179,333,0 chrXII 756805 . T A 5057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.332;QD=25.54;ReadPosRankSum=1.645;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:5057,526,0 chrXII 757020 . C T 3548.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=17.0632;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.46;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3548,364,0 chrXII 757068 . T C 3080 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.32;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3113,327,0 chrXII 757090 . A G 3132 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=23.03;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3165,333,0 chrXII 757131 . A G 2946 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=23.57;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2979,315,0 chrXII 757367 . A G 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=111;Dels=0.00;FS=5.504;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;MQRankSum=-0.482;QD=18.60;ReadPosRankSum=2.919;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2098,225,0 chrXII 757387 . C G 112.34 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=174.5226;MLEAC=1;MLEAF=0.500;MQ=38.44;MQ0=0;MQRankSum=1.170;QD=1.09;ReadPosRankSum=2.931;SB=-1.098e+03 GT:AD:DP:GQ:PL 0/1:3,98:103:8:142,0,8 chrXII 757576 . C A 1386 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=51.1262;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=18.73;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1419,147,0 chrXII 757763 . C T 2790 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3148;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.47;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2823,288,0 chrXII 757817 . C G 2757 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=24.62;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2790,294,0 chrXII 758082 . G A 3495.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.98;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3495,372,0 chrXII 758099 . T C 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.0461;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.683;QD=22.09;ReadPosRankSum=2.342;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3534,381,0 chrXII 758246 . A G 4101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=190;Dels=0.00;FS=3.176;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.658;QD=21.58;ReadPosRankSum=1.714;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:1,186:190:99:4101,450,0 chrXII 758414 . A C 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=3.220;HaplotypeScore=3.9967;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=0.143;QD=20.09;ReadPosRankSum=1.691;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,169:174:99:3496,384,0 chrXII 758417 . T C 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=165;Dels=0.00;FS=2.990;HaplotypeScore=4.4169;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;MQRankSum=0.201;QD=20.19;ReadPosRankSum=2.420;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3331,354,0 chrXII 758451 . A C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=196;Dels=0.00;FS=6.060;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;MQRankSum=-0.139;QD=16.99;ReadPosRankSum=2.923;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:3,192:196:99:3330,363,0 chrXII 758455 . T A 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=200;Dels=0.00;FS=3.098;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=-0.294;QD=17.79;ReadPosRankSum=1.715;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:3557,370,0 chrXII 758492 . C G 4773.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=19.64;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,238:243:99:4773,505,0 chrXII 758524 . C T 5620.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=18.5191;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.51;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:5620,601,0 chrXII 758595 . G A 4675.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.10;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4675,475,0 chrXII 758853 . C T 3769.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3769,388,0 chrXII 758959 . A G 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.238;DP=167;Dels=0.00;FS=2.419;HaplotypeScore=17.3043;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.205;QD=21.31;ReadPosRankSum=3.407;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:4,162:167:99:3559,381,0 chrXII 759015 . A G 3146 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.39;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3179,336,0 chrXII 759162 . A G 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=95;Dels=0.00;FS=3.499;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.142;QD=22.69;ReadPosRankSum=1.695;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2189,243,0 chrXII 759216 . G A 2731 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.67;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2764,288,0 chrXII 759268 . A G 3533.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.7949;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.08;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3533,381,0 chrXII 759438 . A G 3851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=4.277;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-0.814;QD=23.20;ReadPosRankSum=1.649;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3851,414,0 chrXII 759450 . G T 2689 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-0.417;QD=17.02;ReadPosRankSum=1.666;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2722,312,0 chrXII 759452 . A G 2725 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.01;FS=3.508;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-0.121;QD=17.25;ReadPosRankSum=1.622;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2758,315,0 chrXII 759458 . A C 3153 SnpCluster AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.2338;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=18.99;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3186,342,0 chrXII 759842 . T C 2888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=146;Dels=0.00;FS=3.037;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-0.716;QD=19.78;ReadPosRankSum=2.298;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2921,309,0 chrXII 759860 . T C 2666 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=17.89;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2699,285,0 chrXII 759872 . G A 2445 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=15.98;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2478,261,0 chrXII 759887 . G A 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.6822;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=-0.228;QD=16.40;ReadPosRankSum=1.028;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3051,321,0 chrXII 759985 . A G 4774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.649;DP=196;Dels=0.00;FS=11.857;HaplotypeScore=14.3942;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.462;QD=24.36;ReadPosRankSum=3.753;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:5,190:196:99:4774,505,0 chrXII 760025 . T C 3663.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.94;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3663,396,0 chrXII 760163 . C G 2685 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.75;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2718,291,0 chrXII 760343 . A G 1802 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=23.71;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1835,195,0 chrXII 760390 . G A 2166 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=25.79;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2199,228,0 chrXII 760396 . G A 2077 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=24.44;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2110,225,0 chrXII 760502 . C A 2732 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=22.96;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2765,297,0 chrXII 760603 . C T 2549 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=40.89;MQ0=0;QD=15.73;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2582,267,0 chrXII 760610 . A G 2193 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=3.897;HaplotypeScore=2.7085;MLEAC=2;MLEAF=1.00;MQ=38.57;MQ0=0;MQRankSum=-1.710;QD=13.97;ReadPosRankSum=1.710;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2226,240,0 chrXII 760613 . A G 2111 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.9198;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;QD=13.80;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2144,225,0 chrXII 760615 . T A 2151 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;MQRankSum=-1.106;QD=13.88;ReadPosRankSum=1.643;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2184,231,0 chrXII 760639 . T C 1780 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.95;MQ0=0;QD=11.79;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:1813,192,0 chrXII 760652 . C A 1649 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;QD=11.45;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:1682,174,0 chrXII 760719 . A T 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=-0.337;QD=22.32;ReadPosRankSum=1.708;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3247,339,0 chrXII 761014 . T A 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=163;Dels=0.00;FS=7.253;HaplotypeScore=4.0369;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;MQRankSum=0.128;QD=18.48;ReadPosRankSum=2.389;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3046,324,0 chrXII 761019 . C T 3169 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.4464;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=19.21;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3202,330,0 chrXII 761052 . C T 3155 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.48;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3188,330,0 chrXII 761145 . C T 4690.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.8874;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.55;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4690,487,0 chrXII 761193 . T C 3669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=168;Dels=0.00;FS=7.274;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=0.782;QD=21.84;ReadPosRankSum=2.406;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3669,390,0 chrXII 761210 . G A 3191 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=20.72;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3224,333,0 chrXII 761214 . C T 3001 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=19.61;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3034,309,0 chrXII 761335 . T C 4545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.0835;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.266;QD=21.85;ReadPosRankSum=1.682;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4545,495,0 chrXII 761396 . G A 3866.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.36;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3866,417,0 chrXII 761426 . A T 3882.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.57;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3882,403,0 chrXII 761502 . C G 5065.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.45;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5065,544,0 chrXII 761602 . C T 5118.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.4443;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.46;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5118,517,0 chrXII 761922 . T A 3422.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.54;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3422,352,0 chrXII 762049 . G A 2959 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3073;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.06;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2992,309,0 chrXII 762111 . A G 3073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.438;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.0685;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.676;QD=21.34;ReadPosRankSum=2.140;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3106,312,0 chrXII 762180 . A G 2660 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.45;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2693,291,0 chrXII 762220 . T G 2221 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.76;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2254,237,0 chrXII 762443 . C A 685 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.03;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:75:718,75,0 chrXII 762492 . A G 328 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.40;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:39:361,39,0 chrXII 762817 . G A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.48;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3312,340,0 chrXII 762938 . T C 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=168;Dels=0.00;FS=2.745;HaplotypeScore=7.7663;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.110;QD=24.10;ReadPosRankSum=2.347;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:4049,438,0 chrXII 763151 . A G 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6750;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-1.692;QD=24.30;ReadPosRankSum=1.712;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4229,447,0 chrXII 763199 . C T 3720.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.63;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3720,390,0 chrXII 763214 . G A 3840.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.72;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3840,405,0 chrXII 763325 . A G 3805.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6554;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.39;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3805,408,0 chrXII 763412 . T C 4140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=173;Dels=0.00;FS=8.112;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.992;QD=23.93;ReadPosRankSum=3.336;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:4,166:173:99:4140,441,0 chrXII 763502 . T C 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=163;Dels=0.00;FS=3.146;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.371;QD=21.74;ReadPosRankSum=1.690;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3544,381,0 chrXII 763666 . C A 3843.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.5309;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=19.12;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3843,394,0 chrXII 763742 . C T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.0279;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.21;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4334,459,0 chrXII 764240 . A G 5022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.770;DP=224;Dels=0.00;FS=5.339;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.293;QD=22.42;ReadPosRankSum=2.933;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:3,220:224:99:5022,534,0 chrXII 764339 . A G 4287.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.6626;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.54;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4287,459,0 chrXII 764389 . G T 4341.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=22.49;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,188:193:99:4341,465,0 chrXII 764398 . A G 4156.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=22.34;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4156,441,0 chrXII 764454 . A G 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=175;Dels=0.00;FS=10.547;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.231;QD=22.65;ReadPosRankSum=2.948;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:3963,420,0 chrXII 764481 . T C 3845.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.031;QD=23.30;ReadPosRankSum=1.711;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3845,417,0 chrXII 764614 . A G 3828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=170;Dels=0.00;FS=6.807;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.080;QD=22.52;ReadPosRankSum=2.333;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:3828,405,0 chrXII 764623 . T C 3806.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=21.75;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3806,414,0 chrXII 764781 . A C 4672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=209;Dels=0.00;FS=9.223;HaplotypeScore=11.9785;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.078;QD=22.35;ReadPosRankSum=2.966;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:3,203:209:99:4672,504,0 chrXII 764796 . T A 4983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.2857;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=-0.874;QD=22.05;ReadPosRankSum=1.701;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4983,520,0 chrXII 765047 . A G 5837.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=11.8262;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.62;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5837,613,0 chrXII 765566 . A G 5900.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=13.3270;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.27;SB=-3.607e+03 GT:AD:DP:GQ:PL 1/1:0,290:291:99:5900,642,0 chrXII 765605 . G A 6277.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=15.6822;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.78;SB=-3.486e+03 GT:AD:DP:GQ:PL 1/1:0,301:302:99:6277,655,0 chrXII 765686 . C A 6834.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=29.1459;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.22;SB=-4.519e+03 GT:AD:DP:GQ:PL 1/1:0,337:338:99:6834,712,0 chrXII 765881 . A C 5150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=-0.707;QD=21.46;ReadPosRankSum=1.703;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:1,239:240:99:5150,550,0 chrXII 765920 . A G 4016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.725;DP=242;Dels=0.00;FS=7.882;HaplotypeScore=3.6941;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;MQRankSum=-2.763;QD=16.60;ReadPosRankSum=3.770;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:5,237:242:99:4016,432,0 chrXII 765921 . C T 4178.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=17.70;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,233:236:99:4178,427,0 chrXII 765944 . A G 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;MQRankSum=0.146;QD=15.60;ReadPosRankSum=1.718;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:3728,405,0 chrXII 765971 . A G 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=6.2526;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=-0.353;QD=16.42;ReadPosRankSum=1.655;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:3710,393,0 chrXII 765989 . G A 3604.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;QD=16.61;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:3604,370,0 chrXII 766006 . C T 3641.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=17.85;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3641,370,0 chrXII 766039 . C T 3540.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.11;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3540,378,0 chrXII 766116 . A T 3636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=171;Dels=0.00;FS=2.957;HaplotypeScore=150.4786;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.093;QD=21.26;ReadPosRankSum=2.421;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3636,393,0 chrXII 766225 . T G 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.523;QD=23.67;ReadPosRankSum=2.300;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3527,381,0 chrXII 766489 . G A 803 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=14.9791;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=17.09;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:87:836,87,0 chrXII 766775 . C T 4636.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.3272;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.40;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4636,487,0 chrXII 767243 . G A 3082 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.00;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3115,321,0 chrXII 767244 . G A 3074 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.94;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3107,321,0 chrXII 767252 . T G 2793 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.82;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2826,303,0 chrXII 767369 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.73;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3363,340,0 chrXII 768100 . T C 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=130;Dels=0.00;FS=2.683;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.804;QD=25.72;ReadPosRankSum=2.412;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3343,354,0 chrXII 768577 . A G 2765 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2798,306,0 chrXII 768623 . A G 2516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.210;DP=116;Dels=0.00;FS=6.295;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.904;QD=21.69;ReadPosRankSum=2.406;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:2,111:116:99:2549,267,0 chrXII 768800 . T C 3113 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.06;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3146,330,0 chrXII 768836 . T C 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.393;QD=23.16;ReadPosRankSum=1.659;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3312,351,0 chrXII 769193 . T C 698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.025;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.178;QD=19.94;ReadPosRankSum=2.310;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:2,33:35:78:731,78,0 chrXII 769226 . T C 1428 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.20;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1461,150,0 chrXII 769312 . G A 2224 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.80;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2257,231,0 chrXII 769888 . A G 4629.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.0147;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4629,495,0 chrXII 770182 . T C 3342.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3342,354,0 chrXII 770323 . C T 2905 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.8298;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.52;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2938,309,0 chrXII 770364 . G A 3672.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.54;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3672,379,0 chrXII 770488 . T G 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.563;QD=26.05;ReadPosRankSum=1.708;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3725,405,0 chrXII 770630 . G A 5127.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=23.74;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:5127,532,0 chrXII 770842 . A T 5002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=3.3080;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.843;QD=21.75;ReadPosRankSum=1.702;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5002,526,0 chrXII 770846 . G A 4857.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.30;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4857,519,0 chrXII 770890 . T A 3892.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.86;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3892,414,0 chrXII 774096 . G C 2929 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.7967;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,127:132:99:2962,315,0 chrXII 774720 . G A 4001.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4001,421,0 chrXII 774798 . C T 4137.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4137,418,0 chrXII 774849 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3287,348,0 chrXII 775104 . T C 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.638;QD=24.22;ReadPosRankSum=1.701;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2721,288,0 chrXII 775524 . C T 4340.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.66;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4340,448,0 chrXII 775537 . C T 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=173;Dels=0.00;FS=4.095;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.181;QD=24.13;ReadPosRankSum=-0.060;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4174,428,0 chrXII 777177 . T C 4567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.689;QD=24.55;ReadPosRankSum=1.676;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4567,492,0 chrXII 777784 . G A 5841.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.62;SB=-3.190e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5841,592,0 chrXII 777814 . A G 5326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=220;Dels=0.00;FS=3.017;HaplotypeScore=7.4858;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.892;QD=24.21;ReadPosRankSum=2.427;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:5326,574,0 chrXII 777868 . G A 3953.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.5589;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.67;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3953,420,0 chrXII 777907 . C T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.8087;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.38;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3423,349,0 chrXII 778284 . A G 4408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.789;QD=23.08;ReadPosRankSum=1.714;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4408,486,0 chrXII 779222 . G A 5530.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=15.2131;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.47;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:5530,568,0 chrXII 779607 . T C 4478.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.6589;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.47;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4478,475,0 chrXII 780114 . T C 4595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.566;QD=22.64;ReadPosRankSum=1.681;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4595,484,0 chrXII 780550 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.678;QD=25.40;ReadPosRankSum=1.705;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3302,351,0 chrXII 780728 . C G 2411 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.11;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2444,258,0 chrXII 780841 . A G 1825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.400;QD=23.10;ReadPosRankSum=1.688;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1858,198,0 chrXII 782080 . G T 4152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=169;Dels=0.00;FS=3.561;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.887;QD=24.57;ReadPosRankSum=0.268;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:4152,436,0 chrXII 782204 . G A 4370.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.11;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4370,468,0 chrXII 782839 . A G 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.799;QD=20.31;ReadPosRankSum=2.409;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2490,267,0 chrXII 782905 . G T 2978 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8904;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3011,307,0 chrXII 783055 . T G 2679 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2712,297,0 chrXII 783530 . T C 2317 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.39;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2350,249,0 chrXII 784149 . A G 4978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.668;DP=239;Dels=0.00;FS=2.469;HaplotypeScore=14.0774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-2.223;QD=20.83;ReadPosRankSum=2.920;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:3,236:239:99:4978,526,0 chrXII 784218 . C T 4881.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.1546;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.65;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4881,508,0 chrXII 784477 . T A 2318 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.48;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2351,246,0 chrXII 784820 . C G 2223 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.45;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2256,243,0 chrXII 785227 . C T 3695.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.81;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3695,393,0 chrXII 785340 . C T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.5981;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=21.19;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3411,346,0 chrXII 785350 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.0941;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.87;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3172,325,0 chrXII 786201 . G T 2984 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=22.44;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3017,315,0 chrXII 786233 . T C 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=5.037;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.851;QD=21.40;ReadPosRankSum=1.703;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2580,285,0 chrXII 786288 . C T 2523 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=13.3761;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.13;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2556,264,0 chrXII 786333 . T C 3212.98 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=24.72;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3246,345,0 chrXII 786375 . C T 2960 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=22.60;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2993,312,0 chrXII 786420 . C T 1762 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=14.56;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1795,189,0 chrXII 786421 . A G 1691 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=4.881;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;MQRankSum=-1.703;QD=14.09;ReadPosRankSum=1.646;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1724,183,0 chrXII 786429 . A C 1471 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.39;MQ0=0;QD=12.16;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1504,162,0 chrXII 786436 . A G 1239 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=10.32;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1272,138,0 chrXII 786439 . C T 1179 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.02;MQ0=0;QD=10.34;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1212,126,0 chrXII 786447 . A G 1095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=4.488;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;MQRankSum=-1.266;QD=10.53;ReadPosRankSum=1.666;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1128,123,0 chrXII 786552 . G A 3588.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=21.75;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3588,372,0 chrXII 786562 . T C 3421.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.38;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3421,360,0 chrXII 786826 . T C 3513.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=25.46;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3513,372,0 chrXII 786991 . A G 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.594;DP=159;Dels=0.00;FS=11.132;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-1.644;QD=22.22;ReadPosRankSum=3.754;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:5,152:159:99:3533,390,0 chrXII 787039 . G C 3101 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.69;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:3134,342,0 chrXII 787060 . A G 3119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=140;Dels=0.00;FS=3.399;HaplotypeScore=5.9613;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-1.064;QD=22.28;ReadPosRankSum=1.707;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3152,336,0 chrXII 787306 . C T 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9571;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=1.184;QD=17.43;ReadPosRankSum=1.472;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2125,228,0 chrXII 787307 . T A 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7458;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=0.870;QD=17.41;ReadPosRankSum=2.250;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2175,234,0 chrXII 787382 . T C 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.877;QD=23.76;ReadPosRankSum=2.409;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:2,120:123:99:2956,309,0 chrXII 787510 . A C 4353.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.4531;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.05;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4353,465,0 chrXII 787756 . T C 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=182;Dels=0.00;FS=10.292;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;MQRankSum=0.034;QD=21.59;ReadPosRankSum=2.382;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3930,423,0 chrXII 788350 . T C 6863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.164;DP=289;Dels=0.00;FS=13.468;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=1.896;QD=23.75;ReadPosRankSum=3.388;SB=-3.359e+03 GT:AD:DP:GQ:PL 1/1:4,283:289:99:6863,742,0 chrXII 788475 . A G 6069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=253;Dels=0.00;FS=6.052;HaplotypeScore=18.4378;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=1.474;QD=23.99;ReadPosRankSum=2.972;SB=-3.313e+03 GT:AD:DP:GQ:PL 1/1:3,249:253:99:6069,646,0 chrXII 788536 . A G 5675.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.66;SB=-3.306e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5675,621,0 chrXII 788548 . G A 5232.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.89;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5232,544,0 chrXII 788601 . C A 4005.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=5.7141;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;QD=18.04;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4005,418,0 chrXII 788615 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=211;Dels=0.00;FS=5.928;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=42.22;MQ0=0;MQRankSum=-1.471;QD=17.40;ReadPosRankSum=2.938;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:3,208:211:99:3671,390,0 chrXII 788626 . A G 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.397;DP=221;Dels=0.00;FS=9.146;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;MQRankSum=-1.164;QD=16.21;ReadPosRankSum=3.366;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:4,217:221:99:3583,387,0 chrXII 788638 . A G 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.967;DP=220;Dels=0.00;FS=9.277;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;MQRankSum=-1.519;QD=15.77;ReadPosRankSum=2.939;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:3,212:220:99:3469,369,0 chrXII 788663 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=216;Dels=0.00;FS=6.082;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;MQRankSum=-1.780;QD=15.34;ReadPosRankSum=2.967;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:3,212:216:99:3313,351,0 chrXII 788682 . T C 4164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=247;Dels=0.00;FS=3.028;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;MQRankSum=1.178;QD=16.86;ReadPosRankSum=2.430;SB=-3.203e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:4164,447,0 chrXII 788815 . C T 5536.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=22.9260;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=22.14;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5536,583,0 chrXII 788874 . A G 5661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=250;Dels=0.00;FS=3.189;HaplotypeScore=16.2716;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;MQRankSum=0.028;QD=22.64;ReadPosRankSum=1.690;SB=-3.193e+03 GT:AD:DP:GQ:PL 1/1:1,247:250:99:5661,595,0 chrXII 788973 . C T 5441.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;QD=21.68;SB=-3.138e+03 GT:AD:DP:GQ:PL 1/1:0,248:251:99:5441,565,0 chrXII 788987 . G A 5871.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=8.0980;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=22.41;SB=-3.546e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5871,610,0 chrXII 789047 . A G 5680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=258;Dels=0.00;FS=6.052;HaplotypeScore=6.7184;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=0.241;QD=22.02;ReadPosRankSum=2.973;SB=-3.433e+03 GT:AD:DP:GQ:PL 1/1:3,255:258:99:5680,604,0 chrXII 789096 . C T 3466.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.3167;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=18.44;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:3466,361,0 chrXII 789104 . T G 2646 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.6750;MLEAC=2;MLEAF=1.00;MQ=38.22;MQ0=0;QD=17.07;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:2679,294,0 chrXII 789125 . T G 1557 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=31.24;MQ0=0;QD=15.26;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1590,174,0 chrXII 789130 . C T 1055 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.53;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1088,114,0 chrXII 789131 . A G 1026 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.15;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1059,114,0 chrXII 789140 . A G 465 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=6.513;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.189;QD=10.11;ReadPosRankSum=2.343;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:2,44:46:57:498,57,0 chrXII 789142 . G A 442 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.05;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:54:475,54,0 chrXII 789146 . T A 426 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.31;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:48:459,48,0 chrXII 789150 . A G 78.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.450;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.676;QD=7.85;ReadPosRankSum=2.450;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:5,5:10:12:111,12,0 chrXII 789151 . C T 80.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.10;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:113,12,0 chrXII 789152 . A G 84.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.90;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:117,12,0 chrXII 789188 . T G 53.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.250;DP=45;Dels=0.00;FS=5.519;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.137;QD=1.20;ReadPosRankSum=3.250;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:4,41:45:9:86,9,0 chrXII 789193 . C T 177.03 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.69;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:24:210,24,0 chrXII 789194 . A G 180.03 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.75;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:24:213,24,0 chrXII 789209 . T G 877 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=2.968;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.553;QD=8.05;ReadPosRankSum=2.405;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:96:910,96,0 chrXII 789214 . C T 988 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.17;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1021,108,0 chrXII 789215 . A G 964 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.7306;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=0;QD=7.90;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:997,108,0 chrXII 789226 . G A 451.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.989;DP=160;Dels=0.00;FS=16.709;HaplotypeScore=1.9900;MLEAC=1;MLEAF=0.500;MQ=29.59;MQ0=0;MQRankSum=-0.824;QD=2.82;ReadPosRankSum=-7.268;SB=-3.590e+02 GT:AD:DP:GQ:PL 0/1:101,59:160:99:481,0,545 chrXII 789230 . G A 453.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;DP=163;Dels=0.00;FS=16.115;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=29.58;MQ0=0;MQRankSum=-0.511;QD=2.78;ReadPosRankSum=-7.409;SB=-4.420e+02 GT:AD:DP:GQ:PL 0/1:101,62:163:99:483,0,540 chrXII 789234 . A G 592.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;DP=170;Dels=0.00;FS=18.954;HaplotypeScore=2.9545;MLEAC=1;MLEAF=0.500;MQ=29.55;MQ0=0;MQRankSum=0.466;QD=3.48;ReadPosRankSum=-7.038;SB=-5.020e+02 GT:AD:DP:GQ:PL 0/1:101,69:170:99:622,0,566 chrXII 789247 . A G 1048.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.768;DP=201;Dels=0.00;FS=19.542;HaplotypeScore=1.9612;MLEAC=1;MLEAF=0.500;MQ=31.50;MQ0=0;MQRankSum=2.220;QD=5.21;ReadPosRankSum=-1.869;SB=-8.650e+02 GT:AD:DP:GQ:PL 0/1:101,100:201:99:1078,0,472 chrXII 789259 . A G 1376.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.287;DP=233;Dels=0.00;FS=21.154;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=33.65;MQ0=0;MQRankSum=2.055;QD=5.91;ReadPosRankSum=3.429;SB=-1.181e+03 GT:AD:DP:GQ:PL 0/1:97,135:233:99:1406,0,483 chrXII 789264 . T C 1381.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.689;DP=238;Dels=0.00;FS=26.024;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=34.41;MQ0=0;MQRankSum=-0.843;QD=5.80;ReadPosRankSum=8.133;SB=-1.217e+03 GT:AD:DP:GQ:PL 0/1:97,141:238:99:1411,0,411 chrXII 789266 . G A 1479.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.553;DP=245;Dels=0.00;FS=30.315;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=35.72;MQ0=0;MQRankSum=0.110;QD=6.04;ReadPosRankSum=8.052;SB=-1.322e+03 GT:AD:DP:GQ:PL 0/1:94,151:245:99:1509,0,417 chrXII 789268 . G A 1477.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.421;DP=239;Dels=0.00;FS=29.518;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=36.03;MQ0=0;MQRankSum=2.059;QD=6.18;ReadPosRankSum=9.652;SB=-1.315e+03 GT:AD:DP:GQ:PL 0/1:87,151:239:99:1507,0,364 chrXII 789269 . G A 1469.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.042;DP=239;Dels=0.00;FS=31.578;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=36.03;MQ0=0;MQRankSum=3.301;QD=6.15;ReadPosRankSum=10.342;SB=-1.304e+03 GT:AD:DP:GQ:PL 0/1:86,153:239:99:1499,0,387 chrXII 789272 . G A 305.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DP=237;Dels=0.00;FS=17.176;HaplotypeScore=3.0311;MLEAC=1;MLEAF=0.500;MQ=36.08;MQ0=0;MQRankSum=-2.324;QD=1.29;ReadPosRankSum=-7.725;SB=-4.510e+02 GT:AD:DP:GQ:PL 0/1:172,65:237:99:335,0,1705 chrXII 789275 . G A 266.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.306;DP=242;Dels=0.00;FS=14.713;HaplotypeScore=9.4122;MLEAC=1;MLEAF=0.500;MQ=37.20;MQ0=0;MQRankSum=-3.517;QD=1.10;ReadPosRankSum=-7.970;SB=-2.430e+02 GT:AD:DP:GQ:PL 0/1:182,58:242:99:296,0,1868 chrXII 789280 . A G 151.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.357;DP=254;Dels=0.00;FS=15.626;HaplotypeScore=14.0895;MLEAC=1;MLEAF=0.500;MQ=38.86;MQ0=0;MQRankSum=-2.472;QD=0.59;ReadPosRankSum=-9.955;SB=-1.200e+02 GT:AD:DP:GQ:PL 0/1:202,51:254:99:181,0,2105 chrXII 789615 . C G 2323 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.0217;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=17.60;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2356,255,0 chrXII 790301 . T C 3034 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.67;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:3067,327,0 chrXII 790397 . G T 3583.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8442;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.89;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3583,381,0 chrXII 790484 . A G 4001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=3.115;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.866;QD=23.82;ReadPosRankSum=1.711;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4001,421,0 chrXII 790500 . G A 4262.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.4155;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.91;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4262,456,0 chrXII 790747 . C T 8692.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=20.2606;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=26.91;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:0,323:323:99:8692,881,0 chrXII 791005 . C A 7493.01 PASS AC=2;AF=1.00;AN=2;DP=360;Dels=0.00;FS=0.000;HaplotypeScore=30.8064;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.81;SB=-4.359e+03 GT:AD:DP:GQ:PL 1/1:0,357:360:99:7493,784,0 chrXII 791117 . C T 7152.01 PASS AC=2;AF=1.00;AN=2;DP=357;Dels=0.00;FS=0.000;HaplotypeScore=21.5361;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=20.03;SB=-4.602e+03 GT:AD:DP:GQ:PL 1/1:0,355:357:99:7152,739,0 chrXII 791350 . C T 5199.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=32.5388;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.60;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5199,547,0 chrXII 791497 . G T 6215.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.37;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:6215,658,0 chrXII 792187 . C T 1470 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.94;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1503,153,0 chrXII 792203 . C T 1793 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=24.56;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1826,192,0 chrXII 792265 . G A 2040 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=22.67;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2073,210,0 chrXII 792277 . C G 1955 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=21.48;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1988,210,0 chrXII 792290 . A T 2048 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=20.08;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2081,222,0 chrXII 792417 . G A 4484.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;QD=25.77;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4484,463,0 chrXII 792538 . C G 4284.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.52;MQ0=0;QD=23.67;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4284,462,0 chrXII 792556 . C T 3472.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.78;MQ0=0;QD=21.97;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3472,375,0 chrXII 792571 . T C 2891 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;QD=19.67;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2924,327,0 chrXII 792585 . A G 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=31.21;MQ0=0;MQRankSum=-1.277;QD=18.24;ReadPosRankSum=2.385;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2823,309,0 chrXII 792600 . G C 2084 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.15;MQ0=0;QD=16.81;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2117,240,0 chrXII 792601 . T G 2123 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=11.938;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.07;MQ0=0;MQRankSum=1.649;QD=16.98;ReadPosRankSum=1.704;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2156,240,0 chrXII 792605 . T C 1792 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.07;MQ0=0;MQRankSum=1.453;QD=14.34;ReadPosRankSum=-1.369;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:1825,213,0 chrXII 792606 . A C 1537 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.07;MQ0=0;QD=12.30;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1570,195,0 chrXII 792640 . A C 1782 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.899;DP=149;Dels=0.00;FS=2.409;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=0;MQRankSum=-1.399;QD=11.96;ReadPosRankSum=2.953;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:3,146:149:99:1815,224,0 chrXII 792641 . C A 1828 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.124;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=33.86;MQ0=0;MQRankSum=-2.126;QD=12.03;ReadPosRankSum=2.288;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:1861,230,0 chrXII 792644 . G T 2304 SnpCluster AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=34.45;MQ0=0;QD=13.88;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2337,249,0 chrXII 792691 . C G 3086 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;QD=16.59;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3119,339,0 chrXII 792702 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.69;MQ0=0;QD=17.02;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3267,348,0 chrXII 792737 . A T 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=41.32;MQ0=0;MQRankSum=-0.702;QD=15.16;ReadPosRankSum=1.710;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2429,264,0 chrXII 792747 . C T 2054 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.85;MQ0=0;QD=14.57;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2087,231,0 chrXII 792764 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=11.85;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1325,141,0 chrXII 792789 . A T 634 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=10.06;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:72:667,72,0 chrXII 792807 . T C 605 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;QD=9.60;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:75:638,75,0 chrXII 792821 . A G 755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=68;Dels=0.00;FS=9.849;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.38;MQ0=0;MQRankSum=1.774;QD=11.10;ReadPosRankSum=2.804;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:3,64:68:90:788,90,0 chrXII 792826 . C T 871 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=13.20;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:904,102,0 chrXII 792875 . C T 1991 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=19.91;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2024,228,0 chrXII 792945 . A T 1717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=78;Dels=0.00;FS=2.883;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;MQRankSum=-0.901;QD=22.01;ReadPosRankSum=2.387;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1750,186,0 chrXII 792972 . T C 1712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=79;Dels=0.00;FS=4.241;HaplotypeScore=3.4373;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;MQRankSum=-0.472;QD=21.67;ReadPosRankSum=1.687;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,76:79:99:1745,189,0 chrXII 793009 . G A 1617 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;QD=24.13;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1650,171,0 chrXII 793142 . G A 1490 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=24.83;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1523,156,0 chrXII 793293 . A G 693 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.763;DP=60;Dels=0.00;FS=127.826;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=29.14;MQ0=0;MQRankSum=2.378;QD=11.55;ReadPosRankSum=6.409;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:28,32:60:78:726,78,0 chrXII 793335 . T C 852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.84;MQ0=0;MQRankSum=-1.062;QD=13.74;ReadPosRankSum=1.676;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:1,61:62:96:885,96,0 chrXII 793353 . C T 1398 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=17.92;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1431,150,0 chrXII 793421 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=25.55;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2741,291,0 chrXII 793518 . A T 2364 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.15;MQ0=0;QD=17.91;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2397,261,0 chrXII 793519 . T C 2279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=133;Dels=0.00;FS=2.412;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.12;MQ0=0;MQRankSum=-2.190;QD=17.14;ReadPosRankSum=2.841;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2312,264,0 chrXII 793539 . C T 2212 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=0;QD=16.39;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2245,246,0 chrXII 793555 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.57;MQ0=0;QD=14.74;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2171,237,0 chrXII 793558 . A G 2104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;MQRankSum=0.049;QD=14.82;ReadPosRankSum=1.708;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2137,240,0 chrXII 793651 . A G 2701 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=43.79;MQ0=0;QD=18.89;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2734,294,0 chrXII 793681 . G A 2502 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=0;QD=16.46;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2535,273,0 chrXII 793689 . C T 2184 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.80;MQ0=0;QD=14.56;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2217,258,0 chrXII 793695 . A G 1934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.17;MQ0=0;MQRankSum=-1.545;QD=13.07;ReadPosRankSum=1.638;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:1967,216,0 chrXII 793706 . G T 1874 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.08;MQ0=0;QD=13.68;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1907,207,0 chrXII 793723 . G A 1739 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;QD=13.27;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1772,207,0 chrXII 793732 . G C 1651 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=0;QD=13.99;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:1684,195,0 chrXII 793757 . G A 1831 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=33.66;MQ0=0;QD=15.13;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:1864,213,0 chrXII 793796 . G T 2318 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=14.4342;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;QD=19.81;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2351,252,0 chrXII 793831 . C A 2765 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=23.24;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2798,303,0 chrXII 793903 . G T 2129 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=23.92;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2162,222,0 chrXII 794003 . T G 1148 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=3.908;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.33;MQ0=0;MQRankSum=0.514;QD=12.62;ReadPosRankSum=1.694;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1181,129,0 chrXII 794006 . T C 1084 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=0;QD=12.46;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1117,117,0 chrXII 794008 . T C 1085 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.92;MQ0=0;QD=12.62;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1118,120,0 chrXII 794074 . A G 1442 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=15.51;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1475,156,0 chrXII 794190 . G A 2085 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=22.91;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2118,222,0 chrXII 794238 . T A 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=0.061;QD=23.16;ReadPosRankSum=1.641;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2696,282,0 chrXII 794427 . T A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=25.36;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3880,406,0 chrXII 794440 . G A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=26.19;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3771,388,0 chrXII 794633 . C T 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=127;Dels=0.00;FS=4.376;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-1.320;QD=23.79;ReadPosRankSum=-1.485;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3054,296,0 chrXII 794638 . T C 2803 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.79;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2836,303,0 chrXII 795036 . C A 2545 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.20;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2578,273,0 chrXII 795312 . G A 2199 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8591;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.65;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2232,225,0 chrXII 795548 . A G 1707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=4.586;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.176;QD=24.74;ReadPosRankSum=1.682;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1740,186,0 chrXII 795919 . C T 3204 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.05;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3237,339,0 chrXII 795999 . A G 2691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.310;QD=23.40;ReadPosRankSum=1.672;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2724,288,0 chrXII 796025 . A T 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.687;QD=22.51;ReadPosRankSum=1.702;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2644,273,0 chrXII 796042 . C T 2565 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1987;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=24.20;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2598,267,0 chrXII 796074 . G A 2125 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.04;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2158,228,0 chrXII 796093 . G A 2079 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.66;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2112,216,0 chrXII 796132 . T A 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=3.112;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.490;QD=24.44;ReadPosRankSum=1.692;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2135,219,0 chrXII 796413 . T A 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.256;QD=20.36;ReadPosRankSum=1.626;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2700,282,0 chrXII 796574 . T C 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=158;Dels=0.00;FS=10.819;HaplotypeScore=9.4968;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=1.545;QD=21.81;ReadPosRankSum=2.532;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:3,154:158:99:3446,363,0 chrXII 796621 . A T 4658.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=25.04;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4658,484,0 chrXII 796703 . C T 4326.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.3962;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=27.21;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4326,439,0 chrXII 796778 . G C 2864 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=23.10;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2897,303,0 chrXII 796782 . C T 2599 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=21.48;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2632,279,0 chrXII 796814 . G C 2738 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.39;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2771,297,0 chrXII 796855 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.71;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3189,336,0 chrXII 796901 . T A 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=5.229;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.613;QD=22.88;ReadPosRankSum=1.652;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3007,315,0 chrXII 797023 . C T 2358 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=24.56;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2391,255,0 chrXII 797168 . G A 2229 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.49;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2262,234,0 chrXII 797300 . A T 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.638;DP=164;Dels=0.00;FS=17.064;HaplotypeScore=136.6453;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-1.338;QD=0.27;ReadPosRankSum=2.871;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:9:77,9,0 chrXII 797627 . C T 5029.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.50;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5029,517,0 chrXII 797757 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=16.26;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2537,264,0 chrXII 797913 . G C 2865 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.46;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2898,309,0 chrXII 797945 . G A 2731 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=23.14;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2764,282,0 chrXII 797990 . C T 2324 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=20.75;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2357,246,0 chrXII 797996 . C T 2177 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=19.10;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2210,225,0 chrXII 798014 . A G 2069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=106;Dels=0.00;FS=3.046;HaplotypeScore=8.2946;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=0.639;QD=19.52;ReadPosRankSum=2.403;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2102,222,0 chrXII 798050 . C T 2325 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.14;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2358,246,0 chrXII 798121 . C T 2904 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.23;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2937,315,0 chrXII 798281 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.5017;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.91;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3264,334,0 chrXII 798476 . C A 4312.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.36;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4312,442,0 chrXII 798538 . G A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.8564;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.84;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3480,361,0 chrXII 798683 . A C 4255.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.18;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4255,451,0 chrXII 798842 . A G 4217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=176;Dels=0.00;FS=3.026;HaplotypeScore=20.0839;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.377;QD=23.96;ReadPosRankSum=2.421;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:2,172:176:99:4217,450,0 chrXII 799085 . T C 4147.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.6100;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=21.16;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4147,441,0 chrXII 799107 . G A 3966.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.07;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:3966,409,0 chrXII 799110 . A G 3755.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=18.32;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:3755,408,0 chrXII 799247 . A G 5251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.665;QD=24.77;ReadPosRankSum=1.699;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:5251,556,0 chrXII 799490 . G A 3743.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3743,393,0 chrXII 799628 . A T 3394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.233;QD=25.33;ReadPosRankSum=1.706;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3394,352,0 chrXII 799693 . A C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=120;Dels=0.00;FS=9.839;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.425;QD=23.68;ReadPosRankSum=2.409;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2875,315,0 chrXII 799947 . C T 3133 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.04;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3166,322,0 chrXII 800195 . G A 2518 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.68;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2551,264,0 chrXII 800240 . T C 2683 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.74;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2716,285,0 chrXII 800495 . A G 3564.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.10;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3564,381,0 chrXII 800672 . T G 2855 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.63;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2888,312,0 chrXII 800888 . G A 2273 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.73;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2306,240,0 chrXII 801245 . A G 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.885;QD=20.24;ReadPosRankSum=1.657;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2866,300,0 chrXII 801257 . A G 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=157;Dels=0.00;FS=3.027;HaplotypeScore=7.4095;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-1.552;QD=19.46;ReadPosRankSum=2.418;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3088,333,0 chrXII 801972 . A G 4495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=198;Dels=0.00;FS=8.264;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.545;QD=22.70;ReadPosRankSum=2.349;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:2,194:198:99:4495,492,0 chrXII 802066 . A T 3941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=181;Dels=0.00;FS=3.826;HaplotypeScore=14.7812;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.086;QD=21.77;ReadPosRankSum=1.675;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3941,415,0 chrXII 802287 . C T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.6946;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.49;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3567,375,0 chrXII 802510 . T A 1531 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=17.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1564,162,0 chrXII 802668 . T C 2892 filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2925,309,0 chrXII 802767 . A G 2274 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=24.99;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2307,249,0 chrXII 803013 . C T 3984.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.08;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3984,426,0 chrXII 803022 . T C 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.281;DP=186;Dels=0.00;FS=12.375;HaplotypeScore=3.0340;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.559;QD=20.37;ReadPosRankSum=3.385;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:4,182:186:99:3788,417,0 chrXII 803070 . T C 4745.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.18;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:4745,516,0 chrXII 803175 . C T 5066.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.32;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5066,529,0 chrXII 803215 . A G 3959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=199;Dels=0.00;FS=7.345;HaplotypeScore=29.1699;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.963;QD=19.89;ReadPosRankSum=2.324;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:2,193:199:99:3959,423,0 chrXII 803430 . G C 4638.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.1491;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.67;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,210:214:99:4638,507,0 chrXII 803492 . G A 6261.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=8.0661;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.28;SB=-3.397e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:6261,652,0 chrXII 803546 . T C 6752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=287;Dels=0.00;FS=6.346;HaplotypeScore=25.1239;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.313;QD=23.53;ReadPosRankSum=2.424;SB=-3.558e+03 GT:AD:DP:GQ:PL 1/1:2,284:287:99:6752,724,0 chrXII 803736 . C A 5816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=0.415;QD=21.23;ReadPosRankSum=1.234;SB=-3.160e+03 GT:AD:DP:GQ:PL 1/1:1,270:274:99:5816,604,0 chrXII 803754 . T C 5039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=3.6214;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;MQRankSum=0.758;QD=17.87;ReadPosRankSum=2.116;SB=-3.079e+03 GT:AD:DP:GQ:PL 1/1:2,279:282:99:5039,546,0 chrXII 803773 . G A 4116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.256;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=5.9160;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;MQRankSum=-0.758;QD=14.34;ReadPosRankSum=2.204;SB=-3.268e+03 GT:AD:DP:GQ:PL 1/1:3,283:287:99:4116,453,0 chrXII 803775 . A C 4137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.146;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=8.2821;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=-1.786;QD=14.22;ReadPosRankSum=3.071;SB=-3.225e+03 GT:AD:DP:GQ:PL 1/1:4,286:291:99:4137,450,0 chrXII 803833 . A G 5778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=21.3628;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.009;QD=17.20;ReadPosRankSum=1.455;SB=-3.287e+03 GT:AD:DP:GQ:PL 1/1:3,330:336:99:5778,642,0 chrXII 803865 . G A 8494.01 filter AC=2;AF=1.00;AN=2;DP=361;Dels=0.00;FS=0.000;HaplotypeScore=23.7455;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.53;SB=-4.617e+03 GT:AD:DP:GQ:PL 1/1:1,356:361:99:8494,886,0 chrXII 804054 . C G 4732.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=21.5142;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=18.78;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:4732,505,0 chrXII 804204 . A G 4883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=226;Dels=0.00;FS=5.864;HaplotypeScore=30.4664;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.772;QD=21.61;ReadPosRankSum=2.942;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:3,222:226:99:4883,523,0 chrXII 804368 . T A 5581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=241;Dels=0.00;FS=5.591;HaplotypeScore=24.4362;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.080;QD=23.16;ReadPosRankSum=1.744;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:3,238:241:99:5581,577,0 chrXII 804612 . G C 5496.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=17.4445;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.55;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:0,253:255:99:5496,594,0 chrXII 804683 . G A 4644.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=21.1587;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=19.59;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,234:237:99:4644,481,0 chrXII 804894 . G A 6243.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=15.8634;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-2.864e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:6243,658,0 chrXII 804978 . T C 4546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=202;Dels=0.00;FS=5.991;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.207;QD=22.50;ReadPosRankSum=2.934;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:3,196:202:99:4546,484,0 chrXII 805190 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.882;DP=159;Dels=0.00;FS=10.519;HaplotypeScore=15.8516;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.785;QD=21.17;ReadPosRankSum=4.144;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:6,153:159:99:3366,363,0 chrXII 805437 . T G 3644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=163;Dels=0.00;FS=3.376;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=0.226;QD=22.36;ReadPosRankSum=1.668;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3644,396,0 chrXII 805452 . T A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.36;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3972,400,0 chrXII 805554 . G A 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.843;QD=23.76;ReadPosRankSum=0.070;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3540,361,0 chrXII 805710 . G A 3270.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.87;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3270,357,0 chrXII 805896 . A G 3913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=156;Dels=0.00;FS=6.995;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.354;QD=25.08;ReadPosRankSum=2.418;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3913,429,0 chrXII 805970 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.1749;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.606;QD=23.66;ReadPosRankSum=1.667;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3786,408,0 chrXII 806179 . A G 6320.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=20.2585;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.03;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,259:263:99:6320,667,0 chrXII 806728 . C G 2536 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.5886;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.81;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2569,273,0 chrXII 806918 . T A 553 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.24;MQ0=0;QD=14.55;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:60:586,60,0 chrXII 806928 . G C 560 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=39.6624;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=12.73;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:66:593,66,0 chrXII 806933 . C T 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=39.6624;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=0.37;SB=-1.668e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:6:47,6,0 chrXII 806941 . A G 547 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=11.40;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:63:580,63,0 chrXII 806943 . C A 572 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=11.92;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:63:605,63,0 chrXII 806954 . C T 564 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;QD=11.06;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:63:597,63,0 chrXII 806956 . C T 594 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;QD=11.65;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:66:627,66,0 chrXII 806963 . C G 409 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=9.09;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:48:442,48,0 chrXII 806965 . T C 403 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=8.96;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:48:436,48,0 chrXII 806972 . T C 344 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;MQRankSum=-1.732;QD=7.32;ReadPosRankSum=1.659;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:42:377,42,0 chrXII 806983 . C T 403 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=0;QD=8.57;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:45:436,45,0 chrXII 807004 . A G 498 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=10.37;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:57:531,57,0 chrXII 807074 . A G 1585 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=26.42;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1618,171,0 chrXII 807120 . T C 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;MQRankSum=-1.213;QD=22.72;ReadPosRankSum=1.675;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1396,150,0 chrXII 807138 . T C 1291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.01;MQ0=0;MQRankSum=-1.325;QD=18.71;ReadPosRankSum=1.630;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1324,150,0 chrXII 807151 . C T 1403 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.60;MQ0=0;QD=19.22;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1436,156,0 chrXII 807178 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.44;MQ0=0;QD=17.04;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1362,144,0 chrXII 807183 . C T 1367 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.74;MQ0=0;QD=16.47;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1400,150,0 chrXII 807250 . A C 2090 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=20.90;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2123,228,0 chrXII 807281 . G C 1695 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=19.26;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1728,186,0 chrXII 807311 . C A 1200 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=14.81;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1233,129,0 chrXII 807344 . C A 1107 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=11.30;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1140,120,0 chrXII 807361 . T C 1482 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=13.60;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1515,162,0 chrXII 807455 . A T 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=136;Dels=0.00;FS=4.061;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=1.706;QD=25.06;ReadPosRankSum=1.706;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3408,354,0 chrXII 807496 . A G 2697 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=16.7826;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.40;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2730,300,0 chrXII 807561 . C T 3481.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=25.41;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3481,360,0 chrXII 807603 . G A 3951.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=25.01;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3951,403,0 chrXII 807708 . T C 3566.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.46;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3566,387,0 chrXII 807737 . C G 3377.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.8385;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.79;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3377,357,0 chrXII 807751 . T C 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0938;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.306;QD=19.90;ReadPosRankSum=1.664;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3097,333,0 chrXII 807795 . C A 2373 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=5.4514;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=17.58;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2406,249,0 chrXII 807813 . A T 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=124;Dels=0.00;FS=3.153;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=0.140;QD=17.46;ReadPosRankSum=1.704;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2198,237,0 chrXII 807829 . A G 2267 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=18.58;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2300,249,0 chrXII 807870 . T A 3064 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.70;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3097,333,0 chrXII 808083 . T A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=23.51;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3339,349,0 chrXII 808098 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.17;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3282,342,0 chrXII 808189 . T C 3220.05 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2507;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.00;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3253,342,0 chrXII 808209 . C T 2650 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=21.90;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2683,273,0 chrXII 808279 . T A 2298 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.89;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2331,237,0 chrXII 808283 . G A 2311 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.63;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2344,243,0 chrXII 808382 . A G 2584 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.7290;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=23.07;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2617,282,0 chrXII 808422 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=24.53;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2560,261,0 chrXII 808446 . C T 2036 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=20.78;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2069,213,0 chrXII 808452 . G A 2222 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=22.00;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2255,231,0 chrXII 808557 . A G 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=5.268;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=1.202;QD=24.65;ReadPosRankSum=1.638;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2794,303,0 chrXII 808596 . G C 2806 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.79;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2839,306,0 chrXII 808607 . G T 2540 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=18.68;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2573,267,0 chrXII 808623 . C T 2543 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=18.16;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2576,264,0 chrXII 808708 . A G 4026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=176;Dels=0.00;FS=7.946;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=0.727;QD=22.88;ReadPosRankSum=2.407;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:2,172:176:99:4026,438,0 chrXII 808734 . A G 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=3.992;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.190;QD=21.39;ReadPosRankSum=1.692;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3701,390,0 chrXII 808761 . G A 4391.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.71;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4391,477,0 chrXII 808805 . A C 5612.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=12.8249;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=23.29;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,237:241:99:5612,612,0 chrXII 808841 . G A 5621.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.3923;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=23.82;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:1,231:236:99:5621,604,0 chrXII 808892 . C T 5652.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=23.65;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5652,586,0 chrXII 808950 . G C 7533.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=15.6388;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=23.91;SB=-3.761e+03 GT:AD:DP:GQ:PL 1/1:0,312:315:99:7533,793,0 chrXII 809005 . A T 8252.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=320;Dels=0.00;FS=2.123;HaplotypeScore=16.5189;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-2.604;QD=25.79;ReadPosRankSum=2.421;SB=-4.316e+03 GT:AD:DP:GQ:PL 1/1:3,314:320:99:8252,856,0 chrXII 809043 . A T 5982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=13.5334;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-0.721;QD=23.83;ReadPosRankSum=1.718;SB=-3.315e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5982,657,0 chrXII 809080 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;MQRankSum=-0.896;QD=19.99;ReadPosRankSum=1.715;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:3978,423,0 chrXII 809082 . G A 3897.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;QD=19.20;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:3897,432,0 chrXII 809130 . G A 3508.01 SnpCluster AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=18.56;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3508,367,0 chrXII 809132 . T C 3306.01 SnpCluster AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=17.77;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3306,363,0 chrXII 809137 . C G 3343.01 SnpCluster AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=18.07;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3343,360,0 chrXII 809231 . C T 4449.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.19;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4449,472,0 chrXII 809333 . C T 2116 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=22.51;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2149,225,0 chrXII 809343 . T C 1768 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=20.32;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1801,195,0 chrXII 809434 . T C 1288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=5.643;HaplotypeScore=6.0670;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=-1.057;QD=16.73;ReadPosRankSum=1.597;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1321,144,0 chrXII 809476 . C T 1169 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=17.71;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1202,126,0 chrXII 809477 . A G 1097 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=17.14;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1130,120,0 chrXII 809492 . A C 1263 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=16.62;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1296,144,0 chrXII 809769 . G A 2310 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=25.67;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2343,240,0 chrXII 809989 . G A 5830.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=13.3245;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=25.80;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5830,595,0 chrXII 810047 . A G 5076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=228;Dels=0.00;FS=5.749;HaplotypeScore=4.7609;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=0.049;QD=22.26;ReadPosRankSum=1.836;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:3,224:228:99:5076,541,0 chrXII 810052 . G A 5165.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=22.75;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5165,523,0 chrXII 810176 . A G 6559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=274;Dels=0.00;FS=3.108;HaplotypeScore=16.2218;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.449;QD=23.94;ReadPosRankSum=1.719;SB=-3.539e+03 GT:AD:DP:GQ:PL 1/1:2,270:274:99:6559,694,0 chrXII 810266 . C T 5859.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=20.6661;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.11;SB=-2.973e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:5859,604,0 chrXII 810333 . G C 5213.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.28;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,228:234:99:5213,556,0 chrXII 810423 . T C 4509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.233;DP=209;Dels=0.00;FS=9.158;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-2.280;QD=21.57;ReadPosRankSum=3.384;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:4,203:209:99:4509,472,0 chrXII 810443 . C T 4552.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.4930;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=21.88;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4552,478,0 chrXII 810674 . T C 4431.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.5538;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=22.72;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4431,477,0 chrXII 810702 . A G 4489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=3.034;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;MQRankSum=-1.250;QD=24.01;ReadPosRankSum=1.695;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4489,477,0 chrXII 810737 . A C 4005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.9678;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=1.172;QD=22.63;ReadPosRankSum=1.299;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:2,171:177:99:4005,432,0 chrXII 810794 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.985;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.8034;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=1.628;QD=24.01;ReadPosRankSum=-0.985;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:4034,396,0 chrXII 810821 . A G 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=172;Dels=0.00;FS=2.894;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;MQRankSum=-1.372;QD=21.52;ReadPosRankSum=2.406;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3701,390,0 chrXII 810830 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=20.58;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3498,366,0 chrXII 810884 . G A 2313 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.0076;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;QD=14.10;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2346,249,0 chrXII 810890 . C T 2191 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.84;MQ0=0;QD=15.01;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2224,231,0 chrXII 810891 . C T 2180 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=15.24;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2213,228,0 chrXII 810905 . T C 2187 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=3.093;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=0;MQRankSum=0.795;QD=13.67;ReadPosRankSum=1.710;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:2220,237,0 chrXII 810911 . C T 2233 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=0;QD=14.22;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2266,237,0 chrXII 810914 . C A 2187 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=0;QD=13.25;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:2220,234,0 chrXII 810923 . G A 2260 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.15;MQ0=0;QD=13.53;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:2293,243,0 chrXII 811064 . A G 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=-1.467;QD=23.69;ReadPosRankSum=1.660;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3412,360,0 chrXII 811113 . G A 3516.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9978;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=22.54;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3516,369,0 chrXII 811123 . G T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;QD=21.99;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3606,373,0 chrXII 811301 . C T 4240.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=24.80;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4240,439,0 chrXII 811334 . A G 5060.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.7944;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.68;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5060,541,0 chrXII 811385 . T C 5348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.1022;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=0.575;QD=24.31;ReadPosRankSum=2.405;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:5348,544,0 chrXII 811433 . T C 5766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.139;DP=246;Dels=0.00;FS=10.578;HaplotypeScore=12.9884;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;MQRankSum=-1.072;QD=23.44;ReadPosRankSum=4.179;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:6,240:246:99:5766,630,0 chrXII 811471 . A G 5030.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=20.36;SB=-2.925e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5030,561,0 chrXII 811472 . G A 5130.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=20.60;SB=-3.022e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:5130,567,0 chrXII 811502 . C T 5299.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=22.17;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5299,567,0 chrXII 811640 . T C 4330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=268;Dels=0.00;FS=3.018;HaplotypeScore=14.7884;MLEAC=2;MLEAF=1.00;MQ=42.12;MQ0=0;MQRankSum=-0.735;QD=16.16;ReadPosRankSum=1.007;SB=-3.073e+03 GT:AD:DP:GQ:PL 1/1:3,260:268:99:4330,480,0 chrXII 811649 . T C 4482.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=16.66;SB=-3.350e+03 GT:AD:DP:GQ:PL 1/1:1,267:269:99:4482,489,0 chrXII 811661 . T C 4470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=270;Dels=0.00;FS=3.141;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=0;MQRankSum=-0.898;QD=16.56;ReadPosRankSum=1.706;SB=-3.528e+03 GT:AD:DP:GQ:PL 1/1:1,269:270:99:4470,498,0 chrXII 811670 . C T 4332.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.87;MQ0=0;QD=16.10;SB=-3.566e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:4332,456,0 chrXII 811673 . C T 4163.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=39.99;MQ0=0;QD=15.25;SB=-3.595e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:4163,462,0 chrXII 811757 . G A 3641.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=19.79;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:2,180:184:99:3641,393,0 chrXII 811802 . A T 4826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=201;Dels=0.00;FS=3.120;HaplotypeScore=12.0616;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.595;QD=24.01;ReadPosRankSum=1.715;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4826,502,0 chrXII 811886 . T C 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=179;Dels=0.00;FS=4.091;HaplotypeScore=7.2393;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;MQRankSum=-0.166;QD=21.85;ReadPosRankSum=1.693;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3911,429,0 chrXII 811914 . T C 3126 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.5752;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.30;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3159,336,0 chrXII 812219 . A G 2784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.398;QD=22.63;ReadPosRankSum=1.647;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2817,300,0 chrXII 812855 . C T 3867.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.32;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3867,414,0 chrXII 812990 . T C 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=157;Dels=0.00;FS=3.066;HaplotypeScore=12.6731;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.799;QD=23.29;ReadPosRankSum=1.710;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3657,393,0 chrXII 813197 . G A 3891.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.1239;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.10;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3891,406,0 chrXII 813236 . C T 4531.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.01;FS=0.000;HaplotypeScore=9.8741;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.76;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4531,475,0 chrXII 813350 . A T 4451.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.73;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4451,463,0 chrXII 813653 . A G 5211.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=236;Dels=0.00;FS=5.721;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.565;QD=22.08;ReadPosRankSum=2.944;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:3,230:236:99:5211,564,0 chrXII 813776 . T A 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=171;Dels=0.00;FS=4.337;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.355;QD=20.26;ReadPosRankSum=1.550;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3464,361,0 chrXII 813812 . T C 3204 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.56;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3237,339,0 chrXII 814017 . G T 4543.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.5589;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.52;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4543,460,0 chrXII 814256 . T C 4717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.469;QD=24.57;ReadPosRankSum=1.714;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4717,499,0 chrXII 814337 . A G 3517.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=22.54;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3517,369,0 chrXII 814364 . A T 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=0.614;QD=20.29;ReadPosRankSum=1.601;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3239,342,0 chrXII 814367 . G A 3035 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=19.46;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3068,327,0 chrXII 814586 . G A 4762.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=25.06;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4762,493,0 chrXII 814658 . G A 4364.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=25.67;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4364,451,0 chrXII 815093 . T C 4827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=223;Dels=0.00;FS=7.679;HaplotypeScore=7.3939;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-1.443;QD=21.65;ReadPosRankSum=2.361;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:2,220:223:99:4827,522,0 chrXII 815108 . C T 4238.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=20.47;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4238,456,0 chrXII 815117 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=19.91;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3981,415,0 chrXII 815222 . T A 4170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=180;Dels=0.00;FS=4.629;HaplotypeScore=20.8361;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=1.001;QD=23.17;ReadPosRankSum=1.694;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4170,436,0 chrXII 815324 . C T 4791.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=24.44;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4791,499,0 chrXII 815357 . G A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=20.69;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4489,480,0 chrXII 815365 . C G 4369.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.1641;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=21.52;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4369,463,0 chrXII 815475 . A G 2559 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.371;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=0;MQRankSum=-1.328;QD=15.70;ReadPosRankSum=1.668;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:2592,282,0 chrXII 815477 . A T 2747 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;MQRankSum=1.386;QD=17.17;ReadPosRankSum=0.325;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2780,280,0 chrXII 815480 . C A 2666 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.80;MQ0=0;QD=15.78;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2699,276,0 chrXII 815496 . G A 2125 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.94;MQ0=0;QD=13.54;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2158,249,0 chrXII 815497 . A C 2058 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.55;MQ0=0;QD=13.28;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2091,246,0 chrXII 815498 . T A 2283 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.441;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-1.057;QD=14.36;ReadPosRankSum=1.689;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2316,258,0 chrXII 815526 . A G 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;MQRankSum=1.294;QD=17.51;ReadPosRankSum=1.690;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:2940,312,0 chrXII 815554 . C T 3681.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=21.16;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3681,379,0 chrXII 815763 . C T 1553 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=25.88;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1586,162,0 chrXII 815769 . T G 1522 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=22.38;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1555,168,0 chrXII 815784 . T G 1772 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=23.01;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1805,195,0 chrXII 815890 . G A 1090 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=0;QD=13.62;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1123,120,0 chrXII 815897 . C T 1010 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=56.2055;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=0;QD=13.12;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1043,111,0 chrXII 815901 . T C 945 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=62.9920;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;QD=11.96;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:978,108,0 chrXII 815907 . T C 157.06 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=62.9920;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=0;QD=2.04;SB=-5.407e+01 GT:AD:DP:GQ:PL 1/1:0,14:77:21:190,21,0 chrXII 815940 . C T 956 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.8554;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;QD=12.75;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:989,102,0 chrXII 815987 . G A 1251 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=17.62;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1284,135,0 chrXII 815995 . C G 1337 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=20.57;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1370,147,0 chrXII 816028 . A G 1272 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;QD=16.10;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1305,147,0 chrXII 816049 . G A 1417 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;QD=15.57;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1450,156,0 chrXII 816058 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=0;QD=14.38;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1471,156,0 chrXII 816068 . A G 1680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;MQRankSum=1.569;QD=15.85;ReadPosRankSum=1.699;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1713,183,0 chrXII 816162 . T C 2022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;MQRankSum=0.363;QD=23.24;ReadPosRankSum=1.692;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,85:87:99:2055,222,0 chrXII 816236 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=24.43;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2769,288,0 chrXII 816279 . G A 3010 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=22.98;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3043,315,0 chrXII 816285 . T C 2721 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=20.93;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2754,300,0 chrXII 816323 . C G 2382 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.89;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2415,255,0 chrXII 816399 . C T 3322.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.23;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3322,348,0 chrXII 816420 . A C 3416.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.46;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3416,369,0 chrXII 816603 . G A 4726.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.9043;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.49;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4726,490,0 chrXII 816648 . T C 3968.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.11;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:3968,432,0 chrXII 816720 . C T 3329.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.12;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3329,343,0 chrXII 816918 . A G 4187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=176;Dels=0.00;FS=8.695;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=1.221;QD=23.79;ReadPosRankSum=2.422;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4187,442,0 chrXII 816966 . C T 4662.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=24.16;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4662,475,0 chrXII 816978 . T A 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=199;Dels=0.00;FS=9.164;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.189;QD=22.63;ReadPosRankSum=3.399;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:4,195:199:99:4503,460,0 chrXII 817044 . A G 4707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=202;Dels=0.00;FS=3.028;HaplotypeScore=12.4293;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.602;QD=23.30;ReadPosRankSum=2.425;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4707,499,0 chrXII 817116 . A G 4893.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.99;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4893,528,0 chrXII 817183 . A G 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=0.041;QD=20.66;ReadPosRankSum=1.711;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3492,375,0 chrXII 817186 . G A 3351.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=19.95;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3351,357,0 chrXII 817279 . A G 4339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.2431;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.064;QD=22.84;ReadPosRankSum=1.677;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4339,462,0 chrXII 817345 . T A 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.507;DP=185;Dels=0.00;FS=16.281;HaplotypeScore=15.3205;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.881;QD=22.86;ReadPosRankSum=3.133;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:6,179:185:99:4229,450,0 chrXII 817376 . T A 4627.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.0091;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=24.61;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4627,481,0 chrXII 817463 . G A 3110 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.56;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3143,333,0 chrXII 817525 . G C 3119 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.93;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3152,336,0 chrXII 817587 . C T 2522 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.5227;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.52;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2555,270,0 chrXII 817684 . G C 1493 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=18.90;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1526,171,0 chrXII 817710 . A C 1510 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.02;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=18.41;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1543,168,0 chrXII 817755 . T A 1902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=85;Dels=0.02;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;MQRankSum=-0.134;QD=22.38;ReadPosRankSum=2.331;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1935,201,0 chrXII 817814 . A T 1337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=5.956;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;MQRankSum=-1.732;QD=19.96;ReadPosRankSum=1.681;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1370,144,0 chrXII 817850 . C G 1199 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.77;MQ0=0;QD=14.11;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1232,132,0 chrXII 817851 . G A 1284 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;QD=15.29;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1317,138,0 chrXII 817863 . G T 949 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=11.30;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:982,102,0 chrXII 817870 . A G 777 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=9.96;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:87:810,87,0 chrXII 817876 . G A 857 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=10.99;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:93:890,93,0 chrXII 817907 . T C 923 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=0;QD=12.31;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:956,102,0 chrXII 817938 . C T 988 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=13.00;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1021,105,0 chrXII 817946 . G A 759 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=11.86;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:90:792,90,0 chrXII 817947 . C T 737 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=11.52;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:90:770,90,0 chrXII 817948 . A C 734 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=11.47;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:90:767,90,0 chrXII 817973 . T C 916 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=0;QD=14.09;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:949,105,0 chrXII 817998 . C A 1029 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=0;QD=17.74;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1062,108,0 chrXII 818004 . A G 988 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=18.30;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1021,108,0 chrXII 818018 . T C 662 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;QD=15.40;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:75:695,75,0 chrXII 818019 . G A 674 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=0;QD=15.32;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:75:707,75,0 chrXII 818041 . C T 1273 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=0;QD=16.32;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1306,141,0 chrXII 818046 . C A 1444 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.17;MQ0=0;QD=17.40;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1477,153,0 chrXII 818092 . A G 2334 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.39;MQ0=0;QD=18.82;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2367,249,0 chrXII 818185 . A G 769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=53;Dels=0.00;FS=3.565;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=3;MQRankSum=1.455;QD=14.51;ReadPosRankSum=1.663;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:84:802,84,0 chrXII 818207 . T A 133.13 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.19;MQ0=7;QD=3.70;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:18:166,18,0 chrXII 818228 . T C 193.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=23;Dels=0.00;FS=6.690;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.52;MQ0=8;MQRankSum=-1.240;QD=8.39;ReadPosRankSum=1.488;SB=-5.004e+01 GT:AD:DP:GQ:PL 1/1:1,21:23:24:226,24,0 chrXII 818235 . C T 244 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.13;MQ0=8;QD=9.38;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:30:277,30,0 chrXII 818285 . C T 1182 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=5;QD=17.91;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1215,123,0 chrXII 818366 . C T 842 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=0;QD=18.71;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:875,93,0 chrXII 818384 . G A 477 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.76;MQ0=0;QD=17.04;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:57:510,57,0 chrXII 818385 . G A 462 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.76;MQ0=0;QD=16.50;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:57:495,57,0 chrXII 818386 . T G 462 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.76;MQ0=0;QD=16.50;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:57:495,57,0 chrXII 818390 . A T 518 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=0;QD=17.86;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:57:551,57,0 chrXII 818447 . C T 150.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.28;MQ0=0;QD=12.51;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:21:183,21,0 chrXII 818452 . A G 155.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=0;QD=11.08;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,13:14:21:188,21,0 chrXII 818454 . A G 218.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=0;QD=15.57;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:27:251,27,0 chrXII 818534 . G T 45.97 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=1.84;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:9:78,9,0 chrXII 818542 . T C 65.51 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=2.85;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:12:98,12,0 chrXII 818562 . T C 72.51 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=5.58;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:105,12,0 chrXII 818576 . A G 88.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=0;QD=8.83;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:121,15,0 chrXII 818582 . A C 116.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=10.56;SB=-2.712e+01 GT:AD:DP:GQ:PL 1/1:0,10:11:18:149,18,0 chrXII 818588 . C A 93.26 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.98;MQ0=0;QD=6.66;SB=-5.920e+01 GT:AD:DP:GQ:PL 1/1:0,13:14:15:126,15,0 chrXII 818697 . A C 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=5.242;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;MQRankSum=1.020;QD=23.73;ReadPosRankSum=1.700;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2596,276,0 chrXII 818717 . A C 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=106;Dels=0.00;FS=10.780;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;MQRankSum=0.406;QD=21.73;ReadPosRankSum=2.310;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2336,252,0 chrXII 818735 . C A 1901 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=81.9754;MLEAC=2;MLEAF=1.00;MQ=44.08;MQ0=0;QD=20.66;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1934,216,0 chrXII 818791 . A C 792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=9.358;HaplotypeScore=27.6731;MLEAC=2;MLEAF=1.00;MQ=35.84;MQ0=0;MQRankSum=-1.212;QD=17.22;ReadPosRankSum=2.343;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:2,44:46:90:825,90,0 chrXII 818807 . T C 172.03 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=6.62;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:24:205,24,0 chrXII 818808 . C T 174.03 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=6.69;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:24:207,24,0 chrXII 818811 . G T 347 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=10.84;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:42:380,42,0 chrXII 818817 . G A 454 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.36;MQ0=0;QD=11.64;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:54:487,54,0 chrXII 818826 . T G 587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.655;DP=50;Dels=0.00;FS=11.684;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=-2.247;QD=11.74;ReadPosRankSum=2.655;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:3,47:50:69:620,69,0 chrXII 818837 . C T 1157 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=16.07;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1190,126,0 chrXII 818996 . C T 1641 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=14.65;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1674,177,0 chrXII 818997 . C A 1551 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=13.85;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1584,177,0 chrXII 819017 . T A 981 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;QD=9.25;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1014,111,0 chrXII 819018 . A G 1036 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;QD=9.77;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1069,114,0 chrXII 819032 . T G 879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;MQRankSum=-1.626;QD=6.71;ReadPosRankSum=1.706;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:912,102,0 chrXII 819035 . C T 852 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=33.51;MQ0=0;QD=6.50;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:96:885,96,0 chrXII 819079 . T C 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=180;Dels=0.00;FS=2.571;HaplotypeScore=4.8198;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=-1.129;QD=14.59;ReadPosRankSum=2.961;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:2660,285,0 chrXII 819099 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=20.03;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3665,376,0 chrXII 819282 . T A 5254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=224;Dels=0.00;FS=3.502;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=0.046;QD=23.46;ReadPosRankSum=1.701;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:5254,556,0 chrXII 819555 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.46;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3347,360,0 chrXII 819579 . T C 2664 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.18;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2697,294,0 chrXII 819611 . T G 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=133;Dels=0.00;FS=3.915;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=1.055;QD=19.54;ReadPosRankSum=1.706;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2632,279,0 chrXII 819643 . C T 3113 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.32;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3146,330,0 chrXII 819681 . A G 3669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=3.791;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=0.987;QD=23.08;ReadPosRankSum=1.622;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3669,387,0 chrXII 819713 . C T 3548.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=23.50;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3548,367,0 chrXII 819720 . A G 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=154;Dels=0.00;FS=7.495;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=0.317;QD=20.67;ReadPosRankSum=2.401;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:2,149:154:99:3216,345,0 chrXII 819742 . A G 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.514;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=0.898;QD=21.70;ReadPosRankSum=1.707;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3028,315,0 chrXII 819834 . C G 4503.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=20.66;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4503,489,0 chrXII 819836 . A G 4641.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=21.19;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4641,495,0 chrXII 819851 . A G 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=227;Dels=0.00;FS=5.235;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=0.465;QD=18.82;ReadPosRankSum=1.656;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4271,465,0 chrXII 819854 . T C 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=-0.307;QD=18.11;ReadPosRankSum=2.405;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:3985,435,0 chrXII 820286 . C T 3369.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.0581;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=21.46;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3369,343,0 chrXII 820297 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=18.49;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2770,297,0 chrXII 820477 . G A 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.411;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.860;QD=23.18;ReadPosRankSum=1.250;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3547,343,0 chrXII 820505 . G T 3292.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.24;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3292,337,0 chrXII 820615 . G A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.68;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3825,397,0 chrXII 820636 . T C 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.6643;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=1.158;QD=22.47;ReadPosRankSum=1.688;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3527,390,0 chrXII 820804 . A G 4599.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.3746;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.35;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4599,492,0 chrXII 820873 . A G 3336.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=24.00;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3336,351,0 chrXII 820890 . A G 3487.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.0311;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.09;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3487,366,0 chrXII 821080 . T C 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=3.118;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.655;QD=24.26;ReadPosRankSum=1.626;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:4003,432,0 chrXII 821128 . A G 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=161;Dels=0.00;FS=2.916;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.099;QD=22.97;ReadPosRankSum=2.373;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3698,393,0 chrXII 821267 . G A 3071 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.02;FS=0.000;HaplotypeScore=5.9670;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=18.84;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3104,327,0 chrXII 821269 . A G 2931 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.755;DP=160;Dels=0.00;FS=10.836;HaplotypeScore=6.7557;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=-0.390;QD=18.32;ReadPosRankSum=3.706;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:5,154:160:99:2964,321,0 chrXII 821272 . A G 3049 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.658;DP=167;Dels=0.00;FS=11.242;HaplotypeScore=17.6196;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;MQRankSum=-1.958;QD=18.26;ReadPosRankSum=3.798;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:5,162:167:99:3082,333,0 chrXII 821362 . A G 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.170;DP=162;Dels=0.00;FS=7.360;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.117;QD=23.34;ReadPosRankSum=2.341;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:2,156:162:99:3781,408,0 chrXII 821461 . A G 2926 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.36;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2959,309,0 chrXII 821518 . A G 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=123;Dels=0.00;FS=5.819;HaplotypeScore=7.2030;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=1.402;QD=19.12;ReadPosRankSum=2.927;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2385,255,0 chrXII 821542 . C T 2477 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.35;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2510,258,0 chrXII 821845 . A G 3844.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.73;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3844,417,0 chrXII 821896 . A C 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.620;QD=23.22;ReadPosRankSum=1.620;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2936,312,0 chrXII 822213 . A G 1974 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.42;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2007,213,0 chrXII 822304 . T A 2663 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.90;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2696,270,0 chrXII 822379 . C T 3583.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3583,378,0 chrXII 822430 . A G 3497.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.86;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3497,369,0 chrXII 822539 . A G 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=176;Dels=0.00;FS=2.863;HaplotypeScore=13.2727;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.551;QD=21.94;ReadPosRankSum=2.407;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3861,408,0 chrXII 822608 . A T 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.175;DP=152;Dels=0.00;FS=2.824;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-2.256;QD=23.18;ReadPosRankSum=2.353;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3524,366,0 chrXII 822648 . C T 3403.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.31;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3403,352,0 chrXII 822750 . C T 3204.99 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.74;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3238,334,0 chrXII 822768 . A C 3408.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=24.00;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3408,366,0 chrXII 822798 . G A 2494 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=22.67;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2527,261,0 chrXII 822847 . G A 2672 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=22.08;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2705,291,0 chrXII 822853 . A G 2604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=125;Dels=0.00;FS=3.452;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.112;QD=20.83;ReadPosRankSum=1.648;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2637,288,0 chrXII 822903 . T A 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.195;DP=135;Dels=0.00;FS=3.037;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.392;QD=20.77;ReadPosRankSum=2.286;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2837,297,0 chrXII 823022 . G A 2418 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=21.59;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2451,252,0 chrXII 823029 . A G 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.6899;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-1.423;QD=20.96;ReadPosRankSum=1.577;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2381,258,0 chrXII 823121 . C G 3218.91 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.6671;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=23.16;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3252,345,0 chrXII 823217 . G A 1890 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=21.98;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1923,204,0 chrXII 823244 . T C 1485 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=22.50;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,63:66:99:1518,159,0 chrXII 823320 . T C 1262 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=21.03;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1295,135,0 chrXII 823325 . T C 1325 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=21.37;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1358,144,0 chrXII 823338 . G A 1425 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=21.27;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1458,153,0 chrXII 823394 . C T 1046 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=20.12;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1079,111,0 chrXII 823767 . A G 2668 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.25;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2701,288,0 chrXII 824008 . T C 4383.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.36;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4383,474,0 chrXII 824191 . T C 4292.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.90;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4292,465,0 chrXII 824212 . C T 4523.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.65;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4523,469,0 chrXII 824233 . C T 4661.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.19;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4661,490,0 chrXII 824361 . A G 2490 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.61;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2523,261,0 chrXII 824406 . A G 3596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=1.057;QD=23.20;ReadPosRankSum=1.710;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3596,375,0 chrXII 824599 . C T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.74;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3655,384,0 chrXII 824977 . G A 5856.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.52;SB=-2.937e+03 GT:AD:DP:GQ:PL 1/1:0,257:260:99:5856,607,0 chrXII 825004 . G T 5742.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=8.8042;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.79;SB=-3.251e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:5742,601,0 chrXII 825429 . A G 4598.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.70;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4598,478,0 chrXII 825457 . G A 4009.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.78;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4009,412,0 chrXII 825694 . A G 3700.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.42;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3700,396,0 chrXII 826153 . C T 3904.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.2111;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.96;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3904,409,0 chrXII 826454 . T C 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=107;Dels=0.00;FS=5.339;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.065;QD=23.41;ReadPosRankSum=1.699;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2538,267,0 chrXII 826674 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3266,342,0 chrXII 827510 . C A 6538.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=21.7248;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.27;SB=-3.387e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:6538,679,0 chrXII 827781 . T C 4286.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=14.6648;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.31;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,218:222:99:4286,465,0 chrXII 827901 . G A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.3253;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.95;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3589,378,0 chrXII 828218 . G A 4866.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.9156;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.53;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:4866,505,0 chrXII 828244 . T C 5052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=242;Dels=0.00;FS=13.671;HaplotypeScore=7.2534;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.717;QD=20.88;ReadPosRankSum=2.954;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:3,236:242:99:5052,532,0 chrXII 828578 . G T 4051.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.14;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4051,424,0 chrXII 828622 . T G 4247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.282;DP=201;Dels=0.00;FS=15.112;HaplotypeScore=15.3040;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.082;QD=21.13;ReadPosRankSum=3.389;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:4,192:201:99:4247,462,0 chrXII 828754 . T C 5036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=18.5692;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.408;QD=24.69;ReadPosRankSum=1.698;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:5036,526,0 chrXII 828903 . C T 6140.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=14.2763;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.89;SB=-3.189e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:6140,640,0 chrXII 829035 . C T 6637.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=23.5347;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.98;SB=-3.884e+03 GT:AD:DP:GQ:PL 1/1:0,302:302:99:6637,706,0 chrXII 829269 . C T 2868 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=17.28;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,163:166:99:2901,297,0 chrXII 829427 . G A 643 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=17.86;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:72:676,72,0 chrXII 829435 . G A 826 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=16.86;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:859,93,0 chrXII 829486 . T C 2939 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=24.70;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2972,321,0 chrXII 829513 . C T 3919.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=26.30;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3919,412,0 chrXII 829636 . A G 5111.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=24.11;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:5111,549,0 chrXII 829693 . G T 6050.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=23.82;SB=-2.844e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6050,631,0 chrXII 829708 . C T 5968.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=14.3583;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.62;SB=-3.166e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:5968,634,0 chrXII 829807 . C A 6044.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=5.3052;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.81;SB=-3.026e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:6044,622,0 chrXII 829810 . A C 5901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.534;QD=21.86;ReadPosRankSum=1.719;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:1,268:270:99:5901,619,0 chrXII 829917 . G C 4987.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=20.4136;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.87;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,235:239:99:4987,540,0 chrXII 830371 . G A 3963.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=21.66;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3963,420,0 chrXII 830378 . A C 3929.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.24;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3929,412,0 chrXII 830507 . C A 3751.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;QD=21.56;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3751,396,0 chrXII 830508 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;QD=21.69;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3774,396,0 chrXII 830520 . A G 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=178;Dels=0.00;FS=7.311;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;MQRankSum=-1.070;QD=19.16;ReadPosRankSum=2.367;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3410,378,0 chrXII 830532 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.3913;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=19.51;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3648,390,0 chrXII 830647 . G T 3293.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=20.33;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3293,339,0 chrXII 830675 . G A 2987 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=37.36;MQ0=0;QD=17.37;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3020,330,0 chrXII 830678 . G T 3065 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=17.41;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3098,324,0 chrXII 830689 . T A 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.0594;MLEAC=2;MLEAF=1.00;MQ=37.64;MQ0=0;MQRankSum=-1.256;QD=16.35;ReadPosRankSum=1.256;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3009,330,0 chrXII 830721 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;QD=16.59;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:3334,351,0 chrXII 830731 . A G 3039 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=15.75;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:3072,336,0 chrXII 830791 . C T 3636.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=21.90;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3636,370,0 chrXII 830821 . C T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=24.33;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3771,394,0 chrXII 830945 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=21.09;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3006,309,0 chrXII 830954 . A C 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=3.019;HaplotypeScore=3.4612;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;MQRankSum=-0.208;QD=20.40;ReadPosRankSum=2.395;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2808,306,0 chrXII 830981 . T C 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=179;Dels=0.00;FS=3.033;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-0.324;QD=19.63;ReadPosRankSum=2.422;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3513,372,0 chrXII 831241 . G A 3810.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.23;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3810,400,0 chrXII 831427 . C A 2829 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.82;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2862,297,0 chrXII 831670 . A T 3078 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.82;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3111,324,0 chrXII 831733 . G A 2688 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.1073;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.03;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2721,294,0 chrXII 831793 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=171;Dels=0.00;FS=7.342;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-1.758;QD=20.15;ReadPosRankSum=2.405;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:2,165:171:99:3445,366,0 chrXII 831805 . C T 3597.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.4553;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.44;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3597,375,0 chrXII 831871 . T C 4144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.304;QD=21.25;ReadPosRankSum=1.714;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4144,447,0 chrXII 832054 . A C 4939.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=16.0308;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.30;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4939,520,0 chrXII 832281 . G A 3692.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.3396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.46;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3692,382,0 chrXII 832834 . C T 3900.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3900,406,0 chrXII 833260 . T C 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=183;Dels=0.00;FS=7.666;HaplotypeScore=13.4743;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.745;QD=20.38;ReadPosRankSum=2.396;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3729,396,0 chrXII 833326 . C T 4016.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.5870;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.71;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4016,415,0 chrXII 833446 . A G 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.221;QD=22.97;ReadPosRankSum=1.709;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3422,363,0 chrXII 833500 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9201;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.97;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3332,360,0 chrXII 833647 . A G 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.911;QD=22.21;ReadPosRankSum=1.629;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3032,321,0 chrXII 833760 . T G 1721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=3.714;HaplotypeScore=4.5454;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.177;QD=13.55;ReadPosRankSum=1.650;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:1754,192,0 chrXII 833774 . C T 2034 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=17.69;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2067,213,0 chrXII 833859 . A G 2536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.756;DP=128;Dels=0.00;FS=10.439;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;MQRankSum=-0.047;QD=19.81;ReadPosRankSum=2.882;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:2569,279,0 chrXII 833865 . G A 2643 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=20.98;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2676,276,0 chrXII 833890 . C A 2452 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=19.77;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2485,255,0 chrXII 833930 . T C 2108 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=19.34;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2141,234,0 chrXII 833983 . A T 2443 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=23.27;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2476,255,0 chrXII 834031 . G A 2153 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=22.20;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2186,225,0 chrXII 834053 . A G 1934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=94;Dels=0.00;FS=2.898;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;MQRankSum=1.035;QD=20.57;ReadPosRankSum=2.397;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1967,216,0 chrXII 834075 . G A 2323 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=21.92;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2356,246,0 chrXII 834108 . A G 1812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=109;Dels=0.02;FS=2.778;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;MQRankSum=-1.070;QD=16.62;ReadPosRankSum=2.404;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:1845,198,0 chrXII 834111 . A G 1757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=110;Dels=0.00;FS=5.542;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;MQRankSum=-1.064;QD=15.97;ReadPosRankSum=2.936;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:3,107:110:99:1790,195,0 chrXII 834217 . A C 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=4.433;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.139;QD=23.14;ReadPosRankSum=1.701;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2601,273,0 chrXII 834281 . G A 2530 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.74;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2563,273,0 chrXII 834286 . G A 2639 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=20.94;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2672,279,0 chrXII 834387 . T C 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=141;Dels=0.00;FS=2.978;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.514;QD=24.86;ReadPosRankSum=2.310;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3505,375,0 chrXII 834416 . G T 3614.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.92;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3614,370,0 chrXII 834552 . A G 5634.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=16.9944;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.50;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:5634,598,0 chrXII 834726 . C G 8102.01 PASS AC=2;AF=1.00;AN=2;DP=354;Dels=0.00;FS=0.000;HaplotypeScore=15.1304;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=22.89;SB=-4.098e+03 GT:AD:DP:GQ:PL 1/1:0,352:354:99:8102,880,0 chrXII 835059 . G A 5420.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.77;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5420,550,0 chrXII 835110 . T C 5671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=228;Dels=0.00;FS=3.186;HaplotypeScore=9.7846;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.404;QD=24.87;ReadPosRankSum=1.717;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:5671,610,0 chrXII 835257 . G A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=24.30;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4204,436,0 chrXII 835277 . A G 3798.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.6971;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.34;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3798,402,0 chrXII 835393 . A C 4299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=201;Dels=0.00;FS=12.955;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;MQRankSum=-1.635;QD=21.39;ReadPosRankSum=2.945;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:4299,459,0 chrXII 835400 . G A 4337.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=21.79;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4337,445,0 chrXII 835412 . C T 3878.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=20.41;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3878,405,0 chrXII 835461 . A G 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.545;QD=19.00;ReadPosRankSum=1.694;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3458,372,0 chrXII 835495 . C T 4277.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.4866;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.99;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4277,442,0 chrXII 835689 . C T 3578.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.0153;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=18.64;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3578,387,0 chrXII 835692 . G A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.6493;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=20.01;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3681,382,0 chrXII 835791 . T C 2878 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.2908;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.58;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2911,312,0 chrXII 835800 . G T 2643 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=18.61;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2676,279,0 chrXII 837118 . T C 5806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.642;QD=24.19;ReadPosRankSum=2.429;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:2,238:240:99:5806,619,0 chrXII 837460 . A G 781 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=19.52;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:814,87,0 chrXII 837471 . C T 655 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=21.83;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:72:688,72,0 chrXII 837482 . G A 448 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=18.67;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:51:481,51,0 chrXII 837529 . A G 48.07 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;DP=16;Dels=0.00;FS=7.270;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.12;MQ0=0;MQRankSum=-1.302;QD=3.00;ReadPosRankSum=-1.519;SB=-2.407e+01 GT:AD:DP:GQ:PL 0/1:1,15:16:15:78,0,15 chrXII 837543 . G A 585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DP=46;Dels=0.00;FS=11.761;HaplotypeScore=8.1894;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-1.347;QD=12.72;ReadPosRankSum=-1.655;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:1,44:46:66:618,66,0 chrXII 837595 . C T 2156 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.22;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,86:89:99:2189,231,0 chrXII 837919 . A G 1272 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.13;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1305,138,0 chrXII 839568 . A G 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.072;DP=145;Dels=0.00;FS=22.654;HaplotypeScore=5.0543;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=1.121;QD=21.06;ReadPosRankSum=4.132;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:6,137:145:99:3086,327,0 chrXII 839573 . C G 2893 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.66;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2926,324,0 chrXII 839654 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.5087;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.09;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3058,327,0 chrXII 839722 . A G 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.338;QD=22.26;ReadPosRankSum=1.667;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3584,378,0 chrXII 839783 . C G 3675.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.1026;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=24.02;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3675,390,0 chrXII 839881 . G A 164.06 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=101.5899;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=1.51;SB=-8.281e+01 GT:AD:DP:GQ:PL 1/1:0,11:109:21:197,21,0 chrXII 840068 . A G 3651.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=176;Dels=0.00;FS=13.948;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-0.331;QD=20.74;ReadPosRankSum=2.960;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:3651,402,0 chrXII 840073 . T C 3656.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=181;Dels=0.00;FS=2.639;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-0.432;QD=20.20;ReadPosRankSum=2.367;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:3656,387,0 chrXII 840076 . A T 3701.01 SnpCluster AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=20.34;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3701,379,0 chrXII 840079 . C T 3669.01 SnpCluster AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=19.73;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3669,384,0 chrXII 840217 . T C 3375.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4216;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.96;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3375,357,0 chrXII 840287 . T C 4613.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=24.03;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4613,487,0 chrXII 840577 . T C 3929.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.95;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3929,420,0 chrXII 840605 . A G 3915.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.24;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3915,414,0 chrXII 840682 . T C 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=152;Dels=0.00;FS=3.040;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.212;QD=23.56;ReadPosRankSum=2.367;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:3581,378,0 chrXII 840839 . T C 2065 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.11;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2098,231,0 chrXII 841073 . A G 3149 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.41;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3182,348,0 chrXII 841354 . C T 4144.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.55;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4144,421,0 chrXII 841667 . T A 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=160;Dels=0.00;FS=3.590;HaplotypeScore=11.4591;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.650;QD=23.02;ReadPosRankSum=1.645;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3683,393,0 chrXII 842049 . G A 3518.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.45;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3518,361,0 chrXII 842134 . G A 3029 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.48;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3062,312,0 chrXII 842368 . T A 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=6.291;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.460;QD=24.05;ReadPosRankSum=2.407;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2799,288,0 chrXII 842401 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.83;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3133,321,0 chrXII 842770 . G A 3137 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3170,339,0 chrXII 842955 . C G 4565.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.6423;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.15;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4565,481,0 chrXII 843392 . C G 5551.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=23.42;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5551,601,0 chrXII 843400 . T C 5792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=251;Dels=0.00;FS=5.794;HaplotypeScore=8.8000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.540;QD=23.08;ReadPosRankSum=2.932;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:3,248:251:99:5792,633,0 chrXII 843685 . A G 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.637;DP=159;Dels=0.00;FS=2.514;HaplotypeScore=18.8691;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.382;QD=21.77;ReadPosRankSum=2.956;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:3,155:159:99:3461,369,0 chrXII 843970 . T G 2552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=125;Dels=0.00;FS=8.012;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.639;QD=20.42;ReadPosRankSum=2.371;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2585,279,0 chrXII 844038 . T C 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=154;Dels=0.00;FS=12.547;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.073;QD=18.53;ReadPosRankSum=2.352;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:2,149:154:99:2887,300,0 chrXII 844191 . C A 2693 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2726,288,0 chrXII 844293 . T C 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.017;QD=23.15;ReadPosRankSum=2.392;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2973,324,0 chrXII 844425 . C T 5289.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.3462;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.93;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:5289,535,0 chrXII 844641 . T C 5122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=226;Dels=0.00;FS=6.810;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.704;QD=22.66;ReadPosRankSum=2.362;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:2,223:226:99:5122,549,0 chrXII 845436 . T C 4012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=160;Dels=0.00;FS=2.796;HaplotypeScore=10.8403;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=2.311;QD=25.08;ReadPosRankSum=2.342;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:4012,429,0 chrXII 846071 . C T 2030 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.51;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2063,213,0 chrXII 846079 . G A 2207 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.29;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2240,228,0 chrXII 846312 . T C 4737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.831;QD=23.69;ReadPosRankSum=1.697;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4737,499,0 chrXII 846354 . C A 5546.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.11;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:5546,592,0 chrXII 846636 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=172;Dels=0.00;FS=2.563;HaplotypeScore=12.5788;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.236;QD=22.74;ReadPosRankSum=2.421;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3911,429,0 chrXII 846812 . T C 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=3.083;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.693;QD=24.54;ReadPosRankSum=1.674;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2978,312,0 chrXII 847703 . A G 4597.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.2069;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.10;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4597,495,0 chrXII 847815 . C G 3468.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=17.8807;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.81;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3468,372,0 chrXII 848108 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4760;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.55;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3391,351,0 chrXII 848195 . A T 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=152;Dels=0.00;FS=3.185;HaplotypeScore=11.3984;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.459;QD=23.08;ReadPosRankSum=1.687;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3508,372,0 chrXII 848443 . C T 4080.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=25.19;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4080,424,0 chrXII 848719 . C T 4725.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.1805;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.00;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4725,487,0 chrXII 848908 . C G 3625.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3625,390,0 chrXII 849017 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5609;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.636;QD=23.09;ReadPosRankSum=1.707;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3266,345,0 chrXII 849160 . C A 2454 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2487,258,0 chrXII 849445 . T G 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.478;QD=23.61;ReadPosRankSum=1.666;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2536,267,0 chrXII 849491 . T C 2728 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.82;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2761,288,0 chrXII 849515 . T C 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=123;Dels=0.00;FS=4.331;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.732;QD=22.60;ReadPosRankSum=1.704;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2813,297,0 chrXII 849610 . C G 2764 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.66;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2797,303,0 chrXII 849651 . T C 483.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;DP=103;Dels=0.00;FS=4.394;HaplotypeScore=193.7143;MLEAC=1;MLEAF=0.500;MQ=56.55;MQ0=0;MQRankSum=2.073;QD=4.69;ReadPosRankSum=-4.529;SB=-1.630e+02 GT:AD:DP:GQ:PL 0/1:76,25:103:99:513,0,105 chrXII 849654 . T C 230.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.544;DP=107;Dels=0.00;FS=3.116;HaplotypeScore=73.9487;MLEAC=1;MLEAF=0.500;MQ=56.69;MQ0=0;MQRankSum=-0.728;QD=2.15;ReadPosRankSum=4.686;SB=-9.390e+02 GT:AD:DP:GQ:PL 0/1:24,83:107:99:260,0,429 chrXII 850042 . C T 4321.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.23;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4321,442,0 chrXII 850147 . A G 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=3.108;HaplotypeScore=4.7776;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.808;QD=25.49;ReadPosRankSum=1.706;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3441,363,0 chrXII 850372 . C T 4848.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.24;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4848,508,0 chrXII 850897 . A G 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=3.508;HaplotypeScore=8.7018;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.386;QD=25.11;ReadPosRankSum=1.666;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3967,426,0 chrXII 851089 . A G 4379.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.93;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4379,460,0 chrXII 851098 . G A 4164.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.39;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4164,433,0 chrXII 851170 . T C 4373.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.5846;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.20;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4373,463,0 chrXII 851231 . C T 4003.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.29;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4003,423,0 chrXII 851512 . T A 2888 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.68;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2921,295,0 chrXII 852007 . A G 2823 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.6684;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.77;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2856,306,0 chrXII 852057 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1845,192,0 chrXII 852274 . C T 2144 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.52;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2177,228,0 chrXII 852843 . A C 4575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.7323;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.482;QD=23.46;ReadPosRankSum=1.696;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4575,487,0 chrXII 853103 . G A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.09;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3373,357,0 chrXII 853556 . A G 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.243;QD=23.96;ReadPosRankSum=1.702;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2765,294,0 chrXII 854278 . T C 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=5.262;HaplotypeScore=6.5600;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.521;QD=24.98;ReadPosRankSum=1.653;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3297,348,0 chrXII 854473 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0640;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.98;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3103,318,0 chrXII 854761 . C T 3723.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.02;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3723,393,0 chrXII 855018 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3340;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.035;QD=21.44;ReadPosRankSum=1.667;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3409,372,0 chrXII 855075 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.50;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3488,363,0 chrXII 855144 . T G 4348.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.38;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4348,457,0 chrXII 855154 . T C 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.559;QD=19.80;ReadPosRankSum=1.714;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:3841,408,0 chrXII 855358 . T C 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=188;Dels=0.01;FS=4.748;HaplotypeScore=22.2052;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-0.552;QD=20.80;ReadPosRankSum=1.713;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:3910,414,0 chrXII 855391 . G A 3691.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.5779;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.21;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3691,384,0 chrXII 855421 . A G 4099.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=23.69;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4099,438,0 chrXII 855464 . T C 4243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=3.370;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=1.634;QD=23.97;ReadPosRankSum=1.693;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4243,448,0 chrXII 855542 . T C 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=3.621;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=1.249;QD=20.84;ReadPosRankSum=1.647;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2596,273,0 chrXII 855577 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.60;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2560,258,0 chrXII 855695 . C A 1984 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=18.37;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2017,216,0 chrXII 855718 . G C 1832 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=18.51;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1865,204,0 chrXII 855772 . C T 1937 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.81;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1970,207,0 chrXII 855913 . G A 2668 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.1946;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=25.17;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2701,279,0 chrXII 855990 . A G 3537.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.67;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3537,378,0 chrXII 856042 . T A 4240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.4790;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.687;QD=23.69;ReadPosRankSum=1.693;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4240,439,0 chrXII 856365 . T C 62.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.365;DP=208;Dels=0.00;FS=2.889;HaplotypeScore=186.5410;MLEAC=1;MLEAF=0.500;MQ=49.88;MQ0=1;MQRankSum=2.692;QD=0.30;ReadPosRankSum=-4.968;SB=-1.290e+02 GT:AD:DP:GQ:PL 0/1:197,9:208:41:92,0,41 chrXII 856366 . T C 53.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;DP=209;Dels=0.00;FS=4.649;HaplotypeScore=185.6976;MLEAC=1;MLEAF=0.500;MQ=49.93;MQ0=1;MQRankSum=-1.010;QD=0.25;ReadPosRankSum=5.275;SB=-2.128e+03 GT:AD:DP:GQ:PL 0/1:10,199:209:69:83,0,69 chrXII 856379 . G A 3534.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=1;QD=18.03;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3534,364,0 chrXII 856399 . A G 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=182;Dels=0.00;FS=2.923;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=1;MQRankSum=0.129;QD=17.44;ReadPosRankSum=2.422;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3207,342,0 chrXII 856685 . A T 2935 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.07;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2968,315,0 chrXII 857000 . T A 4379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.458;QD=25.17;ReadPosRankSum=1.712;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4379,448,0 chrXII 857019 . C T 4279.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.64;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4279,445,0 chrXII 857477 . T C 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.335;QD=25.21;ReadPosRankSum=1.696;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2453,261,0 chrXII 857630 . G C 3387.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.4771;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.69;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3387,354,0 chrXII 857745 . G A 3687.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.60;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3687,376,0 chrXII 857849 . T C 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.105;QD=22.70;ReadPosRankSum=1.653;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3052,324,0 chrXII 857872 . A G 2950 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.52;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2983,324,0 chrXII 858229 . T C 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.912;QD=22.13;ReadPosRankSum=1.706;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,130:135:99:3021,327,0 chrXII 858373 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.01;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4034,415,0 chrXII 858605 . A G 4370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=3.373;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.677;QD=23.24;ReadPosRankSum=1.695;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4370,477,0 chrXII 858635 . A G 4273.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.73;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4273,468,0 chrXII 858802 . G A 4509.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.10;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4509,483,0 chrXII 858994 . C T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.7049;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.66;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3810,402,0 chrXII 859243 . T C 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=141;Dels=0.00;FS=4.058;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.658;QD=24.04;ReadPosRankSum=1.707;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3390,357,0 chrXII 859351 . G T 2428 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.87;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,106:111:99:2461,252,0 chrXII 859355 . C T 2431 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.90;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2464,252,0 chrXII 859419 . A G 2382 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.46;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2415,258,0 chrXII 859630 . A G 4351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=4.906;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.669;QD=26.05;ReadPosRankSum=1.711;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:1,163:167:99:4351,445,0 chrXII 860031 . G A 3085 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=18.93;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3118,330,0 chrXII 860038 . C T 3211.99 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.9563;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.01;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3245,342,0 chrXII 860133 . A G 5072.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.3140;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.59;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5072,555,0 chrXII 860211 . A G 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=3.746;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.810;QD=23.40;ReadPosRankSum=1.710;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3651,384,0 chrXII 860877 . A G 5023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=205;Dels=0.00;FS=3.781;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.520;QD=24.50;ReadPosRankSum=1.715;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:5023,526,0 chrXII 860959 . G A 5339.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.7155;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.83;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5339,541,0 chrXII 861302 . A G 3750.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=14.0139;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.87;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3750,402,0 chrXII 861675 . C T 2472 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=14.3762;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.97;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2505,261,0 chrXII 861841 . T C 3120 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3153,339,0 chrXII 862015 . G A 4412.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.07;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4412,451,0 chrXII 862237 . C G 3551.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.33;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3551,390,0 chrXII 862412 . T C 2679 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2712,297,0 chrXII 862519 . G C 2698 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.30;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2731,297,0 chrXII 862720 . G A 4094.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.7993;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.43;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4094,424,0 chrXII 863688 . C T 2660 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=61.2739;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.09;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2693,276,0 chrXII 864159 . C T 4660.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.0340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4660,487,0 chrXII 864291 . A G 4292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=186;Dels=0.00;FS=3.760;HaplotypeScore=17.9163;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.713;QD=23.08;ReadPosRankSum=1.694;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,182:186:99:4292,468,0 chrXII 864558 . A G 4827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.011;QD=24.50;ReadPosRankSum=1.679;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4827,514,0 chrXII 864606 . G A 4474.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.26;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4474,475,0 chrXII 864723 . G A 3353.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3353,354,0 chrXII 864768 . C T 3184 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3217,339,0 chrXII 864999 . G T 5099.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5099,541,0 chrXII 865086 . T C 5328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=17.7230;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.838;QD=22.87;ReadPosRankSum=1.500;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:2,228:233:99:5328,571,0 chrXII 865455 . T C 4243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.540;DP=183;Dels=0.00;FS=11.260;HaplotypeScore=13.3565;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.612;QD=23.19;ReadPosRankSum=3.754;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:5,178:183:99:4243,445,0 chrXII 865557 . G A 4715.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.2381;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.82;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4715,490,0 chrXII 865622 . C T 4664.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.8937;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.68;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4664,481,0 chrXII 865736 . A G 4756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.0116;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.009;QD=24.39;ReadPosRankSum=1.714;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4756,508,0 chrXII 865827 . C T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.5186;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.37;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3423,369,0 chrXII 865848 . G C 3086 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.86;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3119,345,0 chrXII 866082 . T C 2123 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2398;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.12;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2156,225,0 chrXII 866118 . G A 2091 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.49;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2124,225,0 chrXII 866256 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.51;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2478,258,0 chrXII 866286 . C A 2435 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=6.2542;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.55;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2468,270,0 chrXII 866559 . T C 5297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=229;Dels=0.00;FS=3.326;HaplotypeScore=14.8130;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.140;QD=23.13;ReadPosRankSum=1.717;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:5297,570,0 chrXII 866961 . G A 198.03 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-5.891e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:24:231,24,0 chrXII 867118 . A T 397 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=16.54;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:48:430,48,0 chrXII 868519 . T A 580 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:66:613,66,0 chrXII 868618 . G A 226.01 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-1.178e+02 GT:AD:DP:GQ:PL 1/1:0,10:11:27:259,27,0 chrXII 868667 . G A 730 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:78:763,78,0 chrXII 868737 . G A 778 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.61;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:87:811,87,0 chrXII 869190 . A G 4839.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.0349;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=26.44;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4839,511,0 chrXII 869308 . T A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.60;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3412,352,0 chrXII 869349 . G A 4575.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.99;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4575,490,0 chrXII 869370 . G A 4827.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.74;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4827,514,0 chrXII 870167 . G C 2625 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.5993;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.25;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2658,288,0 chrXII 870213 . G A 1896 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.75;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1929,204,0 chrXII 870228 . G A 2223 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.58;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2256,231,0 chrXII 870633 . A G 4772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.979;DP=197;Dels=0.00;FS=10.827;HaplotypeScore=4.3261;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.168;QD=24.22;ReadPosRankSum=2.275;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4772,499,0 chrXII 870645 . T A 4017.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.82;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4017,432,0 chrXII 870993 . G A 6343.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=23.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.90;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:0,272:277:99:6343,655,0 chrXII 871063 . C T 7783.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=26.0217;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.23;SB=-3.759e+03 GT:AD:DP:GQ:PL 1/1:0,334:335:99:7783,796,0 chrXII 871152 . C T 10365.01 filter AC=2;AF=1.00;AN=2;DP=454;Dels=0.00;FS=0.000;HaplotypeScore=31.6520;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.83;SB=-5.203e+03 GT:AD:DP:GQ:PL 1/1:0,454:454:99:10365,1096,0 chrXII 871257 . A G 6986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=359;Dels=0.00;FS=6.669;HaplotypeScore=18.1284;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.010;QD=19.46;ReadPosRankSum=2.408;SB=-4.313e+03 GT:AD:DP:GQ:PL 1/1:2,353:359:99:6986,757,0 chrXII 871484 . C T 7478.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=13.3983;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.80;SB=-4.262e+03 GT:AD:DP:GQ:PL 1/1:0,342:343:99:7478,784,0 chrXII 871504 . A G 7233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.101;DP=355;Dels=0.00;FS=6.292;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.508;QD=20.37;ReadPosRankSum=3.498;SB=-4.163e+03 GT:AD:DP:GQ:PL 1/1:6,346:355:99:7233,778,0 chrXII 871646 . G T 7750.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=26.9633;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.77;SB=-3.826e+03 GT:AD:DP:GQ:PL 1/1:0,325:326:99:7750,808,0 chrXII 871825 . A C 5682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=295;Dels=0.00;FS=9.962;HaplotypeScore=18.9162;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.369;QD=19.26;ReadPosRankSum=2.866;SB=-3.820e+03 GT:AD:DP:GQ:PL 1/1:3,289:295:99:5682,610,0 chrXII 872065 . C T 5705.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=16.9943;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.11;SB=-3.144e+03 GT:AD:DP:GQ:PL 1/1:0,253:258:99:5705,607,0 chrXII 872180 . T C 6697.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=15.4463;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.75;SB=-3.832e+03 GT:AD:DP:GQ:PL 1/1:0,282:282:99:6697,718,0 chrXII 872401 . A G 4283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.6884;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.862;QD=21.74;ReadPosRankSum=1.714;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4283,462,0 chrXII 872452 . C T 4080.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.54;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4080,424,0 chrXII 872707 . A G 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.661;QD=23.05;ReadPosRankSum=1.638;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3411,363,0 chrXII 873155 . C A 3915.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.93;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3915,406,0 chrXII 873300 . T C 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8664;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.775;QD=23.77;ReadPosRankSum=1.648;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:3004,312,0 chrXII 873725 . G C 1455 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3215;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1488,162,0 chrXII 873872 . C G 2730 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6530;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.33;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2763,306,0 chrXII 874247 . A G 5896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=271;Dels=0.00;FS=13.556;HaplotypeScore=15.8333;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-0.627;QD=21.76;ReadPosRankSum=3.332;SB=-3.197e+03 GT:AD:DP:GQ:PL 1/1:4,267:271:99:5896,622,0 chrXII 874259 . T A 5650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=247;Dels=0.00;FS=5.996;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.589;QD=22.87;ReadPosRankSum=2.939;SB=-3.234e+03 GT:AD:DP:GQ:PL 1/1:3,244:247:99:5650,577,0 chrXII 874343 . T C 5556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.414;DP=261;Dels=0.00;FS=16.003;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-0.730;QD=21.29;ReadPosRankSum=3.387;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:4,255:261:99:5556,583,0 chrXII 874373 . G A 4814.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=18.03;SB=-2.942e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:4814,508,0 chrXII 874379 . G A 4228.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=43.20;MQ0=0;QD=16.71;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:4228,447,0 chrXII 874397 . G A 4069.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=15.53;SB=-3.018e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:4069,424,0 chrXII 874427 . T C 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=260;Dels=0.00;FS=3.759;HaplotypeScore=4.0013;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;MQRankSum=-1.598;QD=11.03;ReadPosRankSum=1.665;SB=-2.889e+03 GT:AD:DP:GQ:PL 1/1:1,258:260:99:2902,324,0 chrXII 874433 . C T 3192 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=2.6386;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=11.91;SB=-2.978e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:3225,342,0 chrXII 874454 . C T 2943 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=10.5129;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=11.77;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:2976,324,0 chrXII 874715 . G A 4274.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.15;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4274,454,0 chrXII 874812 . A G 4711.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=15.0629;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.91;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4711,493,0 chrXII 875066 . G C 2169 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.6459;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.37;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2202,237,0 chrXII 875354 . A G 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=2.952;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-0.629;QD=23.21;ReadPosRankSum=2.393;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:3097,327,0 chrXII 875363 . T C 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=6.420;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=1.590;QD=22.82;ReadPosRankSum=2.370;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2840,300,0 chrXII 875555 . A G 1699 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=19.76;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1732,189,0 chrXII 875602 . T C 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=88;Dels=0.00;FS=4.260;HaplotypeScore=8.8853;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.945;QD=21.33;ReadPosRankSum=1.693;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1910,204,0 chrXII 876120 . G A 4330.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.4894;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.89;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4330,451,0 chrXII 876696 . C T 4424.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=17.84;SB=-3.115e+03 GT:AD:DP:GQ:PL 1/1:0,244:248:99:4424,457,0 chrXII 876714 . A G 4520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=256;Dels=0.00;FS=2.920;HaplotypeScore=10.1642;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.710;QD=17.66;ReadPosRankSum=2.372;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:2,252:256:99:4520,478,0 chrXII 877560 . T G 3549.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=239.6705;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;QD=20.28;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:99:3549,381,0 chrXII 877593 . C T 2481 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.9258;MLEAC=2;MLEAF=1.00;MQ=34.63;MQ0=0;QD=14.51;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2514,273,0 chrXII 877606 . C A 2254 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.9301;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=0;QD=12.88;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2287,240,0 chrXII 877607 . T A 2271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=177;Dels=0.00;FS=6.001;HaplotypeScore=1.9301;MLEAC=2;MLEAF=1.00;MQ=34.23;MQ0=0;MQRankSum=-1.153;QD=12.83;ReadPosRankSum=2.960;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:2304,240,0 chrXII 877625 . C T 2869 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=11.95;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:2902,306,0 chrXII 877647 . C T 3874.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=9.7314;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;QD=14.73;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:3874,397,0 chrXII 877736 . C T 5282.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=2.7577;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=18.03;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:5282,541,0 chrXII 877739 . T A 5307.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=2.8804;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=18.24;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,291:291:99:5307,538,0 chrXII 877782 . C T 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.084;DP=295;Dels=0.00;FS=5.819;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.33;MQ0=0;MQRankSum=1.060;QD=11.43;ReadPosRankSum=1.661;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:1,293:295:99:3372,342,0 chrXII 877787 . G A 3713.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=5.4765;MLEAC=2;MLEAF=1.00;MQ=38.71;MQ0=0;QD=12.02;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,306:309:99:3713,390,0 chrXII 877944 . C T 10357.01 filter AC=2;AF=1.00;AN=2;DP=432;Dels=0.00;FS=0.000;HaplotypeScore=19.3718;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=23.97;SB=-5.522e+03 GT:AD:DP:GQ:PL 1/1:0,427:432:99:10357,1058,0 chrXII 877967 . A T 9164.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.724;DP=409;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=1.334;QD=22.41;ReadPosRankSum=1.707;SB=-5.184e+03 GT:AD:DP:GQ:PL 1/1:1,408:409:99:9164,955,0 chrXII 878009 . T C 6051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.633;DP=346;Dels=0.00;FS=16.093;HaplotypeScore=29.9636;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=0.063;QD=17.49;ReadPosRankSum=3.783;SB=-4.031e+03 GT:AD:DP:GQ:PL 1/1:5,339:346:99:6051,657,0 chrXII 878188 . T C 8062.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=13.6261;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.36;SB=-3.631e+03 GT:AD:DP:GQ:PL 1/1:0,329:331:99:8062,865,0 chrXII 878238 . T C 8110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=325;Dels=0.00;FS=10.168;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.344;QD=24.95;ReadPosRankSum=2.941;SB=-3.915e+03 GT:AD:DP:GQ:PL 1/1:3,321:325:99:8110,868,0 chrXII 878842 . A G 4200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.328;QD=21.21;ReadPosRankSum=1.714;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4200,445,0 chrXII 878875 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.32;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3837,397,0 chrXII 879385 . A G 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.379;DP=154;Dels=0.00;FS=2.417;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.983;QD=18.94;ReadPosRankSum=3.266;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:4,150:154:99:2950,321,0 chrXII 879756 . C T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.69;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3571,370,0 chrXII 880035 . G A 5464.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=12.2342;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.35;SB=-3.062e+03 GT:AD:DP:GQ:PL 1/1:0,231:234:99:5464,553,0 chrXII 880251 . C A 3182 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.64;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3215,331,0 chrXII 880276 . G C 3617.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.0875;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.44;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3617,378,0 chrXII 880319 . C T 4006.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.03;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4006,423,0 chrXII 880898 . G A 3818.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.20;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3818,408,0 chrXII 880937 . C T 4065.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4065,421,0 chrXII 881541 . T C 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.035;DP=89;Dels=0.00;FS=7.140;HaplotypeScore=12.2742;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.966;QD=21.46;ReadPosRankSum=2.713;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:3,85:89:99:1943,181,0 chrXII 881580 . A G 1824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.866;QD=22.80;ReadPosRankSum=1.689;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1857,198,0 chrXII 881641 . C T 1035 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=21.12;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1068,111,0 chrXII 881642 . C T 1044 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=22.21;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1077,111,0 chrXII 881645 . C T 952 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=19.83;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:985,105,0 chrXII 881789 . C A 726 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:78:759,78,0 chrXII 881897 . C T 406 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.92;SB=-6.790e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:45:439,45,0 chrXII 882085 . A G 1445 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1478,153,0 chrXII 882430 . T C 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=159;Dels=0.00;FS=3.322;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.599;QD=22.04;ReadPosRankSum=1.710;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3505,372,0 chrXII 882523 . T C 4222.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.13;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4222,456,0 chrXII 882901 . G A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.4344;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3554,370,0 chrXII 882976 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=147;Dels=0.00;FS=9.216;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.993;QD=23.34;ReadPosRankSum=2.951;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:3,140:147:99:3431,357,0 chrXII 883249 . G A 4018.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.3874;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.20;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4018,418,0 chrXII 883429 . T C 4341.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.28;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4341,454,0 chrXII 883499 . A G 5706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=253;Dels=0.00;FS=6.988;HaplotypeScore=21.1900;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.657;QD=22.55;ReadPosRankSum=2.372;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:2,250:253:99:5706,613,0 chrXII 884518 . T C 3917.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.64;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3917,415,0 chrXII 884621 . A G 3155 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.38;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3188,348,0 chrXII 884656 . C T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.04;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3367,349,0 chrXII 884838 . T C 2851 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.22;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2884,306,0 chrXII 884976 . T C 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=165;Dels=0.00;FS=3.850;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=1.564;QD=24.02;ReadPosRankSum=1.711;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3963,426,0 chrXII 885037 . G C 3193 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=24.19;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3226,348,0 chrXII 885068 . C T 2269 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=99.3724;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=18.91;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,116:120:99:2302,246,0 chrXII 885146 . G T 3410.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.52;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3410,357,0 chrXII 885190 . A T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=24.86;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3680,390,0 chrXII 885216 . T C 3800.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=23.31;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3800,408,0 chrXII 885248 . T A 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=170;Dels=0.00;FS=2.699;HaplotypeScore=4.9606;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=1.308;QD=22.08;ReadPosRankSum=2.392;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3754,388,0 chrXII 885268 . T C 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.718;DP=181;Dels=0.00;FS=4.895;HaplotypeScore=13.6475;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=0.723;QD=20.90;ReadPosRankSum=3.778;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:5,176:181:99:3782,402,0 chrXII 885303 . A G 4158.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=22.85;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4158,435,0 chrXII 885401 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=2.966;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.432;QD=22.88;ReadPosRankSum=2.382;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3340,351,0 chrXII 885458 . C T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=20.88;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4135,429,0 chrXII 885476 . T C 4000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=4.365;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;MQRankSum=-1.000;QD=20.62;ReadPosRankSum=1.679;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4000,441,0 chrXII 885490 . C T 4203.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.0679;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=21.66;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4203,447,0 chrXII 885524 . A C 3475.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=17.73;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3475,387,0 chrXII 885536 . G A 3750.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=18.29;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:3750,393,0 chrXII 885677 . T G 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=3.270;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-0.251;QD=23.12;ReadPosRankSum=1.657;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3223,345,0 chrXII 885745 . T C 3842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=165;Dels=0.00;FS=7.867;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.067;QD=23.28;ReadPosRankSum=2.390;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3842,403,0 chrXII 886357 . A G 4747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=193;Dels=0.00;FS=6.849;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.330;QD=24.60;ReadPosRankSum=2.335;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4747,499,0 chrXII 886589 . T A 4322.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.5807;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.70;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4322,448,0 chrXII 886649 . A G 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.669;DP=138;Dels=0.00;FS=5.625;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.478;QD=22.07;ReadPosRankSum=2.934;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:3,134:138:99:3078,327,0 chrXII 886772 . A G 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=152;Dels=0.00;FS=2.996;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.496;QD=23.89;ReadPosRankSum=2.401;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3632,384,0 chrXII 886838 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=22.61;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3685,387,0 chrXII 886844 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=21.34;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3436,357,0 chrXII 886881 . G C 3486.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.87;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3486,366,0 chrXII 886902 . C T 3473.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.55;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3473,358,0 chrXII 887067 . T C 4281.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.6821;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=23.92;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4281,462,0 chrXII 887300 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.6567;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.78;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3659,379,0 chrXII 887306 . C T 3712.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3937;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.10;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3712,388,0 chrXII 887672 . T C 2238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=110;Dels=0.00;FS=3.345;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.187;QD=20.35;ReadPosRankSum=1.636;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2271,249,0 chrXII 887718 . T A 2405 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.12;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2438,258,0 chrXII 888137 . G A 3394.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3394,360,0 chrXII 888182 . A G 4012.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4012,426,0 chrXII 888260 . C T 3930.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.0660;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.12;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3930,403,0 chrXII 888362 . G C 4224.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.8695;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.42;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4224,450,0 chrXII 888653 . C T 1260 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=18.26;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1293,138,0 chrXII 888676 . T A 1137 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=16.72;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1170,123,0 chrXII 888705 . A G 752 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.468;DP=66;Dels=0.00;FS=6.929;HaplotypeScore=2.4485;MLEAC=2;MLEAF=1.00;MQ=37.65;MQ0=0;MQRankSum=-1.964;QD=11.39;ReadPosRankSum=1.777;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:84:785,84,0 chrXII 888713 . A G 649 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.728;DP=56;Dels=0.00;FS=9.088;HaplotypeScore=4.4378;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;MQRankSum=-2.318;QD=11.59;ReadPosRankSum=2.362;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:49:682,49,0 chrXII 888715 . T A 698 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;QD=12.69;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:81:731,81,0 chrXII 888722 . T A 635 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=33.49;MQ0=0;QD=11.14;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:72:668,72,0 chrXII 888738 . A T 851 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;QD=14.42;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:93:884,93,0 chrXII 888875 . A G 1626 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=25.02;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1659,177,0 chrXII 889106 . C T 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.760;DP=139;Dels=0.00;FS=5.198;HaplotypeScore=6.9320;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.436;QD=22.87;ReadPosRankSum=0.685;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3212,330,0 chrXII 889289 . C A 5249.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.3010;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.41;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5249,541,0 chrXII 889361 . C T 5331.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.03;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5331,556,0 chrXII 889388 . T C 4959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=233;Dels=0.00;FS=4.412;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-0.747;QD=21.28;ReadPosRankSum=1.598;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:4959,517,0 chrXII 889415 . T C 4248.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.42;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4248,448,0 chrXII 889427 . G A 4265.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=19.93;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4265,448,0 chrXII 889750 . G A 4526.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.3234;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4526,469,0 chrXII 890158 . A G 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=13.7298;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.039;QD=21.49;ReadPosRankSum=1.705;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2827,300,0 chrXII 890224 . A G 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.547;QD=23.05;ReadPosRankSum=1.709;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3504,369,0 chrXII 890351 . G C 2219 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2252,246,0 chrXII 890548 . C T 2486 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2519,267,0 chrXII 890591 . A G 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=163;Dels=0.00;FS=8.619;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.534;QD=24.91;ReadPosRankSum=2.404;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:4060,435,0 chrXII 891003 . T C 4783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=3.122;HaplotypeScore=15.2270;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.220;QD=24.16;ReadPosRankSum=1.714;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4783,508,0 chrXII 891197 . A G 4684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.4989;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.217;QD=24.02;ReadPosRankSum=1.714;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4684,502,0 chrXII 891299 . T G 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=3.296;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.991;QD=22.57;ReadPosRankSum=1.652;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3927,420,0 chrXII 891320 . A G 3004 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=156;Dels=0.00;FS=3.239;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;MQRankSum=-1.288;QD=19.26;ReadPosRankSum=1.665;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3037,327,0 chrXII 891323 . C T 3177 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=21.04;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3210,328,0 chrXII 891329 . T G 2907 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;MQRankSum=-0.153;QD=18.40;ReadPosRankSum=1.688;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2940,315,0 chrXII 891452 . C T 6816.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.43;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6816,709,0 chrXII 891875 . T C 3442.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.02;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3442,369,0 chrXII 891881 . G A 3502.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=19.24;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3502,366,0 chrXII 892172 . T A 4279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.566;QD=22.76;ReadPosRankSum=1.566;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4279,471,0 chrXII 892383 . A T 5645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.121;QD=23.72;ReadPosRankSum=1.703;SB=-3.160e+03 GT:AD:DP:GQ:PL 1/1:1,237:238:99:5645,601,0 chrXII 892436 . C T 5179.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.02;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5179,547,0 chrXII 892496 . A G 4828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.0301;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-0.418;QD=20.63;ReadPosRankSum=1.717;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:1,231:234:99:4828,522,0 chrXII 892508 . A G 4642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.422;DP=225;Dels=0.00;FS=8.542;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=1.755;QD=20.63;ReadPosRankSum=3.329;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:4,221:225:99:4642,504,0 chrXII 892643 . A G 5148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=210;Dels=0.00;FS=3.856;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.500;QD=24.51;ReadPosRankSum=1.682;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:5148,550,0 chrXII 893140 . T C 5442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=229;Dels=0.00;FS=2.925;HaplotypeScore=17.5728;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=1.915;QD=23.76;ReadPosRankSum=2.406;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:2,223:229:99:5442,574,0 chrXII 893372 . C T 6909.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=12.5275;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=21.32;SB=-3.956e+03 GT:AD:DP:GQ:PL 1/1:0,321:324:99:6909,715,0 chrXII 893382 . G A 6719.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=4.2332;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=20.80;SB=-4.162e+03 GT:AD:DP:GQ:PL 1/1:0,321:323:99:6719,682,0 chrXII 893396 . G A 6345.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=13.0027;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=19.83;SB=-4.180e+03 GT:AD:DP:GQ:PL 1/1:0,319:320:99:6345,664,0 chrXII 893440 . T A 5103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=10.8802;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;MQRankSum=-1.291;QD=18.03;ReadPosRankSum=1.634;SB=-3.605e+03 GT:AD:DP:GQ:PL 1/1:1,282:283:99:5103,541,0 chrXII 893453 . A T 4775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=268;Dels=0.00;FS=6.999;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=-0.820;QD=17.82;ReadPosRankSum=2.395;SB=-3.303e+03 GT:AD:DP:GQ:PL 1/1:2,266:268:99:4775,496,0 chrXII 893464 . T A 5129.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=10.2049;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=20.27;SB=-3.139e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5129,529,0 chrXII 893651 . T C 7000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=288;Dels=0.00;FS=7.002;HaplotypeScore=20.9384;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=0.099;QD=24.31;ReadPosRankSum=2.398;SB=-3.407e+03 GT:AD:DP:GQ:PL 1/1:2,284:288:99:7000,742,0 chrXII 893936 . A G 6112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=266;Dels=0.00;FS=5.436;HaplotypeScore=22.0283;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.928;QD=22.98;ReadPosRankSum=2.928;SB=-2.839e+03 GT:AD:DP:GQ:PL 1/1:3,261:266:99:6112,643,0 chrXII 894104 . T A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3510,367,0 chrXII 894452 . T C 3070 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.9978;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.41;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3103,327,0 chrXII 894680 . A G 3170 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3203,348,0 chrXII 894791 . C G 3675.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.97;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3675,396,0 chrXII 894953 . G A 4232.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=18.9124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4232,456,0 chrXII 895061 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.85;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3774,394,0 chrXII 895451 . C T 3522.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3522,375,0 chrXII 896189 . C T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.30;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3920,420,0 chrXII 896197 . A G 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=169;Dels=0.00;FS=3.141;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-0.994;QD=21.17;ReadPosRankSum=1.712;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3578,381,0 chrXII 897689 . T C 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=168;Dels=0.00;FS=9.388;HaplotypeScore=16.7202;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.978;QD=23.74;ReadPosRankSum=2.405;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3989,420,0 chrXII 897975 . A G 4224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.290;DP=181;Dels=0.00;FS=8.495;HaplotypeScore=15.5370;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=1.221;QD=23.34;ReadPosRankSum=0.566;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4224,426,0 chrXII 898044 . G A 3088 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.9259;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.71;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3121,336,0 chrXII 898095 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.49;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3477,363,0 chrXII 898119 . G A 3903.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.30;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3903,400,0 chrXII 898209 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.4804;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.58;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,165:170:99:3499,366,0 chrXII 898212 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.501;DP=164;Dels=0.00;FS=7.365;HaplotypeScore=6.8899;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-2.735;QD=20.90;ReadPosRankSum=3.319;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:5,159:164:99:3427,360,0 chrXII 898520 . C T 4620.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.6592;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.33;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4620,495,0 chrXII 899119 . A G 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=143;Dels=0.00;FS=2.684;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.340;QD=23.29;ReadPosRankSum=2.397;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:3330,348,0 chrXII 899154 . T C 3194 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=112.8689;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=22.98;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3227,336,0 chrXII 899303 . T C 3457.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=26.19;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3457,369,0 chrXII 899462 . A C 4320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=187;Dels=0.00;FS=3.468;HaplotypeScore=13.9754;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.366;QD=23.10;ReadPosRankSum=1.674;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,179:187:99:4320,462,0 chrXII 899557 . C A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.89;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3571,370,0 chrXII 899580 . C G 3109 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.59;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3142,336,0 chrXII 899679 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.6937;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.92;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3420,352,0 chrXII 899955 . T C 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.496;QD=22.98;ReadPosRankSum=1.706;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3089,330,0 chrXII 899979 . G A 3199 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.8680;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.53;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3232,342,0 chrXII 900280 . T C 4034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=175;Dels=0.00;FS=7.872;HaplotypeScore=14.9775;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.119;QD=23.05;ReadPosRankSum=2.393;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4034,438,0 chrXII 900312 . A G 4155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=173;Dels=0.00;FS=2.983;HaplotypeScore=11.0156;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=2.066;QD=24.02;ReadPosRankSum=2.350;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4155,444,0 chrXII 900812 . C G 5081.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.20;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:5081,541,0 chrXII 900885 . A G 4017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-1.466;QD=22.07;ReadPosRankSum=1.561;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4017,441,0 chrXII 901022 . C G 4688.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4688,504,0 chrXII 901058 . G T 4213.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.6948;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4213,436,0 chrXII 901179 . C T 3701.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.35;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3701,379,0 chrXII 901463 . C T 3485.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.12;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3485,375,0 chrXII 901473 . G A 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.234;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-0.902;QD=21.05;ReadPosRankSum=-0.487;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3536,342,0 chrXII 901592 . G A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.14;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3721,382,0 chrXII 901809 . G A 3777.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.46;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3777,385,0 chrXII 901826 . C T 3570.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.74;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3570,375,0 chrXII 902330 . T C 3385.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.26;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3385,357,0 chrXII 902591 . G A 4345.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.41;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4345,451,0 chrXII 902616 . T C 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=4.316;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.237;QD=24.47;ReadPosRankSum=1.687;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3817,402,0 chrXII 902761 . G A 4643.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.33;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4643,472,0 chrXII 902948 . C A 4230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.605;QD=24.88;ReadPosRankSum=1.261;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4230,436,0 chrXII 903349 . C T 4779.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.4117;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=21.53;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4779,490,0 chrXII 903374 . A T 4776.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=6.8723;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.77;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4776,493,0 chrXII 903720 . T A 4188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.9072;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.123;QD=22.16;ReadPosRankSum=2.385;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4188,450,0 chrXII 903762 . G C 4615.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.42;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4615,498,0 chrXII 903957 . T C 5358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=254;Dels=0.00;FS=6.753;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.348;QD=21.09;ReadPosRankSum=2.382;SB=-3.090e+03 GT:AD:DP:GQ:PL 1/1:2,252:254:99:5358,571,0 chrXII 904002 . C T 5919.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.51;SB=-3.395e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:5919,637,0 chrXII 904239 . T C 5500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=264;Dels=0.00;FS=3.024;HaplotypeScore=19.8132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.227;QD=20.83;ReadPosRankSum=2.356;SB=-3.355e+03 GT:AD:DP:GQ:PL 1/1:2,261:264:99:5500,592,0 chrXII 904696 . A G 2180 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2213,243,0 chrXII 904915 . G A 4179.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4179,444,0 chrXII 905352 . G A 3989.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.32;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3989,420,0 chrXII 905508 . C T 2855 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.84;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2888,294,0 chrXII 905606 . T A 2619 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.47;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2652,273,0 chrXII 905672 . T C 2179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.408;QD=21.36;ReadPosRankSum=1.698;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2212,234,0 chrXII 905691 . A G 2202 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.97;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2235,243,0 chrXII 905771 . A T 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.538;QD=22.97;ReadPosRankSum=1.643;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2697,279,0 chrXII 905887 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.68;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3265,334,0 chrXII 907076 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=4.676;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.399;QD=25.62;ReadPosRankSum=1.706;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3484,366,0 chrXII 907910 . C T 3691.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.3461;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.81;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3691,387,0 chrXII 908027 . G A 4200.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4200,439,0 chrXII 908778 . A G 2417 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.18;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2450,258,0 chrXII 908785 . T A 2182 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=17.18;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2215,228,0 chrXII 908930 . C T 4319.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8904;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.82;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4319,445,0 chrXII 909231 . T G 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.2252;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.289;QD=23.86;ReadPosRankSum=1.665;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3746,402,0 chrXII 909328 . T A 2695 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=24.50;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2728,279,0 chrXII 909986 . C A 3587.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.14;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3587,370,0 chrXII 910020 . G A 2288 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.61;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2321,237,0 chrXII 910090 . C T 1845 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.60;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1878,186,0 chrXII 910292 . A G 2389 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.2303;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.89;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2422,261,0 chrXII 910376 . G A 2760 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=26.54;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2793,282,0 chrXII 910431 . A G 2483 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.99;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2516,273,0 chrXII 910517 . T A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.60;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3911,400,0 chrXII 910650 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=4.033;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.642;QD=21.37;ReadPosRankSum=1.711;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3462,378,0 chrXII 910661 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.71;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3263,354,0 chrXII 910890 . T C 3690.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.2874;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.96;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3690,387,0 chrXII 911258 . T C 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=139;Dels=0.00;FS=7.052;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.999;QD=22.78;ReadPosRankSum=2.397;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3200,336,0 chrXII 911387 . G T 4329.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.32;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4329,448,0 chrXII 911501 . A G 3882.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.1477;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.97;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3882,420,0 chrXII 911510 . T C 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=0.063;QD=21.92;ReadPosRankSum=2.365;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3836,408,0 chrXII 912351 . C T 1844 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.95;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1877,189,0 chrXII 912364 . T C 1865 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.27;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1898,201,0 chrXII 912538 . C T 3000 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.64;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3033,312,0 chrXII 912718 . C G 3433.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.15;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3433,363,0 chrXII 912982 . G T 3166 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.69;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3199,342,0 chrXII 913000 . A G 3027 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.18;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3060,330,0 chrXII 913219 . C T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.9645;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.99;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3499,364,0 chrXII 913342 . G A 4637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.5795;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.889;QD=24.53;ReadPosRankSum=0.192;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4637,498,0 chrXII 913431 . A G 4950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=209;Dels=0.00;FS=8.513;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.587;QD=23.68;ReadPosRankSum=2.378;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:2,205:209:99:4950,520,0 chrXII 913684 . G A 6322.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=18.2168;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.04;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:6322,664,0 chrXII 913801 . G A 4337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.147;DP=239;Dels=0.00;FS=3.619;HaplotypeScore=15.8507;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.542;QD=18.15;ReadPosRankSum=0.402;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:1,236:239:99:4337,449,0 chrXII 913906 . A G 5552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=245;Dels=0.00;FS=5.795;HaplotypeScore=17.3687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.251;QD=22.66;ReadPosRankSum=2.963;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:3,241:245:99:5552,601,0 chrXII 913948 . G A 5033.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.3194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5033,529,0 chrXII 914086 . C T 3900.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.1498;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3900,409,0 chrXII 914428 . A G 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=140;Dels=0.00;FS=7.052;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.327;QD=22.06;ReadPosRankSum=2.397;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3122,342,0 chrXII 914928 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.37;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2580,273,0 chrXII 914959 . C G 2414 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.15;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2447,258,0 chrXII 914980 . G A 2077 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.41;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2110,216,0 chrXII 915065 . A G 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.141;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9245;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.324;QD=21.75;ReadPosRankSum=1.704;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2730,269,0 chrXII 915110 . C T 2189 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.85;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2222,237,0 chrXII 915461 . A T 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.131;DP=162;Dels=0.00;FS=2.983;HaplotypeScore=12.1387;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.493;QD=22.95;ReadPosRankSum=2.419;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3718,396,0 chrXII 916326 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=23.07;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3853,394,0 chrXII 916338 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.35;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3979,420,0 chrXII 917166 . G C 3359.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.65;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3359,360,0 chrXII 917305 . T C 1858 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.77;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1891,198,0 chrXII 917406 . C T 2065 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3122;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=19.48;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,101:106:99:2098,213,0 chrXII 917418 . C T 2047 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.55;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2080,216,0 chrXII 917691 . G A 2876 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.46;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2909,297,0 chrXII 917724 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.26;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3268,342,0 chrXII 918026 . T A 4115.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.7623;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.49;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4115,424,0 chrXII 918048 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=3.093;HaplotypeScore=5.8677;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-0.773;QD=23.81;ReadPosRankSum=1.689;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3785,396,0 chrXII 918216 . G A 3765.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4988;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.82;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3765,391,0 chrXII 918511 . T C 4282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=186;Dels=0.00;FS=9.539;HaplotypeScore=16.7089;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.842;QD=23.02;ReadPosRankSum=2.907;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:3,181:186:99:4282,451,0 chrXII 918570 . A G 4850.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.1711;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4850,511,0 chrXII 918735 . C T 4350.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4350,451,0 chrXII 918824 . A G 3693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.501;QD=24.14;ReadPosRankSum=1.709;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3693,396,0 chrXII 919081 . G A 1352 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.18;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1385,147,0 chrXII 919181 . T C 1089 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=15.56;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1122,123,0 chrXII 919261 . T G 899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.400;QD=23.05;ReadPosRankSum=1.644;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:99:932,99,0 chrXII 919424 . T C 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.155;QD=26.05;ReadPosRankSum=1.701;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2977,315,0 chrXII 919648 . C T 4972.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.3620;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.56;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4972,511,0 chrXII 920189 . G T 4148.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=25.93;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4148,439,0 chrXII 920406 . A G 4416.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=15.6318;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.30;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4416,466,0 chrXII 920445 . T C 4549.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=20.49;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4549,484,0 chrXII 920464 . G C 4446.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=19.25;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:4446,471,0 chrXII 920484 . T C 4178.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=18.57;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4178,447,0 chrXII 920502 . G A 4366.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=19.32;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4366,451,0 chrXII 920529 . A G 4115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=194;Dels=0.00;FS=2.751;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=1.082;QD=21.21;ReadPosRankSum=2.424;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4115,436,0 chrXII 920774 . C T 4028.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.0382;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.89;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4028,441,0 chrXII 920946 . C T 4407.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.8604;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.82;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4407,451,0 chrXII 921053 . A G 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=141;Dels=0.00;FS=2.771;HaplotypeScore=9.2973;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.699;QD=22.62;ReadPosRankSum=2.344;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:2,137:141:99:3223,339,0 chrXII 921081 . G A 3536.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.96;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3536,367,0 chrXII 921316 . G A 5120.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.70;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5120,552,0 chrXII 921404 . A C 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=174;Dels=0.00;FS=6.839;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.760;QD=21.16;ReadPosRankSum=2.379;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3682,390,0 chrXII 921420 . T C 3519.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=19.77;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3519,372,0 chrXII 921443 . G C 3399.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=18.57;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3399,366,0 chrXII 922026 . C A 3516.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=24.25;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3516,361,0 chrXII 922092 . A G 3048 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;QD=24.00;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3081,324,0 chrXII 922242 . C G 3775.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.02;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3775,399,0 chrXII 922517 . A G 4096.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.09;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4096,435,0 chrXII 922595 . G A 4740.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.6094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.43;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4740,490,0 chrXII 922882 . T C 4866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=215;Dels=0.00;FS=3.006;HaplotypeScore=16.8250;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.084;QD=22.63;ReadPosRankSum=2.404;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:4866,514,0 chrXII 923234 . T G 6502.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=11.2512;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=19.94;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,322:326:99:6502,700,0 chrXII 923248 . G A 6532.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=8.8612;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.07;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,308:310:99:6532,664,0 chrXII 923570 . G A 4541.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.41;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4541,498,0 chrXII 923659 . C G 3198 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.7205;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.36;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3231,348,0 chrXII 923885 . C T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.95;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4316,445,0 chrXII 924128 . A G 4868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.171;DP=205;Dels=0.00;FS=8.343;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.321;QD=23.75;ReadPosRankSum=2.413;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:2,201:205:99:4868,520,0 chrXII 924245 . A C 4414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.635;DP=194;Dels=0.00;FS=14.109;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.169;QD=22.75;ReadPosRankSum=2.921;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:3,187:194:99:4414,474,0 chrXII 924335 . T A 5291.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.1190;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.73;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5291,541,0 chrXII 924464 . G A 4236.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.06;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4236,439,0 chrXII 924492 . T C 4639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=223;Dels=0.00;FS=4.379;HaplotypeScore=10.9215;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-1.326;QD=20.80;ReadPosRankSum=1.716;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:1,221:223:99:4639,495,0 chrXII 924534 . C G 5018.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.9815;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.17;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5018,535,0 chrXII 924556 . T C 4510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=219;Dels=0.00;FS=8.861;HaplotypeScore=11.1884;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.036;QD=20.59;ReadPosRankSum=3.388;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:4,213:219:99:4510,486,0 chrXII 924908 . A T 7275.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=25.7056;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.09;SB=-3.784e+03 GT:AD:DP:GQ:PL 1/1:0,302:302:99:7275,739,0 chrXII 925036 . T C 3716.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.0227;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.31;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3716,408,0 chrXII 925356 . C T 2056 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2089,225,0 chrXII 925463 . C T 2058 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2091,216,0 chrXII 925665 . T C 2049 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2082,222,0 chrXII 925788 . T C 3503.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.5023;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.05;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3503,381,0 chrXII 925840 . G A 4190.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.6308;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.94;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4190,433,0 chrXII 925971 . A G 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=153;Dels=0.00;FS=6.587;HaplotypeScore=13.9491;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.627;QD=21.62;ReadPosRankSum=2.319;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:3308,354,0 chrXII 926420 . A G 5553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=242;Dels=0.00;FS=5.559;HaplotypeScore=6.5332;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-1.196;QD=22.95;ReadPosRankSum=2.971;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:3,238:242:99:5553,601,0 chrXII 926441 . T G 5051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.794;DP=239;Dels=0.00;FS=19.442;HaplotypeScore=7.9131;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-1.895;QD=21.13;ReadPosRankSum=3.781;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:5,232:239:99:5051,546,0 chrXII 926623 . C T 4622.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.82;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4622,490,0 chrXII 926814 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.773;DP=174;Dels=0.00;FS=5.343;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-1.029;QD=21.98;ReadPosRankSum=2.832;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:3,170:174:99:3824,408,0 chrXII 926836 . T C 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=157;Dels=0.00;FS=4.316;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.967;QD=21.48;ReadPosRankSum=1.710;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,153:157:99:3373,363,0 chrXII 927424 . G A 4934.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.2969;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.31;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4934,508,0 chrXII 927454 . T C 3926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=174;Dels=0.00;FS=4.552;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.677;QD=22.56;ReadPosRankSum=1.712;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3926,426,0 chrXII 927499 . A C 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.749;DP=151;Dels=0.00;FS=5.382;HaplotypeScore=15.9235;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.680;QD=21.87;ReadPosRankSum=2.871;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:3,145:151:99:3303,360,0 chrXII 927638 . C T 2296 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.92;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2329,240,0 chrXII 927914 . G A 1318 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1351,144,0 chrXII 928158 . G T 933 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=24.55;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:966,99,0 chrXII 928259 . A C 1113 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.80;MQ0=0;QD=23.68;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1146,120,0 chrXII 928263 . T C 1180 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=0;QD=24.08;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1213,126,0 chrXII 928273 . A G 1184 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;QD=21.93;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1217,132,0 chrXII 928276 . A T 1157 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=37.74;MQ0=0;QD=22.25;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1190,126,0 chrXII 928304 . T C 859 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=23.22;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:96:892,96,0 chrXII 928330 . C G 566 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=20.96;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,26:27:63:599,63,0 chrXII 928626 . C G 2227 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.02;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2260,237,0 chrXII 928982 . T C 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=3.305;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.682;QD=23.07;ReadPosRankSum=1.707;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3194,345,0 chrXII 929092 . C A 4986.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4986,514,0 chrXII 930728 . A G 3356.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.37;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3356,354,0 chrXII 932266 . G A 3353.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.45;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3353,348,0 chrXII 934129 . G A 2735 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2768,288,0 chrXII 934434 . C T 4456.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.1800;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.91;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4456,454,0 chrXII 935517 . C G 5400.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5400,568,0 chrXII 936343 . A C 3971.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3971,415,0 chrXII 936436 . C A 4319.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4319,451,0 chrXII 937855 . A G 6400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=273;Dels=0.00;FS=3.026;HaplotypeScore=21.3204;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.403;QD=23.44;ReadPosRankSum=2.431;SB=-3.486e+03 GT:AD:DP:GQ:PL 1/1:2,269:273:99:6400,705,0 chrXII 938134 . A G 4643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=17.5038;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.000;QD=20.91;ReadPosRankSum=2.869;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:3,219:222:99:4643,501,0 chrXII 940926 . G T 1466 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.94;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1499,156,0 chrXII 944231 . T C 106.52 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=4.55;MQ0=285;MQRankSum=0.978;QD=0.35;ReadPosRankSum=-0.109;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,232:306:6:136,0,6 chrXII 944267 . A G 47.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.054;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.51;MQ0=219;MQRankSum=1.203;QD=0.21;ReadPosRankSum=2.054;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:88,140:228:9:80,9,0 chrXII 944429 . C T 1031.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.352;DP=369;Dels=0.00;FS=29.337;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.62;MQ0=289;MQRankSum=-0.196;QD=2.79;ReadPosRankSum=-2.074;SB=-5.080e+02 GT:AD:DP:GQ:PL 0/1:80,289:369:99:1061,0,130 chrXII 944612 . A C 260.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.328;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.89;MQ0=192;MQRankSum=1.220;QD=1.02;ReadPosRankSum=-1.348;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,101:254:99:290,0,105 chrXII 947226 . G A 3874.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.6529;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=24.83;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3874,409,0 chrXII 947537 . A T 3935.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3935,409,0 chrXII 948612 . C T 3652.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.41;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3652,373,0 chrXII 950012 . A G 5641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=15.1909;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.010;QD=23.21;ReadPosRankSum=1.689;SB=-3.141e+03 GT:AD:DP:GQ:PL 1/1:1,239:243:99:5641,598,0 chrXII 950322 . A G 1529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.5538;MLEAC=2;MLEAF=1.00;MQ=39.44;MQ0=0;MQRankSum=-1.083;QD=13.65;ReadPosRankSum=1.701;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1562,171,0 chrXII 950340 . A T 99.26 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=79.4757;MLEAC=2;MLEAF=1.00;MQ=37.46;MQ0=0;QD=0.96;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:15:132,15,0 chrXII 950350 . T A 780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.190;DP=86;Dels=0.00;FS=26.292;HaplotypeScore=80.1968;MLEAC=2;MLEAF=1.00;MQ=35.47;MQ0=0;MQRankSum=1.816;QD=9.07;ReadPosRankSum=1.895;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:7,79:86:87:813,87,0 chrXII 950788 . T C 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-0.892;QD=19.90;ReadPosRankSum=1.697;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2003,210,0 chrXII 950793 . G A 1984 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.02;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=20.24;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2017,207,0 chrXII 950859 . C T 1865 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=16.80;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1898,207,0 chrXII 951032 . C T 3014 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.31;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3047,318,0 chrXII 951524 . T C 5265.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=5.5186;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.40;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5265,576,0 chrXII 951540 . A G 4928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.423;DP=234;Dels=0.00;FS=5.233;HaplotypeScore=13.5819;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-0.537;QD=21.06;ReadPosRankSum=3.400;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:4,229:234:99:4928,514,0 chrXII 951629 . A T 4129.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.9915;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.73;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4129,441,0 chrXII 952187 . C T 4950.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=22.2910;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.57;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4950,511,0 chrXII 952262 . G A 5223.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.2869;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.07;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5223,559,0 chrXII 952346 . G A 4355.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.9249;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4355,477,0 chrXII 952469 . C T 6509.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=18.1847;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.56;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:0,262:265:99:6509,679,0 chrXII 952975 . G A 4632.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=23.28;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4632,475,0 chrXII 952994 . C T 4071.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.49;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4071,415,0 chrXII 953059 . G T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.17;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3324,337,0 chrXII 953266 . C T 587 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.74;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,26:27:66:620,66,0 chrXII 953330 . T C 1885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.055;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.266;QD=24.80;ReadPosRankSum=2.384;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:2,73:76:99:1918,198,0 chrXII 953605 . A G 7186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=297;Dels=0.00;FS=3.024;HaplotypeScore=18.0624;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.425;QD=24.20;ReadPosRankSum=2.416;SB=-3.921e+03 GT:AD:DP:GQ:PL 1/1:2,295:297:99:7186,775,0 chrXII 953884 . G T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.64;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3759,397,0 chrXII 954049 . G A 2414 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2447,258,0 chrXII 954167 . G A 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.859;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=13.5821;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.528;QD=21.98;ReadPosRankSum=-0.277;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,118:122:99:2715,274,0 chrXII 954228 . T C 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.168;QD=25.33;ReadPosRankSum=2.344;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3521,366,0 chrXII 954459 . T A 5557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=8.2488;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.084;QD=22.41;ReadPosRankSum=1.718;SB=-3.020e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:5557,580,0 chrXII 954609 . G C 6378.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=22.0188;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.03;SB=-3.575e+03 GT:AD:DP:GQ:PL 1/1:0,274:277:99:6378,693,0 chrXII 954827 . T C 5411.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.12;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5411,571,0 chrXII 954897 . A G 5762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=17.1281;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.958;QD=23.42;ReadPosRankSum=1.676;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:1,245:246:99:5762,621,0 chrXII 955168 . A G 4424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=200;Dels=0.00;FS=7.374;HaplotypeScore=20.2262;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.726;QD=22.12;ReadPosRankSum=2.313;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:2,196:200:99:4424,469,0 chrXII 955729 . C T 3955.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.1958;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.47;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3955,409,0 chrXII 955765 . G C 3663.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=17.96;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:3663,393,0 chrXII 955822 . T C 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.590;DP=224;Dels=0.00;FS=15.964;HaplotypeScore=17.2770;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.520;QD=15.35;ReadPosRankSum=3.803;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:5,216:224:99:3439,372,0 chrXII 956127 . C A 6183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=266;Dels=0.00;FS=4.004;HaplotypeScore=17.4085;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.470;QD=23.24;ReadPosRankSum=-0.722;SB=-3.009e+03 GT:AD:DP:GQ:PL 1/1:1,263:266:99:6183,622,0 chrXII 956153 . T G 5704.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.37;SB=-3.270e+03 GT:AD:DP:GQ:PL 1/1:0,250:255:99:5704,601,0 chrXII 956371 . G C 5175.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=13.9615;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.63;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:5175,550,0 chrXII 956543 . C T 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.678;QD=21.79;ReadPosRankSum=1.581;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3508,361,0 chrXII 956545 . A G 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.7485;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-1.399;QD=21.23;ReadPosRankSum=1.710;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,155:160:99:3397,360,0 chrXII 956593 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.30;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3300,340,0 chrXII 956833 . A G 3321.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.7552;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=24.07;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3321,363,0 chrXII 957013 . C T 3884.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.54;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3884,403,0 chrXII 957061 . A G 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=3.424;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-1.710;QD=22.88;ReadPosRankSum=1.710;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3547,384,0 chrXII 957064 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=22.92;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3575,378,0 chrXII 957106 . C T 2616 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=18.29;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2649,276,0 chrXII 957115 . C T 2732 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.59;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2765,288,0 chrXII 957529 . A G 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=140;Dels=0.00;FS=3.042;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.817;QD=23.00;ReadPosRankSum=2.415;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3253,354,0 chrXII 957638 . A T 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=149;Dels=0.00;FS=2.983;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.140;QD=21.56;ReadPosRankSum=2.417;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3246,339,0 chrXII 958009 . A G 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.251;QD=21.29;ReadPosRankSum=1.707;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2993,324,0 chrXII 958253 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.70;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3701,385,0 chrXII 958349 . C T 3387.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=24.37;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3387,352,0 chrXII 958370 . A G 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=171;Dels=0.00;FS=3.299;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=-0.436;QD=20.90;ReadPosRankSum=1.712;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3574,378,0 chrXII 958385 . C A 4339.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.5008;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.14;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4339,445,0 chrXII 958623 . A G 6175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=265;Dels=0.00;FS=2.975;HaplotypeScore=21.9198;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.551;QD=23.30;ReadPosRankSum=2.422;SB=-3.257e+03 GT:AD:DP:GQ:PL 1/1:2,263:265:99:6175,655,0 chrXII 959099 . C T 3667.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.06;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3667,390,0 chrXII 959121 . A T 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.048;QD=23.46;ReadPosRankSum=1.711;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3942,406,0 chrXII 959190 . T C 2967 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.48;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3000,318,0 chrXII 959546 . G A 3806.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.55;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3806,388,0 chrXII 959627 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=25.83;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2771,285,0 chrXII 959679 . C A 1941 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.22;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1974,201,0 chrXII 959687 . A G 1739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-1.242;QD=17.57;ReadPosRankSum=1.697;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1772,192,0 chrXII 959702 . A C 1819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=105;Dels=0.00;FS=2.963;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=-0.012;QD=17.32;ReadPosRankSum=2.379;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:1852,201,0 chrXII 959834 . C T 2092 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.05;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2125,228,0 chrXII 960045 . C T 2590 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2623,273,0 chrXII 960131 . C T 1892 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=22.52;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1925,207,0 chrXII 960141 . A G 1715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-0.146;QD=20.66;ReadPosRankSum=1.690;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1748,186,0 chrXII 960158 . G A 1793 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=19.70;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1826,189,0 chrXII 960178 . A G 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=107;Dels=0.00;FS=2.941;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-0.587;QD=16.96;ReadPosRankSum=2.312;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:1848,195,0 chrXII 960228 . A C 2694 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.08;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2727,291,0 chrXII 960347 . T C 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=147;Dels=0.00;FS=2.741;HaplotypeScore=7.9958;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.527;QD=24.59;ReadPosRankSum=2.383;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3615,384,0 chrXII 960476 . G A 4496.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.70;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4496,466,0 chrXII 960996 . C T 2753 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.0199;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=22.02;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2786,282,0 chrXII 960999 . A C 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=127;Dels=0.00;FS=2.991;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-1.083;QD=20.46;ReadPosRankSum=2.411;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2632,279,0 chrXII 961196 . A T 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=124;Dels=0.00;FS=3.046;HaplotypeScore=7.4455;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=1.197;QD=23.60;ReadPosRankSum=1.563;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2960,318,0 chrXII 961235 . T A 2719 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=23.64;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2752,294,0 chrXII 961565 . A T 3152 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3185,330,0 chrXII 961655 . G A 2704 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=22.92;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2737,276,0 chrXII 961667 . A G 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-1.295;QD=18.99;ReadPosRankSum=1.703;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2293,249,0 chrXII 961676 . C T 2059 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=17.90;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2092,219,0 chrXII 961688 . T C 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=4.260;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.058;QD=17.17;ReadPosRankSum=1.703;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2093,228,0 chrXII 961731 . A G 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.163;QD=17.49;ReadPosRankSum=1.703;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2079,222,0 chrXII 961961 . A G 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=6.482;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-1.652;QD=23.47;ReadPosRankSum=1.652;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3084,324,0 chrXII 961974 . C T 2864 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.48;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2897,297,0 chrXII 962189 . G A 4645.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.71;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4645,484,0 chrXII 962683 . G A 2453 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.36;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2486,258,0 chrXII 962717 . T C 2447 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.23;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2480,264,0 chrXII 963090 . G A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.6450;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.26;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3372,354,0 chrXII 963160 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.42;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3687,402,0 chrXII 963364 . C G 2491 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.66;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2524,261,0 chrXII 963392 . A G 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.577;DP=107;Dels=0.00;FS=8.087;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.209;QD=21.49;ReadPosRankSum=3.651;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:5,101:107:99:2332,249,0 chrXII 963469 . A G 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=145;Dels=0.01;FS=6.237;HaplotypeScore=14.8302;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.318;QD=23.66;ReadPosRankSum=2.398;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3430,363,0 chrXII 963501 . C A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=97.9038;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=0.21;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:6:57,6,0 chrXII 963619 . T C 2757 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2790,291,0 chrXII 963807 . G A 4512.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=25.49;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4512,460,0 chrXII 963928 . T C 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=4.519;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.213;QD=22.02;ReadPosRankSum=1.628;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3699,405,0 chrXII 964054 . A G 4007.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.73;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4007,424,0 chrXII 964078 . G A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.89;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3631,373,0 chrXII 964132 . C T 2850 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.27;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2883,300,0 chrXII 964450 . C T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.59;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3320,348,0 chrXII 964503 . A G 2777 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.88;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2810,294,0 chrXII 964507 . T C 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=136;Dels=0.00;FS=2.948;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-1.455;QD=20.53;ReadPosRankSum=2.377;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2825,297,0 chrXII 964591 . T G 3757.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3757,394,0 chrXII 964951 . C T 3384.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.66;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3384,351,0 chrXII 964996 . G A 4048.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.99;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4048,421,0 chrXII 965047 . T A 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=132;Dels=0.00;FS=3.077;HaplotypeScore=7.4875;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=1.286;QD=22.77;ReadPosRankSum=1.443;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3039,309,0 chrXII 965215 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.85;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3343,357,0 chrXII 965233 . G A 3202 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.78;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3235,331,0 chrXII 965294 . T C 2822 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.94;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2855,306,0 chrXII 965342 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.47;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2774,300,0 chrXII 965348 . T C 2611 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.58;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2644,279,0 chrXII 965441 . C T 2839 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.18;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2872,297,0 chrXII 965658 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.36;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2924,294,0 chrXII 966011 . A G 4192.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4192,459,0 chrXII 966217 . C T 4803.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4803,508,0 chrXII 966841 . A G 3525.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.4431;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.89;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3525,381,0 chrXII 967075 . C G 3154 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.86;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3187,342,0 chrXII 967268 . A G 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.221;QD=22.16;ReadPosRankSum=1.704;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2736,297,0 chrXII 967302 . T C 2571 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2604,282,0 chrXII 967624 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.73;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3654,411,0 chrXII 968703 . C T 2952 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.81;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2985,324,0 chrXII 968902 . C G 3388.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.0170;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.05;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3388,366,0 chrXII 969880 . A G 2866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=126;Dels=0.00;FS=3.445;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.127;QD=22.75;ReadPosRankSum=1.677;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2899,312,0 chrXII 970242 . C G 3901.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.4968;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.93;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3901,420,0 chrXII 970288 . G T 3560.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.90;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3560,367,0 chrXII 971373 . C G 5076.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.07;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,216:220:99:5076,535,0 chrXII 974574 . A G 2296 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.73;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2329,249,0 chrXII 974822 . C T 1934 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9429;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.30;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1967,207,0 chrXII 974945 . G A 2472 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.58;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2505,264,0 chrXII 975612 . C T 912 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:99:945,99,0 chrXII 975675 . G A 1459 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=26.53;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1492,156,0 chrXII 975964 . T G 1832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=90;Dels=0.00;FS=3.446;HaplotypeScore=81.6207;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=1.038;QD=20.36;ReadPosRankSum=2.118;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:2,87:90:99:1865,198,0 chrXII 975966 . A G 1891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=86;Dels=0.00;FS=2.467;HaplotypeScore=79.3094;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=-1.177;QD=21.99;ReadPosRankSum=2.918;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1924,204,0 chrXII 976122 . T C 1329 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=24.16;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1362,144,0 chrXII 981116 . A G 262.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.085;DP=735;Dels=0.00;FS=0.000;HaplotypeScore=22.3113;MLEAC=1;MLEAF=0.500;MQ=5.27;MQ0=648;MQRankSum=3.715;QD=0.36;ReadPosRankSum=-2.833;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:657,70:735:99:292,0,313 chrXII 981375 . G T 632.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.831;DP=635;Dels=0.00;FS=0.659;HaplotypeScore=57.6368;MLEAC=1;MLEAF=0.500;MQ=10.42;MQ0=431;MQRankSum=-4.255;QD=1.00;ReadPosRankSum=0.369;SB=-1.750e+02 GT:AD:DP:GQ:PL 0/1:420,209:635:99:662,0,1764 chrXII 981381 . G A 323.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.615;DP=585;Dels=0.00;FS=0.796;HaplotypeScore=56.8481;MLEAC=1;MLEAF=0.500;MQ=10.84;MQ0=388;MQRankSum=5.091;QD=0.55;ReadPosRankSum=1.956;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:500,84:585:99:353,0,2069 chrXII 981385 . T G 78.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.946;DP=565;Dels=0.00;FS=33.983;HaplotypeScore=67.7249;MLEAC=1;MLEAF=0.500;MQ=11.21;MQ0=369;MQRankSum=3.599;QD=0.14;ReadPosRankSum=-1.668;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:491,66:565:99:108,0,2312 chrXII 981407 . C T 55.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;DP=477;Dels=0.03;FS=17.914;HaplotypeScore=96.5166;MLEAC=1;MLEAF=0.500;MQ=12.87;MQ0=291;MQRankSum=2.661;QD=0.12;ReadPosRankSum=-0.673;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:376,85:463:85:85,0,2287 chrXII 981559 . C T 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.833;DP=197;Dels=0.00;FS=163.379;HaplotypeScore=4.6243;MLEAC=1;MLEAF=0.500;MQ=15.13;MQ0=120;MQRankSum=6.751;QD=0.27;ReadPosRankSum=-6.052;SB=-3.102e+01 GT:AD:DP:GQ:PL 0/1:133,63:197:83:83,0,130 chrXII 981700 . A T 89.26 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=2;QD=1.59;SB=-1.223e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:15:122,15,0 chrXII 983374 . T A 4630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=202;Dels=0.00;FS=3.032;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.468;QD=22.92;ReadPosRankSum=2.340;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4630,481,0 chrXII 986469 . T A 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.185;QD=23.51;ReadPosRankSum=1.706;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3160,330,0 chrXII 986998 . A G 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=189;Dels=0.00;FS=6.470;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-1.137;QD=21.63;ReadPosRankSum=2.372;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4088,435,0 chrXII 986999 . T C 4092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=189;Dels=0.00;FS=3.016;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-1.142;QD=21.65;ReadPosRankSum=2.370;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:2,184:189:99:4092,432,0 chrXII 987115 . A G 4535.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.12;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4535,492,0 chrXII 987151 . G A 4792.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.50;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4792,496,0 chrXII 987293 . T C 6030.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.4780;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=25.55;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:6030,652,0 chrXII 987375 . A G 4181.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.5088;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4181,442,0 chrXII 987608 . A G 5163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=213;Dels=0.00;FS=9.155;HaplotypeScore=13.5028;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.646;QD=24.24;ReadPosRankSum=2.967;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:3,210:213:99:5163,544,0 chrXII 987807 . T C 4516.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.58;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4516,475,0 chrXII 987906 . C T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.24;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3669,393,0 chrXII 987942 . C T 3639.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.19;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3639,384,0 chrXII 987981 . G A 2992 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6061;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.68;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3025,310,0 chrXII 987999 . G A 2718 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.40;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2751,279,0 chrXII 988311 . T A 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.513;DP=156;Dels=0.00;FS=5.404;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.045;QD=23.17;ReadPosRankSum=2.786;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3614,378,0 chrXII 988464 . G A 3311.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.32;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3311,360,0 chrXII 988495 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.28;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3353,357,0 chrXII 989078 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.261;QD=23.13;ReadPosRankSum=1.708;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3377,360,0 chrXII 989108 . A G 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.163;QD=23.34;ReadPosRankSum=1.680;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3161,336,0 chrXII 989610 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.39;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3509,361,0 chrXII 989828 . A G 3805.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.87;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3805,420,0 chrXII 989831 . C T 3779.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.35;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3779,388,0 chrXII 989981 . A G 5191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.322;QD=22.97;ReadPosRankSum=1.717;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:5191,550,0 chrXII 990547 . A G 3763.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3763,402,0 chrXII 990848 . A G 3845.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.16;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3845,408,0 chrXII 990875 . C T 4013.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9266;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.47;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4013,418,0 chrXII 990920 . G T 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=3.085;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.245;QD=22.11;ReadPosRankSum=1.341;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3914,406,0 chrXII 990941 . A G 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=205;Dels=0.00;FS=7.178;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=0.413;QD=22.54;ReadPosRankSum=2.426;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4621,490,0 chrXII 991073 . C T 4873.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=15.4362;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.61;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4873,505,0 chrXII 992990 . A G 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.6972;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.655;QD=23.41;ReadPosRankSum=1.694;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2140,231,0 chrXII 993145 . G T 1859 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1892,192,0 chrXII 993389 . G T 1464 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1497,153,0 chrXII 994340 . T C 2150 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.12;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2183,228,0 chrXII 1000626 . C T 3663.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3663,387,0 chrXII 1001825 . C T 3378.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1556;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.82;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3378,343,0 chrXII 1003525 . T C 3999.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.0784;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=23.66;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3999,435,0 chrXII 1003643 . A G 122.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.991;DP=266;Dels=0.00;FS=102.705;HaplotypeScore=17.2415;MLEAC=1;MLEAF=0.500;MQ=50.10;MQ0=3;MQRankSum=-9.278;QD=0.46;ReadPosRankSum=0.744;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:214,52:266:99:152,0,3996 chrXII 1003840 . T A 570.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.808;DP=295;Dels=0.00;FS=23.679;HaplotypeScore=22.0670;MLEAC=1;MLEAF=0.500;MQ=50.73;MQ0=12;MQRankSum=-12.414;QD=1.93;ReadPosRankSum=4.105;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:204,90:294:99:600,0,4368 chrXII 1005023 . T C 4461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=187;Dels=0.00;FS=3.026;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=0.099;QD=23.86;ReadPosRankSum=2.370;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4461,469,0 chrXII 1006150 . C T 2125 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.15;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2158,231,0 chrXII 1006710 . G A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3310,360,0 chrXII 1006859 . T A 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.095;QD=25.46;ReadPosRankSum=1.681;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3462,355,0 chrXII 1006977 . A G 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.8378;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.163;QD=22.89;ReadPosRankSum=1.643;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2711,288,0 chrXII 1007069 . A G 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.915;QD=22.46;ReadPosRankSum=2.408;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2661,285,0 chrXII 1007084 . G A 2469 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.45;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2502,261,0 chrXII 1007202 . T G 1403 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1436,156,0 chrXII 1007613 . G A 2286 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2319,246,0 chrXII 1007694 . T C 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-1.582;QD=23.62;ReadPosRankSum=2.420;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:2,165:169:99:3991,423,0 chrXII 1007732 . T C 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=167;Dels=0.00;FS=3.046;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.496;QD=23.89;ReadPosRankSum=0.585;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3990,426,0 chrXII 1007751 . G A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.55;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3749,408,0 chrXII 1008642 . G A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.36;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3257,348,0 chrXII 1008704 . G A 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.221;QD=24.01;ReadPosRankSum=0.895;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:2,148:153:99:3674,382,0 chrXII 1008786 . A G 4099.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4099,430,0 chrXII 1009478 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2577,267,0 chrXII 1010157 . C T 3848.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.05;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3848,400,0 chrXII 1010871 . A G 5212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=17.4121;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.356;QD=22.56;ReadPosRankSum=2.375;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:5212,561,0 chrXII 1010934 . G C 4555.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.8875;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.66;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4555,484,0 chrXII 1011169 . T G 4542.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.74;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4542,498,0 chrXII 1011170 . C A 4831.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.06;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4831,499,0 chrXII 1011440 . C T 1221 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.7848;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=16.50;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1254,132,0 chrXII 1011654 . T C 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-1.218;QD=25.06;ReadPosRankSum=1.710;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3884,414,0 chrXII 1012572 . C T 10024.01 filter AC=2;AF=1.00;AN=2;DP=423;Dels=0.00;FS=0.000;HaplotypeScore=50.9472;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.70;SB=-3.666e+03 GT:AD:DP:GQ:PL 1/1:0,422:423:99:10024,1048,0 chrXII 1012749 . C T 10362.01 filter AC=2;AF=1.00;AN=2;DP=459;Dels=0.00;FS=0.000;HaplotypeScore=29.4941;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.58;SB=-5.034e+03 GT:AD:DP:GQ:PL 1/1:0,459:459:99:10362,1075,0 chrXII 1012807 . A G 10698.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.240;DP=517;Dels=0.00;FS=5.137;HaplotypeScore=39.9318;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.116;QD=20.69;ReadPosRankSum=3.432;SB=-4.595e+03 GT:AD:DP:GQ:PL 1/1:4,511:517:99:10698,1138,0 chrXII 1013592 . A C 4663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.087;QD=21.20;ReadPosRankSum=1.685;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:4663,507,0 chrXII 1014017 . C T 4465.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;QD=25.51;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4465,469,0 chrXII 1014215 . A G 989.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.980;DP=330;Dels=0.01;FS=90.375;HaplotypeScore=26.4528;MLEAC=1;MLEAF=0.500;MQ=40.79;MQ0=1;MQRankSum=-5.429;QD=3.00;ReadPosRankSum=-7.997;SB=-9.840e+02 GT:AD:DP:GQ:PL 0/1:192,136:328:99:1019,0,641 chrXII 1014217 . T G 905.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-8.336;DP=334;Dels=0.01;FS=92.851;HaplotypeScore=26.4528;MLEAC=1;MLEAF=0.500;MQ=41.11;MQ0=0;MQRankSum=-5.988;QD=2.71;ReadPosRankSum=-7.520;SB=-9.670e+02 GT:AD:DP:GQ:PL 0/1:202,123:332:99:935,0,719 chrXII 1014219 . A G 776.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.450;DP=324;Dels=0.01;FS=78.459;HaplotypeScore=375.7404;MLEAC=1;MLEAF=0.500;MQ=40.38;MQ0=0;MQRankSum=-5.997;QD=2.40;ReadPosRankSum=-9.535;SB=-9.480e+02 GT:AD:DP:GQ:PL 0/1:203,119:322:99:806,0,707 chrXII 1014221 . C G 736.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.629;DP=324;Dels=0.00;FS=63.260;HaplotypeScore=384.1376;MLEAC=1;MLEAF=0.500;MQ=40.41;MQ0=0;MQRankSum=-7.510;QD=2.27;ReadPosRankSum=-11.453;SB=-1.005e+03 GT:AD:DP:GQ:PL 0/1:207,117:324:99:766,0,743 chrXII 1014224 . C T 758.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=10.400;DP=324;Dels=0.00;FS=57.876;HaplotypeScore=395.3981;MLEAC=1;MLEAF=0.500;MQ=40.62;MQ0=0;MQRankSum=-5.870;QD=2.34;ReadPosRankSum=-13.920;SB=-1.063e+03 GT:AD:DP:GQ:PL 0/1:204,119:324:99:788,0,697 chrXII 1014332 . C T 2952 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=19.55;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2985,306,0 chrXII 1014919 . C T 5906.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.71;SB=-3.072e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5906,607,0 chrXII 1014976 . C T 4726.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.61;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4726,487,0 chrXII 1014992 . G A 4294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.172;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.6623;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=1.172;QD=21.05;ReadPosRankSum=0.136;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4294,424,0 chrXII 1015108 . G A 6162.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.85;SB=-3.500e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:6162,637,0 chrXII 1015543 . T A 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=87;Dels=0.02;FS=0.000;HaplotypeScore=24.4535;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=1.447;QD=22.66;ReadPosRankSum=1.691;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2004,213,0 chrXII 1015747 . G A 3652.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.8560;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.68;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3652,378,0 chrXII 1016099 . T C 4648.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.4463;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.67;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4648,501,0 chrXII 1016924 . A G 2021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=97;Dels=0.00;FS=9.307;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=0.344;QD=20.84;ReadPosRankSum=2.907;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:3,94:97:99:2054,216,0 chrXII 1016933 . G A 2060 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=21.91;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2093,213,0 chrXII 1016971 . G A 2137 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=19.43;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2170,225,0 chrXII 1016982 . T C 1874 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=17.51;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1907,207,0 chrXII 1017002 . A G 1777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=3.268;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;MQRankSum=-1.666;QD=16.92;ReadPosRankSum=1.699;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:1810,192,0 chrXII 1017008 . C T 1863 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=17.58;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1896,198,0 chrXII 1017052 . C A 2031 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.91;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2064,216,0 chrXII 1017081 . C T 2332 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.39;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2365,243,0 chrXII 1017453 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.36;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3364,345,0 chrXII 1017596 . C A 3353.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.7652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3353,345,0 chrXII 1017718 . C T 2206 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2239,237,0 chrXII 1019140 . A T 99.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.953;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.651;QD=3.82;ReadPosRankSum=1.753;SB=-1.693e+02 GT:AD:DP:GQ:PL 1/1:2,24:26:15:132,15,0 chrXII 1019141 . T A 94.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=28;Dels=0.00;FS=10.098;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;MQRankSum=-2.286;QD=3.37;ReadPosRankSum=2.764;SB=-1.613e+02 GT:AD:DP:GQ:PL 1/1:4,24:28:15:127,15,0 chrXII 1019199 . A G 1288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=8.451;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.433;QD=23.00;ReadPosRankSum=1.670;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1321,138,0 chrXII 1019284 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.68;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1625,168,0 chrXII 1019336 . G A 964 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=18.90;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:997,111,0 chrXII 1019357 . G T 1799 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.77;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1832,192,0 chrXII 1019765 . T C 5177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=210;Dels=0.00;FS=2.964;HaplotypeScore=8.2023;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.029;QD=24.65;ReadPosRankSum=2.344;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:5177,561,0 chrXII 1019825 . G A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.11;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3616,378,0 chrXII 1020038 . G A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.4806;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.57;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3386,363,0 chrXII 1020076 . C T 3013 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=22.32;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3046,318,0 chrXII 1020118 . A T 2490 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.02;FS=0.000;HaplotypeScore=6.6175;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=19.92;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2523,255,0 chrXII 1020119 . G T 2426 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.02;FS=0.000;HaplotypeScore=5.8288;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=19.25;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2459,258,0 chrXII 1020142 . T C 2123 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.15;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2156,234,0 chrXII 1020176 . A G 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=1.283;QD=17.09;ReadPosRankSum=1.636;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1879,204,0 chrXII 1020245 . T G 2433 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.85;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2466,264,0 chrXII 1020317 . G C 2948 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.68;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2981,324,0 chrXII 1020320 . C T 3132 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=22.70;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3165,327,0 chrXII 1020437 . T C 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=107;Dels=0.00;FS=2.695;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.840;QD=24.16;ReadPosRankSum=2.266;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2618,282,0 chrXII 1020605 . T C 3689.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.27;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3689,393,0 chrXII 1020991 . T G 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.116;DP=118;Dels=0.00;FS=2.655;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.908;QD=21.58;ReadPosRankSum=2.387;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2580,276,0 chrXII 1021226 . A C 2965 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=20.73;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2998,321,0 chrXII 1021339 . T C 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.133;DP=166;Dels=0.00;FS=2.900;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.761;QD=23.46;ReadPosRankSum=2.419;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:3894,408,0 chrXII 1021405 . G A 3488.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=23.41;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3488,358,0 chrXII 1021444 . T A 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=3.424;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=41.21;MQ0=0;MQRankSum=-0.367;QD=18.45;ReadPosRankSum=1.706;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2469,255,0 chrXII 1021463 . A G 1729 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=0;QD=14.41;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1762,198,0 chrXII 1021464 . G A 1715 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=0;QD=14.29;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1748,198,0 chrXII 1021471 . T C 1830 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=14.08;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1863,201,0 chrXII 1021493 . A G 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=129;Dels=0.00;FS=5.841;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;MQRankSum=0.102;QD=15.91;ReadPosRankSum=2.946;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2085,225,0 chrXII 1021577 . C T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.10;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3967,414,0 chrXII 1021580 . C T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.80;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3861,417,0 chrXII 1021739 . A G 2816 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.2159;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.47;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2849,303,0 chrXII 1021808 . T G 4114.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.88;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4114,441,0 chrXII 1022290 . A G 3199 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.05;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3232,348,0 chrXII 1022329 . G A 2470 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.15;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2503,270,0 chrXII 1022511 . C T 4576.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.15;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4576,478,0 chrXII 1022570 . T G 5355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.742;QD=24.68;ReadPosRankSum=1.716;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:5355,571,0 chrXII 1022895 . T C 7262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=302;Dels=0.00;FS=6.825;HaplotypeScore=16.0202;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.640;QD=24.05;ReadPosRankSum=2.425;SB=-3.661e+03 GT:AD:DP:GQ:PL 1/1:2,298:302:99:7262,766,0 chrXII 1022933 . C T 6433.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.74;SB=-3.106e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:6433,667,0 chrXII 1023101 . T C 4973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=218;Dels=0.00;FS=7.789;HaplotypeScore=17.1384;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.182;QD=22.81;ReadPosRankSum=2.415;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:2,213:218:99:4973,540,0 chrXII 1023320 . G A 4335.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.22;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4335,445,0 chrXII 1023413 . C T 4642.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.82;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4642,472,0 chrXII 1023823 . C A 4075.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=25.31;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4075,415,0 chrXII 1024016 . T C 897 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.36;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,38:41:99:930,99,0 chrXII 1024017 . C T 897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-0.044;QD=23.00;ReadPosRankSum=1.555;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,38:39:99:930,99,0 chrXII 1024168 . G C 2556 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.82;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2589,270,0 chrXII 1024253 . G A 1943 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.59;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1976,201,0 chrXII 1024265 . T C 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=1.328;QD=19.16;ReadPosRankSum=2.377;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1968,213,0 chrXII 1024303 . T G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=0.012;QD=19.10;ReadPosRankSum=1.657;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2688,288,0 chrXII 1024747 . A G 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.479;QD=23.23;ReadPosRankSum=1.580;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3216,339,0 chrXII 1024893 . T C 1459 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=18.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1492,162,0 chrXII 1025149 . G T 995 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=18.77;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1028,108,0 chrXII 1025152 . C T 966 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=16.95;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:999,105,0 chrXII 1025223 . G A 1973 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.92;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2006,213,0 chrXII 1025420 . G A 2937 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.59;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2970,306,0 chrXII 1025584 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.74;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3058,318,0 chrXII 1025702 . C T 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=3.897;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.849;QD=24.29;ReadPosRankSum=-0.386;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3813,408,0 chrXII 1025733 . C G 3379.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.83;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3379,366,0 chrXII 1025753 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.114;QD=21.50;ReadPosRankSum=1.687;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:1,151:155:99:3332,357,0 chrXII 1025801 . T C 3621.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.0881;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.49;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3621,393,0 chrXII 1026008 . C A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.04;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3846,394,0 chrXII 1026103 . G T 3624.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.49;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3624,376,0 chrXII 1026205 . A G 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=124;Dels=0.00;FS=2.919;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.290;QD=22.77;ReadPosRankSum=2.370;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2857,300,0 chrXII 1026208 . G C 2771 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=22.53;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2804,300,0 chrXII 1026243 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.28;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2609,270,0 chrXII 1026338 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.30;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2549,255,0 chrXII 1026523 . C T 929 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=16.59;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:962,102,0 chrXII 1026527 . A T 907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.268;DP=49;Dels=0.00;FS=2.503;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=-1.260;QD=18.51;ReadPosRankSum=3.268;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:4,45:49:96:940,96,0 chrXII 1026581 . T C 723 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.10;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:78:756,78,0 chrXII 1026781 . G C 467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.056;DP=32;Dels=0.00;FS=7.924;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;MQRankSum=0.615;QD=14.59;ReadPosRankSum=1.621;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:1,30:32:32:500,32,0 chrXII 1026865 . G A 1724 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1757,183,0 chrXII 1026880 . G A 1689 filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=15.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,104:110:99:1722,189,0 chrXII 1026889 . T C 2124 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.511;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=-1.816;QD=16.34;ReadPosRankSum=3.571;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,125:130:99:2157,231,0 chrXII 1027067 . C T 4803.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=25.41;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4803,493,0 chrXII 1027477 . C T 6500.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.90;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:6500,691,0 chrXII 1027483 . A G 5786.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=3.3442;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.34;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5786,627,0 chrXII 1027555 . A G 4571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=228;Dels=0.00;FS=6.053;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-1.265;QD=20.05;ReadPosRankSum=2.969;SB=-2.864e+03 GT:AD:DP:GQ:PL 1/1:3,221:228:99:4571,492,0 chrXII 1027573 . T C 5155.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=8.0937;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.30;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5155,559,0 chrXII 1027615 . C T 5829.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=19.0260;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.08;SB=-3.152e+03 GT:AD:DP:GQ:PL 1/1:0,261:264:99:5829,595,0 chrXII 1027717 . G A 6015.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=15.8634;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.96;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:6015,622,0 chrXII 1028133 . G A 4131.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=24.59;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4131,427,0 chrXII 1028155 . G T 3769.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=24.01;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3769,382,0 chrXII 1028305 . T C 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=122;Dels=0.00;FS=4.051;HaplotypeScore=12.8547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.965;QD=23.20;ReadPosRankSum=1.675;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2863,303,0 chrXII 1028480 . C T 6170.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=17.9037;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=25.71;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:6170,658,0 chrXII 1028522 . G T 6564.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=23.1779;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.58;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6564,703,0 chrXII 1028683 . G C 5339.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=6.0526;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.30;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,260:263:99:5339,568,0 chrXII 1028684 . T C 5292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=266;Dels=0.00;FS=5.384;HaplotypeScore=5.1367;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.195;QD=19.89;ReadPosRankSum=1.693;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:1,265:266:99:5292,579,0 chrXII 1028958 . C T 3395.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.35;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3395,363,0 chrXII 1028974 . C G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=144.8773;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=0.11;SB=-2.176e+01 GT:AD:DP:GQ:PL 1/1:0,2:151:6:48,6,0 chrXII 1029028 . A T 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=150;Dels=0.00;FS=2.853;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=1.196;QD=19.69;ReadPosRankSum=2.417;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:2987,324,0 chrXII 1029053 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.84;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3139,325,0 chrXII 1029072 . T G 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=159;Dels=0.00;FS=7.232;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.770;QD=22.28;ReadPosRankSum=2.418;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3543,378,0 chrXII 1030090 . C T 2607 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.0431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2640,267,0 chrXII 1030200 . T G 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=1.578;QD=24.20;ReadPosRankSum=1.694;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2235,240,0 chrXII 1030239 . G A 3040 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=14.1156;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=23.21;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3073,321,0 chrXII 1030577 . T C 2914 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=18.33;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2947,309,0 chrXII 1030580 . G A 2810 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=18.13;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2843,294,0 chrXII 1030604 . T G 1680 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.79;MQ0=0;QD=13.12;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1713,186,0 chrXII 1030608 . C T 1644 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;QD=13.26;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1677,174,0 chrXII 1030614 . A G 1546 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;QD=12.99;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1579,165,0 chrXII 1031016 . C T 5832.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=13.3316;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.61;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5832,636,0 chrXII 1031228 . A C 7097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=315;Dels=0.00;FS=3.938;HaplotypeScore=26.8976;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.355;QD=22.53;ReadPosRankSum=1.721;SB=-3.351e+03 GT:AD:DP:GQ:PL 1/1:1,311:315:99:7097,763,0 chrXII 1031518 . A G 7415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=17.5912;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.269;QD=22.89;ReadPosRankSum=2.419;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:2,321:324:99:7415,793,0 chrXII 1031571 . G A 4515.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=25.7954;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.05;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4515,475,0 chrXII 1031689 . C T 4134.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.4027;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.76;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4134,427,0 chrXII 1032016 . C T 2772 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.16;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2805,300,0 chrXII 1032050 . A C 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=112;Dels=0.00;FS=2.882;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.055;QD=22.06;ReadPosRankSum=2.362;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2504,270,0 chrXII 1032123 . A G 2181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=4.674;HaplotypeScore=7.3553;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.024;QD=24.78;ReadPosRankSum=1.693;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2214,234,0 chrXII 1032238 . G A 2839 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2872,294,0 chrXII 1032807 . A G 4546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=216;Dels=0.00;FS=2.705;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.915;QD=21.05;ReadPosRankSum=2.427;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:4546,487,0 chrXII 1032821 . A C 5070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=243;Dels=0.00;FS=2.566;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=0.515;QD=20.86;ReadPosRankSum=2.863;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:3,239:243:99:5070,549,0 chrXII 1032857 . C T 4846.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=14.0937;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=19.54;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:4846,499,0 chrXII 1032869 . T C 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=223;Dels=0.00;FS=4.240;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=0.132;QD=18.79;ReadPosRankSum=1.701;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:4190,456,0 chrXII 1033418 . T C 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=3.746;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.922;QD=23.08;ReadPosRankSum=-0.945;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3555,384,0 chrXII 1033763 . C T 2852 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2885,297,0 chrXII 1033895 . C T 2844 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2877,306,0 chrXII 1034027 . G A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:3342,343,0 chrXII 1034073 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3012,321,0 chrXII 1034198 . C T 4502.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.47;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4502,477,0 chrXII 1034264 . G A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3744,393,0 chrXII 1034324 . A T 3657.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3657,379,0 chrXII 1034684 . A C 4578.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.9718;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.36;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4578,487,0 chrXII 1034753 . G A 3729.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.0670;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.06;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3729,390,0 chrXII 1034912 . G A 4523.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.7112;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.68;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4523,466,0 chrXII 1035228 . G A 4586.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=13.4919;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.19;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:4586,498,0 chrXII 1035755 . A G 3630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=168;Dels=0.00;FS=2.864;HaplotypeScore=17.7675;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.094;QD=21.61;ReadPosRankSum=2.360;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3630,396,0 chrXII 1036112 . T C 4455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.8535;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.043;QD=24.61;ReadPosRankSum=1.694;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4455,472,0 chrXII 1036151 . G A 4475.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.86;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4475,460,0 chrXII 1036323 . T C 3993.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.80;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3993,429,0 chrXII 1036568 . G A 4029.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.27;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4029,412,0 chrXII 1036852 . G T 4936.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.96;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4936,517,0 chrXII 1037313 . A G 3467.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.68;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3467,366,0 chrXII 1037709 . C T 3463.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3463,366,0 chrXII 1038200 . C T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=23.28;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3771,405,0 chrXII 1038361 . C A 4316.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.1099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4316,471,0 chrXII 1038948 . A G 2636 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.87;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2669,285,0 chrXII 1039156 . A G 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.3329;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.750;QD=21.61;ReadPosRankSum=1.706;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2929,309,0 chrXII 1039435 . T A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.7775;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3381,346,0 chrXII 1039504 . T C 4213.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.67;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4213,456,0 chrXII 1039762 . C T 3033 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.98;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3066,327,0 chrXII 1040062 . C T 3146 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.80;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3179,325,0 chrXII 1040071 . A G 3006 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.94;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3039,324,0 chrXII 1040317 . C T 3588.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=24.24;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3588,370,0 chrXII 1040530 . C T 4433.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.9141;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.83;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4433,468,0 chrXII 1040785 . G A 4856.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.3071;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=24.90;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4856,496,0 chrXII 1041070 . A G 2801 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2834,300,0 chrXII 1041901 . G A 3816.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.00;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3816,405,0 chrXII 1042079 . C T 3588.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=23.92;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3588,367,0 chrXII 1042085 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=22.27;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3341,337,0 chrXII 1042132 . A G 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.536;QD=22.26;ReadPosRankSum=1.707;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3127,333,0 chrXII 1042302 . G A 3533.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.4158;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.60;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3533,361,0 chrXII 1042381 . T C 4047.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=17.5161;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=24.09;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4047,426,0 chrXII 1042439 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.47;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3708,382,0 chrXII 1042447 . A T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.91;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3571,367,0 chrXII 1042673 . C T 3640.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.5052;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.89;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3640,376,0 chrXII 1043089 . C A 3958.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.54;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3958,420,0 chrXII 1043157 . G C 2961 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.6369;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2994,324,0 chrXII 1043284 . A C 2262 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=12.4756;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.34;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2295,243,0 chrXII 1043666 . C T 3384.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.70;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3384,360,0 chrXII 1043700 . G T 4180.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.23;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4180,424,0 chrXII 1043701 . C T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=21.52;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4045,427,0 chrXII 1043884 . A G 4522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=192;Dels=0.00;FS=2.668;HaplotypeScore=14.3495;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.041;QD=23.55;ReadPosRankSum=2.372;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:2,188:192:99:4522,483,0 chrXII 1044159 . C A 3387.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3387,346,0 chrXII 1044366 . G T 3902.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3902,406,0 chrXII 1044654 . A G 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=3.293;HaplotypeScore=6.7099;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.521;QD=24.06;ReadPosRankSum=1.708;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3465,375,0 chrXII 1044768 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.48;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3338,345,0 chrXII 1044838 . G A 2740 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.62;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2773,288,0 chrXII 1045329 . G A 4028.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=27.03;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4028,412,0 chrXII 1045359 . G T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8456;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.88;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3727,388,0 chrXII 1045642 . T C 2890 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.2707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2923,315,0 chrXII 1045779 . A G 3227.04 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4479;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.57;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3260,348,0 chrXII 1050100 . A G 3165 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.1694;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.83;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3198,345,0 chrXII 1050450 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3025,315,0 chrXII 1051116 . A T 5082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=200;Dels=0.00;FS=7.115;HaplotypeScore=16.5838;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.104;QD=25.41;ReadPosRankSum=1.141;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:5082,512,0 chrXII 1051203 . T C 4132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.6406;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.211;QD=23.61;ReadPosRankSum=1.692;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:4132,436,0 chrXII 1051443 . C G 4083.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.6861;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.33;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:4083,435,0 chrXII 1051794 . T C 2350 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.50;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2383,252,0 chrXII 1051806 . T C 2179 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.01;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2212,237,0 chrXII 1052021 . T C 1919 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=24.60;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1952,207,0 chrXII 1052040 . G A 1462 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;QD=24.78;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1495,159,0 chrXII 1052166 . G A 1701 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=23.62;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1734,183,0 chrXII 1052191 . G A 1590 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=25.65;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1623,168,0 chrXII 1052276 . T A 643 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;MQRankSum=-0.851;QD=10.90;ReadPosRankSum=1.674;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,58:59:72:676,72,0 chrXII 1052344 . A T 1755 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.6185;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=24.37;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1788,186,0 chrXII 1052381 . G A 2583 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=24.60;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2616,279,0 chrXII 1052500 . T C 4915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=209;Dels=0.00;FS=2.515;HaplotypeScore=17.6881;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=1.178;QD=23.52;ReadPosRankSum=2.909;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:3,206:209:99:4915,523,0 chrXII 1052563 . T C 3452.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=22.13;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3452,378,0 chrXII 1052595 . C A 3164 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.6511;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=20.55;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3197,330,0 chrXII 1052608 . A T 3298.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=19.99;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3298,336,0 chrXII 1052618 . G A 3126 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;QD=18.50;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3159,330,0 chrXII 1052624 . G A 3003 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=17.26;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3036,318,0 chrXII 1052679 . A G 4791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.944;DP=245;Dels=0.00;FS=14.153;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=-0.647;QD=19.56;ReadPosRankSum=4.179;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:6,238:245:99:4791,516,0 chrXII 1052745 . T C 6130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=17.1469;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.609;QD=23.49;ReadPosRankSum=2.147;SB=-3.168e+03 GT:AD:DP:GQ:PL 1/1:2,258:261:99:6130,652,0 chrXII 1052775 . G A 5255.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.56;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:5255,538,0 chrXII 1052828 . A G 4064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=187;Dels=0.00;FS=6.480;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=-0.299;QD=21.73;ReadPosRankSum=2.410;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:2,183:187:99:4064,432,0 chrXII 1052841 . T C 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=3.085;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=0.440;QD=22.57;ReadPosRankSum=1.713;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3994,429,0 chrXII 1052955 . G A 4582.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.5608;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.04;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4582,469,0 chrXII 1052996 . T G 4125.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.85;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4125,438,0 chrXII 1053092 . C G 1741 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.49;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1774,186,0 chrXII 1053367 . A G 929 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:99:962,102,0 chrXII 1053416 . C T 1158 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;QD=28.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1191,120,0 chrXII 1053478 . C T 1493 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1526,159,0 chrXII 1053517 . T A 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.056;QD=23.45;ReadPosRankSum=1.676;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1487,162,0 chrXII 1053841 . C T 4431.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.8757;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4431,469,0 chrXII 1054279 . C T 2628 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=24.11;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2661,273,0 chrXII 1054311 . T A 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-1.335;QD=20.74;ReadPosRankSum=1.660;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2024,207,0 chrXII 1054312 . C G 1953 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.56;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1986,207,0 chrXII 1054390 . A G 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=5.721;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.835;QD=22.93;ReadPosRankSum=1.701;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2601,279,0 chrXII 1054922 . T C 1989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=-1.032;QD=24.86;ReadPosRankSum=2.388;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:2022,219,0 chrXII 1054968 . C G 2580 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=22.83;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2613,273,0 chrXII 1055114 . T A 2468 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.84;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2501,267,0 chrXII 1055151 . T A 2685 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=23.97;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2718,276,0 chrXII 1055158 . G C 2560 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3459;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=22.07;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2593,273,0 chrXII 1055417 . T C 2359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=95;Dels=0.00;FS=2.974;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.687;QD=24.83;ReadPosRankSum=2.294;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2392,258,0 chrXII 1055554 . T C 2226 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.80;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2259,240,0 chrXII 1055655 . A T 2184 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.00;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2217,228,0 chrXII 1055717 . T C 2042 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.44;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2075,219,0 chrXII 1055730 . C T 1956 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.98;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1989,207,0 chrXII 1055950 . T G 3630.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.0746;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.53;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3630,393,0 chrXII 1056105 . G C 3365.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6717;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.05;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3365,360,0 chrXII 1056262 . T C 3311.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.17;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3311,354,0 chrXII 1056565 . G A 3908.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.36;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3908,414,0 chrXII 1056569 . G C 3712.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.85;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3712,393,0 chrXII 1056760 . G C 5246.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.5430;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.81;SB=-3.037e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5246,570,0 chrXII 1056900 . G A 4774.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.48;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4774,490,0 chrXII 1057013 . C T 3748.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3748,402,0 chrXII 1057047 . G T 4366.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.01;FS=0.000;HaplotypeScore=10.8298;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.39;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4366,451,0 chrXII 1057084 . T G 3680.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=23.74;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3680,384,0 chrXII 1057223 . C T 3921.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.80;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3921,414,0 chrXII 1057696 . C T 4367.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.99;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4367,457,0 chrXII 1057759 . T C 4779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=212;Dels=0.00;FS=3.093;HaplotypeScore=8.8721;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.275;QD=22.54;ReadPosRankSum=1.667;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4779,511,0 chrXII 1057870 . G A 5376.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.36;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5376,553,0 chrXII 1057933 . T C 5428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=220;Dels=0.00;FS=3.030;HaplotypeScore=11.1465;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.606;QD=24.67;ReadPosRankSum=1.700;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:5428,583,0 chrXII 1058559 . G A 1827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.454;DP=132;Dels=0.01;FS=14.009;HaplotypeScore=8.8584;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.306;QD=13.84;ReadPosRankSum=3.021;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:5,126:131:99:1860,233,0 chrXII 1058560 . A G 1778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=127;Dels=0.03;FS=0.000;HaplotypeScore=13.6874;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.335;QD=14.00;ReadPosRankSum=2.409;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:2,119:123:99:1811,230,0 chrXII 1058607 . C T 3428.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.81;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3428,346,0 chrXII 1058899 . A G 2522 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.49;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2555,276,0 chrXII 1059052 . T C 2141 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.20;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2174,234,0 chrXII 1059054 . G A 2241 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.76;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2274,234,0 chrXII 1059176 . C A 1831 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=16.80;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1864,195,0 chrXII 1059203 . G T 1782 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.99;MQ0=0;QD=15.77;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1815,186,0 chrXII 1059354 . G C 988 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=37.53;MQ0=10;QD=10.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1021,114,0 chrXII 1059412 . C T 537 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=24.33;MQ0=2;QD=6.24;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:60:570,60,0 chrXII 1059428 . A T 223.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.41;MQ0=1;MQRankSum=-1.732;QD=2.93;ReadPosRankSum=1.686;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:1,75:76:27:256,27,0 chrXII 1062137 . T C 192.01 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.57;MQ0=1;QD=16.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:27:225,27,0 chrXII 1062144 . C A 195.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.57;MQ0=1;QD=16.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:27:228,27,0 chrXII 1062149 . C T 197.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.57;MQ0=1;QD=16.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:27:230,27,0 chrXII 1062154 . C T 197.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.57;MQ0=1;QD=16.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:27:230,27,0 chrXII 1062367 . C T 124.98 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;DP=14;Dels=0.00;FS=24.564;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.86;MQ0=1;MQRankSum=0.592;QD=8.93;ReadPosRankSum=1.944;SB=-3.971e+00 GT:AD:DP:GQ:PL 0/1:4,10:14:3:154,0,3 chrXII 1062470 . T A 315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;MQRankSum=0.000;QD=19.69;ReadPosRankSum=1.519;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:1,15:16:39:348,39,0 chrXII 1062491 . G C 570 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=9.4941;MLEAC=2;MLEAF=1.00;MQ=26.43;MQ0=1;QD=18.39;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:603,69,0 chrXII 1062580 . T C 214.01 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=23.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:27:247,27,0 chrXII 1062590 . T C 220.01 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=24.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:27:253,27,0 chrXII 1062600 . A T 270 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=24.55;SB=-4.299e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:33:303,33,0 chrXII 1062666 . G A 68.51 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=9.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:12:101,12,0 chrXII 1062667 . T C 68.51 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=9.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:12:101,12,0 chrXII 1062706 . T C 124.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.96;MQ0=0;QD=10.34;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:18:157,18,0 chrXII 1062713 . C G 152.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.80;MQ0=0;QD=11.70;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:21:185,21,0 chrXII 1062714 . T A 152.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.80;MQ0=0;QD=11.70;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:21:185,21,0 chrXII 1062749 . G A 206.01 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=1;QD=9.81;SB=-2.327e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:27:239,27,0 chrXII 1062793 . A G 78.51 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.67;MQ0=1;QD=5.61;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:1,13:14:12:111,12,0 chrXII 1062804 . T A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.64;MQ0=0;QD=2.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:6:52,6,0 chrXII 1062942 . C T 142.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3983;MLEAC=1;MLEAF=0.500;MQ=15.08;MQ0=22;MQRankSum=0.739;QD=1.01;ReadPosRankSum=-0.430;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:27,113:140:54:172,0,54 chrXII 1062951 . C T 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1869;MLEAC=1;MLEAF=0.500;MQ=15.26;MQ0=25;MQRankSum=-1.288;QD=0.08;ReadPosRankSum=-1.124;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:127,26:153:42:42,0,250 chrXII 1062954 . T C 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=15.26;MQ0=25;MQRankSum=-1.173;QD=0.08;ReadPosRankSum=-1.692;SB=-1.020e+02 GT:AD:DP:GQ:PL 0/1:129,24:153:42:42,0,254 chrXII 1062975 . C T 253.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.140;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3976;MLEAC=1;MLEAF=0.500;MQ=16.73;MQ0=27;MQRankSum=3.215;QD=1.85;ReadPosRankSum=5.732;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,116:137:39:283,0,39 chrXII 1062988 . A C 331 filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.86;MQ0=19;QD=2.98;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:1,110:111:45:364,45,0 chrXII 1063020 . T G 783 filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=20.62;MQ0=21;QD=6.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,117:119:96:816,96,0 chrXII 1063110 . T C 68.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.477;DP=74;Dels=0.00;FS=7.027;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=10.09;MQ0=13;MQRankSum=2.095;QD=0.93;ReadPosRankSum=-2.675;SB=-5.455e+01 GT:AD:DP:GQ:PL 1/1:37,36:74:12:101,12,0 chrXII 1063161 . T C 700 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.434;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=15.29;MQ0=31;MQRankSum=8.287;QD=5.07;ReadPosRankSum=-7.127;SB=-6.540e-03 GT:AD:DP:GQ:PL 1/1:83,54:138:56:733,56,0 chrXII 1063170 . C T 1031 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.088;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=17.43;MQ0=35;MQRankSum=8.928;QD=6.65;ReadPosRankSum=-4.333;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:74,81:155:89:1064,89,0 chrXII 1063812 . C T 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.13;MQ0=0;QD=1.55;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:45,6,0 chrXII 1063872 . C T 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.90;MQ0=0;QD=0.93;SB=-2.677e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:6:45,6,0 chrXII 1063881 . C G 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.03;MQ0=0;QD=1.00;SB=-2.777e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:6:45,6,0 chrXII 1064046 . A T 142.13 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.31;MQ0=1;QD=8.88;SB=-1.111e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:18:175,18,0 chrXII 1064072 . A G 185.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;DP=34;Dels=0.00;FS=44.127;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=23.53;MQ0=0;MQRankSum=-2.046;QD=5.44;ReadPosRankSum=-1.249;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,15:34:99:215,0,288 chrXII 1064074 . A C 179.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.428;DP=34;Dels=0.00;FS=44.127;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=23.53;MQ0=0;MQRankSum=-1.908;QD=5.26;ReadPosRankSum=-1.179;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,15:34:99:209,0,293 chrXII 1064078 . T G 657 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=4.102;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.17;MQ0=0;MQRankSum=-1.444;QD=18.25;ReadPosRankSum=1.636;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:81:690,81,0 chrXII 1064102 . C G 1088 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.81;MQ0=0;QD=18.76;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1121,132,0 chrXII 1064153 . G T 851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.832;DP=48;Dels=0.00;FS=2.377;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=24.16;MQ0=1;MQRankSum=0.897;QD=17.73;ReadPosRankSum=-1.158;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:6,41:48:89:884,89,0 chrXII 1064156 . A G 793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=47;Dels=0.00;FS=18.388;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=1;MQRankSum=-0.673;QD=16.87;ReadPosRankSum=2.235;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:2,45:47:99:826,102,0 chrXII 1064182 . C T 358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.700;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.04;MQ0=1;MQRankSum=-0.030;QD=13.26;ReadPosRankSum=-1.308;SB=-6.900e+01 GT:AD:DP:GQ:PL 1/1:6,21:27:35:391,35,0 chrXII 1064183 . A G 352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.256;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.04;MQ0=1;MQRankSum=-0.882;QD=13.04;ReadPosRankSum=-1.248;SB=-6.800e+01 GT:AD:DP:GQ:PL 1/1:6,21:27:35:385,35,0 chrXII 1064199 . C T 140.03 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.28;MQ0=1;QD=11.67;SB=-2.203e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:173,24,0 chrXII 1064268 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.684;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=12.82;MQ0=0;MQRankSum=1.920;QD=1.51;ReadPosRankSum=1.517;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:3,5:8:6:43,6,0 chrXII 1064292 . T A 54.51 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.92;MQ0=1;QD=1.65;SB=-8.752e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:12:87,12,0 chrXII 1064310 . A G 192.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.454;DP=52;Dels=0.00;FS=49.126;HaplotypeScore=7.5105;MLEAC=1;MLEAF=0.500;MQ=20.43;MQ0=1;MQRankSum=2.565;QD=3.70;ReadPosRankSum=-1.499;SB=-2.865e+01 GT:AD:DP:GQ:PL 0/1:13,39:52:5:222,0,5 chrXII 1064335 . T C 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.624;DP=69;Dels=0.00;FS=39.210;HaplotypeScore=4.1710;MLEAC=1;MLEAF=0.500;MQ=23.09;MQ0=1;MQRankSum=1.433;QD=0.28;ReadPosRankSum=-3.915;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,7:69:49:49,0,523 chrXII 1064339 . A G 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;DP=69;Dels=0.00;FS=77.620;HaplotypeScore=7.3687;MLEAC=1;MLEAF=0.500;MQ=23.09;MQ0=1;MQRankSum=-0.828;QD=0.65;ReadPosRankSum=-3.113;SB=-6.511e-03 GT:AD:DP:GQ:PL 0/1:57,12:69:75:75,0,486 chrXII 1064345 . G A 459.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.500;DP=71;Dels=0.00;FS=87.813;HaplotypeScore=45.5382;MLEAC=1;MLEAF=0.500;MQ=23.28;MQ0=1;MQRankSum=0.477;QD=6.46;ReadPosRankSum=3.179;SB=-5.102e+01 GT:AD:DP:GQ:PL 0/1:14,57:71:59:489,0,59 chrXII 1064352 . C T 171.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;DP=65;Dels=0.00;FS=2.287;HaplotypeScore=37.8910;MLEAC=1;MLEAF=0.500;MQ=23.69;MQ0=1;MQRankSum=1.863;QD=2.63;ReadPosRankSum=-1.446;SB=-2.150e+02 GT:AD:DP:GQ:PL 0/1:31,34:65:99:201,0,342 chrXII 1064353 . T G 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.426;DP=68;Dels=0.00;FS=48.369;HaplotypeScore=61.9356;MLEAC=1;MLEAF=0.500;MQ=23.35;MQ0=1;MQRankSum=0.741;QD=0.37;ReadPosRankSum=0.073;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,22:68:55:55,0,488 chrXII 1064356 . A T 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;DP=68;Dels=0.00;FS=48.369;HaplotypeScore=50.5883;MLEAC=1;MLEAF=0.500;MQ=23.35;MQ0=1;MQRankSum=0.527;QD=0.35;ReadPosRankSum=-0.714;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,22:68:54:54,0,513 chrXII 1064362 . G A 54.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.713;DP=71;Dels=0.00;FS=101.717;HaplotypeScore=54.9656;MLEAC=1;MLEAF=0.500;MQ=23.61;MQ0=1;MQRankSum=1.875;QD=0.76;ReadPosRankSum=-0.477;SB=-5.974e-03 GT:AD:DP:GQ:PL 0/1:53,18:71:84:84,0,480 chrXII 1064363 . G A 178.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.861;DP=70;Dels=0.00;FS=65.009;HaplotypeScore=42.4896;MLEAC=1;MLEAF=0.500;MQ=23.75;MQ0=1;MQRankSum=1.305;QD=2.54;ReadPosRankSum=1.379;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:44,26:70:99:208,0,366 chrXII 1064373 . A G 510.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;DP=68;Dels=0.00;FS=36.841;HaplotypeScore=28.5769;MLEAC=1;MLEAF=0.500;MQ=24.55;MQ0=0;MQRankSum=-0.104;QD=7.50;ReadPosRankSum=3.830;SB=-3.390e+02 GT:AD:DP:GQ:PL 0/1:18,50:68:48:540,0,48 chrXII 1064375 . T A 764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=67;Dels=0.03;FS=0.000;HaplotypeScore=6.5846;MLEAC=2;MLEAF=1.00;MQ=24.65;MQ0=0;MQRankSum=-1.412;QD=11.40;ReadPosRankSum=1.679;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:96:797,96,0 chrXII 1064392 . T C 184.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;DP=63;Dels=0.00;FS=118.150;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.89;MQ0=0;MQRankSum=1.340;QD=2.92;ReadPosRankSum=4.035;SB=1.75 GT:AD:DP:GQ:PL 0/1:27,36:63:99:214,0,304 chrXII 1064399 . T C 191.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;DP=54;Dels=0.00;FS=111.395;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=25.54;MQ0=0;MQRankSum=1.514;QD=3.54;ReadPosRankSum=4.597;SB=-3.014e+00 GT:AD:DP:GQ:PL 0/1:18,36:54:99:221,0,229 chrXII 1064401 . C T 198.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.430;DP=53;Dels=0.00;FS=106.624;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=25.74;MQ0=0;MQRankSum=1.115;QD=3.74;ReadPosRankSum=4.697;SB=-3.014e+00 GT:AD:DP:GQ:PL 0/1:17,36:53:99:228,0,227 chrXII 1064408 . A G 327 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=49;Dels=0.00;FS=6.488;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=26.35;MQ0=0;MQRankSum=-1.732;QD=6.67;ReadPosRankSum=1.591;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:42:360,42,0 chrXII 1064409 . A G 339 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.720;DP=47;Dels=0.00;FS=21.307;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=25.32;MQ0=0;MQRankSum=-0.239;QD=7.21;ReadPosRankSum=2.851;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:3,44:47:42:372,42,0 chrXII 1064423 . T C 93.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;DP=36;Dels=0.00;FS=38.537;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=24.20;MQ0=0;MQRankSum=0.744;QD=2.58;ReadPosRankSum=2.805;SB=-3.025e+00 GT:AD:DP:GQ:PL 0/1:3,33:36:24:123,0,24 chrXII 1064435 . T A 108.26 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.23;MQ0=0;QD=3.49;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,31:31:15:141,15,0 chrXII 1064439 . A G 123.13 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=23.86;MQ0=0;QD=3.97;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:18:156,18,0 chrXII 1064445 . C T 59.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;DP=25;Dels=0.00;FS=24.771;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.64;MQ0=0;MQRankSum=0.451;QD=2.36;ReadPosRankSum=2.254;SB=-3.023e+00 GT:AD:DP:GQ:PL 0/1:2,23:25:25:89,0,25 chrXII 1064447 . A G 70.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;DP=26;Dels=0.00;FS=34.150;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.42;MQ0=0;MQRankSum=0.562;QD=2.69;ReadPosRankSum=2.568;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:3,23:26:44:100,0,44 chrXII 1064450 . C G 63.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.219;DP=28;Dels=0.00;FS=49.925;HaplotypeScore=2.5769;MLEAC=1;MLEAF=0.500;MQ=22.89;MQ0=0;MQRankSum=1.200;QD=2.25;ReadPosRankSum=2.639;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:5,23:28:63:93,0,63 chrXII 1064451 . C G 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.934;DP=29;Dels=0.00;FS=42.965;HaplotypeScore=2.5769;MLEAC=1;MLEAF=0.500;MQ=22.69;MQ0=0;MQRankSum=-0.606;QD=1.14;ReadPosRankSum=-2.165;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:24,5:29:63:63,0,90 chrXII 1064454 . T C 59.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.237;DP=27;Dels=0.00;FS=54.713;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=22.15;MQ0=0;MQRankSum=0.962;QD=2.19;ReadPosRankSum=1.254;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:6,21:27:63:89,0,63 chrXII 1064493 . A C 97.14 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=12.3666;MLEAC=1;MLEAF=0.500;MQ=16.68;MQ0=0;QD=5.11;SB=-8.202e+01 GT:AD:DP:GQ:PL 1/1:0,15:19:18:130,18,0 chrXII 1064500 . G C 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.817;DP=19;Dels=0.00;FS=5.798;HaplotypeScore=8.3006;MLEAC=1;MLEAF=0.500;MQ=16.16;MQ0=0;MQRankSum=-0.803;QD=0.60;ReadPosRankSum=-0.211;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:12,7:19:41:41,0,84 chrXII 1064503 . A G 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=8.3006;MLEAC=1;MLEAF=0.500;MQ=15.13;MQ0=0;MQRankSum=0.887;QD=1.83;ReadPosRankSum=0.296;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:13,5:18:63:63,0,63 chrXII 1064509 . C G 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=4.1871;MLEAC=1;MLEAF=0.500;MQ=15.29;MQ0=0;MQRankSum=1.423;QD=0.67;ReadPosRankSum=-1.212;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:12,5:17:41:41,0,84 chrXII 1064514 . A G 140.03 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=3.1976;MLEAC=2;MLEAF=1.00;MQ=15.29;MQ0=0;QD=8.24;SB=-2.902e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:24:173,24,0 chrXII 1064535 . T C 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;DP=23;Dels=0.00;FS=6.788;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=21.50;MQ0=0;MQRankSum=3.307;QD=2.13;ReadPosRankSum=-1.370;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:16,7:23:79:79,0,100 chrXII 1064565 . C T 448 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=1;QD=14.45;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:54:481,54,0 chrXII 1064593 . A T 488 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.88;MQ0=2;QD=10.84;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:54:521,54,0 chrXII 1064602 . G C 482 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.88;MQ0=2;QD=10.71;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:54:515,54,0 chrXII 1064643 . T C 102.26 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.34;MQ0=2;QD=4.65;SB=-2.824e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:15:135,15,0 chrXII 1064659 . A C 111.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.194;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.97;MQ0=0;MQRankSum=0.880;QD=5.86;ReadPosRankSum=3.194;SB=-2.820e+01 GT:AD:DP:GQ:PL 1/1:5,14:19:15:144,15,0 chrXII 1064679 . A G 24.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=6;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.45;MQ0=0;MQRankSum=1.380;QD=4.13;ReadPosRankSum=1.380;SB=-2.676e+01 GT:AD:DP:GQ:PL 1/1:4,2:6:6:56,6,0 chrXII 1064698 . T C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=2.5114;MLEAC=2;MLEAF=1.00;MQ=24.19;MQ0=0;QD=6.27;SB=-2.176e+01 GT:AD:DP:GQ:PL 1/1:0,2:3:6:50,6,0 chrXII 1064848 . A T 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=4.9229;MLEAC=2;MLEAF=1.00;MQ=15.80;MQ0=3;MQRankSum=-0.731;QD=4.12;ReadPosRankSum=0.731;SB=2.10 GT:AD:DP:GQ:PL 1/1:2,6:8:9:65,9,0 chrXII 1064882 . G A 54.51 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.44;MQ0=3;QD=6.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:12:87,12,0 chrXII 1064897 . G T 75.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.99;MQ0=3;QD=6.84;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:15:108,15,0 chrXII 1064908 . G A 102.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.53;MQ0=1;QD=9.28;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:135,18,0 chrXII 1064935 . T G 13.32 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.180;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=23.4079;MLEAC=1;MLEAF=0.500;MQ=26.45;MQ0=1;MQRankSum=-1.246;QD=0.70;ReadPosRankSum=1.868;SB=-1.113e-01 GT:AD:DP:GQ:PL 0/1:4,11:19:13:43,0,13 chrXII 1064936 . G A 14.28 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.442;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=23.4079;MLEAC=1;MLEAF=0.500;MQ=26.45;MQ0=1;MQRankSum=0.815;QD=0.75;ReadPosRankSum=2.174;SB=-1.140e-01 GT:AD:DP:GQ:PL 0/1:8,11:19:13:44,0,13 chrXII 1064941 . A G 14.28 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=23.9284;MLEAC=1;MLEAF=0.500;MQ=26.91;MQ0=1;MQRankSum=0.258;QD=0.62;ReadPosRankSum=1.511;SB=-1.140e-01 GT:AD:DP:GQ:PL 0/1:6,17:23:13:44,0,13 chrXII 1064942 . G A 15.25 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=29.0041;MLEAC=1;MLEAF=0.500;MQ=26.81;MQ0=1;MQRankSum=0.833;QD=0.69;ReadPosRankSum=1.096;SB=-1.140e-01 GT:AD:DP:GQ:PL 0/1:7,13:22:13:45,0,13 chrXII 1064953 . G A 17.20 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.307;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=23.3248;MLEAC=1;MLEAF=0.500;MQ=26.57;MQ0=1;MQRankSum=0.220;QD=0.72;ReadPosRankSum=-0.157;SB=-1.140e-01 GT:AD:DP:GQ:PL 0/1:10,14:24:13:47,0,13 chrXII 1064958 . G A 20.16 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=32.9736;MLEAC=1;MLEAF=0.500;MQ=26.93;MQ0=1;MQRankSum=-0.074;QD=0.72;ReadPosRankSum=1.357;SB=-1.140e-01 GT:AD:DP:GQ:PL 0/1:12,16:28:13:50,0,13 chrXII 1064959 . G T 23.90 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.953;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=33.9669;MLEAC=1;MLEAF=0.500;MQ=27.01;MQ0=1;MQRankSum=-1.207;QD=0.82;ReadPosRankSum=2.604;SB=14.12 GT:AD:DP:GQ:PL 1/1:7,18:29:6:55,6,0 chrXII 1065160 . T C 772 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.193;DP=63;Dels=0.00;FS=38.834;HaplotypeScore=87.5509;MLEAC=2;MLEAF=1.00;MQ=26.90;MQ0=10;MQRankSum=2.653;QD=12.25;ReadPosRankSum=1.193;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:8,55:63:87:805,87,0 chrXII 1065161 . C A 809 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=87.5509;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=11;QD=12.64;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:90:842,90,0 chrXII 1065277 . C T 167.06 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.35;MQ0=0;QD=18.56;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:21:200,21,0 chrXII 1065282 . A C 155.06 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.84;MQ0=0;QD=12.92;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:21:188,21,0 chrXII 1065364 . G A 94.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.9219;MLEAC=1;MLEAF=0.500;MQ=19.44;MQ0=7;MQRankSum=2.690;QD=1.77;ReadPosRankSum=-2.982;SB=-4.404e+01 GT:AD:DP:GQ:PL 0/1:24,28:53:37:124,0,37 chrXII 1071639 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.23;MQ0=26;QD=0.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:9,19:28:6:57,6,0 chrXIII 283 . A G 28.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.54;MQ0=56;QD=0.49;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:31,28:59:6:60,6,0 chrXIII 5306 . T C 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.39;MQ0=0;QD=6.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:59,6,0 chrXIII 5335 . C A 56.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.550;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.60;MQ0=12;MQRankSum=1.754;QD=3.00;ReadPosRankSum=0.937;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:7,11:19:9:89,9,0 chrXIII 9746 . C T 2678 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=26.25;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2711,270,0 chrXIII 11305 . A G 1902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.663;QD=23.48;ReadPosRankSum=1.689;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1935,198,0 chrXIII 13364 . C T 4628.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.7318;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=28.22;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4628,457,0 chrXIII 13439 . A T 2994 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=108.1831;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=22.01;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3027,298,0 chrXIII 13605 . A C 3612.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.3800;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;QD=18.52;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3612,370,0 chrXIII 13613 . T G 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.2315;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;MQRankSum=-0.329;QD=17.63;ReadPosRankSum=1.697;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3438,355,0 chrXIII 13645 . C T 3837.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=22.05;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3837,385,0 chrXIII 13686 . A C 4943.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=24.72;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4943,508,0 chrXIII 13831 . A G 4068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=169;Dels=0.00;FS=2.916;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=-0.607;QD=24.07;ReadPosRankSum=2.362;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:4068,427,0 chrXIII 13907 . C T 4474.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.3471;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.80;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4474,439,0 chrXIII 13915 . G A 4276.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.27;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4276,424,0 chrXIII 14256 . T G 3134 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.6173;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.48;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3167,330,0 chrXIII 16498 . G T 6140.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=24.1041;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.93;SB=-3.771e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:6140,598,0 chrXIII 23620 . G A 4864.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4864,493,0 chrXIII 24565 . A G 5418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=231;Dels=0.00;FS=3.002;HaplotypeScore=16.2098;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.104;QD=23.45;ReadPosRankSum=2.406;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:2,226:231:99:5418,562,0 chrXIII 25025 . A G 6113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=242;Dels=0.00;FS=3.464;HaplotypeScore=14.6319;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.374;QD=25.26;ReadPosRankSum=1.703;SB=-3.148e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:6113,622,0 chrXIII 25294 . A G 7037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.333;DP=303;Dels=0.00;FS=8.553;HaplotypeScore=20.0057;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.422;QD=23.22;ReadPosRankSum=3.298;SB=-3.430e+03 GT:AD:DP:GQ:PL 1/1:4,295:303:99:7037,742,0 chrXIII 25638 . C T 6367.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=15.1134;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.58;SB=-3.183e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:6367,652,0 chrXIII 26251 . G A 5862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.227;QD=24.94;ReadPosRankSum=1.583;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:1,232:235:99:5862,586,0 chrXIII 26434 . G A 2612 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.24;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2645,262,0 chrXIII 26468 . T C 2142 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.83;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2175,225,0 chrXIII 27274 . C T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=16.4310;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.54;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4141,409,0 chrXIII 27643 . A G 3971.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.6509;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.95;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3971,409,0 chrXIII 27865 . G T 3035 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.94;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3068,313,0 chrXIII 28338 . T C 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.369;QD=26.75;ReadPosRankSum=1.704;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,123:126:99:3370,337,0 chrXIII 28519 . A C 4600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=179;Dels=0.00;FS=2.851;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.817;QD=25.70;ReadPosRankSum=2.422;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4600,472,0 chrXIII 28623 . T C 5571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.335;QD=25.79;ReadPosRankSum=2.393;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:5571,565,0 chrXIII 28695 . C T 5047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=200;Dels=0.00;FS=4.180;HaplotypeScore=14.2186;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.844;QD=25.24;ReadPosRankSum=1.245;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:5047,472,0 chrXIII 28764 . A T 5423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=206;Dels=0.00;FS=3.743;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.715;QD=26.33;ReadPosRankSum=1.648;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:5423,541,0 chrXIII 29145 . A G 4368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=210;Dels=0.00;FS=2.781;HaplotypeScore=11.4827;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.401;QD=20.80;ReadPosRankSum=2.378;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:2,204:210:99:4368,454,0 chrXIII 29826 . C T 6299.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=19.1571;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.32;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:0,255:259:99:6299,625,0 chrXIII 29994 . T G 5087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=18.5346;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.285;QD=23.33;ReadPosRankSum=1.716;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:5087,538,0 chrXIII 30827 . A G 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.362;DP=162;Dels=0.00;FS=5.246;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.340;QD=24.22;ReadPosRankSum=3.405;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:4,158:162:99:3923,414,0 chrXIII 31404 . A G 5230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.033;QD=23.99;ReadPosRankSum=1.684;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:5230,529,0 chrXIII 31828 . G A 2589 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=26.42;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2622,256,0 chrXIII 32108 . T C 3125 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9377;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.85;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3158,327,0 chrXIII 32119 . T C 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.5390;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.456;QD=23.74;ReadPosRankSum=1.706;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3191,325,0 chrXIII 32457 . G T 3963.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.46;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3963,403,0 chrXIII 32504 . G A 4963.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.8550;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.83;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4963,481,0 chrXIII 32621 . G A 5288.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.2303;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.94;SB=-2.888e+03 GT:AD:DP:GQ:PL 1/1:0,208:212:99:5288,529,0 chrXIII 32868 . G A 4542.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=15.9514;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.96;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4542,454,0 chrXIII 33005 . A G 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=21.2001;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.718;QD=23.54;ReadPosRankSum=1.690;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3884,411,0 chrXIII 33236 . G A 4409.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.83;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4409,439,0 chrXIII 33242 . G T 4423.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.0374;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.91;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4423,442,0 chrXIII 33341 . A T 4956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=191;Dels=0.00;FS=3.316;HaplotypeScore=12.1364;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.442;QD=25.95;ReadPosRankSum=1.696;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4956,508,0 chrXIII 33464 . A G 4752.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=16.9276;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.18;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4752,507,0 chrXIII 33506 . C A 5708.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.3664;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=27.05;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5708,571,0 chrXIII 33680 . T C 2964 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.96;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2997,307,0 chrXIII 33731 . C T 3115 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3148,316,0 chrXIII 34289 . G A 7017.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=14.5708;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.38;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:7017,706,0 chrXIII 34473 . T G 6284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=286;Dels=0.00;FS=6.637;HaplotypeScore=14.6914;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.416;QD=21.97;ReadPosRankSum=2.415;SB=-3.645e+03 GT:AD:DP:GQ:PL 1/1:2,283:286:99:6284,649,0 chrXIII 34672 . A G 4577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=198;Dels=0.00;FS=2.847;HaplotypeScore=14.1506;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.168;QD=23.12;ReadPosRankSum=2.412;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:4577,469,0 chrXIII 34777 . G A 4461.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.4257;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=23.23;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4461,442,0 chrXIII 34804 . C A 3470.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=18.76;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3470,343,0 chrXIII 34805 . T A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=18.33;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3373,334,0 chrXIII 36440 . T C 5274.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.6576;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.00;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5274,553,0 chrXIII 37053 . T C 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.195;DP=133;Dels=0.00;FS=5.276;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.863;QD=25.14;ReadPosRankSum=3.353;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:4,129:133:99:3344,345,0 chrXIII 37465 . T C 7335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=292;Dels=0.00;FS=2.832;HaplotypeScore=17.6453;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.492;QD=25.12;ReadPosRankSum=2.408;SB=-3.164e+03 GT:AD:DP:GQ:PL 1/1:2,290:292:99:7335,763,0 chrXIII 37516 . G C 6957.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=9.0936;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=26.06;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:0,263:267:99:6957,712,0 chrXIII 37611 . C T 5236.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=25.05;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5236,517,0 chrXIII 37647 . G A 5379.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=19.6076;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=23.80;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5379,526,0 chrXIII 37836 . A G 3607.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=23.89;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3607,375,0 chrXIII 37845 . A T 3497.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=21.72;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3497,361,0 chrXIII 37888 . C T 1495 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.5713;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;QD=14.51;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1528,153,0 chrXIII 37897 . A T 1283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.50;MQ0=0;MQRankSum=-0.848;QD=13.09;ReadPosRankSum=1.379;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1316,135,0 chrXIII 37900 . G A 1291 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=13.04;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1324,135,0 chrXIII 37925 . T A 1198 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=13.16;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1231,123,0 chrXIII 37977 . T G 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=-1.039;QD=18.81;ReadPosRankSum=1.703;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2290,237,0 chrXIII 38045 . G T 3730.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=25.90;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3730,364,0 chrXIII 38072 . C T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=25.24;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3861,391,0 chrXIII 38121 . A C 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=4.932;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-0.451;QD=24.77;ReadPosRankSum=1.711;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:4136,433,0 chrXIII 39248 . T C 4230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.404;QD=23.24;ReadPosRankSum=1.713;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:4230,439,0 chrXIII 39443 . T C 5543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=231;Dels=0.00;FS=5.277;HaplotypeScore=14.5327;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.197;QD=24.00;ReadPosRankSum=2.952;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:3,226:231:99:5543,568,0 chrXIII 39858 . T C 3634.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.72;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3634,390,0 chrXIII 39888 . G A 3914.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=25.58;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3914,397,0 chrXIII 39977 . C T 2380 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2413,234,0 chrXIII 40087 . T G 1176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=54;Dels=0.00;FS=8.792;HaplotypeScore=5.3141;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.621;QD=21.78;ReadPosRankSum=0.883;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1209,126,0 chrXIII 40376 . C A 3524.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3057;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.82;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3524,358,0 chrXIII 40406 . A G 4676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=201;Dels=0.00;FS=4.816;HaplotypeScore=16.7891;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.536;QD=23.26;ReadPosRankSum=1.697;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,196:201:99:4676,461,0 chrXIII 40487 . T C 5635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.800;DP=238;Dels=0.00;FS=11.785;HaplotypeScore=12.2777;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.285;QD=23.68;ReadPosRankSum=3.820;SB=-3.085e+03 GT:AD:DP:GQ:PL 1/1:5,231:238:99:5635,568,0 chrXIII 40511 . G A 5443.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.52;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:5443,538,0 chrXIII 41051 . G T 6220.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.9567;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=29.07;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:6220,595,0 chrXIII 42127 . A G 3093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=160;Dels=0.00;FS=9.710;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-0.039;QD=19.33;ReadPosRankSum=2.403;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3126,324,0 chrXIII 42136 . A G 2205 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.1767;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=17.09;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2238,240,0 chrXIII 42196 . C G 5476.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=16.5309;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.44;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,240:244:99:5476,589,0 chrXIII 42556 . G A 6555.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=20.0472;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,291:294:99:6555,661,0 chrXIII 43354 . G A 4782.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.5712;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.91;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4782,499,0 chrXIII 43972 . G A 1935 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=14.4228;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.03;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,88:92:99:1968,195,0 chrXIII 44287 . T C 6309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=276;Dels=0.00;FS=2.955;HaplotypeScore=19.0816;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.706;QD=22.86;ReadPosRankSum=2.396;SB=-3.302e+03 GT:AD:DP:GQ:PL 1/1:2,271:276:99:6309,646,0 chrXIII 44455 . C T 4780.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=13.8243;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=16.71;SB=-3.180e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:4780,496,0 chrXIII 44503 . C T 6008.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=15.9129;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.46;SB=-3.280e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:6008,595,0 chrXIII 45908 . T C 1906 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.16;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1939,201,0 chrXIII 45947 . A G 1531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-2.164;QD=22.19;ReadPosRankSum=2.379;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1564,165,0 chrXIII 46009 . C T 180.03 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.04;FS=0.000;HaplotypeScore=11.7187;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=6.92;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,24:25:24:213,24,0 chrXIII 46032 . A G 561 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;QD=12.20;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,44:46:63:594,63,0 chrXIII 46045 . G A 894 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=14.90;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:96:927,96,0 chrXIII 46074 . G A 1663 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=17.88;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1696,168,0 chrXIII 46087 . G A 1996 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=18.31;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2029,201,0 chrXIII 46211 . C T 2961 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=26.20;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2994,297,0 chrXIII 46228 . G A 2962 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=23.51;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2995,309,0 chrXIII 46256 . C G 2821 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=20.01;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2854,291,0 chrXIII 46262 . T C 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;MQRankSum=-0.755;QD=17.97;ReadPosRankSum=1.710;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2836,291,0 chrXIII 46331 . A G 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=198;Dels=0.00;FS=5.356;HaplotypeScore=13.2369;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=1.015;QD=20.56;ReadPosRankSum=1.539;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:3,193:198:99:4070,418,0 chrXIII 46758 . C T 3449.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.13;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3449,346,0 chrXIII 47304 . C T 8872.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=26.0265;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.42;SB=-4.634e+03 GT:AD:DP:GQ:PL 1/1:0,348:349:99:8872,881,0 chrXIII 47637 . C G 4443.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.0803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,195:201:99:4443,474,0 chrXIII 47907 . A G 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=164;Dels=0.00;FS=9.862;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.043;QD=23.82;ReadPosRankSum=2.846;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:3,160:164:99:3907,411,0 chrXIII 48814 . A G 4169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=162;Dels=0.00;FS=5.293;HaplotypeScore=12.4152;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.689;QD=25.73;ReadPosRankSum=1.710;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,158:162:99:4169,427,0 chrXIII 48846 . A G 4267.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.34;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4267,436,0 chrXIII 49008 . A T 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=163;Dels=0.00;FS=2.560;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.068;QD=23.60;ReadPosRankSum=2.846;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3847,394,0 chrXIII 49588 . C T 2823 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.1269;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.98;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2856,280,0 chrXIII 49712 . A C 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=0.188;QD=21.86;ReadPosRankSum=2.918;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1913,210,0 chrXIII 49717 . T C 1930 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=22.98;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1963,204,0 chrXIII 49768 . T C 671 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.74;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:72:704,72,0 chrXIII 49898 . C T 1778 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=27.35;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1811,180,0 chrXIII 50109 . C T 3068 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.8451;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.74;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3101,310,0 chrXIII 50514 . T A 4197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.302;QD=25.13;ReadPosRankSum=2.391;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4197,424,0 chrXIII 50831 . C T 5423.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.99;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5423,541,0 chrXIII 50890 . C A 5620.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.09;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5620,574,0 chrXIII 50955 . T G 5657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=242;Dels=0.00;FS=4.089;HaplotypeScore=21.7877;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.309;QD=23.38;ReadPosRankSum=1.689;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:1,240:242:99:5657,589,0 chrXIII 51084 . T C 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=3.689;HaplotypeScore=8.9040;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.272;QD=25.65;ReadPosRankSum=1.710;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:4104,412,0 chrXIII 51141 . A T 4182.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.609;QD=24.75;ReadPosRankSum=1.691;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4182,415,0 chrXIII 51256 . C T 4969.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.02;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4969,493,0 chrXIII 51358 . G T 5457.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=17.4345;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.58;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:5457,541,0 chrXIII 51433 . G A 5702.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=16.6824;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5702,586,0 chrXIII 51596 . A G 5189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.318;DP=209;Dels=0.00;FS=8.091;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.138;QD=24.83;ReadPosRankSum=3.284;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:4,204:209:99:5189,547,0 chrXIII 51658 . A G 4214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.078;QD=23.41;ReadPosRankSum=1.713;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4214,439,0 chrXIII 51750 . A G 4312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.351;DP=177;Dels=0.00;FS=9.173;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.992;QD=24.36;ReadPosRankSum=3.371;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:4,173:177:99:4312,451,0 chrXIII 51822 . A T 4680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=3.410;HaplotypeScore=11.7185;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.142;QD=25.71;ReadPosRankSum=1.713;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4680,469,0 chrXIII 51951 . T A 5717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=222;Dels=0.00;FS=2.820;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.150;QD=25.75;ReadPosRankSum=2.372;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:5717,583,0 chrXIII 52335 . G A 5807.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.03;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5807,574,0 chrXIII 52482 . G A 4190.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.6857;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.15;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4190,409,0 chrXIII 52494 . A G 3924.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.6815;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.21;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3924,397,0 chrXIII 52926 . C A 5635.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=18.9025;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.58;SB=-3.189e+03 GT:AD:DP:GQ:PL 1/1:0,236:239:99:5635,562,0 chrXIII 53052 . T C 5928.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=12.7060;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.71;SB=-2.943e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5928,607,0 chrXIII 53073 . A G 5401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=238;Dels=0.00;FS=5.963;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.417;QD=22.69;ReadPosRankSum=2.970;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:3,233:238:99:5401,565,0 chrXIII 53227 . G C 4789.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.6747;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.07;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4789,487,0 chrXIII 53276 . C G 4574.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=16.3727;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.46;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4574,469,0 chrXIII 53532 . G A 2302 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=19.68;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2335,234,0 chrXIII 53537 . T C 2160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=4.223;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=1.470;QD=17.70;ReadPosRankSum=1.674;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,118:122:99:2193,222,0 chrXIII 53642 . A G 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=162;Dels=0.00;FS=2.869;HaplotypeScore=15.3242;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-1.024;QD=23.36;ReadPosRankSum=2.419;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3785,385,0 chrXIII 53825 . C A 907 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;QD=6.17;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:96:940,96,0 chrXIII 53841 . A G 1419 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=8.98;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:1452,156,0 chrXIII 53934 . T C 4468.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=17.5932;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.01;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4468,466,0 chrXIII 53982 . C G 4587.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=21.95;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4587,481,0 chrXIII 53991 . C T 4714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.936;DP=209;Dels=0.00;FS=3.158;HaplotypeScore=6.3051;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;MQRankSum=0.373;QD=22.56;ReadPosRankSum=1.218;SB=-2.859e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4714,446,0 chrXIII 54136 . T C 4634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=3.033;HaplotypeScore=10.9097;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.535;QD=23.89;ReadPosRankSum=1.660;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4634,463,0 chrXIII 54192 . A C 4765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=197;Dels=0.00;FS=3.033;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.921;QD=24.19;ReadPosRankSum=2.399;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:4765,502,0 chrXIII 54576 . G C 1791 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=19.90;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1824,186,0 chrXIII 54586 . G A 1594 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=20.44;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1627,162,0 chrXIII 54663 . C T 1792 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.65;MQ0=0;QD=27.15;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1825,186,0 chrXIII 54916 . A G 4289.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.08;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4289,436,0 chrXIII 55092 . T C 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=3.651;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=0.102;QD=22.03;ReadPosRankSum=1.642;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3371,360,0 chrXIII 55098 . A C 3340.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=21.83;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3340,348,0 chrXIII 55152 . A G 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.752;QD=23.84;ReadPosRankSum=1.689;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3839,388,0 chrXIII 55315 . C G 4567.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=25.37;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4567,484,0 chrXIII 55558 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-1.560;QD=21.15;ReadPosRankSum=1.711;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3448,358,0 chrXIII 55582 . A G 3504.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.98;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3504,355,0 chrXIII 55751 . G A 3717.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.29;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3717,364,0 chrXIII 55773 . G C 3769.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.56;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3769,388,0 chrXIII 55803 . G T 4506.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.90;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4506,448,0 chrXIII 56231 . A G 4141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.886;QD=23.53;ReadPosRankSum=1.693;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4141,435,0 chrXIII 56291 . G C 4127.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.31;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4127,418,0 chrXIII 56362 . G A 2705 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.7680;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.92;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2738,276,0 chrXIII 56369 . T C 2345 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.71;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2378,246,0 chrXIII 56748 . T A 2235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=101;Dels=0.00;FS=2.900;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.475;QD=22.13;ReadPosRankSum=2.352;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2268,219,0 chrXIII 57144 . G A 7176.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=14.4873;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.54;SB=-3.414e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:7176,703,0 chrXIII 57585 . C T 933 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.92;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:966,99,0 chrXIII 58688 . T G 3937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=180;Dels=0.00;FS=6.021;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.173;QD=21.87;ReadPosRankSum=1.713;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3937,397,0 chrXIII 58718 . T A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.1029;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.24;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3265,334,0 chrXIII 58847 . T G 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.76;MQ0=0;MQRankSum=0.203;QD=23.17;ReadPosRankSum=1.701;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2605,270,0 chrXIII 59135 . C T 4505.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.6367;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.84;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4505,445,0 chrXIII 59485 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=137;Dels=0.00;FS=7.004;HaplotypeScore=10.8910;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.515;QD=24.09;ReadPosRankSum=2.377;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3300,345,0 chrXIII 59627 . G A 2921 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2954,295,0 chrXIII 59776 . C T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9684;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.31;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3568,361,0 chrXIII 60008 . T C 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=120;Dels=0.00;FS=2.926;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.302;QD=25.44;ReadPosRankSum=2.368;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:3086,324,0 chrXIII 60420 . G C 3781.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.4497;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.63;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3781,385,0 chrXIII 60431 . C T 3850.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.2748;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.62;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3850,376,0 chrXIII 60610 . C T 4511.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=26.54;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4511,448,0 chrXIII 60742 . G A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=24.60;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3912,400,0 chrXIII 60754 . T G 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=157;Dels=0.00;FS=5.091;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=0.078;QD=23.75;ReadPosRankSum=1.710;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3728,382,0 chrXIII 60925 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0803;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.91;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2902,297,0 chrXIII 61147 . A G 3506.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.3144;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.64;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3506,381,0 chrXIII 61164 . A C 3845.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=0.769;QD=22.49;ReadPosRankSum=1.712;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3845,388,0 chrXIII 61366 . A G 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=161;Dels=0.00;FS=9.883;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-2.513;QD=23.94;ReadPosRankSum=2.918;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:3,156:161:99:3855,403,0 chrXIII 61391 . G A 3694.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=25.13;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3694,364,0 chrXIII 61433 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.51;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3512,346,0 chrXIII 61486 . C T 4256.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.0744;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.32;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:4256,421,0 chrXIII 61663 . T C 3459.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.69;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3459,369,0 chrXIII 61741 . A G 4535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=4.556;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.341;QD=25.34;ReadPosRankSum=1.713;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:4535,466,0 chrXIII 61840 . A T 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.099;QD=22.97;ReadPosRankSum=1.704;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2858,288,0 chrXIII 62010 . G C 2786 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2819,291,0 chrXIII 62344 . C A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.0101;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=24.81;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3399,337,0 chrXIII 62513 . A C 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=107;Dels=0.00;FS=3.051;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.242;QD=25.49;ReadPosRankSum=2.335;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2760,279,0 chrXIII 62570 . C T 2861 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=21.67;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2894,283,0 chrXIII 62572 . G A 2824 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=21.23;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,129:133:99:2857,291,0 chrXIII 62594 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=4.745;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=0.422;QD=19.71;ReadPosRankSum=1.690;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3266,339,0 chrXIII 62630 . G T 3858.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.20;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3858,399,0 chrXIII 62996 . C T 4772.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.91;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4772,475,0 chrXIII 63305 . T A 4261.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.49;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4261,427,0 chrXIII 63358 . C A 3473.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.0280;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.54;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3473,340,0 chrXIII 63473 . G A 2445 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.0802;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.64;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2478,252,0 chrXIII 63566 . A G 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=99;Dels=0.00;FS=2.939;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.364;QD=21.83;ReadPosRankSum=2.374;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2194,228,0 chrXIII 63905 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6655;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.04;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3430,357,0 chrXIII 63947 . T A 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=4.895;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.171;QD=25.37;ReadPosRankSum=1.683;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3603,355,0 chrXIII 64024 . G T 3353.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3353,328,0 chrXIII 64724 . T G 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.357;QD=25.98;ReadPosRankSum=1.706;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3430,357,0 chrXIII 64972 . C A 4309.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0785;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.44;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4309,424,0 chrXIII 66821 . C G 4047.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:4047,415,0 chrXIII 67415 . T C 5555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=229;Dels=0.00;FS=3.409;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.927;QD=24.26;ReadPosRankSum=1.702;SB=-2.945e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:5555,568,0 chrXIII 68826 . T C 9773.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=418;Dels=0.00;FS=10.393;HaplotypeScore=19.7178;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.542;QD=23.38;ReadPosRankSum=2.944;SB=-5.219e+03 GT:AD:DP:GQ:PL 1/1:3,411:418:99:9773,1015,0 chrXIII 69109 . C G 7522.01 PASS AC=2;AF=1.00;AN=2;DP=348;Dels=0.00;FS=0.000;HaplotypeScore=7.4630;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.61;SB=-4.355e+03 GT:AD:DP:GQ:PL 1/1:0,346:348:99:7522,796,0 chrXIII 69113 . A G 7828.01 PASS AC=2;AF=1.00;AN=2;DP=351;Dels=0.00;FS=0.000;HaplotypeScore=6.0707;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=22.30;SB=-4.563e+03 GT:AD:DP:GQ:PL 1/1:0,348:351:99:7828,796,0 chrXIII 70163 . A G 4424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.007;QD=22.92;ReadPosRankSum=1.714;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:4424,457,0 chrXIII 70633 . A C 5376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=205;Dels=0.00;FS=9.500;HaplotypeScore=14.2425;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.887;QD=26.22;ReadPosRankSum=1.715;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,204:205:99:5376,550,0 chrXIII 71137 . A G 5892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.353;DP=275;Dels=0.00;FS=5.125;HaplotypeScore=21.7521;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.641;QD=21.43;ReadPosRankSum=3.353;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:4,270:275:99:5892,598,0 chrXIII 71382 . T C 3819.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.8847;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.21;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:3819,388,0 chrXIII 71397 . T C 3667.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.61;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:3667,367,0 chrXIII 71867 . A T 4376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=178;Dels=0.00;FS=2.878;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.214;QD=24.58;ReadPosRankSum=2.408;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4376,430,0 chrXIII 72027 . C T 4449.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.3827;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=27.13;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4449,442,0 chrXIII 72351 . C A 6231.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=14.5530;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.60;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:6231,628,0 chrXIII 73368 . G A 7692.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=17.5412;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.89;SB=-4.253e+03 GT:AD:DP:GQ:PL 1/1:0,308:309:99:7692,757,0 chrXIII 73993 . C T 853 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:886,87,0 chrXIII 74346 . C T 4153.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.45;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:4153,409,0 chrXIII 74436 . C T 2801 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.94;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2834,285,0 chrXIII 74632 . C T 2161 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.9499;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.61;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2194,231,0 chrXIII 74704 . A G 2673 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2706,276,0 chrXIII 74968 . A G 2577 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.26;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2610,273,0 chrXIII 75046 . C A 3573.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=26.86;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3573,349,0 chrXIII 75133 . G A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3526,352,0 chrXIII 75251 . G C 3408.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.4406;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.83;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3408,346,0 chrXIII 75275 . G A 3694.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.30;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3694,382,0 chrXIII 75304 . T C 4832.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.7100;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.30;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4832,499,0 chrXIII 75396 . T C 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=153;Dels=0.00;FS=2.716;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;MQRankSum=-1.237;QD=24.46;ReadPosRankSum=2.417;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3742,379,0 chrXIII 75576 . A G 4558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;DP=195;Dels=0.00;FS=9.011;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.586;QD=23.37;ReadPosRankSum=3.326;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:4,191:195:99:4558,463,0 chrXIII 75781 . T A 3574.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=8.6061;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3574,352,0 chrXIII 76188 . C T 5320.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=22.45;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5320,523,0 chrXIII 76194 . A C 4790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=237;Dels=0.00;FS=4.297;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-1.110;QD=20.21;ReadPosRankSum=1.702;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:1,233:237:99:4790,499,0 chrXIII 76222 . A T 5519.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.39;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5519,538,0 chrXIII 76243 . A G 4440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=240;Dels=0.00;FS=11.749;HaplotypeScore=10.4124;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-0.485;QD=18.50;ReadPosRankSum=1.824;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:3,237:240:99:4440,469,0 chrXIII 76517 . A G 4610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=229;Dels=0.00;FS=3.783;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-1.534;QD=20.13;ReadPosRankSum=1.686;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:4610,487,0 chrXIII 76522 . A G 4770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=234;Dels=0.00;FS=3.896;HaplotypeScore=6.2698;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.840;QD=20.38;ReadPosRankSum=1.658;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:1,232:234:99:4770,484,0 chrXIII 77482 . C T 7444.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.90;SB=-3.857e+03 GT:AD:DP:GQ:PL 1/1:0,297:299:99:7444,739,0 chrXIII 77676 . C G 4641.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=5.3974;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=20.27;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4641,484,0 chrXIII 77679 . C T 4398.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=19.46;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,218:226:99:4398,451,0 chrXIII 77689 . T C 4578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=223;Dels=0.00;FS=6.407;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;MQRankSum=0.660;QD=20.53;ReadPosRankSum=1.701;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:4578,475,0 chrXIII 77739 . G C 3383.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.75;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3383,357,0 chrXIII 77879 . T G 2276 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.8214;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=23.46;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2309,231,0 chrXIII 77934 . C T 1625 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=21.38;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1658,171,0 chrXIII 77979 . T G 2026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.141;QD=21.10;ReadPosRankSum=2.347;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2059,213,0 chrXIII 77997 . C T 2632 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=23.29;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2665,267,0 chrXIII 78097 . A G 1663 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=22.17;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1696,177,0 chrXIII 78101 . T C 1584 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=77;Dels=0.00;FS=2.937;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-0.806;QD=20.57;ReadPosRankSum=2.384;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:2,73:77:99:1617,168,0 chrXIII 78103 . A G 1594 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=21.25;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1627,171,0 chrXIII 78125 . C T 1857 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=22.93;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1890,186,0 chrXIII 78216 . T A 1811 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7775;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=14.97;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1844,180,0 chrXIII 78446 . T A 2016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.394;QD=24.59;ReadPosRankSum=1.690;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:2049,201,0 chrXIII 78538 . C T 4474.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.32;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4474,442,0 chrXIII 78658 . T C 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=130;Dels=0.00;FS=2.573;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.899;QD=25.21;ReadPosRankSum=2.946;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:3277,334,0 chrXIII 78710 . A C 3914.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.01;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3914,409,0 chrXIII 78749 . T A 4636.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.66;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4636,466,0 chrXIII 78777 . T C 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-1.365;QD=23.31;ReadPosRankSum=1.712;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:4009,409,0 chrXIII 78836 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=172;Dels=0.00;FS=10.585;HaplotypeScore=5.9659;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-0.012;QD=19.13;ReadPosRankSum=2.923;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:3,167:172:99:3291,331,0 chrXIII 78839 . G A 3279.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.7040;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=19.18;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3279,336,0 chrXIII 78923 . C T 5062.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.22;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:5062,514,0 chrXIII 79258 . G A 4339.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=18.5342;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=26.14;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,162:166:99:4339,424,0 chrXIII 79575 . C T 5038.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.6834;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=24.70;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5038,490,0 chrXIII 79582 . G A 4729.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=23.65;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4729,469,0 chrXIII 79713 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.241;DP=145;Dels=0.00;FS=12.348;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-1.418;QD=22.23;ReadPosRankSum=3.386;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:4,141:145:99:3256,337,0 chrXIII 79761 . T G 4169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=180;Dels=0.00;FS=4.116;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.895;QD=23.16;ReadPosRankSum=1.693;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:4169,418,0 chrXIII 79783 . T C 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=4.175;HaplotypeScore=5.2109;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.732;QD=20.26;ReadPosRankSum=1.691;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3465,369,0 chrXIII 79850 . A G 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=190;Dels=0.00;FS=8.063;HaplotypeScore=173.7425;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-0.435;QD=19.73;ReadPosRankSum=2.424;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:3748,391,0 chrXIII 79948 . T C 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=184;Dels=0.00;FS=5.580;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-1.028;QD=20.78;ReadPosRankSum=2.918;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:3823,402,0 chrXIII 79953 . G C 3968.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=21.80;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3968,409,0 chrXIII 79968 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=21.77;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3853,388,0 chrXIII 80145 . G A 5424.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.8624;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=25.00;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5424,541,0 chrXIII 80254 . T G 4648.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=26.26;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4648,466,0 chrXIII 80310 . C T 4823.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.94;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4823,484,0 chrXIII 80397 . G A 2199 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.4954;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=16.79;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2232,225,0 chrXIII 80403 . T C 2583 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.9455;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=18.85;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2616,264,0 chrXIII 80679 . A G 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=168;Dels=0.00;FS=3.036;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.502;QD=24.23;ReadPosRankSum=2.345;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:2,162:168:99:4070,424,0 chrXIII 80887 . G A 3569.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.64;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3569,367,0 chrXIII 81063 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0413;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.39;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3262,331,0 chrXIII 81111 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.89;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3808,376,0 chrXIII 81228 . G A 4309.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6917;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.07;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4309,453,0 chrXIII 81243 . C T 4108.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.7290;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=24.60;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4108,412,0 chrXIII 81354 . G A 2879 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.41;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2912,283,0 chrXIII 81991 . G A 3783.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.25;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3783,379,0 chrXIII 82027 . A G 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=3.183;HaplotypeScore=9.0517;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.315;QD=21.96;ReadPosRankSum=1.710;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3382,357,0 chrXIII 82357 . A G 4997.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.63;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4997,514,0 chrXIII 83128 . T C 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.6734;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.660;QD=26.93;ReadPosRankSum=2.419;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:4362,448,0 chrXIII 83176 . T C 4525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.260;QD=25.71;ReadPosRankSum=1.634;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4525,472,0 chrXIII 83404 . G A 6825.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=6.2583;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=24.29;SB=-3.440e+03 GT:AD:DP:GQ:PL 1/1:0,279:281:99:6825,673,0 chrXIII 83417 . C A 6974.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=23.48;SB=-3.429e+03 GT:AD:DP:GQ:PL 1/1:0,296:297:99:6974,703,0 chrXIII 83860 . T C 6522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=271;Dels=0.00;FS=6.233;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.786;QD=24.07;ReadPosRankSum=2.404;SB=-3.631e+03 GT:AD:DP:GQ:PL 1/1:2,268:271:99:6522,688,0 chrXIII 83964 . G A 6791.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=21.6028;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.00;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,283:283:99:6791,667,0 chrXIII 84058 . C T 4859.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=21.89;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4859,472,0 chrXIII 84059 . G T 4733.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.5677;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=21.32;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4733,472,0 chrXIII 84178 . G A 4326.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.75;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4326,445,0 chrXIII 84233 . T C 4527.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.4840;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.87;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4527,460,0 chrXIII 84712 . C T 4594.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.93;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,187:192:99:4594,466,0 chrXIII 84896 . A C 5866.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.73;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5866,607,0 chrXIII 85192 . T A 5598.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.0682;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=26.16;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5598,556,0 chrXIII 85213 . G A 4649.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=20.1537;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.24;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,205:209:99:4649,457,0 chrXIII 85247 . T C 4569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=194;Dels=0.00;FS=2.813;HaplotypeScore=9.4964;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.285;QD=23.55;ReadPosRankSum=2.412;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4569,466,0 chrXIII 85307 . G A 3910.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.84;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3910,400,0 chrXIII 85411 . T A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.04;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3366,331,0 chrXIII 86212 . C T 3533.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8803;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.50;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3533,352,0 chrXIII 86512 . G A 4896.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=26.04;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4896,484,0 chrXIII 86779 . A G 1343 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.75;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1376,144,0 chrXIII 86816 . T A 987 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.04;FS=0.000;HaplotypeScore=18.6793;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=19.74;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1020,102,0 chrXIII 86906 . C T 799 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:39:84:832,84,0 chrXIII 87110 . C T 995 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=24.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1028,102,0 chrXIII 87318 . T C 3029 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=25.24;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3062,315,0 chrXIII 87357 . A G 3531.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.49;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3531,355,0 chrXIII 87360 . T C 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=3.174;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.064;QD=20.83;ReadPosRankSum=1.711;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3375,354,0 chrXIII 87424 . T C 3808.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.7800;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.92;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3808,397,0 chrXIII 87448 . T C 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=177;Dels=0.00;FS=3.460;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.871;QD=22.46;ReadPosRankSum=1.712;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,172:177:99:3975,403,0 chrXIII 87584 . C T 3596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.148;DP=161;Dels=0.00;FS=3.291;HaplotypeScore=8.3251;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=0.888;QD=22.34;ReadPosRankSum=0.281;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3596,341,0 chrXIII 87741 . G C 2423 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.99;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2456,258,0 chrXIII 87907 . C T 2010 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=26.80;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2043,204,0 chrXIII 88106 . T C 2056 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=23.91;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2089,213,0 chrXIII 88125 . A G 1828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=84;Dels=0.00;FS=2.904;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.191;QD=21.76;ReadPosRankSum=2.333;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1861,189,0 chrXIII 88184 . C T 1561 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=17.94;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1594,159,0 chrXIII 88188 . G A 1543 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=17.14;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1576,162,0 chrXIII 88266 . T C 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=105;Dels=0.00;FS=2.985;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.176;QD=21.02;ReadPosRankSum=2.403;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2240,228,0 chrXIII 88377 . T C 3353.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.84;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3353,340,0 chrXIII 88443 . T C 3539.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.1699;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=25.28;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3539,367,0 chrXIII 88542 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.96;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3243,328,0 chrXIII 88808 . A T 2545 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.24;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2578,253,0 chrXIII 89001 . C T 2323 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2356,231,0 chrXIII 89059 . T G 1465 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.87;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,64:67:99:1498,156,0 chrXIII 89321 . T C 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=0.638;QD=22.03;ReadPosRankSum=1.641;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2544,267,0 chrXIII 89325 . A C 2482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=113;Dels=0.00;FS=4.181;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.315;QD=21.96;ReadPosRankSum=1.701;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,109:113:99:2515,255,0 chrXIII 89355 . T A 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=121;Dels=0.00;FS=2.730;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=1.006;QD=21.75;ReadPosRankSum=2.389;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2665,267,0 chrXIII 89556 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-1.308;QD=21.99;ReadPosRankSum=1.709;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3269,345,0 chrXIII 89571 . T C 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=155;Dels=0.00;FS=6.579;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.458;QD=22.01;ReadPosRankSum=2.401;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:2,151:155:99:3412,352,0 chrXIII 89649 . T A 3799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=150;Dels=0.00;FS=3.128;HaplotypeScore=9.5097;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.293;QD=25.33;ReadPosRankSum=1.686;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3799,382,0 chrXIII 89691 . A G 3531.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.02;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3531,369,0 chrXIII 89806 . T C 2788 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.85;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2821,291,0 chrXIII 89860 . C T 3469.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=24.78;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3469,337,0 chrXIII 89876 . C T 3465.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=24.23;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3465,346,0 chrXIII 90409 . G A 5732.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.98;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5732,586,0 chrXIII 90773 . A G 1951 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.17;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1984,201,0 chrXIII 90833 . G C 866 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.03;FS=0.000;HaplotypeScore=5.2779;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.79;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:96:899,96,0 chrXIII 91086 . A G 5085.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.64;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:5085,523,0 chrXIII 91149 . G A 4110.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.53;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4110,406,0 chrXIII 91448 . A G 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=133;Dels=0.00;FS=2.944;HaplotypeScore=10.0400;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.233;QD=22.00;ReadPosRankSum=2.301;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2959,309,0 chrXIII 91485 . G A 2502 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.7379;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.03;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2535,252,0 chrXIII 91527 . A G 2606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=122;Dels=0.00;FS=2.787;HaplotypeScore=6.3798;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;MQRankSum=0.030;QD=21.36;ReadPosRankSum=2.369;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2639,270,0 chrXIII 91532 . T C 2535 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5055;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=19.96;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2568,267,0 chrXIII 91587 . G A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=23.26;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3489,346,0 chrXIII 91597 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.2608;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=22.94;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3303,331,0 chrXIII 91667 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=169;Dels=0.00;FS=5.336;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.929;QD=23.36;ReadPosRankSum=1.711;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,163:169:99:3948,406,0 chrXIII 91733 . G C 3786.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.4698;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.52;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3786,382,0 chrXIII 91890 . A G 4219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.350;QD=24.39;ReadPosRankSum=1.712;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4219,433,0 chrXIII 91960 . G C 3203 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3236,328,0 chrXIII 92218 . C T 4168.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.5178;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=27.24;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:4168,409,0 chrXIII 92384 . C T 5106.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.0171;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:5106,499,0 chrXIII 92531 . G A 4361.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4361,439,0 chrXIII 93860 . G A 6202.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=14.1436;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.91;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:6202,634,0 chrXIII 93961 . A G 6943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.087;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=17.6205;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=1.789;QD=23.30;ReadPosRankSum=2.119;SB=-4.157e+03 GT:AD:DP:GQ:PL 1/1:2,295:298:99:6943,683,0 chrXIII 93980 . T C 6353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.313;QD=21.98;ReadPosRankSum=1.660;SB=-3.876e+03 GT:AD:DP:GQ:PL 1/1:1,288:289:99:6353,667,0 chrXIII 94055 . T C 4496.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.8475;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.18;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4496,454,0 chrXIII 94190 . T C 3878.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=20.85;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3878,408,0 chrXIII 94338 . T A 30.77 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=1.81;SB=-7.977e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:6:62,6,0 chrXIII 94340 . T C 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=1.63;SB=-1.088e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:6:59,6,0 chrXIII 94394 . T A 1012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.979;QD=22.00;ReadPosRankSum=1.657;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1045,108,0 chrXIII 94572 . T C 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.339;DP=132;Dels=0.00;FS=2.329;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.471;QD=25.18;ReadPosRankSum=3.378;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:4,128:132:99:3324,340,0 chrXIII 94695 . C T 5010.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.0079;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.20;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5010,499,0 chrXIII 94812 . C T 4371.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=18.5717;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.15;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:4371,430,0 chrXIII 94898 . G C 3987.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=28.1572;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.02;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3987,409,0 chrXIII 95277 . A C 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.352;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.0512;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.563;QD=24.18;ReadPosRankSum=0.929;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3989,421,0 chrXIII 95343 . A C 3608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=168;Dels=0.00;FS=5.412;HaplotypeScore=13.4544;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.348;QD=21.48;ReadPosRankSum=2.909;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:3,162:168:99:3608,381,0 chrXIII 95482 . A C 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=1.299;QD=24.40;ReadPosRankSum=1.552;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2375,243,0 chrXIII 95529 . C T 1452 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.35;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1485,147,0 chrXIII 95780 . A G 1426 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=27.96;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1459,150,0 chrXIII 95911 . G A 2693 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.8791;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=26.40;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2726,276,0 chrXIII 96019 . C T 4593.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.1180;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.46;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4593,454,0 chrXIII 96022 . G A 4578.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.1180;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.39;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4578,472,0 chrXIII 96832 . A G 3396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=142;Dels=0.00;FS=4.301;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.089;QD=23.92;ReadPosRankSum=1.707;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3396,354,0 chrXIII 96883 . A G 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=158;Dels=0.00;FS=8.603;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.692;QD=24.84;ReadPosRankSum=2.387;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3924,412,0 chrXIII 97472 . A C 3455.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=26.17;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3455,358,0 chrXIII 97548 . T C 3001 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=22.07;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3034,321,0 chrXIII 97600 . G A 1527 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=14.41;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1560,162,0 chrXIII 97628 . G A 1303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=7.189;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=1.109;QD=14.64;ReadPosRankSum=-0.681;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1336,132,0 chrXIII 97656 . T G 1606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=7.044;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.192;QD=19.59;ReadPosRankSum=1.689;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1639,168,0 chrXIII 97705 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=24.79;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2735,271,0 chrXIII 97775 . G A 2230 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=12.9821;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=21.24;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2263,228,0 chrXIII 97791 . T C 1634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=8.129;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=0.089;QD=20.95;ReadPosRankSum=1.688;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1667,174,0 chrXIII 98070 . G A 4498.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.58;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4498,448,0 chrXIII 98310 . T C 5485.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=10.5841;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.12;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5485,586,0 chrXIII 98939 . A G 4980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=15.2348;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.008;QD=23.83;ReadPosRankSum=1.715;SB=-2.836e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4980,508,0 chrXIII 99579 . G A 996 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=16.60;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1029,102,0 chrXIII 99586 . T C 899 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=16.65;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:96:932,96,0 chrXIII 99676 . G A 1828 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=26.88;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1861,183,0 chrXIII 99717 . G A 2300 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=27.71;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:2333,226,0 chrXIII 99880 . C T 4589.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.81;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4589,472,0 chrXIII 100054 . A G 5371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=235;Dels=0.00;FS=3.029;HaplotypeScore=13.4976;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.936;QD=22.86;ReadPosRankSum=2.366;SB=-3.172e+03 GT:AD:DP:GQ:PL 1/1:2,232:235:99:5371,556,0 chrXIII 100124 . G A 5351.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=17.9203;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.48;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5351,526,0 chrXIII 100532 . T C 5109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=241;Dels=0.00;FS=2.977;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.552;QD=21.20;ReadPosRankSum=2.408;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:2,236:241:99:5109,529,0 chrXIII 100551 . C T 5496.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=8.1435;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=21.98;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5496,547,0 chrXIII 100694 . T C 5495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=240;Dels=0.00;FS=3.029;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.820;QD=22.90;ReadPosRankSum=2.429;SB=-3.194e+03 GT:AD:DP:GQ:PL 1/1:2,237:240:99:5495,577,0 chrXIII 100803 . G C 7306.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=12.2896;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.62;SB=-4.270e+03 GT:AD:DP:GQ:PL 1/1:0,320:323:99:7306,739,0 chrXIII 100813 . T C 7206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=319;Dels=0.00;FS=3.221;HaplotypeScore=13.9024;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.902;QD=22.59;ReadPosRankSum=1.382;SB=-4.349e+03 GT:AD:DP:GQ:PL 1/1:1,316:319:99:7206,748,0 chrXIII 101267 . C T 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.9276;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.351;QD=28.26;ReadPosRankSum=1.102;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:1,142:143:99:4041,375,0 chrXIII 101298 . G A 4152.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.0296;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=25.32;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,159:164:99:4152,436,0 chrXIII 101353 . C T 4053.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=24.13;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4053,409,0 chrXIII 101365 . C T 4051.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.7660;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=25.01;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4051,391,0 chrXIII 101469 . A T 5956.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.02;SB=-3.162e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5956,601,0 chrXIII 101681 . T C 5931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=256;Dels=0.00;FS=13.876;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.181;QD=23.17;ReadPosRankSum=3.372;SB=-3.150e+03 GT:AD:DP:GQ:PL 1/1:4,252:256:99:5931,625,0 chrXIII 101716 . T C 6206.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=14.0471;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.69;SB=-3.099e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:6206,646,0 chrXIII 101856 . T C 3818.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.4347;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.86;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3818,400,0 chrXIII 102104 . C G 6213.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=5.6043;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.78;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:6213,661,0 chrXIII 102269 . A G 5926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.249;QD=24.29;ReadPosRankSum=1.647;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:1,242:244:99:5926,616,0 chrXIII 102554 . C T 5551.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=21.6598;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5551,544,0 chrXIII 102605 . A G 6424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=263;Dels=0.00;FS=6.104;HaplotypeScore=20.3242;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.042;QD=24.43;ReadPosRankSum=2.375;SB=-3.516e+03 GT:AD:DP:GQ:PL 1/1:2,260:263:99:6424,655,0 chrXIII 102686 . G A 6550.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=15.8489;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.08;SB=-3.728e+03 GT:AD:DP:GQ:PL 1/1:0,269:272:99:6550,655,0 chrXIII 103133 . T C 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.684;DP=156;Dels=0.00;FS=2.586;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=2.116;QD=24.71;ReadPosRankSum=2.916;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3854,397,0 chrXIII 103361 . A G 4846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=196;Dels=0.00;FS=2.937;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.686;QD=24.72;ReadPosRankSum=2.412;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:4846,496,0 chrXIII 103490 . C G 3879.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.82;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3879,414,0 chrXIII 103591 . C G 3619.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.8924;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.16;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3619,373,0 chrXIII 103608 . C T 3186 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.5647;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=20.55;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3219,322,0 chrXIII 104422 . A T 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=149;Dels=0.00;FS=6.595;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-0.470;QD=24.45;ReadPosRankSum=2.400;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3643,364,0 chrXIII 104449 . G A 3356.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=24.50;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3356,340,0 chrXIII 104473 . T A 3524.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.03;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3524,361,0 chrXIII 104510 . T G 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-1.541;QD=18.62;ReadPosRankSum=1.711;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:1,162:166:99:3124,330,0 chrXIII 104516 . A G 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=3.091;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-0.032;QD=19.10;ReadPosRankSum=1.690;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3147,330,0 chrXIII 104654 . C T 4677.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.0373;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=26.88;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4677,454,0 chrXIII 104772 . C T 5605.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=26.19;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5605,550,0 chrXIII 105255 . T C 3952.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.25;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3952,409,0 chrXIII 105326 . G A 4145.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.67;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4145,418,0 chrXIII 105355 . A G 4165.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.8831;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.40;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4165,442,0 chrXIII 105406 . G A 3759.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.21;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3759,376,0 chrXIII 105409 . T C 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.817;DP=192;Dels=0.00;FS=5.886;HaplotypeScore=2.3134;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-0.314;QD=18.60;ReadPosRankSum=2.932;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:3572,361,0 chrXIII 105707 . G A 4389.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.3694;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.06;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4389,462,0 chrXIII 106249 . A G 3936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=153;Dels=0.00;FS=7.152;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.091;QD=25.73;ReadPosRankSum=2.417;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3936,406,0 chrXIII 106723 . G A 1962 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1995,201,0 chrXIII 107083 . T C 4077.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.9358;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.84;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4077,424,0 chrXIII 107242 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.31;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3133,316,0 chrXIII 107248 . C T 3012 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.53;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3045,301,0 chrXIII 107332 . T C 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=145;Dels=0.00;FS=5.298;HaplotypeScore=7.1437;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.247;QD=25.14;ReadPosRankSum=2.951;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:3645,376,0 chrXIII 107365 . T C 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=149;Dels=0.00;FS=5.238;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.887;QD=24.77;ReadPosRankSum=3.400;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:4,145:149:99:3691,379,0 chrXIII 107666 . T G 4893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=201;Dels=0.00;FS=2.715;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.081;QD=24.34;ReadPosRankSum=2.401;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4893,514,0 chrXIII 107914 . C T 6950.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=21.9482;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.56;SB=-3.257e+03 GT:AD:DP:GQ:PL 1/1:0,281:283:99:6950,688,0 chrXIII 107957 . C T 5598.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=20.0367;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.99;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,221:224:99:5598,568,0 chrXIII 108668 . T C 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.7036;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=0.988;QD=19.70;ReadPosRankSum=2.383;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3008,309,0 chrXIII 108675 . T A 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.210;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.9327;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-1.556;QD=18.57;ReadPosRankSum=2.370;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:2893,283,0 chrXIII 108789 . A G 5961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=229;Dels=0.00;FS=4.584;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.534;QD=26.03;ReadPosRankSum=1.717;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:1,226:229:99:5961,616,0 chrXIII 108901 . C T 6583.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=25.92;SB=-3.193e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:6583,664,0 chrXIII 109270 . T C 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=143;Dels=0.00;FS=7.549;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.325;QD=23.60;ReadPosRankSum=2.344;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:3375,348,0 chrXIII 109435 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=132;Dels=0.00;FS=6.461;HaplotypeScore=8.8766;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.177;QD=25.10;ReadPosRankSum=2.375;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3313,345,0 chrXIII 109584 . G A 5006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.532;QD=26.21;ReadPosRankSum=-0.766;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:5006,487,0 chrXIII 109647 . A G 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=167;Dels=0.01;FS=10.805;HaplotypeScore=10.7316;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.497;QD=23.80;ReadPosRankSum=2.824;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3975,412,0 chrXIII 109687 . A G 4171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=173;Dels=0.00;FS=3.035;HaplotypeScore=9.5618;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.078;QD=24.11;ReadPosRankSum=2.407;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4171,433,0 chrXIII 109858 . C T 4268.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=22.58;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4268,427,0 chrXIII 109860 . C A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=22.44;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4242,415,0 chrXIII 110039 . T C 4016.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.3869;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=25.10;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:4016,412,0 chrXIII 110068 . G A 3128 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=21.87;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3161,327,0 chrXIII 110077 . A G 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;MQRankSum=-1.315;QD=20.99;ReadPosRankSum=1.706;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2846,297,0 chrXIII 110109 . C T 3204.99 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=23.39;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3238,324,0 chrXIII 110245 . G A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=26.25;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3859,382,0 chrXIII 110807 . T C 3673.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.54;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3673,367,0 chrXIII 111909 . T C 4255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=163;Dels=0.00;FS=2.825;HaplotypeScore=9.0795;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.690;QD=26.10;ReadPosRankSum=2.389;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:4255,439,0 chrXIII 112119 . G A 6665.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.54;SB=-3.090e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:6665,658,0 chrXIII 112670 . T C 4614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=182;Dels=0.00;FS=5.700;HaplotypeScore=10.4205;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.144;QD=25.35;ReadPosRankSum=2.939;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:4614,469,0 chrXIII 113091 . G A 5588.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=15.0356;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.87;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5588,559,0 chrXIII 113119 . T C 5176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.356;DP=222;Dels=0.00;FS=14.587;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.140;QD=23.32;ReadPosRankSum=3.396;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:4,214:222:99:5176,550,0 chrXIII 113575 . T C 3648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0920;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.567;QD=24.82;ReadPosRankSum=1.685;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3648,378,0 chrXIII 113641 . C T 3145 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3178,325,0 chrXIII 114304 . T C 3769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=1.151;QD=22.57;ReadPosRankSum=1.711;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3769,388,0 chrXIII 114310 . T C 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=3.579;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=0.334;QD=20.53;ReadPosRankSum=-0.962;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3510,364,0 chrXIII 114535 . C T 7041.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=9.0723;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=24.36;SB=-3.167e+03 GT:AD:DP:GQ:PL 1/1:0,288:289:99:7041,694,0 chrXIII 114553 . C T 7151.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=24.16;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:0,296:296:99:7151,694,0 chrXIII 114963 . G A 4567.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=22.0876;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.55;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4567,448,0 chrXIII 115183 . A G 3298.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.28;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3298,337,0 chrXIII 115293 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.0121;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.63;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2952,300,0 chrXIII 115465 . C T 1762 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.3721;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=18.55;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1795,189,0 chrXIII 115471 . G A 1911 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.3684;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=18.20;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,101:105:99:1944,198,0 chrXIII 115959 . C T 6786.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=25.1192;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.32;SB=-4.025e+03 GT:AD:DP:GQ:PL 1/1:0,289:291:99:6786,682,0 chrXIII 116112 . A G 6282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.707;DP=293;Dels=0.00;FS=5.918;HaplotypeScore=24.0587;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.521;QD=21.44;ReadPosRankSum=2.914;SB=-3.311e+03 GT:AD:DP:GQ:PL 1/1:3,289:293:99:6282,661,0 chrXIII 116448 . T C 3693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=204;Dels=0.00;FS=8.455;HaplotypeScore=14.2876;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.115;QD=18.10;ReadPosRankSum=2.413;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:3693,373,0 chrXIII 117294 . T C 5628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=232;Dels=0.00;FS=9.260;HaplotypeScore=16.3843;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.987;QD=24.26;ReadPosRankSum=2.970;SB=-3.017e+03 GT:AD:DP:GQ:PL 1/1:3,228:232:99:5628,586,0 chrXIII 117342 . C T 5291.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=17.1964;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.00;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5291,544,0 chrXIII 117501 . G C 4487.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.74;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4487,472,0 chrXIII 117651 . A G 5523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=222;Dels=0.00;FS=5.887;HaplotypeScore=11.4762;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.568;QD=24.88;ReadPosRankSum=2.923;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:3,218:222:99:5523,583,0 chrXIII 118473 . A G 4624.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.1775;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.71;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,191:195:99:4624,487,0 chrXIII 118891 . G A 2398 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2431,237,0 chrXIII 119087 . A C 2444 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2477,261,0 chrXIII 119306 . A G 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=4.590;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.142;QD=23.91;ReadPosRankSum=1.658;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,140:144:99:3443,366,0 chrXIII 119467 . A G 4441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=214;Dels=0.00;FS=3.959;HaplotypeScore=5.7766;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.955;QD=20.75;ReadPosRankSum=1.716;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4441,460,0 chrXIII 119476 . G A 4595.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.1402;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.79;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4595,460,0 chrXIII 119630 . C T 4756.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.77;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4756,469,0 chrXIII 120376 . C T 5111.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=13.2384;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=21.38;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5111,543,0 chrXIII 120947 . A G 4512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.364;QD=22.45;ReadPosRankSum=1.663;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4512,451,0 chrXIII 120995 . G A 4220.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.0737;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.64;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4220,418,0 chrXIII 121136 . A T 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=169;Dels=0.00;FS=7.037;HaplotypeScore=19.6076;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.192;QD=22.91;ReadPosRankSum=2.376;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3872,379,0 chrXIII 121512 . G A 4444.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.49;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4444,427,0 chrXIII 121603 . A G 4182.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=171;Dels=0.00;FS=10.662;HaplotypeScore=12.2283;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.171;QD=24.46;ReadPosRankSum=2.747;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:4182,430,0 chrXIII 121847 . G A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.84;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3825,397,0 chrXIII 121935 . C T 2297 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=21.67;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2330,231,0 chrXIII 121948 . G C 2333 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=20.83;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2366,243,0 chrXIII 121951 . T C 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=2.986;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=-1.532;QD=19.59;ReadPosRankSum=2.408;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2345,243,0 chrXIII 121965 . T C 2639 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=19.55;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2672,276,0 chrXIII 122094 . G T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.7493;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=25.86;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3543,349,0 chrXIII 122176 . A G 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.219;DP=154;Dels=0.00;FS=14.306;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-1.355;QD=23.08;ReadPosRankSum=3.390;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:4,149:154:99:3555,367,0 chrXIII 122193 . A G 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=3.718;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=1.279;QD=23.24;ReadPosRankSum=1.642;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3579,375,0 chrXIII 122298 . G T 4105.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.32;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4105,418,0 chrXIII 122317 . C T 4815.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.9537;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.95;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4815,469,0 chrXIII 122362 . G A 4616.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.42;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4616,460,0 chrXIII 122837 . G A 2300 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.2324;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.17;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2333,234,0 chrXIII 123828 . G A 4108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=-1.127;QD=24.75;ReadPosRankSum=0.751;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4108,415,0 chrXIII 123833 . G A 4124.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.9528;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=24.69;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4124,403,0 chrXIII 123850 . C T 3995.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=23.92;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3995,394,0 chrXIII 124000 . T A 5115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=207;Dels=0.00;FS=2.811;HaplotypeScore=11.3562;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=1.572;QD=24.71;ReadPosRankSum=2.307;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:5115,520,0 chrXIII 124027 . C T 4810.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=23.69;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4810,487,0 chrXIII 124045 . G T 119.26 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=188.1041;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=0.56;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:15:152,15,0 chrXIII 124113 . T C 4500.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.7605;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=21.23;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4500,466,0 chrXIII 124135 . G A 5081.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=23.63;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5081,502,0 chrXIII 124216 . C A 6352.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=13.0555;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=24.72;SB=-3.411e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:6352,622,0 chrXIII 124283 . C G 5052.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=23.28;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:5052,535,0 chrXIII 124309 . A G 4701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.414;DP=192;Dels=0.00;FS=9.111;HaplotypeScore=9.0755;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;MQRankSum=-1.239;QD=24.48;ReadPosRankSum=3.359;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:4,187:192:99:4701,481,0 chrXIII 124356 . C T 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=124;Dels=0.00;FS=5.791;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=0.537;QD=21.86;ReadPosRankSum=2.716;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:2744,273,0 chrXIII 124357 . A G 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=-0.183;QD=20.88;ReadPosRankSum=1.619;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,122:126:99:2664,273,0 chrXIII 124406 . C G 1220 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=10.00;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:1253,129,0 chrXIII 124408 . C G 1274 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=10.36;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1307,135,0 chrXIII 124455 . T C 1568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.415;DP=131;Dels=0.00;FS=15.152;HaplotypeScore=5.6823;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=1.547;QD=11.97;ReadPosRankSum=-0.648;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:1,130:131:99:1601,165,0 chrXIII 124497 . A G 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.034;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.4559;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-0.539;QD=18.84;ReadPosRankSum=4.334;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:7,92:99:99:1898,195,0 chrXIII 124499 . C T 2004 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=21.55;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,89:92:99:2037,201,0 chrXIII 124675 . T C 1706 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=25.09;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1739,180,0 chrXIII 124697 . T C 2096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.602;QD=26.20;ReadPosRankSum=1.689;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:1,79:80:99:2129,216,0 chrXIII 124777 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=26.56;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2583,258,0 chrXIII 124802 . C T 2733 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=25.31;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2766,274,0 chrXIII 124844 . G A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.84;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3238,319,0 chrXIII 124877 . G T 4118.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.27;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4118,415,0 chrXIII 125006 . G A 4798.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.61;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4798,490,0 chrXIII 125244 . A G 4427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=193;Dels=0.01;FS=2.723;HaplotypeScore=10.6353;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.096;QD=22.94;ReadPosRankSum=2.373;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4427,454,0 chrXIII 125640 . T C 4260.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=25.06;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4260,436,0 chrXIII 125677 . T G 4111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.327;QD=23.49;ReadPosRankSum=1.692;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4111,427,0 chrXIII 125874 . T C 4557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=206;Dels=0.00;FS=5.959;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-0.956;QD=22.12;ReadPosRankSum=2.907;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:3,201:206:99:4557,466,0 chrXIII 125883 . A T 4638.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.74;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4638,469,0 chrXIII 126281 . G A 4157.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.48;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:4157,409,0 chrXIII 126625 . C T 3882.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.8598;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.96;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3882,388,0 chrXIII 126663 . C T 4101.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.0246;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.31;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4101,403,0 chrXIII 127093 . T C 3917.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3917,409,0 chrXIII 127429 . T C 4758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.970;QD=23.67;ReadPosRankSum=1.680;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4758,493,0 chrXIII 127550 . T C 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=186;Dels=0.00;FS=7.694;HaplotypeScore=24.0783;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.258;QD=21.46;ReadPosRankSum=2.423;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:3991,406,0 chrXIII 127589 . A T 4491.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.66;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4491,442,0 chrXIII 128432 . A G 5008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=217;Dels=0.00;FS=2.577;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.395;QD=23.08;ReadPosRankSum=2.912;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:3,213:217:99:5008,514,0 chrXIII 128498 . G A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.1264;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3737,379,0 chrXIII 128877 . A G 4121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=3.715;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.342;QD=24.53;ReadPosRankSum=1.649;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:4121,421,0 chrXIII 129009 . C T 5189.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.9536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.75;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:5189,502,0 chrXIII 129083 . G A 5291.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=17.9403;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.20;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5291,520,0 chrXIII 129400 . T G 7087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=291;Dels=0.00;FS=4.225;HaplotypeScore=20.7505;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.435;QD=24.35;ReadPosRankSum=1.708;SB=-3.088e+03 GT:AD:DP:GQ:PL 1/1:1,290:291:99:7087,727,0 chrXIII 129456 . T C 6267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=242;Dels=0.00;FS=3.028;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.022;QD=25.90;ReadPosRankSum=1.703;SB=-3.333e+03 GT:AD:DP:GQ:PL 1/1:1,240:242:99:6267,649,0 chrXIII 129926 . C T 3186 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.70;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3219,331,0 chrXIII 130073 . T C 3901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.445;QD=24.85;ReadPosRankSum=1.688;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3901,394,0 chrXIII 130218 . T C 4340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.746;DP=194;Dels=0.00;FS=5.453;HaplotypeScore=14.4722;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.321;QD=22.37;ReadPosRankSum=2.912;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:4340,442,0 chrXIII 130360 . C A 4469.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=18.3232;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.41;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4469,445,0 chrXIII 130721 . A G 4491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=188;Dels=0.00;FS=3.297;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.364;QD=23.89;ReadPosRankSum=1.677;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4491,480,0 chrXIII 131093 . C G 4948.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=23.34;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4948,508,0 chrXIII 131106 . T C 5064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=233;Dels=0.00;FS=3.019;HaplotypeScore=4.0411;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=0.585;QD=21.73;ReadPosRankSum=2.418;SB=-3.197e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:5064,520,0 chrXIII 131349 . G T 4372.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=25.13;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4372,430,0 chrXIII 131365 . T A 3984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=163;Dels=0.00;FS=3.029;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=1.289;QD=24.44;ReadPosRankSum=2.419;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3984,391,0 chrXIII 131423 . A G 4055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.617;QD=22.78;ReadPosRankSum=1.693;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4055,424,0 chrXIII 131647 . G C 3680.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.56;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3680,376,0 chrXIII 131930 . A T 3014 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3047,301,0 chrXIII 132028 . A T 2606 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=22.27;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2639,259,0 chrXIII 132039 . G A 2681 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=21.62;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2714,265,0 chrXIII 132061 . A G 2492 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=18.06;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2525,258,0 chrXIII 132065 . G T 2538 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=18.66;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2571,253,0 chrXIII 132088 . T C 1851 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=16.24;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1884,195,0 chrXIII 132276 . A T 4633.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.4274;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=24.91;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4633,475,0 chrXIII 132350 . G A 5356.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.0362;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=26.78;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5356,529,0 chrXIII 132409 . A G 4940.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.9807;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=25.08;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4940,520,0 chrXIII 132552 . C T 5701.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=25.91;SB=-2.978e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5701,559,0 chrXIII 132728 . C T 1178 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.31;MQ0=0;QD=11.33;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1211,117,0 chrXIII 132734 . T A 1272 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=38.51;MQ0=0;QD=10.97;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1305,129,0 chrXIII 132741 . T C 1423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=5.699;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;MQRankSum=-0.879;QD=10.95;ReadPosRankSum=1.252;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:1456,150,0 chrXIII 132751 . C A 1798 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=42.97;MQ0=0;QD=12.84;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:1831,180,0 chrXIII 132818 . C T 2770 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.34;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2803,283,0 chrXIII 132842 . C G 2687 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=23.99;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2720,279,0 chrXIII 132856 . C T 2322 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.92;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2355,231,0 chrXIII 132910 . C T 3013 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=24.70;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3046,310,0 chrXIII 133001 . A T 2529 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=23.86;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2562,264,0 chrXIII 133099 . T C 4923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=193;Dels=0.00;FS=2.809;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=2.143;QD=25.51;ReadPosRankSum=2.424;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4923,502,0 chrXIII 133166 . T C 4098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.9699;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.661;QD=24.54;ReadPosRankSum=1.711;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:4098,427,0 chrXIII 133212 . T C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=141;Dels=0.00;FS=5.944;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.201;QD=23.62;ReadPosRankSum=2.907;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:3330,348,0 chrXIII 133394 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7961;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.82;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2689,273,0 chrXIII 133405 . T C 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.748;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-0.162;QD=19.91;ReadPosRankSum=1.678;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2601,267,0 chrXIII 133436 . A G 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.616;DP=139;Dels=0.00;FS=12.285;HaplotypeScore=17.0411;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.704;QD=18.90;ReadPosRankSum=3.733;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:5,129:139:99:2660,267,0 chrXIII 133555 . G T 3870.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.97;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3870,379,0 chrXIII 133610 . T C 3492.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.42;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3492,355,0 chrXIII 133858 . T C 5035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.4783;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.377;QD=24.32;ReadPosRankSum=1.715;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:5035,543,0 chrXIII 134036 . G A 6015.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.5763;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.60;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:6015,583,0 chrXIII 134620 . C T 7266.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.04;SB=-3.969e+03 GT:AD:DP:GQ:PL 1/1:0,278:279:99:7266,709,0 chrXIII 135169 . A G 2167 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.05;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2200,222,0 chrXIII 135233 . C A 1932 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=22.47;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1965,195,0 chrXIII 135252 . T C 1469 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.29;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1502,153,0 chrXIII 135343 . T C 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.404;QD=27.32;ReadPosRankSum=2.412;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3579,367,0 chrXIII 135387 . G A 3756.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.5780;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.82;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3756,367,0 chrXIII 135470 . G A 3102 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=28.72;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3135,310,0 chrXIII 136477 . A G 4583.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.69;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4583,475,0 chrXIII 136675 . A G 5312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.939;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.4129;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-1.146;QD=26.43;ReadPosRankSum=1.008;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:5312,532,0 chrXIII 136702 . T G 5030.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.8831;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=24.18;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5030,526,0 chrXIII 136948 . A G 5225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.713;DP=217;Dels=0.00;FS=7.543;HaplotypeScore=20.0315;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.939;QD=24.08;ReadPosRankSum=3.764;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:5,210:217:99:5225,541,0 chrXIII 137116 . T C 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=7.236;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.268;QD=23.82;ReadPosRankSum=1.705;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3082,318,0 chrXIII 137172 . C A 2055 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.18;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2088,207,0 chrXIII 137286 . C T 2615 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.90;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2648,262,0 chrXIII 137451 . G A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=25.17;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3347,334,0 chrXIII 137475 . C T 3339.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=24.73;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3339,328,0 chrXIII 137716 . G A 3116 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.42;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3149,307,0 chrXIII 137717 . C T 3116 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=22.26;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3149,313,0 chrXIII 137768 . C A 4354.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.92;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4354,442,0 chrXIII 137804 . T C 4781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=189;Dels=0.00;FS=3.028;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.860;QD=25.30;ReadPosRankSum=2.397;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4781,496,0 chrXIII 137879 . C T 5016.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.4864;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=27.26;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5016,499,0 chrXIII 138042 . A G 5515.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=25.77;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:5515,550,0 chrXIII 138066 . G A 5092.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=25.21;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5092,496,0 chrXIII 138467 . A G 5076.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5076,514,0 chrXIII 138823 . C T 5116.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=17.3419;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.33;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5116,514,0 chrXIII 138914 . G A 4163.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.8261;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.78;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4163,418,0 chrXIII 139013 . A G 4604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=184;Dels=0.00;FS=3.563;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.527;QD=25.02;ReadPosRankSum=1.694;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4604,472,0 chrXIII 139632 . C T 3551.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.5789;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.66;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3551,352,0 chrXIII 139664 . T C 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.351;QD=23.64;ReadPosRankSum=1.659;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3381,340,0 chrXIII 140137 . T A 163.06 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=137.4931;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=1.12;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:21:196,21,0 chrXIII 140328 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.82;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3225,322,0 chrXIII 140395 . G A 3637.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.91;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3637,367,0 chrXIII 140757 . C T 5221.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:5221,532,0 chrXIII 140935 . A G 5047.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:5047,526,0 chrXIII 140970 . A G 5221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.4300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.337;QD=23.52;ReadPosRankSum=1.669;SB=-2.915e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:5221,529,0 chrXIII 141627 . C T 1280 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=25.60;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1313,129,0 chrXIII 141877 . T C 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.562;QD=26.59;ReadPosRankSum=1.698;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2745,276,0 chrXIII 141979 . C T 3650.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=24.17;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3650,370,0 chrXIII 141982 . C T 3720.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=23.69;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3720,367,0 chrXIII 142186 . A G 4280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.3785;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;MQRankSum=-0.787;QD=24.32;ReadPosRankSum=1.417;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4280,448,0 chrXIII 142190 . A G 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.3785;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;MQRankSum=-0.282;QD=24.41;ReadPosRankSum=1.712;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:4248,442,0 chrXIII 142206 . T G 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=179;Dels=0.00;FS=3.608;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=-0.377;QD=22.84;ReadPosRankSum=1.713;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4088,421,0 chrXIII 142395 . C T 2965 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.53;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2998,298,0 chrXIII 142575 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=13.5290;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.69;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3391,348,0 chrXIII 142704 . C T 3147 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.67;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3180,319,0 chrXIII 142824 . G A 4920.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=16.5035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4920,487,0 chrXIII 142984 . G A 3939.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.9529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.17;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3939,403,0 chrXIII 143064 . A C 5517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=9.6053;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.339;QD=22.99;ReadPosRankSum=1.659;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:1,237:240:99:5517,574,0 chrXIII 143613 . G A 4232.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.66;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4232,415,0 chrXIII 144507 . C T 7423.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=18.7709;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.51;SB=-3.483e+03 GT:AD:DP:GQ:PL 1/1:0,290:291:99:7423,745,0 chrXIII 144771 . T C 3954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=169;Dels=0.00;FS=3.332;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.670;QD=23.40;ReadPosRankSum=1.711;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3954,420,0 chrXIII 146101 . A G 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874;DP=80;Dels=0.00;FS=2.679;HaplotypeScore=3.9667;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=-0.810;QD=0.17;ReadPosRankSum=-2.735;SB=-5.101e+01 GT:AD:DP:GQ:PL 0/1:77,3:80:43:43,0,43 chrXIII 146108 . A G 134.13 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=1.68;SB=-5.291e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:18:167,18,0 chrXIII 146198 . T C 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.177;DP=121;Dels=0.00;FS=2.434;HaplotypeScore=7.3924;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.951;QD=24.20;ReadPosRankSum=3.384;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:4,117:121:99:2961,303,0 chrXIII 147350 . T C 1077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.213;QD=26.92;ReadPosRankSum=1.646;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:1,39:40:99:1110,117,0 chrXIII 148721 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2440,240,0 chrXIII 149072 . A G 3619.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3619,370,0 chrXIII 149583 . A G 3910.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.8038;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.34;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3910,409,0 chrXIII 150480 . A T 5356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.572;QD=25.63;ReadPosRankSum=1.666;SB=-2.880e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:5356,538,0 chrXIII 151234 . T C 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=150;Dels=0.00;FS=2.863;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.839;QD=23.68;ReadPosRankSum=2.383;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:2,146:150:99:3552,364,0 chrXIII 151733 . A G 4091.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.89;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4091,415,0 chrXIII 155151 . C T 3974.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.47;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3974,391,0 chrXIII 155649 . G A 3916.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.38;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3916,385,0 chrXIII 156546 . A G 4778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.4052;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.387;QD=25.28;ReadPosRankSum=1.695;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4778,481,0 chrXIII 156894 . A T 7217.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=12.9655;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=27.34;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:7217,721,0 chrXIII 157764 . T G 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.658;DP=137;Dels=0.00;FS=117.762;HaplotypeScore=12.1107;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=0.290;QD=0.23;ReadPosRankSum=-5.652;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,39:137:62:62,0,1442 chrXIII 158433 . T A 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.907;DP=40;Dels=0.00;FS=5.558;HaplotypeScore=5.7489;MLEAC=1;MLEAF=0.500;MQ=58.49;MQ0=0;MQRankSum=-0.581;QD=1.00;ReadPosRankSum=-3.757;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,14:40:70:70,0,513 chrXIII 159532 . C T 3963.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.0065;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.66;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3963,409,0 chrXIII 159727 . T C 1372 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=-0.108;QD=21.11;ReadPosRankSum=1.678;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1405,141,0 chrXIII 159728 . T C 1355 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=20.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1388,141,0 chrXIII 159757 . T G 1310 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1343,138,0 chrXIII 159950 . A T 2452 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=28.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2485,249,0 chrXIII 160000 . C T 1774 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.16;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1807,180,0 chrXIII 160037 . C A 1262 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.2324;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1295,138,0 chrXIII 160146 . C T 3161 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3194,333,0 chrXIII 160611 . T C 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=177;Dels=0.00;FS=7.492;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.604;QD=22.06;ReadPosRankSum=2.408;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3904,400,0 chrXIII 160665 . G A 2985 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.1236;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.87;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3018,301,0 chrXIII 160704 . C T 3083 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.02;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3116,316,0 chrXIII 160785 . G A 4044.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.22;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4044,397,0 chrXIII 160953 . C G 3441.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.1284;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3441,360,0 chrXIII 161085 . T C 6632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.002;DP=279;Dels=0.00;FS=14.055;HaplotypeScore=20.2988;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.008;QD=23.77;ReadPosRankSum=4.022;SB=-3.253e+03 GT:AD:DP:GQ:PL 1/1:6,272:279:99:6632,694,0 chrXIII 161370 . T A 4903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=234;Dels=0.00;FS=4.771;HaplotypeScore=13.6087;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-0.637;QD=20.95;ReadPosRankSum=1.702;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:4903,487,0 chrXIII 161385 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=18.74;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:3972,394,0 chrXIII 161406 . C T 3965.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=13.5290;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=18.11;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:3965,411,0 chrXIII 161572 . T C 3409.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.9226;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=24.18;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3409,352,0 chrXIII 162162 . A G 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=122;Dels=0.00;FS=3.046;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.234;QD=24.71;ReadPosRankSum=2.389;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:3048,312,0 chrXIII 162309 . G A 4617.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.65;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,176:180:99:4617,469,0 chrXIII 162461 . A G 7485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=291;Dels=0.00;FS=5.097;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;MQRankSum=-1.161;QD=25.72;ReadPosRankSum=1.708;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:1,290:291:99:7485,760,0 chrXIII 162647 . G A 4811.01 filter AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=5.6953;MLEAC=2;MLEAF=1.00;MQ=36.41;MQ0=0;QD=20.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4811,475,0 chrXIII 162653 . G A 4493.01 filter AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=35.30;MQ0=0;QD=20.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4493,469,0 chrXIII 162680 . G A 3363.01 filter AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.70;MQ0=0;QD=20.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3363,337,0 chrXIII 162683 . A G 3080 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.73;MQ0=0;MQRankSum=-1.492;QD=19.25;ReadPosRankSum=1.710;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3113,321,0 chrXIII 162700 . G C 1754 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6229;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=17.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1787,192,0 chrXIII 162704 . A C 1455 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=0;MQRankSum=0.199;QD=15.65;ReadPosRankSum=2.397;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1488,162,0 chrXIII 162716 . A G 611 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.302;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1660;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=0;MQRankSum=-0.226;QD=10.36;ReadPosRankSum=3.302;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:4,55:59:69:644,69,0 chrXIII 162983 . C T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.72;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,15:15:6:57,6,0 chrXIII 162992 . T G 133.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.646;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.588;QD=6.66;ReadPosRankSum=2.646;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:3,17:20:18:166,18,0 chrXIII 162995 . G C 144.13 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.27;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:18:177,18,0 chrXIII 163001 . A C 224.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.96;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:27:257,27,0 chrXIII 163007 . T A 233.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.63;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:27:266,27,0 chrXIII 163009 . C A 239.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.85;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:27:272,27,0 chrXIII 163021 . G A 234.01 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.50;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:27:267,27,0 chrXIII 163024 . A G 231.01 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.24;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:27:264,27,0 chrXIII 163055 . C T 750 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;QD=12.10;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:78:783,78,0 chrXIII 163112 . G A 2101 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=25.62;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2134,213,0 chrXIII 163283 . T C 2241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=100;Dels=0.00;FS=4.202;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.208;QD=22.41;ReadPosRankSum=1.697;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2274,234,0 chrXIII 163496 . A G 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.709;HaplotypeScore=5.1197;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.183;QD=25.25;ReadPosRankSum=1.664;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2608,273,0 chrXIII 163883 . G A 5107.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.5317;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.79;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5107,523,0 chrXIII 164021 . G A 4217.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.66;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4217,418,0 chrXIII 164304 . G A 2684 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2717,268,0 chrXIII 164532 . G A 1961 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.80;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1994,210,0 chrXIII 164687 . C T 3765.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=26.15;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3765,376,0 chrXIII 165032 . G T 3181 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.66;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3214,319,0 chrXIII 165218 . A G 1884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.143;QD=22.70;ReadPosRankSum=2.301;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1917,198,0 chrXIII 165482 . A G 1191 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.81;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,46:48:99:1224,126,0 chrXIII 166349 . T C 5082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=212;Dels=0.00;FS=5.450;HaplotypeScore=3.5227;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=1.412;QD=23.97;ReadPosRankSum=2.939;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:3,209:212:99:5082,517,0 chrXIII 166364 . A G 4575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.439;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.2752;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.787;QD=21.79;ReadPosRankSum=-1.417;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4575,450,0 chrXIII 166589 . A C 4016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=182;Dels=0.00;FS=5.400;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.850;QD=22.07;ReadPosRankSum=2.906;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:3,178:182:99:4016,418,0 chrXIII 166619 . G A 5043.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.1931;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=24.48;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5043,505,0 chrXIII 166876 . G A 4215.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=25.39;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4215,412,0 chrXIII 167027 . A T 4804.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=16.8701;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.02;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4804,478,0 chrXIII 167521 . G A 5101.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=25.51;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5101,505,0 chrXIII 167925 . A G 4619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.8764;MLEAC=2;MLEAF=1.00;MQ=41.10;MQ0=0;MQRankSum=-1.427;QD=20.35;ReadPosRankSum=1.671;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4619,484,0 chrXIII 167929 . C T 4885.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=0;QD=21.81;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4885,478,0 chrXIII 167959 . T C 3480.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;QD=17.14;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3480,355,0 chrXIII 167962 . C T 3394.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=16.40;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3394,354,0 chrXIII 168084 . C T 3578.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=22.09;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3578,364,0 chrXIII 168134 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.02;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=21.65;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3064,309,0 chrXIII 168139 . C T 3007 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;QD=21.63;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3040,304,0 chrXIII 168229 . T C 2583 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=24.37;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2616,267,0 chrXIII 168709 . T C 281 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=0;MQRankSum=-2.325;QD=4.76;ReadPosRankSum=2.367;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:2,57:59:33:314,33,0 chrXIII 168722 . C A 524 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;QD=7.08;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:57:557,57,0 chrXIII 168744 . T C 944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.21;MQ0=0;MQRankSum=-1.709;QD=9.17;ReadPosRankSum=2.402;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:977,102,0 chrXIII 168750 . A G 1141 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.14;MQ0=0;QD=10.47;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1174,123,0 chrXIII 168773 . T C 1400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.75;MQ0=0;MQRankSum=-2.036;QD=13.08;ReadPosRankSum=2.404;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:1433,150,0 chrXIII 168774 . T G 1438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.09;MQ0=0;MQRankSum=-1.351;QD=13.19;ReadPosRankSum=1.700;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1471,153,0 chrXIII 168838 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;QD=22.47;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1471,144,0 chrXIII 169347 . T G 4462.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.88;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4462,466,0 chrXIII 169412 . T G 3394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.313;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=1.467;QD=21.21;ReadPosRankSum=1.666;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,156:160:99:3394,343,0 chrXIII 169495 . T C 2248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.3495;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=0.866;QD=11.24;ReadPosRankSum=1.971;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:2281,269,0 chrXIII 169765 . A G 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=-1.252;QD=20.49;ReadPosRankSum=1.705;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2697,279,0 chrXIII 169803 . C A 2247 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=80.7763;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=22.03;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2280,228,0 chrXIII 170785 . T A 7116.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=16.7230;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.07;SB=-2.959e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:7116,694,0 chrXIII 172925 . C T 4795.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.3675;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.20;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4795,472,0 chrXIII 179115 . T A 6005.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=14.4175;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.23;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:6005,598,0 chrXIII 179439 . C T 3739.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=26.52;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3739,370,0 chrXIII 179588 . A G 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=111;Dels=0.00;FS=2.676;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=0.432;QD=25.44;ReadPosRankSum=2.361;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2857,291,0 chrXIII 179677 . T A 1533 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.44;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1566,159,0 chrXIII 179713 . G C 901 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;QD=11.41;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:96:934,96,0 chrXIII 179725 . T C 427.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.988;DP=73;Dels=0.00;FS=33.749;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=38.02;MQ0=0;MQRankSum=-1.285;QD=5.85;ReadPosRankSum=-4.028;SB=-4.579e+02 GT:AD:DP:GQ:PL 0/1:27,46:73:89:457,0,89 chrXIII 179731 . T C 367.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.010;DP=69;Dels=0.00;FS=36.335;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=37.43;MQ0=0;MQRankSum=-3.046;QD=5.32;ReadPosRankSum=-4.638;SB=-3.840e+02 GT:AD:DP:GQ:PL 0/1:31,38:69:99:397,0,140 chrXIII 179737 . T C 314.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.906;DP=67;Dels=0.00;FS=44.492;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=37.65;MQ0=0;MQRankSum=-2.542;QD=4.69;ReadPosRankSum=-5.429;SB=-2.820e+02 GT:AD:DP:GQ:PL 0/1:32,35:67:99:344,0,177 chrXIII 179752 . G A 312 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=8.91;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:33:345,33,0 chrXIII 179965 . A G 904 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.79;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:96:937,96,0 chrXIII 180101 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=28.76;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3767,373,0 chrXIII 180122 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=25.50;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2813,297,0 chrXIII 180733 . T G 2745 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.79;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2778,291,0 chrXIII 181019 . A G 2118 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2151,219,0 chrXIII 181112 . A G 1942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-0.698;QD=21.58;ReadPosRankSum=2.368;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1975,201,0 chrXIII 181117 . A G 1896 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=21.07;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1929,198,0 chrXIII 181539 . G A 4239.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.9229;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=24.94;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4239,430,0 chrXIII 181557 . A C 3932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=175;Dels=0.00;FS=3.024;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-0.821;QD=22.47;ReadPosRankSum=2.393;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3932,414,0 chrXIII 181905 . G A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.5503;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.13;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3397,331,0 chrXIII 182131 . G A 3006 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:3039,301,0 chrXIII 182493 . T C 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.9654;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.528;QD=24.62;ReadPosRankSum=1.616;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2963,303,0 chrXIII 182695 . A T 2610 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2643,259,0 chrXIII 183093 . C T 4073.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.97;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4073,400,0 chrXIII 183207 . A G 1940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.107;QD=26.94;ReadPosRankSum=1.684;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1973,201,0 chrXIII 183321 . T G 1775 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1808,183,0 chrXIII 183601 . A G 85.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=14.25;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:118,12,0 chrXIII 183648 . A G 232.01 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;QD=23.20;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:27:265,27,0 chrXIII 183799 . T C 346 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=18.21;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:48:379,48,0 chrXIII 183800 . A T 369 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=19.42;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:51:402,51,0 chrXIII 183815 . T C 405 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=21.32;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:54:438,54,0 chrXIII 183816 . A C 383 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=20.16;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:51:416,51,0 chrXIII 183824 . G T 366 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.53;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:48:399,48,0 chrXIII 183908 . C G 91.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.25;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:124,12,0 chrXIII 183980 . G A 124.06 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=24.58;MQ0=0;QD=8.86;SB=-7.388e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:21:157,21,0 chrXIII 190087 . T C 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.74;MQ0=0;QD=0.71;SB=-5.777e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:6:56,6,0 chrXIII 190128 . G C 1443 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;QD=18.50;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1476,153,0 chrXIII 190298 . C T 3594.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=26.82;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3594,349,0 chrXIII 190628 . C T 5954.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.70;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5954,598,0 chrXIII 190760 . A G 4834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=3.191;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-1.520;QD=24.17;ReadPosRankSum=1.697;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:1,195:200:99:4834,499,0 chrXIII 190786 . A G 4947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=197;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-0.161;QD=25.11;ReadPosRankSum=1.661;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:4947,502,0 chrXIII 191033 . A C 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.643;DP=168;Dels=0.00;FS=5.574;HaplotypeScore=9.7703;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.618;QD=23.66;ReadPosRankSum=2.618;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:3,163:168:99:3975,423,0 chrXIII 191291 . A G 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.4496;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=0.043;QD=23.10;ReadPosRankSum=1.703;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2828,285,0 chrXIII 191314 . T G 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.307;QD=22.53;ReadPosRankSum=1.704;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2827,286,0 chrXIII 191318 . C T 2881 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.51;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2914,292,0 chrXIII 191452 . T C 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=151;Dels=0.00;FS=2.600;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.889;QD=24.33;ReadPosRankSum=2.416;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:2,146:151:99:3674,373,0 chrXIII 191569 . T C 3524.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.59;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3524,363,0 chrXIII 191792 . A T 1724 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=23.30;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1757,183,0 chrXIII 191837 . A G 1343 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=25.34;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1376,141,0 chrXIII 191860 . G A 1021 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=27.59;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1054,105,0 chrXIII 191863 . C T 922 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=24.92;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:99:955,99,0 chrXIII 191932 . A T 743 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.77;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:75:776,75,0 chrXIII 191956 . G C 582 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.56;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:63:615,63,0 chrXIII 192044 . C A 1300 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=26.53;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1333,141,0 chrXIII 192110 . T C 1225 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.492;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.776;QD=24.02;ReadPosRankSum=2.574;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,47:51:99:1258,132,0 chrXIII 192147 . C T 1223 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=59.0245;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=17.47;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1256,129,0 chrXIII 192321 . T C 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=119;Dels=0.00;FS=3.432;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=1.150;QD=23.26;ReadPosRankSum=1.674;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2801,294,0 chrXIII 192372 . T C 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=145;Dels=0.00;FS=6.107;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=-0.979;QD=24.10;ReadPosRankSum=2.923;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:3,140:145:99:3495,349,0 chrXIII 192396 . C T 3425.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=24.29;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3425,343,0 chrXIII 192432 . T C 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=133;Dels=0.01;FS=8.145;HaplotypeScore=4.2672;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-1.865;QD=17.43;ReadPosRankSum=3.339;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:4,128:132:99:2351,240,0 chrXIII 192436 . T C 2216 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.3841;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=16.54;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2249,234,0 chrXIII 192743 . G A 117.13 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=7.7538;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=5.32;SB=-1.451e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:18:150,18,0 chrXIII 193083 . A G 4474.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.0169;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.94;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4474,454,0 chrXIII 193159 . A G 4292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.243;QD=23.71;ReadPosRankSum=1.713;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:1,176:181:99:4292,439,0 chrXIII 193709 . C A 5827.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.19;SB=-3.537e+03 GT:AD:DP:GQ:PL 1/1:0,273:275:99:5827,586,0 chrXIII 193723 . G A 5875.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=5.8697;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.09;SB=-3.645e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:5875,580,0 chrXIII 193971 . A G 5462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.149;DP=235;Dels=0.00;FS=4.421;HaplotypeScore=10.5202;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.189;QD=23.24;ReadPosRankSum=2.118;SB=-3.092e+03 GT:AD:DP:GQ:PL 1/1:4,231:235:99:5462,545,0 chrXIII 194335 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.3780;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.12;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3642,358,0 chrXIII 194373 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=152;Dels=0.00;FS=6.779;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.221;QD=21.78;ReadPosRankSum=2.286;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:3310,340,0 chrXIII 194436 . A G 3761.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3761,393,0 chrXIII 194614 . T C 4047.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4047,403,0 chrXIII 195045 . C A 4393.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.82;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4393,439,0 chrXIII 195227 . A G 4388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=176;Dels=0.00;FS=10.793;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.259;QD=24.93;ReadPosRankSum=2.960;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:3,172:176:99:4388,445,0 chrXIII 195282 . A G 3998.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.99;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3998,406,0 chrXIII 195330 . C A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=26.30;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3445,346,0 chrXIII 195360 . T C 3145 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=24.19;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3178,325,0 chrXIII 195417 . T C 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=3.036;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=0.861;QD=20.37;ReadPosRankSum=1.691;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3422,355,0 chrXIII 195423 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.71;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3603,355,0 chrXIII 195744 . T C 2994 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.23;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3027,312,0 chrXIII 195860 . A T 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=-0.334;QD=20.54;ReadPosRankSum=1.700;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2272,228,0 chrXIII 195862 . G T 2224 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=20.79;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2257,225,0 chrXIII 195938 . A G 1913 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.74;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1946,198,0 chrXIII 195968 . G A 2414 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=21.8740;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.56;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2447,238,0 chrXIII 195989 . G A 2606 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=23.27;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2639,262,0 chrXIII 196113 . T C 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.5080;MLEAC=2;MLEAF=1.00;MQ=42.95;MQ0=0;MQRankSum=0.000;QD=21.29;ReadPosRankSum=1.696;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2077,207,0 chrXIII 196123 . A G 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=3.802;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;MQRankSum=-0.825;QD=22.94;ReadPosRankSum=1.650;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1960,195,0 chrXIII 196201 . A G 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.5162;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=-0.514;QD=21.46;ReadPosRankSum=1.570;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2780,285,0 chrXIII 196246 . C T 3988.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=25.08;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3988,394,0 chrXIII 202191 . C A 36.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=0.59;SB=-2.298e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:9:69,9,0 chrXIII 202192 . T G 14.28 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.485;DP=65;Dels=0.00;FS=13.358;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=28.85;MQ0=0;MQRankSum=1.860;QD=0.22;ReadPosRankSum=0.954;SB=-3.124e+00 GT:AD:DP:GQ:PL 0/1:3,62:65:13:44,0,13 chrXIII 202197 . T C 181.19 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.046;DP=80;Dels=0.00;FS=8.379;HaplotypeScore=4.6823;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;MQRankSum=1.957;QD=2.26;ReadPosRankSum=-0.077;SB=-1.212e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:8:213,8,0 chrXIII 202206 . T C 396.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.123;DP=90;Dels=0.00;FS=6.017;HaplotypeScore=3.7089;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;MQRankSum=-0.014;QD=4.40;ReadPosRankSum=1.273;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:29:429,29,0 chrXIII 202207 . T A 404.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.642;DP=94;Dels=0.00;FS=5.300;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=30.30;MQ0=0;MQRankSum=-0.039;QD=4.30;ReadPosRankSum=1.271;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:29:437,29,0 chrXIII 202222 . A C 834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=98;Dels=0.00;FS=5.888;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=33.07;MQ0=0;MQRankSum=1.661;QD=8.51;ReadPosRankSum=1.625;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:90:867,90,0 chrXIII 202482 . A G 1736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=1.628;QD=21.70;ReadPosRankSum=2.387;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:2,76:80:99:1769,180,0 chrXIII 202531 . T C 2047 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.37;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2080,213,0 chrXIII 203104 . C T 5126.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.71;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5126,511,0 chrXIII 207607 . A C 4454.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4454,466,0 chrXIII 207757 . A G 4022.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.12;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4022,412,0 chrXIII 209014 . G A 205.03 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;QD=20.50;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:24:238,24,0 chrXIII 209233 . C T 1188 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.40;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1221,123,0 chrXIII 212452 . T A 1683 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.89;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1716,174,0 chrXIII 212859 . T C 7637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=22.0648;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.679;QD=25.80;ReadPosRankSum=1.720;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:1,295:296:99:7637,781,0 chrXIII 213955 . A G 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-1.714;QD=20.71;ReadPosRankSum=1.714;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:1,188:193:99:3997,409,0 chrXIII 213972 . G A 4275.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.27;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4275,424,0 chrXIII 214086 . C T 3887.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.7555;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.61;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,230:234:99:3887,379,0 chrXIII 215334 . T C 4499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.306;QD=24.06;ReadPosRankSum=1.714;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4499,472,0 chrXIII 215544 . C T 5141.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.9110;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.72;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5141,511,0 chrXIII 215595 . T C 5511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.1939;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.640;QD=24.71;ReadPosRankSum=1.701;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:1,221:223:99:5511,574,0 chrXIII 216027 . C T 5644.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=18.3439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-2.965e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5644,565,0 chrXIII 217030 . T G 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=117;Dels=0.00;FS=3.848;HaplotypeScore=4.8128;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.912;QD=23.88;ReadPosRankSum=1.702;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,113:117:99:2827,291,0 chrXIII 217356 . C G 5339.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.67;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5339,538,0 chrXIII 218882 . T C 3380.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.24;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3380,343,0 chrXIII 219326 . G A 5306.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.3824;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5306,526,0 chrXIII 220725 . A G 4695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.141;DP=211;Dels=0.00;FS=2.407;HaplotypeScore=21.8359;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.246;QD=22.25;ReadPosRankSum=3.418;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:4,204:210:99:4695,484,0 chrXIII 220830 . C T 5994.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=15.1362;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.73;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5994,592,0 chrXIII 220900 . G A 5647.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.99;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:5647,586,0 chrXIII 223396 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.68;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3651,361,0 chrXIII 223427 . A T 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.124;DP=151;Dels=0.00;FS=2.970;HaplotypeScore=8.1259;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.285;QD=23.21;ReadPosRankSum=2.043;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3504,340,0 chrXIII 223463 . T A 4443.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.10;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4443,448,0 chrXIII 223500 . C T 4407.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.82;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4407,442,0 chrXIII 224221 . C T 2978 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.6493;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=24.21;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:3011,298,0 chrXIII 224225 . T A 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=122;Dels=0.00;FS=3.045;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-0.998;QD=24.17;ReadPosRankSum=2.369;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2982,292,0 chrXIII 224339 . A G 2543 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.77;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2576,264,0 chrXIII 224490 . G C 2684 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=26.84;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2717,285,0 chrXIII 225178 . T C 5331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=218;Dels=0.00;FS=8.923;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=1.929;QD=24.45;ReadPosRankSum=2.427;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:2,215:218:99:5331,544,0 chrXIII 225252 . A G 5758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-0.645;QD=19.79;ReadPosRankSum=2.433;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:2,289:291:99:5758,592,0 chrXIII 225259 . T C 5840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=297;Dels=0.00;FS=16.016;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-1.031;QD=19.66;ReadPosRankSum=2.976;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:3,292:297:99:5840,604,0 chrXIII 225416 . T C 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=3.282;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;MQRankSum=-0.997;QD=23.62;ReadPosRankSum=1.706;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3151,324,0 chrXIII 225438 . T C 2604 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;QD=21.52;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2637,276,0 chrXIII 225447 . C T 2748 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=21.98;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2781,276,0 chrXIII 225572 . C T 2438 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=37.61;MQ0=0;QD=15.53;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:2471,252,0 chrXIII 225581 . T C 1024 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.112;DP=148;Dels=0.00;FS=20.704;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=34.52;MQ0=0;MQRankSum=-2.938;QD=6.92;ReadPosRankSum=3.210;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:4,144:148:54:1057,54,0 chrXIII 225582 . G T 1140 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.03;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=0;QD=7.81;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1173,152,0 chrXIII 225586 . G A 1953 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=33.61;MQ0=0;QD=11.35;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,168:172:99:1986,219,0 chrXIII 225614 . G A 3615.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.1649;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=0;QD=17.99;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:3615,358,0 chrXIII 225656 . A G 4461.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.45;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4461,457,0 chrXIII 225802 . C T 5367.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=25.56;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:5367,535,0 chrXIII 225831 . A G 5713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=238;Dels=0.00;FS=2.611;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;MQRankSum=0.451;QD=24.00;ReadPosRankSum=2.429;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:2,235:238:99:5713,598,0 chrXIII 226024 . C T 4075.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=26.12;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4075,403,0 chrXIII 226048 . A G 3943.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=25.77;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3943,400,0 chrXIII 226071 . G A 3548.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=23.19;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3548,361,0 chrXIII 226093 . G A 2954 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.88;MQ0=0;QD=19.69;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2987,292,0 chrXIII 226121 . C A 2360 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;QD=16.62;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2393,237,0 chrXIII 226133 . C T 2234 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.88;MQ0=0;QD=15.62;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:2267,222,0 chrXIII 226142 . A G 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.397;DP=144;Dels=0.00;FS=9.185;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;MQRankSum=-2.810;QD=14.60;ReadPosRankSum=3.397;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:4,139:144:99:2135,216,0 chrXIII 226149 . T C 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=145;Dels=0.00;FS=6.358;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;MQRankSum=-1.382;QD=14.74;ReadPosRankSum=2.382;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2170,225,0 chrXIII 226181 . C T 2748 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=17.96;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2781,274,0 chrXIII 226649 . T C 980 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=8;QD=16.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1013,105,0 chrXIII 226661 . T C 905 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=7;QD=16.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:938,102,0 chrXIII 226664 . C T 1033 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=7;QD=17.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1066,105,0 chrXIII 226822 . A T 584 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=26.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:63:617,63,0 chrXIII 226951 . T C 1369 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=27.94;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1402,141,0 chrXIII 227065 . C T 3544.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=24.27;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3544,369,0 chrXIII 227084 . C T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=25.18;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3752,364,0 chrXIII 227257 . C T 4732.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.2093;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=25.04;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4732,469,0 chrXIII 227342 . A G 4914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.467;DP=196;Dels=0.00;FS=5.825;HaplotypeScore=10.8449;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.800;QD=25.07;ReadPosRankSum=2.441;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:4914,496,0 chrXIII 227660 . T C 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=147;Dels=0.00;FS=6.105;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.829;QD=25.10;ReadPosRankSum=2.952;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3689,387,0 chrXIII 227957 . G A 2021 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=20.62;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2054,207,0 chrXIII 227971 . G A 2098 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=20.77;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2131,213,0 chrXIII 227975 . T G 2030 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=21.37;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2063,207,0 chrXIII 227978 . G A 1989 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=20.51;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2022,213,0 chrXIII 228065 . G A 2721 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.6342;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.06;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2754,276,0 chrXIII 228183 . C T 1455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.376;DP=107;Dels=0.00;FS=5.109;HaplotypeScore=8.4287;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;MQRankSum=0.016;QD=13.60;ReadPosRankSum=1.603;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1488,177,0 chrXIII 228217 . C T 2593 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=19.95;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2626,261,0 chrXIII 228514 . G A 3908.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.27;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3908,388,0 chrXIII 228927 . C A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.10;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3288,334,0 chrXIII 229206 . G A 4815.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.69;SB=-2.864e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4815,469,0 chrXIII 229364 . A G 4900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.275;QD=24.87;ReadPosRankSum=1.697;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4900,493,0 chrXIII 229786 . C T 2804 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.5900;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.38;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2837,286,0 chrXIII 230652 . G A 7140.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=11.0233;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=26.84;SB=-3.024e+03 GT:AD:DP:GQ:PL 1/1:0,263:266:99:7140,718,0 chrXIII 230823 . C T 5114.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.3369;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.04;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:5114,505,0 chrXIII 230928 . A G 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=0.199;QD=22.65;ReadPosRankSum=1.694;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4145,421,0 chrXIII 230942 . C T 4030.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.4504;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=22.39;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4030,415,0 chrXIII 230978 . G A 3548.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.9834;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=20.63;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3548,352,0 chrXIII 230996 . C T 3329.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.0613;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=20.94;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3329,334,0 chrXIII 231292 . A G 4803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=214;Dels=0.00;FS=2.532;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.056;QD=22.44;ReadPosRankSum=2.892;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:3,211:214:99:4803,481,0 chrXIII 231382 . A G 4265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.626;DP=198;Dels=0.00;FS=11.900;HaplotypeScore=8.1639;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-2.556;QD=21.54;ReadPosRankSum=3.810;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:5,191:198:99:4265,445,0 chrXIII 231391 . A C 4625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.4300;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.139;QD=22.56;ReadPosRankSum=1.715;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:1,199:205:99:4625,484,0 chrXIII 231506 . C T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=18.1963;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.15;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3571,358,0 chrXIII 231733 . T G 5525.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.8596;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.58;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5525,592,0 chrXIII 232016 . A C 3172 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.50;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3205,333,0 chrXIII 232186 . C T 3047 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=25.61;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3080,307,0 chrXIII 232414 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9042;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=24.96;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3445,363,0 chrXIII 232427 . T C 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.7124;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.648;QD=24.39;ReadPosRankSum=1.709;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3585,364,0 chrXIII 232662 . C T 4515.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.4988;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=25.22;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4515,454,0 chrXIII 232771 . A G 5293.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.60;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5293,550,0 chrXIII 232832 . C T 5480.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.6935;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=27.13;SB=-2.907e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5480,538,0 chrXIII 233147 . A G 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.163;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.9882;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.297;QD=21.39;ReadPosRankSum=2.409;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2600,273,0 chrXIII 233569 . A G 4403.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.8488;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=26.52;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4403,451,0 chrXIII 233610 . C T 3413.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.45;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3413,337,0 chrXIII 233612 . G A 3301.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=21.30;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3301,334,0 chrXIII 233723 . C A 5037.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.7543;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.65;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5037,490,0 chrXIII 233936 . G A 4819.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.23;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4819,478,0 chrXIII 234329 . C T 4676.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.61;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4676,457,0 chrXIII 234471 . T C 1851 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6732;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.04;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1884,195,0 chrXIII 234542 . T A 1428 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=24.20;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1461,144,0 chrXIII 234544 . T A 1358 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.26;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1391,135,0 chrXIII 234644 . A G 604 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=20.83;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,28:29:66:637,66,0 chrXIII 235023 . A G 5043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.661;QD=25.86;ReadPosRankSum=1.714;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:5043,517,0 chrXIII 235149 . T C 6068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=15.8397;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.728;QD=24.97;ReadPosRankSum=1.718;SB=-3.197e+03 GT:AD:DP:GQ:PL 1/1:1,237:243:99:6068,634,0 chrXIII 235288 . T C 6934.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=20.8161;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.08;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:0,284:288:99:6934,727,0 chrXIII 235377 . T C 7246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=291;Dels=0.00;FS=3.023;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.620;QD=24.90;ReadPosRankSum=2.365;SB=-3.869e+03 GT:AD:DP:GQ:PL 1/1:2,289:291:99:7246,742,0 chrXIII 235419 . C T 7263.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=14.7745;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.76;SB=-3.868e+03 GT:AD:DP:GQ:PL 1/1:0,282:282:99:7263,724,0 chrXIII 235455 . G A 7382.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=22.7353;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.52;SB=-4.348e+03 GT:AD:DP:GQ:PL 1/1:0,338:343:99:7382,792,0 chrXIII 235548 . T A 9753.01 filter AC=2;AF=1.00;AN=2;DP=363;Dels=0.00;FS=0.000;HaplotypeScore=24.1380;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=26.87;SB=-5.205e+03 GT:AD:DP:GQ:PL 1/1:0,363:363:99:9753,962,0 chrXIII 235740 . A G 7088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-1.322;QD=22.08;ReadPosRankSum=1.721;SB=-3.148e+03 GT:AD:DP:GQ:PL 1/1:1,320:321:99:7088,724,0 chrXIII 235787 . C T 4994.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.0845;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.34;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,231:234:99:4994,505,0 chrXIII 235798 . G A 5382.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.71;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5382,514,0 chrXIII 236124 . G C 2767 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=23.65;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2800,288,0 chrXIII 236156 . A G 2800 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=26.92;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2833,291,0 chrXIII 236312 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.363;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=1.585;QD=22.73;ReadPosRankSum=1.683;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3262,328,0 chrXIII 236318 . A C 3035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=-1.308;QD=21.83;ReadPosRankSum=1.707;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3068,313,0 chrXIII 236370 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;QD=14.57;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2117,210,0 chrXIII 236387 . T A 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.142;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=0;MQRankSum=0.879;QD=15.99;ReadPosRankSum=1.680;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2175,213,0 chrXIII 236390 . C A 2197 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=16.40;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2230,222,0 chrXIII 236398 . T C 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.108;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;MQRankSum=-0.629;QD=16.29;ReadPosRankSum=1.706;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2232,225,0 chrXIII 236403 . T A 2231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;MQRankSum=-1.044;QD=16.40;ReadPosRankSum=1.707;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2264,225,0 chrXIII 236833 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5540;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.99;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3056,307,0 chrXIII 237159 . T C 3838.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.8823;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.45;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3838,405,0 chrXIII 237477 . T C 3957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.9834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.874;QD=25.37;ReadPosRankSum=2.339;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3957,406,0 chrXIII 237965 . A G 5185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=203;Dels=0.00;FS=3.032;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.434;QD=25.54;ReadPosRankSum=2.425;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:3,199:203:99:5185,526,0 chrXIII 238236 . T C 1741 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=22.04;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1774,186,0 chrXIII 238290 . T C 1328 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.33;MQ0=0;QD=21.77;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1361,138,0 chrXIII 238291 . G A 1372 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.33;MQ0=0;QD=22.49;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1405,138,0 chrXIII 238380 . A G 1197 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.00;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,54:57:99:1230,132,0 chrXIII 238422 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.95;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2229,222,0 chrXIII 238751 . A G 967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=19.8261;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.624;QD=12.09;ReadPosRankSum=2.386;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:2,77:80:99:1000,105,0 chrXIII 239384 . A G 254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;MQRankSum=-1.575;QD=3.79;ReadPosRankSum=1.680;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:30:287,30,0 chrXIII 239557 . C T 3830.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=26.78;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3830,379,0 chrXIII 239731 . A G 4891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=210;Dels=0.00;FS=3.021;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.509;QD=23.29;ReadPosRankSum=2.414;SB=-2.910e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4891,496,0 chrXIII 239887 . T C 4111.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.62;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4111,427,0 chrXIII 240460 . C T 981 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:99:1014,99,0 chrXIII 240559 . T A 1488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.733;QD=21.26;ReadPosRankSum=3.277;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:4,66:70:99:1521,156,0 chrXIII 240594 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.3613;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.272;QD=26.48;ReadPosRankSum=2.369;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:2,120:122:99:3263,337,0 chrXIII 241006 . A G 6797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=13.5052;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.350;QD=23.36;ReadPosRankSum=1.720;SB=-3.509e+03 GT:AD:DP:GQ:PL 1/1:1,289:291:99:6797,700,0 chrXIII 241279 . A T 5895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.493;QD=25.41;ReadPosRankSum=1.657;SB=-3.241e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5895,583,0 chrXIII 241545 . G C 1908 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1941,207,0 chrXIII 241597 . C T 2433 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.08;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2466,240,0 chrXIII 241669 . C T 934 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=25.94;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:96:967,96,0 chrXIII 241788 . C T 76.51 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=67.64;MQ0=0;QD=19.13;SB=-4.875e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:12:109,12,0 chrXIII 241937 . A T 621 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.41;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:66:654,66,0 chrXIII 242258 . T A 4486.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.01;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4486,439,0 chrXIII 242415 . C T 4112.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.38;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4112,406,0 chrXIII 242460 . C T 3995.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.3480;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=25.45;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3995,409,0 chrXIII 242493 . G A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.2986;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=26.75;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3397,345,0 chrXIII 242853 . G A 3633.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=24.38;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3633,358,0 chrXIII 242871 . A C 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=4.599;HaplotypeScore=9.7579;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-1.672;QD=21.41;ReadPosRankSum=1.712;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3747,379,0 chrXIII 242910 . C T 4471.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.1004;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.17;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4471,439,0 chrXIII 243473 . A G 6163.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.79;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:6163,628,0 chrXIII 243623 . G A 6110.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=19.1619;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.15;SB=-3.249e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:6110,604,0 chrXIII 243777 . G T 6046.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=18.6010;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.98;SB=-3.316e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:6046,604,0 chrXIII 244001 . G C 6390.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.58;SB=-3.723e+03 GT:AD:DP:GQ:PL 1/1:0,281:283:99:6390,670,0 chrXIII 244141 . A G 7330.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=18.4964;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.72;SB=-3.790e+03 GT:AD:DP:GQ:PL 1/1:0,306:309:99:7330,769,0 chrXIII 244246 . A G 6980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=289;Dels=0.00;FS=13.478;HaplotypeScore=27.1557;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.657;QD=24.15;ReadPosRankSum=3.363;SB=-3.461e+03 GT:AD:DP:GQ:PL 1/1:4,283:289:99:6980,712,0 chrXIII 244359 . C T 5356.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.9573;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.35;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5356,538,0 chrXIII 244448 . G A 5688.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=13.0509;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.30;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:5688,583,0 chrXIII 244497 . C T 6100.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.64;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,255:258:99:6100,595,0 chrXIII 244520 . G A 5246.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.33;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5246,526,0 chrXIII 244664 . C T 6780.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.28;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,255:258:99:6780,679,0 chrXIII 244883 . C T 7455.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=14.8490;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.53;SB=-3.264e+03 GT:AD:DP:GQ:PL 1/1:0,290:292:99:7455,748,0 chrXIII 245123 . A G 3915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=171;Dels=0.00;FS=8.175;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-1.303;QD=22.89;ReadPosRankSum=3.398;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:4,167:171:99:3915,400,0 chrXIII 245142 . C T 4044.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.98;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4044,400,0 chrXIII 245312 . C T 4054.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=26.15;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4054,415,0 chrXIII 245459 . G A 4828.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=25.02;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4828,481,0 chrXIII 245572 . C T 5183.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=19.8694;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.87;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5183,529,0 chrXIII 245624 . C T 6350.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=21.38;SB=-3.204e+03 GT:AD:DP:GQ:PL 1/1:0,297:297:99:6350,625,0 chrXIII 245628 . A G 6050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=310;Dels=0.00;FS=8.755;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=0.253;QD=19.52;ReadPosRankSum=2.425;SB=-3.110e+03 GT:AD:DP:GQ:PL 1/1:2,304:310:99:6050,622,0 chrXIII 245654 . C T 6250.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=19.41;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:0,322:322:99:6250,625,0 chrXIII 245675 . T G 5403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=13.0558;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-1.490;QD=17.89;ReadPosRankSum=1.709;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:1,299:302:99:5403,577,0 chrXIII 246258 . C T 8321.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=21.5295;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.84;SB=-4.165e+03 GT:AD:DP:GQ:PL 1/1:0,347:349:99:8321,830,0 chrXIII 247466 . G C 1562 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.69;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1595,162,0 chrXIII 247590 . C T 5724.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=27.39;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5724,559,0 chrXIII 247727 . A T 3202 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=17.69;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3235,354,0 chrXIII 247728 . T G 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=0.034;QD=17.60;ReadPosRankSum=2.382;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3253,357,0 chrXIII 247856 . T A 9382.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=370;Dels=0.00;FS=3.429;HaplotypeScore=26.3605;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.610;QD=25.36;ReadPosRankSum=1.676;SB=-4.907e+03 GT:AD:DP:GQ:PL 1/1:1,369:370:99:9382,923,0 chrXIII 247975 . A G 9170.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=364;Dels=0.00;FS=9.656;HaplotypeScore=19.4229;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=1.245;QD=25.19;ReadPosRankSum=2.920;SB=-4.863e+03 GT:AD:DP:GQ:PL 1/1:3,361:364:99:9170,932,0 chrXIII 248110 . A T 8694.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=369;Dels=0.00;FS=3.366;HaplotypeScore=5.6310;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.559;QD=23.56;ReadPosRankSum=1.648;SB=-5.063e+03 GT:AD:DP:GQ:PL 1/1:1,368:369:99:8694,860,0 chrXIII 248123 . A C 7738.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=367;Dels=0.00;FS=6.400;HaplotypeScore=16.4997;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.909;QD=21.08;ReadPosRankSum=2.429;SB=-4.561e+03 GT:AD:DP:GQ:PL 1/1:2,361:367:99:7738,811,0 chrXIII 248171 . C T 6662.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=18.7993;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=18.87;SB=-4.341e+03 GT:AD:DP:GQ:PL 1/1:0,351:353:99:6662,673,0 chrXIII 248618 . G C 1961 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.1102;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.43;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1994,204,0 chrXIII 248627 . G A 1735 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=20.17;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1768,174,0 chrXIII 248645 . A G 1687 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=19.39;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1720,180,0 chrXIII 249138 . T C 4820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.172;QD=25.10;ReadPosRankSum=1.696;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4820,484,0 chrXIII 249155 . G A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.90;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4489,460,0 chrXIII 249389 . G T 5740.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=26.21;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5740,562,0 chrXIII 249476 . T C 7615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=14.2428;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.401;QD=25.81;ReadPosRankSum=1.720;SB=-3.072e+03 GT:AD:DP:GQ:PL 1/1:1,292:295:99:7615,784,0 chrXIII 250460 . C T 10635.01 filter AC=2;AF=1.00;AN=2;DP=464;Dels=0.00;FS=0.000;HaplotypeScore=36.9147;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.92;SB=-5.534e+03 GT:AD:DP:GQ:PL 1/1:0,461:464:99:10635,1108,0 chrXIII 251233 . T G 4071.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.4919;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.98;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4071,415,0 chrXIII 251274 . A C 4101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=4.295;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.605;QD=24.85;ReadPosRankSum=1.711;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:4101,418,0 chrXIII 251543 . A C 4762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=193;Dels=0.00;FS=5.577;HaplotypeScore=8.7032;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-1.099;QD=24.67;ReadPosRankSum=2.964;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:4762,481,0 chrXIII 251607 . T C 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=175;Dels=0.00;FS=9.950;HaplotypeScore=5.0734;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;MQRankSum=-1.088;QD=19.85;ReadPosRankSum=0.091;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3473,355,0 chrXIII 251609 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=179;Dels=0.00;FS=2.582;HaplotypeScore=4.2412;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;MQRankSum=1.388;QD=18.04;ReadPosRankSum=2.961;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:3264,339,0 chrXIII 251736 . T G 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=146;Dels=0.01;FS=7.360;HaplotypeScore=16.4165;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.674;QD=23.85;ReadPosRankSum=2.381;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3482,363,0 chrXIII 251941 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.0164;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-1.685;QD=23.85;ReadPosRankSum=-0.214;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:1,145:149:99:3553,338,0 chrXIII 252178 . G A 5063.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.4561;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.77;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5063,505,0 chrXIII 252422 . T C 4871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=205;Dels=0.00;FS=7.591;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.700;QD=23.76;ReadPosRankSum=2.425;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:2,201:205:99:4871,499,0 chrXIII 252727 . A T 6014.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=26.38;SB=-3.101e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6014,589,0 chrXIII 252757 . T C 4962.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.56;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4962,520,0 chrXIII 252877 . G A 1990 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=17.93;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2023,201,0 chrXIII 253031 . T A 871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.955;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.247;QD=17.78;ReadPosRankSum=1.520;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:93:904,93,0 chrXIII 253274 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=23.53;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3529,364,0 chrXIII 253290 . G C 3500.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=23.03;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3500,355,0 chrXIII 253309 . T C 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=184;Dels=0.00;FS=3.760;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-1.410;QD=21.14;ReadPosRankSum=1.694;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3889,397,0 chrXIII 253431 . G A 4278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.8757;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.304;QD=25.16;ReadPosRankSum=1.569;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4278,427,0 chrXIII 253470 . G A 3566.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.26;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3566,367,0 chrXIII 253616 . T C 4079.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=183;Dels=0.00;FS=6.089;HaplotypeScore=16.6370;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.533;QD=22.29;ReadPosRankSum=2.929;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:3,180:183:99:4079,418,0 chrXIII 253877 . G A 5395.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.8671;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.21;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5395,553,0 chrXIII 254048 . G A 4993.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4993,496,0 chrXIII 254293 . A T 4761.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.02;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4761,469,0 chrXIII 254427 . A G 4235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=181;Dels=0.00;FS=6.083;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.383;QD=23.40;ReadPosRankSum=2.950;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:4235,448,0 chrXIII 254807 . A G 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.460;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.114;QD=24.87;ReadPosRankSum=1.704;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:3092,313,0 chrXIII 254816 . G T 3056 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=22.98;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3089,307,0 chrXIII 255332 . C T 3962.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.46;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3962,394,0 chrXIII 255485 . T C 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=145;Dels=0.00;FS=3.020;HaplotypeScore=15.5482;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.094;QD=23.52;ReadPosRankSum=2.415;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3411,346,0 chrXIII 255554 . A G 4191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=201;Dels=0.00;FS=6.822;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-0.611;QD=20.85;ReadPosRankSum=2.363;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:4191,433,0 chrXIII 255569 . A G 4605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=216;Dels=0.00;FS=3.502;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-0.701;QD=21.32;ReadPosRankSum=1.700;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4605,472,0 chrXIII 255602 . T C 4399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=205;Dels=0.00;FS=9.420;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.907;QD=21.46;ReadPosRankSum=2.936;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:3,202:205:99:4399,457,0 chrXIII 256812 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.4672;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.91;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2780,282,0 chrXIII 256814 . A G 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.758;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.316;QD=19.65;ReadPosRankSum=2.743;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2725,282,0 chrXIII 257082 . A C 3644.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=24.96;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3644,379,0 chrXIII 257100 . T C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=146;Dels=0.00;FS=3.024;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-0.161;QD=22.81;ReadPosRankSum=2.399;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3330,351,0 chrXIII 257756 . G A 4000.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4000,397,0 chrXIII 257811 . G A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.60;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4109,418,0 chrXIII 258020 . C G 3359.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.7705;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.17;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3359,343,0 chrXIII 259069 . A G 4004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.978;DP=163;Dels=0.00;FS=6.429;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.521;QD=24.56;ReadPosRankSum=4.137;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:6,156:163:99:4004,403,0 chrXIII 259259 . T G 2624 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=23.22;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2657,270,0 chrXIII 259265 . C T 2712 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=23.58;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2745,271,0 chrXIII 259267 . G A 2555 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=23.02;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2588,261,0 chrXIII 259663 . T C 3473.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.5945;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3473,358,0 chrXIII 260334 . T C 3492.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.45;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3492,358,0 chrXIII 260437 . G A 3371.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.91;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3371,345,0 chrXIII 260462 . A G 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=1.415;QD=22.59;ReadPosRankSum=1.646;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2744,282,0 chrXIII 260580 . T C 5179.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.31;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5179,544,0 chrXIII 260820 . G A 5840.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=17.6505;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.33;SB=-3.289e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5840,577,0 chrXIII 261191 . A G 4085.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.0311;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.53;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4085,424,0 chrXIII 261255 . A G 3697.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.11;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3697,376,0 chrXIII 261722 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3117,324,0 chrXIII 261864 . A G 4062.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.0791;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.71;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:4062,427,0 chrXIII 262071 . G T 4335.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=25.35;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:4335,427,0 chrXIII 262219 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.18;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3430,337,0 chrXIII 262578 . G A 3473.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.70;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3473,346,0 chrXIII 262580 . T C 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=155;Dels=0.00;FS=5.287;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.954;QD=21.70;ReadPosRankSum=2.928;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3363,343,0 chrXIII 262749 . T C 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.2908;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.185;QD=22.93;ReadPosRankSum=1.393;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:4150,424,0 chrXIII 262788 . T C 4254.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.3078;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=23.37;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4254,436,0 chrXIII 262820 . G C 4118.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=23.94;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4118,430,0 chrXIII 262904 . G A 3161 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=23.59;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3194,310,0 chrXIII 262915 . T A 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=137;Dels=0.00;FS=7.975;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.170;QD=22.18;ReadPosRankSum=2.378;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3071,310,0 chrXIII 262958 . G A 3065 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.89;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3098,315,0 chrXIII 263216 . A G 2340 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.7364;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.35;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2373,240,0 chrXIII 263244 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=20.26;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2404,237,0 chrXIII 263341 . C T 1793 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=20.85;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1826,180,0 chrXIII 263467 . T C 2791 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.84;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2824,288,0 chrXIII 264400 . A G 4242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=166;Dels=0.00;FS=8.636;HaplotypeScore=11.6878;MLEAC=2;MLEAF=1.00;MQ=60.91;MQ0=0;MQRankSum=1.985;QD=25.55;ReadPosRankSum=2.405;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:4242,439,0 chrXIII 264463 . T C 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4841;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.544;QD=25.12;ReadPosRankSum=1.656;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3442,352,0 chrXIII 264816 . A G 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.211;QD=23.29;ReadPosRankSum=1.706;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3154,322,0 chrXIII 264995 . A C 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=130;Dels=0.00;FS=3.044;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.542;QD=24.44;ReadPosRankSum=2.374;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3210,328,0 chrXIII 265689 . T C 4772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=193;Dels=0.00;FS=6.180;HaplotypeScore=11.9113;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.203;QD=24.73;ReadPosRankSum=2.411;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4772,487,0 chrXIII 266166 . G A 1709 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.41;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1742,174,0 chrXIII 266327 . C A 2763 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.83;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2796,274,0 chrXIII 266878 . T A 846 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.26;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:90:879,90,0 chrXIII 267659 . C T 1436 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1469,150,0 chrXIII 267926 . T A 404 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=23.76;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:42:437,42,0 chrXIII 267945 . T C 302 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.13;SB=-1.749e+02 GT:AD:DP:GQ:PL 1/1:0,13:15:33:335,33,0 chrXIII 268003 . A G 322 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.00;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,13:14:36:355,36,0 chrXIII 268043 . C T 333 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=25.62;SB=-3.200e+01 GT:AD:DP:GQ:PL 1/1:0,12:13:36:366,36,0 chrXIII 268317 . T C 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.730;DP=71;Dels=0.00;FS=2.617;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-1.358;QD=23.04;ReadPosRankSum=2.901;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:99:1669,171,0 chrXIII 268353 . G A 2393 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.42;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2426,246,0 chrXIII 268453 . A G 1823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=3.951;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.292;QD=23.68;ReadPosRankSum=1.687;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1856,189,0 chrXIII 268510 . A G 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.8866;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.230;QD=25.54;ReadPosRankSum=1.682;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1795,180,0 chrXIII 268600 . C G 3304.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=25.61;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:3304,334,0 chrXIII 268621 . T A 3096 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=26.24;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3129,307,0 chrXIII 268655 . G A 2300 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=4.4205;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=22.33;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2333,228,0 chrXIII 268659 . A G 2113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=102;Dels=0.00;FS=6.023;HaplotypeScore=5.2092;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=0.891;QD=20.72;ReadPosRankSum=2.852;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:3,99:102:99:2146,225,0 chrXIII 268760 . A C 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.353;QD=21.26;ReadPosRankSum=1.590;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1585,162,0 chrXIII 270321 . A G 4434.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.39;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4434,469,0 chrXIII 270930 . T C 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=3.064;HaplotypeScore=4.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.78;ReadPosRankSum=1.711;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4014,426,0 chrXIII 271064 . T C 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=3.157;HaplotypeScore=11.7917;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.447;QD=23.36;ReadPosRankSum=1.686;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3528,364,0 chrXIII 271498 . G A 2674 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2707,273,0 chrXIII 271602 . G C 2843 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=16.2347;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.70;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2876,294,0 chrXIII 271672 . A C 3514.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.65;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3514,355,0 chrXIII 271938 . A G 4276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=4.355;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.625;QD=25.30;ReadPosRankSum=1.691;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4276,427,0 chrXIII 272495 . G A 5896.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=12.7224;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.49;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5896,592,0 chrXIII 272743 . G A 1923 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=76.5505;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=19.04;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1956,204,0 chrXIII 272746 . T C 1864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=77.4009;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=-2.259;QD=19.22;ReadPosRankSum=3.311;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:4,93:97:99:1897,195,0 chrXIII 272852 . T C 1786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=73;Dels=0.00;FS=3.051;HaplotypeScore=9.3868;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.956;QD=24.47;ReadPosRankSum=2.311;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:2,69:73:99:1819,189,0 chrXIII 272987 . G T 1797 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=26.43;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1830,177,0 chrXIII 273113 . A C 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=0.933;QD=22.58;ReadPosRankSum=2.400;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:2,97:101:99:2314,237,0 chrXIII 273116 . A C 2176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=3.245;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.857;QD=22.91;ReadPosRankSum=1.696;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2209,219,0 chrXIII 273179 . A G 1690 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.84;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1723,174,0 chrXIII 273245 . G A 3207 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=25.86;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3240,319,0 chrXIII 273267 . C T 2893 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.78;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2926,309,0 chrXIII 273288 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.8156;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.53;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2974,306,0 chrXIII 273333 . T C 2303 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=24.24;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2336,240,0 chrXIII 273468 . C G 2598 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.83;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2631,279,0 chrXIII 273484 . T C 2685 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.4770;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.97;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2718,276,0 chrXIII 274088 . C T 4180.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=23.35;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4180,421,0 chrXIII 274105 . G A 4200.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8932;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=23.46;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4200,412,0 chrXIII 274143 . A G 3505.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.7499;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.24;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3505,369,0 chrXIII 274730 . A G 5251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=200;Dels=0.00;FS=17.652;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.776;QD=26.26;ReadPosRankSum=3.390;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:4,195:200:99:5251,553,0 chrXIII 274880 . T C 3924.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.0755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3924,406,0 chrXIII 274946 . T C 4206.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.5052;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4206,433,0 chrXIII 275441 . A G 3913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=156;Dels=0.00;FS=7.888;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.213;QD=25.08;ReadPosRankSum=2.385;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:2,151:156:99:3913,406,0 chrXIII 275717 . T A 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=1.557;QD=26.58;ReadPosRankSum=1.703;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3196,319,0 chrXIII 275773 . T C 2558 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=20.97;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2591,264,0 chrXIII 275774 . T C 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.11;MQ0=0;MQRankSum=0.501;QD=20.94;ReadPosRankSum=1.703;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2588,264,0 chrXIII 275790 . A G 2057 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=0;QD=17.89;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2090,216,0 chrXIII 275822 . C T 1090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.247;QD=11.12;ReadPosRankSum=-0.247;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1123,111,0 chrXIII 275831 . A G 943 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.98;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:976,99,0 chrXIII 275836 . G A 848 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.43;MQ0=0;QD=7.78;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:90:881,90,0 chrXIII 275847 . T C 1145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.364;DP=130;Dels=0.00;FS=5.007;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=34.05;MQ0=0;MQRankSum=-3.013;QD=8.81;ReadPosRankSum=3.391;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:4,126:130:99:1178,123,0 chrXIII 275851 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.16;MQ0=0;QD=7.93;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1128,117,0 chrXIII 275891 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=17.90;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3348,340,0 chrXIII 275910 . C G 4056.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=17.95;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4056,429,0 chrXIII 275928 . T C 4841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=12.2696;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=0.526;QD=20.87;ReadPosRankSum=2.428;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:2,229:232:99:4841,496,0 chrXIII 276220 . T C 6310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=321;Dels=0.00;FS=9.461;HaplotypeScore=16.1633;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=0.832;QD=19.66;ReadPosRankSum=2.404;SB=-2.956e+03 GT:AD:DP:GQ:PL 1/1:2,318:321:99:6310,673,0 chrXIII 276222 . T C 6458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=326;Dels=0.01;FS=4.744;HaplotypeScore=16.9085;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=0.689;QD=19.81;ReadPosRankSum=1.700;SB=-2.996e+03 GT:AD:DP:GQ:PL 1/1:1,321:323:99:6458,652,0 chrXIII 276641 . C T 4265.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.8511;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.69;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4265,436,0 chrXIII 276727 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=24.24;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3708,367,0 chrXIII 276740 . A G 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=156;Dels=0.00;FS=3.037;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.309;QD=21.43;ReadPosRankSum=2.418;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3343,348,0 chrXIII 276755 . C A 3650.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=22.53;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3650,370,0 chrXIII 276983 . A G 4492.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.3984;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=24.15;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4492,472,0 chrXIII 277019 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6168;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.05;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3412,351,0 chrXIII 277070 . T C 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=134;Dels=0.00;FS=5.006;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.951;QD=23.50;ReadPosRankSum=1.628;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3182,327,0 chrXIII 277164 . A G 4130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=167;Dels=0.00;FS=2.674;HaplotypeScore=11.8043;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.729;QD=24.73;ReadPosRankSum=2.405;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4130,427,0 chrXIII 277293 . T G 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=1.023;QD=25.75;ReadPosRankSum=1.649;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:2170,228,0 chrXIII 277367 . C T 2533 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.3323;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.08;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2566,252,0 chrXIII 277529 . G A 3176 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=13.4701;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.41;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3209,316,0 chrXIII 277591 . A G 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=4.806;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.123;QD=25.83;ReadPosRankSum=1.705;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3280,342,0 chrXIII 277897 . T A 6066.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=27.45;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6066,595,0 chrXIII 278376 . T C 6643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=16.0676;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.296;QD=22.99;ReadPosRankSum=1.684;SB=-3.336e+03 GT:AD:DP:GQ:PL 1/1:1,285:289:99:6643,694,0 chrXIII 278550 . C G 6969.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.20;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:6969,721,0 chrXIII 279103 . A G 6749.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=18.7558;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.93;SB=-3.117e+03 GT:AD:DP:GQ:PL 1/1:0,280:282:99:6749,691,0 chrXIII 279388 . T C 9285.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=388;Dels=0.00;FS=10.446;HaplotypeScore=16.6521;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.984;QD=23.93;ReadPosRankSum=2.411;SB=-3.251e+03 GT:AD:DP:GQ:PL 1/1:2,384:388:99:9285,970,0 chrXIII 279616 . C T 4942.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.29;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4942,490,0 chrXIII 279667 . G A 3925.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.7599;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.82;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3925,403,0 chrXIII 279942 . A G 5089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=209;Dels=0.00;FS=10.285;HaplotypeScore=13.8728;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.930;QD=24.35;ReadPosRankSum=2.391;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:2,206:209:99:5089,544,0 chrXIII 280278 . C T 4160.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4160,421,0 chrXIII 280719 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=263;Dels=0.00;FS=3.576;HaplotypeScore=239.5737;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;MQRankSum=-1.045;QD=12.80;ReadPosRankSum=1.679;SB=-3.291e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:3366,372,0 chrXIII 281241 . A G 6537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=260;Dels=0.00;FS=3.288;HaplotypeScore=23.3629;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.336;QD=25.14;ReadPosRankSum=1.692;SB=-3.428e+03 GT:AD:DP:GQ:PL 1/1:2,257:260:99:6537,658,0 chrXIII 281820 . T C 5187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=217;Dels=0.00;FS=2.973;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.707;QD=23.90;ReadPosRankSum=2.336;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:5187,520,0 chrXIII 281871 . A C 5475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.3694;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.818;QD=23.30;ReadPosRankSum=1.703;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5475,553,0 chrXIII 282022 . T C 7892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.353;DP=322;Dels=0.00;FS=5.215;HaplotypeScore=29.0320;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.098;QD=24.51;ReadPosRankSum=3.434;SB=-3.348e+03 GT:AD:DP:GQ:PL 1/1:4,317:322:99:7892,808,0 chrXIII 282531 . C T 5037.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=25.96;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:5037,499,0 chrXIII 282723 . A G 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=167;Dels=0.00;FS=6.095;HaplotypeScore=10.0323;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-1.488;QD=24.82;ReadPosRankSum=2.874;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:4145,424,0 chrXIII 282738 . G A 3925.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5454;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=25.16;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3925,397,0 chrXIII 283144 . A G 4494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=186;Dels=0.00;FS=6.078;HaplotypeScore=14.8310;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.126;QD=24.16;ReadPosRankSum=2.962;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:3,181:186:99:4494,469,0 chrXIII 283179 . C T 4468.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.2991;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=25.10;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4468,439,0 chrXIII 283368 . T C 2978 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.8737;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=22.56;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3011,306,0 chrXIII 283371 . C T 2982 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.5565;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=22.59;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3015,301,0 chrXIII 283596 . C G 2063 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=23.44;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2096,210,0 chrXIII 283603 . C T 2329 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=25.32;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2362,231,0 chrXIII 283900 . T C 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=157;Dels=0.00;FS=2.945;HaplotypeScore=9.5801;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.900;QD=23.59;ReadPosRankSum=2.403;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3703,390,0 chrXIII 284443 . T C 4554.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.30;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4554,478,0 chrXIII 284491 . C T 3947.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.0781;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.49;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3947,391,0 chrXIII 284673 . C A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.63;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3571,355,0 chrXIII 284871 . C G 1628 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1661,174,0 chrXIII 285831 . T C 1649 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.99;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1682,174,0 chrXIII 285841 . C T 1942 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=23.68;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1975,195,0 chrXIII 286123 . T C 5934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.9137;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.387;QD=26.73;ReadPosRankSum=1.716;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:5934,601,0 chrXIII 286312 . C G 4387.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.79;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4387,448,0 chrXIII 286577 . T C 3209 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.67;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3242,331,0 chrXIII 287411 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.04;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2926,286,0 chrXIII 287490 . A G 1827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.068;DP=85;Dels=0.00;FS=2.768;HaplotypeScore=13.4743;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.071;QD=21.49;ReadPosRankSum=2.391;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:2,82:85:99:1860,198,0 chrXIII 288433 . T A 5248.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.0282;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.48;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5248,538,0 chrXIII 289877 . A T 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=101;Dels=0.00;FS=4.603;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.772;QD=25.84;ReadPosRankSum=1.664;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2643,259,0 chrXIII 290396 . A G 3547.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.4539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.08;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3547,381,0 chrXIII 290445 . A G 3969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=4.663;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.965;QD=24.96;ReadPosRankSum=1.688;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3969,412,0 chrXIII 290765 . G A 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.682;DP=99;Dels=0.00;FS=3.724;HaplotypeScore=2.9919;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-1.592;QD=22.69;ReadPosRankSum=-0.787;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2279,201,0 chrXIII 290769 . T C 2202 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=24.47;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2235,231,0 chrXIII 290867 . G T 2519 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.2604;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.99;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2552,252,0 chrXIII 290911 . G T 3024 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.41;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3057,304,0 chrXIII 291003 . A G 2691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=117;Dels=0.00;FS=9.772;HaplotypeScore=5.1505;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.201;QD=23.00;ReadPosRankSum=2.407;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2724,279,0 chrXIII 291011 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.78;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2472,249,0 chrXIII 291392 . A G 4575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=7.089;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.621;QD=27.07;ReadPosRankSum=2.406;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:4575,466,0 chrXIII 291580 . G A 3980.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.03;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3980,391,0 chrXIII 291658 . C T 3540.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3540,364,0 chrXIII 291712 . G T 3683.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.9394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.12;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3683,373,0 chrXIII 291877 . T C 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=155;Dels=0.00;FS=3.024;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.309;QD=24.81;ReadPosRankSum=2.418;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3846,403,0 chrXIII 292060 . C T 3906.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.26;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3906,391,0 chrXIII 292852 . A T 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=171;Dels=0.00;FS=7.192;HaplotypeScore=17.1727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.984;QD=24.68;ReadPosRankSum=2.378;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:4221,424,0 chrXIII 292953 . G A 4407.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4407,442,0 chrXIII 293346 . A G 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8768;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.441;QD=25.77;ReadPosRankSum=1.684;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3685,379,0 chrXIII 293938 . A T 4815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=3.392;HaplotypeScore=15.5699;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.532;QD=25.34;ReadPosRankSum=1.659;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4815,475,0 chrXIII 294133 . A G 3910.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.84;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3910,409,0 chrXIII 294166 . T C 3626.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.5443;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.81;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3626,390,0 chrXIII 295343 . C T 2646 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=28.76;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2679,259,0 chrXIII 295950 . G A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.5008;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3945,388,0 chrXIII 296130 . T C 3505.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2521;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3505,361,0 chrXIII 296799 . A C 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=2.969;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.852;QD=24.64;ReadPosRankSum=2.415;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3450,358,0 chrXIII 296809 . A C 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=136;Dels=0.00;FS=5.978;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.222;QD=23.08;ReadPosRankSum=2.934;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3172,324,0 chrXIII 296838 . T C 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=129;Dels=0.00;FS=8.693;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=0.203;QD=19.42;ReadPosRankSum=2.275;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:2,125:129:99:2538,258,0 chrXIII 296848 . C G 2476 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.05;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:2509,258,0 chrXIII 297132 . C T 1884 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=24.15;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1917,192,0 chrXIII 297405 . A G 2049 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.96;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2082,213,0 chrXIII 297626 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.22;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3484,352,0 chrXIII 297840 . T A 2854 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2669;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=25.04;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2887,289,0 chrXIII 298131 . T A 2299 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.5698;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.46;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2332,231,0 chrXIII 298188 . C T 3116 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=13.9876;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.75;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3149,319,0 chrXIII 298344 . C T 2521 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.72;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2554,253,0 chrXIII 298460 . G C 2002 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2035,207,0 chrXIII 298712 . A G 4077.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.48;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4077,424,0 chrXIII 298799 . A G 4124.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.0528;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4124,421,0 chrXIII 298845 . T C 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=159;Dels=0.00;FS=6.215;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.290;QD=23.96;ReadPosRankSum=2.403;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3809,400,0 chrXIII 299524 . G A 5325.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=16.2469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5325,550,0 chrXIII 299843 . C T 5495.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=15.2851;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.64;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,219:223:99:5495,544,0 chrXIII 299947 . A T 5847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.738;DP=219;Dels=0.00;FS=11.916;HaplotypeScore=11.9337;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.532;QD=26.70;ReadPosRankSum=3.745;SB=-2.858e+03 GT:AD:DP:GQ:PL 1/1:5,214:219:99:5847,577,0 chrXIII 300324 . G C 3765.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.4901;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.83;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3765,385,0 chrXIII 300558 . G A 2735 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=24.64;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2768,276,0 chrXIII 300767 . T C 1866 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=77.0859;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.97;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1899,195,0 chrXIII 301985 . G A 4508.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.3194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4508,451,0 chrXIII 302879 . T C 3420.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.35;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3420,354,0 chrXIII 302918 . A T 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=153;Dels=0.00;FS=3.651;HaplotypeScore=17.5539;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.668;QD=22.98;ReadPosRankSum=1.642;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3516,346,0 chrXIII 303266 . A G 4841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=196;Dels=0.00;FS=13.727;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.287;QD=24.70;ReadPosRankSum=2.964;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:4841,511,0 chrXIII 304595 . T C 6889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=274;Dels=0.00;FS=5.804;HaplotypeScore=12.8260;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.789;QD=25.14;ReadPosRankSum=2.885;SB=-3.381e+03 GT:AD:DP:GQ:PL 1/1:3,268:274:99:6889,700,0 chrXIII 307796 . G A 4961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=208;Dels=0.00;FS=3.543;HaplotypeScore=17.8725;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.665;QD=23.85;ReadPosRankSum=0.833;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4961,469,0 chrXIII 308296 . T A 4578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.416;QD=25.43;ReadPosRankSum=1.674;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4578,460,0 chrXIII 308551 . C T 3170 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.81;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3203,330,0 chrXIII 309285 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.95;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2117,204,0 chrXIII 311235 . C T 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.227;QD=26.92;ReadPosRankSum=0.650;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2644,267,0 chrXIII 311833 . C T 2800 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=22.22;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2833,280,0 chrXIII 311842 . A G 2982 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=21.61;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3015,304,0 chrXIII 311868 . C T 3209 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.54;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3242,328,0 chrXIII 312074 . C A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=25.69;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3674,361,0 chrXIII 313064 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.10;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:4038,394,0 chrXIII 314771 . A G 5257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=211;Dels=0.00;FS=5.977;HaplotypeScore=13.5206;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.433;QD=24.91;ReadPosRankSum=2.929;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:3,208:211:99:5257,538,0 chrXIII 314816 . G A 3953.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.86;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3953,388,0 chrXIII 315372 . T A 4232.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.7147;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=26.78;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4232,418,0 chrXIII 315986 . G A 3315.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3315,337,0 chrXIII 317105 . A T 3744.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.30;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3744,390,0 chrXIII 318149 . T C 6636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.182;DP=267;Dels=0.00;FS=7.070;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.135;QD=24.85;ReadPosRankSum=4.436;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:7,259:267:99:6636,676,0 chrXIII 321660 . G A 2864 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.69;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2897,286,0 chrXIII 323439 . T C 3937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=3.066;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.622;QD=24.92;ReadPosRankSum=1.688;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3937,406,0 chrXIII 325905 . T A 3928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=160;Dels=0.00;FS=2.970;HaplotypeScore=16.1655;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.037;QD=24.55;ReadPosRankSum=2.388;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3928,382,0 chrXIII 327769 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.83;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3700,370,0 chrXIII 328866 . T C 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=115;Dels=0.00;FS=2.753;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.356;QD=24.70;ReadPosRankSum=2.385;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2873,297,0 chrXIII 329249 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=3.193;HaplotypeScore=9.5452;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=0.546;QD=22.86;ReadPosRankSum=1.708;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3384,352,0 chrXIII 330956 . C G 3432.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=22.43;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3432,360,0 chrXIII 330962 . T C 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.583;DP=152;Dels=0.00;FS=12.240;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.640;QD=21.17;ReadPosRankSum=3.676;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:5,146:152:99:3251,334,0 chrXIII 331532 . T C 4444.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.42;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4444,466,0 chrXIII 333449 . G A 3917.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.77;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3917,397,0 chrXIII 333904 . T C 5098.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.3361;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.56;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5098,517,0 chrXIII 334583 . G A 4480.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=15.9783;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.96;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4480,451,0 chrXIII 334830 . T G 4873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.542;QD=24.49;ReadPosRankSum=1.680;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4873,502,0 chrXIII 335404 . T A 5344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.3347;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.817;QD=25.57;ReadPosRankSum=2.391;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:5344,538,0 chrXIII 336381 . A G 5401.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=4.2973;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.33;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5401,565,0 chrXIII 336791 . G A 6451.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=18.0253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-3.181e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:6451,652,0 chrXIII 339247 . A G 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=139;Dels=0.00;FS=10.977;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.409;QD=25.56;ReadPosRankSum=2.949;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3553,361,0 chrXIII 339661 . T G 4380.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4380,454,0 chrXIII 341020 . G A 2863 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.68;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2896,289,0 chrXIII 344475 . G A 4627.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.59;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4627,463,0 chrXIII 346162 . C T 5053.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=20.9084;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.14;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5053,493,0 chrXIII 347381 . A G 6821.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=19.6356;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.51;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,300:303:99:6821,688,0 chrXIII 348457 . A G 993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.505;QD=20.69;ReadPosRankSum=1.660;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1026,108,0 chrXIII 349622 . T A 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.698;QD=25.02;ReadPosRankSum=1.612;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3603,367,0 chrXIII 349796 . G A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.5308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3309,339,0 chrXIII 350139 . C G 5018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.5310;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=1.290;QD=21.91;ReadPosRankSum=-0.588;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:1,226:229:99:5018,508,0 chrXIII 350144 . T C 4697.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.69;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:4697,496,0 chrXIII 350249 . C T 3875.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.9491;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.48;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3875,405,0 chrXIII 350290 . C T 4348.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.73;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4348,430,0 chrXIII 350323 . G A 3818.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.57;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3818,391,0 chrXIII 351168 . A G 6575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=242;Dels=0.00;FS=7.533;HaplotypeScore=13.3769;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.543;QD=27.17;ReadPosRankSum=1.718;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,237:242:99:6575,679,0 chrXIII 351723 . C A 4133.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4133,403,0 chrXIII 353259 . G A 6710.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=10.9316;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.22;SB=-3.039e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:6710,667,0 chrXIII 354349 . A G 11160.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=502;Dels=0.00;FS=3.019;HaplotypeScore=44.7313;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.988;QD=22.23;ReadPosRankSum=2.396;SB=-6.253e+03 GT:AD:DP:GQ:PL 1/1:2,498:502:99:11160,1216,0 chrXIII 354763 . G A 5313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.427;QD=23.72;ReadPosRankSum=-1.421;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:5313,532,0 chrXIII 355100 . C T 914 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:93:947,93,0 chrXIII 355589 . A G 4033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.9353;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.237;QD=25.69;ReadPosRankSum=2.387;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:4033,415,0 chrXIII 356409 . G C 2643 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.21;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2676,285,0 chrXIII 362992 . G A 4201.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=22.47;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4201,406,0 chrXIII 363454 . T C 1931 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1964,204,0 chrXIII 363595 . T C 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.099;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.267;QD=22.22;ReadPosRankSum=1.709;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3333,346,0 chrXIII 363840 . C T 4117.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.53;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4117,418,0 chrXIII 363895 . A G 4133.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.7087;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.62;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4133,436,0 chrXIII 363943 . G A 3640.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.11;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3640,367,0 chrXIII 364102 . G A 4357.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=26.57;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4357,433,0 chrXIII 364252 . G T 3825.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.91;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3825,382,0 chrXIII 364264 . C A 3989.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=24.78;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3989,391,0 chrXIII 364294 . C G 3907.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.20;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3907,414,0 chrXIII 364324 . T C 3675.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.14;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3675,385,0 chrXIII 364548 . A G 4464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.719;DP=184;Dels=0.00;FS=12.092;HaplotypeScore=19.7754;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.301;QD=24.26;ReadPosRankSum=3.779;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:5,177:184:99:4464,448,0 chrXIII 364627 . A G 4337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=212;Dels=0.00;FS=2.955;HaplotypeScore=6.0510;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=-0.214;QD=20.46;ReadPosRankSum=2.403;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4337,448,0 chrXIII 364636 . G T 4266.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=21.22;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4266,421,0 chrXIII 364639 . G A 4186.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=19.75;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4186,424,0 chrXIII 365275 . C T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.8821;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.90;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3323,334,0 chrXIII 365286 . T G 2963 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.2559;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=17.96;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2996,324,0 chrXIII 365359 . C T 4565.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=3.2257;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=20.66;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4565,463,0 chrXIII 365365 . T A 4536.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=20.62;SB=-3.044e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4536,463,0 chrXIII 365505 . G C 5048.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.3441;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=24.50;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5048,523,0 chrXIII 365551 . C T 6384.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=25.13;SB=-3.107e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6384,628,0 chrXIII 365580 . G A 6522.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=14.6374;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=24.16;SB=-3.087e+03 GT:AD:DP:GQ:PL 1/1:0,268:270:99:6522,649,0 chrXIII 365788 . T A 4883.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.50;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:4883,505,0 chrXIII 365953 . T C 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.829;DP=149;Dels=0.00;FS=24.453;HaplotypeScore=26.9128;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.431;QD=16.93;ReadPosRankSum=2.153;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:9,139:149:99:2556,249,0 chrXIII 366043 . T C 4224.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.3438;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.47;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4224,430,0 chrXIII 366401 . G T 5471.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=21.9048;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5471,556,0 chrXIII 366559 . T C 6146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.291;DP=260;Dels=0.00;FS=12.845;HaplotypeScore=21.6717;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.099;QD=23.64;ReadPosRankSum=3.400;SB=-3.268e+03 GT:AD:DP:GQ:PL 1/1:4,252:260:99:6146,637,0 chrXIII 366629 . C G 5993.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=12.5275;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,243:247:99:5993,601,0 chrXIII 366707 . A G 4179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=18.6699;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.045;QD=21.88;ReadPosRankSum=2.333;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4179,430,0 chrXIII 366806 . T C 4346.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.1998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4346,439,0 chrXIII 366938 . T C 4906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=191;Dels=0.00;FS=2.607;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.292;QD=25.69;ReadPosRankSum=2.372;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4906,505,0 chrXIII 367636 . T C 8004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=331;Dels=0.00;FS=3.768;HaplotypeScore=21.6693;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.094;QD=24.18;ReadPosRankSum=1.669;SB=-3.776e+03 GT:AD:DP:GQ:PL 1/1:1,330:331:99:8004,808,0 chrXIII 367845 . C A 4750.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.68;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4750,466,0 chrXIII 367942 . A T 3123 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.5808;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.02;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3156,313,0 chrXIII 368619 . G A 5323.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.48;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:5323,526,0 chrXIII 369062 . A C 4567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=209;Dels=0.00;FS=3.028;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.466;QD=21.85;ReadPosRankSum=2.426;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:2,206:209:99:4567,481,0 chrXIII 369419 . T C 3050 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.9941;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.94;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3083,327,0 chrXIII 369465 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2980,295,0 chrXIII 369610 . A G 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=130;Dels=0.00;FS=6.072;HaplotypeScore=12.8260;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.228;QD=22.29;ReadPosRankSum=2.945;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:3,125:130:99:2931,300,0 chrXIII 371117 . A G 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.269;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.816;QD=24.10;ReadPosRankSum=1.703;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2949,303,0 chrXIII 371525 . G A 3388.01 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=22.44;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3388,340,0 chrXIII 371527 . A G 3182 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=2.844;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.320;QD=21.21;ReadPosRankSum=2.417;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3215,333,0 chrXIII 371533 . G A 3227.04 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=21.66;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3260,331,0 chrXIII 371651 . A G 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;MQRankSum=0.315;QD=21.72;ReadPosRankSum=1.669;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2466,252,0 chrXIII 371667 . C A 2161 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=22.51;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2194,216,0 chrXIII 371689 . C T 2267 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;QD=20.61;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2300,243,0 chrXIII 371755 . A G 2545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.365;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;MQRankSum=-1.732;QD=24.71;ReadPosRankSum=1.698;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2578,261,0 chrXIII 371760 . A T 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=3.721;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=0;MQRankSum=-1.569;QD=24.79;ReadPosRankSum=1.667;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2661,262,0 chrXIII 371821 . A G 2256 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=22.79;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2289,237,0 chrXIII 371851 . A T 2053 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;QD=22.56;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2086,210,0 chrXIII 371856 . A C 1843 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=20.94;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1876,201,0 chrXIII 371874 . A T 1682 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.76;MQ0=0;QD=20.27;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1715,174,0 chrXIII 371909 . C G 731 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=14.62;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:81:764,81,0 chrXIII 371910 . T C 744 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=14.88;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:81:777,81,0 chrXIII 371920 . A G 803 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=0;QD=13.61;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:87:836,87,0 chrXIII 371940 . C T 691 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=13.29;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:81:724,81,0 chrXIII 371941 . T A 713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=7.700;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;MQRankSum=0.294;QD=13.45;ReadPosRankSum=1.667;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:81:746,81,0 chrXIII 371956 . G A 1052 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=16.70;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1085,108,0 chrXIII 371963 . G T 983 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=16.66;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1016,102,0 chrXIII 371979 . T C 989 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;QD=16.76;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1022,108,0 chrXIII 371989 . C G 994 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;QD=15.53;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1027,108,0 chrXIII 371993 . C T 1041 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.59;MQ0=0;QD=15.09;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1074,114,0 chrXIII 371997 . A G 1199 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.07;MQ0=0;QD=17.13;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1232,129,0 chrXIII 372077 . T C 730 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=16.98;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,42:43:84:763,84,0 chrXIII 372089 . C T 407 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.55;MQ0=0;QD=16.28;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,23:25:51:440,51,0 chrXIII 372090 . T G 395 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.76;MQ0=0;QD=17.17;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:51:428,51,0 chrXIII 372103 . G A 493 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;QD=15.41;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:60:526,60,0 chrXIII 372201 . G A 2662 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=26.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2695,262,0 chrXIII 372225 . T G 1842 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.74;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1875,192,0 chrXIII 372297 . A G 2099 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.85;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2132,219,0 chrXIII 372301 . C T 2158 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=24.52;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2191,216,0 chrXIII 372322 . C T 2375 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=22.84;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2408,237,0 chrXIII 372428 . C A 3849.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.9321;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=24.21;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3849,373,0 chrXIII 372531 . A G 1596 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5216;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=21.86;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1629,168,0 chrXIII 378680 . T A 735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;MQRankSum=-0.630;QD=16.70;ReadPosRankSum=1.654;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:75:768,75,0 chrXIII 378772 . C G 1543 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=26.60;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1576,162,0 chrXIII 378811 . A G 1724 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=24.28;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1757,180,0 chrXIII 378833 . C G 2101 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=23.87;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2134,225,0 chrXIII 378917 . A G 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=6.410;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.707;QD=25.57;ReadPosRankSum=1.683;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3605,376,0 chrXIII 378957 . C G 3809.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.64;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3809,388,0 chrXIII 379425 . A C 3738.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=21.61;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3738,385,0 chrXIII 379439 . A G 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=189;Dels=0.00;FS=3.032;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=0.007;QD=21.11;ReadPosRankSum=2.371;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:3990,412,0 chrXIII 379450 . C G 3838.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.31;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3838,408,0 chrXIII 379507 . T A 3958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2086;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-0.100;QD=20.61;ReadPosRankSum=1.660;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:3958,412,0 chrXIII 379602 . G C 3784.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=23.50;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3784,394,0 chrXIII 379628 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=3.257;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-1.180;QD=23.10;ReadPosRankSum=1.668;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3789,391,0 chrXIII 379777 . A G 3871.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=24.19;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3871,406,0 chrXIII 379795 . C T 3762.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=23.22;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3762,376,0 chrXIII 379813 . G A 3640.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=23.18;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3640,358,0 chrXIII 379973 . T C 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=140;Dels=0.00;FS=7.339;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-0.221;QD=21.72;ReadPosRankSum=2.414;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3074,313,0 chrXIII 379976 . T A 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=3.492;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;MQRankSum=-1.078;QD=21.33;ReadPosRankSum=1.708;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3083,315,0 chrXIII 379984 . G A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=22.38;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3401,334,0 chrXIII 380241 . A C 1447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=-1.260;QD=21.60;ReadPosRankSum=1.680;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1480,159,0 chrXIII 380333 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.14;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1428,153,0 chrXIII 380640 . A G 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.8653;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.910;QD=23.22;ReadPosRankSum=1.665;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3645,381,0 chrXIII 381204 . T C 4769.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4769,499,0 chrXIII 381248 . T C 4741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=199;Dels=0.00;FS=8.869;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.919;QD=23.82;ReadPosRankSum=2.376;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4741,493,0 chrXIII 381609 . A G 3429.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.7628;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.65;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3429,352,0 chrXIII 381711 . A G 4738.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4738,490,0 chrXIII 381948 . C T 4404.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.30;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4404,436,0 chrXIII 382194 . C T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.46;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3810,379,0 chrXIII 382384 . A T 3385.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.2879;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.45;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3385,334,0 chrXIII 384682 . C G 5904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=249;Dels=0.00;FS=3.265;HaplotypeScore=17.5683;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.718;QD=23.71;ReadPosRankSum=1.042;SB=-2.978e+03 GT:AD:DP:GQ:PL 1/1:1,245:249:99:5904,619,0 chrXIII 385613 . G C 3923.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.8641;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.16;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:3923,411,0 chrXIII 385805 . T A 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;DP=146;Dels=0.00;FS=2.903;HaplotypeScore=15.0031;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.850;QD=22.68;ReadPosRankSum=2.382;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3312,348,0 chrXIII 387028 . G A 2415 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.8839;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.78;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2448,240,0 chrXIII 387084 . C G 503 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=14.37;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:57:536,57,0 chrXIII 387174 . A G 1381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=7.634;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.73;MQ0=0;MQRankSum=-1.673;QD=23.41;ReadPosRankSum=1.673;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1414,150,0 chrXIII 387573 . T C 6722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=284;Dels=0.00;FS=3.747;HaplotypeScore=18.8077;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.209;QD=23.67;ReadPosRankSum=1.720;SB=-3.359e+03 GT:AD:DP:GQ:PL 1/1:1,281:284:99:6722,694,0 chrXIII 387621 . C T 4905.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=19.7811;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.33;SB=-2.992e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:4905,511,0 chrXIII 387876 . G A 2620 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.01;FS=0.000;HaplotypeScore=3.6376;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=12.24;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:2653,270,0 chrXIII 387879 . A C 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.6864;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=0.699;QD=12.19;ReadPosRankSum=1.699;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:1,207:210:99:2593,273,0 chrXIII 388202 . C T 5828.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.08;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5828,601,0 chrXIII 388416 . T C 5893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=15.8192;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.546;QD=24.45;ReadPosRankSum=2.388;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:2,238:241:99:5893,595,0 chrXIII 388450 . A G 4999.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=25.00;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4999,508,0 chrXIII 388831 . G A 3680.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=26.10;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3680,373,0 chrXIII 389020 . A G 9346.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=384;Dels=0.00;FS=16.237;HaplotypeScore=15.4600;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-0.591;QD=24.34;ReadPosRankSum=2.939;SB=-3.020e+03 GT:AD:DP:GQ:PL 1/1:3,377:384:99:9346,941,0 chrXIII 389031 . C T 8868.01 filter AC=2;AF=1.00;AN=2;DP=386;Dels=0.00;FS=0.000;HaplotypeScore=9.6521;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.97;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:0,385:386:99:8868,884,0 chrXIII 389517 . C T 7800.01 PASS AC=2;AF=1.00;AN=2;DP=351;Dels=0.00;FS=0.000;HaplotypeScore=19.5499;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.22;SB=-3.172e+03 GT:AD:DP:GQ:PL 1/1:0,349:351:99:7800,772,0 chrXIII 390009 . G A 8005.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=15.9622;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.02;SB=-4.192e+03 GT:AD:DP:GQ:PL 1/1:0,319:320:99:8005,782,0 chrXIII 390237 . T C 5660.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.20;SB=-3.188e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5660,586,0 chrXIII 390351 . T C 6308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.395;DP=265;Dels=0.00;FS=9.076;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=-2.042;QD=23.80;ReadPosRankSum=3.408;SB=-3.645e+03 GT:AD:DP:GQ:PL 1/1:4,260:265:99:6308,625,0 chrXIII 390358 . C A 6518.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=9.1013;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.96;SB=-3.623e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:6518,640,0 chrXIII 390486 . T G 6199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=261;Dels=0.00;FS=9.442;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-2.647;QD=23.75;ReadPosRankSum=2.950;SB=-3.521e+03 GT:AD:DP:GQ:PL 1/1:3,257:261:99:6199,625,0 chrXIII 390664 . C G 4545.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.8260;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.67;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4545,475,0 chrXIII 391021 . A T 2912 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.2824;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.27;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2945,303,0 chrXIII 391381 . T C 2904 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=22.51;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2937,303,0 chrXIII 391443 . T C 3615.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3615,370,0 chrXIII 391504 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.20;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:2017,198,0 chrXIII 391574 . G A 2825 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.65;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2858,289,0 chrXIII 391763 . G A 4409.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.19;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4409,442,0 chrXIII 391847 . A G 4244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=178;Dels=0.00;FS=9.254;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.362;QD=23.84;ReadPosRankSum=2.893;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:4244,433,0 chrXIII 392147 . G A 3369.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.41;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3369,340,0 chrXIII 392206 . T C 3304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=3.342;HaplotypeScore=5.0613;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.630;QD=24.29;ReadPosRankSum=1.707;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3304,337,0 chrXIII 392476 . T C 4952.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.1046;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.61;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4952,523,0 chrXIII 393315 . A G 4702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.7528;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=-0.081;QD=24.36;ReadPosRankSum=1.678;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4702,475,0 chrXIII 393588 . G A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3683,364,0 chrXIII 394309 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.87;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1343,132,0 chrXIII 394731 . G C 2837 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.16;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2870,300,0 chrXIII 394755 . G A 3036 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.83;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3069,307,0 chrXIII 394852 . C T 2059 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.13;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2092,207,0 chrXIII 394901 . G C 2188 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.66;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2221,237,0 chrXIII 395396 . T C 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=203;Dels=0.00;FS=3.587;HaplotypeScore=12.5733;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.250;QD=20.93;ReadPosRankSum=1.715;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4248,445,0 chrXIII 395990 . A G 2878 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8273;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.59;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2911,309,0 chrXIII 396068 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.408;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.6074;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.012;QD=25.11;ReadPosRankSum=1.184;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3516,324,0 chrXIII 396104 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=22.18;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3049,315,0 chrXIII 396107 . G A 2974 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=22.19;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3007,306,0 chrXIII 396173 . G A 2805 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=21.58;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2838,283,0 chrXIII 396176 . C T 2818 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=21.51;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2851,288,0 chrXIII 396424 . A G 4967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=4.427;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-1.286;QD=25.34;ReadPosRankSum=1.714;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4967,534,0 chrXIII 396464 . G A 4991.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=24.96;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4991,499,0 chrXIII 396483 . T C 4800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.205;DP=213;Dels=0.00;FS=5.243;HaplotypeScore=11.7524;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.391;QD=22.54;ReadPosRankSum=3.032;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:4,208:213:99:4800,507,0 chrXIII 396594 . C A 4727.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.01;FS=0.000;HaplotypeScore=36.7108;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=23.87;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4727,463,0 chrXIII 396680 . C G 4581.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.0446;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.46;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4581,469,0 chrXIII 396704 . C T 4719.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.6113;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.48;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4719,463,0 chrXIII 396921 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.2974;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=1.258;QD=26.21;ReadPosRankSum=0.475;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3826,371,0 chrXIII 396950 . G A 4493.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.7635;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.97;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4493,442,0 chrXIII 397127 . G C 6862.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=26.6170;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.95;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,271:275:99:6862,706,0 chrXIII 397176 . T C 7255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=296;Dels=0.00;FS=2.910;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.238;QD=24.51;ReadPosRankSum=2.366;SB=-3.560e+03 GT:AD:DP:GQ:PL 1/1:2,292:296:99:7255,733,0 chrXIII 397824 . A G 4256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=176;Dels=0.00;FS=5.646;HaplotypeScore=14.4236;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.569;QD=24.18;ReadPosRankSum=2.960;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:3,172:176:99:4256,439,0 chrXIII 398046 . T C 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.507;QD=22.42;ReadPosRankSum=1.711;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3700,370,0 chrXIII 398054 . A G 3771.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.1340;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=22.05;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3771,382,0 chrXIII 398240 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=166;Dels=0.00;FS=2.996;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-0.792;QD=24.42;ReadPosRankSum=2.420;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:4054,412,0 chrXIII 398256 . C T 4020.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=24.22;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4020,403,0 chrXIII 398295 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=166;Dels=0.00;FS=2.856;HaplotypeScore=12.6640;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=1.828;QD=21.06;ReadPosRankSum=2.376;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3496,363,0 chrXIII 398377 . A G 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=153;Dels=0.00;FS=3.032;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.188;QD=24.07;ReadPosRankSum=2.369;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3682,382,0 chrXIII 398430 . A G 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.058;DP=133;Dels=0.00;FS=3.034;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.555;QD=22.68;ReadPosRankSum=2.133;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:3050,321,0 chrXIII 398491 . A G 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=0.352;QD=24.54;ReadPosRankSum=1.678;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:2,127:131:99:3248,333,0 chrXIII 398538 . A C 3448.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.63;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3448,352,0 chrXIII 398576 . A T 3471.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=26.50;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3471,346,0 chrXIII 398620 . A C 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=125;Dels=0.00;FS=2.965;HaplotypeScore=9.3913;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-1.013;QD=25.38;ReadPosRankSum=2.410;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:3205,333,0 chrXIII 398658 . G A 2790 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.0101;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=27.09;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2823,280,0 chrXIII 398786 . A T 2196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.695;DP=96;Dels=0.00;FS=2.608;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.442;QD=22.87;ReadPosRankSum=2.885;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:2229,231,0 chrXIII 398818 . T C 1870 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=21.25;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1903,195,0 chrXIII 398820 . G A 1931 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=20.99;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1964,198,0 chrXIII 398916 . T C 1960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.922;QD=25.45;ReadPosRankSum=1.687;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1993,210,0 chrXIII 398994 . C T 2173 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=26.18;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2206,225,0 chrXIII 399077 . G A 2645 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=25.19;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2678,268,0 chrXIII 400173 . C T 4083.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.1085;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.30;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4083,409,0 chrXIII 400769 . G A 4550.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.3535;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.46;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4550,457,0 chrXIII 400907 . A G 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=3.010;HaplotypeScore=15.8742;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.157;QD=23.58;ReadPosRankSum=1.687;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3655,379,0 chrXIII 401274 . G A 3161 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.59;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3194,316,0 chrXIII 401296 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=156;Dels=0.00;FS=11.646;HaplotypeScore=9.0781;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=1.292;QD=22.59;ReadPosRankSum=2.916;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:3,152:156:99:3524,361,0 chrXIII 401410 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.0074;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.35;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2974,300,0 chrXIII 401494 . T G 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=138;Dels=0.00;FS=3.808;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.544;QD=25.30;ReadPosRankSum=1.682;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3491,361,0 chrXIII 401933 . C G 2995 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=25.38;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:3028,307,0 chrXIII 402251 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=23.71;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3509,343,0 chrXIII 402254 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=23.87;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3414,334,0 chrXIII 402422 . T C 4037.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.91;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4037,421,0 chrXIII 402534 . G A 2932 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=22.73;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2965,289,0 chrXIII 402537 . A G 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=-0.378;QD=21.41;ReadPosRankSum=1.706;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2880,297,0 chrXIII 402574 . A T 3161 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.6685;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=20.93;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3194,313,0 chrXIII 403091 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.83;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2963,303,0 chrXIII 403250 . A G 2330 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=0.656;QD=22.62;ReadPosRankSum=1.698;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2363,243,0 chrXIII 403256 . A G 2057 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=0.177;QD=20.99;ReadPosRankSum=1.697;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2090,213,0 chrXIII 403258 . A G 2058 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=97;Dels=0.00;FS=3.054;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-0.013;QD=21.22;ReadPosRankSum=2.398;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:2,94:97:99:2091,207,0 chrXIII 403773 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2778,274,0 chrXIII 403865 . C T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=26.15;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3478,349,0 chrXIII 403883 . G A 3387.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=24.54;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3387,337,0 chrXIII 406240 . C T 3030 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=25.90;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:3063,312,0 chrXIII 406355 . T C 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.607;DP=146;Dels=0.00;FS=2.539;HaplotypeScore=9.6923;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.007;QD=25.47;ReadPosRankSum=2.952;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3719,388,0 chrXIII 408165 . G T 7250.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=28.4713;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.49;SB=-3.733e+03 GT:AD:DP:GQ:PL 1/1:0,295:296:99:7250,718,0 chrXIII 409453 . T C 4433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=194;Dels=0.00;FS=4.957;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=-0.825;QD=22.85;ReadPosRankSum=1.660;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,190:194:99:4433,463,0 chrXIII 409603 . T C 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=145;Dels=0.00;FS=9.239;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.584;QD=21.90;ReadPosRankSum=2.415;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:2,139:145:99:3208,331,0 chrXIII 409642 . T A 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=0.557;QD=16.51;ReadPosRankSum=1.702;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1932,219,0 chrXIII 409643 . A G 1914 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=16.94;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1947,219,0 chrXIII 410283 . C A 5331.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.80;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5331,532,0 chrXIII 410320 . T C 4491.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4491,460,0 chrXIII 411113 . C T 4964.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.3151;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=26.69;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4964,487,0 chrXIII 411278 . G C 3908.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=21.96;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3908,397,0 chrXIII 413652 . A G 3379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=3.586;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.822;QD=24.49;ReadPosRankSum=1.682;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3379,346,0 chrXIII 415535 . G A 2955 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2988,297,0 chrXIII 415772 . T G 2521 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.46;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2554,264,0 chrXIII 416114 . T C 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=17.3904;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.811;QD=23.99;ReadPosRankSum=1.712;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4150,433,0 chrXIII 416929 . C T 4470.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4470,445,0 chrXIII 417524 . C T 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.633;QD=24.29;ReadPosRankSum=-0.907;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2583,255,0 chrXIII 417990 . G C 2809 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2842,303,0 chrXIII 420098 . A T 4128.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.96;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4128,403,0 chrXIII 420689 . C T 2214 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.5621;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.09;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2247,222,0 chrXIII 425898 . T C 2940 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.10;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2973,304,0 chrXIII 426219 . T A 917 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=8.4392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.67;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:950,99,0 chrXIII 426255 . A C 899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=52;Dels=0.00;FS=3.181;HaplotypeScore=7.2771;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.399;QD=17.29;ReadPosRankSum=1.666;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:96:932,96,0 chrXIII 429941 . A T 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=143;Dels=0.00;FS=3.167;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.560;QD=26.08;ReadPosRankSum=1.708;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3729,373,0 chrXIII 431689 . C T 4263.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4263,433,0 chrXIII 432625 . C T 4123.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.7346;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.14;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4123,403,0 chrXIII 433082 . G A 2789 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.31;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2822,277,0 chrXIII 436342 . A G 1701 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=17.72;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1734,198,0 chrXIII 436343 . G A 1686 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=17.75;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1719,195,0 chrXIII 436396 . G A 1476 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=18.68;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1509,150,0 chrXIII 436456 . G C 1791 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.96;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1824,189,0 chrXIII 436595 . A C 2009 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=26.09;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:2042,210,0 chrXIII 436769 . G A 3550.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.10;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3550,349,0 chrXIII 437012 . A G 5769.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.44;SB=-3.287e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5769,592,0 chrXIII 437167 . T C 4635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.5538;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.674;QD=25.89;ReadPosRankSum=1.713;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4635,472,0 chrXIII 437323 . T C 5018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=195;Dels=0.00;FS=2.986;HaplotypeScore=20.9268;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.525;QD=25.73;ReadPosRankSum=2.412;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:5018,505,0 chrXIII 437477 . G A 3720.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;QD=22.41;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3720,376,0 chrXIII 437586 . T C 3872.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.25;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,169:174:99:3872,400,0 chrXIII 437607 . T C 4048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=4.472;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=1.134;QD=23.95;ReadPosRankSum=1.711;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:4048,412,0 chrXIII 437854 . G T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=14.3008;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=25.23;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3330,331,0 chrXIII 437922 . T C 4667.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.5859;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.45;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4667,498,0 chrXIII 438030 . C T 4753.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=25.83;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4753,469,0 chrXIII 438051 . A T 4266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=3.465;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.436;QD=24.95;ReadPosRankSum=1.570;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4266,424,0 chrXIII 438448 . A G 4811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=205;Dels=0.00;FS=5.035;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.308;QD=23.47;ReadPosRankSum=1.647;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4811,513,0 chrXIII 438469 . C T 4594.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.1792;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.86;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4594,460,0 chrXIII 438537 . C T 5769.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.53;SB=-2.993e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5769,577,0 chrXIII 438648 . C T 5090.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=24.83;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5090,511,0 chrXIII 438807 . C T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.53;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3703,367,0 chrXIII 438816 . T C 3944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.471;QD=21.43;ReadPosRankSum=1.657;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3944,414,0 chrXIII 438843 . G A 4528.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=23.10;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4528,445,0 chrXIII 438893 . T A 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=18.1696;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-1.077;QD=23.49;ReadPosRankSum=2.399;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4580,454,0 chrXIII 439132 . A G 5487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.049;DP=236;Dels=0.00;FS=2.979;HaplotypeScore=11.3342;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-2.302;QD=23.25;ReadPosRankSum=2.428;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:2,231:236:99:5487,541,0 chrXIII 439294 . A T 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-1.207;QD=23.40;ReadPosRankSum=1.648;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3861,394,0 chrXIII 439396 . T C 4672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=192;Dels=0.00;FS=2.965;HaplotypeScore=12.7779;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.979;QD=24.33;ReadPosRankSum=2.373;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4672,478,0 chrXIII 439535 . A G 4160.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.5719;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.61;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4160,427,0 chrXIII 439546 . C T 4004.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.2571;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.00;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4004,403,0 chrXIII 439726 . T C 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=170;Dels=0.00;FS=3.750;HaplotypeScore=15.0547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-1.169;QD=22.85;ReadPosRankSum=1.586;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,165:170:99:3884,394,0 chrXIII 439839 . T C 4380.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.1960;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.01;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4380,463,0 chrXIII 439886 . G A 4633.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=17.1179;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.52;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4633,469,0 chrXIII 439978 . A T 4085.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.4954;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.181;QD=23.21;ReadPosRankSum=0.768;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4085,415,0 chrXIII 439990 . A G 4108.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.8928;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=24.45;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4108,421,0 chrXIII 440197 . A G 5361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.2647;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.389;QD=26.15;ReadPosRankSum=1.698;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:5361,553,0 chrXIII 440668 . T C 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=159;Dels=0.00;FS=3.029;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-1.646;QD=24.18;ReadPosRankSum=2.403;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3844,397,0 chrXIII 440791 . T C 3004 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=18.89;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3037,307,0 chrXIII 440792 . T C 3042 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=19.13;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3075,310,0 chrXIII 440977 . G A 4235.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.5264;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.66;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4235,424,0 chrXIII 441031 . C T 3404.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.9302;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=18.01;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3404,331,0 chrXIII 441110 . T G 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=159;Dels=0.00;FS=4.555;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.474;QD=23.15;ReadPosRankSum=1.644;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3681,387,0 chrXIII 441184 . C T 4272.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.43;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4272,421,0 chrXIII 441799 . G A 3939.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.93;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3939,394,0 chrXIII 442194 . A G 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.8515;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.266;QD=21.38;ReadPosRankSum=1.133;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2257,231,0 chrXIII 442338 . C T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.70;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3655,373,0 chrXIII 442504 . G A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.3501;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.33;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3283,325,0 chrXIII 442817 . C T 4053.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=4.2752;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=24.27;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4053,409,0 chrXIII 442835 . A G 4870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=203;Dels=0.00;FS=3.490;HaplotypeScore=12.4520;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-0.336;QD=23.99;ReadPosRankSum=1.715;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4870,511,0 chrXIII 442877 . C T 5111.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.66;SB=-2.804e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5111,520,0 chrXIII 442886 . T A 5404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=249;Dels=0.00;FS=3.668;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-1.120;QD=21.70;ReadPosRankSum=1.718;SB=-3.007e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:5404,547,0 chrXIII 442916 . A G 5725.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=15.4586;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.89;SB=-3.229e+03 GT:AD:DP:GQ:PL 1/1:0,273:274:99:5725,589,0 chrXIII 442976 . A C 5914.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=20.9788;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.24;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5914,625,0 chrXIII 443054 . T C 4466.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=20.87;SB=-2.934e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4466,466,0 chrXIII 443057 . C T 4732.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.32;SB=-3.166e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4732,463,0 chrXIII 443272 . T C 3324.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.41;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3324,345,0 chrXIII 443373 . G A 2245 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.1143;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.23;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2278,225,0 chrXIII 443864 . T A 6996.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=23.7980;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.38;SB=-3.400e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:6996,694,0 chrXIII 443942 . G A 6569.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=5.8622;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=25.76;SB=-2.991e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:6569,649,0 chrXIII 443954 . G C 5596.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=24.12;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5596,586,0 chrXIII 443966 . T C 5397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=220;Dels=0.00;FS=7.600;HaplotypeScore=8.2663;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.463;QD=24.53;ReadPosRankSum=2.394;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:5397,550,0 chrXIII 444110 . G A 4852.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.81;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4852,478,0 chrXIII 444158 . T C 4073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=160;Dels=0.00;FS=7.161;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.688;QD=25.46;ReadPosRankSum=2.388;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:4073,430,0 chrXIII 444227 . G A 3413.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.45;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3413,334,0 chrXIII 444299 . G A 3129 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.18;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3162,313,0 chrXIII 444383 . G A 3667.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3667,361,0 chrXIII 444677 . A G 4842.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.4599;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.97;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4842,508,0 chrXIII 445007 . G A 2159 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.76;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2192,216,0 chrXIII 445016 . A G 2039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=105;Dels=0.00;FS=3.053;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.723;QD=19.42;ReadPosRankSum=1.698;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2072,213,0 chrXIII 445293 . C T 3220.05 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.39;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3253,333,0 chrXIII 446062 . T C 6992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=291;Dels=0.00;FS=2.913;HaplotypeScore=21.2236;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-1.724;QD=24.03;ReadPosRankSum=2.424;SB=-3.351e+03 GT:AD:DP:GQ:PL 1/1:2,289:291:99:6992,712,0 chrXIII 446215 . T C 5881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=275;Dels=0.00;FS=3.000;HaplotypeScore=13.1704;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.292;QD=21.39;ReadPosRankSum=2.396;SB=-3.357e+03 GT:AD:DP:GQ:PL 1/1:2,271:275:99:5881,619,0 chrXIII 446239 . A T 5030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=248;Dels=0.00;FS=2.983;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-0.343;QD=20.28;ReadPosRankSum=2.420;SB=-3.299e+03 GT:AD:DP:GQ:PL 1/1:2,246:248:99:5030,505,0 chrXIII 446260 . T C 4284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=252;Dels=0.00;FS=4.433;HaplotypeScore=3.6615;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=0.077;QD=17.00;ReadPosRankSum=1.718;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:1,246:252:99:4284,445,0 chrXIII 446284 . T C 4116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=250;Dels=0.00;FS=4.914;HaplotypeScore=5.0748;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-0.321;QD=16.46;ReadPosRankSum=1.704;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:1,247:250:99:4116,421,0 chrXIII 446311 . G T 4619.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=14.7910;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=17.11;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,268:270:99:4619,472,0 chrXIII 446362 . A G 5446.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.25;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:5446,559,0 chrXIII 446404 . G C 5430.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=12.3181;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.81;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5430,580,0 chrXIII 446761 . T C 4330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.904;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=17.6069;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-0.056;QD=21.54;ReadPosRankSum=1.502;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:2,196:201:99:4330,456,0 chrXIII 446931 . G A 3718.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=24.30;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3718,367,0 chrXIII 446935 . C T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=23.31;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3567,358,0 chrXIII 446980 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=182;Dels=0.00;FS=6.599;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.240;QD=20.82;ReadPosRankSum=2.381;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:3789,391,0 chrXIII 446995 . A C 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-0.776;QD=19.89;ReadPosRankSum=1.712;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3461,360,0 chrXIII 447319 . A G 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=179;Dels=0.00;FS=6.144;HaplotypeScore=14.3942;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.139;QD=23.22;ReadPosRankSum=2.381;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:4157,436,0 chrXIII 447382 . C G 3885.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.85;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3885,400,0 chrXIII 447439 . C T 4379.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.3305;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.80;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4379,445,0 chrXIII 447488 . A G 4914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.715;QD=23.97;ReadPosRankSum=1.698;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4914,520,0 chrXIII 447556 . A G 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=-0.364;QD=21.85;ReadPosRankSum=1.711;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3539,367,0 chrXIII 447559 . T C 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=167;Dels=0.00;FS=3.037;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=-1.491;QD=20.90;ReadPosRankSum=2.420;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:2,162:167:99:3491,363,0 chrXIII 447610 . T A 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=3.499;HaplotypeScore=12.0373;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.995;QD=21.08;ReadPosRankSum=1.683;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3005,303,0 chrXIII 447865 . T C 4429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=15.6128;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.812;QD=22.95;ReadPosRankSum=2.398;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4429,460,0 chrXIII 448139 . A T 5132.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.9925;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.33;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5132,511,0 chrXIII 448323 . C A 3501.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=22.73;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3501,346,0 chrXIII 448333 . G A 2563 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=17.44;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2596,288,0 chrXIII 448334 . A G 2575 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=17.64;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2608,291,0 chrXIII 448374 . C T 2808 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.06;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2841,283,0 chrXIII 448512 . G A 4602.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.8677;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=26.15;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4602,451,0 chrXIII 448556 . G A 4319.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;QD=26.02;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4319,430,0 chrXIII 448688 . C G 4156.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3013;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=22.34;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4156,430,0 chrXIII 448690 . T C 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=3.664;HaplotypeScore=4.8333;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;MQRankSum=1.713;QD=22.39;ReadPosRankSum=1.713;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:4053,427,0 chrXIII 448702 . T C 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=3.624;HaplotypeScore=6.6128;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;MQRankSum=-1.123;QD=21.25;ReadPosRankSum=1.713;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3867,394,0 chrXIII 448755 . C T 2210 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=0;QD=15.90;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2243,222,0 chrXIII 448756 . G T 2166 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=0;QD=15.58;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2199,219,0 chrXIII 448761 . A C 1908 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=148;Dels=0.00;FS=5.455;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.94;MQ0=0;MQRankSum=-2.708;QD=12.89;ReadPosRankSum=2.953;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:1941,204,0 chrXIII 448778 . A G 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=153;Dels=0.00;FS=5.239;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=0;MQRankSum=1.283;QD=11.86;ReadPosRankSum=2.954;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:1847,195,0 chrXIII 448794 . G A 2021 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;QD=13.21;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2054,210,0 chrXIII 448808 . T C 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.325;DP=169;Dels=0.00;FS=16.580;HaplotypeScore=1.9913;MLEAC=2;MLEAF=1.00;MQ=37.28;MQ0=0;MQRankSum=-2.787;QD=11.86;ReadPosRankSum=3.408;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:4,165:169:99:2037,213,0 chrXIII 448829 . C T 2344 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.08;MQ0=0;QD=14.29;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2377,237,0 chrXIII 448852 . C T 2237 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=15.75;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2270,231,0 chrXIII 448855 . G C 2211 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;QD=14.84;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2244,234,0 chrXIII 448906 . G A 2579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.371;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;MQRankSum=-1.395;QD=17.91;ReadPosRankSum=1.636;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2612,279,0 chrXIII 448909 . C T 2885 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;QD=19.23;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2918,283,0 chrXIII 448943 . A T 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=162;Dels=0.00;FS=7.078;HaplotypeScore=9.3868;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;MQRankSum=-0.827;QD=21.87;ReadPosRankSum=2.419;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3543,358,0 chrXIII 449003 . C T 3160 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=22.41;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3193,324,0 chrXIII 449012 . C T 3401.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=23.14;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3401,334,0 chrXIII 449090 . C T 3837.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.4207;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=23.40;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3837,382,0 chrXIII 449107 . T C 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;MQRankSum=-0.202;QD=23.70;ReadPosRankSum=1.711;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3863,394,0 chrXIII 449173 . G A 2986 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;QD=20.31;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3019,298,0 chrXIII 449175 . T C 2827 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=19.50;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2860,303,0 chrXIII 449205 . G C 2561 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=16.74;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2594,270,0 chrXIII 449222 . C T 2392 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;QD=13.91;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2425,255,0 chrXIII 449228 . T C 2439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=176;Dels=0.00;FS=2.835;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;MQRankSum=-1.724;QD=13.86;ReadPosRankSum=2.422;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:2472,258,0 chrXIII 449237 . T A 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.638;DP=187;Dels=0.00;FS=5.569;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;MQRankSum=-2.097;QD=13.83;ReadPosRankSum=2.962;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:2620,270,0 chrXIII 449317 . G A 4849.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=16.1958;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=26.21;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,181:185:99:4849,475,0 chrXIII 449640 . T C 4735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=3.555;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.625;QD=23.91;ReadPosRankSum=1.714;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:1,194:198:99:4735,481,0 chrXIII 449694 . T C 4279.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.01;FS=0.000;HaplotypeScore=15.8420;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.45;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4279,433,0 chrXIII 449784 . G A 2916 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2949,286,0 chrXIII 449844 . G A 2681 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.1626;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.72;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2714,279,0 chrXIII 449969 . G A 2325 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8287;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2358,231,0 chrXIII 450012 . C T 2872 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.35;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2905,286,0 chrXIII 450562 . G A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.1147;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4242,418,0 chrXIII 450621 . A G 3203 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.5648;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.72;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3236,334,0 chrXIII 450856 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3511,346,0 chrXIII 451375 . A C 3630.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3630,370,0 chrXIII 451494 . T C 3053 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.96;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3086,315,0 chrXIII 451502 . T C 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=143;Dels=0.00;FS=4.119;HaplotypeScore=4.5447;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.439;QD=20.92;ReadPosRankSum=1.708;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3024,318,0 chrXIII 451590 . A G 2321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.414;DP=99;Dels=0.00;FS=3.100;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=23.44;ReadPosRankSum=1.697;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2354,243,0 chrXIII 451743 . C T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=24.53;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3606,361,0 chrXIII 452064 . G A 4159.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.50;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4159,430,0 chrXIII 452181 . C T 5261.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=23.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:5261,517,0 chrXIII 452594 . G C 6864.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=17.2422;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.42;SB=-3.775e+03 GT:AD:DP:GQ:PL 1/1:0,267:270:99:6864,709,0 chrXIII 452639 . C T 7186.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=13.0151;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.71;SB=-3.055e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:7186,715,0 chrXIII 453023 . A G 5903.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=13.1800;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-3.264e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5903,595,0 chrXIII 453366 . T G 5258.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=229;Dels=0.00;FS=7.779;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.303;QD=22.96;ReadPosRankSum=2.352;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:2,225:229:99:5258,544,0 chrXIII 453550 . C T 4815.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.02;FS=0.000;HaplotypeScore=37.4948;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;QD=25.61;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4815,487,0 chrXIII 453647 . G A 4732.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.1640;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.00;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4732,466,0 chrXIII 453738 . T G 3204.99 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.39;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3238,339,0 chrXIII 453792 . C G 3405.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.70;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3405,346,0 chrXIII 453833 . T C 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=6.700;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.374;QD=22.45;ReadPosRankSum=1.708;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3277,339,0 chrXIII 453976 . T C 3427.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.65;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3427,357,0 chrXIII 453998 . C A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=24.09;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3300,340,0 chrXIII 454515 . T C 4162.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=22.62;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4162,424,0 chrXIII 454584 . C T 4373.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.0934;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4373,433,0 chrXIII 455076 . T C 5747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=281;Dels=0.00;FS=5.582;HaplotypeScore=19.7536;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.982;QD=20.45;ReadPosRankSum=2.953;SB=-3.133e+03 GT:AD:DP:GQ:PL 1/1:3,276:281:99:5747,592,0 chrXIII 457013 . A G 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=121;Dels=0.00;FS=3.010;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.457;QD=23.70;ReadPosRankSum=2.408;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:2,117:121:99:2901,297,0 chrXIII 458354 . C T 5308.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.41;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5308,529,0 chrXIII 459331 . A G 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=172;Dels=0.00;FS=2.716;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.524;QD=21.77;ReadPosRankSum=2.421;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3744,396,0 chrXIII 459995 . A C 3760.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.1008;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.93;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3760,382,0 chrXIII 460192 . T C 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.447;QD=25.09;ReadPosRankSum=1.644;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3965,397,0 chrXIII 461207 . A T 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.2574;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.991;QD=23.56;ReadPosRankSum=1.087;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3440,334,0 chrXIII 462521 . T C 3820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.3442;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.254;QD=24.33;ReadPosRankSum=1.688;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3820,391,0 chrXIII 464615 . G A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.0533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,160:166:99:3972,417,0 chrXIII 465559 . T C 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=3.021;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.079;QD=24.41;ReadPosRankSum=2.314;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2694,268,0 chrXIII 465619 . G T 3118 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.75;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3151,319,0 chrXIII 466235 . T C 4864.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.02;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4864,499,0 chrXIII 466416 . C A 3974.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.8813;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.84;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,155:160:99:3974,397,0 chrXIII 467958 . T C 6245.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=13.3761;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.28;SB=-3.206e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:6245,643,0 chrXIII 468051 . C T 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.3503;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.362;QD=22.21;ReadPosRankSum=0.410;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:1,130:134:99:3009,304,0 chrXIII 468328 . G A 426 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.75;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:45:459,45,0 chrXIII 468499 . A T 1767 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.61;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1800,177,0 chrXIII 469183 . C T 3593.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=18.0797;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.78;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3593,352,0 chrXIII 469945 . T C 4668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.074;QD=26.37;ReadPosRankSum=2.926;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:3,173:177:99:4668,478,0 chrXIII 470079 . T G 4034.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4034,412,0 chrXIII 470271 . G A 5154.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.02;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,202:206:99:5154,526,0 chrXIII 470373 . G A 6534.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=12.6873;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.03;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:6534,655,0 chrXIII 470412 . T C 4596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.5558;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.074;QD=22.75;ReadPosRankSum=1.697;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4596,492,0 chrXIII 470444 . A G 4093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=6.583;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.207;QD=24.22;ReadPosRankSum=2.420;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:4093,415,0 chrXIII 470916 . T C 4178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.5829;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.881;QD=22.96;ReadPosRankSum=1.693;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:1,178:182:99:4178,436,0 chrXIII 472220 . C T 4086.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.71;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:4086,406,0 chrXIII 473006 . A G 1841 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.93;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1874,195,0 chrXIII 473172 . T C 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=4.202;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.300;QD=20.09;ReadPosRankSum=1.686;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3067,318,0 chrXIII 474399 . T C 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.732;QD=22.99;ReadPosRankSum=1.706;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3159,316,0 chrXIII 476482 . A G 4475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=186;Dels=0.00;FS=6.284;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.547;QD=24.06;ReadPosRankSum=2.396;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4475,460,0 chrXIII 477292 . G A 5728.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=27.02;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5728,565,0 chrXIII 477340 . G A 5057.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.3708;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.55;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:5057,508,0 chrXIII 477725 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.9742;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.570;QD=22.97;ReadPosRankSum=1.668;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3721,393,0 chrXIII 478816 . C T 4318.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.99;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4318,424,0 chrXIII 480711 . C A 797 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=26.57;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:81:830,81,0 chrXIII 480735 . G T 493 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=18.9128;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=22.41;SB=-6.545e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:54:526,54,0 chrXIII 480795 . C A 520 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=63.33;MQ0=0;QD=27.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:54:553,54,0 chrXIII 480858 . G A 156.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;QD=17.35;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:189,18,0 chrXIII 480880 . C G 142.13 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=10.93;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,10:13:18:175,18,0 chrXIII 481017 . G A 2777 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=26.96;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2810,282,0 chrXIII 481051 . G C 53.97 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.96;MQ0=0;QD=0.64;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:84:9:86,9,0 chrXIII 481063 . A G 1550 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;QD=17.61;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1583,165,0 chrXIII 481095 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.02;MQ0=0;QD=16.40;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1722,168,0 chrXIII 481103 . G A 1930 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;QD=17.08;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1963,192,0 chrXIII 481193 . G A 2442 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=19.54;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2475,246,0 chrXIII 481198 . T C 2327 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=19.07;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2360,240,0 chrXIII 481254 . T A 1953 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=20.56;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1986,204,0 chrXIII 481282 . A T 1967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;MQRankSum=-0.737;QD=22.61;ReadPosRankSum=1.692;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2000,204,0 chrXIII 481286 . T A 1914 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=23.06;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1947,204,0 chrXIII 481297 . A G 1650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;MQRankSum=-0.855;QD=22.00;ReadPosRankSum=1.686;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1683,180,0 chrXIII 481413 . A T 2316 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=26.02;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2349,234,0 chrXIII 481481 . G T 2552 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=26.31;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2585,255,0 chrXIII 481531 . G T 1954 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=17.93;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1987,204,0 chrXIII 481534 . G A 1915 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=18.96;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1948,195,0 chrXIII 481553 . A G 1748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=6.474;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=-0.671;QD=15.75;ReadPosRankSum=1.670;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1781,189,0 chrXIII 481556 . G C 1733 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=15.90;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1766,183,0 chrXIII 481610 . C T 2318 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;QD=20.70;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2351,243,0 chrXIII 481632 . T A 2562 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=20.33;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2595,270,0 chrXIII 481645 . A T 2540 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=22.09;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2573,264,0 chrXIII 481647 . G T 2522 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=21.37;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2555,264,0 chrXIII 481735 . C T 3325.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.1382;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=24.45;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3325,342,0 chrXIII 481834 . G A 3208 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=26.73;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:3241,319,0 chrXIII 481860 . G C 2743 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=23.65;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,111:115:99:2776,294,0 chrXIII 481978 . G A 3466.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=25.87;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3466,343,0 chrXIII 482017 . A T 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=164;Dels=0.00;FS=13.241;HaplotypeScore=10.8406;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.344;QD=24.33;ReadPosRankSum=2.957;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3990,403,0 chrXIII 482184 . G A 3835.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7278;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.67;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3835,382,0 chrXIII 482208 . A G 3998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=2.835;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.050;QD=23.24;ReadPosRankSum=2.392;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3998,409,0 chrXIII 482260 . G C 3328.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.5226;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=23.11;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3328,348,0 chrXIII 482549 . C T 5215.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=16.6978;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.88;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5215,505,0 chrXIII 482798 . T A 4477.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.0890;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.69;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4477,445,0 chrXIII 483985 . C T 2573 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=26.26;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2606,264,0 chrXIII 484290 . C G 5070.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=19.9494;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.04;SB=-3.095e+03 GT:AD:DP:GQ:PL 1/1:0,226:230:99:5070,532,0 chrXIII 485130 . G A 5383.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.61;SB=-2.890e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5383,544,0 chrXIII 485474 . A C 3921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=150;Dels=0.00;FS=8.183;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-2.201;QD=26.14;ReadPosRankSum=2.416;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:2,146:150:99:3921,406,0 chrXIII 485712 . G A 6716.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=16.7848;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.33;SB=-3.720e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:6716,691,0 chrXIII 486339 . A G 1775 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.89;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1808,192,0 chrXIII 486464 . T C 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.693;QD=16.52;ReadPosRankSum=1.683;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1206,138,0 chrXIII 486465 . C T 1174 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=16.31;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1207,138,0 chrXIII 487177 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=2.972;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.434;QD=25.60;ReadPosRankSum=2.413;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3430,357,0 chrXIII 487393 . T C 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=153;Dels=0.00;FS=3.027;HaplotypeScore=13.5408;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.451;QD=24.95;ReadPosRankSum=2.417;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:2,148:153:99:3817,388,0 chrXIII 487468 . C T 4459.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.91;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4459,454,0 chrXIII 487539 . T C 3733.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.49;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3733,379,0 chrXIII 487573 . C T 4161.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.51;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4161,406,0 chrXIII 487606 . A G 4028.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.12;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4028,409,0 chrXIII 487633 . C T 4286.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=25.36;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4286,436,0 chrXIII 487714 . A G 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.695;DP=124;Dels=0.00;FS=2.525;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.223;QD=23.90;ReadPosRankSum=2.926;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:3,120:124:99:2997,312,0 chrXIII 487795 . A G 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=130;Dels=0.00;FS=5.946;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.367;QD=25.85;ReadPosRankSum=2.946;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:3,126:130:99:3361,340,0 chrXIII 487831 . T C 2760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=126;Dels=0.00;FS=3.893;HaplotypeScore=10.6113;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.319;QD=21.90;ReadPosRankSum=1.704;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2793,288,0 chrXIII 487951 . A C 4147.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.65;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4147,424,0 chrXIII 488017 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=118;Dels=0.00;FS=3.043;HaplotypeScore=8.7197;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=1.261;QD=24.08;ReadPosRankSum=2.387;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2875,294,0 chrXIII 489701 . C A 3349.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=17.26;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3349,337,0 chrXIII 489786 . G A 2069 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;QD=10.00;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:2102,207,0 chrXIII 489982 . T C 5915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=245;Dels=0.00;FS=5.782;HaplotypeScore=16.6854;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=0.799;QD=24.14;ReadPosRankSum=2.955;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:3,242:245:99:5915,598,0 chrXIII 490191 . G A 3922.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3922,388,0 chrXIII 490248 . C G 3024 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.24;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3057,313,0 chrXIII 490343 . A T 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=92;Dels=0.00;FS=3.617;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.226;QD=25.20;ReadPosRankSum=1.619;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2351,237,0 chrXIII 490598 . A G 5461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=214;Dels=0.00;FS=4.875;HaplotypeScore=10.2019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.572;QD=25.52;ReadPosRankSum=1.716;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:5461,571,0 chrXIII 490970 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4919;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3605,370,0 chrXIII 491108 . T C 2873 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=22.98;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2906,300,0 chrXIII 491117 . C T 2922 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=23.01;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2955,292,0 chrXIII 491129 . T C 2787 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.27;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2820,285,0 chrXIII 491237 . A G 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;DP=110;Dels=0.00;FS=11.287;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.299;QD=23.99;ReadPosRankSum=2.935;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:3,105:110:99:2672,276,0 chrXIII 491444 . G A 4195.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.22;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4195,415,0 chrXIII 491531 . A G 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=163;Dels=0.00;FS=2.971;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.479;QD=23.61;ReadPosRankSum=2.207;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3849,400,0 chrXIII 491569 . G A 4085.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.9437;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.17;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4085,403,0 chrXIII 491864 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=4.680;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.332;QD=23.26;ReadPosRankSum=1.708;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3280,339,0 chrXIII 492008 . C G 2410 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.52;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2443,249,0 chrXIII 492021 . T C 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=105;Dels=0.00;FS=7.732;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.527;QD=21.35;ReadPosRankSum=2.379;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:2,102:105:99:2275,237,0 chrXIII 492114 . C T 2906 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.25;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2939,295,0 chrXIII 492116 . T A 2862 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.27;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2895,291,0 chrXIII 492171 . A G 1976 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.20;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2009,207,0 chrXIII 492202 . G A 2230 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=25.93;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2263,222,0 chrXIII 492323 . T G 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=112;Dels=0.00;FS=3.693;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-1.386;QD=20.16;ReadPosRankSum=1.701;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2291,237,0 chrXIII 492373 . T A 2303 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=21.73;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2336,237,0 chrXIII 492378 . G C 2251 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=20.46;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2284,231,0 chrXIII 492388 . C T 2647 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=21.01;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2680,267,0 chrXIII 492459 . G A 2956 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=25.05;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2989,301,0 chrXIII 492749 . G T 3436.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3436,343,0 chrXIII 492833 . C T 4776.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.0737;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=27.93;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4776,472,0 chrXIII 493115 . G A 5091.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.9391;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.93;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5091,514,0 chrXIII 493130 . T C 4598.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.8839;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.90;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4598,484,0 chrXIII 493334 . C T 4209.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.6914;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.47;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4209,412,0 chrXIII 493442 . C T 4845.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.50;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4845,478,0 chrXIII 493797 . A G 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.9404;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.388;QD=15.32;ReadPosRankSum=1.711;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2561,267,0 chrXIII 493832 . G A 3202 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.39;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3235,336,0 chrXIII 494172 . G A 4915.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.7422;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.61;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4915,487,0 chrXIII 494247 . G A 4865.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.9581;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4865,499,0 chrXIII 494333 . T G 5044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=227;Dels=0.00;FS=9.684;HaplotypeScore=16.3689;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.240;QD=22.22;ReadPosRankSum=2.925;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:3,223:227:99:5044,526,0 chrXIII 494475 . C T 4126.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.0195;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.60;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4126,409,0 chrXIII 494582 . C T 2038 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.18;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2071,210,0 chrXIII 494673 . C T 1846 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=19.64;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1879,189,0 chrXIII 494734 . A G 565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.025;DP=36;Dels=0.00;FS=8.824;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.036;QD=15.69;ReadPosRankSum=1.883;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:2,33:36:72:598,72,0 chrXIII 494735 . G A 583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.358;DP=38;Dels=0.03;FS=4.543;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.515;QD=15.34;ReadPosRankSum=0.890;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:75:616,75,0 chrXIII 494827 . T A 1584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.997;QD=24.00;ReadPosRankSum=1.680;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1617,156,0 chrXIII 494850 . A C 1426 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.17;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,55:59:99:1459,150,0 chrXIII 494957 . T C 3299.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=26.18;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3299,345,0 chrXIII 495175 . A G 5724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=234;Dels=0.00;FS=9.373;HaplotypeScore=17.1211;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.280;QD=24.46;ReadPosRankSum=2.961;SB=-3.129e+03 GT:AD:DP:GQ:PL 1/1:3,230:234:99:5724,601,0 chrXIII 495304 . G A 5225.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=16.6130;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.08;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5225,514,0 chrXIII 495487 . A C 4731.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.8060;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.90;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,184:190:99:4731,490,0 chrXIII 495637 . A C 4856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=199;Dels=0.00;FS=3.189;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.592;QD=24.40;ReadPosRankSum=1.697;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4856,499,0 chrXIII 496111 . T C 4005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=160;Dels=0.00;FS=6.730;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.914;QD=25.03;ReadPosRankSum=2.388;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:4005,415,0 chrXIII 496303 . C T 2441 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=22.60;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2474,252,0 chrXIII 496310 . T G 2542 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=22.90;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2575,264,0 chrXIII 496501 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=23.16;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2117,216,0 chrXIII 496520 . T C 1853 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=19.71;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1886,201,0 chrXIII 496537 . A T 2008 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=19.69;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2041,213,0 chrXIII 496565 . A G 2831 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.94;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2864,306,0 chrXIII 496640 . T G 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.772;QD=21.36;ReadPosRankSum=1.669;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3545,375,0 chrXIII 496721 . G A 4424.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=25.28;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4424,445,0 chrXIII 496739 . C T 4300.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=23.89;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4300,430,0 chrXIII 496955 . A T 4324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=186;Dels=0.00;FS=5.875;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.519;QD=23.25;ReadPosRankSum=2.962;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:4324,427,0 chrXIII 497249 . A G 5098.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.4908;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.96;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5098,535,0 chrXIII 497270 . A G 4607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.7936;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.699;QD=21.83;ReadPosRankSum=1.803;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:2,207:211:99:4607,481,0 chrXIII 497366 . G C 4876.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4876,517,0 chrXIII 497568 . G T 4447.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.8442;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.01;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4447,445,0 chrXIII 497778 . G C 4053.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.2268;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.02;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4053,418,0 chrXIII 498101 . G A 3160 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.5686;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.69;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3193,322,0 chrXIII 498543 . G A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=26.33;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3396,337,0 chrXIII 498573 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.16;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3271,331,0 chrXIII 498616 . T A 2234 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.02;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2267,222,0 chrXIII 498745 . C T 4684.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.7232;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.17;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4684,463,0 chrXIII 499134 . A G 4173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=157;Dels=0.00;FS=2.586;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.045;QD=26.58;ReadPosRankSum=2.930;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:4173,424,0 chrXIII 499738 . A G 4687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.0373;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.602;QD=24.67;ReadPosRankSum=1.696;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4687,481,0 chrXIII 499915 . A T 3515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.325;DP=157;Dels=0.00;FS=8.249;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.719;QD=22.39;ReadPosRankSum=3.392;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:4,153:157:99:3515,346,0 chrXIII 499930 . A T 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=150;Dels=0.00;FS=3.039;HaplotypeScore=9.1510;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=1.204;QD=22.19;ReadPosRankSum=2.384;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3329,342,0 chrXIII 500119 . T G 5329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.8752;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.912;QD=25.87;ReadPosRankSum=2.402;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:5329,550,0 chrXIII 500738 . A G 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.965;QD=23.61;ReadPosRankSum=1.679;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3149,327,0 chrXIII 500788 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.31;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2950,289,0 chrXIII 500943 . T C 3987.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.2205;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=26.40;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3987,406,0 chrXIII 501060 . A G 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.402;QD=22.02;ReadPosRankSum=1.704;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2829,300,0 chrXIII 501084 . T C 2689 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=20.84;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2722,279,0 chrXIII 501090 . C T 2704 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.18;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2737,285,0 chrXIII 501121 . C T 3025 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.30;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3058,315,0 chrXIII 501143 . T G 3364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=5.079;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-0.979;QD=20.77;ReadPosRankSum=1.689;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3364,351,0 chrXIII 501678 . T G 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=168;Dels=0.00;FS=4.493;HaplotypeScore=12.6659;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.626;QD=20.83;ReadPosRankSum=1.711;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3500,364,0 chrXIII 501911 . T G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=154;Dels=0.00;FS=6.759;HaplotypeScore=5.8451;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.040;QD=20.96;ReadPosRankSum=2.418;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3261,336,0 chrXIII 502051 . C T 3483.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.63;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3483,346,0 chrXIII 502616 . T A 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=4.005;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.172;QD=23.41;ReadPosRankSum=1.590;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4003,394,0 chrXIII 502640 . T C 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=4.393;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.545;QD=23.33;ReadPosRankSum=1.708;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3359,340,0 chrXIII 502704 . C G 2753 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.15;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2786,285,0 chrXIII 502787 . G A 2834 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.62;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2867,286,0 chrXIII 502941 . A G 2527 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.56;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2560,264,0 chrXIII 502964 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.58;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2991,295,0 chrXIII 503047 . T A 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.139;DP=111;Dels=0.00;FS=6.300;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.075;QD=24.98;ReadPosRankSum=2.317;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2806,277,0 chrXIII 503125 . T C 3172 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=25.58;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3205,336,0 chrXIII 503212 . C T 3938.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=26.43;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3938,391,0 chrXIII 503284 . C T 2614 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.95;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2647,256,0 chrXIII 503379 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=24.48;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2946,303,0 chrXIII 503388 . C T 2785 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=23.60;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2818,294,0 chrXIII 503456 . G A 2345 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.6791;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=23.69;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2378,243,0 chrXIII 503612 . A T 1787 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;QD=25.17;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1820,189,0 chrXIII 503630 . C A 1588 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=35.6900;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=24.81;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1621,162,0 chrXIII 503664 . C A 1682 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;QD=25.48;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1715,174,0 chrXIII 503711 . G A 2273 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;QD=25.26;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2306,228,0 chrXIII 503721 . G T 2446 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=25.75;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2479,243,0 chrXIII 504174 . A T 816 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=18.55;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:84:849,84,0 chrXIII 504283 . G A 2153 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=25.63;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2186,222,0 chrXIII 504337 . G A 1821 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=26.39;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1854,186,0 chrXIII 504435 . A T 1786 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=24.81;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1819,180,0 chrXIII 504447 . C G 1744 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.25;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1777,183,0 chrXIII 504619 . T C 2011 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=23.94;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2044,213,0 chrXIII 504623 . A G 2011 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=24.23;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2044,213,0 chrXIII 504746 . A C 994 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=23.12;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1027,102,0 chrXIII 504775 . A T 933 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.28;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:966,93,0 chrXIII 504829 . G A 973 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=20.70;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1006,99,0 chrXIII 504848 . C G 969 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;QD=19.00;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1002,102,0 chrXIII 504878 . C T 897 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;QD=8.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:107:90:930,90,0 chrXIII 504891 . A G 164.06 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.43;MQ0=0;QD=2.28;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,72:72:21:197,21,0 chrXIII 505100 . C A 2158 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=23.71;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2191,216,0 chrXIII 505362 . G C 2707 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.1082;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.30;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2740,285,0 chrXIII 505690 . G A 3925.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.81;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3925,391,0 chrXIII 505942 . T C 1583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-1.064;QD=18.85;ReadPosRankSum=1.690;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1616,165,0 chrXIII 505945 . T C 1598 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.58;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1631,171,0 chrXIII 506148 . T C 2772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=125;Dels=0.00;FS=6.343;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.823;QD=22.18;ReadPosRankSum=2.192;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2805,285,0 chrXIII 506166 . G C 2771 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.2499;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.90;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2804,291,0 chrXIII 506403 . T C 2267 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.37;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2300,240,0 chrXIII 506583 . T C 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.635;QD=25.86;ReadPosRankSum=1.703;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3162,327,0 chrXIII 506788 . G A 4175.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.70;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4175,415,0 chrXIII 506838 . T C 3936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=3.489;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.052;QD=24.15;ReadPosRankSum=1.647;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3936,394,0 chrXIII 506964 . G A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.63;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3568,358,0 chrXIII 506980 . A G 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=7.972;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=1.096;QD=22.53;ReadPosRankSum=2.376;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:2,165:169:99:3808,394,0 chrXIII 507039 . G C 3498.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.46;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3498,364,0 chrXIII 507297 . C G 2715 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.62;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2748,282,0 chrXIII 507637 . A G 3916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.619;QD=23.17;ReadPosRankSum=1.650;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3916,403,0 chrXIII 507712 . T C 4600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.714;DP=204;Dels=0.00;FS=6.085;HaplotypeScore=18.1139;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.060;QD=22.55;ReadPosRankSum=2.915;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:3,197:204:99:4600,478,0 chrXIII 508047 . G T 833.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.984;DP=182;Dels=0.00;FS=346.434;HaplotypeScore=33.0474;MLEAC=1;MLEAF=0.500;MQ=58.72;MQ0=0;MQRankSum=1.828;QD=4.58;ReadPosRankSum=-7.947;SB=-4.348e-03 GT:AD:DP:GQ:PL 0/1:116,66:182:99:863,0,2111 chrXIII 508060 . T C 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=130;Dels=0.00;FS=21.872;HaplotypeScore=38.5579;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=2.123;QD=20.06;ReadPosRankSum=1.153;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:4,126:130:99:2641,273,0 chrXIII 508389 . G A 5178.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=19.6076;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.31;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5178,508,0 chrXIII 508549 . T C 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=183;Dels=0.00;FS=3.680;HaplotypeScore=15.2637;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.628;QD=22.82;ReadPosRankSum=1.713;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4176,441,0 chrXIII 508768 . G A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.91;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3861,391,0 chrXIII 508918 . T G 4405.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.43;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4405,460,0 chrXIII 509333 . G A 5334.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=43.2718;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.86;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5334,526,0 chrXIII 510091 . G A 5767.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=22.6133;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=23.44;SB=-3.372e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5767,568,0 chrXIII 510373 . A T 5574.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.4138;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.67;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5574,547,0 chrXIII 510615 . A C 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=160;Dels=0.00;FS=3.016;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.801;QD=23.58;ReadPosRankSum=2.370;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:2,153:160:99:3772,391,0 chrXIII 510966 . G A 7269.01 PASS AC=2;AF=1.00;AN=2;DP=354;Dels=0.00;FS=0.000;HaplotypeScore=12.7842;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.53;SB=-4.439e+03 GT:AD:DP:GQ:PL 1/1:0,354:354:99:7269,772,0 chrXIII 510989 . G A 7122.01 PASS AC=2;AF=1.00;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.89;SB=-3.735e+03 GT:AD:DP:GQ:PL 1/1:0,338:341:99:7122,733,0 chrXIII 511205 . G A 4040.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=17.6077;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.49;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:4040,409,0 chrXIII 511256 . A G 4904.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.01;FS=0.000;HaplotypeScore=25.8105;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=24.77;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4904,502,0 chrXIII 511679 . A T 1766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.0025;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.529;QD=24.53;ReadPosRankSum=1.684;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1799,174,0 chrXIII 511826 . G A 1241 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.0092;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=25.33;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1274,141,0 chrXIII 511892 . T A 1175 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;QD=27.98;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1208,120,0 chrXIII 511911 . C T 1041 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=24.79;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1074,108,0 chrXIII 511953 . G A 1505 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=27.87;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1538,150,0 chrXIII 512104 . C T 1676 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=39.25;MQ0=0;QD=16.59;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1709,183,0 chrXIII 512124 . T C 2104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;MQRankSum=-1.211;QD=18.62;ReadPosRankSum=1.701;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2137,225,0 chrXIII 512151 . T C 2146 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=20.06;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2179,231,0 chrXIII 512161 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=20.83;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2345,246,0 chrXIII 512189 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=23.65;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2540,255,0 chrXIII 512242 . G T 2385 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=22.50;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2418,240,0 chrXIII 512254 . C A 2260 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=22.16;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2293,225,0 chrXIII 512272 . G A 2174 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=20.13;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2207,228,0 chrXIII 512330 . C T 2874 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=36.91;MQ0=0;QD=20.68;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2907,318,0 chrXIII 512343 . G T 2929 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=22.71;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2962,321,0 chrXIII 512366 . A G 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=3.411;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;MQRankSum=-0.153;QD=19.34;ReadPosRankSum=1.656;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2663,291,0 chrXIII 512368 . A G 2530 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=0;QD=19.02;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2563,288,0 chrXIII 512447 . A T 2880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.337;DP=149;Dels=0.00;FS=5.011;HaplotypeScore=3.7150;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;MQRankSum=1.221;QD=19.33;ReadPosRankSum=1.337;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2913,289,0 chrXIII 512449 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=18.34;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2803,291,0 chrXIII 512520 . A G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;QD=18.20;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3349,360,0 chrXIII 512540 . G A 3699.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=141.0971;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=0;QD=17.78;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3699,372,0 chrXIII 512558 . A G 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=4.126;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=36.58;MQ0=0;MQRankSum=1.483;QD=11.83;ReadPosRankSum=1.713;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:2174,234,0 chrXIII 512693 . G C 6251.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=7.2994;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;QD=24.61;SB=-3.254e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:6251,652,0 chrXIII 512725 . T C 5358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=234;Dels=0.00;FS=4.809;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=0;MQRankSum=1.033;QD=22.90;ReadPosRankSum=1.702;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:1,232:234:99:5358,547,0 chrXIII 512809 . G A 4148.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;QD=22.67;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4148,409,0 chrXIII 512964 . A G 4139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=3.688;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;MQRankSum=-0.918;QD=24.93;ReadPosRankSum=1.711;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4139,433,0 chrXIII 513020 . A G 4333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=172;Dels=0.00;FS=4.721;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=0.967;QD=25.19;ReadPosRankSum=1.712;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4333,454,0 chrXIII 513049 . C T 4182.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=26.30;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4182,418,0 chrXIII 513096 . T C 2919 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=21.15;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2952,303,0 chrXIII 513097 . T C 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;MQRankSum=0.300;QD=20.99;ReadPosRankSum=1.706;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2846,297,0 chrXIII 513130 . T C 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=147;Dels=0.00;FS=7.399;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;MQRankSum=-1.196;QD=20.35;ReadPosRankSum=2.282;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3025,324,0 chrXIII 513160 . C T 2730 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=21.50;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2763,279,0 chrXIII 513161 . A G 2589 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=19.76;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2622,282,0 chrXIII 513198 . T C 3628.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.4829;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.96;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3628,370,0 chrXIII 513259 . C A 4011.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.4866;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.05;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4011,409,0 chrXIII 513285 . G A 3067 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=23.06;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3100,301,0 chrXIII 513345 . T C 1669 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=19.64;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1702,183,0 chrXIII 513350 . G A 1685 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;QD=20.80;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1718,180,0 chrXIII 513352 . G T 1682 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.23;MQ0=0;QD=20.51;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1715,180,0 chrXIII 513381 . T C 1770 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=17.88;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1803,198,0 chrXIII 513415 . G A 2118 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=18.74;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2151,219,0 chrXIII 513420 . A T 2128 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;QD=18.50;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2161,219,0 chrXIII 513425 . A T 2069 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=113;Dels=0.00;FS=5.843;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;MQRankSum=2.849;QD=18.31;ReadPosRankSum=2.920;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2102,207,0 chrXIII 513778 . C G 5406.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.0289;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.35;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5406,559,0 chrXIII 514118 . G A 1324 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=17.65;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1357,138,0 chrXIII 514124 . T A 1366 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=0;QD=17.51;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1399,138,0 chrXIII 514127 . T C 1216 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=0;QD=15.59;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1249,129,0 chrXIII 514146 . C T 1538 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=17.88;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1571,159,0 chrXIII 514194 . A G 1291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=4.094;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;MQRankSum=-0.067;QD=16.55;ReadPosRankSum=1.687;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1324,138,0 chrXIII 514210 . G C 1460 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.28;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1493,153,0 chrXIII 514327 . T C 1823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=98;Dels=0.00;FS=6.431;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=0.389;QD=18.60;ReadPosRankSum=2.400;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1856,192,0 chrXIII 514342 . C T 2381 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.1926;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=20.89;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2414,246,0 chrXIII 514631 . A T 5550.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.02;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.89;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5550,547,0 chrXIII 515340 . A G 4204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=189;Dels=0.00;FS=3.887;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.509;QD=22.24;ReadPosRankSum=1.695;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:1,185:189:99:4204,450,0 chrXIII 516109 . G A 4471.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.98;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4471,454,0 chrXIII 516134 . A G 3971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=173;Dels=0.00;FS=6.950;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.518;QD=22.95;ReadPosRankSum=2.364;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3971,412,0 chrXIII 517277 . G A 2916 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.27;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2949,295,0 chrXIII 526917 . C T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.93;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3553,367,0 chrXIII 528857 . T C 3451.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.55;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3451,349,0 chrXIII 528955 . T C 3821.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.9889;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.30;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3821,397,0 chrXIII 530509 . C T 3299.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.80;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3299,322,0 chrXIII 530525 . T G 2875 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.64;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2908,306,0 chrXIII 532942 . A G 3024 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.79;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3057,313,0 chrXIII 535747 . A G 1354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=57;Dels=0.00;FS=2.706;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.759;QD=23.75;ReadPosRankSum=2.364;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1387,144,0 chrXIII 539686 . A C 5669.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=14.0123;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.76;SB=-2.935e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5669,571,0 chrXIII 540088 . C A 4688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=199;Dels=0.00;FS=3.307;HaplotypeScore=10.2306;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.923;QD=23.56;ReadPosRankSum=1.046;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4688,481,0 chrXIII 540307 . T C 2762 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5554;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.31;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2795,283,0 chrXIII 540446 . A T 3801.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.68;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3801,379,0 chrXIII 540780 . C T 3816.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3816,373,0 chrXIII 541095 . T A 2973 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3006,309,0 chrXIII 541134 . A G 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=5.601;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.431;QD=25.05;ReadPosRankSum=1.657;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3482,358,0 chrXIII 541219 . C T 4206.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.96;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4206,415,0 chrXIII 541257 . T C 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.574;QD=22.54;ReadPosRankSum=1.664;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3449,372,0 chrXIII 542277 . C T 3683.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.8663;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.80;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3683,376,0 chrXIII 542926 . T A 3552.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8782;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=27.11;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3552,358,0 chrXIII 543392 . T C 3919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.299;QD=24.49;ReadPosRankSum=1.689;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3919,406,0 chrXIII 544007 . A G 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0517;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=25.09;ReadPosRankSum=1.706;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3387,340,0 chrXIII 545520 . C T 6048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=16.6933;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.619;QD=24.69;ReadPosRankSum=-0.813;SB=-3.316e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:6048,601,0 chrXIII 547537 . C T 3701.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.41;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3701,361,0 chrXIII 547643 . G A 3929.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.73;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3929,382,0 chrXIII 548022 . G T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3390,343,0 chrXIII 549308 . C T 3066 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.21;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:3099,307,0 chrXIII 549979 . G A 2984 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.64;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3017,295,0 chrXIII 552041 . G A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.61;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3494,343,0 chrXIII 552364 . G A 4118.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.90;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4118,406,0 chrXIII 554421 . T C 3283.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.96;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3283,345,0 chrXIII 554664 . A G 551 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.96;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,22:23:63:584,63,0 chrXIII 554724 . T G 995 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.27;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1028,111,0 chrXIII 554817 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=28.80;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2913,286,0 chrXIII 554844 . G A 2948 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=26.56;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2981,301,0 chrXIII 555036 . G C 4570.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.0670;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.56;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4570,481,0 chrXIII 555078 . A G 4631.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.1099;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.51;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4631,472,0 chrXIII 555522 . C T 4986.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.38;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4986,493,0 chrXIII 555756 . G A 4858.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.66;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:4858,484,0 chrXIII 555852 . G A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.69;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3695,364,0 chrXIII 556209 . T C 2901 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.98;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2934,309,0 chrXIII 556437 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.82;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2010,192,0 chrXIII 556842 . G A 5240.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.83;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5240,514,0 chrXIII 557358 . G A 2839 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.71;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2872,288,0 chrXIII 557425 . G A 2252 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2285,234,0 chrXIII 558486 . T C 4334.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.69;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4334,451,0 chrXIII 558853 . A G 1984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=0.563;QD=23.90;ReadPosRankSum=1.690;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:2017,204,0 chrXIII 558877 . G A 1375 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=52.1914;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=21.48;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1408,138,0 chrXIII 558987 . A G 1626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.102;QD=18.91;ReadPosRankSum=1.691;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1659,171,0 chrXIII 559132 . G T 2134 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.71;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2167,219,0 chrXIII 559312 . A C 3850.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=26.55;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3850,403,0 chrXIII 559878 . G A 2743 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.2736;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.89;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2776,274,0 chrXIII 560210 . A C 4113.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:4113,427,0 chrXIII 560261 . G C 3605.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=25.75;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3605,367,0 chrXIII 560317 . C T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.01;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3255,325,0 chrXIII 560337 . T C 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=3.749;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.860;QD=21.47;ReadPosRankSum=1.685;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3189,325,0 chrXIII 560911 . G A 3626.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.01;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=21.58;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3626,361,0 chrXIII 560915 . A G 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=4.932;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.661;QD=21.18;ReadPosRankSum=1.711;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3495,358,0 chrXIII 561020 . G A 5772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=214;Dels=0.00;FS=6.711;HaplotypeScore=19.2048;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.157;QD=26.97;ReadPosRankSum=1.240;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,210:214:99:5772,571,0 chrXIII 561390 . C T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.76;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4135,424,0 chrXIII 561510 . A G 4071.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4071,412,0 chrXIII 561662 . A G 1748 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1781,186,0 chrXIII 561922 . A T 946 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:99:979,102,0 chrXIII 562601 . C T 4246.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.5858;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=23.08;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4246,442,0 chrXIII 562620 . T C 4545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=188;Dels=0.00;FS=8.574;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.729;QD=24.18;ReadPosRankSum=2.410;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:4545,463,0 chrXIII 562752 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.259;QD=24.81;ReadPosRankSum=1.632;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3448,357,0 chrXIII 562796 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.01;FS=3.367;HaplotypeScore=11.4680;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=0.228;QD=23.68;ReadPosRankSum=1.664;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3623,370,0 chrXIII 562848 . T C 2709 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=110.0951;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=21.50;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2742,288,0 chrXIII 562900 . G T 2425 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=102.1377;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=20.04;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2458,243,0 chrXIII 562933 . T C 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=122;Dels=0.00;FS=2.979;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-0.071;QD=20.25;ReadPosRankSum=2.389;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2504,255,0 chrXIII 562955 . T C 2738 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.22;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2771,291,0 chrXIII 563052 . C G 2800 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=24.14;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2833,288,0 chrXIII 563079 . G A 2977 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=20.96;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3010,295,0 chrXIII 563083 . A G 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=4.502;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=0.455;QD=19.38;ReadPosRankSum=1.683;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:2804,291,0 chrXIII 563456 . G A 5480.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=16.3293;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.57;SB=-2.905e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5480,565,0 chrXIII 563599 . G A 5517.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=12.8816;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.41;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5517,556,0 chrXIII 563796 . G T 3611.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=20.87;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3611,358,0 chrXIII 563800 . G T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.6779;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=18.77;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3379,334,0 chrXIII 563933 . G A 4150.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.46;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4150,418,0 chrXIII 564175 . G A 2061 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.7530;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2094,207,0 chrXIII 564541 . T A 3673.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3673,370,0 chrXIII 565076 . C T 4694.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.35;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4694,460,0 chrXIII 565181 . T C 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=138;Dels=0.00;FS=5.538;HaplotypeScore=13.8061;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.707;QD=21.04;ReadPosRankSum=1.707;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:2936,315,0 chrXIII 565236 . C T 3517.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=15.7627;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.45;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3517,349,0 chrXIII 565315 . T A 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.562;QD=25.94;ReadPosRankSum=1.710;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3994,394,0 chrXIII 566017 . A G 3154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=131;Dels=0.00;FS=4.183;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.362;QD=24.08;ReadPosRankSum=1.706;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3187,330,0 chrXIII 566147 . G A 4176.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.5194;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.28;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4176,412,0 chrXIII 566257 . C T 4763.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=25.07;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:4763,487,0 chrXIII 566485 . T C 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=150;Dels=0.00;FS=10.434;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=0.503;QD=21.99;ReadPosRankSum=2.953;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:3,145:150:99:3298,342,0 chrXIII 566498 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.3636;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.22;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3400,340,0 chrXIII 566527 . T A 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=3.912;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.953;QD=21.54;ReadPosRankSum=1.667;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3447,343,0 chrXIII 566650 . G A 4056.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.04;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4056,400,0 chrXIII 566965 . A G 3821.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=24.18;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3821,385,0 chrXIII 566975 . T C 3747.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.3523;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.42;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3747,388,0 chrXIII 567013 . A T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.42;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3320,331,0 chrXIII 567075 . C T 3926.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.9635;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.39;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3926,385,0 chrXIII 567163 . A G 4391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.3314;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.278;QD=24.81;ReadPosRankSum=2.551;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:4391,448,0 chrXIII 567577 . C T 3914.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=24.77;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3914,397,0 chrXIII 567592 . T A 3622.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=24.31;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3622,364,0 chrXIII 567978 . T C 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=151;Dels=0.00;FS=4.489;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-1.662;QD=24.28;ReadPosRankSum=1.616;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3667,384,0 chrXIII 568056 . C G 3831.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=23.50;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3831,397,0 chrXIII 568072 . T A 3696.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=23.85;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3696,364,0 chrXIII 568174 . A C 2407 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.6707;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.50;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2440,249,0 chrXIII 568210 . G C 2346 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.78;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2379,243,0 chrXIII 568220 . G A 2599 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.84;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2632,256,0 chrXIII 568443 . G A 3422.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=26.32;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3422,334,0 chrXIII 568527 . G A 3971.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=25.79;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3971,385,0 chrXIII 568577 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=165;Dels=0.00;FS=7.919;HaplotypeScore=5.8801;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-0.618;QD=19.98;ReadPosRankSum=2.419;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:2,159:165:99:3296,340,0 chrXIII 568585 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=20.36;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3502,358,0 chrXIII 569109 . T A 7075.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=23.9399;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.23;SB=-3.582e+03 GT:AD:DP:GQ:PL 1/1:0,292:292:99:7075,733,0 chrXIII 569786 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4034,406,0 chrXIII 569867 . C T 3124 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.47;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:3157,313,0 chrXIII 570462 . A G 2787 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2820,291,0 chrXIII 571024 . C T 3996.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.2507;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=24.52;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3996,397,0 chrXIII 571039 . T C 3483.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.4068;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=22.62;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3483,360,0 chrXIII 571067 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.330;QD=23.69;ReadPosRankSum=1.643;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3695,376,0 chrXIII 571144 . A G 4301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.1979;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.423;QD=24.86;ReadPosRankSum=1.712;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4301,442,0 chrXIII 571170 . G T 4108.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=24.75;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4108,409,0 chrXIII 571183 . T A 3739.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.97;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3739,367,0 chrXIII 571224 . A G 2489 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=16.93;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:2522,264,0 chrXIII 571441 . T C 3858.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=25.22;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3858,394,0 chrXIII 571835 . G A 4467.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6384;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.38;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4467,454,0 chrXIII 572003 . T C 4270.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.21;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4270,430,0 chrXIII 572476 . T C 5082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=203;Dels=0.00;FS=3.369;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.218;QD=25.03;ReadPosRankSum=1.715;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:5082,523,0 chrXIII 572646 . C T 2760 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.79;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2793,285,0 chrXIII 572799 . A G 2288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=95;Dels=0.00;FS=6.256;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-1.402;QD=24.08;ReadPosRankSum=2.371;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:2,92:95:99:2321,234,0 chrXIII 572826 . T C 2037 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.63;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2070,213,0 chrXIII 572957 . G A 1726 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=23.32;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1759,180,0 chrXIII 572966 . G T 1663 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=22.47;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1696,174,0 chrXIII 572969 . G A 1735 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=23.45;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1768,174,0 chrXIII 572995 . C T 1803 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=22.82;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1836,183,0 chrXIII 573126 . G T 2825 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=25.22;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2858,286,0 chrXIII 573151 . C T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.1808;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=25.29;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3288,331,0 chrXIII 573263 . A G 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.162;QD=25.10;ReadPosRankSum=-0.088;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3991,426,0 chrXIII 573340 . T A 4371.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=26.98;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4371,430,0 chrXIII 573404 . C T 5854.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=20.3416;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.60;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5854,574,0 chrXIII 573842 . C T 2832 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.12;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2865,280,0 chrXIII 574079 . G A 2608 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.73;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2641,273,0 chrXIII 574080 . C G 2559 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.69;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2592,270,0 chrXIII 574719 . A T 6789.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=11.8526;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.11;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:6789,679,0 chrXIII 574866 . T C 4870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=210;Dels=0.00;FS=10.411;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.392;QD=23.19;ReadPosRankSum=2.909;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:3,207:210:99:4870,502,0 chrXIII 575028 . T C 6019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=15.7704;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.616;QD=24.98;ReadPosRankSum=1.688;SB=-3.195e+03 GT:AD:DP:GQ:PL 1/1:1,237:241:99:6019,619,0 chrXIII 575060 . A G 5862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=237;Dels=0.00;FS=15.202;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.894;QD=24.73;ReadPosRankSum=3.423;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:4,229:237:99:5862,604,0 chrXIII 575098 . G A 6087.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=14.7807;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=26.82;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:6087,598,0 chrXIII 575128 . G T 5532.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=15.1150;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.48;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5532,562,0 chrXIII 575668 . T C 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=4.141;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.722;QD=23.33;ReadPosRankSum=1.624;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2273,237,0 chrXIII 576343 . C T 3275.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3275,334,0 chrXIII 577405 . C T 3959.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.44;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3959,391,0 chrXIII 577667 . G C 3925.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.4061;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.44;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3925,400,0 chrXIII 577768 . A G 4589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.0349;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.300;QD=25.64;ReadPosRankSum=1.713;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4589,469,0 chrXIII 578132 . T C 3321.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.29;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3321,345,0 chrXIII 578498 . T C 2071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=3.644;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.492;QD=25.26;ReadPosRankSum=1.518;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:2104,213,0 chrXIII 578615 . T G 2181 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2214,228,0 chrXIII 579159 . T C 3113 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.3933;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.72;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3146,322,0 chrXIII 579347 . T C 4069.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.12;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4069,409,0 chrXIII 579452 . T C 6057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.267;DP=243;Dels=0.00;FS=9.103;HaplotypeScore=13.3761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.158;QD=24.93;ReadPosRankSum=3.375;SB=-3.263e+03 GT:AD:DP:GQ:PL 1/1:4,239:243:99:6057,622,0 chrXIII 579563 . C T 4411.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4411,448,0 chrXIII 579707 . A G 5136.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.5322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.47;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:5136,529,0 chrXIII 579968 . T C 3424.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.5023;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.83;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3424,357,0 chrXIII 580121 . A G 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=167;Dels=0.00;FS=11.700;HaplotypeScore=13.0352;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.130;QD=24.37;ReadPosRankSum=2.957;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:3,160:167:99:4070,415,0 chrXIII 581966 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.96;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3200,325,0 chrXIII 582482 . T C 5805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=250;Dels=0.00;FS=4.059;HaplotypeScore=19.9632;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.241;QD=23.22;ReadPosRankSum=1.704;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:1,246:250:99:5805,589,0 chrXIII 582716 . T C 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=142;Dels=0.00;FS=10.048;HaplotypeScore=7.1853;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.095;QD=22.25;ReadPosRankSum=2.363;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3193,333,0 chrXIII 582869 . A G 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=142;Dels=0.00;FS=8.950;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.199;QD=25.57;ReadPosRankSum=2.363;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3631,364,0 chrXIII 583556 . A G 4822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=206;Dels=0.00;FS=3.053;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.093;QD=23.41;ReadPosRankSum=1.715;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4822,499,0 chrXIII 583831 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=163;Dels=0.00;FS=5.707;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.974;QD=20.34;ReadPosRankSum=1.689;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:3315,342,0 chrXIII 584026 . T C 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=99;Dels=0.00;FS=3.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.729;QD=23.14;ReadPosRankSum=2.400;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2324,237,0 chrXIII 584211 . A C 1824 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.69;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1857,192,0 chrXIII 584328 . C T 2484 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2517,252,0 chrXIII 584569 . C T 5194.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.6452;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.64;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5194,511,0 chrXIII 584623 . T C 4201.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.59;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4201,439,0 chrXIII 584832 . A G 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.428;QD=22.60;ReadPosRankSum=1.713;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4136,424,0 chrXIII 584970 . G A 3936.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.60;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3936,388,0 chrXIII 585021 . T G 3826.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.34;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3826,394,0 chrXIII 585141 . A G 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-1.039;QD=23.56;ReadPosRankSum=1.683;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3345,346,0 chrXIII 585165 . T C 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=139;Dels=0.00;FS=6.183;HaplotypeScore=8.7477;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.786;QD=21.12;ReadPosRankSum=2.395;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:3,134:139:99:2969,315,0 chrXIII 585609 . A G 2706 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.27;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2739,285,0 chrXIII 585807 . A T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.80;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3350,334,0 chrXIII 585859 . G A 3351.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.3125;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.64;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3351,346,0 chrXIII 585987 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.4445;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.933;QD=25.23;ReadPosRankSum=1.684;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3633,370,0 chrXIII 586147 . C G 4049.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.8638;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.69;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4049,421,0 chrXIII 586726 . T A 3034 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=25.93;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3067,304,0 chrXIII 586744 . C T 2559 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=24.84;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2592,256,0 chrXIII 586759 . T C 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=91;Dels=0.00;FS=9.448;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=0.717;QD=23.58;ReadPosRankSum=2.396;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2179,222,0 chrXIII 586795 . T G 2037 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.7807;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.63;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2070,210,0 chrXIII 587257 . T G 3976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.3584;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.118;QD=24.70;ReadPosRankSum=1.711;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3976,412,0 chrXIII 587493 . T G 1463 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.17;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1496,150,0 chrXIII 587559 . T G 2455 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2488,252,0 chrXIII 587600 . A G 1802 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.95;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1835,192,0 chrXIII 587695 . T C 81.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.049;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=1.380;QD=3.26;ReadPosRankSum=-2.634;SB=-5.551e+01 GT:AD:DP:GQ:PL 1/1:3,22:25:12:114,12,0 chrXIII 587939 . A G 5557.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=26.21;SB=-3.069e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5557,559,0 chrXIII 587969 . T C 5282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.392;DP=231;Dels=0.00;FS=13.592;HaplotypeScore=12.8091;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.330;QD=22.87;ReadPosRankSum=3.392;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:4,226:231:99:5282,559,0 chrXIII 588112 . C T 4946.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=18.4522;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.00;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4946,487,0 chrXIII 588348 . G A 5008.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=26.92;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5008,514,0 chrXIII 588573 . C T 3058 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.359;DP=248;Dels=0.00;FS=26.196;HaplotypeScore=25.7051;MLEAC=2;MLEAF=1.00;MQ=42.66;MQ0=0;MQRankSum=0.160;QD=12.33;ReadPosRankSum=2.919;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:32,215:248:99:3091,318,0 chrXIII 588576 . T C 2630 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-4.732;DP=234;Dels=0.00;FS=22.929;HaplotypeScore=25.7051;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;MQRankSum=0.503;QD=11.24;ReadPosRankSum=3.882;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:33,200:234:99:2663,169,0 chrXIII 588579 . A T 2810 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=230;Dels=0.00;FS=5.398;HaplotypeScore=40.0893;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;MQRankSum=-0.715;QD=12.22;ReadPosRankSum=1.715;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,200:230:99:2843,288,0 chrXIII 588585 . T C 2593 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.066;DP=284;Dels=0.00;FS=7.888;HaplotypeScore=83.2452;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;MQRankSum=0.278;QD=9.13;ReadPosRankSum=9.239;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:81,200:284:99:2626,133,0 chrXIII 588609 . C T 826.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.283;DP=259;Dels=0.00;FS=0.496;HaplotypeScore=390.9476;MLEAC=1;MLEAF=0.500;MQ=31.93;MQ0=0;MQRankSum=-1.375;QD=3.19;ReadPosRankSum=-1.544;SB=-6.940e+02 GT:AD:DP:GQ:PL 0/1:152,107:259:99:856,0,531 chrXIII 588615 . C T 508.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.413;DP=264;Dels=0.00;FS=1.014;HaplotypeScore=274.0039;MLEAC=1;MLEAF=0.500;MQ=30.97;MQ0=0;MQRankSum=0.120;QD=1.92;ReadPosRankSum=-2.160;SB=-1.061e+03 GT:AD:DP:GQ:PL 0/1:119,145:264:99:538,0,656 chrXIII 588621 . C T 172.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.244;DP=240;Dels=0.00;FS=1.669;HaplotypeScore=172.1163;MLEAC=1;MLEAF=0.500;MQ=29.69;MQ0=0;MQRankSum=-0.059;QD=0.72;ReadPosRankSum=-3.330;SB=-1.131e+03 GT:AD:DP:GQ:PL 0/1:110,130:240:99:202,0,806 chrXIII 588624 . T C 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.484;DP=240;Dels=0.00;FS=1.381;HaplotypeScore=201.9464;MLEAC=1;MLEAF=0.500;MQ=29.69;MQ0=0;MQRankSum=0.849;QD=0.08;ReadPosRankSum=-1.913;SB=-2.540e+02 GT:AD:DP:GQ:PL 0/1:196,44:240:48:48,0,1241 chrXIII 588627 . C T 106.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.252;DP=245;Dels=0.01;FS=4.355;HaplotypeScore=179.1275;MLEAC=1;MLEAF=0.500;MQ=29.77;MQ0=0;MQRankSum=-1.453;QD=0.43;ReadPosRankSum=-3.641;SB=-5.280e+02 GT:AD:DP:GQ:PL 0/1:174,68:242:99:136,0,1048 chrXIII 588645 . T C 1080.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.525;DP=225;Dels=0.00;FS=6.645;HaplotypeScore=161.8515;MLEAC=1;MLEAF=0.500;MQ=31.78;MQ0=0;MQRankSum=1.079;QD=4.80;ReadPosRankSum=-1.117;SB=-1.622e+03 GT:AD:DP:GQ:PL 0/1:60,163:225:99:1110,0,437 chrXIII 588660 . C T 744.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.283;DP=271;Dels=0.00;FS=19.102;HaplotypeScore=193.2438;MLEAC=1;MLEAF=0.500;MQ=35.60;MQ0=0;MQRankSum=2.518;QD=2.75;ReadPosRankSum=0.179;SB=-2.939e+03 GT:AD:DP:GQ:PL 0/1:43,227:270:99:774,0,464 chrXIII 588661 . T G 424.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.518;DP=276;Dels=0.00;FS=15.576;HaplotypeScore=193.2438;MLEAC=1;MLEAF=0.500;MQ=35.63;MQ0=0;MQRankSum=-4.427;QD=1.54;ReadPosRankSum=0.011;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:235,41:276:99:454,0,766 chrXIII 588678 . A C 3127.02 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.216;DP=284;Dels=0.00;FS=24.292;HaplotypeScore=3.7766;MLEAC=2;MLEAF=1.00;MQ=41.02;MQ0=0;MQRankSum=4.398;QD=11.01;ReadPosRankSum=8.968;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:35,249:284:25:3160,25,0 chrXIII 588681 . C T 3515.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=5.380;DP=274;Dels=0.00;FS=36.358;HaplotypeScore=3.7828;MLEAC=2;MLEAF=1.00;MQ=42.12;MQ0=0;MQRankSum=4.151;QD=12.83;ReadPosRankSum=7.439;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:22,252:274:86:3515,86,0 chrXIII 588684 . G C 3527.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.164;DP=263;Dels=0.00;FS=8.054;HaplotypeScore=6.9375;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;MQRankSum=0.804;QD=13.41;ReadPosRankSum=2.430;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:2,250:263:99:3527,366,0 chrXIII 588927 . T A 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.9877;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;MQRankSum=-0.737;QD=21.93;ReadPosRankSum=2.183;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3838,394,0 chrXIII 589273 . C T 3348.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3348,331,0 chrXIII 589360 . A C 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=142;Dels=0.00;FS=5.966;HaplotypeScore=11.5516;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.236;QD=24.38;ReadPosRankSum=2.936;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:3,138:142:99:3462,355,0 chrXIII 589414 . A G 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=3.621;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.448;QD=25.13;ReadPosRankSum=1.675;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:3124,324,0 chrXIII 589588 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.77;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3428,355,0 chrXIII 589854 . A G 2400 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2433,249,0 chrXIII 590222 . T C 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.706;QD=22.88;ReadPosRankSum=1.689;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3729,393,0 chrXIII 590322 . T C 4666.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=17.9591;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.54;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4666,498,0 chrXIII 590486 . T C 4518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=175;Dels=0.00;FS=6.090;HaplotypeScore=12.9717;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.328;QD=25.82;ReadPosRankSum=2.936;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:3,169:175:99:4518,454,0 chrXIII 590607 . C T 4061.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.6485;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.83;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4061,394,0 chrXIII 590621 . T C 3678.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.77;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3678,382,0 chrXIII 590779 . G A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.19;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3275,336,0 chrXIII 590865 . A G 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=1.665;QD=23.75;ReadPosRankSum=1.710;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3705,382,0 chrXIII 591086 . C T 4050.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.96;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4050,397,0 chrXIII 591144 . A G 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=153;Dels=0.00;FS=4.386;HaplotypeScore=9.6713;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-1.227;QD=22.16;ReadPosRankSum=1.709;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3390,354,0 chrXIII 591198 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.95;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3709,385,0 chrXIII 591204 . T C 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-1.028;QD=20.20;ReadPosRankSum=1.677;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3798,391,0 chrXIII 591330 . G A 4600.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=19.0975;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4600,475,0 chrXIII 591723 . A G 8306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.300;DP=347;Dels=0.00;FS=14.992;HaplotypeScore=25.8642;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.019;QD=23.94;ReadPosRankSum=3.366;SB=-4.033e+03 GT:AD:DP:GQ:PL 1/1:4,340:347:99:8306,844,0 chrXIII 591795 . A G 8686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=16.1878;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.927;QD=24.61;ReadPosRankSum=1.722;SB=-3.849e+03 GT:AD:DP:GQ:PL 1/1:1,352:353:99:8686,857,0 chrXIII 591930 . G A 6940.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=10.5941;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.68;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:0,306:306:99:6940,697,0 chrXIII 592037 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=13.3083;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.01;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3070,301,0 chrXIII 592096 . G A 4031.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.28;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4031,403,0 chrXIII 592200 . C T 4422.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.32;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4422,433,0 chrXIII 592335 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.99;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3575,361,0 chrXIII 592371 . G A 3627.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.53;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3627,364,0 chrXIII 592658 . T G 5752.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.57;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:0,239:244:99:5752,586,0 chrXIII 592706 . T C 6423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=281;Dels=0.00;FS=10.611;HaplotypeScore=13.1804;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.164;QD=22.86;ReadPosRankSum=2.396;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:2,275:281:99:6423,664,0 chrXIII 592735 . T C 5640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=257;Dels=0.00;FS=10.066;HaplotypeScore=20.8775;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.141;QD=21.95;ReadPosRankSum=2.421;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:2,255:257:99:5640,574,0 chrXIII 594280 . T A 5767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=244;Dels=0.00;FS=3.229;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=1.207;QD=23.64;ReadPosRankSum=1.675;SB=-3.147e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:5767,583,0 chrXIII 594659 . A G 5237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=3.361;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.631;QD=25.30;ReadPosRankSum=1.698;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:5237,538,0 chrXIII 595437 . C T 4117.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.65;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4117,418,0 chrXIII 595697 . T C 4001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.119;QD=27.22;ReadPosRankSum=1.685;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:4001,403,0 chrXIII 596239 . A G 4510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.382;QD=23.86;ReadPosRankSum=1.714;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4510,454,0 chrXIII 596404 . G A 4417.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.8056;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.95;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4417,433,0 chrXIII 596670 . A G 3958.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.04;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3958,400,0 chrXIII 596706 . A C 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.693;QD=25.31;ReadPosRankSum=1.705;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3290,342,0 chrXIII 597167 . A G 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.1437;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.122;QD=23.58;ReadPosRankSum=1.659;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3372,343,0 chrXIII 597636 . A C 3866.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.94;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3866,397,0 chrXIII 597709 . G C 2831 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.02;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2864,300,0 chrXIII 597926 . G T 2879 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.0525;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2912,292,0 chrXIII 598154 . G A 5078.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.91;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5078,517,0 chrXIII 598391 . G A 4783.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.4276;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.53;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4783,481,0 chrXIII 599192 . T C 3497.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.45;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3497,361,0 chrXIII 599730 . A G 3982.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=192;Dels=0.00;FS=3.021;HaplotypeScore=1.6120;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;MQRankSum=-0.582;QD=20.74;ReadPosRankSum=2.424;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:3982,409,0 chrXIII 599732 . C T 4104.01 SnpCluster AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=21.26;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4104,406,0 chrXIII 599735 . T C 4050.01 SnpCluster AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=20.05;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4050,415,0 chrXIII 599973 . C T 5024.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.6935;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=25.12;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5024,496,0 chrXIII 600354 . A G 3797.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=2;QD=22.47;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3797,391,0 chrXIII 600543 . A T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=2;QD=25.48;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3516,346,0 chrXIII 600558 . C T 3105 filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=11;QD=23.35;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:6,127:133:99:3138,316,0 chrXIII 600564 . T A 3124 filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.62;MQ0=16;QD=23.49;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:11,122:133:99:3157,310,0 chrXIII 600729 . C T 2981 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=4;QD=23.47;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3014,304,0 chrXIII 600819 . C T 2100 filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=32.95;MQ0=40;QD=17.07;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:19,104:123:99:2133,207,0 chrXIII 601201 . T C 5060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=4.409;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.929;QD=24.21;ReadPosRankSum=1.699;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:5060,511,0 chrXIII 601971 . T C 4781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=205;Dels=0.00;FS=3.560;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-0.566;QD=23.32;ReadPosRankSum=1.715;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:1,201:205:99:4781,484,0 chrXIII 602082 . C T 4619.01 filter AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=32.47;MQ0=4;QD=23.21;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4619,454,0 chrXIII 602255 . G A 5233.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=16.9024;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=24.45;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5233,526,0 chrXIII 602462 . T C 4940.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.46;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4940,511,0 chrXIII 603083 . T C 3417.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.730;DP=174;Dels=0.00;FS=2.155;HaplotypeScore=5.9648;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=14;MQRankSum=-0.075;QD=19.64;ReadPosRankSum=2.604;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:14,160:174:99:3417,331,0 chrXIII 603086 . T C 3437.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.9648;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=11;MQRankSum=0.468;QD=19.98;ReadPosRankSum=2.327;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:12,159:172:99:3437,352,0 chrXIII 605048 . C T 4562.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.1668;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.92;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4562,460,0 chrXIII 605479 . C T 2456 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.34;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2489,249,0 chrXIII 605879 . G T 2776 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.24;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2809,285,0 chrXIII 607863 . C T 5057.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.67;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5057,502,0 chrXIII 607996 . C T 4872.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.2695;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.19;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4872,493,0 chrXIII 609063 . G A 720.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.278;DP=373;Dels=0.00;FS=134.867;HaplotypeScore=25.8188;MLEAC=1;MLEAF=0.500;MQ=41.05;MQ0=58;MQRankSum=-6.725;QD=1.93;ReadPosRankSum=1.625;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:268,100:373:99:750,0,4872 chrXIII 609090 . T C 1492.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.781;DP=469;Dels=0.00;FS=28.274;HaplotypeScore=27.0099;MLEAC=1;MLEAF=0.500;MQ=41.55;MQ0=50;MQRankSum=-3.988;QD=3.18;ReadPosRankSum=-0.669;SB=-4.910e+02 GT:AD:DP:GQ:PL 0/1:323,146:469:99:1522,0,6077 chrXIII 609099 . G A 2069.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.295;DP=491;Dels=0.00;FS=18.253;HaplotypeScore=35.0600;MLEAC=1;MLEAF=0.500;MQ=41.65;MQ0=50;MQRankSum=-1.718;QD=4.21;ReadPosRankSum=-3.201;SB=-1.005e+03 GT:AD:DP:GQ:PL 0/1:313,178:491:99:2099,0,5792 chrXIII 609354 . A G 1290.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.376;DP=737;Dels=0.00;FS=16.369;HaplotypeScore=29.9384;MLEAC=1;MLEAF=0.500;MQ=48.82;MQ0=13;MQRankSum=-7.816;QD=1.75;ReadPosRankSum=2.829;SB=-3.240e+02 GT:AD:DP:GQ:PL 0/1:596,141:737:99:1320,0,11883 chrXIII 609370 . A G 2712.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.026;DP=678;Dels=0.00;FS=63.402;HaplotypeScore=111.0247;MLEAC=1;MLEAF=0.500;MQ=48.25;MQ0=21;MQRankSum=-5.657;QD=4.00;ReadPosRankSum=-6.250;SB=-1.005e+03 GT:AD:DP:GQ:PL 0/1:472,205:678:99:2742,0,8737 chrXIII 609384 . C T 1202.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.424;DP=576;Dels=0.00;FS=94.492;HaplotypeScore=112.3374;MLEAC=1;MLEAF=0.500;MQ=47.43;MQ0=29;MQRankSum=-3.521;QD=2.09;ReadPosRankSum=-10.131;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:452,118:576:99:1232,0,8126 chrXIII 609420 . G A 2180.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.434;DP=440;Dels=0.00;FS=33.708;HaplotypeScore=38.9275;MLEAC=1;MLEAF=0.500;MQ=42.86;MQ0=48;MQRankSum=-1.238;QD=4.95;ReadPosRankSum=-0.799;SB=-5.440e+02 GT:AD:DP:GQ:PL 0/1:242,198:440:99:2210,0,3728 chrXIII 609447 . T C 490.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.038;DP=340;Dels=0.00;FS=71.932;HaplotypeScore=33.0024;MLEAC=1;MLEAF=0.500;MQ=38.37;MQ0=41;MQRankSum=-5.997;QD=1.44;ReadPosRankSum=2.553;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:245,89:340:99:520,0,3989 chrXIII 609456 . G A 260.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.637;DP=313;Dels=0.00;FS=90.103;HaplotypeScore=27.7304;MLEAC=1;MLEAF=0.500;MQ=36.97;MQ0=35;MQRankSum=-4.785;QD=0.83;ReadPosRankSum=-0.629;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:237,74:313:99:290,0,4118 chrXIII 609489 . T C 6362.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.839;DP=352;Dels=0.00;FS=8.328;HaplotypeScore=46.4403;MLEAC=2;MLEAF=1.00;MQ=41.79;MQ0=19;MQRankSum=5.376;QD=18.07;ReadPosRankSum=3.553;SB=-2.916e+03 GT:AD:DP:GQ:PL 1/1:42,306:352:99:6362,592,0 chrXIII 609533 . G A 2018.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.410;DP=442;Dels=0.00;FS=0.000;HaplotypeScore=36.8827;MLEAC=1;MLEAF=0.500;MQ=46.24;MQ0=3;MQRankSum=-0.412;QD=4.57;ReadPosRankSum=0.960;SB=-1.175e+03 GT:AD:DP:GQ:PL 0/1:277,163:442:99:2048,0,5220 chrXIII 609570 . A T 3881.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;DP=458;Dels=0.03;FS=0.344;HaplotypeScore=70.0344;MLEAC=1;MLEAF=0.500;MQ=45.46;MQ0=0;MQRankSum=2.778;QD=8.47;ReadPosRankSum=0.021;SB=-2.112e+03 GT:AD:DP:GQ:PL 0/1:240,204:446:99:3881,0,4830 chrXIII 609576 . C T 4392.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.436;DP=437;Dels=0.00;FS=4.103;HaplotypeScore=88.7127;MLEAC=1;MLEAF=0.500;MQ=45.32;MQ0=0;MQRankSum=-1.950;QD=10.05;ReadPosRankSum=0.705;SB=-2.416e+03 GT:AD:DP:GQ:PL 0/1:212,223:436:99:4392,0,3563 chrXIII 609618 . T C 1679.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.257;DP=248;Dels=0.00;FS=13.769;HaplotypeScore=64.0546;MLEAC=1;MLEAF=0.500;MQ=38.57;MQ0=10;MQRankSum=3.775;QD=6.77;ReadPosRankSum=1.968;SB=-6.880e+02 GT:AD:DP:GQ:PL 0/1:121,122:248:99:1709,0,1817 chrXIII 609630 . C T 1062.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.577;DP=188;Dels=0.00;FS=6.776;HaplotypeScore=139.1249;MLEAC=1;MLEAF=0.500;MQ=33.99;MQ0=13;MQRankSum=4.169;QD=5.65;ReadPosRankSum=-2.333;SB=-3.570e+02 GT:AD:DP:GQ:PL 0/1:114,73:188:99:1092,0,970 chrXIII 609632 . A G 419.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.869;DP=180;Dels=0.00;FS=19.605;HaplotypeScore=138.3362;MLEAC=1;MLEAF=0.500;MQ=32.94;MQ0=14;MQRankSum=-3.966;QD=2.33;ReadPosRankSum=0.430;SB=-3.430e+02 GT:AD:DP:GQ:PL 0/1:126,53:180:99:449,0,1445 chrXIII 609636 . T C 579.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.736;DP=161;Dels=0.01;FS=0.640;HaplotypeScore=170.7408;MLEAC=1;MLEAF=0.500;MQ=31.05;MQ0=17;MQRankSum=-2.848;QD=3.60;ReadPosRankSum=4.660;SB=-6.420e+02 GT:AD:DP:GQ:PL 0/1:82,78:160:99:609,0,786 chrXIII 609637 . G A 322.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.617;DP=160;Dels=0.01;FS=38.866;HaplotypeScore=170.6911;MLEAC=1;MLEAF=0.500;MQ=30.72;MQ0=17;MQRankSum=-1.227;QD=2.01;ReadPosRankSum=-0.578;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:119,40:159:99:352,0,935 chrXIII 609639 . C T 106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.442;DP=149;Dels=0.00;FS=46.622;HaplotypeScore=193.5064;MLEAC=1;MLEAF=0.500;MQ=28.60;MQ0=19;MQRankSum=-1.063;QD=0.71;ReadPosRankSum=6.256;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:111,37:149:99:136,0,1033 chrXIII 609645 . T G 590.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.451;DP=128;Dels=0.00;FS=25.410;HaplotypeScore=98.5379;MLEAC=1;MLEAF=0.500;MQ=24.31;MQ0=25;MQRankSum=0.815;QD=4.61;ReadPosRankSum=-5.097;SB=-4.200e+02 GT:AD:DP:GQ:PL 0/1:74,54:128:99:620,0,287 chrXIII 609648 . T C 153.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.134;DP=122;Dels=0.00;FS=106.167;HaplotypeScore=56.3103;MLEAC=1;MLEAF=0.500;MQ=23.83;MQ0=28;MQRankSum=0.515;QD=1.25;ReadPosRankSum=4.950;SB=-5.698e+01 GT:AD:DP:GQ:PL 0/1:77,45:122:99:183,0,686 chrXIII 609651 . C T 424.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.089;DP=121;Dels=0.00;FS=94.396;HaplotypeScore=43.6315;MLEAC=1;MLEAF=0.500;MQ=23.14;MQ0=33;MQRankSum=1.758;QD=3.50;ReadPosRankSum=-3.817;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,32:121:99:454,0,323 chrXIII 609654 . T C 146.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.892;DP=129;Dels=0.00;FS=144.198;HaplotypeScore=55.9180;MLEAC=1;MLEAF=0.500;MQ=23.40;MQ0=34;MQRankSum=1.880;QD=1.13;ReadPosRankSum=5.216;SB=-2.802e+01 GT:AD:DP:GQ:PL 0/1:90,39:129:99:176,0,674 chrXIII 609660 . T C 539.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.632;DP=119;Dels=0.00;FS=112.695;HaplotypeScore=34.5906;MLEAC=1;MLEAF=0.500;MQ=23.07;MQ0=34;MQRankSum=2.258;QD=4.53;ReadPosRankSum=-6.150;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,40:119:99:569,0,299 chrXIII 609663 . T C 181.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.224;DP=121;Dels=0.00;FS=105.993;HaplotypeScore=24.2080;MLEAC=1;MLEAF=0.500;MQ=23.18;MQ0=34;MQRankSum=0.535;QD=1.50;ReadPosRankSum=3.980;SB=-6.602e+01 GT:AD:DP:GQ:PL 0/1:87,34:121:99:211,0,726 chrXIII 609666 . T C 199.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.732;DP=120;Dels=0.00;FS=104.558;HaplotypeScore=19.2790;MLEAC=1;MLEAF=0.500;MQ=23.12;MQ0=34;MQRankSum=1.135;QD=1.66;ReadPosRankSum=2.760;SB=-8.302e+01 GT:AD:DP:GQ:PL 0/1:86,34:120:99:229,0,733 chrXIII 609669 . A T 205.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;DP=124;Dels=0.00;FS=95.117;HaplotypeScore=19.3460;MLEAC=1;MLEAF=0.500;MQ=22.97;MQ0=37;MQRankSum=1.581;QD=1.65;ReadPosRankSum=2.016;SB=-1.000e+02 GT:AD:DP:GQ:PL 0/1:87,36:124:99:235,0,736 chrXIII 609672 . T C 193.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.693;DP=123;Dels=0.00;FS=93.805;HaplotypeScore=114.0513;MLEAC=1;MLEAF=0.500;MQ=22.76;MQ0=38;MQRankSum=1.718;QD=1.57;ReadPosRankSum=0.095;SB=-8.702e+01 GT:AD:DP:GQ:PL 0/1:86,37:123:99:223,0,672 chrXIII 609678 . T G 98.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.085;DP=118;Dels=0.00;FS=108.617;HaplotypeScore=148.9071;MLEAC=1;MLEAF=0.500;MQ=22.41;MQ0=39;MQRankSum=1.278;QD=0.83;ReadPosRankSum=-3.866;SB=-4.011e+00 GT:AD:DP:GQ:PL 0/1:92,26:118:99:128,0,688 chrXIII 609690 . G T 129.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;DP=112;Dels=0.00;FS=100.030;HaplotypeScore=29.8969;MLEAC=1;MLEAF=0.500;MQ=22.79;MQ0=35;MQRankSum=1.974;QD=1.15;ReadPosRankSum=-6.593;SB=-3.011e+00 GT:AD:DP:GQ:PL 0/1:88,24:112:99:159,0,162 chrXIII 609699 . T A 575.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;DP=130;Dels=0.00;FS=56.499;HaplotypeScore=46.2704;MLEAC=1;MLEAF=0.500;MQ=24.24;MQ0=32;MQRankSum=3.502;QD=4.42;ReadPosRankSum=2.606;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,58:130:99:605,0,482 chrXIII 609708 . C T 769.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;DP=134;Dels=0.00;FS=14.959;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.78;MQ0=29;MQRankSum=2.640;QD=5.74;ReadPosRankSum=2.462;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,71:134:99:799,0,475 chrXIII 609710 . G A 811.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.523;DP=132;Dels=0.00;FS=15.234;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.84;MQ0=28;MQRankSum=1.963;QD=6.14;ReadPosRankSum=2.626;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,71:132:99:841,0,477 chrXIII 609723 . G C 998.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.552;DP=148;Dels=0.01;FS=2.467;HaplotypeScore=11.0335;MLEAC=1;MLEAF=0.500;MQ=25.81;MQ0=24;MQRankSum=0.881;QD=6.74;ReadPosRankSum=-0.233;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:55,88:147:99:1028,0,461 chrXIII 609726 . T C 1010.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.523;DP=151;Dels=0.00;FS=1.685;HaplotypeScore=12.2331;MLEAC=1;MLEAF=0.500;MQ=25.88;MQ0=24;MQRankSum=1.047;QD=6.69;ReadPosRankSum=-0.869;SB=-1.460e+02 GT:AD:DP:GQ:PL 0/1:56,95:151:99:1040,0,468 chrXIII 609729 . T C 1086.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.134;DP=164;Dels=0.00;FS=43.214;HaplotypeScore=36.0842;MLEAC=1;MLEAF=0.500;MQ=26.34;MQ0=22;MQRankSum=-0.152;QD=6.62;ReadPosRankSum=1.374;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:66,98:164:99:1116,0,476 chrXIII 609747 . C A 326.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.809;DP=176;Dels=0.00;FS=6.730;HaplotypeScore=112.3269;MLEAC=1;MLEAF=0.500;MQ=28.30;MQ0=6;MQRankSum=0.066;QD=1.85;ReadPosRankSum=4.351;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,28:176:99:356,0,1343 chrXIII 609750 . C T 322.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.971;DP=177;Dels=0.00;FS=28.724;HaplotypeScore=134.2419;MLEAC=1;MLEAF=0.500;MQ=28.42;MQ0=4;MQRankSum=0.923;QD=1.82;ReadPosRankSum=4.974;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:150,27:177:99:352,0,1282 chrXIII 609759 . T C 1552 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.120;DP=176;Dels=0.00;FS=17.704;HaplotypeScore=174.8785;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=7;MQRankSum=-0.236;QD=8.82;ReadPosRankSum=-3.354;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:25,151:176:99:1585,165,0 chrXIII 609770 . A T 289.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.213;DP=193;Dels=0.00;FS=28.720;HaplotypeScore=130.3463;MLEAC=1;MLEAF=0.500;MQ=27.67;MQ0=8;MQRankSum=1.482;QD=1.50;ReadPosRankSum=-1.105;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:171,22:193:99:319,0,1626 chrXIII 609777 . T A 293.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.466;DP=199;Dels=0.00;FS=28.839;HaplotypeScore=112.0072;MLEAC=1;MLEAF=0.500;MQ=27.60;MQ0=8;MQRankSum=0.338;QD=1.47;ReadPosRankSum=-2.847;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:177,22:199:99:323,0,1711 chrXIII 609786 . C T 330.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.389;DP=193;Dels=0.00;FS=167.210;HaplotypeScore=56.0006;MLEAC=1;MLEAF=0.500;MQ=27.49;MQ0=8;MQRankSum=-0.254;QD=1.71;ReadPosRankSum=-1.083;SB=-2.030e+02 GT:AD:DP:GQ:PL 0/1:116,77:193:99:360,0,1545 chrXIII 609795 . T C 320.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.966;DP=185;Dels=0.00;FS=163.973;HaplotypeScore=36.9045;MLEAC=1;MLEAF=0.500;MQ=27.26;MQ0=8;MQRankSum=-2.707;QD=1.73;ReadPosRankSum=-2.678;SB=-2.510e+02 GT:AD:DP:GQ:PL 0/1:101,84:185:99:350,0,1281 chrXIII 609801 . A G,T 1712.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.788;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=105.2489;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.07;MQ0=8;MQRankSum=1.376;QD=9.78;ReadPosRankSum=-0.006;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/2:12,69,84:175:99:1772,1361,1304,411,0,258 chrXIII 609834 . T C 768.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;DP=134;Dels=0.00;FS=88.723;HaplotypeScore=17.4648;MLEAC=1;MLEAF=0.500;MQ=30.95;MQ0=8;MQRankSum=0.367;QD=5.73;ReadPosRankSum=6.808;SB=-8.890e+02 GT:AD:DP:GQ:PL 0/1:54,80:134:99:798,0,517 chrXIII 609840 . C G 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.791;DP=113;Dels=0.00;FS=21.387;HaplotypeScore=10.8249;MLEAC=1;MLEAF=0.500;MQ=34.64;MQ0=8;MQRankSum=0.694;QD=0.43;ReadPosRankSum=-1.845;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,12:113:79:79,0,953 chrXIII 609844 . G A 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.782;DP=116;Dels=0.00;FS=24.230;HaplotypeScore=12.2770;MLEAC=1;MLEAF=0.500;MQ=36.85;MQ0=3;MQRankSum=0.041;QD=0.45;ReadPosRankSum=-2.554;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:98,16:116:82:82,0,1073 chrXIII 609846 . C T 1362.04 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.858;DP=119;Dels=0.00;FS=2.892;HaplotypeScore=11.2804;MLEAC=1;MLEAF=0.500;MQ=36.99;MQ0=3;MQRankSum=0.225;QD=11.45;ReadPosRankSum=-0.320;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:2,105:119:99:1395,144,0 chrXIII 612582 . G A 3452.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.01;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3452,343,0 chrXIII 615554 . T G 3536.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7126;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.44;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3536,364,0 chrXIII 616433 . C G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.72;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3267,334,0 chrXIII 618249 . T G 1377 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;QD=18.36;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1410,147,0 chrXIII 621167 . C A 4325.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.29;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4325,433,0 chrXIII 623042 . T G 4533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.251;DP=192;Dels=0.00;FS=9.143;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.023;QD=23.61;ReadPosRankSum=3.187;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:4,188:192:99:4533,481,0 chrXIII 626059 . G T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.1941;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.49;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4334,427,0 chrXIII 626195 . G A 3403.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.38;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3403,334,0 chrXIII 626430 . A G 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.744;DP=76;Dels=0.00;FS=2.609;HaplotypeScore=4.6348;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.041;QD=22.00;ReadPosRankSum=2.906;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:3,73:76:99:1705,171,0 chrXIII 627654 . G C 6117.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=9.3436;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.71;SB=-3.434e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:6117,631,0 chrXIII 627847 . G A 4481.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.6329;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.97;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4481,451,0 chrXIII 628415 . G A 4861.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.0091;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.19;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4861,475,0 chrXIII 628699 . A G 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.624;QD=21.68;ReadPosRankSum=2.910;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:3,75:78:99:1724,174,0 chrXIII 628821 . C T 361 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=25.79;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:39:394,39,0 chrXIII 628982 . T A 2463 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.93;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2496,264,0 chrXIII 629793 . C T 4525.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.46;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4525,451,0 chrXIII 630246 . T A 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=3.497;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-0.315;QD=20.32;ReadPosRankSum=1.653;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2715,273,0 chrXIII 630249 . G A 2548 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=19.91;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2581,261,0 chrXIII 631964 . T C 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.199;DP=154;Dels=0.00;FS=3.436;HaplotypeScore=7.5589;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.364;QD=25.65;ReadPosRankSum=2.226;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3950,377,0 chrXIII 634784 . C T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3424,334,0 chrXIII 635063 . T C 3026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.131;QD=25.43;ReadPosRankSum=1.703;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3059,315,0 chrXIII 635124 . A G 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=142;Dels=0.00;FS=14.805;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.627;QD=25.40;ReadPosRankSum=3.334;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:4,137:142:99:3607,367,0 chrXIII 635402 . A G 5357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.5242;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.410;QD=25.88;ReadPosRankSum=1.682;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:5357,550,0 chrXIII 635511 . A G 5540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=220;Dels=0.00;FS=5.244;HaplotypeScore=8.8378;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.069;QD=25.18;ReadPosRankSum=2.932;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:3,217:220:99:5540,571,0 chrXIII 636208 . C T 2852 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.1593;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.93;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2885,286,0 chrXIII 636639 . T C 3221.02 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=18.2697;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3254,351,0 chrXIII 637100 . C T 4192.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.0077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4192,412,0 chrXIII 637150 . A G 4593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.3405;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.149;QD=24.56;ReadPosRankSum=1.695;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4593,472,0 chrXIII 637295 . C T 5385.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.7702;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.40;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:5385,526,0 chrXIII 637712 . T C 5133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=210;Dels=0.00;FS=10.681;HaplotypeScore=17.4910;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.475;QD=24.44;ReadPosRankSum=2.377;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,203:210:99:5133,523,0 chrXIII 637889 . T C 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=131;Dels=0.00;FS=3.397;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.685;QD=24.50;ReadPosRankSum=1.625;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:3242,345,0 chrXIII 638009 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3156,319,0 chrXIII 639027 . G A 2444 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2477,243,0 chrXIII 639224 . T C 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.798;QD=24.61;ReadPosRankSum=1.709;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3766,391,0 chrXIII 639437 . A G 4922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=199;Dels=0.00;FS=3.122;HaplotypeScore=8.8315;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.292;QD=24.73;ReadPosRankSum=1.714;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:1,196:199:99:4922,499,0 chrXIII 639623 . T G 4328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=17.3083;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.626;QD=22.42;ReadPosRankSum=1.714;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:4328,468,0 chrXIII 640720 . G C 2569 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.69;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2602,267,0 chrXIII 641090 . A G 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=3.450;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-1.586;QD=21.22;ReadPosRankSum=1.711;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3544,364,0 chrXIII 641091 . A G 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=6.635;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.836;QD=20.98;ReadPosRankSum=2.348;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:2,167:171:99:3587,367,0 chrXIII 641548 . A G 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=3.967;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.383;QD=23.98;ReadPosRankSum=1.672;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4148,438,0 chrXIII 641634 . C A 4730.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.0834;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.89;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4730,463,0 chrXIII 642388 . A T 4091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=3.992;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.798;QD=22.98;ReadPosRankSum=1.674;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4091,406,0 chrXIII 642868 . G A 2974 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3007,295,0 chrXIII 643985 . C T 4946.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.5350;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.44;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4946,487,0 chrXIII 644973 . T G 7407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.721;DP=315;Dels=0.00;FS=3.435;HaplotypeScore=21.3316;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.610;QD=23.51;ReadPosRankSum=1.643;SB=-4.076e+03 GT:AD:DP:GQ:PL 1/1:1,310:315:99:7407,748,0 chrXIII 645420 . A T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=30.9449;MLEAC=2;MLEAF=1.00;MQ=60.38;MQ0=0;QD=25.88;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3623,358,0 chrXIII 645478 . T G 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=149;Dels=0.00;FS=6.007;HaplotypeScore=11.7413;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.390;QD=23.98;ReadPosRankSum=2.898;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:3,144:149:99:3573,367,0 chrXIII 645592 . T C 3957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=169;Dels=0.00;FS=6.151;HaplotypeScore=15.1909;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.768;QD=23.41;ReadPosRankSum=2.420;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3957,403,0 chrXIII 645786 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.45;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3308,328,0 chrXIII 645817 . A G 4102.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.56;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4102,424,0 chrXIII 645859 . G T 4369.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.5353;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.87;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4369,436,0 chrXIII 645900 . A G 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=147;Dels=0.00;FS=5.483;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-1.870;QD=21.12;ReadPosRankSum=2.952;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3137,330,0 chrXIII 645914 . C G 3058 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.54;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3091,318,0 chrXIII 646241 . A G 4016.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.42;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4016,421,0 chrXIII 646298 . G C 4432.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.3501;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.54;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4432,451,0 chrXIII 646699 . G T 2450 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=24.75;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2483,246,0 chrXIII 647474 . A G 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=145;Dels=0.00;FS=2.978;HaplotypeScore=10.4408;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.183;QD=20.30;ReadPosRankSum=2.380;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:2,139:145:99:2976,315,0 chrXIII 648168 . T A 4738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=181;Dels=0.00;FS=8.416;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.387;QD=26.18;ReadPosRankSum=2.368;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4738,469,0 chrXIII 648377 . C T 3008 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3041,298,0 chrXIII 649250 . C T 2119 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=26.16;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2152,210,0 chrXIII 649473 . G A 2640 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.88;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2673,276,0 chrXIII 649808 . A G 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=112;Dels=0.00;FS=2.877;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.168;QD=22.35;ReadPosRankSum=2.360;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:2,108:112:99:2536,264,0 chrXIII 650714 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3145;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.745;QD=24.93;ReadPosRankSum=2.277;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2875,294,0 chrXIII 650971 . A C 4115.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.12;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,181:186:99:4115,435,0 chrXIII 650986 . C T 4654.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=24.49;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4654,460,0 chrXIII 651148 . A G 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.422;QD=25.56;ReadPosRankSum=1.704;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3177,319,0 chrXIII 651277 . A G 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.935;QD=24.66;ReadPosRankSum=1.707;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:3477,358,0 chrXIII 651340 . C T 3203 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=17.2985;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.42;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3236,330,0 chrXIII 651388 . C A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=28.39;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3662,358,0 chrXIII 651497 . C T 3514.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=118.7027;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=24.40;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3514,346,0 chrXIII 651579 . T C 4698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=216;Dels=0.00;FS=6.082;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=1.972;QD=21.75;ReadPosRankSum=2.968;SB=-2.926e+03 GT:AD:DP:GQ:PL 1/1:3,213:216:99:4698,475,0 chrXIII 652003 . A G 1075 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.87;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1108,117,0 chrXIII 652277 . T C 1777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.783;QD=24.01;ReadPosRankSum=1.685;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1810,186,0 chrXIII 652690 . A C 3846.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3846,382,0 chrXIII 654300 . C T 4757.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.0526;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.33;SB=-2.902e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4757,472,0 chrXIII 654902 . T C 512 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=17.07;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,28:30:57:545,57,0 chrXIII 655922 . A G 4117.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.62;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4117,429,0 chrXIII 655948 . G A 3741.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=24.14;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3741,385,0 chrXIII 656131 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=149;Dels=0.00;FS=7.399;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.276;QD=23.41;ReadPosRankSum=2.399;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:3488,349,0 chrXIII 656137 . T C 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.234;QD=21.06;ReadPosRankSum=1.709;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3171,336,0 chrXIII 657020 . T C 4360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=175;Dels=0.00;FS=6.096;HaplotypeScore=14.1449;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-1.720;QD=24.91;ReadPosRankSum=2.422;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4360,442,0 chrXIII 657064 . G A 4770.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=26.21;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4770,472,0 chrXIII 657211 . T C 3753.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.5058;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=26.43;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3753,379,0 chrXIII 657240 . G C 3309.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=9.1371;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.82;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3309,345,0 chrXIII 657241 . C A 3394.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3260;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.78;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,145:149:99:3394,349,0 chrXIII 657406 . G A 3783.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=26.09;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3783,373,0 chrXIII 658665 . T C 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.1539;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=1.044;QD=25.58;ReadPosRankSum=1.665;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3991,412,0 chrXIII 659356 . T C 4116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=3.722;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.866;QD=23.79;ReadPosRankSum=1.672;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4116,415,0 chrXIII 659437 . C T 4738.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.18;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4738,466,0 chrXIII 659982 . A G 4716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.0581;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.753;QD=24.44;ReadPosRankSum=1.714;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:4716,487,0 chrXIII 661308 . G A 5726.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=27.66;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:5726,559,0 chrXIII 661676 . T C 5556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=238;Dels=0.00;FS=8.440;HaplotypeScore=7.8811;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=2.035;QD=23.34;ReadPosRankSum=2.367;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:2,235:238:99:5556,595,0 chrXIII 661764 . G A 5612.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=22.9470;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.19;SB=-2.963e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5612,568,0 chrXIII 663000 . C T 4610.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.75;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4610,472,0 chrXIII 664080 . T C 6539.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=12.9490;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.44;SB=-3.421e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:6539,673,0 chrXIII 664122 . A C 5076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.8882;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.964;QD=23.83;ReadPosRankSum=1.699;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:5076,535,0 chrXIII 664518 . T C 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=147;Dels=0.00;FS=3.040;HaplotypeScore=9.1540;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.059;QD=23.42;ReadPosRankSum=1.709;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3443,357,0 chrXIII 664741 . A G 3403.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.02;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3403,357,0 chrXIII 664811 . A G 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=4.680;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-0.184;QD=19.33;ReadPosRankSum=1.708;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2778,309,0 chrXIII 664814 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.35;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2819,312,0 chrXIII 665727 . C A 2314 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.22;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2347,231,0 chrXIII 665980 . T C 3688.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3688,373,0 chrXIII 666112 . T C 5082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.4207;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.419;QD=24.09;ReadPosRankSum=1.716;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:5082,511,0 chrXIII 668207 . C A 1599 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.27;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1632,162,0 chrXIII 669285 . A C 5271.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5271,538,0 chrXIII 669502 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3103,313,0 chrXIII 669658 . A T 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.043;QD=24.97;ReadPosRankSum=2.364;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:2180,216,0 chrXIII 671518 . T G 2404 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.27;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2437,252,0 chrXIII 672129 . T C 5548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=252;Dels=0.00;FS=8.560;HaplotypeScore=12.8611;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.230;QD=22.02;ReadPosRankSum=2.420;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:2,249:252:99:5548,592,0 chrXIII 674192 . A G 6959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.194;DP=334;Dels=0.00;FS=8.216;HaplotypeScore=31.9245;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.249;QD=20.84;ReadPosRankSum=3.315;SB=-3.468e+03 GT:AD:DP:GQ:PL 1/1:4,328:334:99:6959,739,0 chrXIII 674833 . G A 1787 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.34;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1820,180,0 chrXIII 675083 . A C 2754 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=7.9953;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.50;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2787,294,0 chrXIII 675245 . G C 3982.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3982,406,0 chrXIII 675611 . T C 2857 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.41;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2890,300,0 chrXIII 678117 . T C 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=142;Dels=0.00;FS=2.992;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.009;QD=24.68;ReadPosRankSum=2.397;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3504,361,0 chrXIII 678210 . C T 5483.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.11;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5483,559,0 chrXIII 678565 . G A 4952.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4952,502,0 chrXIII 680018 . A G 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.402;QD=22.52;ReadPosRankSum=1.595;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2871,289,0 chrXIII 680380 . T C 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=112;Dels=0.00;FS=8.857;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.369;QD=24.73;ReadPosRankSum=2.383;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:2,108:112:99:2803,282,0 chrXIII 680399 . A G 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.746;QD=22.64;ReadPosRankSum=1.704;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,122:126:99:2886,294,0 chrXIII 680769 . T C 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.746;QD=25.67;ReadPosRankSum=1.708;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3722,373,0 chrXIII 680903 . C T 4308.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.4278;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=25.80;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4308,433,0 chrXIII 680936 . T C 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.035;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.6935;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.143;QD=21.34;ReadPosRankSum=3.272;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:5,154:160:99:3415,357,0 chrXIII 680940 . C T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.5387;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.08;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,150:158:99:3330,345,0 chrXIII 680954 . C A 3165 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.83;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3198,330,0 chrXIII 681836 . A G 4127.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.2335;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.80;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4127,430,0 chrXIII 681922 . C T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.5313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3288,331,0 chrXIII 682209 . T C 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.7265;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.959;QD=24.78;ReadPosRankSum=1.705;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3254,331,0 chrXIII 682821 . T C 4475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.626;DP=207;Dels=0.00;FS=5.397;HaplotypeScore=20.5837;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.995;QD=21.62;ReadPosRankSum=2.937;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:4475,466,0 chrXIII 682985 . C G 6775.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=16.6130;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.61;SB=-2.998e+03 GT:AD:DP:GQ:PL 1/1:0,284:287:99:6775,703,0 chrXIII 683334 . G A 6344.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.50;SB=-2.962e+03 GT:AD:DP:GQ:PL 1/1:0,280:282:99:6344,652,0 chrXIII 683373 . T C 5799.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=10.5932;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.64;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:5799,610,0 chrXIII 683802 . A G 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=0.454;QD=22.07;ReadPosRankSum=1.711;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3708,379,0 chrXIII 683807 . C T 3503.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=20.37;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3503,366,0 chrXIII 683958 . G A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.5529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.90;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4109,403,0 chrXIII 684197 . T A 5513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-1.510;QD=27.16;ReadPosRankSum=1.664;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:5513,550,0 chrXIII 684262 . C T 4830.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.5222;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.42;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4830,493,0 chrXIII 684406 . A T 3969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=198;Dels=0.00;FS=6.039;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-0.335;QD=20.05;ReadPosRankSum=2.894;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:3969,450,0 chrXIII 684407 . G A 4011.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.89;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4011,447,0 chrXIII 685138 . C T 4759.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4759,481,0 chrXIII 685330 . T A 4012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=4.717;HaplotypeScore=11.4334;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.541;QD=25.08;ReadPosRankSum=1.667;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:4012,403,0 chrXIII 685585 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2609,259,0 chrXIII 685689 . T C 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=82;Dels=0.00;FS=8.912;HaplotypeScore=7.5365;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.632;QD=23.30;ReadPosRankSum=2.357;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:2,78:82:99:1944,201,0 chrXIII 685956 . T C 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.344;QD=26.39;ReadPosRankSum=1.643;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:3094,313,0 chrXIII 686208 . A G 4268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=172;Dels=0.00;FS=7.192;HaplotypeScore=11.4342;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.142;QD=24.81;ReadPosRankSum=2.406;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:4268,436,0 chrXIII 686409 . G A 5092.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.38;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:5092,508,0 chrXIII 686772 . C T 3834.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.81;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3834,376,0 chrXIII 687028 . G T 4654.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=26.90;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4654,460,0 chrXIII 687199 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.74;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3800,373,0 chrXIII 687551 . T C 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-1.585;QD=24.92;ReadPosRankSum=1.703;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2998,312,0 chrXIII 687782 . A G 4343.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.2117;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.98;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4343,454,0 chrXIII 688957 . C T 2945 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2978,298,0 chrXIII 689409 . G A 3150 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.68;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3183,313,0 chrXIII 690710 . A T 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=154;Dels=0.00;FS=2.723;HaplotypeScore=15.3864;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.598;QD=23.45;ReadPosRankSum=2.322;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3611,367,0 chrXIII 691064 . A T 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=5.356;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.150;QD=25.33;ReadPosRankSum=1.705;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3250,328,0 chrXIII 693754 . C T 5043.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=25.60;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:5043,505,0 chrXIII 695197 . A G 5984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=15.9862;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.172;QD=24.73;ReadPosRankSum=1.689;SB=-3.134e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:5984,604,0 chrXIII 695300 . G A 4444.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.97;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4444,445,0 chrXIII 696845 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2996,298,0 chrXIII 697520 . A G 4166.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.8064;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.89;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4166,433,0 chrXIII 697902 . C T 4785.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.58;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4785,478,0 chrXIII 697993 . G A 4712.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.1939;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.33;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4712,484,0 chrXIII 698195 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.5140;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.79;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3508,355,0 chrXIII 698336 . C T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.03;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3270,334,0 chrXIII 698372 . C A 2802 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.76;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2835,277,0 chrXIII 698549 . G T 1781 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=27.83;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1814,180,0 chrXIII 698569 . A G 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.231;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=1.039;QD=24.22;ReadPosRankSum=1.675;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1486,134,0 chrXIII 698595 . G A 1268 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=24.38;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1301,132,0 chrXIII 698611 . A G 1167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=3.543;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.666;QD=22.44;ReadPosRankSum=1.532;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1200,126,0 chrXIII 698642 . T A 966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.945;QD=21.95;ReadPosRankSum=1.654;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:999,105,0 chrXIII 698828 . C T 2731 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=26.77;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2764,276,0 chrXIII 698850 . G C 2545 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.01;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2578,261,0 chrXIII 698988 . C T 3397.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.92;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3397,340,0 chrXIII 699056 . C T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.68;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3381,331,0 chrXIII 699315 . C A 3100 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0792;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.83;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3133,318,0 chrXIII 699415 . T C 3910.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.2649;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.06;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3910,397,0 chrXIII 699619 . T G 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.944;QD=24.70;ReadPosRankSum=1.708;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3581,375,0 chrXIII 699822 . G A 5600.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=26.29;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5600,541,0 chrXIII 699964 . C T 6533.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=26.67;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:6533,640,0 chrXIII 699987 . T C 6707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=10.4924;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-0.537;QD=23.53;ReadPosRankSum=1.671;SB=-3.285e+03 GT:AD:DP:GQ:PL 1/1:1,283:285:99:6707,700,0 chrXIII 700035 . A G 5222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=255;Dels=0.00;FS=7.326;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-0.630;QD=20.48;ReadPosRankSum=2.401;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:2,253:255:99:5222,550,0 chrXIII 700050 . G A 5147.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.19;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5147,511,0 chrXIII 700130 . T C 6263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.401;DP=261;Dels=0.00;FS=9.006;HaplotypeScore=10.6166;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.901;QD=24.00;ReadPosRankSum=3.367;SB=-3.631e+03 GT:AD:DP:GQ:PL 1/1:4,256:261:99:6263,634,0 chrXIII 700452 . T A 4308.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.54;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4308,421,0 chrXIII 700469 . C T 4127.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.72;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4127,403,0 chrXIII 700735 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.263;QD=22.42;ReadPosRankSum=1.688;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,157:162:99:3632,378,0 chrXIII 700956 . A G 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.816;QD=23.81;ReadPosRankSum=1.712;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:4190,439,0 chrXIII 701244 . T C 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=118;Dels=0.00;FS=4.887;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.608;QD=22.25;ReadPosRankSum=1.702;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,113:118:99:2659,273,0 chrXIII 701442 . C T 1791 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.96;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1824,186,0 chrXIII 701468 . A T 1937 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.83;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1970,207,0 chrXIII 704389 . C G 3376.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3376,346,0 chrXIII 704704 . T C 2545 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.95;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2578,261,0 chrXIII 705104 . C T 3862.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.8844;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.82;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3862,382,0 chrXIII 706623 . C T 4218.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.7832;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.39;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4218,418,0 chrXIII 708242 . G A 3672.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3672,367,0 chrXIII 711470 . A T 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=4.649;HaplotypeScore=10.1994;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.673;QD=25.60;ReadPosRankSum=1.653;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4480,442,0 chrXIII 711575 . G A 5464.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=21.0960;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.30;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5464,541,0 chrXIII 711844 . C T 4297.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4297,427,0 chrXIII 712539 . G C 4548.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.8154;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.84;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4548,466,0 chrXIII 712889 . G T 4336.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.36;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4336,421,0 chrXIII 714847 . G A 7132.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=26.41;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:7132,703,0 chrXIII 715098 . A G 4153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=163;Dels=0.00;FS=6.018;HaplotypeScore=13.6744;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-2.080;QD=25.48;ReadPosRankSum=2.945;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:4153,421,0 chrXIII 715145 . A G 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.405;QD=24.57;ReadPosRankSum=1.710;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3809,385,0 chrXIII 715457 . C T 4270.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.73;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4270,418,0 chrXIII 715643 . T C 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.6184;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.718;QD=25.30;ReadPosRankSum=1.711;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4149,421,0 chrXIII 716541 . G T 1397 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1430,144,0 chrXIII 716978 . C T 4688.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=24.29;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4688,463,0 chrXIII 716990 . C T 4577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=197;Dels=0.00;FS=5.567;HaplotypeScore=12.1144;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.636;QD=23.23;ReadPosRankSum=-0.421;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:3,193:197:99:4577,448,0 chrXIII 717074 . C T 5367.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.8748;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=27.38;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5367,535,0 chrXIII 717629 . T C 3977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=167;Dels=0.00;FS=6.933;HaplotypeScore=11.9110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.858;QD=23.81;ReadPosRankSum=2.390;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3977,403,0 chrXIII 718072 . A C 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.341;QD=23.72;ReadPosRankSum=1.706;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:3212,333,0 chrXIII 718189 . A C 2111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=0.826;QD=23.99;ReadPosRankSum=1.498;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:2,86:88:99:2144,225,0 chrXIII 718198 . A G 1811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=2.902;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=-0.368;QD=23.52;ReadPosRankSum=2.386;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1844,186,0 chrXIII 718210 . T C 1699 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=23.93;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1732,186,0 chrXIII 718241 . C T 1696 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.32;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1729,174,0 chrXIII 718396 . A G 1350 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4485;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.77;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1383,144,0 chrXIII 718423 . G A 980 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=21.78;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1013,99,0 chrXIII 718456 . A C 984 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=20.50;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1017,105,0 chrXIII 718505 . A G 1608 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=22.03;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1641,171,0 chrXIII 718511 . T C 1581 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=21.66;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1614,165,0 chrXIII 718535 . T A 1469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=70;Dels=0.00;FS=2.944;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=-0.617;QD=20.99;ReadPosRankSum=2.344;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1502,147,0 chrXIII 718665 . G T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=23.38;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3507,352,0 chrXIII 718679 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.09;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3082,310,0 chrXIII 718763 . T C 4250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.241;DP=177;Dels=0.00;FS=5.234;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.819;QD=24.01;ReadPosRankSum=3.410;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:4,172:177:99:4250,436,0 chrXIII 718938 . T A 5162.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.46;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5162,523,0 chrXIII 718973 . G A 4420.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.6157;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.76;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4420,436,0 chrXIII 719516 . G A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.39;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3568,349,0 chrXIII 719517 . G A 3602.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=19.90;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3602,349,0 chrXIII 724434 . T C 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=195;Dels=0.00;FS=3.033;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.373;QD=23.50;ReadPosRankSum=2.399;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4583,466,0 chrXIII 724990 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.6044;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.974;QD=25.06;ReadPosRankSum=1.678;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3268,334,0 chrXIII 725060 . T C 4941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.7702;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.709;QD=25.34;ReadPosRankSum=1.678;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4941,502,0 chrXIII 727057 . A G 5292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=15.3420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.232;QD=19.97;ReadPosRankSum=2.422;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:2,263:265:99:5292,547,0 chrXIII 727303 . C T 4880.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.8191;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.10;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4880,472,0 chrXIII 727646 . G A 4971.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.49;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4971,484,0 chrXIII 727961 . C T 4880.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4880,490,0 chrXIII 729284 . T C 3304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=138;Dels=0.00;FS=6.519;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.719;QD=23.94;ReadPosRankSum=2.413;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:2,133:138:99:3304,343,0 chrXIII 729976 . A G 3610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=3.041;HaplotypeScore=8.9526;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.078;QD=25.24;ReadPosRankSum=1.684;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3610,364,0 chrXIII 730371 . T A 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=120;Dels=0.00;FS=3.027;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.400;QD=22.43;ReadPosRankSum=2.368;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2725,271,0 chrXIII 730384 . A G 2885 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.2761;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.61;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2918,303,0 chrXIII 730458 . G A 5138.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.0354;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.12;SB=-3.002e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5138,508,0 chrXIII 730533 . T C 4130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.650;QD=24.15;ReadPosRankSum=1.691;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:4130,430,0 chrXIII 732194 . T G 3379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.030;QD=26.61;ReadPosRankSum=2.410;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:2,124:127:99:3379,343,0 chrXIII 733833 . A C 3039 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:3072,315,0 chrXIII 733977 . G A 3869.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.96;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3869,385,0 chrXIII 734142 . C T 2283 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=14.8840;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.20;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2316,234,0 chrXIII 734392 . T C 4236.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.67;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4236,439,0 chrXIII 739012 . T C 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.701;DP=119;Dels=0.00;FS=5.434;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.564;QD=24.44;ReadPosRankSum=2.941;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2941,301,0 chrXIII 740218 . G T 2621 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.70;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2654,262,0 chrXIII 742893 . G A 5702.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.92;SB=-3.142e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5702,565,0 chrXIII 743500 . C A 4655.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.6755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.24;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4655,475,0 chrXIII 744435 . T A 3902.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.5930;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3902,411,0 chrXIII 747051 . T C 3672.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.09;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3672,384,0 chrXIII 747879 . A C 1807 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.45;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1840,189,0 chrXIII 747973 . G A 1278 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1311,132,0 chrXIII 750187 . G C 4054.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.0690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4054,432,0 chrXIII 751399 . G C 5032.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.5462;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.67;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:5032,523,0 chrXIII 752227 . T G 4113.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.24;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4113,430,0 chrXIII 754594 . T C 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.5527;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.642;QD=23.53;ReadPosRankSum=0.919;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2762,282,0 chrXIII 754796 . A T 3569.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=27.04;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3569,352,0 chrXIII 754826 . T A 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.201;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.0578;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-1.510;QD=24.08;ReadPosRankSum=1.497;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3853,368,0 chrXIII 755756 . G A 5112.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.89;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:5112,511,0 chrXIII 755780 . T C 4890.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.96;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:4890,502,0 chrXIII 755942 . T C 4654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.637;DP=192;Dels=0.00;FS=7.997;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.093;QD=24.24;ReadPosRankSum=3.792;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:5,187:192:99:4654,478,0 chrXIII 756198 . A T 4351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.151;QD=25.15;ReadPosRankSum=1.712;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4351,427,0 chrXIII 756230 . C T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.96;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3444,343,0 chrXIII 757200 . T C 4761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.847;QD=26.45;ReadPosRankSum=1.655;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4761,487,0 chrXIII 757281 . T C 7603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.121;DP=293;Dels=0.00;FS=9.030;HaplotypeScore=26.5183;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.066;QD=25.95;ReadPosRankSum=5.182;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:10,283:293:99:7603,784,0 chrXIII 757815 . G C 7867.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=11.0014;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.74;SB=-3.848e+03 GT:AD:DP:GQ:PL 1/1:0,342:346:99:7867,790,0 chrXIII 757834 . A G 7215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.663;DP=352;Dels=0.00;FS=7.872;HaplotypeScore=11.1653;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=1.833;QD=20.50;ReadPosRankSum=3.815;SB=-3.462e+03 GT:AD:DP:GQ:PL 1/1:6,344:352:99:7215,760,0 chrXIII 758570 . G C 4216.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.87;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4216,436,0 chrXIII 758716 . G T 5836.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=18.2805;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.22;SB=-3.119e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5836,580,0 chrXIII 759082 . A G 5305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.346;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=17.7830;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.039;QD=18.17;ReadPosRankSum=0.705;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:1,289:292:99:5305,537,0 chrXIII 761318 . T A 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.4402;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.492;QD=21.55;ReadPosRankSum=1.592;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3222,331,0 chrXIII 761608 . A C 4477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=178;Dels=0.00;FS=3.000;HaplotypeScore=10.2933;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.518;QD=25.15;ReadPosRankSum=2.353;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4477,445,0 chrXIII 761771 . C T 3133 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.70;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3166,310,0 chrXIII 762321 . C T 3159 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3192,316,0 chrXIII 763743 . A G 1905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=86;Dels=0.00;FS=3.121;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.014;QD=22.15;ReadPosRankSum=0.101;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:2,83:86:99:1938,198,0 chrXIII 764686 . C T 4562.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.07;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4562,454,0 chrXIII 764912 . G T 5381.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.2376;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.31;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5381,532,0 chrXIII 765091 . T C 3913.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.8156;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.29;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3913,397,0 chrXIII 765121 . T C 3658.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.86;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3658,379,0 chrXIII 765682 . T C 4913.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4913,499,0 chrXIII 766039 . T C 2703 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2736,274,0 chrXIII 766621 . T G 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=144;Dels=0.00;FS=11.218;HaplotypeScore=8.0948;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.917;QD=21.44;ReadPosRankSum=3.099;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:5,139:144:99:3120,303,0 chrXIII 767798 . T C 2407 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.31;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2440,255,0 chrXIII 768019 . A G 2496 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=24.00;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2529,261,0 chrXIII 768108 . T A 1493 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=15.72;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1526,156,0 chrXIII 769127 . G C 4801.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=17.0491;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=25.54;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4801,496,0 chrXIII 769653 . A T 4410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=3.245;HaplotypeScore=13.7082;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.875;QD=23.09;ReadPosRankSum=1.641;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4410,439,0 chrXIII 770320 . T C 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=3.500;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.393;QD=24.49;ReadPosRankSum=1.709;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3698,379,0 chrXIII 770362 . A C 3660.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.24;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3660,373,0 chrXIII 772345 . G A 4352.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.8249;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.18;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4352,433,0 chrXIII 772660 . T G 310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.774;DP=64;Dels=0.00;FS=1.405;HaplotypeScore=33.3771;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;MQRankSum=1.355;QD=4.84;ReadPosRankSum=-0.435;SB=-3.722e+02 GT:AD:DP:GQ:PL 1/1:18,45:64:39:343,39,0 chrXIII 772718 . A G 1558 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.91;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1591,162,0 chrXIII 773437 . G A 5474.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.9517;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.46;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5474,547,0 chrXIII 775628 . A T 7792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=286;Dels=0.00;FS=3.995;HaplotypeScore=7.9465;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.787;QD=27.24;ReadPosRankSum=1.720;SB=-3.278e+03 GT:AD:DP:GQ:PL 1/1:1,285:286:99:7792,775,0 chrXIII 777226 . C G 4733.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.18;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4733,487,0 chrXIII 777456 . A G 5285.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.78;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5285,538,0 chrXIII 779689 . C A 3169 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.35;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3202,313,0 chrXIII 780034 . T A 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=130;Dels=0.00;FS=3.658;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.320;QD=22.38;ReadPosRankSum=1.705;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2943,300,0 chrXIII 781016 . C G 4186.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.0225;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.49;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4186,427,0 chrXIII 784941 . T C 3221.92 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3255,339,0 chrXIII 785591 . G A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3299,331,0 chrXIII 788656 . T C 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=3.263;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.163;QD=25.06;ReadPosRankSum=1.667;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2689,279,0 chrXIII 788971 . A G 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=107;Dels=0.00;FS=2.753;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.128;QD=23.11;ReadPosRankSum=2.403;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2506,258,0 chrXIII 789071 . G T 1307 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.93;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1340,141,0 chrXIII 789101 . G A 870 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:90:903,90,0 chrXIII 789267 . G T 273 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.75;SB=-1.179e+02 GT:AD:DP:GQ:PL 1/1:0,11:12:30:306,30,0 chrXIII 789347 . G A 1295 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1328,132,0 chrXIII 789456 . G A 2115 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=25.79;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2148,216,0 chrXIII 789474 . A G 1831 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.06;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1864,189,0 chrXIII 796580 . C T 3525.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.92;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3525,355,0 chrXIII 798041 . T C 4013.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.8427;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.67;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4013,418,0 chrXIII 802812 . G C 4295.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.86;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,176:180:99:4295,454,0 chrXIII 802989 . T C 4222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=3.657;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.142;QD=22.46;ReadPosRankSum=1.695;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4222,442,0 chrXIII 806118 . A G 4662.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.43;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4662,487,0 chrXIII 809198 . A G 4259.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=3.299;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.550;QD=24.76;ReadPosRankSum=1.712;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4259,439,0 chrXIII 817301 . C A 4150.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=26.43;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:4150,415,0 chrXIII 819018 . C T 7419.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=23.9824;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.73;SB=-3.608e+03 GT:AD:DP:GQ:PL 1/1:0,296:300:99:7419,730,0 chrXIII 819141 . A C 6756.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=15.1489;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.05;SB=-4.119e+03 GT:AD:DP:GQ:PL 1/1:0,320:321:99:6756,694,0 chrXIII 819594 . C G 7132.01 filter AC=2;AF=1.00;AN=2;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=10.8394;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.49;SB=-3.715e+03 GT:AD:DP:GQ:PL 1/1:0,361:366:99:7132,769,0 chrXIII 819602 . G A 7363.01 PASS AC=2;AF=1.00;AN=2;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=16.1035;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.04;SB=-3.948e+03 GT:AD:DP:GQ:PL 1/1:0,350:350:99:7363,727,0 chrXIII 819989 . C T 3542.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.8882;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3542,352,0 chrXIII 820241 . C T 5926.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-3.085e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5926,592,0 chrXIII 821038 . G A 5253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=15.6619;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.671;QD=25.01;ReadPosRankSum=0.936;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:5253,535,0 chrXIII 821488 . G T 4068.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.6921;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.11;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4068,415,0 chrXIII 821680 . C G 3718.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.62;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3718,385,0 chrXIII 822465 . G T 3914.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.16;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,163:169:99:3914,382,0 chrXIII 823029 . A G 3644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=146;Dels=0.00;FS=4.085;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.519;QD=24.96;ReadPosRankSum=1.661;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3644,370,0 chrXIII 823336 . A G 4448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=0.431;QD=22.46;ReadPosRankSum=1.644;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4448,457,0 chrXIII 824795 . C A 3728.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.90;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3728,390,0 chrXIII 824813 . A G 3696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=4.886;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.450;QD=23.69;ReadPosRankSum=1.710;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3696,390,0 chrXIII 825605 . T C 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=134;Dels=0.00;FS=8.795;HaplotypeScore=8.8142;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.367;QD=23.61;ReadPosRankSum=2.340;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3197,339,0 chrXIII 826533 . A G 3703.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3703,379,0 chrXIII 826657 . C A 3926.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.3117;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.33;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3926,388,0 chrXIII 826818 . T G 2957 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.2159;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=23.85;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2990,312,0 chrXIII 826968 . T C 3586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=153;Dels=0.00;FS=6.107;HaplotypeScore=21.9077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.302;QD=23.44;ReadPosRankSum=2.926;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:3,147:153:99:3586,373,0 chrXIII 827669 . G A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.6411;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.29;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3401,343,0 chrXIII 828055 . T C 4388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.031;DP=190;Dels=0.00;FS=14.755;HaplotypeScore=15.9319;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.384;QD=23.09;ReadPosRankSum=4.099;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:6,183:190:99:4388,451,0 chrXIII 829049 . G A 4082.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4082,400,0 chrXIII 830235 . T C 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=88;Dels=0.00;FS=3.112;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=0.403;QD=22.77;ReadPosRankSum=1.692;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,85:88:99:2037,210,0 chrXIII 830265 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7306;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.02;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1905,195,0 chrXIII 830275 . C A 1832 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.34;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1865,186,0 chrXIII 830543 . T C 4444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.330;QD=25.39;ReadPosRankSum=1.712;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:4444,451,0 chrXIII 830562 . C T 4530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=179;Dels=0.00;FS=4.333;HaplotypeScore=2.7021;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-1.732;QD=25.31;ReadPosRankSum=1.558;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4530,442,0 chrXIII 830589 . G A 4155.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.61;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4155,415,0 chrXIII 830715 . C T 3947.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.9028;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.55;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3947,406,0 chrXIII 831458 . T C 1977 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.03;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2010,207,0 chrXIII 831576 . T C 2118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.095;QD=23.27;ReadPosRankSum=1.656;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2151,216,0 chrXIII 832164 . A T 3671.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5062;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.47;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3671,373,0 chrXIII 832299 . G A 4307.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.7289;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.95;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4307,424,0 chrXIII 838567 . C T 4658.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4658,451,0 chrXIII 839154 . C T 3473.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.51;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3473,352,0 chrXIII 841519 . T G 4507.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8467;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4507,466,0 chrXIII 843285 . A G 3956.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=22.10;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3956,403,0 chrXIII 843287 . T C 3859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=180;Dels=0.00;FS=3.021;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;MQRankSum=-1.644;QD=21.44;ReadPosRankSum=2.368;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3859,391,0 chrXIII 843320 . T C 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=206;Dels=0.00;FS=3.340;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;MQRankSum=-0.465;QD=19.48;ReadPosRankSum=1.664;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4013,415,0 chrXIII 843329 . T A 3808.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=18.67;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3808,385,0 chrXIII 843332 . C T 3869.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=19.54;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3869,388,0 chrXIII 843360 . G A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=19.69;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3445,349,0 chrXIII 843513 . G A 4805.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=24.90;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4805,475,0 chrXIII 843581 . A G 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=3.808;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=1.616;QD=20.04;ReadPosRankSum=1.709;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3019,304,0 chrXIII 843585 . A G 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.917;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=0.954;QD=20.66;ReadPosRankSum=1.707;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2926,306,0 chrXIII 843714 . G A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3883,391,0 chrXIII 844047 . C T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=27.10;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3794,373,0 chrXIII 844074 . G A 4384.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.5326;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=27.92;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4384,433,0 chrXIII 844487 . A G 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=134;Dels=0.00;FS=5.006;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.263;QD=26.26;ReadPosRankSum=1.706;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3519,358,0 chrXIII 844571 . T C 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=146;Dels=0.00;FS=2.781;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.396;QD=26.45;ReadPosRankSum=2.416;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3861,391,0 chrXIII 844681 . T C 5580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=218;Dels=0.00;FS=2.985;HaplotypeScore=12.0344;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.155;QD=25.60;ReadPosRankSum=2.369;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:2,212:217:99:5580,583,0 chrXIII 844923 . T A 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.443;DP=144;Dels=0.00;FS=4.863;HaplotypeScore=12.3575;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.000;QD=22.72;ReadPosRankSum=1.684;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3271,331,0 chrXIII 845058 . A G 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=155;Dels=0.00;FS=3.882;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.562;QD=24.74;ReadPosRankSum=1.687;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3834,397,0 chrXIII 845148 . C T 5310.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.8709;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=27.23;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:5310,523,0 chrXIII 845279 . A G 5399.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.9237;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.58;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5399,550,0 chrXIII 845325 . T C 4651.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.69;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4651,487,0 chrXIII 845352 . T C 4708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.312;DP=213;Dels=0.00;FS=20.822;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.827;QD=22.10;ReadPosRankSum=3.304;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:4,208:213:99:4708,458,0 chrXIII 845605 . A G 4253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=170;Dels=0.00;FS=7.140;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.311;QD=25.02;ReadPosRankSum=2.421;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4253,436,0 chrXIII 845646 . C T 4185.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.6577;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.91;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4185,415,0 chrXIII 845686 . G A 4388.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4388,436,0 chrXIII 846009 . G A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.4608;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.94;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4489,445,0 chrXIII 846119 . T C 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=3.072;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.244;QD=26.45;ReadPosRankSum=1.708;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3783,382,0 chrXIII 846178 . G A 4435.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=26.09;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4435,442,0 chrXIII 846242 . C T 4076.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.4627;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.98;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4076,412,0 chrXIII 846261 . C A 3966.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.04;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3966,397,0 chrXIII 846356 . C T 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.1460;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-1.035;QD=21.66;ReadPosRankSum=1.693;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3878,388,0 chrXIII 846359 . G A 3643.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.3476;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.70;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3643,355,0 chrXIII 846405 . C T 3412.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=16.5336;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.28;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3412,340,0 chrXIII 846746 . T C 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=164;Dels=0.00;FS=4.461;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.599;QD=21.23;ReadPosRankSum=1.711;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3482,363,0 chrXIII 847205 . A G 3983.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3983,417,0 chrXIII 848213 . G A 4772.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.30;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4772,490,0 chrXIII 848515 . A C 2558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.0542;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.044;QD=21.32;ReadPosRankSum=1.674;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2591,264,0 chrXIII 848560 . G A 3122 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=19.1582;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.58;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3155,319,0 chrXIII 848759 . C T 4320.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=26.34;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4320,433,0 chrXIII 848921 . G A 4888.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.7217;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.56;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4888,481,0 chrXIII 849052 . A T 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.110;QD=24.71;ReadPosRankSum=1.665;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3854,385,0 chrXIII 849171 . T G 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=161;Dels=0.00;FS=6.442;HaplotypeScore=13.7900;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.981;QD=24.96;ReadPosRankSum=2.419;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:4018,418,0 chrXIII 849201 . A T 4295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=165;Dels=0.00;FS=7.360;HaplotypeScore=15.4373;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.439;QD=26.03;ReadPosRankSum=2.360;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:4295,430,0 chrXIII 849252 . G A 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.9929;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.251;QD=25.68;ReadPosRankSum=-1.144;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:4134,389,0 chrXIII 849836 . A G 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=157;Dels=0.00;FS=2.691;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.806;QD=21.91;ReadPosRankSum=2.340;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3440,349,0 chrXIII 849902 . C A 4395.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.96;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4395,430,0 chrXIII 850191 . C T 4024.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.79;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:4024,394,0 chrXIII 850515 . G A 2863 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2896,286,0 chrXIII 851620 . T A 1384 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.97;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1417,144,0 chrXIII 851744 . A G 392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.300;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=27.9585;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;MQRankSum=2.662;QD=10.05;ReadPosRankSum=1.821;SB=-8.596e+01 GT:AD:DP:GQ:PL 1/1:7,32:39:48:425,48,0 chrXIII 851822 . T C 1749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-1.977;QD=23.64;ReadPosRankSum=2.349;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1782,180,0 chrXIII 851845 . G A 1459 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=23.16;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1492,147,0 chrXIII 851869 . C T 1204 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=21.50;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1237,123,0 chrXIII 851894 . A G 1176 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=16.80;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1209,123,0 chrXIII 851914 . A G 1581 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=19.76;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1614,162,0 chrXIII 852052 . T C 3351.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=27.02;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3351,346,0 chrXIII 852220 . T C 2517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=4.307;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=1.257;QD=20.30;ReadPosRankSum=1.704;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2550,258,0 chrXIII 852243 . G A 2697 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=113.4772;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=21.75;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2730,265,0 chrXIII 852890 . C T 5825.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-3.276e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5825,574,0 chrXIII 858420 . C A 5171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.5894;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.401;QD=27.22;ReadPosRankSum=0.474;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:1,189:190:99:5171,529,0 chrXIII 858792 . T C 5759.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.49;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,264:268:99:5759,607,0 chrXIII 858913 . A C 4846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=19.0980;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.255;QD=20.53;ReadPosRankSum=0.996;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:3,233:236:99:4846,457,0 chrXIII 858941 . G T 5645.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.95;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5645,550,0 chrXIII 859063 . A G 350 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=15.91;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:39:383,39,0 chrXIII 859067 . A G 350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=24;Dels=0.00;FS=3.074;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=0.470;QD=14.58;ReadPosRankSum=2.246;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:2,22:24:39:383,39,0 chrXIII 859155 . T G 523 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.74;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:57:556,57,0 chrXIII 859329 . A G 2064 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.19;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2097,225,0 chrXIII 859500 . C T 6518.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=13.3684;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.66;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6518,646,0 chrXIII 859746 . A G 9442.01 filter AC=2;AF=1.00;AN=2;DP=391;Dels=0.00;FS=0.000;HaplotypeScore=33.3397;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.15;SB=-5.207e+03 GT:AD:DP:GQ:PL 1/1:0,389:391:99:9442,976,0 chrXIII 859824 . G A 6042.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=29.2390;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.54;SB=-3.378e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6042,607,0 chrXIII 859977 . C T 6338.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=17.5008;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.56;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:0,266:269:99:6338,622,0 chrXIII 860181 . C T 7224.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.80;SB=-3.236e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:7224,706,0 chrXIII 861460 . A G 3026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=188;Dels=0.00;FS=4.062;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=0;MQRankSum=-1.322;QD=16.10;ReadPosRankSum=1.713;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:3059,318,0 chrXIII 861462 . G A 3039 SnpCluster AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.5788;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=0;QD=16.52;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3072,315,0 chrXIII 861471 . T C 1424 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=179;Dels=0.00;FS=5.581;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=34.93;MQ0=0;MQRankSum=-2.441;QD=7.96;ReadPosRankSum=2.610;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:3,175:179:99:1457,177,0 chrXIII 861472 . T G 1388 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.363;DP=180;Dels=0.00;FS=8.210;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=0;MQRankSum=-2.654;QD=7.71;ReadPosRankSum=3.149;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:4,176:180:99:1421,177,0 chrXIII 861474 . C T 1417 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=190;Dels=0.00;FS=5.588;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=36.85;MQ0=0;MQRankSum=-2.646;QD=7.46;ReadPosRankSum=2.328;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:3,187:190:99:1450,180,0 chrXIII 861480 . C T 2610 SnpCluster AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=36.06;MQ0=0;QD=13.66;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:2643,270,0 chrXIII 861520 . T C 3331.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;QD=18.10;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3331,343,0 chrXIII 861780 . C A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=25.82;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3822,376,0 chrXIII 862051 . G A 3644.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=21.19;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3644,367,0 chrXIII 862056 . C A 3346.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=18.80;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3346,345,0 chrXIII 862065 . T C 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.963;DP=191;Dels=0.00;FS=6.046;HaplotypeScore=2.7568;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;MQRankSum=-1.711;QD=19.30;ReadPosRankSum=2.932;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:3686,370,0 chrXIII 862092 . T C 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=183;Dels=0.00;FS=3.034;HaplotypeScore=10.6044;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=-0.425;QD=17.45;ReadPosRankSum=2.369;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:3226,336,0 chrXIII 862215 . C T 3846.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.1421;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=22.36;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3846,397,0 chrXIII 862224 . C T 3841.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.8526;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=24.01;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3841,385,0 chrXIII 862695 . C T 5741.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=21.2993;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.43;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5741,565,0 chrXIII 863526 . G A 4825.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.2934;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.20;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4825,487,0 chrXIII 865402 . A G 685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-1.208;QD=18.51;ReadPosRankSum=1.628;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:2,34:37:75:718,75,0 chrXIII 866108 . T C 5848.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=20.0793;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.68;SB=-3.074e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5848,577,0 chrXIII 866213 . A G 4679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.269;DP=203;Dels=0.00;FS=9.083;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.586;QD=23.05;ReadPosRankSum=3.365;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:4,197:203:99:4679,475,0 chrXIII 866396 . C T 5076.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.16;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:5076,502,0 chrXIII 866753 . T C 5243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.0614;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.119;QD=22.41;ReadPosRankSum=1.702;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:1,232:234:99:5243,544,0 chrXIII 868389 . T C 3874.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.66;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3874,397,0 chrXIII 868542 . G A 2769 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.70;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2802,291,0 chrXIII 868833 . T C 4364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=2.831;HaplotypeScore=9.8028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.010;QD=25.82;ReadPosRankSum=2.348;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:4364,457,0 chrXIII 869058 . C T 4172.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.98;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4172,424,0 chrXIII 869184 . G A 5011.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.57;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5011,505,0 chrXIII 869273 . T C 4049.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=28.12;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:4049,406,0 chrXIII 869428 . A G 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-0.240;QD=19.58;ReadPosRankSum=1.707;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2735,279,0 chrXIII 869433 . C T 2786 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.19;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2819,280,0 chrXIII 869543 . C T 3950.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=16.5911;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.16;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3950,391,0 chrXIII 869738 . T G 4450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=180;Dels=0.00;FS=2.991;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.034;QD=24.72;ReadPosRankSum=2.422;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4450,454,0 chrXIII 869910 . A G 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.375;QD=24.44;ReadPosRankSum=1.638;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3641,373,0 chrXIII 870074 . C T 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.540;DP=122;Dels=0.00;FS=3.540;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.199;QD=24.52;ReadPosRankSum=0.114;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3025,287,0 chrXIII 870328 . C T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.1673;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.35;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3726,373,0 chrXIII 870475 . C T 3093 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3126,321,0 chrXIII 871560 . G C 3864.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3864,405,0 chrXIII 872674 . G A 5423.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.46;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5423,535,0 chrXIII 872837 . T C 3630.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.3068;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.38;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3630,376,0 chrXIII 873222 . G A 4776.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.5108;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.12;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4776,469,0 chrXIII 873817 . G A 6263.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=9.4633;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=26.10;SB=-3.479e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:6263,628,0 chrXIII 873861 . T G 4846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=216;Dels=0.00;FS=3.307;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=2;MQRankSum=1.569;QD=22.44;ReadPosRankSum=1.650;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4846,508,0 chrXIII 873882 . G A 3927.01 SnpCluster AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=2;QD=19.83;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3927,403,0 chrXIII 873884 . T C 3884.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=195;Dels=0.00;FS=8.016;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=2;MQRankSum=-1.393;QD=19.92;ReadPosRankSum=2.348;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:3884,403,0 chrXIII 873888 . C G 3708.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=4;QD=19.72;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3708,376,0 chrXIII 874157 . A G 132.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=99;Dels=0.00;FS=39.120;HaplotypeScore=5.7316;MLEAC=2;MLEAF=1.00;MQ=16.19;MQ0=27;MQRankSum=-3.085;QD=1.33;ReadPosRankSum=3.282;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,95:99:18:165,18,0 chrXIII 874266 . G A 169.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.09;MQ0=0;QD=3.76;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,45:45:21:202,21,0 chrXIII 874272 . C T 203.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=4.14;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,49:49:24:236,24,0 chrXIII 874275 . A G 162.03 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.89;MQ0=0;QD=3.06;SB=-6.004e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:24:195,24,0 chrXIII 874277 . G A 159.03 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.46;MQ0=0;QD=2.74;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:24:192,24,0 chrXIII 874278 . C T 162.03 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.73;MQ0=0;QD=2.75;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:24:195,24,0 chrXIII 874287 . G A 457 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=0;QD=5.51;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:51:490,51,0 chrXIII 874296 . T C 664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=107;Dels=0.00;FS=6.144;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=29.71;MQ0=0;MQRankSum=-1.783;QD=6.21;ReadPosRankSum=2.381;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:72:697,72,0 chrXIII 874942 . T A 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.0994;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.319;QD=25.02;ReadPosRankSum=1.704;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3160,310,0 chrXIII 876530 . G A 5335.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.3194;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.68;SB=-2.881e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:5335,520,0 chrXIII 876747 . C T 4402.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.1250;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.46;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4402,445,0 chrXIII 877786 . A T 2800 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.93;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2833,283,0 chrXIII 878991 . T C 1682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.595;QD=25.10;ReadPosRankSum=1.681;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1715,180,0 chrXIII 879141 . A G 3491.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3491,381,0 chrXIII 879414 . A G 5268.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.9678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.34;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5268,550,0 chrXIII 880104 . G A 6560.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=14.3444;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.12;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:6560,661,0 chrXIII 880179 . T A 6475.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=14.0213;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=25.39;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:6475,646,0 chrXIII 880236 . G T 4204.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.8835;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=23.75;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:4204,424,0 chrXIII 880244 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=23.22;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3762,390,0 chrXIII 880373 . C T 3048 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.83;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:3081,307,0 chrXIII 880430 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=26.51;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3685,358,0 chrXIII 880820 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.06;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3561,358,0 chrXIII 880903 . C T 4643.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.23;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4643,460,0 chrXIII 881269 . G C 3185 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.75;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:3218,328,0 chrXIII 881283 . T A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9394;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.11;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3262,336,0 chrXIII 881617 . T C 4766.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.48;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4766,484,0 chrXIII 881716 . G A 4245.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.7721;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.98;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4245,436,0 chrXIII 882115 . G A 2977 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.73;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3010,301,0 chrXIII 882391 . G A 4201.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.35;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4201,424,0 chrXIII 882406 . C T 4211.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.05;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4211,421,0 chrXIII 882454 . G C 4099.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.5010;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.02;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4099,430,0 chrXIII 882943 . T C 4547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.9145;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.215;QD=24.58;ReadPosRankSum=1.713;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4547,460,0 chrXIII 883123 . A G 4569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=188;Dels=0.00;FS=5.995;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.973;QD=24.30;ReadPosRankSum=2.963;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:4569,466,0 chrXIII 883144 . T C 4715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=3.124;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-1.499;QD=24.43;ReadPosRankSum=1.678;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4715,478,0 chrXIII 883461 . C G 4391.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.1118;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.26;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4391,451,0 chrXIII 883606 . T C 4398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=175;Dels=0.00;FS=3.035;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.455;QD=25.13;ReadPosRankSum=1.673;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4398,454,0 chrXIII 883726 . C T 5965.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.06;SB=-3.294e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5965,595,0 chrXIII 884046 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3347,337,0 chrXIII 885067 . C T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3598,361,0 chrXIII 885211 . T C 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.7910;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.240;QD=23.71;ReadPosRankSum=1.711;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3865,403,0 chrXIII 885661 . C T 4590.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.08;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4590,481,0 chrXIII 885848 . G A 5918.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=11.7679;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.87;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5918,580,0 chrXIII 886590 . T C 82.26 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=138.2357;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=0.53;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:15:115,15,0 chrXIII 886728 . G T 2788 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=24.89;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2821,279,0 chrXIII 886836 . A T 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.663;QD=22.79;ReadPosRankSum=1.604;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1879,183,0 chrXIII 886989 . G T 3758.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=20.8844;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;QD=27.63;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3758,373,0 chrXIII 887158 . G A 4311.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=23.56;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4311,421,0 chrXIII 887633 . A G 4409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.6023;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.751;QD=24.49;ReadPosRankSum=1.713;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4409,451,0 chrXIII 888010 . A C 5589.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=21.66;SB=-3.104e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5589,568,0 chrXIII 888020 . A T 5788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=272;Dels=0.00;FS=3.854;HaplotypeScore=2.6175;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-1.579;QD=21.28;ReadPosRankSum=1.719;SB=-3.408e+03 GT:AD:DP:GQ:PL 1/1:1,271:272:99:5788,571,0 chrXIII 888021 . G C 5629.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=20.54;SB=-3.336e+03 GT:AD:DP:GQ:PL 1/1:0,272:274:99:5629,580,0 chrXIII 888298 . T C 6288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=265;Dels=0.00;FS=3.026;HaplotypeScore=22.0722;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=0.266;QD=23.73;ReadPosRankSum=2.384;SB=-3.475e+03 GT:AD:DP:GQ:PL 1/1:2,261:265:99:6288,646,0 chrXIII 888449 . T C 5677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=257;Dels=0.00;FS=8.019;HaplotypeScore=20.4054;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.635;QD=22.09;ReadPosRankSum=2.411;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:2,254:257:99:5677,583,0 chrXIII 888463 . T C 4921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=235;Dels=0.00;FS=3.942;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-1.256;QD=20.94;ReadPosRankSum=1.687;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:1,232:235:99:4921,517,0 chrXIII 888637 . C T 2717 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.2371;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.28;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2750,285,0 chrXIII 888860 . A C 1620 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1653,168,0 chrXIII 888990 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.83;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:3262,322,0 chrXIII 889053 . C T 3911.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=28.76;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3911,382,0 chrXIII 889102 . C T 4183.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.20;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4183,424,0 chrXIII 889183 . A G 4570.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.70;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4570,469,0 chrXIII 889638 . G A 4358.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.35;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,175:179:99:4358,427,0 chrXIII 890311 . G A 5618.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=20.2727;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=25.65;SB=-2.819e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5618,565,0 chrXIII 890524 . A G 4058.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.74;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4058,424,0 chrXIII 890590 . C T 3302.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.02;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3302,328,0 chrXIII 890947 . C T 4566.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=18.9599;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.55;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4566,457,0 chrXIII 892255 . T C 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=4.771;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.664;QD=23.59;ReadPosRankSum=1.664;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2486,252,0 chrXIII 892535 . T C 1020 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=17.89;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1053,111,0 chrXIII 892536 . G A 1086 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=19.39;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1119,114,0 chrXIII 892597 . T C 723 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=17.21;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:756,81,0 chrXIII 892643 . T C 788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.8717;MLEAC=2;MLEAF=1.00;MQ=61.23;MQ0=0;MQRankSum=1.436;QD=22.51;ReadPosRankSum=1.436;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:84:821,84,0 chrXIII 894039 . A T 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=3.274;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.102;QD=25.01;ReadPosRankSum=1.681;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3401,340,0 chrXIII 896227 . A G 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=166;Dels=0.00;FS=8.406;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.407;QD=24.90;ReadPosRankSum=2.330;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:4133,427,0 chrXIII 897605 . A G 4781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.260;QD=22.45;ReadPosRankSum=1.634;SB=-2.918e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4781,499,0 chrXIII 897816 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=5.653;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.331;QD=23.74;ReadPosRankSum=1.707;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:1,135:139:99:3300,340,0 chrXIII 898024 . T C 2105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.331;QD=23.65;ReadPosRankSum=1.654;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2138,222,0 chrXIII 898408 . G A 5970.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.77;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5970,580,0 chrXIII 899812 . A G 3093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=3.859;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.475;QD=24.55;ReadPosRankSum=1.704;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:3126,327,0 chrXIII 900561 . C T 4165.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.87;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4165,415,0 chrXIII 901428 . A T 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-1.554;QD=22.72;ReadPosRankSum=1.696;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2260,219,0 chrXIII 901535 . A T 2621 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.70;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2654,264,0 chrXIII 901630 . G A 4293.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.5730;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=27.17;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4293,421,0 chrXIII 903826 . T C 2341 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.28;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2374,246,0 chrXIII 904006 . C T 2808 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1898;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=26.49;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2841,280,0 chrXIII 904067 . G C 1971 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=17.76;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,107:111:99:2004,210,0 chrXIII 904069 . A C 2048 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.62;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2081,207,0 chrXIII 904131 . G A 3019 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.6099;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.26;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3052,318,0 chrXIII 904245 . C T 4122.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=21.14;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4122,418,0 chrXIII 904263 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=1.343;QD=20.22;ReadPosRankSum=-0.725;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3964,397,0 chrXIII 904291 . C T 5092.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.9885;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=23.04;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5092,502,0 chrXIII 904370 . C T 8443.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=9.8180;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=26.72;SB=-3.114e+03 GT:AD:DP:GQ:PL 1/1:0,315:315:99:8443,845,0 chrXIII 904506 . T C 6407.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=16.3615;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.38;SB=-3.280e+03 GT:AD:DP:GQ:PL 1/1:0,273:274:99:6407,658,0 chrXIII 904635 . C T 5153.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.60;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5153,529,0 chrXIII 904791 . C T 3148 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3181,316,0 chrXIII 904920 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.07;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2608,261,0 chrXIII 905085 . C T 2847 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.12;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2880,283,0 chrXIII 905531 . T C 4477.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4477,451,0 chrXIII 905868 . G T 4157.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=25.98;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4157,409,0 chrXIII 905893 . A T 3966.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=24.79;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3966,388,0 chrXIII 905943 . A G 2982 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.25;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3015,321,0 chrXIII 905966 . C T 2402 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.64;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2435,240,0 chrXIII 906040 . G A 2852 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=25.24;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2885,286,0 chrXIII 906187 . G A 3686.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.0971;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=25.25;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3686,361,0 chrXIII 906221 . T C 3513.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=23.74;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3513,366,0 chrXIII 906242 . G C 3601.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.65;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3601,373,0 chrXIII 906340 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.99;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2882,294,0 chrXIII 906443 . G A 4406.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.92;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4406,430,0 chrXIII 906537 . G C 3687.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.2961;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.10;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,148:153:99:3687,376,0 chrXIII 906551 . G A 3019 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.53;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3052,304,0 chrXIII 906678 . C T 4927.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.1159;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.40;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4927,487,0 chrXIII 906784 . T C 4891.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.47;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4891,502,0 chrXIII 907438 . A G 3226.07 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.25;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3259,345,0 chrXIII 907448 . A C 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=153;Dels=0.00;FS=5.133;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-1.432;QD=20.05;ReadPosRankSum=1.709;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,149:153:99:3100,307,0 chrXIII 907585 . T C 5473.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=14.5736;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.43;SB=-3.350e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5473,559,0 chrXIII 907700 . T C 6472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=13.8856;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.564;QD=25.18;ReadPosRankSum=1.705;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:1,254:257:99:6472,655,0 chrXIII 907728 . T C 6276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=260;Dels=0.00;FS=2.738;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.137;QD=24.14;ReadPosRankSum=2.383;SB=-2.844e+03 GT:AD:DP:GQ:PL 1/1:2,258:260:99:6276,631,0 chrXIII 907830 . G A 5480.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.72;SB=-3.285e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5480,541,0 chrXIII 907951 . T A 5137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=253;Dels=0.00;FS=4.300;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;MQRankSum=1.513;QD=20.30;ReadPosRankSum=1.691;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:5137,514,0 chrXIII 907958 . A G 5087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=11.9553;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;MQRankSum=-0.559;QD=20.68;ReadPosRankSum=1.690;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:1,244:246:99:5087,520,0 chrXIII 907995 . C G 3996.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=18.1589;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=19.68;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:3996,418,0 chrXIII 908047 . T C 5184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=218;Dels=0.00;FS=2.994;HaplotypeScore=11.9826;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;MQRankSum=1.368;QD=23.78;ReadPosRankSum=2.359;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:5184,526,0 chrXIII 908105 . T C 5389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=233;Dels=0.00;FS=3.017;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;MQRankSum=2.259;QD=23.13;ReadPosRankSum=2.407;SB=-3.208e+03 GT:AD:DP:GQ:PL 1/1:2,230:233:99:5389,559,0 chrXIII 908138 . C T 4483.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.3142;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;QD=22.42;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4483,459,0 chrXIII 908167 . G A 2267 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=36.22;MQ0=0;QD=18.43;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2300,246,0 chrXIII 908179 . T G 1539 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=16.73;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1572,177,0 chrXIII 908190 . C T 976 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=0;QD=16.00;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1009,111,0 chrXIII 908196 . G C 820 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;QD=16.08;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:853,99,0 chrXIII 908203 . G A 632 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.413;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=0;MQRankSum=-1.733;QD=15.05;ReadPosRankSum=1.650;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:69:665,69,0 chrXIII 908206 . T C 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;DP=50;Dels=0.00;FS=7.993;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=28.02;MQ0=0;MQRankSum=1.633;QD=1.12;ReadPosRankSum=-3.276;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,16:50:86:86,0,358 chrXIII 908215 . G A 207.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.688;DP=54;Dels=0.00;FS=16.358;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=28.46;MQ0=0;MQRankSum=0.766;QD=3.83;ReadPosRankSum=3.019;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,32:54:99:237,0,225 chrXIII 908218 . C T 551 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;MQRankSum=-1.732;QD=11.24;ReadPosRankSum=-1.237;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,48:49:57:584,57,0 chrXIII 908221 . G A 218.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.043;DP=49;Dels=0.00;FS=9.369;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=28.99;MQ0=0;MQRankSum=-0.053;QD=4.45;ReadPosRankSum=5.178;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,32:49:99:248,0,204 chrXIII 908223 . A C 257 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.9779;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;MQRankSum=-1.733;QD=6.95;ReadPosRankSum=-0.998;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:1,32:37:30:290,30,0 chrXIII 908226 . C T 324 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.849;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5131;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=0;MQRankSum=-1.732;QD=6.23;ReadPosRankSum=-1.257;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,50:52:36:357,36,0 chrXIII 908274 . C A 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.419;DP=187;Dels=0.00;FS=32.487;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=30.73;MQ0=0;MQRankSum=-0.331;QD=15.45;ReadPosRankSum=5.210;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:15,172:187:65:2922,65,0 chrXIII 908287 . G A 2891.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.121;DP=205;Dels=0.00;FS=42.060;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;MQRankSum=-1.987;QD=14.11;ReadPosRankSum=3.893;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:22,183:205:2:2921,2,0 chrXIII 908298 . C T 139.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.094;DP=204;Dels=0.00;FS=59.323;HaplotypeScore=2.4370;MLEAC=1;MLEAF=0.500;MQ=30.19;MQ0=0;MQRankSum=3.936;QD=0.68;ReadPosRankSum=-1.793;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:175,29:204:99:169,0,2748 chrXIII 908300 . C T 126.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.588;DP=203;Dels=0.00;FS=59.775;HaplotypeScore=3.3839;MLEAC=1;MLEAF=0.500;MQ=30.19;MQ0=0;MQRankSum=4.030;QD=0.62;ReadPosRankSum=-1.092;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:174,29:203:99:156,0,2761 chrXIII 908306 . T G 220.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;DP=205;Dels=0.00;FS=87.346;HaplotypeScore=4.4168;MLEAC=1;MLEAF=0.500;MQ=30.23;MQ0=0;MQRankSum=4.183;QD=1.07;ReadPosRankSum=-1.894;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:163,41:205:99:250,0,2746 chrXIII 908314 . T C 2502.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.831;DP=211;Dels=0.00;FS=117.256;HaplotypeScore=4.3458;MLEAC=1;MLEAF=0.500;MQ=30.19;MQ0=0;MQRankSum=-4.197;QD=11.86;ReadPosRankSum=1.716;SB=-1.582e+03 GT:AD:DP:GQ:PL 0/1:58,152:211:99:2532,0,452 chrXIII 908320 . A G 2264.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.024;DP=206;Dels=0.00;FS=125.594;HaplotypeScore=4.2656;MLEAC=1;MLEAF=0.500;MQ=30.53;MQ0=0;MQRankSum=-3.518;QD=10.99;ReadPosRankSum=0.569;SB=-1.439e+03 GT:AD:DP:GQ:PL 0/1:67,139:206:99:2294,0,668 chrXIII 908329 . C G 754.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.694;DP=186;Dels=0.00;FS=84.645;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=30.93;MQ0=0;MQRankSum=2.414;QD=4.05;ReadPosRankSum=2.997;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,71:186:99:784,0,1675 chrXIII 908331 . A G 742.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.045;DP=179;Dels=0.00;FS=97.020;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=31.15;MQ0=0;MQRankSum=3.244;QD=4.15;ReadPosRankSum=4.140;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,70:179:99:772,0,1712 chrXIII 908341 . A G 947.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.577;DP=173;Dels=0.00;FS=69.661;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=31.63;MQ0=0;MQRankSum=1.964;QD=5.47;ReadPosRankSum=4.040;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,90:173:99:977,0,1134 chrXIII 908350 . T C 966.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;DP=148;Dels=0.00;FS=5.487;HaplotypeScore=11.2262;MLEAC=1;MLEAF=0.500;MQ=30.38;MQ0=0;MQRankSum=3.517;QD=6.53;ReadPosRankSum=4.751;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:51,94:148:99:996,0,256 chrXIII 908367 . A C 807.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;DP=115;Dels=0.00;FS=1.382;HaplotypeScore=28.8858;MLEAC=1;MLEAF=0.500;MQ=27.73;MQ0=0;MQRankSum=3.314;QD=7.02;ReadPosRankSum=4.650;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/1:28,87:115:99:837,0,132 chrXIII 908370 . C T 1263 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.214;DP=107;Dels=0.00;FS=8.253;HaplotypeScore=31.4079;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=0;MQRankSum=1.570;QD=11.80;ReadPosRankSum=0.081;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1296,132,0 chrXIII 908376 . T C 51.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.770;DP=107;Dels=0.00;FS=98.370;HaplotypeScore=30.2634;MLEAC=1;MLEAF=0.500;MQ=28.19;MQ0=0;MQRankSum=-2.273;QD=0.48;ReadPosRankSum=-4.396;SB=-2.497e+01 GT:AD:DP:GQ:PL 0/1:74,33:107:81:81,0,786 chrXIII 908383 . G A 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.236;DP=97;Dels=0.00;FS=135.182;HaplotypeScore=9.6153;MLEAC=1;MLEAF=0.500;MQ=28.30;MQ0=0;MQRankSum=1.447;QD=0.49;ReadPosRankSum=-3.059;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:69,28:97:78:78,0,666 chrXIII 908395 . G T 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.834;DP=82;Dels=0.00;FS=157.821;HaplotypeScore=10.7576;MLEAC=1;MLEAF=0.500;MQ=28.35;MQ0=1;MQRankSum=1.953;QD=0.15;ReadPosRankSum=3.723;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:58,23:82:42:42,0,589 chrXIII 908408 . C T 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.856;DP=58;Dels=0.00;FS=127.531;HaplotypeScore=5.9171;MLEAC=1;MLEAF=0.500;MQ=27.99;MQ0=2;MQRankSum=-0.555;QD=0.76;ReadPosRankSum=6.250;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:34,24:58:74:74,0,317 chrXIII 908414 . T A 55.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;DP=49;Dels=0.00;FS=112.343;HaplotypeScore=2.9513;MLEAC=1;MLEAF=0.500;MQ=28.00;MQ0=2;MQRankSum=-0.693;QD=1.12;ReadPosRankSum=5.733;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:24,23:49:85:85,0,228 chrXIII 908418 . C A 123.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.769;DP=46;Dels=0.00;FS=94.351;HaplotypeScore=10.6450;MLEAC=1;MLEAF=0.500;MQ=27.72;MQ0=2;MQRankSum=0.207;QD=2.67;ReadPosRankSum=-3.940;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:30,16:46:85:153,0,85 chrXIII 908419 . A G 112.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.350;DP=46;Dels=0.00;FS=105.813;HaplotypeScore=10.6450;MLEAC=1;MLEAF=0.500;MQ=27.72;MQ0=2;MQRankSum=1.398;QD=2.43;ReadPosRankSum=-4.363;SB=-2.995e+00 GT:AD:DP:GQ:PL 0/1:29,17:46:85:142,0,85 chrXIII 908422 . T C 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;DP=47;Dels=0.00;FS=64.238;HaplotypeScore=12.4295;MLEAC=1;MLEAF=0.500;MQ=27.75;MQ0=2;MQRankSum=0.102;QD=1.19;ReadPosRankSum=5.733;SB=-1.068e-03 GT:AD:DP:GQ:PL 0/1:22,25:47:86:86,0,148 chrXIII 908428 . A G 69.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;DP=32;Dels=0.00;FS=8.942;HaplotypeScore=10.6821;MLEAC=1;MLEAF=0.500;MQ=27.14;MQ0=2;MQRankSum=3.089;QD=2.16;ReadPosRankSum=3.825;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:7,25:32:42:99,0,42 chrXIII 908467 . A G 182.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.577;DP=57;Dels=0.00;FS=16.494;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.61;MQ0=0;MQRankSum=-0.609;QD=3.21;ReadPosRankSum=-3.327;SB=-4.348e+02 GT:AD:DP:GQ:PL 0/1:4,53:57:0:211,0,0 chrXIII 908470 . T C 206.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.281;DP=62;Dels=0.00;FS=16.444;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.71;MQ0=0;MQRankSum=-0.673;QD=3.33;ReadPosRankSum=-3.338;SB=-4.676e+02 GT:AD:DP:GQ:PL 1/1:4,58:62:2:236,2,0 chrXIII 908484 . T C 403 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.22;MQ0=0;QD=4.98;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:51:436,51,0 chrXIII 908511 . A C 393.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.588;DP=126;Dels=0.00;FS=22.330;HaplotypeScore=21.4188;MLEAC=1;MLEAF=0.500;MQ=25.46;MQ0=0;MQRankSum=-0.668;QD=3.12;ReadPosRankSum=6.645;SB=-1.089e+03 GT:AD:DP:GQ:PL 0/1:24,102:126:99:423,0,166 chrXIII 908514 . C T 682 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.375;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=17.5019;MLEAC=2;MLEAF=1.00;MQ=25.46;MQ0=0;MQRankSum=-0.440;QD=5.41;ReadPosRankSum=1.705;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:58:715,58,0 chrXIII 908516 . C T 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.389;DP=125;Dels=0.00;FS=48.556;HaplotypeScore=14.5794;MLEAC=1;MLEAF=0.500;MQ=25.43;MQ0=0;MQRankSum=4.990;QD=0.28;ReadPosRankSum=-1.860;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,16:125:65:65,0,462 chrXIII 908522 . T G 703 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=20.4637;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=0;QD=5.58;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:84:736,84,0 chrXIII 908534 . T G 344.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.575;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=35.5467;MLEAC=1;MLEAF=0.500;MQ=25.84;MQ0=0;MQRankSum=1.166;QD=3.28;ReadPosRankSum=1.676;SB=-6.280e+02 GT:AD:DP:GQ:PL 0/1:33,71:105:99:374,0,213 chrXIII 908535 . C T 320.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=46.2808;MLEAC=1;MLEAF=0.500;MQ=25.84;MQ0=0;MQRankSum=0.558;QD=3.05;ReadPosRankSum=0.873;SB=-6.350e+02 GT:AD:DP:GQ:PL 0/1:34,71:105:99:350,0,226 chrXIII 908537 . G A 354.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.299;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=48.2713;MLEAC=1;MLEAF=0.500;MQ=25.87;MQ0=0;MQRankSum=1.458;QD=3.34;ReadPosRankSum=0.020;SB=-6.420e+02 GT:AD:DP:GQ:PL 0/1:35,71:106:99:384,0,246 chrXIII 908539 . G T 401.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.372;DP=106;Dels=0.00;FS=12.653;HaplotypeScore=60.7618;MLEAC=1;MLEAF=0.500;MQ=25.87;MQ0=0;MQRankSum=0.672;QD=3.78;ReadPosRankSum=-3.713;SB=-6.570e+02 GT:AD:DP:GQ:PL 0/1:24,71:106:99:431,0,128 chrXIII 908545 . A G 85.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.170;DP=106;Dels=0.00;FS=17.158;HaplotypeScore=105.8189;MLEAC=1;MLEAF=0.500;MQ=25.87;MQ0=0;MQRankSum=1.702;QD=0.80;ReadPosRankSum=6.952;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,23:106:99:115,0,510 chrXIII 908549 . G A 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.040;DP=97;Dels=0.00;FS=39.195;HaplotypeScore=94.4926;MLEAC=1;MLEAF=0.500;MQ=26.11;MQ0=0;MQRankSum=3.239;QD=0.27;ReadPosRankSum=4.911;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,16:97:56:56,0,524 chrXIII 908550 . C T 145.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.712;DP=96;Dels=0.00;FS=3.004;HaplotypeScore=76.8042;MLEAC=1;MLEAF=0.500;MQ=26.08;MQ0=0;MQRankSum=0.979;QD=1.51;ReadPosRankSum=3.204;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:68,28:96:99:175,0,357 chrXIII 908552 . C T 341.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;DP=89;Dels=0.00;FS=34.013;HaplotypeScore=76.0156;MLEAC=1;MLEAF=0.500;MQ=25.95;MQ0=0;MQRankSum=3.439;QD=3.83;ReadPosRankSum=-2.298;SB=-3.450e+02 GT:AD:DP:GQ:PL 0/1:19,70:89:99:371,0,124 chrXIII 908554 . A G 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.715;DP=90;Dels=0.00;FS=39.557;HaplotypeScore=85.9569;MLEAC=1;MLEAF=0.500;MQ=25.99;MQ0=0;MQRankSum=3.330;QD=0.38;ReadPosRankSum=4.385;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,16:90:64:64,0,425 chrXIII 908558 . T A,G 499.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.867;DP=83;Dels=0.00;FS=15.000;HaplotypeScore=24.5806;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.98;MQ0=0;MQRankSum=-1.647;QD=6.01;ReadPosRankSum=2.916;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/2:3,60,20:83:99:559,176,128,383,0,356 chrXIII 908563 . A G 84.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;DP=84;Dels=0.00;FS=63.320;HaplotypeScore=132.4102;MLEAC=1;MLEAF=0.500;MQ=26.27;MQ0=0;MQRankSum=-3.863;QD=1.00;ReadPosRankSum=6.146;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,17:84:99:114,0,383 chrXIII 908566 . T C 209.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.018;DP=82;Dels=0.00;FS=18.213;HaplotypeScore=155.0933;MLEAC=1;MLEAF=0.500;MQ=26.32;MQ0=0;MQRankSum=2.974;QD=2.55;ReadPosRankSum=-1.826;SB=-1.630e+02 GT:AD:DP:GQ:PL 0/1:31,51:82:99:239,0,250 chrXIII 908570 . T G 148.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.971;DP=81;Dels=0.00;FS=2.334;HaplotypeScore=143.0177;MLEAC=1;MLEAF=0.500;MQ=26.42;MQ0=0;MQRankSum=1.751;QD=1.83;ReadPosRankSum=0.318;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:60,21:81:99:178,0,332 chrXIII 908571 . C T 158.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.469;DP=81;Dels=0.00;FS=2.334;HaplotypeScore=152.0938;MLEAC=1;MLEAF=0.500;MQ=26.42;MQ0=0;MQRankSum=1.051;QD=1.95;ReadPosRankSum=1.051;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:60,21:81:99:188,0,295 chrXIII 908573 . G A 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.272;DP=73;Dels=0.00;FS=21.466;HaplotypeScore=158.9721;MLEAC=1;MLEAF=0.500;MQ=26.41;MQ0=0;MQRankSum=2.781;QD=1.33;ReadPosRankSum=0.413;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,14:73:99:127,0,375 chrXIII 908575 . G T 117.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.784;DP=75;Dels=0.00;FS=30.146;HaplotypeScore=145.1156;MLEAC=1;MLEAF=0.500;MQ=26.62;MQ0=0;MQRankSum=3.448;QD=1.56;ReadPosRankSum=1.880;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,14:75:99:147,0,206 chrXIII 908578 . T C 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;DP=94;Dels=0.00;FS=79.907;HaplotypeScore=143.9849;MLEAC=1;MLEAF=0.500;MQ=27.22;MQ0=0;MQRankSum=-4.494;QD=0.33;ReadPosRankSum=5.022;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,10:94:61:61,0,416 chrXIII 908581 . A G 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;DP=90;Dels=0.00;FS=86.222;HaplotypeScore=120.4447;MLEAC=1;MLEAF=0.500;MQ=27.48;MQ0=0;MQRankSum=-4.058;QD=0.38;ReadPosRankSum=4.925;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,10:90:64:64,0,395 chrXIII 908586 . C T 132.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.746;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=64.6901;MLEAC=1;MLEAF=0.500;MQ=27.39;MQ0=0;MQRankSum=3.083;QD=1.67;ReadPosRankSum=-3.600;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:54,25:79:99:162,0,340 chrXIII 908588 . C T 321.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.088;DP=79;Dels=0.00;FS=100.412;HaplotypeScore=64.6901;MLEAC=1;MLEAF=0.500;MQ=27.39;MQ0=0;MQRankSum=4.613;QD=4.06;ReadPosRankSum=1.074;SB=-5.974e-03 GT:AD:DP:GQ:PL 0/1:23,56:79:99:351,0,179 chrXIII 908594 . T A,G 452.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.358;DP=90;Dels=0.00;FS=5.493;HaplotypeScore=5.0692;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.92;MQ0=0;MQRankSum=-0.871;QD=5.02;ReadPosRankSum=3.358;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/2:4,53,33:90:99:512,238,208,274,0,241 chrXIII 908599 . G A 469.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.729;DP=98;Dels=0.00;FS=131.463;HaplotypeScore=32.3680;MLEAC=1;MLEAF=0.500;MQ=28.11;MQ0=0;MQRankSum=4.923;QD=4.79;ReadPosRankSum=0.640;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:10,88:98:52:499,0,52 chrXIII 908602 . T C 299.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.002;DP=111;Dels=0.00;FS=41.019;HaplotypeScore=33.1567;MLEAC=1;MLEAF=0.500;MQ=28.22;MQ0=0;MQRankSum=3.744;QD=2.69;ReadPosRankSum=3.738;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,65:111:99:329,0,236 chrXIII 908606 . T G 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.094;DP=122;Dels=0.00;FS=141.393;HaplotypeScore=31.0513;MLEAC=1;MLEAF=0.500;MQ=28.21;MQ0=0;MQRankSum=-4.317;QD=0.11;ReadPosRankSum=-2.758;SB=-3.008e+00 GT:AD:DP:GQ:PL 0/1:112,10:122:43:43,0,602 chrXIII 908608 . A G 344.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.178;DP=125;Dels=0.00;FS=39.589;HaplotypeScore=32.6287;MLEAC=1;MLEAF=0.500;MQ=28.23;MQ0=0;MQRankSum=3.859;QD=2.75;ReadPosRankSum=4.384;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,72:125:99:374,0,301 chrXIII 908617 . G C 412.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.086;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.5188;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=0;MQRankSum=1.895;QD=3.05;ReadPosRankSum=1.645;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:47,86:135:99:442,0,212 chrXIII 908629 . A G 214.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.474;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=0;MQRankSum=0.055;QD=1.41;ReadPosRankSum=1.565;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,51:152:99:244,0,651 chrXIII 908634 . A C 1111 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=7.21;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,154:154:99:1144,120,0 chrXIII 908638 . T C 296.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.277;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.88;MQ0=0;MQRankSum=0.184;QD=1.92;ReadPosRankSum=2.683;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,54:154:99:326,0,645 chrXIII 908647 . G A 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;DP=157;Dels=0.00;FS=12.041;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=0;MQRankSum=-0.980;QD=0.10;ReadPosRankSum=1.944;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:99,58:157:45:45,0,625 chrXIII 908659 . T C 697.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.334;DP=190;Dels=0.00;FS=89.618;HaplotypeScore=2.2424;MLEAC=1;MLEAF=0.500;MQ=29.98;MQ0=0;MQRankSum=-0.296;QD=3.67;ReadPosRankSum=-2.810;SB=-9.430e+02 GT:AD:DP:GQ:PL 0/1:89,101:190:99:727,0,397 chrXIII 908660 . T C 754.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730;DP=194;Dels=0.00;FS=95.339;HaplotypeScore=2.2424;MLEAC=1;MLEAF=0.500;MQ=30.20;MQ0=0;MQRankSum=-0.128;QD=3.89;ReadPosRankSum=-2.707;SB=-9.870e+02 GT:AD:DP:GQ:PL 0/1:89,105:194:99:784,0,401 chrXIII 908671 . G A 227.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.795;DP=196;Dels=0.00;FS=116.348;HaplotypeScore=9.8191;MLEAC=1;MLEAF=0.500;MQ=32.04;MQ0=0;MQRankSum=-1.073;QD=1.16;ReadPosRankSum=1.931;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:131,65:196:99:257,0,1617 chrXIII 908678 . C T 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.571;DP=196;Dels=0.00;FS=83.787;HaplotypeScore=13.1767;MLEAC=1;MLEAF=0.500;MQ=34.73;MQ0=0;MQRankSum=-0.235;QD=0.18;ReadPosRankSum=0.643;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:146,50:196:65:65,0,1856 chrXIII 908679 . T C 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;DP=197;Dels=0.00;FS=83.534;HaplotypeScore=13.1767;MLEAC=1;MLEAF=0.500;MQ=35.30;MQ0=0;MQRankSum=-1.665;QD=0.12;ReadPosRankSum=-0.045;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:146,50:197:53:53,0,1929 chrXIII 908906 . A T 3948.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=21.11;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3948,394,0 chrXIII 908913 . G A 4179.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=21.77;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4179,409,0 chrXIII 909175 . G A 4172.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.43;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4172,427,0 chrXIII 909413 . G A 2726 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=21.46;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2759,279,0 chrXIII 909416 . T C 2738 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.393;DP=135;Dels=0.00;FS=16.086;HaplotypeScore=2.7499;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-0.320;QD=20.28;ReadPosRankSum=3.275;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:4,130:135:99:2771,279,0 chrXIII 909421 . C A 2928 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.1159;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=20.62;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:2961,303,0 chrXIII 909483 . G C 3968.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.77;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:3968,400,0 chrXIII 909590 . C T 6332.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=25.64;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:6332,628,0 chrXIII 909664 . T C 6060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.975;QD=25.36;ReadPosRankSum=1.688;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:6060,613,0 chrXIII 909772 . A C 5194.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=9.6344;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.29;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:5194,538,0 chrXIII 909786 . G C 5061.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=5.0755;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=20.00;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,250:253:99:5061,520,0 chrXIII 909807 . G C 5088.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=19.13;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:5088,526,0 chrXIII 909879 . A G 5786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=11.8267;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=0.504;QD=20.45;ReadPosRankSum=1.720;SB=-3.920e+03 GT:AD:DP:GQ:PL 1/1:1,281:283:99:5786,595,0 chrXIII 909892 . A T 5423.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.16;SB=-3.533e+03 GT:AD:DP:GQ:PL 1/1:0,283:283:99:5423,565,0 chrXIII 909920 . G A 5198.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=18.8686;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.05;SB=-3.495e+03 GT:AD:DP:GQ:PL 1/1:0,286:288:99:5198,538,0 chrXIII 909953 . C G 5307.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.98;SB=-3.141e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:5307,562,0 chrXIII 909982 . A G 4917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=230;Dels=0.00;FS=6.833;HaplotypeScore=4.0258;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=0.934;QD=21.38;ReadPosRankSum=2.407;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:2,228:230:99:4917,511,0 chrXIII 909989 . G A 5020.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=5.1005;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.02;SB=-3.074e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5020,499,0 chrXIII 910076 . A G 5322.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=7.1625;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.84;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5322,550,0 chrXIII 910262 . G A 5232.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.7590;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=25.15;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:5232,523,0 chrXIII 910346 . A G 4614.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=20.15;SB=-2.946e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4614,492,0 chrXIII 910352 . G A 4532.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=20.23;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4532,460,0 chrXIII 910375 . G A 4253.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=17.22;SB=-3.369e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:4253,427,0 chrXIII 910380 . C T 4269.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=16.87;SB=-3.429e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:4269,421,0 chrXIII 910439 . G A 5348.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=8.9922;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.81;SB=-3.214e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:5348,532,0 chrXIII 910543 . T C 6339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=267;Dels=0.00;FS=3.011;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.115;QD=23.74;ReadPosRankSum=2.431;SB=-3.371e+03 GT:AD:DP:GQ:PL 1/1:2,264:267:99:6339,664,0 chrXIII 910574 . A G 6265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.972;DP=254;Dels=0.00;FS=9.397;HaplotypeScore=5.4725;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=-0.877;QD=24.67;ReadPosRankSum=2.941;SB=-3.616e+03 GT:AD:DP:GQ:PL 1/1:3,251:254:99:6265,628,0 chrXIII 910606 . T C 6386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=273;Dels=0.00;FS=9.978;HaplotypeScore=14.2915;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-0.118;QD=23.39;ReadPosRankSum=2.937;SB=-3.495e+03 GT:AD:DP:GQ:PL 1/1:3,269:273:99:6386,655,0 chrXIII 910733 . C T 4343.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.82;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4343,430,0 chrXIII 910814 . G A 3657.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.71;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3657,367,0 chrXIII 910955 . A T 2270 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2303,231,0 chrXIII 911382 . A T 5840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=242;Dels=0.00;FS=12.129;HaplotypeScore=16.5989;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.012;QD=24.13;ReadPosRankSum=2.888;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:3,239:242:99:5840,598,0 chrXIII 911502 . T C 8229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=358;Dels=0.00;FS=5.853;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.615;QD=22.99;ReadPosRankSum=2.969;SB=-4.481e+03 GT:AD:DP:GQ:PL 1/1:3,354:358:99:8229,841,0 chrXIII 912021 . T C 7113.01 PASS AC=2;AF=1.00;AN=2;DP=354;Dels=0.00;FS=0.000;HaplotypeScore=21.2747;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.09;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:0,351:354:99:7113,724,0 chrXIII 912213 . C G 5088.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=6.7190;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=22.03;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5088,523,0 chrXIII 912216 . T G 5059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.3175;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-1.339;QD=21.90;ReadPosRankSum=1.717;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:1,228:231:99:5059,517,0 chrXIII 912263 . T C 4087.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.8841;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.75;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4087,412,0 chrXIII 912411 . A G 5491.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.85;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5491,568,0 chrXIII 912463 . C G 3834.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.10;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3834,397,0 chrXIII 912626 . C T 2681 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.6826;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.15;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2714,268,0 chrXIII 912804 . A G 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=127;Dels=0.00;FS=6.310;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-1.481;QD=24.93;ReadPosRankSum=1.676;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,123:127:99:3199,328,0 chrXIII 912820 . T C 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.444;QD=25.02;ReadPosRankSum=1.675;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3061,318,0 chrXIII 912879 . G A 3898.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=14.0301;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.48;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3898,388,0 chrXIII 913190 . G A 4470.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=18.3637;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=25.40;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4470,436,0 chrXIII 913429 . G A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.6921;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.47;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3825,394,0 chrXIII 913447 . A G 3017 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.66;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3050,321,0 chrXIII 913525 . T C 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.00;FS=5.374;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-1.140;QD=20.72;ReadPosRankSum=1.624;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4041,412,0 chrXIII 913531 . A G 4215.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.3481;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.66;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4215,427,0 chrXIII 913648 . A G 3161 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.07;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3194,328,0 chrXIII 914143 . A G 4682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.262;QD=23.53;ReadPosRankSum=1.680;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4682,478,0 chrXIII 914575 . T C 3185 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.13;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3218,331,0 chrXIII 914895 . A T 2490 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.41;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2523,261,0 chrXIII 914897 . T C 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.050;QD=20.52;ReadPosRankSum=2.409;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2537,258,0 chrXIII 915130 . A T 3515.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.2502;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.68;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3515,355,0 chrXIII 915182 . A G 5690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=211;Dels=0.00;FS=5.979;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.181;QD=26.97;ReadPosRankSum=1.699;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:5690,571,0 chrXIII 915420 . A C 6260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-1.316;QD=24.26;ReadPosRankSum=1.692;SB=-3.346e+03 GT:AD:DP:GQ:PL 1/1:1,257:258:99:6260,649,0 chrXIII 915435 . A T 5921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-0.942;QD=23.59;ReadPosRankSum=1.718;SB=-3.034e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5921,598,0 chrXIII 916916 . C T 4279.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.3285;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.43;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4279,430,0 chrXIII 917195 . G C 3881.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.4092;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.66;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3881,405,0 chrXIII 917437 . C T 3760.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=25.07;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3760,391,0 chrXIII 917493 . C T 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.367;DP=137;Dels=0.02;FS=3.385;HaplotypeScore=29.3524;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;MQRankSum=-0.508;QD=25.08;ReadPosRankSum=-0.586;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3436,323,0 chrXIII 917789 . C T 2161 filter AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=25.46;MQ0=23;QD=14.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2194,228,0 chrXIII 917863 . G A 57.97 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.09;MQ0=13;QD=1.81;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:9:90,9,0 chrXIII 920069 . G A 209.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.802;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=1;MLEAF=0.500;MQ=12.32;MQ0=135;MQRankSum=1.100;QD=0.95;ReadPosRankSum=-0.578;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:155,63:219:99:239,0,1027 chrXIII 922667 . C T 452 filter AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=9.34;MQ0=82;QD=2.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,188:188:66:485,66,0 chrXIII 922946 . C T 63.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=11;Dels=0.00;FS=9.031;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.57;MQ0=2;MQRankSum=0.747;QD=5.82;ReadPosRankSum=0.747;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:1,9:11:9:96,9,0 chrXIII 922949 . T C 55.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=11;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.29;MQ0=3;MQRankSum=0.747;QD=5.09;ReadPosRankSum=0.747;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:1,9:11:9:88,9,0 chrXIII 922967 . T C 40.97 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.09;MQ0=32;QD=0.91;SB=-9.547e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:9:73,9,0 chrXIII 923106 . C T 274.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.245;DP=58;Dels=0.00;FS=12.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.17;MQ0=1;MQRankSum=-2.373;QD=4.72;ReadPosRankSum=-2.309;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:30,28:58:99:304,0,611 chrXIII 923132 . G T 1696 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.04;MQ0=1;QD=16.31;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1729,174,0 chrXIII 923175 . C A 1478 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.34;MQ0=0;QD=9.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:1511,159,0 chrXIII 923178 . A G 1624 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.99;MQ0=0;QD=9.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:1657,168,0 chrXIII 923183 . A G 1489 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.01;MQ0=0;QD=9.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:1522,165,0 chrXIII 923197 . A G 1363 filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;QD=9.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:1396,150,0 chrXIII 923206 . C T 1104 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=8.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1137,114,0 chrXIII 923213 . T C 821 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=7.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:106:87:854,87,0 chrXIII 923214 . A G 751 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=7.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:106:84:784,84,0 chrXIII 923238 . G A 432 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;QD=12.00;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:45:465,45,0 chrXIII 923239 . C T 435 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;QD=12.08;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:45:468,45,0 chrXIII 923241 . G A 448 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;QD=12.44;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:45:481,45,0 chrXIII 923244 . A T 453 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;QD=12.58;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:45:486,45,0 chrXIII 923260 . G A 199.03 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=10.8020;MLEAC=2;MLEAF=1.00;MQ=25.48;MQ0=0;QD=8.29;SB=-4.093e-02 GT:AD:DP:GQ:PL 1/1:0,24:24:24:232,24,0 chrXIII 923299 . T C 476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=32;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.79;MQ0=0;MQRankSum=0.433;QD=14.87;ReadPosRankSum=1.625;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,31:32:54:509,54,0 chrXIII 923305 . A C 754 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=0;QD=13.00;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:84:787,84,0 chrXIII 923430 . A G 2715 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=29.36;MQ0=1;QD=21.21;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2748,288,0 chrXIII 923455 . G A 220 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.45;MQ0=1;QD=8.46;SB=-7.695e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:30:253,30,0 chrXIII 923478 . G T 61.97 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.39;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:94,9,0 chrXIII 923486 . T C 84.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=0;MQRankSum=0.747;QD=10.56;ReadPosRankSum=0.747;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:1,7:8:12:117,12,0 chrXIII 923508 . A C 480 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=0;QD=15.48;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:51:513,51,0 chrXIII 923556 . T C 1999 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;QD=20.40;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2032,213,0 chrXIII 923566 . A G 2187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.980;DP=106;Dels=0.00;FS=10.253;HaplotypeScore=101.5938;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;MQRankSum=-0.131;QD=20.63;ReadPosRankSum=1.569;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2220,228,0 chrXIII 923585 . T C 2294 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.247;DP=105;Dels=0.00;FS=12.430;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;MQRankSum=0.709;QD=21.85;ReadPosRankSum=0.313;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2327,237,0 chrXIII 923589 . G A 2191 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=96;Dels=0.00;FS=19.823;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;MQRankSum=0.108;QD=22.82;ReadPosRankSum=0.180;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2224,219,0 chrXIII 923602 . T G 1823 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.9827;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.96;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1856,192,0 chrXIII 923606 . A T 1250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.406;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.9827;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.490;QD=15.43;ReadPosRankSum=-1.503;SB=-2.400e+01 GT:AD:DP:GQ:PL 1/1:21,60:81:99:1283,126,0 chrXIII 923615 . A T 315.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.086;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.5626;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=1.187;QD=4.26;ReadPosRankSum=-0.420;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,21:74:99:345,0,922 chrXIII 923621 . A G 289.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.884;DP=70;Dels=0.00;FS=10.607;HaplotypeScore=32.2292;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=1.461;QD=4.13;ReadPosRankSum=-0.359;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:49,21:70:99:319,0,849 chrXIII 923629 . A T 987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=33.2234;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.163;QD=18.62;ReadPosRankSum=1.667;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1020,108,0 chrXIII 923636 . C A 596 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.55;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:63:629,63,0 chrXIII 923654 . T C 268.64 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.922;DP=22;Dels=0.00;FS=11.875;HaplotypeScore=2.9860;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.184;QD=12.21;ReadPosRankSum=2.101;SB=-5.608e-01 GT:AD:DP:GQ:PL 1/1:6,16:22:11:301,11,0 chrXIII 923914 . C G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.47;MQ0=3;MQRankSum=0.000;QD=1.80;ReadPosRankSum=0.572;SB=1.24 GT:AD:DP:GQ:PL 1/1:8,3:11:6:51,6,0 chrXIII 924096 . G A 128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.148;DP=18;Dels=0.00;FS=13.030;HaplotypeScore=17.4820;MLEAC=1;MLEAF=0.500;MQ=23.69;MQ0=0;MQRankSum=-1.060;QD=7.11;ReadPosRankSum=-2.208;SB=1.45 GT:AD:DP:GQ:PL 0/1:9,9:18:39:158,0,39 chrXIII 924106 . A T 199.35 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=13.6304;MLEAC=1;MLEAF=0.500;MQ=23.39;MQ0=0;MQRankSum=-0.967;QD=10.49;ReadPosRankSum=-1.611;SB=-5.490e+01 GT:AD:DP:GQ:PL 1/1:2,10:19:8:231,8,0 chrXIII 924136 . C G 212 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.19;MQ0=1;QD=17.67;SB=-8.695e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:30:245,30,0 chrXIII 924155 . C T 245 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=22.47;MQ0=1;QD=17.50;SB=-1.479e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:33:278,33,0 chrXIV 6401 . C T 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=1;MLEAF=0.500;MQ=13.42;MQ0=48;MQRankSum=-2.372;QD=0.41;ReadPosRankSum=-1.910;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,17:63:56:56,0,198 chrXIV 6602 . C A 318.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;DP=130;Dels=0.00;FS=13.950;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.61;MQ0=17;MQRankSum=0.798;QD=2.45;ReadPosRankSum=-2.858;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,31:130:99:348,0,1515 chrXIV 6603 . A G 318.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.633;DP=128;Dels=0.00;FS=13.950;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.80;MQ0=15;MQRankSum=0.044;QD=2.48;ReadPosRankSum=-3.572;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,29:128:99:348,0,1531 chrXIV 6613 . A G 334.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.895;DP=121;Dels=0.00;FS=13.950;HaplotypeScore=95.0617;MLEAC=1;MLEAF=0.500;MQ=25.64;MQ0=7;MQRankSum=0.986;QD=2.76;ReadPosRankSum=-5.955;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,29:121:99:364,0,1502 chrXIV 6619 . C A 713.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.884;DP=184;Dels=0.00;FS=40.396;HaplotypeScore=130.8634;MLEAC=1;MLEAF=0.500;MQ=24.87;MQ0=9;MQRankSum=1.064;QD=3.88;ReadPosRankSum=10.419;SB=-4.120e+02 GT:AD:DP:GQ:PL 0/1:95,88:184:99:743,0,370 chrXIV 6717 . T C 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;DP=491;Dels=0.03;FS=29.399;HaplotypeScore=1123.2222;MLEAC=1;MLEAF=0.500;MQ=23.17;MQ0=0;MQRankSum=-3.471;QD=0.07;ReadPosRankSum=1.104;SB=-1.350e+02 GT:AD:DP:GQ:PL 0/1:227,248:475:64:64,0,199 chrXIV 6723 . T A 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;DP=514;Dels=0.03;FS=365.923;HaplotypeScore=956.7483;MLEAC=1;MLEAF=0.500;MQ=23.15;MQ0=0;MQRankSum=0.568;QD=0.06;ReadPosRankSum=0.908;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:465,33:498:63:63,0,432 chrXIV 6727 . G C 123.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;DP=495;Dels=0.03;FS=135.177;HaplotypeScore=690.4609;MLEAC=1;MLEAF=0.500;MQ=22.93;MQ0=0;MQRankSum=0.135;QD=0.25;ReadPosRankSum=1.452;SB=-5.380e+02 GT:AD:DP:GQ:PL 0/1:231,104:479:99:153,0,103 chrXIV 6731 . G C 736 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=510;Dels=0.03;FS=0.000;HaplotypeScore=765.1495;MLEAC=2;MLEAF=1.00;MQ=23.02;MQ0=0;QD=1.44;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,493:494:84:769,84,0 chrXIV 6734 . T C 110.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.853;DP=530;Dels=0.00;FS=5.950;HaplotypeScore=765.6391;MLEAC=1;MLEAF=0.500;MQ=23.07;MQ0=0;MQRankSum=-3.282;QD=0.21;ReadPosRankSum=0.880;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:401,129:530:99:140,0,489 chrXIV 6738 . T C 435.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.508;DP=522;Dels=0.01;FS=426.471;HaplotypeScore=535.5075;MLEAC=1;MLEAF=0.500;MQ=23.28;MQ0=0;MQRankSum=-1.479;QD=0.83;ReadPosRankSum=2.121;SB=-8.302e+01 GT:AD:DP:GQ:PL 0/1:51,422:519:87:465,0,87 chrXIV 6739 . C A 518.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.949;DP=523;Dels=0.00;FS=316.614;HaplotypeScore=347.8394;MLEAC=1;MLEAF=0.500;MQ=23.26;MQ0=0;MQRankSum=1.662;QD=0.99;ReadPosRankSum=2.363;SB=-8.002e+01 GT:AD:DP:GQ:PL 0/1:102,421:523:99:548,0,121 chrXIV 6743 . T C 519.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;DP=565;Dels=0.00;FS=8.956;HaplotypeScore=471.2301;MLEAC=1;MLEAF=0.500;MQ=23.40;MQ0=0;MQRankSum=4.971;QD=0.92;ReadPosRankSum=-0.079;SB=-4.570e+02 GT:AD:DP:GQ:PL 0/1:208,357:565:99:549,0,188 chrXIV 6765 . C A,T 1013.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.533;DP=498;Dels=0.00;FS=43.667;HaplotypeScore=135.3602;MLEAC=1,1;MLEAF=0.500,0.500;MQ=23.27;MQ0=1;MQRankSum=3.171;QD=2.03;ReadPosRankSum=2.082;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/2:48,52,398:498:99:1073,704,712,322,0,288 chrXIV 6768 . A C 119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.740;DP=495;Dels=0.00;FS=5.039;HaplotypeScore=179.3365;MLEAC=1;MLEAF=0.500;MQ=23.28;MQ0=2;MQRankSum=0.936;QD=0.24;ReadPosRankSum=1.869;SB=-1.500e+02 GT:AD:DP:GQ:PL 0/1:345,148:493:99:149,0,964 chrXIV 6781 . C T 895.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.184;DP=413;Dels=0.00;FS=34.472;HaplotypeScore=76.2199;MLEAC=1;MLEAF=0.500;MQ=23.22;MQ0=3;MQRankSum=2.448;QD=2.17;ReadPosRankSum=-0.143;SB=-6.920e+02 GT:AD:DP:GQ:PL 0/1:36,377:413:99:925,0,178 chrXIV 6786 . C T 563.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.064;DP=321;Dels=0.01;FS=23.015;HaplotypeScore=129.9473;MLEAC=1;MLEAF=0.500;MQ=23.41;MQ0=4;MQRankSum=0.557;QD=1.75;ReadPosRankSum=0.507;SB=-7.300e+02 GT:AD:DP:GQ:PL 0/1:35,283:318:99:593,0,224 chrXIV 6788 . C T 179.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.636;DP=323;Dels=0.00;FS=78.118;HaplotypeScore=132.0587;MLEAC=1;MLEAF=0.500;MQ=23.41;MQ0=4;MQRankSum=0.938;QD=0.55;ReadPosRankSum=2.698;SB=-5.130e+02 GT:AD:DP:GQ:PL 0/1:49,274:323:99:209,0,288 chrXIV 6789 . A C 178.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.159;DP=323;Dels=0.01;FS=37.946;HaplotypeScore=142.5532;MLEAC=1;MLEAF=0.500;MQ=23.41;MQ0=4;MQRankSum=1.892;QD=0.55;ReadPosRankSum=0.688;SB=-5.400e+02 GT:AD:DP:GQ:PL 0/1:40,275:320:99:208,0,302 chrXIV 6791 . C T 485.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.513;DP=327;Dels=0.00;FS=118.426;HaplotypeScore=160.5811;MLEAC=1;MLEAF=0.500;MQ=23.44;MQ0=4;MQRankSum=-0.015;QD=1.48;ReadPosRankSum=1.421;SB=-4.310e+02 GT:AD:DP:GQ:PL 0/1:56,268:326:99:515,0,255 chrXIV 6792 . C T 556.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.187;DP=328;Dels=0.00;FS=128.314;HaplotypeScore=160.5884;MLEAC=1;MLEAF=0.500;MQ=23.46;MQ0=4;MQRankSum=0.883;QD=1.70;ReadPosRankSum=1.527;SB=-3.850e+02 GT:AD:DP:GQ:PL 0/1:59,268:327:99:586,0,255 chrXIV 6807 . C T 284.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.628;DP=297;Dels=0.00;FS=54.641;HaplotypeScore=81.6164;MLEAC=1;MLEAF=0.500;MQ=23.13;MQ0=15;MQRankSum=0.433;QD=0.96;ReadPosRankSum=-0.252;SB=-3.870e+02 GT:AD:DP:GQ:PL 0/1:94,203:297:99:314,0,377 chrXIV 6818 . A T 723 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=224;Dels=0.00;FS=92.745;HaplotypeScore=18.5383;MLEAC=2;MLEAF=1.00;MQ=23.10;MQ0=15;MQRankSum=-1.305;QD=3.23;ReadPosRankSum=5.450;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:12,212:224:78:756,78,0 chrXIV 6829 . T C 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.817;DP=172;Dels=0.00;FS=135.492;HaplotypeScore=123.9810;MLEAC=1;MLEAF=0.500;MQ=22.73;MQ0=15;MQRankSum=1.926;QD=0.27;ReadPosRankSum=1.626;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:156,14:172:77:77,0,382 chrXIV 6831 . C A 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;DP=159;Dels=0.00;FS=134.641;HaplotypeScore=123.0232;MLEAC=1;MLEAF=0.500;MQ=22.60;MQ0=14;MQRankSum=2.886;QD=0.31;ReadPosRankSum=0.906;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:144,15:159:79:79,0,388 chrXIV 6832 . T C 249.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.097;DP=148;Dels=0.00;FS=27.356;HaplotypeScore=147.4811;MLEAC=1;MLEAF=0.500;MQ=22.45;MQ0=14;MQRankSum=2.281;QD=1.68;ReadPosRankSum=-1.815;SB=-3.007e+00 GT:AD:DP:GQ:PL 0/1:78,70:148:99:279,0,135 chrXIV 6833 . A C 55.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;DP=147;Dels=0.00;FS=129.809;HaplotypeScore=158.3295;MLEAC=1;MLEAF=0.500;MQ=22.49;MQ0=14;MQRankSum=2.269;QD=0.37;ReadPosRankSum=1.103;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,14:147:85:85,0,353 chrXIV 6837 . T A 354.52 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.994;DP=137;Dels=0.00;FS=44.458;HaplotypeScore=158.0212;MLEAC=1;MLEAF=0.500;MQ=22.16;MQ0=14;MQRankSum=3.132;QD=2.59;ReadPosRankSum=-4.032;SB=-2.425e+02 GT:AD:DP:GQ:PL 0/1:87,30:137:6:384,0,6 chrXIV 6841 . C T 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;DP=119;Dels=0.00;FS=3.770;HaplotypeScore=127.2988;MLEAC=1;MLEAF=0.500;MQ=21.14;MQ0=14;MQRankSum=1.139;QD=0.29;ReadPosRankSum=0.237;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:97,22:119:65:65,0,143 chrXIV 6843 . G A 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;DP=121;Dels=0.00;FS=68.574;HaplotypeScore=86.5800;MLEAC=1;MLEAF=0.500;MQ=21.32;MQ0=14;MQRankSum=2.161;QD=0.41;ReadPosRankSum=1.543;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,11:121:79:79,0,119 chrXIV 6844 . C T 211.54 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.209;DP=123;Dels=0.00;FS=136.540;HaplotypeScore=76.6264;MLEAC=2;MLEAF=1.00;MQ=21.46;MQ0=14;MQRankSum=2.742;QD=1.72;ReadPosRankSum=-0.380;SB=-2.076e+02 GT:AD:DP:GQ:PL 1/1:75,48:123:2:241,2,0 chrXIV 6848 . T C 151.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.442;DP=136;Dels=0.00;FS=62.662;HaplotypeScore=60.9515;MLEAC=1;MLEAF=0.500;MQ=23.00;MQ0=14;MQRankSum=3.047;QD=1.11;ReadPosRankSum=-3.733;SB=-2.090e+02 GT:AD:DP:GQ:PL 0/1:75,61:136:51:181,0,51 chrXIV 6906 . G C 5297.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.150;DP=537;Dels=0.00;FS=42.003;HaplotypeScore=152.4650;MLEAC=2;MLEAF=1.00;MQ=23.00;MQ0=7;MQRankSum=-2.579;QD=9.86;ReadPosRankSum=0.067;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:21,512:536:99:5297,458,0 chrXIV 6907 . A G 1017.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.896;DP=540;Dels=0.00;FS=7.702;HaplotypeScore=151.6763;MLEAC=1;MLEAF=0.500;MQ=23.01;MQ0=8;MQRankSum=0.758;QD=1.88;ReadPosRankSum=8.278;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:420,110:540:99:1047,0,3300 chrXIV 6912 . C G 2757.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.558;DP=571;Dels=0.00;FS=23.789;HaplotypeScore=151.7500;MLEAC=1;MLEAF=0.500;MQ=23.19;MQ0=12;MQRankSum=-3.356;QD=4.83;ReadPosRankSum=15.481;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:333,233:571:99:2787,0,2106 chrXIV 6914 . G C 2773.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.722;DP=584;Dels=0.00;FS=27.236;HaplotypeScore=278.4803;MLEAC=1;MLEAF=0.500;MQ=23.24;MQ0=12;MQRankSum=-4.043;QD=4.75;ReadPosRankSum=15.809;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:346,233:584:99:2803,0,2216 chrXIV 6924 . A G 1154.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.939;DP=647;Dels=0.00;FS=1.268;HaplotypeScore=223.2251;MLEAC=1;MLEAF=0.500;MQ=23.22;MQ0=15;MQRankSum=-1.293;QD=1.78;ReadPosRankSum=6.419;SB=-1.480e+02 GT:AD:DP:GQ:PL 0/1:505,142:647:99:1184,0,4391 chrXIV 7005 . C A 690.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;DP=429;Dels=0.00;FS=34.380;HaplotypeScore=101.2526;MLEAC=1;MLEAF=0.500;MQ=23.18;MQ0=48;MQRankSum=2.697;QD=1.61;ReadPosRankSum=7.106;SB=-3.990e+02 GT:AD:DP:GQ:PL 0/1:323,106:429:99:720,0,2936 chrXIV 7010 . T C 859.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.164;DP=390;Dels=0.00;FS=14.139;HaplotypeScore=87.7784;MLEAC=1;MLEAF=0.500;MQ=23.47;MQ0=43;MQRankSum=-0.403;QD=2.20;ReadPosRankSum=6.979;SB=-5.450e+02 GT:AD:DP:GQ:PL 0/1:272,111:390:99:889,0,2595 chrXIV 7041 . T A 472.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.202;DP=181;Dels=0.00;FS=2.096;HaplotypeScore=43.5529;MLEAC=1;MLEAF=0.500;MQ=22.77;MQ0=28;MQRankSum=-1.649;QD=2.61;ReadPosRankSum=-1.664;SB=-3.360e+02 GT:AD:DP:GQ:PL 0/1:68,113:181:99:502,0,739 chrXIV 7047 . C A 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.594;DP=107;Dels=0.00;FS=5.538;HaplotypeScore=25.2328;MLEAC=1;MLEAF=0.500;MQ=20.28;MQ0=20;MQRankSum=-3.040;QD=0.32;ReadPosRankSum=2.198;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,58:107:64:64,0,532 chrXIV 7048 . G T 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.473;DP=90;Dels=0.00;FS=2.124;HaplotypeScore=22.0781;MLEAC=1;MLEAF=0.500;MQ=20.57;MQ0=20;MQRankSum=-3.600;QD=0.12;ReadPosRankSum=6.954;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,41:90:40:40,0,541 chrXIV 7050 . T G 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.394;DP=71;Dels=0.00;FS=1.052;HaplotypeScore=18.1347;MLEAC=1;MLEAF=0.500;MQ=20.64;MQ0=14;MQRankSum=-3.083;QD=0.39;ReadPosRankSum=6.411;SB=-6.516e-03 GT:AD:DP:GQ:PL 0/1:33,36:71:58:58,0,392 chrXIV 7057 . T C 249 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=34.1327;MLEAC=2;MLEAF=1.00;MQ=18.64;MQ0=11;QD=4.79;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:33:282,33,0 chrXIV 7088 . C G 83.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;DP=18;Dels=0.00;FS=29.465;HaplotypeScore=20.2707;MLEAC=1;MLEAF=0.500;MQ=21.27;MQ0=0;MQRankSum=3.355;QD=4.66;ReadPosRankSum=1.501;SB=-6.874e-01 GT:AD:DP:GQ:PL 0/1:9,9:18:4:113,0,4 chrXIV 7115 . C A 214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.075;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=18.3456;MLEAC=2;MLEAF=1.00;MQ=25.62;MQ0=2;MQRankSum=1.281;QD=8.23;ReadPosRankSum=-1.131;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:1,23:26:27:247,27,0 chrXIV 7146 . C T 150.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.267;DP=113;Dels=0.00;FS=68.001;HaplotypeScore=78.5555;MLEAC=1;MLEAF=0.500;MQ=20.83;MQ0=23;MQRankSum=1.274;QD=1.33;ReadPosRankSum=-2.106;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,34:113:99:180,0,700 chrXIV 7155 . C T 402.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.984;DP=135;Dels=0.00;FS=23.649;HaplotypeScore=83.5278;MLEAC=1;MLEAF=0.500;MQ=20.67;MQ0=28;MQRankSum=-3.595;QD=2.98;ReadPosRankSum=-0.903;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:46,89:135:99:432,0,675 chrXIV 7157 . A G 292.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;DP=143;Dels=0.00;FS=6.793;HaplotypeScore=95.1108;MLEAC=1;MLEAF=0.500;MQ=20.95;MQ0=29;MQRankSum=-2.953;QD=2.04;ReadPosRankSum=-2.012;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/1:70,72:143:99:322,0,849 chrXIV 7167 . G T 305.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.066;DP=187;Dels=0.00;FS=75.286;HaplotypeScore=86.9055;MLEAC=1;MLEAF=0.500;MQ=21.36;MQ0=43;MQRankSum=2.164;QD=1.63;ReadPosRankSum=-0.430;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,51:187:99:335,0,1253 chrXIV 7202 . C T 223.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.947;DP=261;Dels=0.00;FS=117.796;HaplotypeScore=38.0245;MLEAC=1;MLEAF=0.500;MQ=21.93;MQ0=52;MQRankSum=4.013;QD=0.85;ReadPosRankSum=-6.255;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:243,18:261:99:253,0,1876 chrXIV 7209 . C G 1889.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.570;DP=263;Dels=0.00;FS=43.517;HaplotypeScore=41.7234;MLEAC=1;MLEAF=0.500;MQ=21.80;MQ0=51;MQRankSum=0.177;QD=7.18;ReadPosRankSum=0.180;SB=-1.148e+03 GT:AD:DP:GQ:PL 0/1:84,178:263:99:1919,0,169 chrXIV 7266 . A G 81.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.494;DP=103;Dels=0.00;FS=29.645;HaplotypeScore=44.2415;MLEAC=1;MLEAF=0.500;MQ=21.15;MQ0=6;MQRankSum=3.081;QD=0.79;ReadPosRankSum=-0.902;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,17:103:99:111,0,623 chrXIV 7278 . T A 291.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;DP=81;Dels=0.00;FS=16.922;HaplotypeScore=36.1475;MLEAC=1;MLEAF=0.500;MQ=20.66;MQ0=4;MQRankSum=2.654;QD=3.59;ReadPosRankSum=-2.821;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:58,23:81:99:321,0,394 chrXIV 7967 . A G 636 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.471;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=20.6070;MLEAC=2;MLEAF=1.00;MQ=16.01;MQ0=100;MQRankSum=-2.767;QD=2.88;ReadPosRankSum=3.718;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:5,216:221:84:669,84,0 chrXIV 7976 . A G 119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=1;MLEAF=0.500;MQ=10.34;MQ0=126;MQRankSum=-1.407;QD=0.54;ReadPosRankSum=2.478;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,124:222:99:149,0,325 chrXIV 8013 . C G 472.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.103;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=1;MLEAF=0.500;MQ=12.35;MQ0=143;MQRankSum=2.227;QD=2.24;ReadPosRankSum=-0.116;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,102:211:99:502,0,114 chrXIV 8027 . A G 635.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.429;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=14.37;MQ0=122;MQRankSum=2.845;QD=3.36;ReadPosRankSum=1.704;SB=0.528 GT:AD:DP:GQ:PL 0/1:31,158:189:37:665,0,37 chrXIV 8054 . T C 1223 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.303;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.10;MQ0=85;MQRankSum=2.488;QD=7.50;ReadPosRankSum=1.672;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:12,149:163:99:1256,118,0 chrXIV 8078 . T G 1942 filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=23.57;MQ0=45;QD=14.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:29,106:138:99:1975,201,0 chrXIV 8088 . G A 1973 filter AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.83;MQ0=42;QD=14.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:35,97:132:99:2006,201,0 chrXIV 8090 . T C 1972 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.54;MQ0=34;QD=16.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:34,89:123:99:2005,201,0 chrXIV 8099 . T G 1650 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.03;MQ0=37;QD=13.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:37,81:118:99:1683,183,0 chrXIV 8100 . G A 1672 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.03;MQ0=37;QD=14.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:37,81:118:99:1705,183,0 chrXIV 8102 . C T 1818 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.83;MQ0=39;QD=15.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:38,81:120:99:1851,183,0 chrXIV 8112 . A G 1689 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.141;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.46;MQ0=42;MQRankSum=1.690;QD=13.62;ReadPosRankSum=1.479;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:43,81:124:99:1722,174,0 chrXIV 8114 . C T 1718 filter AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.37;MQ0=43;QD=13.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:43,82:125:99:1751,171,0 chrXIV 8131 . G A 1031 filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=62;QD=8.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:58,59:117:99:1064,111,0 chrXIV 8147 . T A 686 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.82;MQ0=72;QD=5.86;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:68,49:117:75:719,75,0 chrXIV 8154 . C T 505 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=106;Dels=0.00;FS=14.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.98;MQ0=76;MQRankSum=1.617;QD=4.76;ReadPosRankSum=1.617;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:73,33:106:54:538,54,0 chrXIV 8156 . T C 493 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.040;DP=108;Dels=0.00;FS=14.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.84;MQ0=78;MQRankSum=1.617;QD=4.56;ReadPosRankSum=1.386;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:75,33:108:54:526,54,0 chrXIV 8181 . T G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.905;DP=109;Dels=0.00;FS=53.085;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=8.47;MQ0=88;MQRankSum=3.512;QD=0.22;ReadPosRankSum=0.978;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:95,14:109:6:55,6,0 chrXIV 8754 . A G 425.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.685;DP=125;Dels=0.00;FS=3.535;HaplotypeScore=22.8611;MLEAC=2;MLEAF=1.00;MQ=16.39;MQ0=23;MQRankSum=-2.370;QD=3.40;ReadPosRankSum=2.974;SB=-3.814e+01 GT:AD:DP:GQ:PL 1/1:8,116:125:1:454,1,0 chrXIV 8815 . A C 193.03 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.46;MQ0=12;QD=8.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:24:226,24,0 chrXIV 8818 . T C 191.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.041;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.54;MQ0=16;MQRankSum=1.396;QD=6.82;ReadPosRankSum=2.041;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,26:28:24:224,24,0 chrXIV 8936 . T A 48.97 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=13.31;MQ0=5;QD=1.44;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,34:34:9:81,9,0 chrXIV 8941 . G A 49.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.053;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=13.80;MQ0=5;MQRankSum=-1.313;QD=1.32;ReadPosRankSum=-0.158;SB=2.44 GT:AD:DP:GQ:PL 1/1:1,37:38:9:82,9,0 chrXIV 8958 . T C 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;DP=46;Dels=0.00;FS=12.466;HaplotypeScore=16.7495;MLEAC=1;MLEAF=0.500;MQ=15.76;MQ0=6;MQRankSum=2.002;QD=1.04;ReadPosRankSum=1.698;SB=-9.787e-03 GT:AD:DP:GQ:PL 0/1:21,25:46:28:78,0,28 chrXIV 8965 . G A 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;DP=51;Dels=0.00;FS=47.648;HaplotypeScore=19.2053;MLEAC=1;MLEAF=0.500;MQ=16.82;MQ0=6;MQRankSum=1.801;QD=0.59;ReadPosRankSum=-1.738;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:40,11:51:60:60,0,136 chrXIV 8986 . A G 97.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.826;DP=43;Dels=0.00;FS=40.121;HaplotypeScore=7.2261;MLEAC=1;MLEAF=0.500;MQ=17.80;MQ0=4;MQRankSum=-1.478;QD=2.26;ReadPosRankSum=-0.191;SB=-1.558e+00 GT:AD:DP:GQ:PL 0/1:10,33:43:99:127,0,138 chrXIV 9529 . A T 77.51 filter AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=5.08;MQ0=117;QD=0.59;SB=-2.655e+01 GT:AD:DP:GQ:PL 1/1:51,80:131:12:110,12,0 chrXIV 9608 . C T 50.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.096;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.7762;MLEAC=2;MLEAF=1.00;MQ=9.36;MQ0=31;MQRankSum=-1.918;QD=0.86;ReadPosRankSum=1.383;SB=2.08 GT:AD:DP:GQ:PL 1/1:8,51:59:9:83,9,0 chrXIV 9650 . C T 479 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.55;MQ0=15;QD=6.56;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:4,69:73:51:512,51,0 chrXIV 9655 . A T 490 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.36;MQ0=11;QD=6.53;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:54:523,54,0 chrXIV 9656 . G A 495 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.80;MQ0=11;QD=6.27;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,75:79:54:528,54,0 chrXIV 9662 . G A 644 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=23.70;MQ0=14;QD=6.13;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,100:105:72:677,72,0 chrXIV 9739 . A G 2969 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.691;DP=230;Dels=0.00;FS=212.661;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=20.74;MQ0=94;MQRankSum=6.330;QD=12.91;ReadPosRankSum=2.428;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:85,145:230:99:3002,281,0 chrXIV 9913 . T C 6586.01 filter AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=38.52;MQ0=7;QD=23.11;SB=-3.233e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:6586,685,0 chrXIV 9970 . C T 4208.01 filter AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=35.40;MQ0=19;QD=22.03;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4208,430,0 chrXIV 10004 . C T 1861 filter AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=13.0189;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=42;QD=13.39;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,135:139:99:1894,195,0 chrXIV 10018 . G A 1343 filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.86;MQ0=42;QD=10.92;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1376,147,0 chrXIV 10105 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=166;Dels=0.00;FS=2.501;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=1;MQRankSum=0.834;QD=22.64;ReadPosRankSum=2.957;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:3,162:166:99:3758,394,0 chrXIV 11518 . C T 212.01 filter AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=8.38;MQ0=111;QD=1.66;SB=-5.202e+01 GT:AD:DP:GQ:PL 1/1:67,60:128:27:245,27,0 chrXIV 14055 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.91;MQ0=3;QD=4.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:6:53,6,0 chrXIV 14062 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.91;MQ0=3;QD=4.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,2:5:6:53,6,0 chrXIV 15955 . C T 1159 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.83;MQ0=0;QD=20.70;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1192,120,0 chrXIV 15990 . T C 1738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=3.763;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;MQRankSum=-1.338;QD=19.75;ReadPosRankSum=1.693;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1771,171,0 chrXIV 15992 . G C 1764 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=38.63;MQ0=0;QD=19.17;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1797,180,0 chrXIV 16090 . G A 2333 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=23.10;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2366,246,0 chrXIV 16112 . C A 2160 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=24.83;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2193,216,0 chrXIV 16225 . G T 1991 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=21.41;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2024,207,0 chrXIV 16321 . T C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=170;Dels=0.00;FS=2.843;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=3;MQRankSum=1.809;QD=18.51;ReadPosRankSum=2.405;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:3180,316,0 chrXIV 16385 . T A 1670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=152;Dels=0.00;FS=2.991;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;MQRankSum=0.380;QD=10.99;ReadPosRankSum=2.256;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:2,150:152:99:1703,174,0 chrXIV 16410 . G T 1618 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3609;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=0;QD=12.26;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1651,162,0 chrXIV 16421 . G A 1706 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;QD=13.65;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:1739,177,0 chrXIV 16445 . T C 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=149;Dels=0.00;FS=2.918;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;MQRankSum=-0.751;QD=18.35;ReadPosRankSum=2.384;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2767,282,0 chrXIV 16538 . G A 2821 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.6058;MLEAC=2;MLEAF=1.00;MQ=39.21;MQ0=3;QD=14.10;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:2854,303,0 chrXIV 16550 . G A 2717 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.88;MQ0=2;QD=13.86;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:2750,273,0 chrXIV 16553 . T A 2479 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=2;QD=12.98;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:2512,249,0 chrXIV 16586 . A G 522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=128;Dels=0.00;FS=2.821;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=25.80;MQ0=0;MQRankSum=-2.430;QD=4.08;ReadPosRankSum=2.372;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:2,125:128:60:555,60,0 chrXIV 16595 . C T 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=12.69;MQ0=0;QD=0.25;SB=-2.376e+01 GT:AD:DP:GQ:PL 1/1:0,104:105:6:58,6,0 chrXIV 16636 . C T 725 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=0;QD=10.82;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:81:758,81,0 chrXIV 16637 . G A 751 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=34.94;MQ0=0;QD=11.04;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:81:784,81,0 chrXIV 16643 . A G 738 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.066;DP=77;Dels=0.00;FS=9.438;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=36.28;MQ0=0;MQRankSum=1.777;QD=9.58;ReadPosRankSum=1.461;SB=-6.525e-03 GT:AD:DP:GQ:PL 1/1:3,74:77:62:771,62,0 chrXIV 16664 . A G 1381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.520;DP=101;Dels=0.00;FS=9.120;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=39.06;MQ0=3;MQRankSum=0.990;QD=13.67;ReadPosRankSum=-1.414;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1414,129,0 chrXIV 16724 . G A 1872 filter AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7598;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=9;QD=11.77;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,158:159:99:1905,210,0 chrXIV 16733 . C T 2018 filter AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.4205;MLEAC=2;MLEAF=1.00;MQ=41.53;MQ0=11;QD=13.54;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2051,204,0 chrXIV 16801 . T C 247 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=31.70;MQ0=5;QD=6.33;SB=-1.506e-02 GT:AD:DP:GQ:PL 1/1:0,36:39:30:280,30,0 chrXIV 17165 . C T 81.51 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=21.45;MQ0=4;QD=1.94;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,42:42:12:114,12,0 chrXIV 17207 . T C 893 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=4;MQRankSum=-1.588;QD=13.33;ReadPosRankSum=2.372;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,65:67:96:926,96,0 chrXIV 17244 . G T 1481 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=107.5275;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=4;QD=11.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1514,147,0 chrXIV 17342 . A G 1601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.468;HaplotypeScore=5.9218;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=0;MQRankSum=1.212;QD=13.34;ReadPosRankSum=1.674;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1634,171,0 chrXIV 17370 . T A 1375 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=39.62;MQ0=0;QD=14.63;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1408,138,0 chrXIV 17387 . T C 1057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=74;Dels=0.00;FS=2.801;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.44;MQ0=0;MQRankSum=-0.223;QD=14.28;ReadPosRankSum=2.347;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:2,70:74:99:1090,114,0 chrXIV 17474 . G A 3215 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=23.81;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3248,325,0 chrXIV 17552 . A T 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=0.577;QD=26.71;ReadPosRankSum=1.699;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2838,280,0 chrXIV 17591 . C T 2011 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=19.91;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2044,213,0 chrXIV 17598 . G C 2009 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=18.95;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2042,213,0 chrXIV 17628 . T A 1712 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=18.21;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1745,183,0 chrXIV 17657 . A G 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=4.979;HaplotypeScore=18.5464;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;MQRankSum=-0.243;QD=16.82;ReadPosRankSum=1.635;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1833,192,0 chrXIV 17773 . T C 2148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=12.6671;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-1.343;QD=21.70;ReadPosRankSum=1.697;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2181,225,0 chrXIV 17835 . A G 3113 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=24.71;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3146,313,0 chrXIV 17899 . C A 3646.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=25.68;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3646,361,0 chrXIV 17924 . G A 3928.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=26.90;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3928,394,0 chrXIV 18046 . T C 4916.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.6132;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.60;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4916,496,0 chrXIV 18355 . T C 4078.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.8036;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.712;QD=23.99;ReadPosRankSum=1.671;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4078,409,0 chrXIV 18574 . G A 5910.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.4174;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=27.36;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5910,598,0 chrXIV 18787 . C T 4987.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4987,487,0 chrXIV 18838 . C T 3679.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.9118;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.05;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3679,376,0 chrXIV 19036 . A G 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=4.572;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.895;QD=23.37;ReadPosRankSum=1.662;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3506,375,0 chrXIV 19321 . G A 3107 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=18.95;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3140,313,0 chrXIV 19440 . A G 4244.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=25.26;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4244,442,0 chrXIV 19517 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=21.33;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2827,286,0 chrXIV 19520 . T A 2824 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=21.39;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2857,283,0 chrXIV 19703 . A G 4299.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=23.75;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4299,433,0 chrXIV 19713 . C T 4387.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=22.61;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4387,436,0 chrXIV 19742 . T C 4197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=190;Dels=0.00;FS=10.133;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=-1.243;QD=22.09;ReadPosRankSum=2.552;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:3,183:190:99:4197,436,0 chrXIV 19886 . A C 4123.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=25.14;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4123,418,0 chrXIV 19934 . G A 3900.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=22.41;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3900,406,0 chrXIV 19955 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=17.11;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3267,331,0 chrXIV 19960 . G T 3372.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.1925;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=16.69;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3372,340,0 chrXIV 20018 . A G 4296.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=5.0878;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.53;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4296,454,0 chrXIV 20045 . A C 3887.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.72;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3887,406,0 chrXIV 20114 . A G 2625 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.44;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2658,273,0 chrXIV 20228 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.27;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3722,385,0 chrXIV 20303 . A T 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=120;Dels=0.00;FS=3.632;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.010;QD=25.24;ReadPosRankSum=1.617;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3062,301,0 chrXIV 20559 . C T 4082.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.87;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4082,418,0 chrXIV 20711 . A G 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=1.329;QD=24.55;ReadPosRankSum=1.712;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4271,439,0 chrXIV 20915 . G A 3964.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.8658;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=25.09;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3964,394,0 chrXIV 20936 . G T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.4613;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.67;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4334,445,0 chrXIV 21206 . G A 5077.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=16.8340;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.72;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5077,511,0 chrXIV 21401 . G A 3756.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.55;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3756,391,0 chrXIV 21526 . C G 2945 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2978,312,0 chrXIV 21612 . T C 2626 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.01;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2659,267,0 chrXIV 21635 . T G 2760 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.59;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2793,300,0 chrXIV 21701 . T C 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=146;Dels=0.00;FS=2.588;HaplotypeScore=9.4186;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.229;QD=24.41;ReadPosRankSum=2.896;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:3,142:146:99:3564,361,0 chrXIV 21836 . A C 4135.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.76;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4135,430,0 chrXIV 21949 . T C 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=3.630;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=0.210;QD=20.57;ReadPosRankSum=1.672;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3599,378,0 chrXIV 21953 . A G 3675.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=21.12;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3675,379,0 chrXIV 21965 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=164;Dels=0.00;FS=2.911;HaplotypeScore=3.5184;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=-0.322;QD=20.90;ReadPosRankSum=2.420;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3427,340,0 chrXIV 22021 . T C 3776.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.95;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3776,385,0 chrXIV 22090 . C T 3733.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.7289;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3733,390,0 chrXIV 22825 . A G 3054 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.9747;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.46;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3087,324,0 chrXIV 22855 . A G 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=137;Dels=0.00;FS=7.084;HaplotypeScore=11.0766;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.446;QD=22.09;ReadPosRankSum=2.395;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:2,133:137:99:3060,321,0 chrXIV 22918 . G A 3887.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.21;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3887,397,0 chrXIV 23134 . C G 3415.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.89;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3415,360,0 chrXIV 23219 . T C 4442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=0.287;QD=23.75;ReadPosRankSum=1.695;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4442,448,0 chrXIV 23229 . G C 4274.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.8061;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=22.49;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4274,442,0 chrXIV 23318 . G A 4136.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=24.77;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4136,412,0 chrXIV 23451 . C T 4349.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=24.16;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4349,436,0 chrXIV 23459 . G A 3993.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=23.91;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3993,397,0 chrXIV 23495 . G A 3195 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=11.9741;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=21.30;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3228,333,0 chrXIV 23592 . C T 3447.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=20.64;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3447,349,0 chrXIV 23613 . C T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.7196;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.30;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3613,358,0 chrXIV 23762 . A T 3873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=3.625;HaplotypeScore=10.2234;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;MQRankSum=1.449;QD=24.21;ReadPosRankSum=1.667;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3873,397,0 chrXIV 23884 . T C 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=4.341;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.529;QD=23.98;ReadPosRankSum=1.636;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3453,346,0 chrXIV 23905 . T A 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=158;Dels=0.00;FS=16.803;HaplotypeScore=6.7252;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.614;QD=20.94;ReadPosRankSum=2.872;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:4,154:158:99:3308,303,0 chrXIV 24043 . C T 2491 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;QD=21.11;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2524,249,0 chrXIV 24081 . A T 3935.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.6659;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=23.99;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3935,403,0 chrXIV 24221 . T C 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=141;Dels=0.00;FS=2.934;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=0.606;QD=24.70;ReadPosRankSum=2.362;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3482,355,0 chrXIV 24263 . T A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=23.89;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3392,337,0 chrXIV 24285 . G A 2961 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=20.56;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2994,303,0 chrXIV 24290 . C T 2943 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=20.16;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2976,295,0 chrXIV 24336 . C T 3329.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.1743;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=20.81;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3329,331,0 chrXIV 24346 . C T 3133 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.1585;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=20.75;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3166,319,0 chrXIV 24416 . T C 3546.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.88;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3546,364,0 chrXIV 24467 . C T 4331.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=22.6934;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.80;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4331,436,0 chrXIV 24509 . T A 4795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.354;QD=25.78;ReadPosRankSum=1.695;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4795,496,0 chrXIV 24575 . T C 4074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=179;Dels=0.00;FS=2.974;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.840;QD=22.76;ReadPosRankSum=2.394;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:2,175:179:99:4074,432,0 chrXIV 24616 . G T 3731.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.47;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,154:159:99:3731,376,0 chrXIV 24641 . G A 4064.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.22;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4064,403,0 chrXIV 24809 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=165;Dels=0.00;FS=2.928;HaplotypeScore=12.1462;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.715;QD=24.36;ReadPosRankSum=2.420;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:4020,409,0 chrXIV 24857 . G T 4529.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=24.22;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4529,457,0 chrXIV 24910 . G A 4574.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=24.07;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4574,457,0 chrXIV 25123 . T C 4191.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;QD=20.34;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4191,427,0 chrXIV 25137 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.34;MQ0=0;MQRankSum=-1.230;QD=18.27;ReadPosRankSum=0.866;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:3654,390,0 chrXIV 25142 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=197;Dels=0.00;FS=9.906;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=38.94;MQ0=0;MQRankSum=-1.385;QD=18.01;ReadPosRankSum=2.425;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:3547,369,0 chrXIV 25157 . G A 2947 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.3816;MLEAC=2;MLEAF=1.00;MQ=39.04;MQ0=0;QD=16.65;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:2980,306,0 chrXIV 25167 . A T 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.5293;MLEAC=2;MLEAF=1.00;MQ=40.39;MQ0=0;MQRankSum=1.027;QD=16.61;ReadPosRankSum=2.392;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:2873,291,0 chrXIV 25197 . A G 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;MQRankSum=-0.019;QD=17.13;ReadPosRankSum=1.713;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3185,330,0 chrXIV 25340 . C T 4564.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.53;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4564,466,0 chrXIV 25369 . T C 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.411;DP=179;Dels=0.00;FS=5.111;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=-0.561;QD=20.28;ReadPosRankSum=3.372;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:4,175:179:99:3631,373,0 chrXIV 25389 . A G 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=210;Dels=0.00;FS=10.934;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;MQRankSum=0.836;QD=17.57;ReadPosRankSum=2.368;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:3689,393,0 chrXIV 25410 . A C 3974.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;QD=15.96;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:3974,423,0 chrXIV 25427 . A G 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=274;Dels=0.00;FS=10.106;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.16;MQ0=0;MQRankSum=1.951;QD=13.89;ReadPosRankSum=2.413;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:2,269:274:99:3805,396,0 chrXIV 25436 . C T 4281.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=13.3386;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=14.71;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,291:291:99:4281,445,0 chrXIV 25528 . T C 4908.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=19.1344;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.72;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:4908,502,0 chrXIV 25651 . T C 4379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=265;Dels=0.00;FS=5.715;HaplotypeScore=13.5462;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=-1.493;QD=16.52;ReadPosRankSum=1.679;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:1,260:265:99:4379,460,0 chrXIV 25739 . G T 4707.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.52;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4707,472,0 chrXIV 25764 . G T 4552.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.34;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4552,451,0 chrXIV 25800 . C T 4315.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.58;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4315,433,0 chrXIV 25936 . C T 6816.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=13.1491;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.92;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:6816,682,0 chrXIV 26041 . A T 6608.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=24.5727;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.21;SB=-3.779e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:6608,652,0 chrXIV 26085 . T C 7575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=318;Dels=0.00;FS=9.324;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-1.111;QD=23.82;ReadPosRankSum=2.895;SB=-4.379e+03 GT:AD:DP:GQ:PL 1/1:3,313:318:99:7575,763,0 chrXIV 26102 . C T 7426.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=8.9972;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.92;SB=-4.272e+03 GT:AD:DP:GQ:PL 1/1:0,323:324:99:7426,763,0 chrXIV 26378 . T C 5952.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=11.5487;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.80;SB=-2.985e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5952,619,0 chrXIV 26408 . G A 6213.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.65;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:6213,634,0 chrXIV 26480 . C T 6372.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=16.7056;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.23;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:0,260:263:99:6372,649,0 chrXIV 26572 . G A 6190.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=17.6482;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=26.34;SB=-3.320e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:6190,610,0 chrXIV 26624 . C T 5436.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.2480;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=25.76;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5436,559,0 chrXIV 26669 . A G 3050 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=22.10;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3083,324,0 chrXIV 26675 . T C 2638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=0.406;QD=20.45;ReadPosRankSum=1.543;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2671,282,0 chrXIV 26681 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.1732;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=19.32;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2622,273,0 chrXIV 26744 . G T 4785.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.492;DP=286;Dels=0.00;FS=4.523;HaplotypeScore=15.8058;MLEAC=1;MLEAF=0.500;MQ=57.56;MQ0=0;MQRankSum=0.590;QD=16.73;ReadPosRankSum=6.093;SB=-2.717e+03 GT:AD:DP:GQ:PL 0/1:51,235:286:99:4785,0,436 chrXIV 26783 . G A 4798.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.402;DP=346;Dels=0.00;FS=6.220;HaplotypeScore=19.2733;MLEAC=1;MLEAF=0.500;MQ=56.81;MQ0=0;MQRankSum=-2.019;QD=13.87;ReadPosRankSum=-7.020;SB=-2.647e+03 GT:AD:DP:GQ:PL 0/1:103,241:346:99:4798,0,1660 chrXIV 26789 . T C 1626.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;DP=353;Dels=0.00;FS=6.126;HaplotypeScore=26.6602;MLEAC=1;MLEAF=0.500;MQ=56.87;MQ0=0;MQRankSum=1.635;QD=4.61;ReadPosRankSum=7.615;SB=-7.400e+02 GT:AD:DP:GQ:PL 0/1:247,105:353:99:1656,0,4859 chrXIV 26953 . T C 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=3.815;HaplotypeScore=13.0079;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.613;QD=23.62;ReadPosRankSum=1.714;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4653,469,0 chrXIV 27283 . T C 1046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.767;QD=20.92;ReadPosRankSum=2.352;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:99:1079,111,0 chrXIV 27309 . G T 1380 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.29;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1413,144,0 chrXIV 27328 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=19.75;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1712,171,0 chrXIV 27347 . T C 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-0.884;QD=17.04;ReadPosRankSum=2.305;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1481,153,0 chrXIV 27364 . C A 1560 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=18.35;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1593,156,0 chrXIV 27622 . T C 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.8998;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.924;QD=21.46;ReadPosRankSum=1.711;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,163:167:99:3584,372,0 chrXIV 27635 . T A 4043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.145;QD=22.59;ReadPosRankSum=1.635;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4043,403,0 chrXIV 27814 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.140;QD=22.71;ReadPosRankSum=1.709;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3452,352,0 chrXIV 27917 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2451;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=26.08;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3808,382,0 chrXIV 28026 . C T 3510.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.00;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3510,343,0 chrXIV 28085 . T G 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=3.037;HaplotypeScore=8.0955;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.173;QD=24.51;ReadPosRankSum=2.413;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3333,348,0 chrXIV 28335 . G A 3021 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=23.06;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3054,307,0 chrXIV 28353 . A G 2668 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.87;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2701,273,0 chrXIV 28602 . T A 1819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=83;Dels=0.00;FS=4.877;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=0.897;QD=21.92;ReadPosRankSum=1.565;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1852,180,0 chrXIV 28617 . T C 1925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=9.233;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;MQRankSum=1.648;QD=22.92;ReadPosRankSum=2.391;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1958,195,0 chrXIV 28660 . A G 1508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.39;MQ0=0;MQRankSum=-1.215;QD=17.33;ReadPosRankSum=1.692;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1541,159,0 chrXIV 28675 . T A 1269 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.403;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.32;MQ0=0;MQRankSum=0.663;QD=15.67;ReadPosRankSum=1.689;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1302,135,0 chrXIV 28680 . A T 1232 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=0;MQRankSum=-1.732;QD=15.79;ReadPosRankSum=1.688;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1265,132,0 chrXIV 28682 . C A 1230 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;QD=15.57;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1263,129,0 chrXIV 28686 . T C 1310 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.48;MQ0=0;QD=16.37;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1343,135,0 chrXIV 28703 . C A 1095 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=15.21;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1128,117,0 chrXIV 28799 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=25.75;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3760,388,0 chrXIV 28847 . A G 4219.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=26.37;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4219,442,0 chrXIV 29291 . C A 4534.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=25.47;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4534,460,0 chrXIV 29320 . A C 5036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.1816;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.684;QD=24.57;ReadPosRankSum=1.698;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:5036,517,0 chrXIV 29515 . C T 3793.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.01;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,154:158:99:3793,393,0 chrXIV 29547 . A G 4025.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=24.69;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4025,406,0 chrXIV 29555 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=22.68;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3742,370,0 chrXIV 29633 . T C 3405.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.32;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3405,340,0 chrXIV 29975 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.107;QD=21.32;ReadPosRankSum=1.689;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3496,364,0 chrXIV 29984 . A G 3540.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.3368;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.33;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3540,364,0 chrXIV 30413 . C T 4722.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.3194;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.23;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4722,469,0 chrXIV 30527 . A T 4953.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.2686;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.27;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4953,490,0 chrXIV 30578 . G A 5246.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.04;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5246,514,0 chrXIV 30802 . G T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.99;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3623,361,0 chrXIV 30933 . T C 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=162;Dels=0.00;FS=9.113;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.775;QD=24.28;ReadPosRankSum=3.338;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:4,155:162:99:3933,397,0 chrXIV 31190 . T C 5263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.3837;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=0.862;QD=25.43;ReadPosRankSum=1.682;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:5263,538,0 chrXIV 31429 . T C 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=153;Dels=0.00;FS=6.990;HaplotypeScore=9.7387;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=0.924;QD=21.03;ReadPosRankSum=1.709;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,149:153:99:3251,337,0 chrXIV 31443 . T C 3395.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=21.09;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3395,352,0 chrXIV 31516 . G T 2096 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=33.80;MQ0=0;QD=15.08;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,135:139:99:2129,222,0 chrXIV 31519 . C T 2293 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=31.19;MQ0=0;QD=17.64;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2326,234,0 chrXIV 31526 . A G 2079 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.769;DP=120;Dels=0.00;FS=2.318;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;MQRankSum=-3.756;QD=17.32;ReadPosRankSum=3.769;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:5,115:120:99:2112,228,0 chrXIV 31527 . C A 2153 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=18.72;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2186,228,0 chrXIV 31542 . A G 1569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.991;DP=108;Dels=0.00;FS=2.763;HaplotypeScore=423.3306;MLEAC=2;MLEAF=1.00;MQ=27.42;MQ0=0;MQRankSum=1.834;QD=14.53;ReadPosRankSum=2.404;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:1602,174,0 chrXIV 31657 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6688;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=22.10;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2906,309,0 chrXIV 31666 . T C 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;MQRankSum=-1.063;QD=20.82;ReadPosRankSum=2.315;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2323,240,0 chrXIV 31693 . T C 1245 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=14.82;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1278,135,0 chrXIV 31702 . A G 965 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.22;MQ0=0;QD=13.22;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:998,108,0 chrXIV 31722 . A T 960 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=36.00;MQ0=0;QD=12.97;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:993,114,0 chrXIV 31748 . T C 2019 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=18.69;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2052,219,0 chrXIV 31770 . C T 2911 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;QD=20.22;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2944,303,0 chrXIV 31774 . C T 3099 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=20.25;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3132,315,0 chrXIV 31994 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=24.23;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3207,325,0 chrXIV 32015 . A G 3081 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=22.49;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3114,310,0 chrXIV 32285 . A G 4164.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.13;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4164,444,0 chrXIV 32330 . A C 4369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.675;QD=24.01;ReadPosRankSum=1.713;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4369,451,0 chrXIV 33086 . A G 1372 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1405,144,0 chrXIV 33272 . G A 712 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=26.37;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:78:745,78,0 chrXIV 33359 . G A 3395.01 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.7131;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=29.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3395,334,0 chrXIV 33540 . A G 9038.01 PASS AC=2;AF=1.00;AN=2;DP=356;Dels=0.00;FS=0.000;HaplotypeScore=18.8901;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.39;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,353:356:99:9038,940,0 chrXIV 33602 . T C 8673.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=21.3571;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.038;QD=23.96;ReadPosRankSum=1.722;SB=-3.870e+03 GT:AD:DP:GQ:PL 1/1:1,359:362:99:8673,904,0 chrXIV 33651 . T C 8212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=357;Dels=0.00;FS=0.000;HaplotypeScore=22.1684;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.037;QD=23.00;ReadPosRankSum=1.722;SB=-4.754e+03 GT:AD:DP:GQ:PL 1/1:1,354:357:99:8212,838,0 chrXIV 33735 . G C 10424.01 filter AC=2;AF=1.00;AN=2;DP=480;Dels=0.00;FS=0.000;HaplotypeScore=32.0465;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.72;SB=-5.961e+03 GT:AD:DP:GQ:PL 1/1:0,472:480:99:10424,1084,0 chrXIV 33946 . G C 9188.01 filter AC=2;AF=1.00;AN=2;DP=393;Dels=0.00;FS=0.000;HaplotypeScore=39.3163;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.38;SB=-4.882e+03 GT:AD:DP:GQ:PL 1/1:0,391:393:99:9188,938,0 chrXIV 34054 . G A 7146.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=19.5664;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.99;SB=-3.479e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:7146,703,0 chrXIV 34134 . C T 5097.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=6.5566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5097,532,0 chrXIV 34193 . G A 4305.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=22.6458;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.30;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4305,424,0 chrXIV 34497 . G A 582 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.38;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,25:26:63:615,63,0 chrXIV 34590 . G A 1669 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=28.29;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1702,165,0 chrXIV 34650 . T A 1580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.751;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=-0.341;QD=15.49;ReadPosRankSum=3.689;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:5,97:102:99:1613,168,0 chrXIV 34651 . A G 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-0.579;QD=15.93;ReadPosRankSum=2.154;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1626,171,0 chrXIV 34842 . C G 6660.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=25.1404;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=25.42;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,259:262:99:6660,673,0 chrXIV 35550 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.2374;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3633,370,0 chrXIV 35786 . C T 4037.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.7425;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.18;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,177:182:99:4037,415,0 chrXIV 36225 . T C 4331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.720;DP=198;Dels=0.00;FS=6.060;HaplotypeScore=12.6398;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.138;QD=21.87;ReadPosRankSum=2.924;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:4331,454,0 chrXIV 36273 . A G 4916.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=25.47;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4916,508,0 chrXIV 36441 . G A 4546.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.31;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4546,466,0 chrXIV 36607 . A G 5035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=213;Dels=0.00;FS=4.472;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.907;QD=23.64;ReadPosRankSum=1.699;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,209:213:99:5035,526,0 chrXIV 36738 . T C 4765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=248;Dels=0.00;FS=6.545;HaplotypeScore=7.9591;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.411;QD=19.21;ReadPosRankSum=2.400;SB=-3.170e+03 GT:AD:DP:GQ:PL 1/1:2,246:248:99:4765,484,0 chrXIV 36744 . T C 4481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=245;Dels=0.00;FS=9.984;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=1.378;QD=18.29;ReadPosRankSum=2.954;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:3,239:245:99:4481,469,0 chrXIV 36849 . T A 6995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=294;Dels=0.00;FS=6.813;HaplotypeScore=17.6263;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.532;QD=23.79;ReadPosRankSum=2.399;SB=-3.651e+03 GT:AD:DP:GQ:PL 1/1:2,291:294:99:6995,715,0 chrXIV 37063 . A G 5006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.7466;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.914;QD=23.18;ReadPosRankSum=1.684;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:5006,508,0 chrXIV 37484 . G C 2011 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.31;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2044,207,0 chrXIV 37492 . T A 1875 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=20.38;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1908,198,0 chrXIV 37528 . A G 2229 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.43;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2262,237,0 chrXIV 37676 . A G 3443.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.95;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3443,360,0 chrXIV 37855 . C T 5357.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.70;SB=-3.162e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5357,529,0 chrXIV 37986 . T C 4950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=215;Dels=0.00;FS=4.113;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.987;QD=23.02;ReadPosRankSum=1.716;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4950,511,0 chrXIV 38125 . G A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.59;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3562,361,0 chrXIV 38446 . G C 2258 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2291,237,0 chrXIV 38764 . A T 3686.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=26.71;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3686,367,0 chrXIV 38784 . T C 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.272;QD=24.51;ReadPosRankSum=2.412;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3244,325,0 chrXIV 38851 . T C 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.544;QD=25.95;ReadPosRankSum=1.666;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2758,285,0 chrXIV 38880 . A G 2922 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.81;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2955,298,0 chrXIV 39122 . T C 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=3.194;HaplotypeScore=6.7148;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.616;QD=24.98;ReadPosRankSum=1.675;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3055,315,0 chrXIV 39235 . C A 1843 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1876,186,0 chrXIV 39282 . C T 2659 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2692,268,0 chrXIV 39538 . A G 3348.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.80;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3348,346,0 chrXIV 39847 . G T 3957.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.13;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3957,397,0 chrXIV 40035 . T G 4334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=174;Dels=0.00;FS=3.190;HaplotypeScore=18.2783;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.312;QD=24.91;ReadPosRankSum=1.712;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4334,445,0 chrXIV 40397 . A G 1903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.552;QD=19.62;ReadPosRankSum=2.928;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:3,94:97:99:1936,201,0 chrXIV 40439 . G A 1720 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.11;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1753,177,0 chrXIV 40607 . C A 2884 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=24.65;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2917,297,0 chrXIV 40627 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=23.72;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3116,304,0 chrXIV 40663 . T C 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.228;QD=23.41;ReadPosRankSum=1.678;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3053,312,0 chrXIV 40774 . C T 4536.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.34;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4536,442,0 chrXIV 40852 . A C 5506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=230;Dels=0.00;FS=2.121;HaplotypeScore=15.4305;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=2.079;QD=23.94;ReadPosRankSum=2.925;SB=-3.065e+03 GT:AD:DP:GQ:PL 1/1:3,225:230:99:5506,552,0 chrXIV 40912 . C T 4151.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.45;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4151,430,0 chrXIV 40918 . A G 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=202;Dels=0.00;FS=3.609;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.892;QD=20.08;ReadPosRankSum=1.646;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4056,412,0 chrXIV 41218 . C T 4394.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.6295;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.69;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:4394,433,0 chrXIV 41680 . C T 4831.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.70;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4831,484,0 chrXIV 42031 . G A 2416 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.92;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2449,243,0 chrXIV 42185 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.92;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1731,177,0 chrXIV 42341 . G A 4615.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=26.83;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4615,457,0 chrXIV 42360 . A G 3869.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.0991;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=24.96;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3869,406,0 chrXIV 42589 . A C 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=175;Dels=0.00;FS=2.916;HaplotypeScore=6.7708;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=-0.204;QD=19.04;ReadPosRankSum=2.337;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3332,343,0 chrXIV 42594 . A T 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=168;Dels=0.00;FS=2.986;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=0.080;QD=17.61;ReadPosRankSum=2.391;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:2992,298,0 chrXIV 42629 . C G 3601.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.94;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3601,364,0 chrXIV 42682 . C T 4700.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.7237;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.86;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4700,463,0 chrXIV 42739 . G T 4486.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.49;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4486,463,0 chrXIV 42770 . T C 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.7176;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.712;QD=21.99;ReadPosRankSum=1.630;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3739,385,0 chrXIV 42819 . A G 3391.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.55;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3391,366,0 chrXIV 43099 . A T 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;MQRankSum=-0.661;QD=22.34;ReadPosRankSum=1.669;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2490,255,0 chrXIV 43100 . T C 2412 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=21.93;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2445,258,0 chrXIV 43141 . G A 1726 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=19.39;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1759,177,0 chrXIV 43155 . T C 1242 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=18.82;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1275,135,0 chrXIV 43156 . C G 1270 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=19.54;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1303,135,0 chrXIV 43311 . A G 913 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.27;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,39:41:96:946,96,0 chrXIV 43402 . C T 2412 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.80;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2445,243,0 chrXIV 43576 . G A 6344.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=17.4551;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=27.11;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:6344,631,0 chrXIV 43810 . A G 5185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.277;DP=220;Dels=0.00;FS=4.934;HaplotypeScore=18.7454;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.291;QD=23.57;ReadPosRankSum=3.365;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:4,216:220:99:5185,532,0 chrXIV 44216 . A G 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=3.979;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.266;QD=25.65;ReadPosRankSum=1.679;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3335,340,0 chrXIV 44256 . C T 3404.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.59;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3404,343,0 chrXIV 44605 . A G 5503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=14.5988;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.249;QD=21.92;ReadPosRankSum=2.410;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:2,249:251:99:5503,574,0 chrXIV 44718 . G A 5054.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.2732;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.69;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5054,514,0 chrXIV 44734 . C T 4425.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.9905;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=21.59;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4425,451,0 chrXIV 44757 . T C 4013.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.3725;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.23;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4013,421,0 chrXIV 45224 . T C 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=169;Dels=0.00;FS=2.991;HaplotypeScore=16.9448;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.978;QD=23.51;ReadPosRankSum=2.361;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:2,165:169:99:3973,406,0 chrXIV 45374 . T C 4729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.7103;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.961;QD=26.72;ReadPosRankSum=2.422;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:4729,481,0 chrXIV 45407 . T C 4016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.0797;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.882;QD=25.10;ReadPosRankSum=1.710;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:4016,403,0 chrXIV 45479 . G T 4796.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.51;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4796,478,0 chrXIV 45497 . A G 5013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.968;DP=221;Dels=0.00;FS=5.992;HaplotypeScore=10.0086;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-0.424;QD=22.68;ReadPosRankSum=2.894;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:3,215:221:99:5013,520,0 chrXIV 45566 . A G 4719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=211;Dels=0.00;FS=2.890;HaplotypeScore=14.1161;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.871;QD=22.36;ReadPosRankSum=2.403;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:2,208:211:99:4719,487,0 chrXIV 45634 . G A 4068.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.93;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4068,400,0 chrXIV 46130 . C T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=27.06;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3842,373,0 chrXIV 46179 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=25.10;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3070,315,0 chrXIV 46184 . A G 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=1.045;QD=24.66;ReadPosRankSum=1.705;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3140,325,0 chrXIV 46217 . A G 2549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.5933;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.281;QD=21.60;ReadPosRankSum=1.673;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2582,270,0 chrXIV 46343 . A T 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=132;Dels=0.00;FS=3.144;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.496;QD=22.62;ReadPosRankSum=1.575;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3019,315,0 chrXIV 46554 . C T 3480.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.17;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3480,349,0 chrXIV 46706 . G C 5586.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.28;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:5586,574,0 chrXIV 47216 . G A 5049.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.1377;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.25;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:5049,499,0 chrXIV 47277 . C T 5190.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.1907;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.95;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5190,526,0 chrXIV 47307 . C T 5477.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.83;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5477,544,0 chrXIV 47497 . T C 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=190;Dels=0.00;FS=4.037;HaplotypeScore=8.8948;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.477;QD=24.07;ReadPosRankSum=1.677;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4574,466,0 chrXIV 47572 . A T 4869.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.72;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4869,490,0 chrXIV 47627 . G A 4398.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2625;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=26.34;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4398,439,0 chrXIV 47695 . T C 3394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=147;Dels=0.00;FS=3.040;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-0.092;QD=23.09;ReadPosRankSum=2.349;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3394,340,0 chrXIV 47714 . G T 3334.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.38;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3334,340,0 chrXIV 47746 . G A 4356.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.80;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4356,436,0 chrXIV 48004 . C T 4551.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.42;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4551,460,0 chrXIV 48057 . C T 4671.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.08;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4671,481,0 chrXIV 48279 . T A 5412.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=26.27;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5412,532,0 chrXIV 48310 . G T 4878.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.5877;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=24.76;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4878,487,0 chrXIV 48338 . T C 4213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=192;Dels=0.00;FS=3.316;HaplotypeScore=9.0005;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=-0.227;QD=21.94;ReadPosRankSum=1.714;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4213,424,0 chrXIV 48348 . T C 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=209;Dels=0.00;FS=12.339;HaplotypeScore=7.2991;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=-0.147;QD=18.68;ReadPosRankSum=1.741;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:4,204:209:99:3905,396,0 chrXIV 48383 . G C 3814.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=18.70;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,199:204:99:3814,396,0 chrXIV 48399 . C T 4000.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=19.70;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4000,403,0 chrXIV 48463 . C T 4199.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.85;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4199,421,0 chrXIV 48880 . A G 4360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-1.519;QD=18.96;ReadPosRankSum=1.641;SB=-3.160e+03 GT:AD:DP:GQ:PL 1/1:1,227:230:99:4360,442,0 chrXIV 48883 . G A 4227.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.3415;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=18.96;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4227,433,0 chrXIV 48964 . C T 4618.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=24.5881;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.64;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4618,475,0 chrXIV 49325 . G A 3500.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.93;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3500,340,0 chrXIV 49610 . A G 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.614;QD=23.45;ReadPosRankSum=1.703;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2777,288,0 chrXIV 49709 . C T 3466.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3466,349,0 chrXIV 49776 . A C 4598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.228;QD=25.98;ReadPosRankSum=1.613;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:4598,453,0 chrXIV 50094 . T G 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.436;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.547;QD=25.29;ReadPosRankSum=1.709;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3819,391,0 chrXIV 50288 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.33;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3648,361,0 chrXIV 50444 . A G 3941.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.39;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3941,412,0 chrXIV 50452 . G A 4195.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=23.70;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4195,415,0 chrXIV 50576 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.349;DP=161;Dels=0.00;FS=8.964;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.643;QD=22.95;ReadPosRankSum=3.349;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:4,155:161:99:3695,379,0 chrXIV 50593 . G A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.92;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3354,334,0 chrXIV 50736 . A G 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.822;QD=21.72;ReadPosRankSum=1.707;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3030,310,0 chrXIV 50744 . T C 3022 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=23.25;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3055,315,0 chrXIV 50927 . G A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.33;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3291,328,0 chrXIV 51041 . G A 2335 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.62;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2368,234,0 chrXIV 51050 . C A 2106 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.68;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2139,216,0 chrXIV 51266 . C T 4421.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=27.63;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4421,430,0 chrXIV 51825 . A G 4999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=203;Dels=0.00;FS=3.076;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-0.888;QD=24.63;ReadPosRankSum=1.698;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4999,514,0 chrXIV 52243 . C T 5587.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.1556;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.29;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5587,559,0 chrXIV 52659 . G T 4508.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4508,454,0 chrXIV 52985 . C T 4476.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4476,460,0 chrXIV 55368 . C T 4613.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.77;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4613,460,0 chrXIV 58317 . T C 6514.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=16.1867;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.27;SB=-3.102e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:6514,655,0 chrXIV 60029 . T C 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.417;QD=26.60;ReadPosRankSum=1.708;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3830,382,0 chrXIV 60667 . C T 6749.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=11.3877;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.02;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,279:281:99:6749,694,0 chrXIV 61469 . C T 3075 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.4225;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.35;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3108,304,0 chrXIV 61822 . G A 782 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:81:815,81,0 chrXIV 62535 . T A 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=139;Dels=0.00;FS=3.235;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.860;QD=22.47;ReadPosRankSum=1.707;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3157,330,0 chrXIV 63207 . T G 4108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.356;QD=22.45;ReadPosRankSum=2.369;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4108,418,0 chrXIV 63403 . C T 2091 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=16.08;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2124,213,0 chrXIV 63806 . C A 6824.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.64;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:6824,688,0 chrXIV 64081 . G A 3968.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=20.5078;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.94;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3968,406,0 chrXIV 64617 . C T 2030 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.76;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2063,207,0 chrXIV 64664 . A G 1886 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.49;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1919,204,0 chrXIV 64820 . C A 2080 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=26.00;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:2113,207,0 chrXIV 64966 . G A 3416.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.0782;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.75;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3416,346,0 chrXIV 65061 . T C 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.8742;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=1.261;QD=24.42;ReadPosRankSum=1.704;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3086,316,0 chrXIV 65101 . C G 3501.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.44;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3501,352,0 chrXIV 65107 . C T 3486.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.20;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3486,355,0 chrXIV 65258 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.78;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3964,400,0 chrXIV 65294 . A G 5145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=211;Dels=0.00;FS=4.052;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.354;QD=24.38;ReadPosRankSum=1.716;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:5145,532,0 chrXIV 65331 . C T 4739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.2998;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.906;QD=24.30;ReadPosRankSum=1.140;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4739,496,0 chrXIV 65647 . A T 4139.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.35;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4139,421,0 chrXIV 65773 . T G 5856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=17.4312;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.030;QD=25.46;ReadPosRankSum=1.702;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5856,610,0 chrXIV 65938 . T C 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.317;DP=222;Dels=0.00;FS=15.622;HaplotypeScore=15.6183;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.307;QD=17.10;ReadPosRankSum=3.301;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:4,215:222:99:3797,394,0 chrXIV 66215 . C T 3912.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.40;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3912,382,0 chrXIV 66304 . C T 3460.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.9810;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.03;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3460,349,0 chrXIV 66654 . T C 4742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.740;QD=23.71;ReadPosRankSum=1.715;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4742,502,0 chrXIV 66973 . G A 4491.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.7924;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4491,451,0 chrXIV 67383 . C T 3822.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.3401;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=26.54;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3822,385,0 chrXIV 68188 . C G 2995 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4418;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.40;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:3028,318,0 chrXIV 69768 . A T 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=4.555;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.392;QD=24.64;ReadPosRankSum=1.631;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3376,340,0 chrXIV 69822 . C G 3990.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=15.2366;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.48;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3990,423,0 chrXIV 71784 . G A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=27.75;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:3275,319,0 chrXIV 77017 . A T 7621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=16.8701;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.229;QD=23.97;ReadPosRankSum=1.699;SB=-3.977e+03 GT:AD:DP:GQ:PL 1/1:1,317:318:99:7621,775,0 chrXIV 77525 . A G 4314.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=25.99;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4314,448,0 chrXIV 77611 . T C 4267.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.70;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4267,442,0 chrXIV 80433 . C G 3667.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.7626;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.22;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,160:165:99:3667,379,0 chrXIV 82802 . G A 4141.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.5762;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.24;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:4141,409,0 chrXIV 85056 . A G 4852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=189;Dels=0.00;FS=6.089;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.193;QD=25.67;ReadPosRankSum=2.963;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:3,185:189:99:4852,502,0 chrXIV 86042 . G T 2324 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.9609;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2357,229,0 chrXIV 86730 . A G 6659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=18.3883;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.695;QD=23.53;ReadPosRankSum=0.869;SB=-3.529e+03 GT:AD:DP:GQ:PL 1/1:1,280:283:99:6659,670,0 chrXIV 86790 . T G 7384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=317;Dels=0.00;FS=3.222;HaplotypeScore=13.5074;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=0.522;QD=23.29;ReadPosRankSum=1.699;SB=-4.090e+03 GT:AD:DP:GQ:PL 1/1:1,314:317:99:7384,766,0 chrXIV 86934 . C T 8026.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=19.5387;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.85;SB=-3.733e+03 GT:AD:DP:GQ:PL 1/1:0,323:323:99:8026,832,0 chrXIV 87195 . C T 6148.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=11.2747;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.65;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:6148,640,0 chrXIV 87229 . G T 5874.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=15.9638;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.78;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,244:247:99:5874,577,0 chrXIV 87310 . A G 4542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=207;Dels=0.00;FS=2.574;HaplotypeScore=16.9302;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;MQRankSum=-0.918;QD=21.94;ReadPosRankSum=2.927;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:4542,463,0 chrXIV 87319 . A G 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=173;Dels=0.01;FS=2.732;HaplotypeScore=128.9280;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;MQRankSum=-1.078;QD=23.10;ReadPosRankSum=2.364;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3997,409,0 chrXIV 87321 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=130.0723;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=22.28;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3877,385,0 chrXIV 87439 . G C 4899.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.3208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.78;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4899,496,0 chrXIV 87852 . G A 4090.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.5376;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=24.64;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4090,412,0 chrXIV 88100 . C A 4540.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.3278;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.73;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4540,475,0 chrXIV 88106 . A T 4554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.0826;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.629;QD=20.24;ReadPosRankSum=-0.004;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:3,222:225:99:4554,437,0 chrXIV 88950 . C T 2146 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=29.00;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2179,219,0 chrXIV 88974 . T C 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.505;QD=25.77;ReadPosRankSum=1.675;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1605,162,0 chrXIV 89169 . A G 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=128;Dels=0.00;FS=3.222;HaplotypeScore=8.6184;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-1.127;QD=24.34;ReadPosRankSum=1.650;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3148,327,0 chrXIV 89426 . G C 5486.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=24.60;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5486,559,0 chrXIV 89448 . G A 4099.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.3631;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=21.69;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4099,406,0 chrXIV 89451 . T C 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.8970;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=0.263;QD=19.75;ReadPosRankSum=1.714;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:3792,391,0 chrXIV 89494 . A G 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=5.011;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;MQRankSum=-1.035;QD=16.78;ReadPosRankSum=1.639;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2533,252,0 chrXIV 89495 . T G 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=148;Dels=0.00;FS=2.578;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;MQRankSum=-1.090;QD=16.94;ReadPosRankSum=2.938;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:3,143:148:99:2540,255,0 chrXIV 89543 . T G 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.271;DP=150;Dels=0.00;FS=12.581;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=0.382;QD=21.50;ReadPosRankSum=3.236;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:4,145:150:99:3258,331,0 chrXIV 89675 . T C 4861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=5.084;HaplotypeScore=12.2481;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-1.621;QD=25.45;ReadPosRankSum=1.714;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,186:191:99:4861,493,0 chrXIV 89776 . C T 4438.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.1226;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=27.06;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4438,439,0 chrXIV 89837 . C T 5270.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.5594;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.71;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5270,517,0 chrXIV 90029 . G A 4237.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.95;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4237,418,0 chrXIV 90031 . G A 4211.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.40;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4211,421,0 chrXIV 90137 . G A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2737;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.41;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4076,409,0 chrXIV 90251 . T G 5587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=222;Dels=0.00;FS=2.659;HaplotypeScore=15.0714;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.194;QD=25.17;ReadPosRankSum=2.372;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:5587,580,0 chrXIV 90358 . G A 5916.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=8.7530;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.95;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5916,586,0 chrXIV 90414 . T C 6439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=15.3530;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.651;QD=25.15;ReadPosRankSum=1.705;SB=-3.573e+03 GT:AD:DP:GQ:PL 1/1:1,255:256:99:6439,652,0 chrXIV 90752 . G A 7468.01 PASS AC=2;AF=1.00;AN=2;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=18.2432;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.84;SB=-3.210e+03 GT:AD:DP:GQ:PL 1/1:0,339:342:99:7468,763,0 chrXIV 92328 . A G 4425.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4230;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4425,442,0 chrXIV 93163 . T C 2886 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.88;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2919,303,0 chrXIV 94896 . A C 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.727;QD=22.92;ReadPosRankSum=2.384;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1752,180,0 chrXIV 95089 . T C 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=19.5306;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.458;QD=25.37;ReadPosRankSum=2.387;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:2037,204,0 chrXIV 95393 . A G 4236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.618;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.3834;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.854;QD=24.92;ReadPosRankSum=2.362;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:4236,425,0 chrXIV 95471 . G A 3179 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3212,319,0 chrXIV 95510 . C T 3284.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.9821;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.88;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3284,331,0 chrXIV 95692 . G A 4179.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.64;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4179,418,0 chrXIV 96083 . C T 4430.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.17;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4430,439,0 chrXIV 96132 . T C 5207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=203;Dels=0.00;FS=6.039;HaplotypeScore=17.4832;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-0.348;QD=25.65;ReadPosRankSum=2.965;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:3,199:203:99:5207,541,0 chrXIV 96181 . C A 4835.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.01;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=24.18;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4835,490,0 chrXIV 96218 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=7.6553;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=18.47;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3247,336,0 chrXIV 96228 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=18.8494;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=19.92;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3426,343,0 chrXIV 96324 . G A 5589.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.0854;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=24.95;SB=-2.869e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5589,580,0 chrXIV 96482 . T C 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=7.176;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;MQRankSum=1.711;QD=23.38;ReadPosRankSum=1.649;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3952,412,0 chrXIV 96610 . T A 263 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=61;Dels=0.00;FS=17.634;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=3;MQRankSum=1.673;QD=4.31;ReadPosRankSum=1.673;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:4,57:61:36:296,36,0 chrXIV 96611 . G A 239 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=61;Dels=0.00;FS=17.634;HaplotypeScore=6.7408;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=3;MQRankSum=1.673;QD=3.92;ReadPosRankSum=1.673;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:4,57:61:33:272,33,0 chrXIV 96623 . A G 1067 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.018;DP=73;Dels=0.00;FS=15.315;HaplotypeScore=8.5467;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=4;MQRankSum=-0.018;QD=14.62;ReadPosRankSum=1.942;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,66:73:99:1100,135,0 chrXIV 96626 . G T 1098 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.942;DP=74;Dels=0.00;FS=15.315;HaplotypeScore=4.9929;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=6;MQRankSum=2.123;QD=14.84;ReadPosRankSum=0.708;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,68:74:99:1131,135,0 chrXIV 96631 . G T 1246 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.681;DP=75;Dels=0.00;FS=18.325;HaplotypeScore=3.3286;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=7;MQRankSum=1.681;QD=16.61;ReadPosRankSum=-0.102;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,67:75:99:1279,144,0 chrXIV 96632 . A G 1244 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.051;DP=75;Dels=0.00;FS=18.325;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=7;MQRankSum=1.681;QD=16.59;ReadPosRankSum=-0.153;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,67:75:99:1277,144,0 chrXIV 96658 . A T 646 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.575;DP=51;Dels=0.00;FS=16.435;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.66;MQ0=7;MQRankSum=1.654;QD=12.67;ReadPosRankSum=-1.732;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:8,43:51:72:679,72,0 chrXIV 102473 . T C 113.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.47;MQ0=10;QD=3.91;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:10,19:29:15:146,15,0 chrXIV 102475 . G A 102.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.47;MQ0=10;QD=3.53;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:9,20:29:15:135,15,0 chrXIV 102476 . A G 103.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.89;MQ0=9;QD=3.69;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:9,19:28:15:136,15,0 chrXIV 102480 . T C 111.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=7;QD=4.28;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:6,19:26:15:144,15,0 chrXIV 102481 . A G 108.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.28;MQ0=6;QD=4.33;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:6,19:25:15:141,15,0 chrXIV 102485 . C A 123.26 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=3;QD=4.11;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:3,27:30:15:156,15,0 chrXIV 102488 . T C 142.13 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=3;QD=4.44;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:3,29:32:18:175,18,0 chrXIV 102494 . G A 158.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=3;QD=4.65;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:3,31:34:21:191,21,0 chrXIV 102495 . A G 165.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=3;QD=4.85;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:3,31:34:21:198,21,0 chrXIV 102500 . C T 175.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=1;QD=5.15;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,33:34:21:208,21,0 chrXIV 102507 . G T 184.06 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=1;QD=4.84;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,37:38:21:217,21,0 chrXIV 102628 . C A 2199 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=22.91;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,93:96:99:2232,228,0 chrXIV 102646 . G A 2787 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=24.88;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2820,274,0 chrXIV 102681 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;QD=25.31;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3366,328,0 chrXIV 102817 . T A 1778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.570;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;MQRankSum=-0.400;QD=19.54;ReadPosRankSum=1.618;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1811,186,0 chrXIV 102825 . A G 2004 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=20.04;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2037,210,0 chrXIV 102846 . T C 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=3.997;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;MQRankSum=-1.028;QD=19.27;ReadPosRankSum=1.676;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2403,252,0 chrXIV 102872 . T C 2666 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=20.20;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2699,276,0 chrXIV 102906 . A G 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=1.295;QD=22.79;ReadPosRankSum=2.412;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3041,309,0 chrXIV 103108 . T C 2226 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=23.43;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2259,231,0 chrXIV 103662 . A T 4594.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.9700;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4594,466,0 chrXIV 103902 . T G 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.719;DP=157;Dels=0.00;FS=6.722;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.660;QD=21.83;ReadPosRankSum=2.275;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:3,151:157:99:3428,355,0 chrXIV 104034 . G A 3687.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.26;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,147:152:99:3687,381,0 chrXIV 104153 . T C 3105 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=25.87;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3138,319,0 chrXIV 104189 . A G 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=3.647;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.207;QD=26.33;ReadPosRankSum=1.680;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3476,349,0 chrXIV 104278 . C T 3985.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=24.45;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3985,403,0 chrXIV 104301 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=23.53;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3529,349,0 chrXIV 104374 . G A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=23.36;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3504,346,0 chrXIV 104378 . A G 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=6.049;HaplotypeScore=3.5052;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.008;QD=22.43;ReadPosRankSum=2.401;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3410,351,0 chrXIV 104504 . G A 4022.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.1349;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=24.38;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4022,412,0 chrXIV 104516 . C A 3891.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=24.32;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3891,400,0 chrXIV 104554 . G A 3371.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.3042;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=22.03;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3371,351,0 chrXIV 104770 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=17.99;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2138,213,0 chrXIV 104779 . G A 1752 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=16.07;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1785,183,0 chrXIV 104781 . A T 1777 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=3.006;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;MQRankSum=-1.050;QD=16.30;ReadPosRankSum=2.292;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:1810,183,0 chrXIV 104785 . C T 1761 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;QD=15.58;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1794,177,0 chrXIV 104803 . G C 1718 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;QD=15.62;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1751,186,0 chrXIV 104993 . C T 2411 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=24.86;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2444,246,0 chrXIV 105051 . A T 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.127;DP=122;Dels=0.00;FS=2.753;HaplotypeScore=119.2690;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.494;QD=21.52;ReadPosRankSum=1.643;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2659,270,0 chrXIV 105255 . C T 4294.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.59;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4294,442,0 chrXIV 105379 . T C 6834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=15.3151;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.766;QD=24.58;ReadPosRankSum=1.720;SB=-3.180e+03 GT:AD:DP:GQ:PL 1/1:1,275:278:99:6834,718,0 chrXIV 105689 . G C 8577.01 filter AC=2;AF=1.00;AN=2;DP=364;Dels=0.00;FS=0.000;HaplotypeScore=41.1926;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.56;SB=-3.489e+03 GT:AD:DP:GQ:PL 1/1:0,355:364:99:8577,874,0 chrXIV 105739 . A G 10845.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=490;Dels=0.00;FS=7.613;HaplotypeScore=29.2854;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.919;QD=22.13;ReadPosRankSum=2.434;SB=-5.682e+03 GT:AD:DP:GQ:PL 1/1:2,485:490:99:10845,1135,0 chrXIV 105839 . G A 11777.01 filter AC=2;AF=1.00;AN=2;DP=446;Dels=0.00;FS=0.000;HaplotypeScore=34.3278;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.41;SB=-4.135e+03 GT:AD:DP:GQ:PL 1/1:0,443:446:99:11777,1172,0 chrXIV 105923 . A G 12366.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=545;Dels=0.00;FS=3.015;HaplotypeScore=33.3095;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.518;QD=22.69;ReadPosRankSum=2.418;SB=-7.169e+03 GT:AD:DP:GQ:PL 1/1:2,540:545:99:12366,1286,0 chrXIV 106004 . T G 10132.01 filter AC=2;AF=1.00;AN=2;DP=452;Dels=0.00;FS=0.000;HaplotypeScore=23.6525;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.42;SB=-4.227e+03 GT:AD:DP:GQ:PL 1/1:0,451:452:99:10132,1043,0 chrXIV 106690 . G C 5045.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.49;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,202:206:99:5045,511,0 chrXIV 107444 . C T 4403.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.4937;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4403,448,0 chrXIV 109533 . G A 4842.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4842,508,0 chrXIV 109881 . A G 5809.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=13.1105;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.00;SB=-3.057e+03 GT:AD:DP:GQ:PL 1/1:0,239:242:99:5809,601,0 chrXIV 110418 . A C 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.253;QD=24.65;ReadPosRankSum=1.710;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,158:162:99:3994,406,0 chrXIV 110738 . T C 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.979;HaplotypeScore=12.4321;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.569;QD=24.68;ReadPosRankSum=1.707;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3455,346,0 chrXIV 110765 . G A 3483.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=7.0026;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=25.24;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3483,343,0 chrXIV 111110 . T G 6160.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.44;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6160,619,0 chrXIV 111323 . T C 6436.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.93;SB=-2.864e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:6436,646,0 chrXIV 115270 . G A 3817.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0569;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.66;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3817,385,0 chrXIV 116131 . T C 9737.01 filter AC=2;AF=1.00;AN=2;DP=400;Dels=0.00;FS=0.000;HaplotypeScore=26.8672;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.34;SB=-4.007e+03 GT:AD:DP:GQ:PL 1/1:0,398:400:99:9737,1004,0 chrXIV 116257 . A T 7957.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=380;Dels=0.00;FS=0.000;HaplotypeScore=25.2218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.745;QD=20.94;ReadPosRankSum=1.695;SB=-4.869e+03 GT:AD:DP:GQ:PL 1/1:1,378:379:99:7957,814,0 chrXIV 117735 . C T 5345.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.5772;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.46;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5345,541,0 chrXIV 117840 . G A 6006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=7.1160;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-0.722;QD=24.22;ReadPosRankSum=1.045;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:1,246:248:99:6006,588,0 chrXIV 117847 . C T 6068.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=8.5583;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=23.70;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:6068,607,0 chrXIV 117954 . T C 6846.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=8.5063;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-3.508e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:6846,694,0 chrXIV 118050 . T C 6749.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=11.9388;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.84;SB=-3.018e+03 GT:AD:DP:GQ:PL 1/1:0,308:309:99:6749,706,0 chrXIV 118249 . G C 6828.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=22.3261;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.22;SB=-3.390e+03 GT:AD:DP:GQ:PL 1/1:0,287:294:99:6828,703,0 chrXIV 121619 . C T 5027.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=16.1627;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.88;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:5027,499,0 chrXIV 123935 . G A 3320.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.6174;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.54;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3320,328,0 chrXIV 126633 . G T 1896 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1929,192,0 chrXIV 126744 . G A 1134 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.62;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1167,117,0 chrXIV 127632 . A G 4387.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4387,442,0 chrXIV 128153 . G C 6212.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=18.9516;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-2.837e+03 GT:AD:DP:GQ:PL 1/1:0,246:250:99:6212,628,0 chrXIV 128908 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.21;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3458,354,0 chrXIV 131595 . C A 4269.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.2677;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.26;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4269,430,0 chrXIV 131819 . C A 4043.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.4718;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4043,409,0 chrXIV 131912 . A G 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.025;DP=146;Dels=0.00;FS=3.040;HaplotypeScore=15.1732;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.322;QD=24.12;ReadPosRankSum=2.113;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3521,367,0 chrXIV 132250 . T C 4588.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.5421;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.77;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4588,466,0 chrXIV 134513 . C T 4798.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.12;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4798,469,0 chrXIV 135401 . C T 4209.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.9228;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.38;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4209,418,0 chrXIV 137678 . C T 3828.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.63;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3828,376,0 chrXIV 140943 . A G 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=141;Dels=0.00;FS=4.187;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=-1.333;QD=25.06;ReadPosRankSum=1.607;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:3534,361,0 chrXIV 141004 . A G 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.025;DP=144;Dels=0.00;FS=3.599;HaplotypeScore=10.7609;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=0.464;QD=24.78;ReadPosRankSum=-1.000;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3569,351,0 chrXIV 141630 . C A 4541.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=16.1309;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.23;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4541,457,0 chrXIV 141962 . A G 3351.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.78;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3351,348,0 chrXIV 144886 . G A 5491.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.3938;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.30;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5491,571,0 chrXIV 148331 . T C 6559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.627;DP=273;Dels=0.00;FS=7.947;HaplotypeScore=19.6673;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.872;QD=24.03;ReadPosRankSum=3.707;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:5,268:273:99:6559,676,0 chrXIV 148823 . A G 4695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.203;QD=24.71;ReadPosRankSum=1.714;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4695,475,0 chrXIV 149024 . A G 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.483;QD=25.53;ReadPosRankSum=1.632;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3574,361,0 chrXIV 149054 . T C 2654 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.91;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2687,279,0 chrXIV 149537 . T C 4391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=172;Dels=0.00;FS=3.061;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.987;QD=25.53;ReadPosRankSum=1.672;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4391,460,0 chrXIV 149571 . C T 4481.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.5602;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.05;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4481,439,0 chrXIV 149801 . T C 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=157;Dels=0.00;FS=5.891;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.065;QD=23.72;ReadPosRankSum=2.916;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:3724,382,0 chrXIV 150370 . T C 4366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.950;DP=183;Dels=0.00;FS=14.082;HaplotypeScore=24.2708;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.494;QD=23.86;ReadPosRankSum=4.156;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:6,176:183:99:4366,442,0 chrXIV 150779 . G A 4234.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5917;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4234,433,0 chrXIV 151127 . C T 4158.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.05;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4158,424,0 chrXIV 151394 . G A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.87;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3880,385,0 chrXIV 153222 . A G 4055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=182;Dels=0.00;FS=2.930;HaplotypeScore=14.2630;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.403;QD=22.28;ReadPosRankSum=2.381;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:4055,418,0 chrXIV 156507 . A G 2761 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2794,285,0 chrXIV 158042 . G T 3634.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.59;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3634,364,0 chrXIV 159166 . A T 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.740;DP=143;Dels=0.00;FS=2.589;HaplotypeScore=15.1857;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.796;QD=19.98;ReadPosRankSum=2.838;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:2890,291,0 chrXIV 159768 . C A 3772.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3772,373,0 chrXIV 161522 . A T 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.279;QD=24.52;ReadPosRankSum=1.620;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3073,301,0 chrXIV 161674 . C T 2846 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.52;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2879,291,0 chrXIV 162100 . C T 2504 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.55;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2537,252,0 chrXIV 162494 . C A 3413.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.0855;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.91;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3413,334,0 chrXIV 165144 . T G 3793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=161;Dels=0.00;FS=3.176;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.650;QD=23.56;ReadPosRankSum=1.710;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3793,397,0 chrXIV 166302 . C G 3900.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.2349;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3900,397,0 chrXIV 168578 . A G 4649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=191;Dels=0.00;FS=10.880;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.159;QD=24.34;ReadPosRankSum=2.910;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:3,187:191:99:4649,481,0 chrXIV 169705 . C T 3549.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=25.35;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3549,355,0 chrXIV 171097 . C T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=27.40;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3590,361,0 chrXIV 172011 . G A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=16.8069;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.89;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3457,358,0 chrXIV 174058 . G C 3420.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.11;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3420,351,0 chrXIV 175092 . G A 4343.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4343,442,0 chrXIV 178487 . G A 2733 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=15.6449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2766,274,0 chrXIV 180725 . T C 4116.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.8713;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.79;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4116,412,0 chrXIV 181243 . T C 1951 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.09;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1984,204,0 chrXIV 183272 . C G 3829.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3829,391,0 chrXIV 185261 . G A 1491 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1524,153,0 chrXIV 185626 . A G 6323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=19.0241;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.105;QD=24.89;ReadPosRankSum=1.664;SB=-2.844e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:6323,646,0 chrXIV 185846 . T C 4293.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.3789;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.82;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4293,451,0 chrXIV 186892 . G T 1399 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=21.20;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1432,144,0 chrXIV 186916 . C A 1148 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.20;MQ0=0;QD=19.79;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1181,120,0 chrXIV 186921 . A G 1219 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=19.66;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1252,129,0 chrXIV 186964 . C T 1966 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.37;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1999,201,0 chrXIV 186987 . T A 2119 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.29;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2152,216,0 chrXIV 187156 . C T 2006 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=25.72;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:2039,210,0 chrXIV 187320 . C T 3490.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=26.04;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3490,346,0 chrXIV 187353 . T C 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=150;Dels=0.00;FS=2.946;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.253;QD=25.69;ReadPosRankSum=2.351;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3854,394,0 chrXIV 187884 . A C 1647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.194;QD=15.99;ReadPosRankSum=1.631;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1680,177,0 chrXIV 189103 . G A 6341.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=11.4292;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.75;SB=-3.562e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:6341,652,0 chrXIV 189310 . C T 6372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=10.5010;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.583;QD=24.89;ReadPosRankSum=0.244;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:1,255:256:99:6372,637,0 chrXIV 191108 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6439;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=27.48;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1517,153,0 chrXIV 191137 . A G 1542 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=27.05;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1575,159,0 chrXIV 191184 . C A 1545 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,62:65:99:1578,156,0 chrXIV 191241 . A G 2921 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.75;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2954,300,0 chrXIV 191365 . T G 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.197;QD=22.43;ReadPosRankSum=1.660;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2411,258,0 chrXIV 191560 . G A 2765 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.9561;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.04;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2798,297,0 chrXIV 191890 . G A 5312.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.4851;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.37;SB=-2.881e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5312,541,0 chrXIV 191917 . T C 5405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=228;Dels=0.00;FS=7.020;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.733;QD=23.71;ReadPosRankSum=2.395;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:2,224:228:99:5405,565,0 chrXIV 192641 . G T 3643.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3643,361,0 chrXIV 193276 . G A 2886 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.32;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2919,292,0 chrXIV 193417 . A G 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=100;Dels=0.00;FS=8.476;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.563;QD=26.62;ReadPosRankSum=2.401;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2695,270,0 chrXIV 193473 . C A 3150 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.47;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3183,310,0 chrXIV 193628 . T G 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=107;Dels=0.00;FS=7.014;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.886;QD=24.73;ReadPosRankSum=2.381;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2679,276,0 chrXIV 193668 . C T 2835 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.54;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2868,286,0 chrXIV 193852 . A G 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.729;DP=93;Dels=0.00;FS=6.125;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-2.077;QD=22.43;ReadPosRankSum=2.925;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:3,90:93:99:2119,216,0 chrXIV 194047 . A G 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=105;Dels=0.00;FS=3.609;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.394;QD=24.60;ReadPosRankSum=1.698;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,100:105:99:2616,264,0 chrXIV 194260 . A G 4401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=170;Dels=0.00;FS=8.156;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.665;QD=25.89;ReadPosRankSum=2.362;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:4401,439,0 chrXIV 194299 . A G 3943.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3943,406,0 chrXIV 194351 . G A 3492.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3492,346,0 chrXIV 194419 . T C 3903.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.51;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3903,403,0 chrXIV 194533 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.53;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3250,336,0 chrXIV 194614 . A C 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=128;Dels=0.00;FS=8.813;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.556;QD=26.38;ReadPosRankSum=1.610;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:2,124:128:99:3377,349,0 chrXIV 194656 . G A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.21;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3385,331,0 chrXIV 195206 . T C 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.438;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.686;QD=25.36;ReadPosRankSum=1.667;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2721,273,0 chrXIV 195358 . A C 4442.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.96;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4442,454,0 chrXIV 195766 . A G 6158.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.93;SB=-3.428e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:6158,619,0 chrXIV 196115 . A G 1239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=9.6576;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.000;QD=20.65;ReadPosRankSum=1.675;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1272,132,0 chrXIV 198249 . T C 1142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.200;DP=102;Dels=0.00;FS=1.770;HaplotypeScore=9.2358;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.062;QD=11.20;ReadPosRankSum=2.414;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:8,94:102:99:1175,114,0 chrXIV 198392 . C T 4628.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.7573;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.15;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4628,466,0 chrXIV 199105 . G A 4844.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.6354;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.32;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4844,490,0 chrXIV 199403 . A G 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.615;QD=21.71;ReadPosRankSum=1.654;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:3930,406,0 chrXIV 199813 . G C 6168.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.18;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:0,239:245:99:6168,634,0 chrXIV 200256 . G A 4153.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.8951;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.57;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4153,409,0 chrXIV 201973 . C T 1611 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.69;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1644,168,0 chrXIV 202394 . G A 5246.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.98;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5246,520,0 chrXIV 202414 . T A 4733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=197;Dels=0.00;FS=2.938;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.081;QD=24.03;ReadPosRankSum=2.425;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4733,478,0 chrXIV 203039 . T A 5356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=220;Dels=0.00;FS=3.001;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.363;QD=24.35;ReadPosRankSum=2.360;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:5356,541,0 chrXIV 204739 . G A 4501.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.4733;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=27.28;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4501,439,0 chrXIV 205138 . G A 2926 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=23.41;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2959,303,0 chrXIV 205199 . T C 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=3.027;HaplotypeScore=5.0261;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=1.388;QD=19.59;ReadPosRankSum=2.419;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3207,331,0 chrXIV 205208 . T C 3500.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.11;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3500,361,0 chrXIV 205874 . C T 6220.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=13.7614;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.21;SB=-3.344e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6220,619,0 chrXIV 206181 . G A 3978.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.86;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3978,397,0 chrXIV 206187 . T C 3838.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=21.20;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3838,391,0 chrXIV 206336 . G A 5389.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.1694;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=26.29;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5389,526,0 chrXIV 206575 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.0296;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.93;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2879,291,0 chrXIV 206709 . T C 1942 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=23.68;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1975,201,0 chrXIV 206756 . G C 2521 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=25.46;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2554,261,0 chrXIV 206786 . G A 2842 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=27.86;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2875,283,0 chrXIV 206830 . G C 2332 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=25.63;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2365,237,0 chrXIV 206848 . A G 2201 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.16;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2234,234,0 chrXIV 206892 . A G 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=5.103;HaplotypeScore=2.3617;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;MQRankSum=-0.331;QD=18.99;ReadPosRankSum=1.707;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2615,264,0 chrXIV 206906 . G A 2469 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.2434;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;QD=17.39;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2502,261,0 chrXIV 206920 . A G 2528 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=17.32;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2561,270,0 chrXIV 206936 . C A 3147 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=19.67;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3180,313,0 chrXIV 206968 . T C 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.070;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;MQRankSum=-0.451;QD=16.73;ReadPosRankSum=1.708;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:2509,261,0 chrXIV 206986 . T C 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.399;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=-0.940;QD=20.13;ReadPosRankSum=1.707;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2851,297,0 chrXIV 207040 . T C 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=3.617;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=0.803;QD=22.67;ReadPosRankSum=1.707;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3162,328,0 chrXIV 207094 . G A 3521.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.2725;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=21.87;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3521,366,0 chrXIV 207129 . T C 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0100;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.701;QD=21.87;ReadPosRankSum=1.711;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3674,379,0 chrXIV 207220 . T C 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=15.2476;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-0.014;QD=20.89;ReadPosRankSum=1.704;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2686,273,0 chrXIV 207283 . T G 3045 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.23;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3078,307,0 chrXIV 207292 . G A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=22.56;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3384,348,0 chrXIV 207346 . T C 3454.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4583;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.68;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3454,355,0 chrXIV 207358 . T C 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=170;Dels=0.00;FS=3.384;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-1.121;QD=20.13;ReadPosRankSum=1.712;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3422,357,0 chrXIV 207451 . C T 3950.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.09;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3950,406,0 chrXIV 207631 . T C 4217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=3.847;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=1.223;QD=23.69;ReadPosRankSum=1.713;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4217,439,0 chrXIV 207736 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2974,312,0 chrXIV 207991 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2801,277,0 chrXIV 208195 . G A 3135 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.7205;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.88;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3168,325,0 chrXIV 208275 . C G 3651.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.02;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3651,367,0 chrXIV 208418 . A G 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.2564;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.871;QD=23.53;ReadPosRankSum=1.712;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4071,421,0 chrXIV 208468 . A G 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.1498;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.882;QD=22.95;ReadPosRankSum=1.670;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:1,166:170:99:3925,409,0 chrXIV 208804 . A G 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=3.705;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.618;QD=26.22;ReadPosRankSum=1.672;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:3048,309,0 chrXIV 208843 . G A 2908 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2941,298,0 chrXIV 208921 . A G 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=91;Dels=0.00;FS=3.033;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.853;QD=23.18;ReadPosRankSum=2.396;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2142,216,0 chrXIV 209095 . T C 2542 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.76;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2575,270,0 chrXIV 209155 . G A 2682 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=26.04;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2715,270,0 chrXIV 209209 . G A 3370.01 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=28.08;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3370,340,0 chrXIV 209482 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3824,394,0 chrXIV 209761 . A T 2471 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2504,255,0 chrXIV 209853 . G A 3855.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.0712;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.09;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3855,400,0 chrXIV 211755 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.87;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3071,301,0 chrXIV 212326 . T C 5062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;MQRankSum=1.160;QD=22.50;ReadPosRankSum=1.717;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:5062,523,0 chrXIV 212344 . T G 4547.01 SnpCluster AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=20.86;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4547,469,0 chrXIV 212349 . C T 4709.01 SnpCluster AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=21.60;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4709,475,0 chrXIV 212353 . G A 4613.01 SnpCluster AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=21.46;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4613,463,0 chrXIV 212449 . G A 3200 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.9889;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.88;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3233,333,0 chrXIV 212482 . G A 4345.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=24.83;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4345,453,0 chrXIV 212538 . G A 5095.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.5242;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=22.44;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5095,520,0 chrXIV 212548 . T C 4845.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=218;Dels=0.00;FS=8.009;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=-0.603;QD=22.22;ReadPosRankSum=2.427;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4845,502,0 chrXIV 212592 . C A 3112 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=18.2639;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=20.34;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3145,310,0 chrXIV 212631 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=24.22;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3182,330,0 chrXIV 213031 . G A 2960 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.2853;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.68;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2993,309,0 chrXIV 213061 . G A 3474.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.6184;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.79;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3474,346,0 chrXIV 213126 . T A 3003 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.76;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3036,310,0 chrXIV 213146 . G A 2361 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=18.16;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2394,243,0 chrXIV 213154 . C T 2319 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=17.31;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2352,240,0 chrXIV 213493 . A G 4126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=163;Dels=0.00;FS=3.808;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.581;QD=25.31;ReadPosRankSum=1.711;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:4126,427,0 chrXIV 213556 . T A 4169.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.69;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4169,424,0 chrXIV 213580 . G A 3836.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.70;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3836,391,0 chrXIV 213646 . A G 3729.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=25.54;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3729,373,0 chrXIV 213670 . G A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=25.78;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3583,358,0 chrXIV 213772 . C T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=25.89;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3599,361,0 chrXIV 213856 . C T 2702 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.30;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2735,282,0 chrXIV 213861 . T A 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=0.577;QD=18.42;ReadPosRankSum=1.636;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2685,276,0 chrXIV 214071 . G A 3488.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=24.39;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3488,346,0 chrXIV 214248 . T C 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.624;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.416;QD=23.62;ReadPosRankSum=1.705;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3104,327,0 chrXIV 214258 . C A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=24.53;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3287,339,0 chrXIV 214305 . C G 3056 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.67;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3089,324,0 chrXIV 214622 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3338,328,0 chrXIV 214714 . G A 3001 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.40;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3034,307,0 chrXIV 214833 . G A 2684 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.1805;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.08;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2717,285,0 chrXIV 214888 . G C 3064 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=26.64;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3097,318,0 chrXIV 214918 . T C 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.620;QD=27.30;ReadPosRankSum=1.676;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3385,346,0 chrXIV 215120 . T C 3909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=164;Dels=0.00;FS=2.990;HaplotypeScore=16.4100;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.128;QD=23.84;ReadPosRankSum=2.374;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3909,409,0 chrXIV 215180 . G A 4191.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.6721;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.10;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4191,421,0 chrXIV 215285 . C T 6160.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=33.0772;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.84;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:6160,619,0 chrXIV 215462 . T C 4511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=195;Dels=0.00;FS=6.795;HaplotypeScore=12.8096;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.804;QD=23.13;ReadPosRankSum=2.399;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4511,466,0 chrXIV 216647 . A T 3816.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3816,382,0 chrXIV 216974 . C T 986 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.41;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1019,99,0 chrXIV 218831 . G T 2065 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.47;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2098,207,0 chrXIV 218903 . A G 1717 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=24.18;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1750,177,0 chrXIV 220550 . T G 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=-1.490;QD=18.90;ReadPosRankSum=1.652;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2471,252,0 chrXIV 220551 . T A 2512 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.62;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2545,252,0 chrXIV 220663 . A T 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=4.089;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.216;QD=23.93;ReadPosRankSum=1.683;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3374,334,0 chrXIV 220950 . C T 5416.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=12.4615;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.15;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:1,232:234:99:5416,556,0 chrXIV 224607 . G A 2652 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2685,270,0 chrXIV 226779 . A G 4285.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.21;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4285,439,0 chrXIV 229890 . C T 1995 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=73.9127;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.33;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2028,207,0 chrXIV 229971 . T C 2079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=3.955;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.936;QD=23.90;ReadPosRankSum=1.653;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2112,219,0 chrXIV 230304 . C T 3437.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=27.28;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3437,343,0 chrXIV 230535 . G A 2929 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.43;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2962,303,0 chrXIV 230725 . T C 2186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=94;Dels=0.01;FS=6.141;HaplotypeScore=22.2636;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.703;QD=23.26;ReadPosRankSum=2.858;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:3,89:93:99:2219,225,0 chrXIV 230942 . T C 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=138;Dels=0.00;FS=2.687;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.078;QD=25.56;ReadPosRankSum=2.343;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3527,358,0 chrXIV 231034 . G A 3820.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=25.47;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3820,373,0 chrXIV 231083 . C G 3328.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.9315;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.54;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3328,346,0 chrXIV 231112 . T C 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.194;DP=171;Dels=0.00;FS=8.175;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-0.465;QD=17.94;ReadPosRankSum=3.030;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:4,167:171:99:3101,327,0 chrXIV 231426 . A G 6767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=267;Dels=0.00;FS=6.440;HaplotypeScore=13.7370;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.263;QD=25.34;ReadPosRankSum=2.431;SB=-3.412e+03 GT:AD:DP:GQ:PL 1/1:2,264:267:99:6767,679,0 chrXIV 231454 . C A 5998.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.97;SB=-3.139e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5998,598,0 chrXIV 232508 . A G 4949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=208;Dels=0.00;FS=2.578;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.850;QD=23.79;ReadPosRankSum=2.879;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:4949,499,0 chrXIV 232914 . A G 4734.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.73;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4734,496,0 chrXIV 233081 . A G 5305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.500;DP=228;Dels=0.00;FS=10.774;HaplotypeScore=16.7561;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.159;QD=23.27;ReadPosRankSum=3.749;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:5,221:228:99:5305,550,0 chrXIV 233507 . A G 4441.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.3272;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4441,460,0 chrXIV 233585 . C T 4502.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.6521;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.51;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4502,478,0 chrXIV 234325 . G A 4316.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=29.36;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4316,424,0 chrXIV 234545 . G A 5257.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.80;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5257,526,0 chrXIV 234916 . T C 4522.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=25.12;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4522,478,0 chrXIV 234988 . G A 4291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.141;QD=21.67;ReadPosRankSum=0.725;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4291,424,0 chrXIV 234990 . T C 4210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.4960;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=-1.411;QD=20.34;ReadPosRankSum=1.664;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:1,204:207:99:4210,424,0 chrXIV 235358 . T C 5080.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=15.3311;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.71;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,231:234:99:5080,511,0 chrXIV 235393 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.34;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4034,415,0 chrXIV 235423 . G A 3811.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.8245;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.68;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3811,376,0 chrXIV 237780 . T C 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.1939;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.083;QD=23.30;ReadPosRankSum=1.710;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,159:164:99:3822,402,0 chrXIV 237838 . T G 4662.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.8275;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.06;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4662,484,0 chrXIV 238429 . A G 5596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.087;QD=25.44;ReadPosRankSum=1.700;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:5596,574,0 chrXIV 242064 . C T 7935.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=23.1583;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.19;SB=-4.175e+03 GT:AD:DP:GQ:PL 1/1:0,324:328:99:7935,782,0 chrXIV 242111 . C T 7336.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=32.8016;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.74;SB=-4.075e+03 GT:AD:DP:GQ:PL 1/1:0,305:309:99:7336,724,0 chrXIV 243194 . G T 3385.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3385,331,0 chrXIV 243291 . G A 4304.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.5884;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.52;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4304,424,0 chrXIV 243530 . A T 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=119;Dels=0.00;FS=4.034;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.131;QD=21.19;ReadPosRankSum=1.703;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2555,264,0 chrXIV 244308 . C A 3513.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.0559;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.09;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3513,352,0 chrXIV 244768 . G C 4927.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.03;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:0,200:205:99:4927,493,0 chrXIV 244915 . T G 5636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.9342;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.148;QD=24.94;ReadPosRankSum=1.654;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:1,222:226:99:5636,601,0 chrXIV 245027 . T C 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=3.953;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.204;QD=25.62;ReadPosRankSum=1.690;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4202,436,0 chrXIV 245307 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.8880;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3665,376,0 chrXIV 245680 . A G 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.8981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.880;QD=23.63;ReadPosRankSum=1.705;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:3058,309,0 chrXIV 245895 . G C 3175 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.61;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3208,330,0 chrXIV 246138 . C T 2648 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2681,265,0 chrXIV 247567 . C T 4909.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4909,487,0 chrXIV 250552 . A G 2586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=105;Dels=0.00;FS=11.509;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-2.068;QD=24.63;ReadPosRankSum=2.933;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:3,102:105:99:2619,270,0 chrXIV 250639 . G C 3775.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.51;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3775,388,0 chrXIV 250673 . T C 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=144;Dels=0.00;FS=3.005;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.539;QD=24.19;ReadPosRankSum=2.381;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3484,358,0 chrXIV 250896 . C T 2686 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2719,265,0 chrXIV 252203 . C G 7059.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.21;SB=-3.657e+03 GT:AD:DP:GQ:PL 1/1:0,277:280:99:7059,715,0 chrXIV 254148 . G A 2672 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2705,282,0 chrXIV 254474 . C T 6756.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=5.8398;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=25.40;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6756,670,0 chrXIV 254495 . T C 6714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.270;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=18.8969;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=0.931;QD=22.38;ReadPosRankSum=3.380;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:4,296:300:99:6714,688,0 chrXIV 254579 . C T 10041.01 filter AC=2;AF=1.00;AN=2;DP=380;Dels=0.00;FS=0.000;HaplotypeScore=16.7056;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.42;SB=-3.048e+03 GT:AD:DP:GQ:PL 1/1:0,380:380:99:10041,1022,0 chrXIV 254632 . T C 10532.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=399;Dels=0.00;FS=2.975;HaplotypeScore=11.2081;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.343;QD=26.40;ReadPosRankSum=2.437;SB=-5.114e+03 GT:AD:DP:GQ:PL 1/1:2,395:399:99:10532,1088,0 chrXIV 254966 . G A 3636.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.2418;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=18.74;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3636,367,0 chrXIV 255178 . G A 2133 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=22.94;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2166,222,0 chrXIV 255189 . A T 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=4.539;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=-1.694;QD=20.84;ReadPosRankSum=1.694;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1929,201,0 chrXIV 255192 . C T 1937 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=22.01;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1970,195,0 chrXIV 255215 . G A 1942 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=21.58;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1975,189,0 chrXIV 255330 . C A 5257.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.7679;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.42;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5257,532,0 chrXIV 255754 . C A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.68;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3682,379,0 chrXIV 256499 . C T 3022 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:3055,307,0 chrXIV 256840 . T C 3961.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5910;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.06;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3961,394,0 chrXIV 257173 . T C 7022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=13.9489;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.735;QD=24.55;ReadPosRankSum=1.708;SB=-4.029e+03 GT:AD:DP:GQ:PL 1/1:1,284:286:99:7022,703,0 chrXIV 258590 . G C 3157 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=25.26;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3190,325,0 chrXIV 258883 . C T 4044.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.93;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4044,409,0 chrXIV 259198 . T A 3967.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.34;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3967,388,0 chrXIV 259415 . C T 3897.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.9241;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.98;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3897,400,0 chrXIV 259493 . A T 4146.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.98;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4146,418,0 chrXIV 259694 . A G 3486.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.21;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3486,372,0 chrXIV 260357 . C T 2392 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.61;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2425,246,0 chrXIV 260586 . G A 2708 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=23.96;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2741,276,0 chrXIV 260605 . C T 2132 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.50;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2165,216,0 chrXIV 260618 . A G 2371 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.55;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2404,243,0 chrXIV 261045 . C T 3709.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.62;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3709,367,0 chrXIV 261149 . C T 3542.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3542,361,0 chrXIV 261362 . C T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.46;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3335,340,0 chrXIV 261635 . G T 3116 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.97;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3149,313,0 chrXIV 261659 . G A 3191 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.55;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3224,328,0 chrXIV 261740 . T C 4854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=190;Dels=0.00;FS=2.571;HaplotypeScore=12.3977;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.112;QD=25.55;ReadPosRankSum=2.963;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:3,186:190:99:4854,490,0 chrXIV 261861 . G C 4110.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.4708;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.32;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4110,412,0 chrXIV 262265 . G A 2796 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.37;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2829,285,0 chrXIV 262301 . G A 2382 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=20.53;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2415,240,0 chrXIV 262310 . G A 2410 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=19.28;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2443,243,0 chrXIV 262400 . T C 3377.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1659;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.83;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3377,349,0 chrXIV 262513 . T G 2459 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.87;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2492,261,0 chrXIV 263036 . A G 3870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=3.563;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.100;QD=24.19;ReadPosRankSum=1.689;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3870,397,0 chrXIV 263487 . C T 1954 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.72;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1987,195,0 chrXIV 263592 . C T 1781 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=18.75;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,90:95:99:1814,186,0 chrXIV 263625 . T A 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=97;Dels=0.00;FS=3.018;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.063;QD=23.05;ReadPosRankSum=2.348;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2269,225,0 chrXIV 263896 . A C 3867.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.5767;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.75;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3867,403,0 chrXIV 263968 . T C 4306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=201;Dels=0.00;FS=13.494;HaplotypeScore=17.8004;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.385;QD=21.42;ReadPosRankSum=2.905;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:4306,421,0 chrXIV 264064 . C T 3899.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.0816;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3899,403,0 chrXIV 264232 . A G 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=158;Dels=0.00;FS=14.062;HaplotypeScore=14.3921;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.183;QD=21.16;ReadPosRankSum=2.955;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:3,154:158:99:3343,340,0 chrXIV 264468 . G T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.79;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3791,385,0 chrXIV 264537 . A G 4525.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.14;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4525,454,0 chrXIV 265092 . C T 4506.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.49;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4506,457,0 chrXIV 265258 . G C 5447.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.21;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5447,553,0 chrXIV 265328 . C T 6640.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.96;SB=-3.609e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:6640,658,0 chrXIV 265514 . C T 4211.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4211,415,0 chrXIV 265583 . A G 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.5379;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.762;QD=22.43;ReadPosRankSum=1.709;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3387,352,0 chrXIV 265690 . G A 3314.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3314,325,0 chrXIV 266015 . C A 4788.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.4743;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.47;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4788,490,0 chrXIV 266760 . C T 3533.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=24.03;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3533,361,0 chrXIV 266800 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-1.339;QD=24.16;ReadPosRankSum=1.683;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3431,349,0 chrXIV 266808 . G A 3095 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.11;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3128,318,0 chrXIV 266839 . C T 2636 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9980;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.34;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2669,276,0 chrXIV 266907 . T C 2037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-1.289;QD=23.69;ReadPosRankSum=1.611;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2070,216,0 chrXIV 266924 . G A 2231 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=25.94;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2264,222,0 chrXIV 267161 . G A 2561 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.62;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2594,250,0 chrXIV 267267 . C T 1504 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1537,159,0 chrXIV 268096 . T A 4929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=203;Dels=0.00;FS=4.210;HaplotypeScore=16.2128;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.623;QD=24.28;ReadPosRankSum=1.715;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4929,487,0 chrXIV 268265 . A G 8054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=308;Dels=0.00;FS=10.406;HaplotypeScore=12.6477;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.571;QD=26.15;ReadPosRankSum=2.378;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:2,305:308:99:8054,817,0 chrXIV 268398 . T G 8319.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=17.0236;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.21;SB=-3.898e+03 GT:AD:DP:GQ:PL 1/1:0,330:330:99:8319,841,0 chrXIV 268643 . G A 5554.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=22.7081;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.94;SB=-3.138e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5554,541,0 chrXIV 268898 . C T 4577.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.12;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4577,451,0 chrXIV 269266 . C G 6102.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=27.24;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:6102,604,0 chrXIV 269607 . G C 5365.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=25.9170;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.84;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,221:225:99:5365,559,0 chrXIV 272165 . C T 6282.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=16.5945;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.07;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:1,259:261:99:6282,628,0 chrXIV 272462 . G C 3040 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3073,321,0 chrXIV 275211 . A C 4326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=189;Dels=0.00;FS=2.574;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.325;QD=22.89;ReadPosRankSum=2.963;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:3,186:189:99:4326,439,0 chrXIV 277334 . A T 5892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=241;Dels=0.00;FS=6.371;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-2.093;QD=24.45;ReadPosRankSum=2.409;SB=-3.255e+03 GT:AD:DP:GQ:PL 1/1:2,239:241:99:5892,595,0 chrXIV 277359 . T G 5388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=233;Dels=0.00;FS=6.229;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.585;QD=23.12;ReadPosRankSum=2.418;SB=-3.379e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:5388,544,0 chrXIV 277361 . G A 5499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.547;QD=23.70;ReadPosRankSum=1.417;SB=-3.412e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:5499,544,0 chrXIV 277454 . C T 4479.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5007;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.02;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4479,457,0 chrXIV 278187 . C T 4501.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.57;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4501,460,0 chrXIV 279996 . G A 780 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.37;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:813,81,0 chrXIV 281196 . G A 5094.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.6283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5094,511,0 chrXIV 281634 . C T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.7978;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.16;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3752,379,0 chrXIV 282032 . C T 2572 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.17;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2605,261,0 chrXIV 282589 . C T 7120.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=26.2571;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=2;QD=23.27;SB=-3.361e+03 GT:AD:DP:GQ:PL 1/1:0,305:306:99:7120,727,0 chrXIV 283562 . A G 433 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.32;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:48:466,48,0 chrXIV 286728 . A G 3596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=154;Dels=0.00;FS=5.552;HaplotypeScore=11.8540;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.417;QD=23.35;ReadPosRankSum=2.954;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:3,149:154:99:3596,373,0 chrXIV 287504 . C T 3004 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3037,315,0 chrXIV 291136 . A G 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.383;QD=20.99;ReadPosRankSum=1.705;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2741,288,0 chrXIV 294388 . G A 4610.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.39;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4610,466,0 chrXIV 294681 . A G 4635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=192;Dels=0.00;FS=5.328;HaplotypeScore=17.4795;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.262;QD=24.14;ReadPosRankSum=2.932;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:4635,466,0 chrXIV 294859 . G A 4402.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.30;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4402,442,0 chrXIV 295050 . T C 5342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.032;DP=217;Dels=0.00;FS=8.724;HaplotypeScore=14.2754;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.489;QD=24.62;ReadPosRankSum=2.629;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:4,212:217:99:5342,528,0 chrXIV 295870 . T C 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=3.367;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.829;QD=23.24;ReadPosRankSum=1.690;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3858,403,0 chrXIV 296367 . G C 4314.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.2763;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.95;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,181:188:99:4314,439,0 chrXIV 296394 . A G 4759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=198;Dels=0.00;FS=3.019;HaplotypeScore=9.6693;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-2.288;QD=24.04;ReadPosRankSum=2.425;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:4759,487,0 chrXIV 297016 . A G 4416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-1.732;QD=24.95;ReadPosRankSum=1.693;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4416,454,0 chrXIV 297187 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8387;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.27;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3467,358,0 chrXIV 297196 . C T 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.363;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.8543;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-0.060;QD=20.80;ReadPosRankSum=-1.148;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3578,334,0 chrXIV 297253 . T C 4216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=187;Dels=0.00;FS=2.670;HaplotypeScore=8.1160;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-1.727;QD=22.55;ReadPosRankSum=2.397;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4216,436,0 chrXIV 297334 . G A 3696.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.5657;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.69;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3696,385,0 chrXIV 297366 . C T 4071.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=24.82;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4071,412,0 chrXIV 297636 . C T 3215 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=22.02;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3248,319,0 chrXIV 297638 . C T 3169 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=21.13;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3202,322,0 chrXIV 297762 . G A 2436 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=96.9905;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.47;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2469,249,0 chrXIV 297810 . A G 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=147;Dels=0.01;FS=5.381;HaplotypeScore=13.2185;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=0.442;QD=19.67;ReadPosRankSum=1.708;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2924,303,0 chrXIV 298016 . T C 4563.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=23.05;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4563,466,0 chrXIV 298031 . C A 4934.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=4.1521;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=22.74;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4934,493,0 chrXIV 298096 . A G 2614 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=22.53;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2647,270,0 chrXIV 298110 . C A 2728 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=24.36;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2761,279,0 chrXIV 298243 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.98;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3081,307,0 chrXIV 298397 . A C 5373.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.1900;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=27.41;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:5373,547,0 chrXIV 298460 . G A 3519.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.6880;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=27.71;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3519,346,0 chrXIV 299003 . C T 2932 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.05;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2965,312,0 chrXIV 299018 . C T 2820 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.7708;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.43;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2853,286,0 chrXIV 299515 . A G 2095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.591;QD=23.81;ReadPosRankSum=1.653;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2128,222,0 chrXIV 300017 . T C 4472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=180;Dels=0.00;FS=6.092;HaplotypeScore=10.2865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.827;QD=24.84;ReadPosRankSum=2.894;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:4472,451,0 chrXIV 300265 . G A 4054.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4054,394,0 chrXIV 301067 . T A 1205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.266;QD=26.20;ReadPosRankSum=2.343;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:2,44:46:99:1238,123,0 chrXIV 301290 . T C 2340 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.37;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2373,246,0 chrXIV 304122 . G A 4098.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.69;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4098,409,0 chrXIV 306250 . A G 7004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=281;Dels=0.00;FS=5.820;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.918;QD=24.93;ReadPosRankSum=2.889;SB=-3.403e+03 GT:AD:DP:GQ:PL 1/1:3,278:281:99:7004,727,0 chrXIV 307339 . G A 3419.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.5596;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.25;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3419,349,0 chrXIV 309212 . T C 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.682;QD=21.86;ReadPosRankSum=1.707;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:3094,315,0 chrXIV 310181 . A G 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.912;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.325;QD=25.09;ReadPosRankSum=1.588;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2442,249,0 chrXIV 312942 . T C 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=5.331;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.210;QD=23.96;ReadPosRankSum=1.688;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3809,397,0 chrXIV 316703 . C T 4535.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.1079;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.87;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4535,460,0 chrXIV 318991 . A T 4475.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.80;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4475,454,0 chrXIV 321416 . A G 3707.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3707,382,0 chrXIV 322462 . A G 4220.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.82;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4220,442,0 chrXIV 323308 . G A 4801.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=22.2805;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.13;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,195:199:99:4801,478,0 chrXIV 323367 . C G 5190.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.8871;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.70;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:5190,541,0 chrXIV 323874 . C G 4433.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.4703;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.58;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:4433,457,0 chrXIV 324247 . G C 3079 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.0320;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.47;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3112,321,0 chrXIV 324447 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.30;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2549,252,0 chrXIV 328472 . T C 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=8.440;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-1.771;QD=21.02;ReadPosRankSum=2.389;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3426,355,0 chrXIV 328483 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.04;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3702,370,0 chrXIV 328670 . T C 5714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.053;DP=235;Dels=0.00;FS=5.040;HaplotypeScore=16.6521;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.263;QD=24.31;ReadPosRankSum=3.416;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:4,231:235:99:5714,589,0 chrXIV 329212 . T G 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.340;QD=23.16;ReadPosRankSum=1.699;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2488,261,0 chrXIV 329339 . A G 4109.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.95;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4109,406,0 chrXIV 329474 . T C 4797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=186;Dels=0.00;FS=2.653;HaplotypeScore=16.2967;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.746;QD=25.79;ReadPosRankSum=2.397;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4797,496,0 chrXIV 329719 . G C 5720.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=16.6304;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.73;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5720,586,0 chrXIV 330243 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=26.73;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3421,334,0 chrXIV 330284 . A T 2915 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.08;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2948,306,0 chrXIV 330285 . T G 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.013;QD=21.29;ReadPosRankSum=1.628;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2886,303,0 chrXIV 330365 . A G 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.951;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.292;QD=25.38;ReadPosRankSum=1.665;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3934,394,0 chrXIV 330395 . G A 4552.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=26.93;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4552,448,0 chrXIV 330503 . T C 4960.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.6635;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=24.43;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4960,508,0 chrXIV 330702 . T A 4692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=0.060;QD=23.34;ReadPosRankSum=1.698;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4692,469,0 chrXIV 330713 . G T 4275.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.59;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4275,421,0 chrXIV 330944 . G T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.01;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3499,358,0 chrXIV 331023 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.0888;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.401;QD=23.26;ReadPosRankSum=2.368;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:3,148:152:99:3535,369,0 chrXIV 331067 . G A 5384.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.1548;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.64;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5384,571,0 chrXIV 331401 . C T 3731.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.20;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3731,379,0 chrXIV 331411 . T C 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.1833;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.264;QD=20.41;ReadPosRankSum=1.673;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,177:182:99:3714,382,0 chrXIV 331752 . T A 4302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=3.306;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=1.525;QD=25.76;ReadPosRankSum=1.649;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4302,424,0 chrXIV 331884 . T C 5319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.073;QD=22.73;ReadPosRankSum=2.884;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:3,230:234:99:5319,535,0 chrXIV 332417 . T G 4811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.0248;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.575;QD=27.34;ReadPosRankSum=1.673;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4811,490,0 chrXIV 332987 . G A 4868.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.6927;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.75;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4868,493,0 chrXIV 333289 . G A 1264 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=199.4888;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;QD=4.39;SB=-4.093e+03 GT:AD:DP:GQ:PL 1/1:0,287:288:99:1297,132,0 chrXIV 333302 . A C 209.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383;DP=305;Dels=0.05;FS=1.174;HaplotypeScore=94.5812;MLEAC=1;MLEAF=0.500;MQ=34.54;MQ0=0;MQRankSum=-7.663;QD=0.69;ReadPosRankSum=-6.611;SB=-3.020e+02 GT:AD:DP:GQ:PL 0/1:238,53:291:99:239,0,677 chrXIV 333303 . T A 205.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.901;DP=306;Dels=0.05;FS=0.559;HaplotypeScore=98.6884;MLEAC=1;MLEAF=0.500;MQ=34.53;MQ0=0;MQRankSum=-6.551;QD=0.67;ReadPosRankSum=-7.733;SB=-3.600e+02 GT:AD:DP:GQ:PL 0/1:238,53:292:99:235,0,622 chrXIV 333310 . A G 126.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.121;DP=337;Dels=0.00;FS=23.202;HaplotypeScore=149.3171;MLEAC=1;MLEAF=0.500;MQ=34.71;MQ0=0;MQRankSum=-3.762;QD=0.37;ReadPosRankSum=-6.209;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:305,32:337:99:156,0,1199 chrXIV 333313 . A G 319.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.449;DP=347;Dels=0.00;FS=40.061;HaplotypeScore=133.9869;MLEAC=1;MLEAF=0.500;MQ=35.55;MQ0=0;MQRankSum=-1.465;QD=0.92;ReadPosRankSum=-5.432;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:303,42:347:99:349,0,1286 chrXIV 333328 . A G 1754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.816;DP=274;Dels=0.00;FS=6.667;HaplotypeScore=258.4801;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;MQRankSum=10.681;QD=6.40;ReadPosRankSum=-11.881;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:120,153:274:99:1787,183,0 chrXIV 333334 . G A 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;DP=263;Dels=0.00;FS=20.530;HaplotypeScore=246.3628;MLEAC=1;MLEAF=0.500;MQ=39.43;MQ0=0;MQRankSum=4.777;QD=0.06;ReadPosRankSum=-10.914;SB=-1.740e+02 GT:AD:DP:GQ:PL 0/1:207,56:263:46:46,0,1405 chrXIV 333367 . T C 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=222;Dels=0.00;FS=20.487;HaplotypeScore=4.6559;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;MQRankSum=-1.282;QD=13.76;ReadPosRankSum=3.389;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:4,218:222:99:3087,330,0 chrXIV 333373 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=17.13;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:3632,379,0 chrXIV 333469 . G A 4915.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.4224;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=23.08;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4915,493,0 chrXIV 333748 . A G 3992.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.80;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3992,420,0 chrXIV 333895 . C T 2354 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.65;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2387,243,0 chrXIV 333907 . G A 2445 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.04;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2478,255,0 chrXIV 334886 . C A 5884.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=17.3255;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,248:252:99:5884,622,0 chrXIV 335071 . C T 4383.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.3206;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.19;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4383,442,0 chrXIV 336941 . G A 5008.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=2.2460;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=19.64;SB=-3.408e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5008,529,0 chrXIV 336952 . A G 5185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=269;Dels=0.00;FS=3.278;HaplotypeScore=15.3707;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-1.228;QD=19.28;ReadPosRankSum=1.693;SB=-3.597e+03 GT:AD:DP:GQ:PL 1/1:1,267:269:99:5185,526,0 chrXIV 337051 . C T 6101.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=23.0825;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.85;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,232:236:99:6101,613,0 chrXIV 337166 . A G 5591.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.5528;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.75;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:5591,577,0 chrXIV 337563 . T C 4064.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4064,406,0 chrXIV 338243 . T C 5410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.714;DP=226;Dels=0.00;FS=10.934;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.567;QD=23.94;ReadPosRankSum=3.602;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:5,220:226:99:5410,547,0 chrXIV 338424 . G A 5331.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5331,526,0 chrXIV 340079 . A G 4545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=194;Dels=0.00;FS=5.799;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.526;QD=23.43;ReadPosRankSum=2.922;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:3,190:194:99:4545,466,0 chrXIV 340447 . G A 4926.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.52;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4926,505,0 chrXIV 341764 . G C 3750.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.73;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3750,393,0 chrXIV 345712 . A G 4192.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.7878;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.66;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4192,418,0 chrXIV 346115 . A T 4621.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.9225;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.76;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4621,472,0 chrXIV 347475 . C G 2433 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.01;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2466,252,0 chrXIV 347576 . A C 1269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.135;QD=21.88;ReadPosRankSum=1.673;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1302,132,0 chrXIV 347728 . A G 2162 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=27.37;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,78:79:99:2195,219,0 chrXIV 348697 . G C 3127 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3160,319,0 chrXIV 350676 . T C 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.239;DP=136;Dels=0.00;FS=14.171;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.547;QD=21.65;ReadPosRankSum=3.394;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:4,132:136:99:2978,303,0 chrXIV 350778 . G A 4143.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.0337;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4143,409,0 chrXIV 354131 . G C 3634.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.39;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3634,373,0 chrXIV 354477 . C G 3925.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.8276;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.09;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3925,400,0 chrXIV 356361 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.06;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3264,325,0 chrXIV 356370 . C T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.3536;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.42;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3431,337,0 chrXIV 356409 . T C 3747.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.0217;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.41;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3747,382,0 chrXIV 356637 . G T 4739.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.9255;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=25.76;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4739,487,0 chrXIV 357162 . T A 3005 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=26.36;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3038,295,0 chrXIV 357346 . C T 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.0675;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-1.417;QD=15.08;ReadPosRankSum=2.202;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:2596,329,0 chrXIV 357348 . T C 2480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.8349;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-2.060;QD=14.59;ReadPosRankSum=2.898;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:2513,320,0 chrXIV 358507 . G C 6738.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=12.8501;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=23.40;SB=-3.587e+03 GT:AD:DP:GQ:PL 1/1:0,283:288:99:6738,688,0 chrXIV 358519 . C G 6248.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=6.6852;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.00;SB=-3.381e+03 GT:AD:DP:GQ:PL 1/1:0,280:284:99:6248,652,0 chrXIV 358643 . A G 6171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=15.6529;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.471;QD=22.69;ReadPosRankSum=1.643;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:1,271:272:99:6171,643,0 chrXIV 358746 . T C 5464.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.2564;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=26.14;SB=-2.951e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5464,556,0 chrXIV 359017 . T A 488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=29;Dels=0.00;FS=20.187;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;MQRankSum=-1.540;QD=16.83;ReadPosRankSum=2.542;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:3,26:29:54:521,54,0 chrXIV 359047 . T C 1522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.980;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-1.353;QD=24.16;ReadPosRankSum=2.372;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1555,159,0 chrXIV 361529 . C A 3552.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.5806;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.34;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3552,352,0 chrXIV 361584 . A G 2714 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=17.74;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:2747,294,0 chrXIV 361589 . A G 3320.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5471;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=21.28;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3320,345,0 chrXIV 361814 . C A 4283.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.9297;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=25.96;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4283,427,0 chrXIV 362544 . C A 2697 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.87;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2730,279,0 chrXIV 362793 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.90;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2946,300,0 chrXIV 362945 . C T 2683 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2716,276,0 chrXIV 363496 . T C 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.708;QD=25.61;ReadPosRankSum=1.684;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3714,382,0 chrXIV 363861 . C T 3175 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8841;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.87;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3208,325,0 chrXIV 363993 . G T 2853 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=26.42;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2886,280,0 chrXIV 364019 . G A 2739 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.46;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2772,285,0 chrXIV 364966 . G A 4201.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.76;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4201,415,0 chrXIV 365714 . C T 5331.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.88;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:5331,526,0 chrXIV 366158 . G T 7485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=292;Dels=0.00;FS=3.071;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.636;QD=25.63;ReadPosRankSum=0.693;SB=-4.128e+03 GT:AD:DP:GQ:PL 1/1:1,289:292:99:7485,754,0 chrXIV 366458 . C A 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.201;DP=124;Dels=0.00;FS=3.375;HaplotypeScore=17.8629;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.537;QD=20.73;ReadPosRankSum=1.369;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2603,245,0 chrXIV 366581 . G T 4371.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=23.76;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4371,436,0 chrXIV 366593 . A C 4271.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.9031;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.79;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4271,436,0 chrXIV 366896 . C A 3918.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.6539;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.44;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3918,391,0 chrXIV 367094 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3605,378,0 chrXIV 367520 . A G 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=141;Dels=0.00;FS=8.888;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.026;QD=24.70;ReadPosRankSum=2.415;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3482,364,0 chrXIV 367843 . G A 3826.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3826,385,0 chrXIV 368183 . C T 4854.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4854,487,0 chrXIV 369029 . T A 2995 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3028,301,0 chrXIV 370084 . T C 4181.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.5184;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4181,427,0 chrXIV 370246 . G A 4987.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.71;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4987,520,0 chrXIV 370870 . C T 4655.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4655,466,0 chrXIV 371209 . A G 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=163;Dels=0.00;FS=4.198;HaplotypeScore=5.1145;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.180;QD=24.60;ReadPosRankSum=1.647;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4010,415,0 chrXIV 371336 . C G 4896.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.8863;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.90;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4896,499,0 chrXIV 371753 . A T 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.622;DP=104;Dels=0.00;FS=5.840;HaplotypeScore=10.1725;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.524;QD=23.37;ReadPosRankSum=2.835;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2464,228,0 chrXIV 372259 . C T 4421.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.03;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4421,439,0 chrXIV 372376 . G A 3714.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.72;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3714,376,0 chrXIV 372661 . T C 4223.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.72;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4223,447,0 chrXIV 373134 . A G 4482.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=14.7763;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.47;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4482,457,0 chrXIV 373632 . T A 61.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.220;DP=227;Dels=0.00;FS=18.802;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=1.524;QD=0.27;ReadPosRankSum=-6.480;SB=-1.865e+02 GT:AD:DP:GQ:PL 1/1:209,18:227:12:94,12,0 chrXIV 373766 . C A 7093.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=12.7771;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=27.07;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:7093,694,0 chrXIV 373799 . A G 7709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=287;Dels=0.00;FS=4.420;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.590;QD=26.86;ReadPosRankSum=1.708;SB=-2.961e+03 GT:AD:DP:GQ:PL 1/1:1,284:287:99:7709,796,0 chrXIV 374054 . G A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.4052;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=19.58;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3485,346,0 chrXIV 374078 . G C 2213 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.7841;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.94;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,106:111:99:2246,228,0 chrXIV 374659 . C T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.2730;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3513,355,0 chrXIV 376313 . C T 4261.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.4323;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=25.67;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4261,430,0 chrXIV 376490 . A G 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.214;QD=23.32;ReadPosRankSum=1.633;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4057,421,0 chrXIV 377578 . A G 3999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=-1.668;QD=24.53;ReadPosRankSum=1.689;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3999,400,0 chrXIV 377887 . G T 4551.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.3929;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.01;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4551,451,0 chrXIV 380619 . T A 2957 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=11.4273;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2990,298,0 chrXIV 381889 . G C 2695 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.72;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2728,285,0 chrXIV 383709 . A T 2554 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2587,267,0 chrXIV 385702 . A T 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=164;Dels=0.00;FS=2.928;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.895;QD=24.76;ReadPosRankSum=2.420;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:4061,412,0 chrXIV 387207 . G A 3032 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3065,304,0 chrXIV 388136 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.13;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2496,249,0 chrXIV 389873 . A T 2057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=85;Dels=0.00;FS=3.062;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.913;QD=24.20;ReadPosRankSum=2.392;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:2,83:85:99:2090,210,0 chrXIV 389979 . G T 3180 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=14.2792;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.44;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3213,322,0 chrXIV 390263 . G A 4522.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.12;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4522,460,0 chrXIV 390357 . A T 4466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=4.405;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.799;QD=24.54;ReadPosRankSum=1.694;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4466,445,0 chrXIV 390377 . G A 4255.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=24.31;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4255,436,0 chrXIV 390590 . G A 6410.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=25.24;SB=-3.644e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:6410,640,0 chrXIV 390614 . G C 5904.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.3657;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.34;SB=-3.345e+03 GT:AD:DP:GQ:PL 1/1:0,247:253:99:5904,622,0 chrXIV 390788 . C T 5269.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.86;SB=-3.116e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5269,541,0 chrXIV 390845 . G A 5932.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.41;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5932,595,0 chrXIV 390893 . C T 6404.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.31;SB=-3.300e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:6404,637,0 chrXIV 390954 . T C 6981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=279;Dels=0.00;FS=3.137;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.972;QD=25.02;ReadPosRankSum=1.720;SB=-3.578e+03 GT:AD:DP:GQ:PL 1/1:1,277:279:99:6981,727,0 chrXIV 391118 . G A 5773.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.28;SB=-3.328e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5773,586,0 chrXIV 391299 . G A 8268.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=19.4698;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=25.92;SB=-3.768e+03 GT:AD:DP:GQ:PL 1/1:0,318:319:99:8268,821,0 chrXIV 391358 . G C 7243.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=23.07;SB=-3.843e+03 GT:AD:DP:GQ:PL 1/1:0,309:314:99:7243,742,0 chrXIV 391364 . T C 7111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=321;Dels=0.00;FS=5.819;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-0.426;QD=22.15;ReadPosRankSum=2.953;SB=-3.877e+03 GT:AD:DP:GQ:PL 1/1:3,317:321:99:7111,736,0 chrXIV 391568 . G A 2847 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.8512;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=12.94;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:2880,300,0 chrXIV 391590 . T C 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=225;Dels=0.00;FS=5.354;HaplotypeScore=14.2296;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=0.722;QD=15.96;ReadPosRankSum=1.717;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:3591,372,0 chrXIV 391634 . G A 5557.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=12.9250;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.29;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5557,559,0 chrXIV 391752 . A G 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.732;DP=127;Dels=0.00;FS=11.218;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.699;QD=24.71;ReadPosRankSum=2.943;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:4,121:127:99:3171,322,0 chrXIV 391796 . G A 2443 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=18.10;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2476,270,0 chrXIV 391817 . T C 2267 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=16.67;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2300,246,0 chrXIV 391829 . G A 2324 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=16.37;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2357,237,0 chrXIV 391871 . A G 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=149;Dels=0.00;FS=2.797;HaplotypeScore=15.8187;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=0.978;QD=15.16;ReadPosRankSum=2.416;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:2292,240,0 chrXIV 391904 . G A 3186 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.55;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3219,328,0 chrXIV 391916 . C T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.5589;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.28;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3617,367,0 chrXIV 391961 . C T 4083.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=21.72;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4083,403,0 chrXIV 391970 . T C 3534.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=18.90;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3534,372,0 chrXIV 392063 . A G 2359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.164;DP=112;Dels=0.00;FS=2.882;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-0.758;QD=21.06;ReadPosRankSum=2.384;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2392,246,0 chrXIV 392076 . G C 2084 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=20.84;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2117,216,0 chrXIV 392155 . A T 3903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=1.081;QD=24.70;ReadPosRankSum=2.418;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3903,391,0 chrXIV 392468 . T G 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.413;DP=87;Dels=0.01;FS=90.127;HaplotypeScore=15.2280;MLEAC=1;MLEAF=0.500;MQ=58.12;MQ0=0;MQRankSum=2.288;QD=0.24;ReadPosRankSum=-0.542;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,41:86:51:51,0,337 chrXIV 392559 . A G 4494.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.7966;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=25.98;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4494,451,0 chrXIV 392589 . G A 3987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=4.380;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.294;QD=24.92;ReadPosRankSum=-0.142;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3987,397,0 chrXIV 392734 . A G 7179.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=26.39;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:0,267:272:99:7179,736,0 chrXIV 393022 . T C 4868.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=24.59;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4868,499,0 chrXIV 393050 . A G 3597.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=20.44;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3597,378,0 chrXIV 393053 . A C 3487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=3.212;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=-0.630;QD=19.81;ReadPosRankSum=1.712;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3487,355,0 chrXIV 393101 . T G 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=179;Dels=0.00;FS=3.615;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=0.049;QD=15.20;ReadPosRankSum=1.713;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:2754,282,0 chrXIV 393110 . C T 3114 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.0820;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=16.92;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:3147,313,0 chrXIV 393350 . T C 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=141;Dels=0.00;FS=10.217;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.500;QD=21.65;ReadPosRankSum=2.950;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:3,136:141:99:3086,313,0 chrXIV 393398 . T C 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.732;QD=22.23;ReadPosRankSum=1.707;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3168,327,0 chrXIV 393425 . C T 3374.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.1128;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.93;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3374,334,0 chrXIV 393703 . G A 6307.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=16.7156;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.13;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:6307,649,0 chrXIV 393812 . G A 8430.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=24.7065;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.47;SB=-4.582e+03 GT:AD:DP:GQ:PL 1/1:0,330:331:99:8430,845,0 chrXIV 393863 . C T 9481.01 filter AC=2;AF=1.00;AN=2;DP=363;Dels=0.00;FS=0.000;HaplotypeScore=24.7306;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=26.12;SB=-4.712e+03 GT:AD:DP:GQ:PL 1/1:0,361:363:99:9481,947,0 chrXIV 393905 . T C 9648.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.385;DP=385;Dels=0.00;FS=8.979;HaplotypeScore=26.8015;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.300;QD=25.06;ReadPosRankSum=3.266;SB=-5.122e+03 GT:AD:DP:GQ:PL 1/1:4,380:385:99:9648,974,0 chrXIV 394023 . C G 11235.01 filter AC=2;AF=1.00;AN=2;DP=456;Dels=0.00;FS=0.000;HaplotypeScore=30.2888;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.64;SB=-4.636e+03 GT:AD:DP:GQ:PL 1/1:0,449:456:99:11235,1172,0 chrXIV 394076 . G A 10689.01 filter AC=2;AF=1.00;AN=2;DP=448;Dels=0.00;FS=0.000;HaplotypeScore=34.4735;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.86;SB=-5.429e+03 GT:AD:DP:GQ:PL 1/1:0,445:448:99:10689,1091,0 chrXIV 394139 . G A 7993.01 filter AC=2;AF=1.00;AN=2;DP=379;Dels=0.00;FS=0.000;HaplotypeScore=12.7665;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=21.09;SB=-4.746e+03 GT:AD:DP:GQ:PL 1/1:0,377:379:99:7993,814,0 chrXIV 394161 . C T 6542.01 filter AC=2;AF=1.00;AN=2;DP=376;Dels=0.00;FS=0.000;HaplotypeScore=3.5394;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=17.40;SB=-5.029e+03 GT:AD:DP:GQ:PL 1/1:0,374:376:99:6542,655,0 chrXIV 394167 . A G 5470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.352;DP=350;Dels=0.00;FS=12.574;HaplotypeScore=7.5543;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=-0.142;QD=15.63;ReadPosRankSum=3.422;SB=-4.186e+03 GT:AD:DP:GQ:PL 1/1:4,345:350:99:5470,556,0 chrXIV 394187 . T C 5030.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=387;Dels=0.00;FS=4.008;HaplotypeScore=9.9784;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=0.616;QD=13.00;ReadPosRankSum=1.651;SB=-4.212e+03 GT:AD:DP:GQ:PL 1/1:1,386:387:99:5030,514,0 chrXIV 394241 . G A 6885.01 filter AC=2;AF=1.00;AN=2;DP=373;Dels=0.00;FS=0.000;HaplotypeScore=14.6587;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.46;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,372:373:99:6885,706,0 chrXIV 394392 . T C 3802.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=23.18;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3802,394,0 chrXIV 394440 . T C 2303 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=25.03;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2336,234,0 chrXIV 394558 . A T 947 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.15;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:980,99,0 chrXIV 395169 . A G 5069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=228;Dels=0.00;FS=2.555;HaplotypeScore=15.3718;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.213;QD=22.23;ReadPosRankSum=2.916;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:3,223:228:99:5069,514,0 chrXIV 395338 . T C 3773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.230;HaplotypeScore=7.3316;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.005;QD=23.15;ReadPosRankSum=1.647;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3773,391,0 chrXIV 395542 . G A 4463.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.61;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4463,445,0 chrXIV 395701 . A G 4482.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.8032;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4482,454,0 chrXIV 395734 . A G 4868.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4868,502,0 chrXIV 395841 . C T 4439.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.96;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4439,430,0 chrXIV 396544 . C T 4268.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.07;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4268,430,0 chrXIV 396569 . T C 4602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.295;DP=192;Dels=0.00;FS=12.273;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-1.367;QD=23.97;ReadPosRankSum=3.396;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:4,187:192:99:4602,469,0 chrXIV 396664 . A G 5544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.445;QD=24.00;ReadPosRankSum=1.687;SB=-3.054e+03 GT:AD:DP:GQ:PL 1/1:1,228:231:99:5544,556,0 chrXIV 396730 . G A 3960.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.6664;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3960,397,0 chrXIV 396880 . T C 4152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=173;Dels=0.00;FS=8.341;HaplotypeScore=21.3081;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.766;QD=24.00;ReadPosRankSum=2.362;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:2,167:173:99:4152,435,0 chrXIV 398211 . A G 4212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=178;Dels=0.00;FS=2.568;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.257;QD=23.66;ReadPosRankSum=2.903;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:3,173:178:99:4212,427,0 chrXIV 398280 . A G 2487 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3919;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.82;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2520,261,0 chrXIV 398341 . T C 1956 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=21.26;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1989,198,0 chrXIV 398440 . T C 1824 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.65;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1857,186,0 chrXIV 398505 . A G 561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.846;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=18.2741;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=1.180;QD=13.68;ReadPosRankSum=2.330;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:63:594,63,0 chrXIV 398753 . C T 2877 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=26.15;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2910,283,0 chrXIV 398966 . A G 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=131;Dels=0.00;FS=6.121;HaplotypeScore=9.1718;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.385;QD=24.11;ReadPosRankSum=2.412;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3191,330,0 chrXIV 399956 . T G 4621.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.5585;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4621,481,0 chrXIV 400003 . G A 3697.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.25;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3697,370,0 chrXIV 400049 . T C 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=125;Dels=0.00;FS=11.218;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.130;QD=22.46;ReadPosRankSum=2.943;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2840,297,0 chrXIV 400328 . A G 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=148;Dels=0.00;FS=13.509;HaplotypeScore=10.0278;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.539;QD=25.03;ReadPosRankSum=2.908;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:3,140:148:99:3705,367,0 chrXIV 401251 . A T 4196.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.56;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4196,421,0 chrXIV 401891 . C T 2993 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.94;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3026,307,0 chrXIV 402101 . G A 4049.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.64;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:4049,409,0 chrXIV 402194 . A T 3652.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=25.19;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3652,373,0 chrXIV 402308 . C T 5067.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.72;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5067,520,0 chrXIV 402455 . C T 3060 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.86;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3093,315,0 chrXIV 402461 . A C 3040 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.82;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3073,315,0 chrXIV 402769 . A G 2959 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.12;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2992,306,0 chrXIV 402781 . T C 3138 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.41;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3171,324,0 chrXIV 402971 . A G 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=176;Dels=0.00;FS=3.772;HaplotypeScore=13.7102;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=1.374;QD=23.10;ReadPosRankSum=1.652;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:4065,429,0 chrXIV 403003 . C T 4145.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.10;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4145,424,0 chrXIV 403093 . A T 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=3.617;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-0.656;QD=19.60;ReadPosRankSum=1.668;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3189,322,0 chrXIV 403098 . A G 3378.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=20.98;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3378,340,0 chrXIV 403146 . T C 3890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.385;DP=188;Dels=0.00;FS=9.145;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=-0.766;QD=20.69;ReadPosRankSum=3.330;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:4,184:188:99:3890,400,0 chrXIV 403153 . T C 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.4811;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.577;QD=18.81;ReadPosRankSum=1.697;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:3744,379,0 chrXIV 403294 . T C 4065.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.8193;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.77;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4065,421,0 chrXIV 403450 . T C 3604.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.5355;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.40;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3604,376,0 chrXIV 403835 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.96;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3269,328,0 chrXIV 403844 . T C 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.404;DP=162;Dels=0.00;FS=8.964;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-0.456;QD=19.64;ReadPosRankSum=3.305;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:4,155:162:99:3215,328,0 chrXIV 403864 . A T 3698.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.89;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3698,364,0 chrXIV 404000 . C T 5019.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.87;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5019,490,0 chrXIV 404051 . A G 4521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=0.303;QD=25.40;ReadPosRankSum=1.693;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4521,478,0 chrXIV 404479 . C T 5856.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.00;SB=-3.263e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5856,589,0 chrXIV 404620 . C T 4801.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=16.5911;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=24.88;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4801,478,0 chrXIV 404770 . C T 3218.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.31;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3251,325,0 chrXIV 404941 . C T 2011 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.34;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2044,204,0 chrXIV 404995 . A G 1890 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=25.54;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1923,192,0 chrXIV 405028 . T A 1612 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.70;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1645,162,0 chrXIV 405043 . A C 1608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=78;Dels=0.00;FS=3.606;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=0.044;QD=20.62;ReadPosRankSum=1.688;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1641,165,0 chrXIV 405756 . A T 3700.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=25.87;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3700,379,0 chrXIV 405795 . A C 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;MQRankSum=-1.347;QD=20.53;ReadPosRankSum=1.643;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2476,252,0 chrXIV 405802 . C T 2292 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=19.59;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2325,246,0 chrXIV 405841 . T A 2222 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=18.07;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2255,237,0 chrXIV 405847 . T C 2240 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=17.92;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2273,246,0 chrXIV 405849 . T C 2417 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=17.90;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2450,246,0 chrXIV 405961 . A T 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=137;Dels=0.00;FS=3.039;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.768;QD=19.92;ReadPosRankSum=2.269;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2762,279,0 chrXIV 406068 . G A 2813 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=21.47;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2846,288,0 chrXIV 406074 . C T 2847 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=21.57;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2880,291,0 chrXIV 406133 . A G 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=143;Dels=0.00;FS=6.885;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-1.109;QD=20.01;ReadPosRankSum=2.364;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2894,292,0 chrXIV 406202 . T C 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-0.619;QD=24.81;ReadPosRankSum=1.690;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4094,415,0 chrXIV 406273 . C T 836 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.01;FS=0.000;HaplotypeScore=6.0208;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=4.27;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:869,111,0 chrXIV 406274 . T C 744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=194;Dels=0.00;FS=3.613;HaplotypeScore=5.2321;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.422;QD=3.84;ReadPosRankSum=1.642;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:777,99,0 chrXIV 406753 . A T 4490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=4.295;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.591;QD=27.21;ReadPosRankSum=1.711;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4490,445,0 chrXIV 406783 . A G 4303.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.92;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4303,430,0 chrXIV 407114 . A T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.32;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3568,361,0 chrXIV 407152 . T G 3544.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8174;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3544,367,0 chrXIV 407285 . A G 4522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=3.787;HaplotypeScore=15.3956;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.634;QD=25.40;ReadPosRankSum=1.693;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4522,454,0 chrXIV 407338 . C T 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.5651;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.240;QD=24.28;ReadPosRankSum=0.663;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3934,397,0 chrXIV 408124 . T C 4400.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=25.43;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4400,442,0 chrXIV 408377 . A G 6542.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=15.0907;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.53;SB=-2.966e+03 GT:AD:DP:GQ:PL 1/1:0,275:278:99:6542,676,0 chrXIV 408505 . G A 5769.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.76;SB=-3.357e+03 GT:AD:DP:GQ:PL 1/1:0,290:292:99:5769,580,0 chrXIV 408508 . G A 5567.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.74;SB=-3.426e+03 GT:AD:DP:GQ:PL 1/1:0,295:297:99:5567,571,0 chrXIV 408672 . G A 7043.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=33.6001;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.17;SB=-3.421e+03 GT:AD:DP:GQ:PL 1/1:0,304:304:99:7043,706,0 chrXIV 408786 . C T 6755.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=27.4521;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.18;SB=-3.436e+03 GT:AD:DP:GQ:PL 1/1:0,316:319:99:6755,694,0 chrXIV 408945 . T C 5718.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=16.1038;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5718,577,0 chrXIV 409114 . G A 4835.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=22.9528;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4835,481,0 chrXIV 409315 . T G 5192.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.61;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:5192,544,0 chrXIV 409622 . A G 4915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=195;Dels=0.00;FS=8.130;HaplotypeScore=15.3481;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.846;QD=25.21;ReadPosRankSum=2.399;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:2,191:195:99:4915,526,0 chrXIV 409919 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3300,334,0 chrXIV 410245 . G A 3315.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.10;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3315,342,0 chrXIV 410737 . A G 5725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.349;DP=268;Dels=0.00;FS=8.879;HaplotypeScore=8.7101;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.439;QD=21.36;ReadPosRankSum=3.382;SB=-3.333e+03 GT:AD:DP:GQ:PL 1/1:4,261:268:99:5725,592,0 chrXIV 410746 . G A 5878.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=3.9722;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.77;SB=-3.533e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:5878,604,0 chrXIV 410941 . A G 6222.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.3738;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.09;SB=-3.420e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:6222,625,0 chrXIV 411040 . G A 3599.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.3937;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.68;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3599,364,0 chrXIV 411353 . T C 2468 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.2277;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2501,261,0 chrXIV 411667 . T A 2808 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=27.00;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2841,283,0 chrXIV 411928 . G A 3768.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=24.00;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3768,382,0 chrXIV 411943 . G C 3474.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.47;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3474,358,0 chrXIV 412014 . C T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.6052;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.24;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3439,346,0 chrXIV 412273 . G A 4000.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.39;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4000,391,0 chrXIV 412369 . A T 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;MQRankSum=-0.306;QD=19.78;ReadPosRankSum=1.714;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3698,384,0 chrXIV 412406 . C T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.8266;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=18.41;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:3866,385,0 chrXIV 412417 . G A 3699.01 SnpCluster AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=19.37;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3699,373,0 chrXIV 412424 . G A 3351.01 SnpCluster AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=18.11;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3351,348,0 chrXIV 412425 . G A 3415.01 SnpCluster AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=18.56;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3415,349,0 chrXIV 412570 . T C 2989 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7852;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=21.66;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3022,312,0 chrXIV 412585 . C G 2706 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=20.19;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2739,291,0 chrXIV 412586 . A G 2459 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=18.63;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2492,282,0 chrXIV 412587 . T A 2496 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=133;Dels=0.00;FS=2.988;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;MQRankSum=-0.324;QD=18.77;ReadPosRankSum=2.394;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2529,285,0 chrXIV 412736 . C T 4667.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=25.09;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4667,481,0 chrXIV 412763 . C T 4873.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=26.06;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4873,478,0 chrXIV 413103 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.98;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3497,366,0 chrXIV 413294 . C T 1655 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.64;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1688,165,0 chrXIV 413314 . T C 1531 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.85;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1564,162,0 chrXIV 413686 . G T 2997 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=26.76;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3030,298,0 chrXIV 414010 . T C 5582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.288;DP=233;Dels=0.00;FS=8.122;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-1.492;QD=23.96;ReadPosRankSum=3.423;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:4,228:233:99:5582,574,0 chrXIV 414025 . G A 5276.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=24.54;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5276,523,0 chrXIV 414277 . C T 4209.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.19;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4209,430,0 chrXIV 414427 . C T 5040.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=16.0573;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.67;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:5040,493,0 chrXIV 414682 . G A 4497.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.06;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4497,466,0 chrXIV 414951 . T A 1268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.732;QD=18.11;ReadPosRankSum=0.940;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1301,132,0 chrXIV 414981 . T C 1641 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.77;SB=-6.701e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1674,171,0 chrXIV 415101 . T C 199.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;DP=30;Dels=0.00;FS=7.782;HaplotypeScore=12.6276;MLEAC=1;MLEAF=0.500;MQ=55.21;MQ0=0;MQRankSum=1.614;QD=6.64;ReadPosRankSum=0.167;SB=-5.855e-02 GT:AD:DP:GQ:PL 0/1:5,25:30:16:229,0,16 chrXIV 415125 . C A 1227 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.60;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1260,135,0 chrXIV 415134 . A G 1363 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=23.10;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1396,147,0 chrXIV 415261 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=27.38;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1539,150,0 chrXIV 417421 . C T 854 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,37:38:90:887,90,0 chrXIV 418267 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.99;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3498,355,0 chrXIV 418300 . T C 3856.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.88;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3856,394,0 chrXIV 418767 . G A 1556 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.94;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1589,159,0 chrXIV 419633 . G A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3776,396,0 chrXIV 420063 . T C 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.177;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.456;QD=25.75;ReadPosRankSum=1.680;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3451,352,0 chrXIV 423311 . A G 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=120;Dels=0.00;FS=2.969;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.072;QD=25.83;ReadPosRankSum=2.409;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:3133,319,0 chrXIV 424847 . G A 988 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:99:1021,105,0 chrXIV 427278 . A G 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.807;QD=21.42;ReadPosRankSum=1.698;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,205:210:99:4498,472,0 chrXIV 427447 . G C 5771.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=7.9826;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.94;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:5771,595,0 chrXIV 427451 . A G 5352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=264;Dels=0.00;FS=5.811;HaplotypeScore=9.9410;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-1.455;QD=20.27;ReadPosRankSum=1.719;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,262:264:99:5352,562,0 chrXIV 428693 . C T 6557.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=22.08;SB=-3.206e+03 GT:AD:DP:GQ:PL 1/1:0,295:297:99:6557,676,0 chrXIV 431063 . T C 4353.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.98;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4353,451,0 chrXIV 432578 . A G 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=157;Dels=0.00;FS=5.800;HaplotypeScore=10.5682;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.600;QD=26.11;ReadPosRankSum=2.955;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:4099,415,0 chrXIV 433148 . G A 4225.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.9837;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4225,424,0 chrXIV 435739 . A G 4083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=3.688;HaplotypeScore=8.1349;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.230;QD=24.60;ReadPosRankSum=1.690;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4083,418,0 chrXIV 437533 . A T 4373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=4.694;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.577;QD=26.03;ReadPosRankSum=1.691;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4373,436,0 chrXIV 437581 . G A 4237.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.34;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4237,421,0 chrXIV 439552 . C A 1680 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.25;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1713,168,0 chrXIV 441787 . C T 7319.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=18.4149;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.45;SB=-4.277e+03 GT:AD:DP:GQ:PL 1/1:0,325:326:99:7319,742,0 chrXIV 442265 . G A 5897.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=16.7547;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=25.20;SB=-3.083e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5897,577,0 chrXIV 442390 . C A 4097.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.5656;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=24.10;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4097,400,0 chrXIV 442392 . G A 4004.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=5.2996;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=23.14;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4004,406,0 chrXIV 442518 . G A 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-0.593;QD=21.42;ReadPosRankSum=-1.104;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3246,339,0 chrXIV 442648 . T A 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=149;Dels=0.00;FS=5.455;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;MQRankSum=0.871;QD=19.89;ReadPosRankSum=2.898;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:2997,306,0 chrXIV 442653 . A G 2796 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=19.15;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2829,294,0 chrXIV 442660 . G A 2680 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=17.63;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:2713,279,0 chrXIV 442665 . T C 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;MQRankSum=-1.575;QD=17.06;ReadPosRankSum=1.687;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2661,273,0 chrXIV 442716 . C T 2870 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=18.40;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2903,291,0 chrXIV 442736 . C A 4338.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=22.25;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4338,433,0 chrXIV 445766 . G A 5387.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.7954;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.94;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5387,547,0 chrXIV 445983 . T C 5680.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.5909;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.27;SB=-3.043e+03 GT:AD:DP:GQ:PL 1/1:0,230:234:99:5680,598,0 chrXIV 446677 . G C 3619.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=16.4855;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.34;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,155:162:99:3619,373,0 chrXIV 447324 . C T 6427.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=17.6410;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.46;SB=-3.848e+03 GT:AD:DP:GQ:PL 1/1:0,272:274:99:6427,646,0 chrXIV 447382 . G T 5929.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.3452;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-3.198e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5929,586,0 chrXIV 447754 . G T 4831.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=21.5950;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4831,484,0 chrXIV 448975 . C G 7234.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.65;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,278:282:99:7234,763,0 chrXIV 449114 . G A 6990.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=11.6337;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.14;SB=-3.692e+03 GT:AD:DP:GQ:PL 1/1:0,277:278:99:6990,730,0 chrXIV 449640 . A G 2778 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.25;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2811,291,0 chrXIV 453505 . A T 5172.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=13.0944;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.40;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5172,526,0 chrXIV 453937 . C T 7052.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=10.7527;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.93;SB=-3.498e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:7052,685,0 chrXIV 456179 . C T 4613.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.66;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4613,463,0 chrXIV 456295 . T C 3787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=177;Dels=0.00;FS=4.924;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.816;QD=21.40;ReadPosRankSum=1.633;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:3787,379,0 chrXIV 456437 . A G 4202.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.26;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4202,421,0 chrXIV 457545 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.50;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2247,222,0 chrXIV 458186 . A T 3882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.377;QD=24.73;ReadPosRankSum=1.710;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3882,397,0 chrXIV 459665 . G A 3176 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.5184;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.41;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3209,327,0 chrXIV 460625 . T C 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=3.194;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.532;QD=25.62;ReadPosRankSum=1.703;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3159,328,0 chrXIV 462234 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.24;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3163,322,0 chrXIV 463554 . A T 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=140;Dels=0.00;FS=6.435;HaplotypeScore=10.5509;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.465;QD=25.81;ReadPosRankSum=2.397;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3614,355,0 chrXIV 463775 . C T 3095 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6007;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.45;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3128,316,0 chrXIV 463940 . T A 3725.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.0350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.39;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3725,373,0 chrXIV 463992 . C G 2824 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.93;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,114:118:99:2857,297,0 chrXIV 466583 . C T 5658.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=23.09;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5658,568,0 chrXIV 466588 . T G 5685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=247;Dels=0.00;FS=3.979;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-1.562;QD=23.02;ReadPosRankSum=1.718;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:1,244:247:99:5685,583,0 chrXIV 467028 . A G 2370 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.55;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2403,240,0 chrXIV 467219 . A G 2962 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.10;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2995,304,0 chrXIV 468051 . C T 4566.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=26.39;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4566,454,0 chrXIV 468488 . A G 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.472;QD=24.27;ReadPosRankSum=1.680;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3237,328,0 chrXIV 469677 . A T 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.4472;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.077;QD=22.64;ReadPosRankSum=1.694;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2071,216,0 chrXIV 470301 . C T 4452.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=25.44;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4452,439,0 chrXIV 470330 . C T 4332.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.1456;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.93;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4332,436,0 chrXIV 470440 . T C 2826 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.2814;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.36;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2859,291,0 chrXIV 470844 . A G 2478 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2511,255,0 chrXIV 472579 . G T 47.27 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.423;DP=174;Dels=0.00;FS=10.708;HaplotypeScore=150.5137;MLEAC=1;MLEAF=0.500;MQ=49.48;MQ0=2;MQRankSum=1.629;QD=0.27;ReadPosRankSum=-5.499;SB=-1.553e+02 GT:AD:DP:GQ:PL 0/1:160,13:174:9:77,0,9 chrXIV 472584 . G C 128.06 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=146.7346;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=2;QD=0.73;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:21:161,21,0 chrXIV 472613 . C T 3907.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.8714;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=2;QD=19.73;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3907,397,0 chrXIV 473303 . T C 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.304;QD=24.18;ReadPosRankSum=1.641;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2790,288,0 chrXIV 473648 . T C 3721.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.55;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3721,388,0 chrXIV 476037 . T C 4024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=175;Dels=0.00;FS=7.822;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.021;QD=22.99;ReadPosRankSum=2.407;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:4024,424,0 chrXIV 480527 . A C 5500.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=15.7422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-3.149e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5500,574,0 chrXIV 481070 . T A 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=152;Dels=0.00;FS=3.038;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.461;QD=22.61;ReadPosRankSum=2.401;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3437,346,0 chrXIV 481081 . C T 3386.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=21.71;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3386,334,0 chrXIV 481317 . A G 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=184;Dels=0.00;FS=5.832;HaplotypeScore=14.5636;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-1.501;QD=20.79;ReadPosRankSum=1.501;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3825,373,0 chrXIV 482161 . A T 3978.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.83;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3978,394,0 chrXIV 483243 . A G 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=17.5521;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.826;QD=23.72;ReadPosRankSum=1.712;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:1,171:175:99:4151,427,0 chrXIV 484904 . A G 5761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=237;Dels=0.00;FS=3.517;HaplotypeScore=15.9844;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.308;QD=24.31;ReadPosRankSum=1.717;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:5761,583,0 chrXIV 485549 . T C 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.165;QD=24.19;ReadPosRankSum=1.650;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3105,324,0 chrXIV 486859 . T A 5940.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=28.56;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5940,580,0 chrXIV 487250 . G C 5569.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.52;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5569,559,0 chrXIV 487818 . C T 9278.01 filter AC=2;AF=1.00;AN=2;DP=389;Dels=0.00;FS=0.000;HaplotypeScore=21.4635;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.85;SB=-4.505e+03 GT:AD:DP:GQ:PL 1/1:0,389:389:99:9278,917,0 chrXIV 487935 . C T 6671.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=10.7060;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.83;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,277:280:99:6671,670,0 chrXIV 488598 . G C 5661.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.83;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,245:248:99:5661,577,0 chrXIV 489876 . C T 6692.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.94;SB=-3.463e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:6692,664,0 chrXIV 492375 . A G 7482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.669;DP=319;Dels=0.00;FS=26.691;HaplotypeScore=15.2573;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.528;QD=23.45;ReadPosRankSum=4.807;SB=-3.973e+03 GT:AD:DP:GQ:PL 1/1:8,307:319:99:7482,781,0 chrXIV 494911 . T C 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=109;Dels=0.00;FS=5.484;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.213;QD=23.30;ReadPosRankSum=2.880;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2573,264,0 chrXIV 495918 . C T 5270.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.6070;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.83;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5270,523,0 chrXIV 497303 . C G 4652.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.80;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4652,481,0 chrXIV 498514 . T C 3750.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.29;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3750,391,0 chrXIV 499188 . A G 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=149;Dels=0.00;FS=11.074;HaplotypeScore=14.7142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.377;QD=26.12;ReadPosRankSum=2.400;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3892,406,0 chrXIV 499614 . G A 4164.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.9890;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=24.35;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4164,438,0 chrXIV 500387 . A G 3435.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.85;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3435,349,0 chrXIV 500579 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=24.19;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3459,355,0 chrXIV 500621 . T G 3466.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=24.76;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3466,360,0 chrXIV 500627 . T G 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.259;QD=24.31;ReadPosRankSum=1.706;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3282,342,0 chrXIV 500652 . T A 2751 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=23.51;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2784,279,0 chrXIV 500701 . T C 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-0.014;QD=23.10;ReadPosRankSum=1.705;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2967,303,0 chrXIV 500721 . T C 2973 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=21.54;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3006,315,0 chrXIV 500742 . T C 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.01;FS=3.108;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=0.552;QD=21.51;ReadPosRankSum=1.706;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2959,295,0 chrXIV 500767 . A G 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=146;Dels=0.00;FS=2.781;HaplotypeScore=115.3928;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=-0.513;QD=19.97;ReadPosRankSum=2.349;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2949,318,0 chrXIV 501214 . A G 2985 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.61;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3018,312,0 chrXIV 501247 . C T 2822 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=5.1605;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.97;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2855,286,0 chrXIV 501338 . C G 2866 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.11;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2899,300,0 chrXIV 501452 . T C 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=100;Dels=0.00;FS=6.608;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-1.465;QD=23.23;ReadPosRankSum=2.401;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2356,249,0 chrXIV 501463 . C A 2527 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.56;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2560,250,0 chrXIV 501546 . C T 4464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.6950;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.228;QD=24.53;ReadPosRankSum=1.123;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4464,454,0 chrXIV 501563 . A G 4250.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.79;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4250,448,0 chrXIV 501765 . C T 5323.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.46;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5323,523,0 chrXIV 501824 . C A 6180.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=17.5570;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.59;SB=-3.537e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:6180,619,0 chrXIV 501883 . T C 4982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.667;QD=23.17;ReadPosRankSum=1.667;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4982,517,0 chrXIV 502079 . G A 7769.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=17.5299;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.31;SB=-3.263e+03 GT:AD:DP:GQ:PL 1/1:0,306:307:99:7769,826,0 chrXIV 502322 . A G 6684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=307;Dels=0.00;FS=2.961;HaplotypeScore=28.6685;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.680;QD=21.77;ReadPosRankSum=2.425;SB=-3.565e+03 GT:AD:DP:GQ:PL 1/1:2,305:307:99:6684,706,0 chrXIV 502486 . C T 5054.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=12.7867;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=19.22;SB=-3.038e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:5054,514,0 chrXIV 502498 . C T 4839.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=18.54;SB=-3.388e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:4839,490,0 chrXIV 502729 . T C 4429.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=24.61;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4429,469,0 chrXIV 502885 . A G 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=106;Dels=0.03;FS=0.000;HaplotypeScore=29.9340;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.562;QD=19.59;ReadPosRankSum=2.402;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2110,222,0 chrXIV 502975 . C T 1488 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=20.8298;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.88;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1521,153,0 chrXIV 503187 . G A 3076 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.9853;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=26.07;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:3109,313,0 chrXIV 503261 . A G 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=5.088;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-0.293;QD=25.45;ReadPosRankSum=1.708;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3614,373,0 chrXIV 503445 . G A 4073.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.68;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4073,406,0 chrXIV 503520 . T C 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=3.827;HaplotypeScore=8.4006;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.287;QD=22.36;ReadPosRankSum=1.633;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3163,322,0 chrXIV 503659 . C T 3299.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=24.80;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3299,337,0 chrXIV 503888 . T C 2278 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;QD=15.82;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2311,246,0 chrXIV 503986 . A G 1731 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=11.54;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:1764,183,0 chrXIV 504614 . A G 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=158;Dels=0.00;FS=3.038;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.148;QD=25.77;ReadPosRankSum=2.372;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:4071,403,0 chrXIV 504653 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.02;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3603,370,0 chrXIV 504677 . G A 3715.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.81;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,151:156:99:3715,370,0 chrXIV 504830 . G A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.85;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4076,415,0 chrXIV 505410 . C T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.6302;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.45;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3330,340,0 chrXIV 505441 . C A 2637 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.13;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2670,267,0 chrXIV 506144 . A G 5388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=218;Dels=0.00;FS=3.871;HaplotypeScore=14.4813;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.455;QD=24.72;ReadPosRankSum=1.700;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:5388,541,0 chrXIV 506920 . G A 3441.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3441,340,0 chrXIV 507053 . T G 3483.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=23.69;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3483,358,0 chrXIV 507058 . G A 3477.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.49;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3477,340,0 chrXIV 507430 . G T 1982 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=15.61;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2015,198,0 chrXIV 507431 . A T 1972 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=126;Dels=0.00;FS=6.123;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;MQRankSum=-0.800;QD=15.65;ReadPosRankSum=2.944;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2005,198,0 chrXIV 507432 . A T 1986 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.114;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=0.014;QD=15.64;ReadPosRankSum=1.678;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2019,198,0 chrXIV 507433 . A C 1921 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=15.13;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1954,201,0 chrXIV 507547 . A G 4484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=4.217;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.359;QD=26.53;ReadPosRankSum=1.671;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4484,466,0 chrXIV 508757 . C T 1737 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2880;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.72;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1770,177,0 chrXIV 509173 . C A 3061 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.02;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3094,313,0 chrXIV 509580 . G T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.67;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3550,364,0 chrXIV 509647 . T C 3944.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3944,397,0 chrXIV 510286 . T G 2489 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.27;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2522,255,0 chrXIV 511616 . G A 4606.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.0741;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4606,475,0 chrXIV 511916 . C T 5427.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=13.4688;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.71;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5427,562,0 chrXIV 513243 . T C 5543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=225;Dels=0.00;FS=10.345;HaplotypeScore=13.8663;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.073;QD=24.64;ReadPosRankSum=2.886;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:3,217:225:99:5543,556,0 chrXIV 513525 . A G 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.098;QD=25.34;ReadPosRankSum=1.709;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3927,394,0 chrXIV 513630 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.95;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3520,349,0 chrXIV 513783 . G A 3836.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.53;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3836,379,0 chrXIV 513927 . A G 4017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=161;Dels=0.00;FS=7.396;HaplotypeScore=15.1929;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.481;QD=24.95;ReadPosRankSum=2.404;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:4017,409,0 chrXIV 514134 . C T 5138.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6186;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=26.62;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:5138,505,0 chrXIV 515028 . C T 4877.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.14;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4877,499,0 chrXIV 515081 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.77;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:4065,403,0 chrXIV 515089 . C T 3976.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=24.39;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3976,394,0 chrXIV 515393 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.65;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3500,358,0 chrXIV 515478 . C A 3201 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.61;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3234,322,0 chrXIV 515537 . C T 2145 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.06;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,89:93:99:2178,225,0 chrXIV 515602 . C T 2492 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.96;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2525,252,0 chrXIV 516034 . A G 4048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=194;Dels=0.00;FS=2.953;HaplotypeScore=17.3916;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;MQRankSum=-0.019;QD=20.87;ReadPosRankSum=2.360;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:2,190:194:99:4048,415,0 chrXIV 516139 . T C 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=157;Dels=0.00;FS=2.986;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.404;QD=24.43;ReadPosRankSum=2.307;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:3836,391,0 chrXIV 516909 . C T 1586 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.67;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1619,168,0 chrXIV 517269 . A G 2806 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2839,300,0 chrXIV 517423 . C T 4398.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.1926;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.90;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4398,439,0 chrXIV 517634 . G A 4872.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.8086;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.36;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4872,502,0 chrXIV 517970 . C T 997 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.21;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1030,108,0 chrXIV 518602 . G T 4994.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.5774;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.72;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4994,499,0 chrXIV 518686 . G A 6920.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=15.9296;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.44;SB=-3.621e+03 GT:AD:DP:GQ:PL 1/1:0,269:272:99:6920,682,0 chrXIV 519164 . G C 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.03;MQ0=1;QD=1.55;SB=-3.026e+01 GT:AD:DP:GQ:PL 1/1:1,5:9:6:45,6,0 chrXIV 519165 . T A 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=1;QD=1.74;SB=-3.026e+01 GT:AD:DP:GQ:PL 1/1:1,5:8:6:45,6,0 chrXIV 519166 . T C 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=1;QD=2.97;SB=-2.926e+01 GT:AD:DP:GQ:PL 1/1:1,5:6:6:49,6,0 chrXIV 525219 . A G 5358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=226;Dels=0.00;FS=3.027;HaplotypeScore=13.9668;MLEAC=2;MLEAF=1.00;MQ=39.33;MQ0=0;MQRankSum=0.181;QD=23.71;ReadPosRankSum=2.373;SB=-3.026e+03 GT:AD:DP:GQ:PL 1/1:2,222:226:99:5358,559,0 chrXIV 525453 . A G 4113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.971;DP=241;Dels=0.00;FS=10.404;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;MQRankSum=-1.813;QD=17.07;ReadPosRankSum=2.888;SB=-3.113e+03 GT:AD:DP:GQ:PL 1/1:3,238:241:99:4113,424,0 chrXIV 525472 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=195.6063;MLEAC=2;MLEAF=1.00;MQ=34.57;MQ0=0;QD=13.41;SB=-2.950e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:2957,295,0 chrXIV 525484 . C T 2579 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.29;MQ0=0;QD=11.88;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:2612,261,0 chrXIV 525522 . T C 2307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=178;Dels=0.00;FS=3.366;HaplotypeScore=5.8750;MLEAC=2;MLEAF=1.00;MQ=33.23;MQ0=0;MQRankSum=0.136;QD=12.96;ReadPosRankSum=1.713;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:2340,234,0 chrXIV 525575 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=193;Dels=0.00;FS=3.033;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;MQRankSum=-1.644;QD=17.88;ReadPosRankSum=2.194;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:3450,352,0 chrXIV 525960 . T C 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=178;Dels=0.00;FS=10.347;HaplotypeScore=11.4424;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.260;QD=22.10;ReadPosRankSum=2.893;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:3933,394,0 chrXIV 527014 . A T 4847.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.7868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.98;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4847,475,0 chrXIV 527275 . C T 5254.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.25;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5254,517,0 chrXIV 527794 . C T 4746.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.8844;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.15;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4746,487,0 chrXIV 528047 . T C 4045.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.7579;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.08;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4045,418,0 chrXIV 528195 . C T 4542.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.23;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4542,454,0 chrXIV 529082 . C T 4860.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=15.5173;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.99;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4860,484,0 chrXIV 529136 . A G 5849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.678;DP=234;Dels=0.00;FS=2.458;HaplotypeScore=17.8035;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.506;QD=25.00;ReadPosRankSum=1.854;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:3,231:234:99:5849,616,0 chrXIV 532649 . A C 2779 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2812,291,0 chrXIV 532790 . T A 4126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.250;QD=24.71;ReadPosRankSum=1.669;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4126,427,0 chrXIV 533282 . A G 3019 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3052,310,0 chrXIV 533533 . A G 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.483;QD=23.64;ReadPosRankSum=2.221;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3451,355,0 chrXIV 534210 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=26.50;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3268,331,0 chrXIV 534251 . G C 2409 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0258;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.84;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2442,255,0 chrXIV 534949 . C T 3103 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.63;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3136,316,0 chrXIV 536942 . T C 4691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=198;Dels=0.00;FS=2.785;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.082;QD=23.69;ReadPosRankSum=2.399;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:2,193:198:99:4691,490,0 chrXIV 537552 . T G 6066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.624;DP=246;Dels=0.00;FS=4.117;HaplotypeScore=16.8474;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.877;QD=24.66;ReadPosRankSum=3.242;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:5,240:246:99:6066,631,0 chrXIV 537637 . A G 6748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=13.0028;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.603;QD=24.99;ReadPosRankSum=1.642;SB=-3.686e+03 GT:AD:DP:GQ:PL 1/1:1,268:270:99:6748,682,0 chrXIV 538397 . T G 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.383;DP=144;Dels=0.00;FS=15.453;HaplotypeScore=17.4317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.455;QD=21.81;ReadPosRankSum=3.395;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:4,135:144:99:3173,322,0 chrXIV 538530 . G A 4464.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.5636;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.80;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4464,448,0 chrXIV 539903 . C T 2533 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=24.36;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2566,255,0 chrXIV 540184 . C T 4968.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.48;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,216:221:99:4968,505,0 chrXIV 540188 . T A 5026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=215;Dels=0.00;FS=7.592;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=1.388;QD=23.38;ReadPosRankSum=2.415;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:5026,496,0 chrXIV 540589 . A G 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=124;Dels=0.00;FS=3.043;HaplotypeScore=11.0508;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.750;QD=23.85;ReadPosRankSum=2.410;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2990,315,0 chrXIV 540811 . C T 2489 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=24.64;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2522,249,0 chrXIV 540838 . A G 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=0.219;QD=22.96;ReadPosRankSum=1.698;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2398,240,0 chrXIV 540985 . G A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.0145;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.78;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3766,385,0 chrXIV 541056 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=136;Dels=0.00;FS=5.071;HaplotypeScore=9.6609;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.500;QD=25.72;ReadPosRankSum=1.655;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3498,358,0 chrXIV 541168 . T C 4262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.5993;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.336;QD=25.52;ReadPosRankSum=1.649;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:4262,430,0 chrXIV 541405 . C G 2257 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.70;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2290,234,0 chrXIV 541561 . T A 1775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.405;QD=25.00;ReadPosRankSum=2.380;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:99:1808,183,0 chrXIV 541746 . G A 2884 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.1809;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.85;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2917,289,0 chrXIV 541750 . T C 2951 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.49;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2984,303,0 chrXIV 541912 . A G 5250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.967;DP=216;Dels=0.00;FS=5.480;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.760;QD=24.31;ReadPosRankSum=2.939;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:3,210:216:99:5250,529,0 chrXIV 541942 . A G 4925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=212;Dels=0.00;FS=5.928;HaplotypeScore=18.7044;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=0.929;QD=23.23;ReadPosRankSum=2.948;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:3,208:212:99:4925,511,0 chrXIV 542034 . A G 4603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=1.086;QD=21.92;ReadPosRankSum=1.715;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4603,481,0 chrXIV 542052 . T C 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=217;Dels=0.00;FS=8.843;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.006;QD=20.86;ReadPosRankSum=2.415;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:4527,466,0 chrXIV 542117 . C T 3489.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=19.7439;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.77;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3489,363,0 chrXIV 542157 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.15;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3499,361,0 chrXIV 542570 . G A 6185.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=23.6604;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=25.14;SB=-3.227e+03 GT:AD:DP:GQ:PL 1/1:0,243:246:99:6185,604,0 chrXIV 542627 . T C 5828.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.83;SB=-3.051e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:5828,610,0 chrXIV 542645 . C G 5284.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=10.0637;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.80;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,247:254:99:5284,556,0 chrXIV 542690 . G C 3642.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=18.5495;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.46;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3642,379,0 chrXIV 542931 . T C 5314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.610;QD=24.83;ReadPosRankSum=1.716;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:5314,550,0 chrXIV 543005 . T A 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=1.114;QD=20.05;ReadPosRankSum=1.700;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4271,442,0 chrXIV 543016 . G A 4490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=202;Dels=0.00;FS=3.394;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-1.577;QD=22.23;ReadPosRankSum=1.267;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4490,451,0 chrXIV 543829 . A T 4861.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.56;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4861,496,0 chrXIV 544303 . T C 4472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.6898;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.112;QD=23.91;ReadPosRankSum=2.384;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4472,466,0 chrXIV 544324 . A G 4436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.5591;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.968;QD=23.72;ReadPosRankSum=1.713;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4436,451,0 chrXIV 544644 . G A 3534.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=24.71;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3534,346,0 chrXIV 544661 . C T 3469.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=24.09;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3469,337,0 chrXIV 544744 . G A 3982.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.73;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3982,397,0 chrXIV 544998 . T C 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=145;Dels=0.00;FS=3.875;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.505;QD=22.70;ReadPosRankSum=1.708;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3292,342,0 chrXIV 545184 . A G 2656 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.15;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2689,273,0 chrXIV 545273 . T C 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=113;Dels=0.00;FS=7.490;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.838;QD=23.08;ReadPosRankSum=2.319;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2641,264,0 chrXIV 545517 . T C 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.476;QD=26.18;ReadPosRankSum=1.700;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2887,294,0 chrXIV 545620 . T C 4663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.095;QD=24.94;ReadPosRankSum=2.396;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4663,475,0 chrXIV 545697 . T C 3842.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.6815;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.44;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3842,388,0 chrXIV 545945 . T A 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.025;QD=22.81;ReadPosRankSum=1.656;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3135,324,0 chrXIV 546186 . C T 3817.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.8129;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3817,394,0 chrXIV 546237 . T C 5684.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.4398;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.38;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5684,589,0 chrXIV 546598 . T C 3336.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=24.00;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3336,346,0 chrXIV 546706 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=40.51;MQ0=0;QD=26.77;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2523,249,0 chrXIV 546738 . T A 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.16;MQ0=2;QD=1.06;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:2,13:15:6:47,6,0 chrXIV 547142 . T A 2113 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=39.26;MQ0=9;QD=16.64;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:5,122:127:99:2146,216,0 chrXIV 547200 . A T 3113 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=23.06;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3146,316,0 chrXIV 547250 . T C 3944.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;QD=23.48;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3944,409,0 chrXIV 547365 . C G 1998 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=22.20;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,87:90:99:2031,216,0 chrXIV 547408 . G A 2348 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.60;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2381,249,0 chrXIV 547464 . T C 3619.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.62;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3619,367,0 chrXIV 547721 . A C 3912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.967;QD=23.85;ReadPosRankSum=1.711;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3912,400,0 chrXIV 547766 . A T 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.3266;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.386;QD=22.98;ReadPosRankSum=1.674;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2791,274,0 chrXIV 548403 . T C 4778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.961;DP=181;Dels=0.00;FS=2.563;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.017;QD=26.40;ReadPosRankSum=2.883;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:3,177:181:99:4778,481,0 chrXIV 548516 . T C 5307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=218;Dels=0.00;FS=2.852;HaplotypeScore=23.5945;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.506;QD=24.34;ReadPosRankSum=2.427;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:2,214:218:99:5307,547,0 chrXIV 548771 . T C 5866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.043;DP=258;Dels=0.00;FS=20.141;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.903;QD=22.74;ReadPosRankSum=4.149;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:6,251:258:99:5866,595,0 chrXIV 549170 . A G 4422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.339;DP=188;Dels=0.00;FS=5.142;HaplotypeScore=9.7942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.481;QD=23.52;ReadPosRankSum=3.274;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:4,184:188:99:4422,448,0 chrXIV 549239 . A G 4743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=196;Dels=0.00;FS=2.471;HaplotypeScore=12.4152;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.077;QD=24.20;ReadPosRankSum=2.954;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:3,192:196:99:4743,487,0 chrXIV 549291 . G C 3773.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.6141;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.73;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,159:166:99:3773,385,0 chrXIV 549415 . T C 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=128;Dels=0.00;FS=3.042;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.288;QD=22.16;ReadPosRankSum=2.217;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2869,297,0 chrXIV 549448 . A C 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=129;Dels=0.00;FS=3.114;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.341;QD=24.23;ReadPosRankSum=1.705;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:3159,330,0 chrXIV 549560 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.185;QD=25.62;ReadPosRankSum=1.706;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3433,349,0 chrXIV 549689 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.4250;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.24;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3432,334,0 chrXIV 550173 . A T 2370 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.47;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2403,246,0 chrXIV 550193 . T C 2220 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.55;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2253,231,0 chrXIV 550908 . G C 2108 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.51;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2141,222,0 chrXIV 551869 . T A 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.593;QD=22.95;ReadPosRankSum=1.686;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3443,357,0 chrXIV 551939 . T C 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=185;Dels=0.00;FS=3.457;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.280;QD=23.29;ReadPosRankSum=1.676;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4309,442,0 chrXIV 552035 . C G 4340.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.25;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,175:179:99:4340,439,0 chrXIV 552067 . A G 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.380;DP=156;Dels=0.00;FS=8.777;HaplotypeScore=7.3768;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.376;QD=24.33;ReadPosRankSum=3.403;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:4,152:156:99:3795,391,0 chrXIV 552144 . G A 4082.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.8254;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.59;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4082,421,0 chrXIV 552287 . G A 3447.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.0233;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.24;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3447,360,0 chrXIV 552334 . G A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.1612;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=26.08;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3755,373,0 chrXIV 552417 . C A 1849 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=36.46;MQ0=0;QD=16.08;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1882,192,0 chrXIV 552548 . T C 2468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=3.134;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.955;QD=23.07;ReadPosRankSum=1.700;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2501,258,0 chrXIV 552682 . G A 4420.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=24.56;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4420,457,0 chrXIV 552709 . G A 4522.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=23.93;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4522,448,0 chrXIV 552787 . C G 4390.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.4224;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.77;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4390,445,0 chrXIV 552957 . A G 5634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.353;DP=228;Dels=0.00;FS=4.426;HaplotypeScore=12.4170;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=1.287;QD=24.71;ReadPosRankSum=2.738;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:4,223:228:99:5634,586,0 chrXIV 553147 . G C 2317 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;QD=15.14;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2350,231,0 chrXIV 553207 . T A 4719.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.1965;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=24.08;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4719,469,0 chrXIV 553370 . G C 3790.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=25.27;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,144:150:99:3790,388,0 chrXIV 553539 . C T 4749.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.13;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4749,466,0 chrXIV 553652 . C T 5565.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.88;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5565,556,0 chrXIV 553832 . C T 5690.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.86;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5690,583,0 chrXIV 554140 . T C 2686 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.15;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2719,276,0 chrXIV 554151 . T C 2722 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=21.78;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2755,276,0 chrXIV 554217 . T C 2338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=4.128;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.859;QD=19.32;ReadPosRankSum=1.703;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2371,243,0 chrXIV 554609 . T C 4943.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.72;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4943,508,0 chrXIV 555245 . T C 4616.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.0167;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.22;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4616,466,0 chrXIV 555416 . C T 3756.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.9735;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.08;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3756,370,0 chrXIV 555441 . T C 3825.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.76;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3825,385,0 chrXIV 555551 . T C 4562.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4562,469,0 chrXIV 555641 . T C 3126 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.81;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3159,319,0 chrXIV 555698 . T C 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.237;HaplotypeScore=5.9711;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.646;QD=24.49;ReadPosRankSum=1.703;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2972,301,0 chrXIV 555821 . A G 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=109;Dels=0.00;FS=3.385;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.160;QD=22.78;ReadPosRankSum=1.637;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2516,255,0 chrXIV 556301 . C T 4526.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=27.27;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4526,442,0 chrXIV 556380 . T C 4015.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=23.62;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4015,406,0 chrXIV 556391 . T C 3655.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.50;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3655,370,0 chrXIV 556412 . G A 3448.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.02;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3448,343,0 chrXIV 556547 . G A 5684.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=19.6199;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=26.31;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:5684,565,0 chrXIV 556862 . A C 3870.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.97;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3870,403,0 chrXIV 556914 . A T 4744.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.9177;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.21;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4744,475,0 chrXIV 559885 . C T 3931.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.26;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3931,403,0 chrXIV 560313 . A T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=26.10;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3967,391,0 chrXIV 560592 . A G 1795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;MQRankSum=-0.693;QD=22.44;ReadPosRankSum=1.646;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1828,201,0 chrXIV 560615 . T C 1838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=7.142;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;MQRankSum=0.390;QD=23.27;ReadPosRankSum=2.200;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1871,192,0 chrXIV 560653 . C T 1056 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=12.72;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1089,120,0 chrXIV 560654 . T A 1047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;MQRankSum=-0.330;QD=12.46;ReadPosRankSum=1.691;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1080,120,0 chrXIV 560671 . A G 1140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=6.576;HaplotypeScore=92.4409;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;MQRankSum=-0.346;QD=11.40;ReadPosRankSum=1.697;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1173,123,0 chrXIV 560870 . T C 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=177;Dels=0.00;FS=3.672;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=38.99;MQ0=0;MQRankSum=-0.832;QD=17.50;ReadPosRankSum=1.654;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3131,319,0 chrXIV 560881 . A G 3859.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;QD=19.59;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3859,400,0 chrXIV 560883 . T C 3922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.01;FS=4.541;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=41.36;MQ0=0;MQRankSum=-1.063;QD=19.13;ReadPosRankSum=1.663;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:3922,414,0 chrXIV 560972 . A G 4164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.345;DP=187;Dels=0.02;FS=2.395;HaplotypeScore=63.5159;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;MQRankSum=0.301;QD=22.27;ReadPosRankSum=3.412;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:4,179:183:99:4164,427,0 chrXIV 561038 . T A 2365 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=0;QD=20.39;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2398,240,0 chrXIV 561043 . A G 2422 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=21.43;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2455,252,0 chrXIV 561076 . A G 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;MQRankSum=0.577;QD=21.84;ReadPosRankSum=1.701;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2457,261,0 chrXIV 561110 . G A 1825 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=0;QD=21.22;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1858,195,0 chrXIV 561164 . A T 1199 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.26;MQ0=0;QD=23.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1232,123,0 chrXIV 561180 . A G 922 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=25.8809;MLEAC=2;MLEAF=1.00;MQ=30.09;MQ0=0;QD=21.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:99:955,99,0 chrXIV 561281 . G T 325 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=9.3239;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.48;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:36:358,36,0 chrXIV 561317 . C T 114.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=14.28;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:147,15,0 chrXIV 561323 . G A 84.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=12.07;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:117,12,0 chrXIV 561328 . C T 88.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.70;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:121,12,0 chrXIV 561332 . G A 89.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.90;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:122,12,0 chrXIV 561350 . A T 119.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.12;MQ0=0;QD=14.91;SB=-3.020e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:152,15,0 chrXIV 561364 . G A 147.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.19;MQ0=0;QD=18.39;SB=-3.507e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:180,18,0 chrXIV 561370 . T C 164.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.44;MQ0=0;MQRankSum=-0.696;QD=16.41;ReadPosRankSum=1.393;SB=-2.804e+01 GT:AD:DP:GQ:PL 1/1:1,9:10:21:197,21,0 chrXIV 561394 . T A 421 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=32.80;MQ0=0;QD=23.39;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:45:454,45,0 chrXIV 561473 . A G 1198 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.54;MQ0=0;QD=27.86;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1231,126,0 chrXIV 561486 . C T 1063 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=27.26;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1096,111,0 chrXIV 561496 . T C 1092 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.05;FS=0.000;HaplotypeScore=6.6931;MLEAC=2;MLEAF=1.00;MQ=36.87;MQ0=0;QD=26.00;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1125,117,0 chrXIV 561600 . A G 325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;MQRankSum=0.385;QD=18.06;ReadPosRankSum=1.542;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:1,17:18:39:358,39,0 chrXIV 567873 . G A 45.97 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=18.9001;MLEAC=2;MLEAF=1.00;MQ=23.99;MQ0=10;QD=1.35;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:9,23:34:9:78,9,0 chrXIV 567881 . T A 50.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.00;MQ0=13;MQRankSum=-1.589;QD=1.38;ReadPosRankSum=1.589;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:14,23:37:9:83,9,0 chrXIV 567899 . C T 96.26 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.35;MQ0=13;QD=3.21;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:12,18:30:15:129,15,0 chrXIV 567909 . G A 62.06 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;DP=31;Dels=0.00;FS=12.553;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.64;MQ0=13;MQRankSum=0.000;QD=2.00;ReadPosRankSum=1.542;SB=-3.071e+00 GT:AD:DP:GQ:PL 0/1:14,17:31:16:92,0,16 chrXIV 567910 . C T 64.11 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;DP=31;Dels=0.00;FS=12.553;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.64;MQ0=13;MQRankSum=-0.964;QD=2.07;ReadPosRankSum=1.542;SB=-3.124e+00 GT:AD:DP:GQ:PL 0/1:14,17:31:13:94,0,13 chrXIV 567914 . A T 99.09 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;DP=41;Dels=0.00;FS=14.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.65;MQ0=13;MQRankSum=-1.238;QD=2.42;ReadPosRankSum=0.371;SB=-3.102e+00 GT:AD:DP:GQ:PL 0/1:14,27:41:14:129,0,14 chrXIV 567919 . C T 106.11 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;DP=40;Dels=0.00;FS=14.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.94;MQ0=12;MQRankSum=0.371;QD=2.65;ReadPosRankSum=0.371;SB=-3.124e+00 GT:AD:DP:GQ:PL 0/1:13,27:40:13:136,0,13 chrXIV 567921 . A T 105.11 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.114;DP=40;Dels=0.00;FS=14.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.94;MQ0=12;MQRankSum=-0.248;QD=2.63;ReadPosRankSum=-0.248;SB=-3.124e+00 GT:AD:DP:GQ:PL 0/1:13,27:40:13:135,0,13 chrXIV 567925 . C T 100.07 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;DP=39;Dels=0.00;FS=14.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.25;MQ0=11;MQRankSum=0.124;QD=2.57;ReadPosRankSum=-0.248;SB=-3.085e+00 GT:AD:DP:GQ:PL 0/1:12,27:39:15:130,0,15 chrXIV 567928 . T C 96.27 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;DP=39;Dels=0.00;FS=14.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.25;MQ0=11;MQRankSum=-0.124;QD=2.47;ReadPosRankSum=-1.609;SB=-3.282e+00 GT:AD:DP:GQ:PL 0/1:12,27:39:9:126,0,9 chrXIV 567931 . A G 95.18 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;DP=38;Dels=0.00;FS=14.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.57;MQ0=10;MQRankSum=0.248;QD=2.50;ReadPosRankSum=-1.609;SB=-3.186e+00 GT:AD:DP:GQ:PL 0/1:11,27:38:11:125,0,11 chrXIV 567937 . A C 70.06 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432;DP=32;Dels=0.00;FS=13.617;HaplotypeScore=10.9368;MLEAC=1;MLEAF=0.500;MQ=24.19;MQ0=9;MQRankSum=0.829;QD=2.19;ReadPosRankSum=-1.734;SB=-3.071e+00 GT:AD:DP:GQ:PL 0/1:10,22:32:16:100,0,16 chrXIV 567938 . T C 72.07 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;DP=32;Dels=0.00;FS=13.617;HaplotypeScore=10.9368;MLEAC=1;MLEAF=0.500;MQ=24.19;MQ0=9;MQRankSum=-0.377;QD=2.25;ReadPosRankSum=-1.734;SB=-3.085e+00 GT:AD:DP:GQ:PL 0/1:10,22:32:15:102,0,15 chrXIV 567941 . A G 72.07 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;DP=32;Dels=0.00;FS=13.617;HaplotypeScore=10.9368;MLEAC=1;MLEAF=0.500;MQ=24.19;MQ0=9;MQRankSum=1.432;QD=2.25;ReadPosRankSum=-1.734;SB=-3.085e+00 GT:AD:DP:GQ:PL 0/1:10,22:32:15:102,0,15 chrXIV 568008 . G A 481 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.3007;MLEAC=2;MLEAF=1.00;MQ=32.29;MQ0=0;QD=9.43;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,47:51:57:514,57,0 chrXIV 568045 . T A 1016 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.69;MQ0=0;QD=19.54;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1049,105,0 chrXIV 568046 . T C 1002 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.69;MQ0=0;QD=19.27;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1035,105,0 chrXIV 568113 . T G 1928 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.48;MQ0=3;QD=22.68;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:3,82:85:99:1961,201,0 chrXIV 568114 . C T 1918 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.07;MQ0=5;QD=22.05;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:5,82:87:99:1951,201,0 chrXIV 568278 . C T 398 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.04;FS=0.000;HaplotypeScore=12.5954;MLEAC=2;MLEAF=1.00;MQ=37.28;MQ0=0;QD=5.69;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:48:431,48,0 chrXIV 568362 . A G 1009 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=13.28;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1042,111,0 chrXIV 568368 . T G 1194 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=15.11;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1227,126,0 chrXIV 568547 . A G 2853 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=23.01;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2886,300,0 chrXIV 568618 . A C 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.494;QD=20.72;ReadPosRankSum=2.349;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2561,264,0 chrXIV 568753 . T C 3907.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.40;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3907,400,0 chrXIV 568837 . A G 4430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=180;Dels=0.00;FS=5.022;HaplotypeScore=12.6877;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.031;QD=24.61;ReadPosRankSum=1.693;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:4430,469,0 chrXIV 568887 . A G 3576.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.16;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3576,370,0 chrXIV 568902 . T C 3571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=149;Dels=0.00;FS=2.803;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.691;QD=23.97;ReadPosRankSum=2.351;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3571,367,0 chrXIV 568967 . A G 4783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=218;Dels=0.00;FS=3.194;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.088;QD=21.94;ReadPosRankSum=1.684;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:4783,496,0 chrXIV 569371 . G A 5291.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.94;SB=-2.836e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5291,529,0 chrXIV 569942 . C T 1429 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=17;QD=14.58;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1462,144,0 chrXIV 569961 . G C 1756 filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=39.84;MQ0=17;QD=15.27;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1789,186,0 chrXIV 570002 . G A 3297.01 filter AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.57;MQ0=23;QD=19.74;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3297,331,0 chrXIV 570020 . C T 2845 filter AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.60;MQ0=15;QD=18.84;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2878,286,0 chrXIV 570034 . C A 2630 filter AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.15;MQ0=20;QD=17.53;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2663,262,0 chrXIV 570117 . A G 175.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=34.8878;MLEAC=2;MLEAF=1.00;MQ=18.63;MQ0=21;MQRankSum=-0.151;QD=2.82;ReadPosRankSum=2.209;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:2,60:62:24:208,24,0 chrXIV 570162 . G C 623 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.20;MQ0=28;QD=11.75;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:66:656,66,0 chrXIV 570167 . T C 726 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=62;Dels=0.00;FS=5.051;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.12;MQ0=30;MQRankSum=1.625;QD=11.71;ReadPosRankSum=1.408;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:81:759,81,0 chrXIV 570409 . T C 178.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.300;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=13.67;MQ0=36;MQRankSum=1.516;QD=2.62;ReadPosRankSum=1.625;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:3,65:68:24:211,24,0 chrXIV 570461 . G A 287 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.61;MQ0=44;QD=3.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:36:320,36,0 chrXIV 570475 . T C 194.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=32.8750;MLEAC=1;MLEAF=0.500;MQ=14.29;MQ0=39;MQRankSum=-0.644;QD=2.13;ReadPosRankSum=-0.351;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,49:91:99:224,0,120 chrXIV 570509 . T C 201.03 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.19;MQ0=17;QD=4.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:24:234,24,0 chrXIV 570569 . C T 172.06 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.75;MQ0=8;QD=4.92;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,35:35:21:205,21,0 chrXIV 570574 . G A 208.03 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.19;MQ0=7;QD=5.47;SB=-3.987e-02 GT:AD:DP:GQ:PL 1/1:0,38:38:24:241,24,0 chrXIV 570597 . G A 533 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.90;MQ0=17;QD=5.86;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,91:91:57:566,57,0 chrXIV 570599 . C T 579 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.95;MQ0=19;QD=6.09;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,95:95:63:612,63,0 chrXIV 570609 . A G 663 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5304;MLEAC=2;MLEAF=1.00;MQ=22.08;MQ0=28;QD=5.82;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,113:114:72:696,72,0 chrXIV 570645 . C T 1065.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.693;DP=203;Dels=0.00;FS=6.106;HaplotypeScore=17.7034;MLEAC=1;MLEAF=0.500;MQ=34.94;MQ0=27;MQRankSum=2.021;QD=5.25;ReadPosRankSum=-0.346;SB=-2.880e+02 GT:AD:DP:GQ:PL 0/1:107,96:203:99:1095,0,1087 chrXIV 570750 . A G 4639.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.963;DP=218;Dels=0.00;FS=16.133;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=29;MQRankSum=-1.495;QD=21.28;ReadPosRankSum=1.963;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:4,214:218:99:4639,481,0 chrXIV 570761 . C T 4042.01 filter AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=29;QD=19.91;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4042,409,0 chrXIV 570777 . G A 4080.01 filter AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.9959;MLEAC=2;MLEAF=1.00;MQ=29.04;MQ0=29;QD=19.07;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4080,406,0 chrXIV 570806 . A G 1606.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.672;DP=270;Dels=0.00;FS=3.323;HaplotypeScore=34.7478;MLEAC=1;MLEAF=0.500;MQ=32.04;MQ0=24;MQRankSum=-0.459;QD=5.95;ReadPosRankSum=1.281;SB=-4.480e+02 GT:AD:DP:GQ:PL 0/1:138,128:270:99:1636,0,1971 chrXIV 570955 . T C 6513.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.696;DP=716;Dels=0.00;FS=1.691;HaplotypeScore=47.3891;MLEAC=1;MLEAF=0.500;MQ=45.04;MQ0=19;MQRankSum=-1.421;QD=9.10;ReadPosRankSum=1.546;SB=-1.832e+03 GT:AD:DP:GQ:PL 0/1:375,339:716:99:6513,0,7200 chrXIV 570986 . T C 15563.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=686;Dels=0.00;FS=2.473;HaplotypeScore=32.8781;MLEAC=2;MLEAF=1.00;MQ=41.02;MQ0=26;MQRankSum=2.158;QD=22.69;ReadPosRankSum=2.974;SB=-4.087e+03 GT:AD:DP:GQ:PL 1/1:3,681:686:99:15563,1590,0 chrXIV 571020 . G A 11803.01 filter AC=2;AF=1.00;AN=2;DP=544;Dels=0.00;FS=0.000;HaplotypeScore=14.2583;MLEAC=2;MLEAF=1.00;MQ=37.17;MQ0=41;QD=21.70;SB=-4.411e+03 GT:AD:DP:GQ:PL 1/1:0,541:544:99:11803,1202,0 chrXIV 571049 . G A 7585.01 filter AC=2;AF=1.00;AN=2;DP=448;Dels=0.00;FS=0.000;HaplotypeScore=3.7183;MLEAC=2;MLEAF=1.00;MQ=30.86;MQ0=37;QD=16.93;SB=-4.014e+03 GT:AD:DP:GQ:PL 1/1:0,448:448:99:7585,769,0 chrXIV 571056 . A C 6846.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=432;Dels=0.00;FS=0.000;HaplotypeScore=7.1983;MLEAC=2;MLEAF=1.00;MQ=31.50;MQ0=30;MQRankSum=-1.448;QD=15.85;ReadPosRankSum=2.339;SB=-3.292e+03 GT:AD:DP:GQ:PL 1/1:2,427:432:99:6846,721,0 chrXIV 571166 . T C 11537.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=638;Dels=0.00;FS=19.576;HaplotypeScore=11.4047;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=6;MQRankSum=2.658;QD=18.08;ReadPosRankSum=2.954;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:3,633:638:99:11537,1178,0 chrXIV 571170 . G A 11338.01 filter AC=2;AF=1.00;AN=2;DP=631;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=11;QD=17.97;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,629:631:99:11338,1166,0 chrXIV 571312 . A G 1539 filter AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.35;MQ0=37;QD=9.56;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,160:161:99:1572,171,0 chrXIV 571323 . C G 1923 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=190;Dels=0.00;FS=91.781;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=29;MQRankSum=7.679;QD=10.12;ReadPosRankSum=1.490;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:64,125:190:99:1956,191,0 chrXIV 571380 . G A 1678 filter AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=25.59;MQ0=44;QD=8.97;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,185:187:99:1711,180,0 chrXIV 571440 . C A 735 filter AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=13.56;MQ0=105;QD=3.83;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,189:192:87:768,87,0 chrXIV 571502 . T C 1343 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=218;Dels=0.00;FS=9.808;HaplotypeScore=18.3470;MLEAC=2;MLEAF=1.00;MQ=15.96;MQ0=95;MQRankSum=0.281;QD=6.16;ReadPosRankSum=2.909;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:3,213:218:99:1376,150,0 chrXIV 571535 . C G 2017 filter AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=18.35;MQ0=60;QD=9.74;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,206:207:99:2050,222,0 chrXIV 571619 . T C 482 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=13.32;MQ0=71;MQRankSum=-2.374;QD=4.63;ReadPosRankSum=2.297;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:2,100:104:54:515,54,0 chrXIV 571692 . A G 196.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.998;DP=111;Dels=0.00;FS=14.814;HaplotypeScore=3.3493;MLEAC=1;MLEAF=0.500;MQ=12.48;MQ0=86;MQRankSum=0.356;QD=1.77;ReadPosRankSum=2.327;SB=-2.993e+00 GT:AD:DP:GQ:PL 0/1:60,51:111:99:226,0,149 chrXIV 571707 . T C 1168 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=137;Dels=0.00;FS=5.593;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.40;MQ0=79;MQRankSum=0.119;QD=8.53;ReadPosRankSum=1.673;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:1,136:137:99:1201,129,0 chrXIV 571751 . G A 2787 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=22.91;MQ0=19;QD=15.93;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,174:175:99:2820,297,0 chrXIV 571754 . T A 1355.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;DP=172;Dels=0.00;FS=59.156;HaplotypeScore=10.4536;MLEAC=1;MLEAF=0.500;MQ=23.47;MQ0=11;MQRankSum=4.953;QD=7.88;ReadPosRankSum=1.867;SB=-2.260e+02 GT:AD:DP:GQ:PL 0/1:98,74:172:99:1385,0,909 chrXIV 571757 . G A 1409.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.553;DP=176;Dels=0.00;FS=62.117;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=23.44;MQ0=9;MQRankSum=5.270;QD=8.01;ReadPosRankSum=1.549;SB=-2.230e+02 GT:AD:DP:GQ:PL 0/1:99,74:176:99:1439,0,925 chrXIV 571793 . A G 2934 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.291;DP=210;Dels=0.01;FS=12.061;HaplotypeScore=14.2557;MLEAC=2;MLEAF=1.00;MQ=23.22;MQ0=24;MQRankSum=0.312;QD=13.97;ReadPosRankSum=3.805;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:5,202:207:99:2967,312,0 chrXIV 571841 . C T 1711 filter AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=19.15;MQ0=63;QD=11.04;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:1744,183,0 chrXIV 571889 . T C 2523 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.609;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=72;MQRankSum=-1.148;QD=13.42;ReadPosRankSum=2.940;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:3,185:188:99:2556,267,0 chrXIV 571968 . T C 389.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.041;DP=177;Dels=0.00;FS=56.154;HaplotypeScore=5.6696;MLEAC=1;MLEAF=0.500;MQ=23.68;MQ0=27;MQRankSum=-6.752;QD=2.20;ReadPosRankSum=1.460;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:88,89:177:99:419,0,1698 chrXIV 571979 . C T 376.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.385;DP=164;Dels=0.00;FS=53.656;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=22.52;MQ0=25;MQRankSum=-7.204;QD=2.29;ReadPosRankSum=0.269;SB=-1.770e+02 GT:AD:DP:GQ:PL 0/1:70,94:164:99:406,0,1241 chrXIV 571992 . T C 1460 filter AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.16;MQ0=23;QD=9.18;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:1493,153,0 chrXIV 572008 . G A 1152 filter AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=21.21;MQ0=23;QD=7.53;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:1185,120,0 chrXIV 572015 . C T 448.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;DP=165;Dels=0.00;FS=2.926;HaplotypeScore=1.7256;MLEAC=1;MLEAF=0.500;MQ=22.52;MQ0=23;MQRankSum=-3.824;QD=2.72;ReadPosRankSum=1.066;SB=-6.530e+02 GT:AD:DP:GQ:PL 0/1:41,124:165:99:478,0,448 chrXIV 572046 . G A 1254.08 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.388;DP=157;Dels=0.00;FS=10.152;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=18;MQRankSum=-0.259;QD=7.99;ReadPosRankSum=0.776;SB=-9.751e+02 GT:AD:DP:GQ:PL 1/1:22,134:157:20:1287,20,0 chrXIV 572070 . C T 2151 filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=10;QD=14.83;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2184,225,0 chrXIV 572097 . C A 3081 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.9312;MLEAC=2;MLEAF=1.00;MQ=29.86;MQ0=19;QD=17.21;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3114,339,0 chrXIV 572098 . A C 797.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.484;DP=185;Dels=0.00;FS=92.418;HaplotypeScore=4.4820;MLEAC=1;MLEAF=0.500;MQ=30.04;MQ0=18;MQRankSum=1.279;QD=4.31;ReadPosRankSum=-5.074;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,67:185:99:827,0,1660 chrXIV 572102 . T A 3432.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.8636;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=19;QD=17.88;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3432,357,0 chrXIV 572137 . A G 1563.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.902;DP=216;Dels=0.00;FS=17.629;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=28.31;MQ0=32;MQRankSum=4.011;QD=7.24;ReadPosRankSum=5.318;SB=-1.740e+02 GT:AD:DP:GQ:PL 0/1:101,115:216:99:1593,0,1163 chrXIV 572143 . G A 871.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.646;DP=210;Dels=0.00;FS=12.622;HaplotypeScore=11.0415;MLEAC=1;MLEAF=0.500;MQ=28.06;MQ0=32;MQRankSum=-3.056;QD=4.15;ReadPosRankSum=-3.281;SB=-1.680e+02 GT:AD:DP:GQ:PL 0/1:115,95:210:99:901,0,1768 chrXIV 572150 . A G 458.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.712;DP=192;Dels=0.00;FS=9.930;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=28.03;MQ0=34;MQRankSum=-3.743;QD=2.39;ReadPosRankSum=3.210;SB=-4.601e+01 GT:AD:DP:GQ:PL 0/1:123,68:192:99:488,0,1832 chrXIV 572195 . C T 1337 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=23;QD=12.73;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:1370,153,0 chrXIV 572217 . C A 68.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.222;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.56;MQ0=12;MQRankSum=1.490;QD=0.96;ReadPosRankSum=0.668;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:50,21:71:98:98,0,729 chrXIV 572219 . G A 1083 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.16;MQ0=10;QD=15.93;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1116,132,0 chrXIV 572224 . G A 879.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.373;DP=74;Dels=0.00;FS=2.374;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.31;MQ0=9;MQRankSum=-0.445;QD=11.88;ReadPosRankSum=-0.827;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:15,59:74:76:909,0,76 chrXIV 572252 . T C 1333.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;DP=104;Dels=0.00;FS=23.123;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.80;MQ0=8;MQRankSum=0.414;QD=12.82;ReadPosRankSum=3.824;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:19,85:104:99:1363,0,131 chrXIV 572261 . G A 2050 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=31.53;MQ0=6;QD=17.08;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2083,234,0 chrXIV 572277 . C T 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.665;DP=123;Dels=0.00;FS=18.263;HaplotypeScore=1.7621;MLEAC=1;MLEAF=0.500;MQ=31.56;MQ0=7;MQRankSum=-1.937;QD=0.47;ReadPosRankSum=1.275;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,17:123:88:88,0,1537 chrXIV 572298 . A G 141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.226;DP=123;Dels=0.00;FS=2.283;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=30.62;MQ0=7;MQRankSum=-2.818;QD=1.15;ReadPosRankSum=0.523;SB=-4.601e+01 GT:AD:DP:GQ:PL 0/1:98,25:123:99:171,0,1154 chrXIV 572304 . G A 152.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.574;DP=124;Dels=0.00;FS=3.282;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=11;MQRankSum=-1.753;QD=1.23;ReadPosRankSum=-0.391;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:91,33:124:99:182,0,1047 chrXIV 572330 . C T 507.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.600;DP=114;Dels=0.00;FS=10.239;HaplotypeScore=7.6396;MLEAC=1;MLEAF=0.500;MQ=27.22;MQ0=14;MQRankSum=-0.935;QD=4.45;ReadPosRankSum=1.226;SB=-3.210e+02 GT:AD:DP:GQ:PL 0/1:46,67:114:99:537,0,562 chrXIV 572331 . G A 552.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;DP=112;Dels=0.00;FS=6.685;HaplotypeScore=6.8509;MLEAC=1;MLEAF=0.500;MQ=27.32;MQ0=13;MQRankSum=0.961;QD=4.93;ReadPosRankSum=-1.637;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:64,48:112:99:582,0,501 chrXIV 572359 . C A 59.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.844;DP=76;Dels=0.00;FS=1.043;HaplotypeScore=46.4416;MLEAC=1;MLEAF=0.500;MQ=19.75;MQ0=18;MQRankSum=-2.715;QD=0.78;ReadPosRankSum=-2.933;SB=-1.130e+02 GT:AD:DP:GQ:PL 0/1:43,33:76:89:89,0,452 chrXIV 572360 . G C 668 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=46.4416;MLEAC=2;MLEAF=1.00;MQ=19.47;MQ0=18;QD=9.03;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:75:701,75,0 chrXIV 572364 . T C 61.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;DP=72;Dels=0.00;FS=1.116;HaplotypeScore=46.0480;MLEAC=1;MLEAF=0.500;MQ=19.34;MQ0=18;MQRankSum=-3.391;QD=0.85;ReadPosRankSum=-2.924;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:42,30:72:91:91,0,464 chrXIV 572365 . A C 59.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;DP=72;Dels=0.00;FS=1.116;HaplotypeScore=46.0480;MLEAC=1;MLEAF=0.500;MQ=19.34;MQ0=18;MQRankSum=-2.906;QD=0.82;ReadPosRankSum=-2.993;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:42,30:72:89:89,0,439 chrXIV 572374 . G A 594 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=19.53;MQ0=20;QD=8.03;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:66:627,66,0 chrXIV 572516 . T C 1790 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=46.6348;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=7;MQRankSum=-0.368;QD=11.12;ReadPosRankSum=1.705;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:1,133:161:99:1823,195,0 chrXIV 572525 . T C 1535.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.745;DP=167;Dels=0.00;FS=11.943;HaplotypeScore=61.0519;MLEAC=1;MLEAF=0.500;MQ=28.29;MQ0=5;MQRankSum=4.517;QD=9.19;ReadPosRankSum=4.345;SB=-8.084e+02 GT:AD:DP:GQ:PL 0/1:45,122:167:7:1565,0,7 chrXIV 572529 . C T 1921 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=169;Dels=0.00;FS=2.189;HaplotypeScore=78.7236;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=4;MQRankSum=2.214;QD=11.37;ReadPosRankSum=-2.992;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:18,151:169:99:1954,201,0 chrXIV 572596 . C T 1000 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=88;Dels=0.00;FS=9.657;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.03;MQ0=9;MQRankSum=2.165;QD=11.36;ReadPosRankSum=2.387;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:2,85:88:99:1033,132,0 chrXIV 572597 . T C 996 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.344;DP=89;Dels=0.00;FS=2.275;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.32;MQ0=9;MQRankSum=1.203;QD=11.19;ReadPosRankSum=3.344;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:4,85:89:99:1029,132,0 chrXIV 572600 . A G 1417 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.44;MQ0=10;QD=16.10;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1450,165,0 chrXIV 572643 . A G 645 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.58;MQ0=25;QD=10.24;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:72:678,72,0 chrXIV 572678 . C T 1868 filter AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=25;QD=13.15;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1901,195,0 chrXIV 572728 . C T 432.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;DP=165;Dels=0.00;FS=3.801;HaplotypeScore=3.5663;MLEAC=1;MLEAF=0.500;MQ=30.14;MQ0=22;MQRankSum=-5.161;QD=2.62;ReadPosRankSum=1.069;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:80,84:165:99:462,0,1426 chrXIV 572774 . A C 1404 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.28;MQ0=30;MQRankSum=3.231;QD=14.94;ReadPosRankSum=3.314;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,90:94:99:1437,144,0 chrXIV 572837 . T C 954 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.03;MQ0=16;QD=14.68;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:987,102,0 chrXIV 572852 . C T 209.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.570;DP=54;Dels=0.00;FS=1.446;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=26.55;MQ0=12;MQRankSum=0.157;QD=3.87;ReadPosRankSum=0.551;SB=-5.901e+01 GT:AD:DP:GQ:PL 0/1:34,19:54:99:239,0,311 chrXIV 572878 . G A 318 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.15;MQ0=9;QD=11.78;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,24:27:36:351,36,0 chrXIV 572915 . C T 488 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.70;MQ0=50;QD=6.68;SB=-6.587e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:51:521,51,0 chrXIV 572986 . C T 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=19.13;MQ0=14;MQRankSum=-0.212;QD=1.52;ReadPosRankSum=0.817;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:15,11:27:67:71,0,67 chrXIV 572989 . G A 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=19.30;MQ0=11;MQRankSum=0.143;QD=1.59;ReadPosRankSum=0.143;SB=-6.606e-03 GT:AD:DP:GQ:PL 0/1:12,10:22:44:65,0,44 chrXIV 572998 . C T 166.06 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=1;QD=13.84;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:21:199,21,0 chrXIV 573031 . C T 102.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.88;MQ0=59;MQRankSum=0.296;QD=1.48;ReadPosRankSum=-0.546;SB=-6.691e-03 GT:AD:DP:GQ:PL 0/1:37,32:69:41:132,0,41 chrXIV 573614 . G T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=9.43;MQ0=132;MQRankSum=1.813;QD=0.15;ReadPosRankSum=-1.517;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,64:144:52:52,0,117 chrXIV 573662 . C T 1819 filter AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=18.77;MQ0=125;QD=9.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:1852,189,0 chrXIV 573783 . C T 96.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.3832;MLEAC=1;MLEAF=0.500;MQ=16.43;MQ0=50;MQRankSum=1.268;QD=1.35;ReadPosRankSum=0.396;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,28:71:99:126,0,179 chrXIV 573939 . A C 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.473;DP=166;Dels=0.00;FS=2.576;HaplotypeScore=8.6613;MLEAC=2;MLEAF=1.00;MQ=40.73;MQ0=0;MQRankSum=-0.121;QD=19.36;ReadPosRankSum=2.958;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3246,336,0 chrXIV 573968 . C T 824.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.702;DP=104;Dels=0.00;FS=126.428;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=37.68;MQ0=4;MQRankSum=-3.400;QD=7.92;ReadPosRankSum=0.827;SB=-1.360e+02 GT:AD:DP:GQ:PL 0/1:36,67:104:99:854,0,443 chrXIV 573972 . C T 802.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.181;DP=101;Dels=0.00;FS=126.447;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=36.83;MQ0=4;MQRankSum=-4.165;QD=7.94;ReadPosRankSum=1.660;SB=-1.600e+02 GT:AD:DP:GQ:PL 0/1:33,67:101:99:832,0,412 chrXIV 574001 . A C 427 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=67;Dels=0.00;FS=25.126;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=30.57;MQ0=4;MQRankSum=-2.176;QD=6.37;ReadPosRankSum=2.372;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:2,65:67:48:460,48,0 chrXIV 574012 . C T 670 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.7044;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=4;QD=8.37;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:4,76:80:72:703,72,0 chrXIV 574027 . G A 501 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.6492;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=3;QD=10.44;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:3,44:48:57:534,57,0 chrXIV 574033 . G A 587 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.7711;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=3;QD=11.29;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:63:620,63,0 chrXIV 574042 . G A 1016 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=38.37;MQ0=3;QD=15.87;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:99:1049,108,0 chrXIV 574150 . T C 2615 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=21.79;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2648,276,0 chrXIV 574170 . C T 2582 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=21.88;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2615,262,0 chrXIV 574190 . T C 2455 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=21.16;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2488,255,0 chrXIV 574362 . A G 2932 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.2269;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=25.50;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2965,309,0 chrXIV 574682 . C T 4356.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.7187;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.81;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4356,424,0 chrXIV 574697 . T C 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=204;Dels=0.00;FS=3.730;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.135;QD=21.44;ReadPosRankSum=1.715;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4374,454,0 chrXIV 574776 . G A 4269.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=18.4374;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4269,442,0 chrXIV 575525 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.27;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3212,328,0 chrXIV 575751 . G A 2609 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3196;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.69;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2642,256,0 chrXIV 575763 . G A 2725 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7734;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.15;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2758,279,0 chrXIV 575952 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=26.89;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4034,412,0 chrXIV 576018 . G A 3197 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=24.04;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3230,336,0 chrXIV 576084 . G A 4398.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=25.72;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4398,433,0 chrXIV 576121 . A C 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-1.454;QD=24.09;ReadPosRankSum=1.689;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3927,409,0 chrXIV 576309 . G A 4523.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.1358;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;QD=21.23;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:4523,448,0 chrXIV 576317 . G T 4264.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.8148;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.21;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4264,430,0 chrXIV 576383 . A G 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=206;Dels=0.00;FS=2.976;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.163;QD=20.14;ReadPosRankSum=2.329;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:2,202:206:99:4149,430,0 chrXIV 576473 . T A 4852.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=19.0054;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.56;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4852,496,0 chrXIV 576675 . C T 2443 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.06;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2476,246,0 chrXIV 576990 . T G 2376 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=1;QD=22.63;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2409,243,0 chrXIV 577194 . A G 1562 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=19.4750;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=19.77;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,73:79:99:1595,168,0 chrXIV 577269 . G A 4971.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=25.62;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4971,526,0 chrXIV 577292 . C T 3975.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.98;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3975,400,0 chrXIV 577301 . G A 3715.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=21.23;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3715,364,0 chrXIV 577325 . T C 2991 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=18.58;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3024,321,0 chrXIV 577382 . G A 4672.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.59;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4672,490,0 chrXIV 577727 . G A 4120.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.41;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4120,421,0 chrXIV 577754 . C T 4329.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=25.62;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4329,424,0 chrXIV 577824 . C A 3388.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.7026;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.03;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3388,337,0 chrXIV 577917 . T C 3641.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8171;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.64;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3641,364,0 chrXIV 577988 . G A 3863.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.58;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3863,400,0 chrXIV 578628 . T G 8810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.401;DP=348;Dels=0.00;FS=8.202;HaplotypeScore=29.7271;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.914;QD=25.32;ReadPosRankSum=3.396;SB=-4.038e+03 GT:AD:DP:GQ:PL 1/1:4,341:348:99:8810,892,0 chrXIV 579044 . T A 4767.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.4487;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.49;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4767,469,0 chrXIV 579121 . A G 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.023;QD=24.34;ReadPosRankSum=1.669;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4041,418,0 chrXIV 579960 . G A 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.499;DP=209;Dels=0.00;FS=2.833;HaplotypeScore=27.8569;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;MQRankSum=0.429;QD=9.03;ReadPosRankSum=0.523;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:1921,192,0 chrXIV 579966 . G A 1523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.808;DP=199;Dels=0.00;FS=2.814;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=36.61;MQ0=0;MQRankSum=-1.425;QD=7.65;ReadPosRankSum=0.685;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:1556,162,0 chrXIV 579972 . G A 1304 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=35.90;MQ0=0;QD=6.83;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:1337,144,0 chrXIV 579984 . G A 866 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;QD=4.63;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:93:899,93,0 chrXIV 580005 . A G 2315 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=12.51;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:2348,249,0 chrXIV 580534 . A G 4643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=190;Dels=0.00;FS=12.991;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.535;QD=24.44;ReadPosRankSum=2.963;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:3,185:190:99:4643,487,0 chrXIV 580610 . C T 4069.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.8725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4069,418,0 chrXIV 581286 . T C 4553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=183;Dels=0.00;FS=3.031;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.584;QD=24.88;ReadPosRankSum=2.423;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4553,475,0 chrXIV 581472 . G A 2161 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.24;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2194,219,0 chrXIV 581502 . A G 2003 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.29;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2036,207,0 chrXIV 581872 . C T 4251.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=26.24;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4251,421,0 chrXIV 581894 . A C 3873.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=24.51;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3873,397,0 chrXIV 581924 . C A 4368.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=24.00;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4368,433,0 chrXIV 582057 . A G 5605.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.1658;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.02;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:1,220:224:99:5605,586,0 chrXIV 582432 . C A 2319 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2352,234,0 chrXIV 582651 . C A 4514.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.65;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4514,451,0 chrXIV 582726 . A G 3960.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3960,400,0 chrXIV 582810 . G A 5250.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.7805;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.65;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5250,526,0 chrXIV 582846 . G A 5196.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.72;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5196,520,0 chrXIV 582944 . A G 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=3.259;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.168;QD=24.68;ReadPosRankSum=1.708;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3603,364,0 chrXIV 583083 . T C 3528.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3528,358,0 chrXIV 583481 . G T 3730.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.20;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3730,370,0 chrXIV 583620 . T C 4169.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.25;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:4169,427,0 chrXIV 583930 . G T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.49;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3444,340,0 chrXIV 584126 . C T 3211.99 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.62;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3245,319,0 chrXIV 584635 . A G 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=174;Dels=0.00;FS=6.086;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.738;QD=23.13;ReadPosRankSum=2.913;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:4025,412,0 chrXIV 584770 . G A 4133.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4133,409,0 chrXIV 585226 . A G 4065.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.23;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:4065,424,0 chrXIV 585720 . T C 2512 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.01;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2545,264,0 chrXIV 585962 . C T 2928 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=13.6220;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.42;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2961,292,0 chrXIV 585996 . T C 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=1.425;QD=25.66;ReadPosRankSum=1.704;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3215,328,0 chrXIV 586230 . A G 2461 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7853;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=23.44;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2494,255,0 chrXIV 586448 . T A 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-1.268;QD=22.82;ReadPosRankSum=1.705;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2954,301,0 chrXIV 586477 . T C 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=-1.706;QD=22.40;ReadPosRankSum=1.706;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2990,304,0 chrXIV 586543 . G A 2365 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=21.70;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2398,246,0 chrXIV 586546 . C G 2414 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=21.36;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2447,243,0 chrXIV 586773 . T C 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=4.548;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-0.780;QD=23.00;ReadPosRankSum=1.692;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3956,412,0 chrXIV 586794 . A G 3828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=0.346;QD=22.52;ReadPosRankSum=1.712;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3828,385,0 chrXIV 586832 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.79;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3334,334,0 chrXIV 586871 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.95;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3488,349,0 chrXIV 587725 . G A 3793.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5308;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.18;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3793,385,0 chrXIV 588085 . T G 1754 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.03;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1787,180,0 chrXIV 588114 . G A 2210 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1530;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.32;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2243,219,0 chrXIV 588859 . T C 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.254;QD=21.98;ReadPosRankSum=1.978;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4374,433,0 chrXIV 588903 . G A 3125 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.40;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3158,321,0 chrXIV 588959 . T C 3964.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.8538;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.09;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3964,400,0 chrXIV 589185 . C G 5788.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.32;SB=-2.859e+03 GT:AD:DP:GQ:PL 1/1:0,234:238:99:5788,595,0 chrXIV 589356 . T C 5946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=264;Dels=0.00;FS=6.763;HaplotypeScore=20.9132;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.443;QD=22.52;ReadPosRankSum=2.431;SB=-3.409e+03 GT:AD:DP:GQ:PL 1/1:2,261:264:99:5946,601,0 chrXIV 589484 . C T 9110.01 filter AC=2;AF=1.00;AN=2;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=16.3914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-3.533e+03 GT:AD:DP:GQ:PL 1/1:0,361:362:99:9110,893,0 chrXIV 589622 . A T 6311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=15.1595;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.444;QD=22.78;ReadPosRankSum=1.657;SB=-3.538e+03 GT:AD:DP:GQ:PL 1/1:1,276:277:99:6311,637,0 chrXIV 589664 . A T 8361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=359;Dels=0.00;FS=2.840;HaplotypeScore=20.0710;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.113;QD=23.29;ReadPosRankSum=2.312;SB=-4.097e+03 GT:AD:DP:GQ:PL 1/1:2,357:359:99:8361,838,0 chrXIV 589893 . G A 8613.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=25.79;SB=-4.352e+03 GT:AD:DP:GQ:PL 1/1:0,333:334:99:8613,845,0 chrXIV 589928 . G A 7555.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=7.2709;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=24.29;SB=-4.137e+03 GT:AD:DP:GQ:PL 1/1:0,309:311:99:7555,760,0 chrXIV 589946 . A T 6759.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=23.80;SB=-3.981e+03 GT:AD:DP:GQ:PL 1/1:0,284:284:99:6759,688,0 chrXIV 590547 . T C 4153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=170;Dels=0.00;FS=12.018;HaplotypeScore=14.9069;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.066;QD=24.43;ReadPosRankSum=2.946;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:3,164:170:99:4153,418,0 chrXIV 590833 . T C 4960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=206;Dels=0.00;FS=3.031;HaplotypeScore=14.8838;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.507;QD=24.08;ReadPosRankSum=2.414;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4960,514,0 chrXIV 590903 . T C 5109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.1598;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.169;QD=25.04;ReadPosRankSum=1.698;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:5109,514,0 chrXIV 590927 . C T 4672.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.1933;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=24.46;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4672,469,0 chrXIV 591058 . C T 4402.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.69;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4402,448,0 chrXIV 591189 . A C 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=0.423;QD=21.26;ReadPosRankSum=2.916;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2818,291,0 chrXIV 591210 . G C 3006 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=21.32;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3039,306,0 chrXIV 591230 . C G 2873 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.9465;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.12;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2906,294,0 chrXIV 591245 . A G 2407 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.2300;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.89;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2440,252,0 chrXIV 591334 . A T 2158 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.596;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;MQRankSum=-0.992;QD=20.95;ReadPosRankSum=1.698;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2191,228,0 chrXIV 591335 . T C 2147 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;MQRankSum=0.286;QD=20.84;ReadPosRankSum=1.698;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2180,228,0 chrXIV 591344 . G A 2215 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=20.32;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2248,228,0 chrXIV 591390 . T C 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-0.625;QD=19.90;ReadPosRankSum=1.647;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2461,249,0 chrXIV 591420 . T C 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=0.190;QD=20.11;ReadPosRankSum=2.410;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2507,258,0 chrXIV 591433 . T C 2543 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=20.84;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2576,267,0 chrXIV 591460 . A G 1870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=6.690;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.389;QD=19.08;ReadPosRankSum=1.697;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1903,201,0 chrXIV 591502 . G A 2566 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=23.12;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2599,264,0 chrXIV 591556 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.9044;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=0.907;QD=23.44;ReadPosRankSum=1.638;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3469,355,0 chrXIV 591830 . C T 4198.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4198,421,0 chrXIV 592102 . G A 4116.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.89;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4116,412,0 chrXIV 592518 . A G 5012.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.24;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:5012,508,0 chrXIV 592657 . T C 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=176;Dels=0.00;FS=8.200;HaplotypeScore=19.0289;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.927;QD=24.10;ReadPosRankSum=2.393;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4241,442,0 chrXIV 592909 . T C 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=3.933;HaplotypeScore=8.9564;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=1.560;QD=25.52;ReadPosRankSum=1.683;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3598,370,0 chrXIV 593099 . T C 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=4.342;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.242;QD=25.90;ReadPosRankSum=1.667;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2778,288,0 chrXIV 593213 . C T 4253.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=27.09;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4253,427,0 chrXIV 593575 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=4.025;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.155;QD=23.46;ReadPosRankSum=1.660;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3401,348,0 chrXIV 593736 . T C 4356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.376;QD=26.08;ReadPosRankSum=2.420;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4356,451,0 chrXIV 593883 . T C 4801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=3.056;HaplotypeScore=8.0517;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=-1.606;QD=25.01;ReadPosRankSum=1.696;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4801,493,0 chrXIV 594246 . G C 5222.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=16.6215;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.51;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5222,544,0 chrXIV 594474 . G T 3815.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.15;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3815,388,0 chrXIV 594531 . T C 3912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.9115;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.070;QD=24.92;ReadPosRankSum=1.710;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3912,403,0 chrXIV 594588 . T C 4250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.1357;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.093;QD=25.15;ReadPosRankSum=1.711;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:4250,439,0 chrXIV 594860 . A C 5230.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.0948;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.89;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5230,544,0 chrXIV 595123 . C T 2721 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.2845;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.08;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2754,274,0 chrXIV 595364 . A G 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=98;Dels=0.00;FS=3.147;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.482;QD=22.47;ReadPosRankSum=1.696;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2235,234,0 chrXIV 595434 . T C 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.261;QD=26.63;ReadPosRankSum=1.685;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3914,400,0 chrXIV 595549 . A T 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=153;Dels=0.00;FS=4.365;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.664;QD=24.65;ReadPosRankSum=1.642;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3772,382,0 chrXIV 595591 . A G 3915.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.0382;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.44;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3915,412,0 chrXIV 595762 . G A 4707.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.0248;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4707,484,0 chrXIV 595893 . T A 4259.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.5205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4259,433,0 chrXIV 595975 . G A 4043.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4043,423,0 chrXIV 596487 . A G 5787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=235;Dels=0.00;FS=3.123;HaplotypeScore=16.5737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.266;QD=24.63;ReadPosRankSum=1.688;SB=-3.115e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:5787,586,0 chrXIV 596700 . A T 4859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.1452;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.429;QD=24.05;ReadPosRankSum=1.629;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4859,511,0 chrXIV 597130 . A G 4866.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.7646;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.70;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4866,505,0 chrXIV 597333 . T C 5881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.10;ReadPosRankSum=1.661;SB=-3.224e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:5881,607,0 chrXIV 597474 . A G 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.6475;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.254;QD=23.33;ReadPosRankSum=1.675;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4246,445,0 chrXIV 597561 . A T 3731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.251;QD=23.03;ReadPosRankSum=2.343;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3731,385,0 chrXIV 597836 . T C 2949 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.78;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2982,312,0 chrXIV 598013 . A T 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=131.8824;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;MQRankSum=-1.332;QD=20.24;ReadPosRankSum=1.688;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3190,366,0 chrXIV 598176 . C T 1625 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=36.15;MQ0=0;QD=18.26;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1658,165,0 chrXIV 598179 . A C 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=83;Dels=0.00;FS=2.616;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=0;MQRankSum=-2.647;QD=17.52;ReadPosRankSum=2.916;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1487,153,0 chrXIV 598197 . C T 818 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.34;MQ0=1;QD=14.61;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:87:851,87,0 chrXIV 598209 . T C 440 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.32;MQ0=1;QD=9.36;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:54:473,54,0 chrXIV 598228 . A G 162.06 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=1;QD=2.38;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,68:68:21:195,21,0 chrXIV 598229 . T G 160.06 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=1;QD=2.35;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,68:68:21:193,21,0 chrXIV 598446 . G A 499.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.975;DP=151;Dels=0.00;FS=9.288;HaplotypeScore=20.3234;MLEAC=1;MLEAF=0.500;MQ=15.40;MQ0=55;MQRankSum=0.115;QD=3.30;ReadPosRankSum=-0.845;SB=-1.170e+02 GT:AD:DP:GQ:PL 0/1:78,72:151:99:529,0,465 chrXIV 598567 . G A 444 filter AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=9.35;MQ0=133;QD=2.55;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,173:174:54:477,54,0 chrXIV 598615 . C A 494.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.759;DP=186;Dels=0.00;FS=1.053;HaplotypeScore=14.1963;MLEAC=1;MLEAF=0.500;MQ=13.14;MQ0=124;MQRankSum=-0.271;QD=2.66;ReadPosRankSum=0.322;SB=-2.310e+02 GT:AD:DP:GQ:PL 0/1:83,97:186:99:524,0,272 chrXIV 598821 . C G 177.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=8.89;MQ0=140;MQRankSum=0.556;QD=1.01;ReadPosRankSum=0.522;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,81:175:99:207,0,207 chrXIV 598922 . A G 1360 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=9.6291;MLEAC=2;MLEAF=1.00;MQ=13.98;MQ0=128;MQRankSum=-1.611;QD=5.23;ReadPosRankSum=2.412;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:3,257:260:99:1393,156,0 chrXIV 598979 . T C 283.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.645;DP=287;Dels=0.00;FS=3.695;HaplotypeScore=28.3265;MLEAC=1;MLEAF=0.500;MQ=16.13;MQ0=129;MQRankSum=-3.947;QD=0.99;ReadPosRankSum=-1.024;SB=-9.401e+01 GT:AD:DP:GQ:PL 0/1:165,120:287:99:313,0,1265 chrXIV 599057 . C T 1365.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.439;DP=483;Dels=0.00;FS=0.000;HaplotypeScore=18.1629;MLEAC=1;MLEAF=0.500;MQ=16.95;MQ0=130;MQRankSum=-1.514;QD=2.83;ReadPosRankSum=0.863;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:259,222:483:99:1395,0,2032 chrXIV 599108 . G A 3595.01 filter AC=2;AF=1.00;AN=2;DP=386;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=16.47;MQ0=151;QD=9.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,386:386:99:3595,402,0 chrXIV 599198 . G A 1417.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.764;DP=301;Dels=0.00;FS=25.949;HaplotypeScore=15.7969;MLEAC=1;MLEAF=0.500;MQ=24.18;MQ0=47;MQRankSum=-1.978;QD=4.71;ReadPosRankSum=-1.257;SB=-7.390e+02 GT:AD:DP:GQ:PL 0/1:169,132:301:99:1447,0,2688 chrXIV 599232 . A G 4210.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.987;DP=445;Dels=0.00;FS=4.570;HaplotypeScore=23.8866;MLEAC=1;MLEAF=0.500;MQ=25.50;MQ0=2;MQRankSum=0.296;QD=9.46;ReadPosRankSum=1.397;SB=-8.860e+02 GT:AD:DP:GQ:PL 0/1:204,241:445:99:4210,0,3265 chrXIV 599240 . C T 2932.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;DP=423;Dels=0.00;FS=2.756;HaplotypeScore=11.1441;MLEAC=1;MLEAF=0.500;MQ=24.17;MQ0=19;MQRankSum=-2.699;QD=6.93;ReadPosRankSum=0.209;SB=-7.190e+02 GT:AD:DP:GQ:PL 0/1:230,188:423:99:2962,0,3890 chrXIV 599243 . G A 2986.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;DP=418;Dels=0.00;FS=5.086;HaplotypeScore=7.1460;MLEAC=1;MLEAF=0.500;MQ=23.90;MQ0=22;MQRankSum=-2.408;QD=7.14;ReadPosRankSum=0.196;SB=-7.260e+02 GT:AD:DP:GQ:PL 0/1:228,189:418:99:3016,0,3776 chrXIV 599314 . G A 5075.01 filter AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=15.1219;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=50;QD=16.80;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,302:302:99:5075,549,0 chrXIV 599377 . G A 907.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.192;DP=177;Dels=0.00;FS=1.929;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=31.11;MQ0=9;MQRankSum=-0.854;QD=5.12;ReadPosRankSum=0.186;SB=-5.840e+02 GT:AD:DP:GQ:PL 0/1:97,79:177:99:937,0,1418 chrXIV 599392 . A G 2448 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=178;Dels=0.00;FS=8.480;HaplotypeScore=6.8122;MLEAC=2;MLEAF=1.00;MQ=29.71;MQ0=12;MQRankSum=0.247;QD=13.75;ReadPosRankSum=3.080;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:4,174:178:99:2481,258,0 chrXIV 599441 . T C 1245 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=136;Dels=0.00;FS=7.659;HaplotypeScore=93.1239;MLEAC=2;MLEAF=1.00;MQ=20.95;MQ0=31;MQRankSum=-1.105;QD=9.15;ReadPosRankSum=1.600;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:1,135:136:99:1278,135,0 chrXIV 599501 . G A 389.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.917;DP=100;Dels=0.00;FS=1.872;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=24.11;MQ0=23;MQRankSum=-0.068;QD=3.89;ReadPosRankSum=1.395;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:54,45:100:99:419,0,560 chrXIV 599550 . T C 2110 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=139;Dels=0.00;FS=5.400;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=33;MQRankSum=-2.686;QD=15.18;ReadPosRankSum=2.934;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2143,228,0 chrXIV 599551 . G A 2248 filter AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=33;QD=16.06;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2281,234,0 chrXIV 599612 . T G 2504 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.63;MQ0=24;MQRankSum=0.848;QD=14.99;ReadPosRankSum=1.708;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:2537,264,0 chrXIV 599633 . G A 2102 filter AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=7;QD=15.01;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2135,213,0 chrXIV 599654 . A G 1153 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.389;DP=105;Dels=0.00;FS=38.641;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=6;MQRankSum=-1.863;QD=10.98;ReadPosRankSum=4.198;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:7,98:105:99:1186,123,0 chrXIV 599709 . T G 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;DP=66;Dels=0.00;FS=10.025;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.82;MQ0=5;MQRankSum=0.819;QD=0.82;ReadPosRankSum=1.690;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:29,37:66:84:84,0,306 chrXIV 599714 . G A 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.300;DP=71;Dels=0.00;FS=11.690;HaplotypeScore=9.7260;MLEAC=1;MLEAF=0.500;MQ=27.23;MQ0=5;MQRankSum=0.724;QD=0.65;ReadPosRankSum=-0.065;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:34,37:71:76:76,0,351 chrXIV 599723 . G A 735 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.737;DP=88;Dels=0.00;FS=1.905;HaplotypeScore=29.3270;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=7;MQRankSum=2.247;QD=8.35;ReadPosRankSum=-3.601;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:5,83:88:81:768,81,0 chrXIV 599727 . A G 635.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.353;DP=94;Dels=0.00;FS=3.295;HaplotypeScore=34.0645;MLEAC=1;MLEAF=0.500;MQ=30.01;MQ0=7;MQRankSum=0.053;QD=6.76;ReadPosRankSum=-2.960;SB=-5.450e+02 GT:AD:DP:GQ:PL 0/1:23,71:94:78:665,0,78 chrXIV 599736 . A G 1235 filter AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=23.9076;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=12;QD=11.03;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,86:112:99:1268,132,0 chrXIV 599823 . C T 2341.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;DP=287;Dels=0.00;FS=4.211;HaplotypeScore=17.7381;MLEAC=1;MLEAF=0.500;MQ=40.19;MQ0=28;MQRankSum=0.890;QD=8.16;ReadPosRankSum=-2.664;SB=-1.181e+03 GT:AD:DP:GQ:PL 0/1:133,151:287:99:2371,0,2334 chrXIV 599886 . T G 1019.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.063;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.3219;MLEAC=1;MLEAF=0.500;MQ=31.38;MQ0=15;MQRankSum=2.323;QD=5.96;ReadPosRankSum=1.615;SB=-3.480e+02 GT:AD:DP:GQ:PL 0/1:102,68:171:99:1049,0,1480 chrXIV 599887 . A G 1051.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.971;DP=173;Dels=0.00;FS=0.623;HaplotypeScore=16.6880;MLEAC=1;MLEAF=0.500;MQ=31.23;MQ0=15;MQRankSum=2.132;QD=6.08;ReadPosRankSum=1.456;SB=-3.760e+02 GT:AD:DP:GQ:PL 0/1:103,68:173:99:1081,0,1407 chrXIV 599892 . G T 1009.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;DP=166;Dels=0.00;FS=1.379;HaplotypeScore=16.1451;MLEAC=1;MLEAF=0.500;MQ=31.22;MQ0=13;MQRankSum=1.711;QD=6.08;ReadPosRankSum=0.766;SB=-3.920e+02 GT:AD:DP:GQ:PL 0/1:97,68:166:99:1039,0,1491 chrXIV 599920 . C T 1116.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.019;DP=135;Dels=0.00;FS=14.987;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.73;MQ0=13;MQRankSum=-1.994;QD=8.27;ReadPosRankSum=0.161;SB=-2.050e+02 GT:AD:DP:GQ:PL 0/1:50,85:135:99:1146,0,723 chrXIV 599921 . A G 1064.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.355;DP=134;Dels=0.00;FS=13.102;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.65;MQ0=13;MQRankSum=-2.364;QD=7.94;ReadPosRankSum=0.420;SB=-2.040e+02 GT:AD:DP:GQ:PL 0/1:50,84:134:99:1094,0,757 chrXIV 599947 . C T 1040.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.799;DP=127;Dels=0.00;FS=32.309;HaplotypeScore=4.2553;MLEAC=1;MLEAF=0.500;MQ=26.82;MQ0=14;MQRankSum=-1.242;QD=8.19;ReadPosRankSum=1.468;SB=-3.795e+02 GT:AD:DP:GQ:PL 0/1:38,88:127:99:1070,0,372 chrXIV 599953 . T C 1237.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.147;DP=139;Dels=0.00;FS=24.634;HaplotypeScore=4.2553;MLEAC=1;MLEAF=0.500;MQ=30.68;MQ0=11;MQRankSum=-1.107;QD=8.90;ReadPosRankSum=1.763;SB=-6.830e+02 GT:AD:DP:GQ:PL 0/1:39,100:139:99:1267,0,288 chrXIV 599974 . A G 401.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.477;DP=171;Dels=0.00;FS=54.454;HaplotypeScore=6.6181;MLEAC=1;MLEAF=0.500;MQ=37.19;MQ0=10;MQRankSum=-1.222;QD=2.35;ReadPosRankSum=-1.335;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:126,44:171:99:431,0,1734 chrXIV 599988 . C T 2848 filter AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.7741;MLEAC=2;MLEAF=1.00;MQ=37.19;MQ0=10;QD=15.82;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2881,292,0 chrXIV 599990 . C T 2941 filter AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.9583;MLEAC=2;MLEAF=1.00;MQ=37.04;MQ0=10;QD=16.07;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:2974,292,0 chrXIV 599999 . A G 534.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.969;DP=216;Dels=0.00;FS=47.755;HaplotypeScore=12.0797;MLEAC=1;MLEAF=0.500;MQ=35.43;MQ0=14;MQRankSum=-1.098;QD=2.47;ReadPosRankSum=-0.338;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:149,65:216:99:564,0,1965 chrXIV 600027 . C T 1328.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.811;DP=289;Dels=0.00;FS=10.889;HaplotypeScore=13.5658;MLEAC=1;MLEAF=0.500;MQ=37.18;MQ0=14;MQRankSum=0.521;QD=4.60;ReadPosRankSum=-0.182;SB=-6.480e+02 GT:AD:DP:GQ:PL 0/1:183,106:289:99:1358,0,2321 chrXIV 600034 . G T 2331.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.009;DP=304;Dels=0.00;FS=4.713;HaplotypeScore=12.1841;MLEAC=1;MLEAF=0.500;MQ=37.35;MQ0=15;MQRankSum=-1.449;QD=7.67;ReadPosRankSum=0.264;SB=-1.453e+03 GT:AD:DP:GQ:PL 0/1:118,185:304:99:2361,0,1554 chrXIV 600064 . T C 3664.01 filter AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=32.87;MQ0=29;QD=14.89;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:3664,381,0 chrXIV 600071 . A T 3613.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=243;Dels=0.00;FS=6.986;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=32.77;MQ0=38;MQRankSum=-2.174;QD=14.87;ReadPosRankSum=2.402;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:2,241:243:99:3613,375,0 chrXIV 600101 . C T 580.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840;DP=217;Dels=0.00;FS=21.434;HaplotypeScore=8.6208;MLEAC=1;MLEAF=0.500;MQ=32.47;MQ0=30;MQRankSum=-4.014;QD=2.67;ReadPosRankSum=-2.320;SB=-3.580e+02 GT:AD:DP:GQ:PL 0/1:132,83:217:99:610,0,2034 chrXIV 600108 . C T 1623.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;DP=198;Dels=0.00;FS=19.103;HaplotypeScore=5.3972;MLEAC=1;MLEAF=0.500;MQ=31.12;MQ0=29;MQRankSum=4.391;QD=8.20;ReadPosRankSum=3.407;SB=-7.930e+02 GT:AD:DP:GQ:PL 0/1:77,119:198:99:1653,0,569 chrXIV 600114 . T C 318.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;DP=177;Dels=0.00;FS=29.290;HaplotypeScore=3.0311;MLEAC=1;MLEAF=0.500;MQ=29.84;MQ0=29;MQRankSum=-4.576;QD=1.80;ReadPosRankSum=-2.773;SB=-5.101e+01 GT:AD:DP:GQ:PL 0/1:109,68:177:99:348,0,1503 chrXIV 600149 . A T 1993 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=25.48;MQ0=17;QD=14.13;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2026,225,0 chrXIV 600153 . T G 883.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.080;DP=144;Dels=0.00;FS=64.648;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=25.51;MQ0=22;MQRankSum=-1.422;QD=6.13;ReadPosRankSum=1.784;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:63,80:144:99:913,0,657 chrXIV 600155 . A G 1996 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.55;MQ0=21;MQRankSum=-1.266;QD=14.26;ReadPosRankSum=1.703;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2029,231,0 chrXIV 600165 . C G 2487 filter AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=12;QD=17.51;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2520,279,0 chrXIV 600188 . G A 156.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;DP=178;Dels=0.00;FS=14.196;HaplotypeScore=11.8737;MLEAC=1;MLEAF=0.500;MQ=32.08;MQ0=9;MQRankSum=-2.829;QD=0.88;ReadPosRankSum=-1.190;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:148,29:178:99:186,0,2637 chrXIV 600205 . C T 402.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.422;DP=208;Dels=0.00;FS=11.565;HaplotypeScore=8.8784;MLEAC=1;MLEAF=0.500;MQ=31.97;MQ0=9;MQRankSum=-1.913;QD=1.93;ReadPosRankSum=-0.976;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:165,43:208:99:432,0,2845 chrXIV 600236 . G A 1204.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.912;DP=274;Dels=0.00;FS=6.532;HaplotypeScore=17.3397;MLEAC=1;MLEAF=0.500;MQ=32.37;MQ0=12;MQRankSum=1.458;QD=4.39;ReadPosRankSum=-1.743;SB=-6.440e+02 GT:AD:DP:GQ:PL 0/1:185,87:274:99:1234,0,2775 chrXIV 600259 . A G 4658.01 filter AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=32.23;MQ0=10;QD=18.12;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:4658,481,0 chrXIV 600272 . G A 1480.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.280;DP=229;Dels=0.00;FS=37.362;HaplotypeScore=8.0168;MLEAC=1;MLEAF=0.500;MQ=30.56;MQ0=23;MQRankSum=4.063;QD=6.46;ReadPosRankSum=2.395;SB=-4.810e+02 GT:AD:DP:GQ:PL 0/1:132,97:229:99:1510,0,1323 chrXIV 600283 . A G 1449.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;DP=212;Dels=0.00;FS=26.759;HaplotypeScore=7.4875;MLEAC=1;MLEAF=0.500;MQ=29.19;MQ0=32;MQRankSum=5.275;QD=6.83;ReadPosRankSum=1.354;SB=-5.210e+02 GT:AD:DP:GQ:PL 0/1:109,103:212:99:1479,0,900 chrXIV 600362 . A G 1721 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.667;DP=171;Dels=0.00;FS=2.609;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=20.74;MQ0=83;MQRankSum=1.909;QD=10.06;ReadPosRankSum=2.920;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:4,167:171:99:1754,180,0 chrXIV 600410 . G A 3133 filter AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=24.10;MQ0=68;QD=15.66;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3166,324,0 chrXIV 600458 . T C 2590 filter AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=28;QD=15.42;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:2623,273,0 chrXIV 600480 . G A 1702 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.76;MQ0=6;QD=16.52;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1735,171,0 chrXIV 600494 . C T 167.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.554;DP=90;Dels=0.00;FS=62.201;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=22.03;MQ0=11;MQRankSum=-4.357;QD=1.86;ReadPosRankSum=0.567;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,45:90:99:197,0,871 chrXIV 600497 . A T 137.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.650;DP=92;Dels=0.00;FS=58.666;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=21.58;MQ0=14;MQRankSum=-4.086;QD=1.49;ReadPosRankSum=0.005;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,45:92:99:167,0,834 chrXIV 600500 . C T 1175 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.88;MQ0=18;QD=13.06;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1208,120,0 chrXIV 600544 . A G 418 filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=14.63;MQ0=88;QD=3.70;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:48:451,48,0 chrXIV 600716 . G C 699 filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=18.31;MQ0=77;QD=6.08;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,112:115:75:732,75,0 chrXIV 600749 . A G 478 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.99;MQ0=103;QD=3.76;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:1,125:127:51:511,51,0 chrXIV 600811 . G T 1314 filter AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=21.09;MQ0=101;QD=7.34;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,178:179:99:1347,135,0 chrXIV 600876 . A C 1905 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.873;DP=140;Dels=0.00;FS=2.563;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=26.20;MQ0=37;MQRankSum=-2.442;QD=13.61;ReadPosRankSum=2.442;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:3,137:140:99:1938,175,0 chrXIV 600904 . A G 539.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;DP=113;Dels=0.01;FS=68.463;HaplotypeScore=5.7287;MLEAC=1;MLEAF=0.500;MQ=27.86;MQ0=10;MQRankSum=5.338;QD=4.77;ReadPosRankSum=5.179;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:68,44:112:99:569,0,752 chrXIV 600908 . A G 655.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.976;DP=109;Dels=0.02;FS=63.677;HaplotypeScore=9.8750;MLEAC=1;MLEAF=0.500;MQ=29.34;MQ0=12;MQRankSum=-4.692;QD=6.01;ReadPosRankSum=-3.894;SB=-1.480e+02 GT:AD:DP:GQ:PL 0/1:49,57:107:99:685,0,561 chrXIV 600923 . A T 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;DP=117;Dels=0.00;FS=40.349;HaplotypeScore=21.4426;MLEAC=1;MLEAF=0.500;MQ=34.60;MQ0=16;MQRankSum=-5.817;QD=0.57;ReadPosRankSum=0.596;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,42:117:97:97,0,902 chrXIV 600928 . G C 1099.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.038;DP=126;Dels=0.00;FS=22.077;HaplotypeScore=16.5623;MLEAC=1;MLEAF=0.500;MQ=34.61;MQ0=18;MQRankSum=6.623;QD=8.72;ReadPosRankSum=-1.148;SB=-5.170e+02 GT:AD:DP:GQ:PL 0/1:43,81:126:22:1129,0,22 chrXIV 600943 . T C 90.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.701;DP=160;Dels=0.00;FS=16.234;HaplotypeScore=7.6218;MLEAC=1;MLEAF=0.500;MQ=32.70;MQ0=28;MQRankSum=-3.994;QD=0.56;ReadPosRankSum=0.845;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:98,62:160:99:120,0,1492 chrXIV 600975 . G A 2253 filter AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.88;MQ0=41;QD=13.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2286,240,0 chrXIV 601081 . C T 359 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.10;MQ0=37;QD=5.20;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:42:392,42,0 chrXIV 601085 . A G 360 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.41;MQ0=34;QD=5.54;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:42:393,42,0 chrXIV 601112 . T G 350 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=34;Dels=0.00;FS=8.239;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.64;MQ0=14;MQRankSum=-1.387;QD=10.29;ReadPosRankSum=1.561;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:1,33:34:39:383,39,0 chrXIV 601195 . T G 4244.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.6888;MLEAC=2;MLEAF=1.00;MQ=35.01;MQ0=14;MQRankSum=1.277;QD=18.53;ReadPosRankSum=1.683;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:4244,450,0 chrXIV 601231 . C T 2255 filter AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=19.9901;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=30;QD=13.67;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,159:165:99:2288,243,0 chrXIV 601255 . A G 1257 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=95;Dels=0.00;FS=22.719;HaplotypeScore=3.8838;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=37;MQRankSum=-0.702;QD=13.23;ReadPosRankSum=2.844;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1290,129,0 chrXIV 601265 . A G 972 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.9048;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=33;QD=12.00;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1005,108,0 chrXIV 601291 . A G 102.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.001;DP=34;Dels=0.00;FS=34.776;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.64;MQ0=19;MQRankSum=-0.674;QD=3.01;ReadPosRankSum=3.001;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,29:34:15:135,15,0 chrXIV 601379 . A C 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.09;MQ0=14;QD=1.52;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:6:57,6,0 chrXIV 601445 . T C 1541.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.316;DP=206;Dels=0.00;FS=2.798;HaplotypeScore=3.0453;MLEAC=1;MLEAF=0.500;MQ=37.87;MQ0=34;MQRankSum=1.265;QD=7.48;ReadPosRankSum=0.192;SB=-5.670e+02 GT:AD:DP:GQ:PL 0/1:98,108:206:99:1571,0,1250 chrXIV 601465 . G A 4013.01 filter AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=28;QD=18.08;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4013,400,0 chrXIV 601469 . C T 3979.01 filter AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=27;QD=17.08;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:3979,403,0 chrXIV 601544 . T C 2467 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=29;MQRankSum=0.962;QD=19.27;ReadPosRankSum=1.697;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2500,249,0 chrXIV 601606 . G A 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.782;DP=94;Dels=0.00;FS=1.067;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=18.10;MQ0=40;MQRankSum=-1.435;QD=0.62;ReadPosRankSum=1.652;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:49,44:94:88:88,0,421 chrXIV 601642 . T C 2119 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=148;Dels=0.00;FS=3.962;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.06;MQ0=26;MQRankSum=1.619;QD=14.32;ReadPosRankSum=1.675;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2152,246,0 chrXIV 601652 . G A 2541 filter AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.80;MQ0=18;QD=15.78;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2574,285,0 chrXIV 601654 . C T 2735 filter AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=18;QD=16.48;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2768,303,0 chrXIV 601682 . G A 5291.01 filter AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.58;MQ0=8;QD=21.77;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5291,561,0 chrXIV 601776 . A G 1388.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;DP=187;Dels=0.00;FS=1.216;HaplotypeScore=120.7847;MLEAC=1;MLEAF=0.500;MQ=29.80;MQ0=22;MQRankSum=1.817;QD=7.42;ReadPosRankSum=0.393;SB=-7.620e+02 GT:AD:DP:GQ:PL 0/1:97,90:187:99:1418,0,1145 chrXIV 601790 . C T 2411 filter AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=109.8862;MLEAC=2;MLEAF=1.00;MQ=24.46;MQ0=33;QD=14.98;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,153:161:99:2444,264,0 chrXIV 601842 . A G 1575 filter AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=21.84;MQ0=33;QD=8.75;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:2,178:180:99:1608,174,0 chrXIV 601869 . T C 2145 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.6366;MLEAC=2;MLEAF=1.00;MQ=23.34;MQ0=17;MQRankSum=-2.020;QD=9.88;ReadPosRankSum=2.413;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:2,214:217:99:2178,237,0 chrXIV 602111 . G A 5171.01 filter AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=12.4525;MLEAC=2;MLEAF=1.00;MQ=36.48;MQ0=8;QD=19.37;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:5171,532,0 chrXIV 602134 . T C 6294.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=269;Dels=0.00;FS=4.067;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=15;MQRankSum=-1.219;QD=23.40;ReadPosRankSum=1.718;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:1,264:269:99:6294,634,0 chrXIV 602249 . T G 1116 filter AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.33;MQ0=16;QD=5.19;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,215:215:99:1149,129,0 chrXIV 602250 . C T 1190 filter AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.33;MQ0=16;QD=5.53;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,215:215:99:1223,129,0 chrXIV 602260 . T G 973 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.40;MQ0=22;MQRankSum=-0.235;QD=4.27;ReadPosRankSum=1.698;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:1,227:228:99:1006,105,0 chrXIV 602262 . T A 943 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.77;MQ0=22;MQRankSum=-1.732;QD=4.08;ReadPosRankSum=1.682;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:1,230:231:99:976,105,0 chrXIV 602277 . A G 1130 filter AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=21.94;MQ0=23;QD=4.54;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:1163,120,0 chrXIV 602296 . A G 2319 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.417;DP=259;Dels=0.00;FS=14.816;HaplotypeScore=15.4649;MLEAC=2;MLEAF=1.00;MQ=33.07;MQ0=13;MQRankSum=1.048;QD=8.95;ReadPosRankSum=2.114;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:6,251:259:99:2352,252,0 chrXIV 602396 . A G 204.01 filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=105.9509;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=10;QD=1.48;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:27:237,27,0 chrXIV 602521 . C G 2146 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=20.5445;MLEAC=2;MLEAF=1.00;MQ=38.54;MQ0=0;QD=12.55;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,166:171:99:2179,231,0 chrXIV 602658 . T C 3078 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=18.1404;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.23;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3111,316,0 chrXIV 602860 . A T 5950.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=12.3188;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.90;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5950,616,0 chrXIV 603545 . A G 7707.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.70;SB=-3.849e+03 GT:AD:DP:GQ:PL 1/1:0,312:312:99:7707,772,0 chrXIV 603709 . G A 8479.01 PASS AC=2;AF=1.00;AN=2;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=24.58;SB=-4.143e+03 GT:AD:DP:GQ:PL 1/1:0,345:345:99:8479,833,0 chrXIV 603842 . C T 5752.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.7137;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.79;SB=-2.988e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5752,580,0 chrXIV 604247 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.1500;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.32;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2890,291,0 chrXIV 604471 . A G 259 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-2.800e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:30:292,30,0 chrXIV 604879 . T C 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.6944;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.083;QD=24.41;ReadPosRankSum=1.678;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1595,165,0 chrXIV 605032 . C G 2867 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.02;FS=0.000;HaplotypeScore=15.4845;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=23.31;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2900,300,0 chrXIV 605755 . T A 83.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.179;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.762;QD=9.28;ReadPosRankSum=1.666;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,7:9:12:116,12,0 chrXIV 606872 . G A 5928.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.0037;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5928,580,0 chrXIV 610512 . A C 3029 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.11;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3062,318,0 chrXIV 611020 . T C 3986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=162;Dels=0.00;FS=3.176;HaplotypeScore=8.8634;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.386;QD=24.60;ReadPosRankSum=1.710;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3986,412,0 chrXIV 611511 . C T 4541.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.19;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4541,448,0 chrXIV 612523 . T G 4843.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.04;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4843,487,0 chrXIV 612847 . A T 4591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=191;Dels=0.00;FS=10.635;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.616;QD=24.04;ReadPosRankSum=2.795;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:4591,475,0 chrXIV 613192 . C G 4373.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.16;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4373,442,0 chrXIV 613268 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.39;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3509,343,0 chrXIV 613373 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.832;QD=26.03;ReadPosRankSum=1.080;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:4034,397,0 chrXIV 613459 . A G 3810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.023;QD=25.23;ReadPosRankSum=1.686;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3810,385,0 chrXIV 614336 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-1.584;QD=22.95;ReadPosRankSum=1.658;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3246,336,0 chrXIV 614340 . G A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.59;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3374,340,0 chrXIV 614500 . G A 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.9713;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.915;QD=25.34;ReadPosRankSum=-0.155;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:3200,319,0 chrXIV 614559 . T C 1774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=3.259;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=0.706;QD=16.13;ReadPosRankSum=1.476;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:1807,219,0 chrXIV 614560 . C T 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=110;Dels=0.00;FS=3.432;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=0.738;QD=16.82;ReadPosRankSum=1.347;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:1883,228,0 chrXIV 614583 . T C 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.010;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;MQRankSum=0.000;QD=19.61;ReadPosRankSum=1.704;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2465,252,0 chrXIV 614589 . A G 2334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.046;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;MQRankSum=0.352;QD=18.98;ReadPosRankSum=1.704;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2367,249,0 chrXIV 614760 . T A 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=130;Dels=0.00;FS=5.924;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.264;QD=24.15;ReadPosRankSum=2.946;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:3172,330,0 chrXIV 614792 . A G 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=129;Dels=0.00;FS=6.688;HaplotypeScore=4.1659;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=0.505;QD=24.73;ReadPosRankSum=2.412;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3223,333,0 chrXIV 614815 . G T 3020 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=21.88;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3053,321,0 chrXIV 614817 . T C 2985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=144;Dels=0.00;FS=5.988;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-0.168;QD=20.73;ReadPosRankSum=2.909;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3018,324,0 chrXIV 614958 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.88;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3343,334,0 chrXIV 614988 . A T 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=141;Dels=0.00;FS=3.024;HaplotypeScore=5.8803;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.323;QD=22.64;ReadPosRankSum=2.293;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3225,330,0 chrXIV 615001 . T G 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=142;Dels=0.00;FS=6.240;HaplotypeScore=7.8745;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-0.305;QD=22.66;ReadPosRankSum=2.328;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3250,336,0 chrXIV 615324 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5752;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.94;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2618,264,0 chrXIV 615522 . A G 4209.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.6954;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.98;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4209,427,0 chrXIV 615555 . G A 3995.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=26.81;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3995,403,0 chrXIV 615762 . A G 4967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=205;Dels=0.00;FS=2.897;HaplotypeScore=12.7106;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.283;QD=24.23;ReadPosRankSum=2.377;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4967,496,0 chrXIV 616014 . A G 2826 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=22.25;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2859,291,0 chrXIV 616020 . C T 2828 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.62;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2861,291,0 chrXIV 616069 . A G 2909 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.87;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2942,309,0 chrXIV 616166 . A G 2448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.848;DP=139;Dels=0.00;FS=2.923;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=0.999;QD=17.61;ReadPosRankSum=1.831;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2481,279,0 chrXIV 616170 . T A 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.051;QD=17.49;ReadPosRankSum=2.875;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2429,270,0 chrXIV 616416 . A G 4581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=178;Dels=0.00;FS=3.060;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.709;QD=25.74;ReadPosRankSum=1.693;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:4581,460,0 chrXIV 616622 . G A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.91;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3299,325,0 chrXIV 617566 . A G 2308 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2341,240,0 chrXIV 618448 . A G 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.733;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.268;QD=21.82;ReadPosRankSum=2.919;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1931,198,0 chrXIV 618475 . G A 1385 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.88;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1418,144,0 chrXIV 618548 . G A 1807 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=26.97;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1840,180,0 chrXIV 619089 . G T 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.449;DP=225;Dels=0.00;FS=12.308;HaplotypeScore=8.5579;MLEAC=1;MLEAF=0.500;MQ=44.37;MQ0=0;MQRankSum=-8.146;QD=0.15;ReadPosRankSum=-7.477;SB=-6.150e+02 GT:AD:DP:GQ:PL 0/1:141,82:225:63:63,0,2446 chrXIV 619092 . G T 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;DP=228;Dels=0.00;FS=16.698;HaplotypeScore=6.6463;MLEAC=1;MLEAF=0.500;MQ=43.93;MQ0=0;MQRankSum=-8.531;QD=0.11;ReadPosRankSum=-6.185;SB=-6.360e+02 GT:AD:DP:GQ:PL 0/1:139,88:228:54:54,0,2455 chrXIV 619096 . T G 76.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.448;DP=238;Dels=0.00;FS=25.015;HaplotypeScore=5.0255;MLEAC=1;MLEAF=0.500;MQ=42.74;MQ0=0;MQRankSum=-7.891;QD=0.32;ReadPosRankSum=-4.551;SB=-9.050e+02 GT:AD:DP:GQ:PL 0/1:137,101:238:99:106,0,2569 chrXIV 619110 . T A 404.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.686;DP=249;Dels=0.00;FS=26.473;HaplotypeScore=9.0688;MLEAC=1;MLEAF=0.500;MQ=40.07;MQ0=0;MQRankSum=-5.489;QD=1.62;ReadPosRankSum=3.413;SB=-1.112e+03 GT:AD:DP:GQ:PL 0/1:106,142:249:99:434,0,1685 chrXIV 619113 . T A 496.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.065;DP=253;Dels=0.00;FS=31.909;HaplotypeScore=11.1596;MLEAC=1;MLEAF=0.500;MQ=40.19;MQ0=0;MQRankSum=-5.556;QD=1.96;ReadPosRankSum=4.765;SB=-1.216e+03 GT:AD:DP:GQ:PL 0/1:100,151:253:99:526,0,1483 chrXIV 619117 . G T 625.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.140;DP=257;Dels=0.00;FS=25.834;HaplotypeScore=13.3109;MLEAC=1;MLEAF=0.500;MQ=40.17;MQ0=0;MQRankSum=-3.430;QD=2.43;ReadPosRankSum=6.179;SB=-1.659e+03 GT:AD:DP:GQ:PL 0/1:91,166:257:99:655,0,1199 chrXIV 619135 . G C 281.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.604;DP=263;Dels=0.00;FS=33.254;HaplotypeScore=15.0002;MLEAC=1;MLEAF=0.500;MQ=40.61;MQ0=0;MQRankSum=-3.989;QD=1.07;ReadPosRankSum=-10.994;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:204,58:263:99:311,0,1400 chrXIV 619281 . G C 4160.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=19.3285;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=21.78;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4160,418,0 chrXIV 621428 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.32;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3343,328,0 chrXIV 625861 . C T 3889.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.59;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3889,391,0 chrXIV 627220 . A G 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.966;QD=24.52;ReadPosRankSum=1.699;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2608,264,0 chrXIV 628790 . C T 171.06 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.16;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,12:13:21:204,21,0 chrXIV 632162 . A G 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=5.516;HaplotypeScore=15.1878;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=1;MQRankSum=-1.281;QD=24.64;ReadPosRankSum=1.708;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3646,370,0 chrXIV 632192 . T G 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=3;MQRankSum=-1.417;QD=22.19;ReadPosRankSum=1.710;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3484,355,0 chrXIV 632449 . C T 4313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.162;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.0857;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=2;MQRankSum=1.335;QD=22.23;ReadPosRankSum=-1.191;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4313,442,0 chrXIV 646869 . T G 4055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.274;DP=180;Dels=0.00;FS=8.822;HaplotypeScore=16.3293;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.298;QD=22.53;ReadPosRankSum=3.342;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:4,175:180:99:4055,421,0 chrXIV 647174 . G A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.5819;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.46;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3375,340,0 chrXIV 648908 . T C 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=142;Dels=0.00;FS=3.979;HaplotypeScore=14.4337;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.396;QD=23.97;ReadPosRankSum=1.707;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3404,351,0 chrXIV 651849 . C T 817 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=48.9750;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=14.59;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,53:56:87:850,87,0 chrXIV 651964 . G A 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.903;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=0.611;QD=19.09;ReadPosRankSum=3.642;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:5,63:68:99:1331,129,0 chrXIV 652238 . G A 2438 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.84;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2471,252,0 chrXIV 653557 . C T 5096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=3.304;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.270;QD=25.61;ReadPosRankSum=0.392;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:5096,511,0 chrXIV 653593 . G A 4564.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.7771;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.02;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4564,466,0 chrXIV 653635 . T C 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.6438;MLEAC=2;MLEAF=1.00;MQ=60.01;MQ0=0;MQRankSum=-1.407;QD=22.35;ReadPosRankSum=1.581;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3621,376,0 chrXIV 655138 . C T 6658.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=14.2928;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.39;SB=-3.890e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:6658,661,0 chrXIV 655174 . T C 6215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.096;QD=24.66;ReadPosRankSum=1.718;SB=-3.188e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:6215,640,0 chrXIV 655315 . A G 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.691;QD=19.71;ReadPosRankSum=1.613;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4020,415,0 chrXIV 655324 . G A 4585.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.7287;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.03;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4585,457,0 chrXIV 655447 . G A 4699.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.1199;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.47;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4699,469,0 chrXIV 657133 . T C 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.053;DP=174;Dels=0.00;FS=30.706;HaplotypeScore=10.5891;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=2.593;QD=22.36;ReadPosRankSum=4.053;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:6,167:174:99:3891,388,0 chrXIV 657202 . C A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.0067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3609,370,0 chrXIV 657547 . A G 4539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=202;Dels=0.00;FS=6.065;HaplotypeScore=21.3724;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=0.513;QD=22.47;ReadPosRankSum=2.945;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:3,197:202:99:4539,484,0 chrXIV 657606 . A C 4302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.156;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.1719;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=-0.828;QD=19.92;ReadPosRankSum=2.415;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:2,210:216:99:4302,421,0 chrXIV 657610 . A G 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=213;Dels=0.00;FS=6.733;HaplotypeScore=7.3821;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-1.456;QD=20.05;ReadPosRankSum=2.379;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:2,208:213:99:4271,445,0 chrXIV 657739 . A T 4727.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4727,475,0 chrXIV 658984 . T G 134.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.763;DP=171;Dels=0.00;FS=242.722;HaplotypeScore=37.1414;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-0.506;QD=0.78;ReadPosRankSum=-4.512;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,62:171:99:164,0,1943 chrXIV 660205 . T C 3897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=3.579;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.550;QD=22.79;ReadPosRankSum=1.712;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3897,414,0 chrXIV 661859 . A G 4112.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4112,421,0 chrXIV 661983 . C T 4628.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.7316;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.75;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4628,463,0 chrXIV 662512 . C A 5486.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=25.05;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5486,547,0 chrXIV 664048 . T C 5014.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.65;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:5014,523,0 chrXIV 665036 . G T 2105 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2138,219,0 chrXIV 665097 . T A 1961 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1994,192,0 chrXIV 667189 . C T 1222 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.44;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1255,132,0 chrXIV 667216 . C T 1682 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.74;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1715,171,0 chrXIV 668304 . A T 2750 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.12;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2783,274,0 chrXIV 669316 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3553,370,0 chrXIV 671892 . C T 4816.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.03;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4816,478,0 chrXIV 672281 . T C 2300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=3.188;HaplotypeScore=7.3243;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.416;QD=23.00;ReadPosRankSum=1.697;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2333,243,0 chrXIV 676368 . A G 4423.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.97;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4423,451,0 chrXIV 676470 . C T 3993.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8902;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.27;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3993,397,0 chrXIV 676652 . A G 4357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=173;Dels=0.00;FS=7.063;HaplotypeScore=12.7224;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.902;QD=25.19;ReadPosRankSum=2.421;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4357,442,0 chrXIV 676731 . G A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.87;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3681,361,0 chrXIV 676834 . A G 4418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=167;Dels=0.00;FS=6.006;HaplotypeScore=12.9993;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.230;QD=26.46;ReadPosRankSum=2.073;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:3,163:167:99:4418,439,0 chrXIV 676905 . G A 3205.99 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9049;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=23.57;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3239,322,0 chrXIV 676917 . A C 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=126;Dels=0.00;FS=2.833;HaplotypeScore=5.8207;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.224;QD=23.34;ReadPosRankSum=2.411;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2974,301,0 chrXIV 677203 . T C 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=169;Dels=0.00;FS=5.377;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-0.970;QD=21.17;ReadPosRankSum=2.887;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3577,358,0 chrXIV 677207 . G A 3713.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.84;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3713,367,0 chrXIV 677352 . G A 2688 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.79;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2721,273,0 chrXIV 677422 . C T 3858.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=23.81;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3858,385,0 chrXIV 677438 . T A 3870.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.04;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3870,385,0 chrXIV 677530 . G T 3338.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.68;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3338,331,0 chrXIV 677609 . C T 3835.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=26.27;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3835,385,0 chrXIV 677649 . C G 3422.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=25.73;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3422,343,0 chrXIV 677799 . A G 4074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=178;Dels=0.00;FS=6.095;HaplotypeScore=4.8986;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=1.381;QD=22.89;ReadPosRankSum=2.380;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4074,430,0 chrXIV 677807 . G A 4019.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.3213;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.84;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4019,400,0 chrXIV 677841 . A G 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=1.048;QD=22.19;ReadPosRankSum=1.711;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3617,370,0 chrXIV 677958 . C T 3581.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=21.32;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3581,364,0 chrXIV 677964 . G A 3282.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=20.26;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3282,342,0 chrXIV 677985 . G A 2790 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.65;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2823,286,0 chrXIV 678027 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=23.14;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2925,289,0 chrXIV 678108 . T C 2756 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.1205;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.26;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2789,282,0 chrXIV 678144 . C T 2770 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=19.65;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2803,282,0 chrXIV 678304 . G A 2912 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.41;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2945,306,0 chrXIV 678306 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=21.49;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2913,289,0 chrXIV 678322 . T C 2424 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.87;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2457,249,0 chrXIV 678582 . T C 523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=0.727;QD=16.87;ReadPosRankSum=1.621;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:60:556,60,0 chrXIV 678759 . A G 2337 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=27.49;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2370,240,0 chrXIV 678891 . T C 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=157;Dels=0.00;FS=3.330;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.369;QD=23.00;ReadPosRankSum=1.710;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3611,378,0 chrXIV 679026 . T C 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=137;Dels=0.00;FS=7.381;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.191;QD=19.92;ReadPosRankSum=2.413;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:2,133:137:99:2762,285,0 chrXIV 679089 . G A 3215.99 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.5903;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.97;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3249,325,0 chrXIV 680930 . T C 6429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=256;Dels=0.00;FS=2.563;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.553;QD=25.11;ReadPosRankSum=2.965;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:3,251:256:99:6429,667,0 chrXIV 682206 . G C 4074.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.7677;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.02;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,171:177:99:4074,421,0 chrXIV 682580 . A T 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=136;Dels=0.00;FS=6.314;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.099;QD=25.47;ReadPosRankSum=2.395;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3464,340,0 chrXIV 682649 . T C 3045 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4654;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.07;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3078,318,0 chrXIV 686681 . T C 4922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=203;Dels=0.00;FS=3.186;HaplotypeScore=12.9349;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.703;QD=24.25;ReadPosRankSum=1.698;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4922,514,0 chrXIV 686786 . T C 4342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=175;Dels=0.00;FS=6.670;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.207;QD=24.81;ReadPosRankSum=2.379;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:4342,451,0 chrXIV 686858 . G A 4997.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.2748;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.74;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,198:202:99:4997,493,0 chrXIV 687492 . C G 4185.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=17.1412;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.78;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4185,421,0 chrXIV 688211 . A G 4966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.343;QD=24.34;ReadPosRankSum=1.698;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4966,496,0 chrXIV 688572 . C G 4478.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.3364;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.30;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4478,454,0 chrXIV 689029 . A G 3942.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.43;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3942,406,0 chrXIV 689057 . A G 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.147;QD=25.07;ReadPosRankSum=1.709;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3710,376,0 chrXIV 689310 . A G 2366 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.20;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2399,249,0 chrXIV 689558 . C A 4411.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=22.97;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4411,451,0 chrXIV 689569 . G A 4855.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=23.12;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4855,469,0 chrXIV 689582 . C G 4802.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.8336;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.44;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4802,484,0 chrXIV 689944 . C G 3640.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=24.11;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3640,370,0 chrXIV 689964 . A C 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.726;QD=23.78;ReadPosRankSum=2.354;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3662,370,0 chrXIV 689983 . A G 3026 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.25;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3059,318,0 chrXIV 690162 . T G 1275 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.90;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1308,135,0 chrXIV 690428 . C T 3578.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.70;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,146:151:99:3578,367,0 chrXIV 690993 . C T 4415.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=25.09;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4415,439,0 chrXIV 691115 . G A 3948.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.52;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3948,403,0 chrXIV 691294 . A G 70.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.845;DP=116;Dels=0.00;FS=5.382;HaplotypeScore=103.9268;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=1.763;QD=0.61;ReadPosRankSum=-5.235;SB=-8.151e+01 GT:AD:DP:GQ:PL 1/1:104,12:116:12:103,12,0 chrXIV 691577 . C T 2522 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=27.71;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2555,255,0 chrXIV 691878 . T C 4349.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4349,436,0 chrXIV 692612 . C T 4547.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.75;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4547,451,0 chrXIV 694273 . T C 795 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=2.135;QD=20.38;ReadPosRankSum=2.820;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,36:39:87:828,87,0 chrXIV 694765 . A G 2977 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.08;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3010,309,0 chrXIV 694868 . C T 2188 filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2221,225,0 chrXIV 695003 . A G 1230 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.78;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1263,129,0 chrXIV 695040 . A G 2754 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.4631;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.50;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2787,288,0 chrXIV 695118 . G A 2920 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=27.29;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2953,286,0 chrXIV 695952 . G A 4885.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.49;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4885,493,0 chrXIV 696647 . C T 4231.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.30;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:4231,415,0 chrXIV 696989 . C T 3593.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.8766;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.79;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3593,367,0 chrXIV 697058 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=140;Dels=0.00;FS=3.577;HaplotypeScore=14.4292;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.411;QD=24.37;ReadPosRankSum=-1.508;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3412,346,0 chrXIV 697554 . A T 1832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=120;Dels=0.03;FS=3.606;HaplotypeScore=32.0524;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-1.110;QD=15.27;ReadPosRankSum=1.703;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1865,195,0 chrXIV 697678 . A G 5010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=4.393;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.861;QD=26.79;ReadPosRankSum=1.714;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:5010,502,0 chrXIV 698189 . G A 5380.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=26.12;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5380,535,0 chrXIV 698660 . G A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.3336;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.28;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3399,334,0 chrXIV 698696 . C T 3557.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.6732;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.41;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3557,349,0 chrXIV 698753 . A G 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=14.3107;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.155;QD=21.70;ReadPosRankSum=1.655;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2941,306,0 chrXIV 699116 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.99;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4179,418,0 chrXIV 699152 . C T 4606.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.26;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4606,466,0 chrXIV 699228 . G A 5237.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.5654;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.05;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5237,544,0 chrXIV 699488 . C T 4474.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.9991;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.83;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4474,442,0 chrXIV 700166 . C T 4589.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.7087;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.78;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4589,478,0 chrXIV 701567 . T A 4341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=215;Dels=0.00;FS=4.293;HaplotypeScore=13.5978;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.055;QD=20.19;ReadPosRankSum=1.506;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4341,457,0 chrXIV 701618 . G T 3780.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=21.60;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3780,385,0 chrXIV 701961 . A C 8184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=357;Dels=0.00;FS=0.000;HaplotypeScore=19.9005;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.453;QD=22.92;ReadPosRankSum=1.190;SB=-4.064e+03 GT:AD:DP:GQ:PL 1/1:3,351:357:99:8184,841,0 chrXIV 702991 . A G 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.253;DP=161;Dels=0.00;FS=5.262;HaplotypeScore=12.8916;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.320;QD=23.20;ReadPosRankSum=3.350;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:4,157:161:99:3735,376,0 chrXIV 703330 . C T 4346.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.34;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4346,442,0 chrXIV 703407 . C A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.87;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3564,361,0 chrXIV 703536 . G A 3217.04 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.31;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3250,331,0 chrXIV 703603 . C T 3204 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=25.43;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3237,331,0 chrXIV 703883 . G A 6674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.441;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=10.9823;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-0.409;QD=21.39;ReadPosRankSum=1.082;SB=-2.953e+03 GT:AD:DP:GQ:PL 1/1:1,308:312:99:6674,640,0 chrXIV 703887 . T C 6288.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=9.2202;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=19.84;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:0,315:317:99:6288,652,0 chrXIV 703949 . G C 6627.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=24.5021;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=18.77;SB=-4.279e+03 GT:AD:DP:GQ:PL 1/1:0,350:353:99:6627,676,0 chrXIV 704094 . T C 8600.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=383;Dels=0.00;FS=10.591;HaplotypeScore=13.4422;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;MQRankSum=0.488;QD=22.45;ReadPosRankSum=2.971;SB=-4.645e+03 GT:AD:DP:GQ:PL 1/1:3,379:383:99:8600,880,0 chrXIV 704114 . C G 8310.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=13.4883;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=23.54;SB=-4.600e+03 GT:AD:DP:GQ:PL 1/1:0,345:353:99:8310,838,0 chrXIV 704248 . A G 5846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=12.1844;MLEAC=2;MLEAF=1.00;MQ=37.12;MQ0=0;MQRankSum=-1.486;QD=19.75;ReadPosRankSum=1.709;SB=-3.942e+03 GT:AD:DP:GQ:PL 1/1:1,295:296:99:5846,624,0 chrXIV 704280 . C T 2785 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.2371;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=0;QD=16.29;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:2818,303,0 chrXIV 704283 . T G 2238 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=0;QD=14.63;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2271,252,0 chrXIV 704289 . T C 1405 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=12.66;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1438,168,0 chrXIV 704296 . C T 965 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=13.59;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:998,102,0 chrXIV 704301 . C T 564 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=14.46;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:60:597,60,0 chrXIV 704303 . C T 539 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=13.82;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:60:572,60,0 chrXIV 704304 . T G 537 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=13.77;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:60:570,60,0 chrXIV 704310 . T C 335 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.85;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:42:368,42,0 chrXIV 704313 . C A 244 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.38;SB=-6.102e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:30:277,30,0 chrXIV 704316 . A T 63.97 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.26;SB=-5.991e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:96,9,0 chrXIV 704346 . G T 183.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.9889;MLEAC=1;MLEAF=0.500;MQ=28.56;MQ0=0;MQRankSum=1.470;QD=2.78;ReadPosRankSum=1.207;SB=-5.468e+02 GT:AD:DP:GQ:PL 0/1:1,65:66:0:212,0,0 chrXIV 704366 . C T 106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.211;DP=216;Dels=0.00;FS=0.830;HaplotypeScore=86.6882;MLEAC=1;MLEAF=0.500;MQ=35.43;MQ0=0;MQRankSum=-1.002;QD=0.49;ReadPosRankSum=-4.786;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:193,23:216:99:136,0,1304 chrXIV 704367 . G A 360.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.616;DP=226;Dels=0.00;FS=1.665;HaplotypeScore=86.9393;MLEAC=1;MLEAF=0.500;MQ=35.35;MQ0=0;MQRankSum=-3.900;QD=1.59;ReadPosRankSum=12.502;SB=-9.910e+02 GT:AD:DP:GQ:PL 0/1:126,99:226:99:390,0,1093 chrXIV 704373 . T C 71.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;DP=255;Dels=0.00;FS=0.665;HaplotypeScore=102.4312;MLEAC=1;MLEAF=0.500;MQ=34.99;MQ0=0;MQRankSum=-1.616;QD=0.28;ReadPosRankSum=-5.994;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:218,37:255:99:101,0,1712 chrXIV 704379 . T C 325.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.470;DP=284;Dels=0.00;FS=1.503;HaplotypeScore=144.7560;MLEAC=1;MLEAF=0.500;MQ=34.54;MQ0=0;MQRankSum=-2.237;QD=1.14;ReadPosRankSum=13.557;SB=-8.750e+02 GT:AD:DP:GQ:PL 0/1:184,99:284:99:355,0,1709 chrXIV 704380 . C T 129.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.652;DP=294;Dels=0.00;FS=5.512;HaplotypeScore=144.7560;MLEAC=1;MLEAF=0.500;MQ=34.37;MQ0=0;MQRankSum=-0.715;QD=0.44;ReadPosRankSum=-6.065;SB=-2.960e+02 GT:AD:DP:GQ:PL 0/1:242,52:294:99:159,0,2018 chrXIV 704388 . G T 304.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;DP=410;Dels=0.00;FS=12.713;HaplotypeScore=330.4604;MLEAC=1;MLEAF=0.500;MQ=32.98;MQ0=0;MQRankSum=-1.874;QD=0.74;ReadPosRankSum=-8.143;SB=-5.880e+02 GT:AD:DP:GQ:PL 0/1:271,93:410:99:334,0,2155 chrXIV 704394 . C T 675.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.286;DP=466;Dels=0.00;FS=16.612;HaplotypeScore=49.4639;MLEAC=1;MLEAF=0.500;MQ=32.49;MQ0=0;MQRankSum=-1.569;QD=1.45;ReadPosRankSum=-10.599;SB=-1.428e+03 GT:AD:DP:GQ:PL 0/1:288,178:466:99:705,0,2351 chrXIV 704400 . T C 976.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579;DP=504;Dels=0.00;FS=11.719;HaplotypeScore=193.9231;MLEAC=1;MLEAF=0.500;MQ=32.19;MQ0=0;MQRankSum=-2.609;QD=1.94;ReadPosRankSum=-7.849;SB=-1.973e+03 GT:AD:DP:GQ:PL 0/1:308,196:504:99:1006,0,2580 chrXIV 704401 . T C 924.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.755;DP=507;Dels=0.00;FS=10.006;HaplotypeScore=196.2892;MLEAC=1;MLEAF=0.500;MQ=32.17;MQ0=0;MQRankSum=-1.683;QD=1.82;ReadPosRankSum=-6.516;SB=-1.950e+03 GT:AD:DP:GQ:PL 0/1:310,196:507:99:954,0,2686 chrXIV 704408 . T C 1937.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.547;DP=583;Dels=0.00;FS=2.621;HaplotypeScore=475.1701;MLEAC=1;MLEAF=0.500;MQ=31.49;MQ0=0;MQRankSum=-3.874;QD=3.32;ReadPosRankSum=-6.707;SB=-4.233e+03 GT:AD:DP:GQ:PL 0/1:213,370:583:99:1967,0,1934 chrXIV 704409 . G T 76.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.108;DP=588;Dels=0.00;FS=2.407;HaplotypeScore=475.1701;MLEAC=1;MLEAF=0.500;MQ=31.47;MQ0=0;MQRankSum=-1.862;QD=0.13;ReadPosRankSum=-1.517;SB=-4.230e+02 GT:AD:DP:GQ:PL 0/1:492,95:588:99:106,0,3683 chrXIV 704417 . C T 1103.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.846;DP=624;Dels=0.00;FS=10.436;HaplotypeScore=664.1287;MLEAC=1;MLEAF=0.500;MQ=31.33;MQ0=0;MQRankSum=-1.802;QD=1.77;ReadPosRankSum=0.309;SB=-1.845e+03 GT:AD:DP:GQ:PL 0/1:414,210:624:99:1133,0,3047 chrXIV 704439 . A C 156.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;DP=563;Dels=0.00;FS=1.242;HaplotypeScore=229.5400;MLEAC=1;MLEAF=0.500;MQ=31.58;MQ0=0;MQRankSum=-0.555;QD=0.28;ReadPosRankSum=6.030;SB=-7.410e+02 GT:AD:DP:GQ:PL 0/1:453,110:563:99:186,0,4148 chrXIV 704443 . C A 73.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.776;DP=546;Dels=0.00;FS=1.250;HaplotypeScore=228.0241;MLEAC=1;MLEAF=0.500;MQ=31.41;MQ0=0;MQRankSum=-4.466;QD=0.13;ReadPosRankSum=5.776;SB=-7.370e+02 GT:AD:DP:GQ:PL 0/1:435,111:546:99:103,0,4213 chrXIV 704444 . A C,T 4717.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.707;DP=545;Dels=0.00;FS=3.022;HaplotypeScore=9.5010;MLEAC=1,1;MLEAF=0.500,0.500;MQ=31.42;MQ0=0;MQRankSum=-1.618;QD=8.66;ReadPosRankSum=1.726;SB=-6.696e+03 GT:AD:DP:GQ:PL 1/2:1,162,382:545:99:4717,2709,2475,2008,0,1687 chrXIV 704451 . T G 1393.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.559;DP=529;Dels=0.00;FS=1.567;HaplotypeScore=540.4363;MLEAC=1;MLEAF=0.500;MQ=30.91;MQ0=0;MQRankSum=-0.719;QD=2.63;ReadPosRankSum=-8.042;SB=-1.002e+03 GT:AD:DP:GQ:PL 0/1:382,146:529:99:1423,0,2440 chrXIV 704457 . T C 336.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.071;DP=455;Dels=0.00;FS=1.422;HaplotypeScore=338.0769;MLEAC=1;MLEAF=0.500;MQ=29.42;MQ0=0;MQRankSum=0.596;QD=0.74;ReadPosRankSum=-4.618;SB=-5.150e+02 GT:AD:DP:GQ:PL 0/1:368,87:455:99:366,0,2322 chrXIV 704459 . C T 992.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.427;DP=449;Dels=0.00;FS=2.469;HaplotypeScore=334.1305;MLEAC=1;MLEAF=0.500;MQ=28.89;MQ0=0;MQRankSum=-1.456;QD=2.21;ReadPosRankSum=-3.981;SB=-2.121e+03 GT:AD:DP:GQ:PL 0/1:260,189:449:99:1022,0,1804 chrXIV 704460 . C A 231.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;DP=440;Dels=0.00;FS=2.647;HaplotypeScore=321.2461;MLEAC=1;MLEAF=0.500;MQ=28.91;MQ0=0;MQRankSum=0.109;QD=0.53;ReadPosRankSum=-5.313;SB=-4.410e+02 GT:AD:DP:GQ:PL 0/1:357,83:440:99:261,0,2521 chrXIV 704463 . A T 374.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;DP=450;Dels=0.00;FS=1.357;HaplotypeScore=333.9724;MLEAC=1;MLEAF=0.500;MQ=28.92;MQ0=0;MQRankSum=1.002;QD=0.83;ReadPosRankSum=-7.094;SB=-5.380e+02 GT:AD:DP:GQ:PL 0/1:353,97:450:99:404,0,2484 chrXIV 704472 . G A,T 3042.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=380;Dels=0.00;FS=0.000;HaplotypeScore=59.9235;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.67;MQ0=0;QD=8.01;SB=-4.473e+03 GT:AD:DP:GQ:PL 1/2:0,288,92:380:99:3102,674,401,2428,0,2347 chrXIV 704484 . T C 1405.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;DP=273;Dels=0.00;FS=6.697;HaplotypeScore=172.2604;MLEAC=1;MLEAF=0.500;MQ=28.96;MQ0=0;MQRankSum=-0.227;QD=5.15;ReadPosRankSum=4.746;SB=-1.932e+03 GT:AD:DP:GQ:PL 0/1:104,169:273:99:1435,0,339 chrXIV 704490 . C T 2440 SnpCluster AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=224.1783;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=0;QD=9.84;SB=-3.395e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:2473,255,0 chrXIV 704493 . T G 920.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;DP=247;Dels=0.00;FS=6.979;HaplotypeScore=132.5147;MLEAC=1;MLEAF=0.500;MQ=31.15;MQ0=0;MQRankSum=-1.062;QD=3.72;ReadPosRankSum=3.956;SB=-1.096e+03 GT:AD:DP:GQ:PL 0/1:135,112:247:99:950,0,777 chrXIV 704499 . T C 686.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;DP=239;Dels=0.00;FS=2.962;HaplotypeScore=45.4714;MLEAC=1;MLEAF=0.500;MQ=34.39;MQ0=0;MQRankSum=-1.474;QD=2.87;ReadPosRankSum=1.378;SB=-9.050e+02 GT:AD:DP:GQ:PL 0/1:149,90:239:99:716,0,1108 chrXIV 704501 . C T 1183.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.818;DP=245;Dels=0.00;FS=1.553;HaplotypeScore=47.0922;MLEAC=1;MLEAF=0.500;MQ=34.60;MQ0=0;MQRankSum=1.674;QD=4.83;ReadPosRankSum=3.054;SB=-1.344e+03 GT:AD:DP:GQ:PL 0/1:107,137:245:99:1213,0,840 chrXIV 704502 . C A 635.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;DP=227;Dels=0.00;FS=1.070;HaplotypeScore=28.3880;MLEAC=1;MLEAF=0.500;MQ=35.17;MQ0=0;MQRankSum=-2.932;QD=2.80;ReadPosRankSum=-1.832;SB=-8.140e+02 GT:AD:DP:GQ:PL 0/1:140,81:227:99:665,0,1314 chrXIV 704505 . A T 468.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;DP=223;Dels=0.00;FS=1.105;HaplotypeScore=13.2996;MLEAC=1;MLEAF=0.500;MQ=36.48;MQ0=0;MQRankSum=-2.287;QD=2.10;ReadPosRankSum=-3.423;SB=-6.430e+02 GT:AD:DP:GQ:PL 0/1:152,71:223:99:498,0,1755 chrXIV 704514 . A T 160.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;DP=235;Dels=0.00;FS=1.280;HaplotypeScore=40.6568;MLEAC=1;MLEAF=0.500;MQ=40.29;MQ0=0;MQRankSum=-2.453;QD=0.68;ReadPosRankSum=-6.884;SB=-2.090e+02 GT:AD:DP:GQ:PL 0/1:188,47:235:99:190,0,2422 chrXIV 705005 . C A 7941.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=28.3934;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.36;SB=-4.271e+03 GT:AD:DP:GQ:PL 1/1:0,323:326:99:7941,793,0 chrXIV 705188 . G A 8182.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=20.4478;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.72;SB=-4.471e+03 GT:AD:DP:GQ:PL 1/1:0,329:331:99:8182,806,0 chrXIV 705287 . T C 7682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=341;Dels=0.00;FS=9.264;HaplotypeScore=18.1852;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=1.956;QD=22.53;ReadPosRankSum=2.902;SB=-4.657e+03 GT:AD:DP:GQ:PL 1/1:3,336:341:99:7682,793,0 chrXIV 705401 . T C 6000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=276;Dels=0.00;FS=3.901;HaplotypeScore=16.1915;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.208;QD=21.74;ReadPosRankSum=1.707;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:1,275:276:99:6000,610,0 chrXIV 705531 . A G 5577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-1.272;QD=22.95;ReadPosRankSum=1.689;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:1,240:243:99:5577,577,0 chrXIV 705555 . T G 5059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=251;Dels=0.00;FS=3.686;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-1.400;QD=20.16;ReadPosRankSum=1.704;SB=-2.858e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5059,517,0 chrXIV 705570 . C A 5240.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.30;SB=-3.358e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5240,529,0 chrXIV 705671 . T C 4636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=213;Dels=0.00;FS=3.441;HaplotypeScore=8.9595;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.899;QD=21.77;ReadPosRankSum=1.683;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:4636,475,0 chrXIV 705870 . C T 2522 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.02;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2555,264,0 chrXIV 706528 . T G 5605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=270;Dels=0.00;FS=5.540;HaplotypeScore=19.8602;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.340;QD=20.76;ReadPosRankSum=1.719;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:1,266:270:99:5605,583,0 chrXIV 706575 . A T 5710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=253;Dels=0.00;FS=2.714;HaplotypeScore=14.3822;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.334;QD=22.57;ReadPosRankSum=2.362;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:2,251:253:99:5710,571,0 chrXIV 707137 . C T 4255.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4255,436,0 chrXIV 707187 . G A 4475.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=17.5867;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.64;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4475,439,0 chrXIV 707509 . G A 3956.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.3500;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.13;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3956,403,0 chrXIV 707765 . A G 6893.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=14.8168;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.01;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,262:265:99:6893,712,0 chrXIV 708050 . A T 9786.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=433;Dels=0.00;FS=2.962;HaplotypeScore=25.9737;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.484;QD=22.60;ReadPosRankSum=2.415;SB=-5.496e+03 GT:AD:DP:GQ:PL 1/1:2,430:433:99:9786,974,0 chrXIV 708215 . T C 7229.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=20.5327;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.17;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,308:312:99:7229,748,0 chrXIV 708614 . A G 5397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=256;Dels=0.00;FS=2.935;HaplotypeScore=10.9467;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.654;QD=21.08;ReadPosRankSum=2.411;SB=-3.083e+03 GT:AD:DP:GQ:PL 1/1:2,252:255:99:5397,547,0 chrXIV 708870 . C T 6366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=14.8979;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.392;QD=26.09;ReadPosRankSum=0.221;SB=-3.304e+03 GT:AD:DP:GQ:PL 1/1:1,242:244:99:6366,622,0 chrXIV 709208 . C A 6691.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=18.8634;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.81;SB=-3.696e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:6691,685,0 chrXIV 709317 . C T 5751.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=19.6461;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.38;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:5751,580,0 chrXIV 709506 . A G 5257.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=16.1894;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.77;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:5257,529,0 chrXIV 709675 . G A 4645.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.82;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4645,478,0 chrXIV 709906 . T C 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=134;Dels=0.00;FS=6.809;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.989;QD=23.25;ReadPosRankSum=2.413;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3148,310,0 chrXIV 710340 . A G 3731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=145;Dels=0.00;FS=3.015;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.348;QD=25.73;ReadPosRankSum=2.280;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3731,382,0 chrXIV 710457 . G A 4238.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.08;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4238,418,0 chrXIV 711992 . A G 6960.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=14.1211;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,314:314:99:6960,721,0 chrXIV 713348 . A T 4799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=198;Dels=0.00;FS=2.874;HaplotypeScore=13.4399;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.172;QD=24.24;ReadPosRankSum=2.425;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4799,487,0 chrXIV 716316 . C T 1843 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.43;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1876,189,0 chrXIV 716325 . G A 1766 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=23.24;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1799,183,0 chrXIV 716564 . G A 295 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=14.05;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:33:328,33,0 chrXIV 717120 . T G 3293.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.95;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3293,333,0 chrXIV 717421 . C T 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=152;Dels=0.00;FS=3.689;HaplotypeScore=11.5020;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.593;QD=21.86;ReadPosRankSum=-0.296;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3323,345,0 chrXIV 717528 . T A 4961.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.8446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4961,493,0 chrXIV 717904 . A G 3865.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.43;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3865,388,0 chrXIV 718496 . A G 2269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=13.2467;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.440;QD=23.64;ReadPosRankSum=1.696;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2302,237,0 chrXIV 718667 . C T 2109 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=25.41;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2142,213,0 chrXIV 719403 . G A 5320.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.8643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.60;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5320,535,0 chrXIV 720706 . A C 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=112;Dels=0.00;FS=5.984;HaplotypeScore=8.9711;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.523;QD=23.64;ReadPosRankSum=2.936;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:3,107:112:99:2681,276,0 chrXIV 722746 . C T 4581.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.76;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4581,463,0 chrXIV 723138 . G A 2181 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2214,219,0 chrXIV 725113 . T A 3858.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.22;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3858,388,0 chrXIV 726075 . G T 2260 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=21.94;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2293,240,0 chrXIV 726118 . A G 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;MQRankSum=-0.509;QD=23.60;ReadPosRankSum=1.528;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2464,252,0 chrXIV 726269 . T A 1073 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=18.50;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1106,114,0 chrXIV 726271 . T A 1045 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.82;MQ0=0;QD=18.66;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1078,111,0 chrXIV 726272 . T C 999 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.37;MQ0=0;QD=18.50;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1032,111,0 chrXIV 726274 . A T 1077 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.37;MQ0=0;QD=19.94;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1110,111,0 chrXIV 726275 . G C 1018 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.28;MQ0=1;QD=18.85;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1051,111,0 chrXIV 726336 . C T 1240 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=17;QD=15.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:17,63:80:99:1273,132,0 chrXIV 726345 . T G 1379 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.683;DP=88;Dels=0.00;FS=15.502;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=17;MQRankSum=1.586;QD=15.67;ReadPosRankSum=1.439;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:16,72:88:99:1412,144,0 chrXIV 726350 . C T 1539 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.442;DP=95;Dels=0.00;FS=22.300;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.53;MQ0=17;MQRankSum=2.494;QD=16.20;ReadPosRankSum=2.442;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:20,75:95:99:1572,150,0 chrXIV 726410 . G A 802 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.481;DP=61;Dels=0.00;FS=22.143;HaplotypeScore=1.9667;MLEAC=2;MLEAF=1.00;MQ=23.89;MQ0=4;MQRankSum=5.777;QD=13.15;ReadPosRankSum=-1.039;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:22,39:61:84:835,84,0 chrXIV 726427 . C T 480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.939;DP=50;Dels=0.00;FS=6.873;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=23.17;MQ0=0;MQRankSum=4.797;QD=9.60;ReadPosRankSum=-1.799;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:19,31:50:54:513,54,0 chrXIV 726489 . T C 58.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.324;DP=33;Dels=0.00;FS=21.553;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=10.21;MQ0=18;MQRankSum=0.209;QD=1.77;ReadPosRankSum=3.366;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:19,14:33:12:91,12,0 chrXIV 726490 . G C 58.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.412;DP=33;Dels=0.00;FS=26.994;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=10.21;MQ0=18;MQRankSum=1.002;QD=1.77;ReadPosRankSum=2.298;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:19,14:33:12:91,12,0 chrXIV 726518 . C G 87.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.76;MQ0=18;QD=3.23;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:13,14:27:15:120,15,0 chrXIV 726523 . T C 87.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.76;MQ0=18;QD=3.23;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:13,14:27:15:120,15,0 chrXIV 726525 . T G 87.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.87;MQ0=18;QD=3.12;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:13,15:28:15:120,15,0 chrXIV 726575 . C T 237.01 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.27;MQ0=0;QD=21.55;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:27:270,27,0 chrXIV 727465 . C G 779 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.55;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,37:42:84:812,84,0 chrXIV 728933 . G C 4617.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.7909;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.41;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4617,490,0 chrXIV 729083 . T G 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=196;Dels=0.00;FS=8.291;HaplotypeScore=11.7988;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.475;QD=22.95;ReadPosRankSum=2.323;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:2,192:196:99:4498,463,0 chrXIV 729195 . G C 4997.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.74;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4997,520,0 chrXIV 730475 . G A 2018 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.61;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2051,204,0 chrXIV 730569 . A G 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=86.2252;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;MQRankSum=-1.661;QD=20.48;ReadPosRankSum=1.697;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2040,213,0 chrXIV 730604 . C A 1988 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;QD=19.49;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2021,204,0 chrXIV 730652 . G T 2175 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=23.14;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2208,219,0 chrXIV 730789 . A G 1284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-0.294;QD=24.23;ReadPosRankSum=1.667;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1317,135,0 chrXIV 730973 . A G 930 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.68;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:963,99,0 chrXIV 731054 . C T 1032 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=25.80;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1065,105,0 chrXIV 731081 . C T 1295 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=26.43;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1328,132,0 chrXIV 731231 . A G 3575.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=27.50;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3575,363,0 chrXIV 731281 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.1009;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=27.26;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3680,367,0 chrXIV 731346 . C T 3117 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.4831;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.26;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3150,319,0 chrXIV 731372 . A G 3309.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.64;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3309,334,0 chrXIV 731634 . A C 4634.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=25.74;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4634,478,0 chrXIV 731735 . T C 4514.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.0969;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.40;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4514,478,0 chrXIV 731856 . T C 4571.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.44;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4571,463,0 chrXIV 732035 . C A 4239.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.17;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4239,424,0 chrXIV 732176 . A G 4391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=183;Dels=0.00;FS=9.396;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.525;QD=23.99;ReadPosRankSum=2.873;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:3,179:183:99:4391,451,0 chrXIV 732854 . G A 3581.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.6719;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=19.05;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:3581,370,0 chrXIV 732856 . A C 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.090;DP=191;Dels=0.00;FS=2.990;HaplotypeScore=6.0380;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=-0.456;QD=18.83;ReadPosRankSum=2.000;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3597,373,0 chrXIV 733411 . T G 6920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=17.4992;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.263;QD=25.16;ReadPosRankSum=2.405;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:2,271:275:99:6920,727,0 chrXIV 733487 . G C 5161.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.0102;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.57;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5161,538,0 chrXIV 733695 . A G 4612.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.50;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4612,481,0 chrXIV 735177 . G A 8845.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=27.1751;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.79;SB=-5.034e+03 GT:AD:DP:GQ:PL 1/1:0,340:343:99:8845,860,0 chrXIV 735429 . C T 4629.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=26.0152;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.49;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,183:189:99:4629,463,0 chrXIV 736713 . A G 4833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=192;Dels=0.00;FS=6.090;HaplotypeScore=12.8260;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.000;QD=25.17;ReadPosRankSum=2.963;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:3,187:192:99:4833,487,0 chrXIV 737420 . A T 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.5240;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.414;QD=24.72;ReadPosRankSum=1.690;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4030,397,0 chrXIV 741004 . A G 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=153;Dels=0.00;FS=8.358;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=0.562;QD=23.68;ReadPosRankSum=2.352;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:3623,376,0 chrXIV 744856 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.8378;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.009;QD=23.09;ReadPosRankSum=1.690;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3786,385,0 chrXIV 745342 . A G 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=155;Dels=0.00;FS=3.038;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.997;QD=23.25;ReadPosRankSum=2.418;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3603,373,0 chrXIV 745595 . T C 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=105;Dels=0.00;FS=3.501;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.420;QD=22.62;ReadPosRankSum=1.698;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2408,255,0 chrXIV 746254 . T G 2473 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=22.69;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2506,258,0 chrXIV 746278 . T G 2003 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=101;Dels=0.00;FS=3.784;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=-1.379;QD=19.83;ReadPosRankSum=1.697;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,97:101:99:2036,204,0 chrXIV 746282 . T A 1651 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=17.38;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1684,174,0 chrXIV 746283 . T G 1675 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=3.802;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=-0.180;QD=17.45;ReadPosRankSum=1.696;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1708,174,0 chrXIV 746543 . A G 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.263;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=1.405;QD=24.93;ReadPosRankSum=1.667;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2700,276,0 chrXIV 746927 . G T 2795 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.73;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2828,286,0 chrXIV 750904 . A G 1645 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=10;MQRankSum=-1.692;QD=17.14;ReadPosRankSum=1.692;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1678,171,0 chrXIV 750905 . A G 1654 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=10;MQRankSum=-1.732;QD=17.41;ReadPosRankSum=1.691;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1687,171,0 chrXIV 751220 . A G 2916 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=13.7477;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=23.14;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2949,306,0 chrXIV 751529 . A G 2003 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=142;Dels=0.00;FS=9.279;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=23.90;MQ0=12;MQRankSum=-0.823;QD=14.11;ReadPosRankSum=2.374;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2036,213,0 chrXIV 751540 . C T 1711 filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.9667;MLEAC=2;MLEAF=1.00;MQ=22.48;MQ0=12;QD=12.49;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:1744,183,0 chrXIV 751553 . C T 1573 filter AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=23.61;MQ0=14;QD=11.00;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:1606,174,0 chrXIV 751721 . G A 3445.01 filter AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=20;QD=17.94;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3445,384,0 chrXIV 751794 . A G 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.172;DP=222;Dels=0.00;FS=15.088;HaplotypeScore=11.5571;MLEAC=2;MLEAF=1.00;MQ=42.15;MQ0=0;MQRankSum=2.117;QD=18.73;ReadPosRankSum=4.153;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:6,216:222:99:4157,438,0 chrXIV 751807 . G A 4023.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=19.25;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4023,406,0 chrXIV 751913 . T G 3230.05 filter AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=26.78;MQ0=9;QD=18.25;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3264,345,0 chrXIV 751925 . C G 3184 filter AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=29.81;MQ0=8;QD=17.89;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:3217,342,0 chrXIV 752030 . A G 6109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=256;Dels=0.00;FS=6.317;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=1;MQRankSum=-0.865;QD=23.86;ReadPosRankSum=2.430;SB=-3.088e+03 GT:AD:DP:GQ:PL 1/1:2,253:256:99:6109,637,0 chrXIV 752069 . A G 5240.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.7434;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=1;QD=22.98;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5240,544,0 chrXIV 752169 . C T 4118.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=26.40;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4118,406,0 chrXIV 752223 . C T 5186.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=24.23;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5186,514,0 chrXIV 752316 . C T 2695 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.06;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2728,268,0 chrXIV 752936 . A T 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=145;Dels=0.00;FS=3.353;HaplotypeScore=13.1998;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.179;QD=22.11;ReadPosRankSum=1.708;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3239,333,0 chrXIV 752968 . C T 3698.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.71;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3698,376,0 chrXIV 754223 . C T 3419.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.9214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3419,349,0 chrXIV 754294 . T C 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=145;Dels=0.00;FS=2.681;HaplotypeScore=12.0427;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.469;QD=23.84;ReadPosRankSum=2.415;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3457,360,0 chrXIV 755402 . T C 1119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=2;MQRankSum=-0.019;QD=12.30;ReadPosRankSum=1.693;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1152,117,0 chrXIV 755412 . G C 1098 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=66.0345;MLEAC=2;MLEAF=1.00;MQ=31.55;MQ0=2;QD=11.81;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1131,114,0 chrXIV 755437 . C T 1131 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.51;MQ0=2;QD=9.75;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1164,114,0 chrXIV 755451 . T C 1430 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;QD=12.88;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1463,144,0 chrXIV 755457 . A T 1387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.307;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;MQRankSum=-0.881;QD=12.17;ReadPosRankSum=1.246;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1420,116,0 chrXIV 757948 . G A 6225.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=15.9371;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-3.118e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:6225,643,0 chrXIV 758123 . C T 6557.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.5359;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.10;SB=-3.040e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:6557,652,0 chrXIV 758326 . G A 5226.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.2633;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.08;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5226,538,0 chrXIV 758808 . A G 4773.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4773,484,0 chrXIV 761395 . A C 4507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.131;QD=26.83;ReadPosRankSum=1.670;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:4507,457,0 chrXIV 764877 . G T 2750 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.44;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2783,276,0 chrXIV 765269 . A G 5013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=3.407;HaplotypeScore=15.0676;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.168;QD=24.22;ReadPosRankSum=1.698;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:5013,511,0 chrXIV 765330 . T G 4599.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.23;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4599,472,0 chrXIV 765771 . A T 4604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=223;Dels=0.00;FS=2.998;HaplotypeScore=213.4424;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.391;QD=20.65;ReadPosRankSum=2.417;SB=-2.992e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:4604,495,0 chrXIV 765775 . C A 4880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.898;QD=21.98;ReadPosRankSum=1.055;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:1,219:222:99:4880,502,0 chrXIV 765828 . A G 4243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=192;Dels=0.00;FS=3.033;HaplotypeScore=16.8913;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-0.601;QD=22.10;ReadPosRankSum=2.423;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:2,184:192:99:4243,439,0 chrXIV 766428 . T C 4527.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4527,451,0 chrXIV 768862 . C T 4458.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.46;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4458,457,0 chrXIV 769532 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8467;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.77;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3245,316,0 chrXIV 769815 . G A 2449 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2482,246,0 chrXIV 770360 . T C 2068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.507;QD=20.68;ReadPosRankSum=1.697;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2101,213,0 chrXIV 770366 . T C 2134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.767;DP=108;Dels=0.00;FS=5.703;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-1.103;QD=19.76;ReadPosRankSum=2.898;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2167,216,0 chrXIV 770491 . C T 5064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.445;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.6927;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.518;QD=23.89;ReadPosRankSum=-0.099;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:5064,493,0 chrXIV 772254 . G C 2488 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.88;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2521,249,0 chrXIV 772854 . C T 346.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;DP=249;Dels=0.00;FS=54.514;HaplotypeScore=20.6389;MLEAC=1;MLEAF=0.500;MQ=49.71;MQ0=38;MQRankSum=-9.528;QD=1.39;ReadPosRankSum=-5.372;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:167,81:249:99:376,0,3618 chrXIV 772971 . C T 2762.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.800;DP=425;Dels=0.00;FS=41.540;HaplotypeScore=30.8828;MLEAC=1;MLEAF=0.500;MQ=41.62;MQ0=8;MQRankSum=-2.711;QD=6.50;ReadPosRankSum=-0.990;SB=-3.780e+02 GT:AD:DP:GQ:PL 0/1:258,165:425:99:2792,0,5104 chrXIV 773196 . G A 2291.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.888;DP=438;Dels=0.00;FS=0.000;HaplotypeScore=24.8084;MLEAC=1;MLEAF=0.500;MQ=49.33;MQ0=5;MQRankSum=-9.314;QD=5.23;ReadPosRankSum=-1.570;SB=-9.090e+02 GT:AD:DP:GQ:PL 0/1:248,190:438:99:2321,0,4724 chrXIV 773226 . T C 2656.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;DP=438;Dels=0.00;FS=2.144;HaplotypeScore=27.8758;MLEAC=1;MLEAF=0.500;MQ=51.01;MQ0=5;MQRankSum=-9.805;QD=6.06;ReadPosRankSum=1.860;SB=-1.211e+03 GT:AD:DP:GQ:PL 0/1:243,190:438:99:2686,0,4190 chrXIV 773244 . A T 2775.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.884;DP=419;Dels=0.00;FS=0.767;HaplotypeScore=18.2466;MLEAC=1;MLEAF=0.500;MQ=51.88;MQ0=4;MQRankSum=-11.248;QD=6.62;ReadPosRankSum=2.072;SB=-1.127e+03 GT:AD:DP:GQ:PL 0/1:233,185:419:99:2805,0,4225 chrXIV 773265 . T G 2364.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;DP=429;Dels=0.00;FS=6.593;HaplotypeScore=28.7570;MLEAC=1;MLEAF=0.500;MQ=51.41;MQ0=10;MQRankSum=-12.226;QD=5.51;ReadPosRankSum=0.816;SB=-8.250e+02 GT:AD:DP:GQ:PL 0/1:235,191:429:99:2394,0,4474 chrXIV 773371 . A G 123.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.222;DP=300;Dels=0.00;FS=88.889;HaplotypeScore=10.2529;MLEAC=1;MLEAF=0.500;MQ=49.97;MQ0=25;MQRankSum=-12.598;QD=0.41;ReadPosRankSum=-1.343;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:201,98:300:99:153,0,4550 chrXIV 773382 . C T 592.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;DP=291;Dels=0.00;FS=17.587;HaplotypeScore=21.8051;MLEAC=1;MLEAF=0.500;MQ=49.92;MQ0=20;MQRankSum=-11.762;QD=2.03;ReadPosRankSum=-3.235;SB=-1.190e+02 GT:AD:DP:GQ:PL 0/1:183,108:291:99:622,0,3884 chrXIV 773805 . T G 183.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.615;DP=281;Dels=0.00;FS=143.771;HaplotypeScore=15.8605;MLEAC=1;MLEAF=0.500;MQ=52.73;MQ0=15;MQRankSum=-10.258;QD=0.65;ReadPosRankSum=1.654;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:220,61:281:99:213,0,4985 chrXIV 773862 . G A 441.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.132;DP=301;Dels=0.00;FS=55.564;HaplotypeScore=14.0757;MLEAC=1;MLEAF=0.500;MQ=54.16;MQ0=7;MQRankSum=-10.404;QD=1.47;ReadPosRankSum=3.338;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:242,59:301:99:471,0,4843 chrXIV 774280 . C T 1666 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=16;QD=18.11;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1699,165,0 chrXIV 774285 . C G 1098.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;DP=90;Dels=0.00;FS=22.964;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.77;MQ0=14;MQRankSum=-0.441;QD=12.20;ReadPosRankSum=1.120;SB=-2.804e+00 GT:AD:DP:GQ:PL 0/1:14,75:90:76:1128,0,76 chrXIV 774330 . G A 912.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.499;DP=97;Dels=0.00;FS=19.058;HaplotypeScore=7.2771;MLEAC=1;MLEAF=0.500;MQ=29.47;MQ0=4;MQRankSum=0.077;QD=9.40;ReadPosRankSum=-2.364;SB=-1.400e+02 GT:AD:DP:GQ:PL 0/1:28,67:97:99:942,0,259 chrXIV 774336 . A T 815.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.607;DP=103;Dels=0.00;FS=26.474;HaplotypeScore=4.0303;MLEAC=1;MLEAF=0.500;MQ=29.89;MQ0=4;MQRankSum=-0.366;QD=7.91;ReadPosRankSum=-0.275;SB=-1.830e+02 GT:AD:DP:GQ:PL 0/1:35,68:103:99:845,0,292 chrXIV 774340 . G A 898.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;DP=105;Dels=0.00;FS=28.286;HaplotypeScore=5.6077;MLEAC=1;MLEAF=0.500;MQ=29.88;MQ0=4;MQRankSum=-0.578;QD=8.55;ReadPosRankSum=0.387;SB=-2.370e+02 GT:AD:DP:GQ:PL 0/1:35,70:105:99:928,0,280 chrXIV 774355 . T C 856.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;DP=113;Dels=0.00;FS=34.952;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=29.12;MQ0=3;MQRankSum=0.453;QD=7.58;ReadPosRankSum=1.003;SB=-4.020e+02 GT:AD:DP:GQ:PL 0/1:33,80:113:99:886,0,239 chrXIV 774356 . A T 823.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;DP=113;Dels=0.00;FS=34.952;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=29.12;MQ0=3;MQRankSum=0.440;QD=7.28;ReadPosRankSum=1.144;SB=-4.090e+02 GT:AD:DP:GQ:PL 0/1:33,80:113:99:853,0,222 chrXIV 774359 . G A 889.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;DP=127;Dels=0.00;FS=29.895;HaplotypeScore=4.7208;MLEAC=1;MLEAF=0.500;MQ=28.52;MQ0=3;MQRankSum=0.413;QD=7.00;ReadPosRankSum=-0.112;SB=-5.000e+02 GT:AD:DP:GQ:PL 0/1:32,95:127:99:919,0,165 chrXIV 774367 . G T 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.514;DP=124;Dels=0.00;FS=26.158;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=28.12;MQ0=3;MQRankSum=-0.207;QD=0.78;ReadPosRankSum=0.627;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,26:124:99:127,0,787 chrXIV 774368 . C T 1131 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=2;QD=9.58;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1164,114,0 chrXIV 774379 . A T 857.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.600;DP=130;Dels=0.00;FS=27.756;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.23;MQ0=6;MQRankSum=1.383;QD=6.59;ReadPosRankSum=0.442;SB=-8.260e+02 GT:AD:DP:GQ:PL 0/1:31,99:130:99:887,0,103 chrXIV 774384 . A G 837.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.393;DP=131;Dels=0.00;FS=35.970;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.00;MQ0=9;MQRankSum=0.283;QD=6.39;ReadPosRankSum=-0.296;SB=-9.040e+02 GT:AD:DP:GQ:PL 0/1:31,100:131:99:867,0,118 chrXIV 774399 . T G 1073 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.59;MQ0=15;QD=7.35;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1106,114,0 chrXIV 774418 . A G 632.21 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.157;DP=149;Dels=0.00;FS=26.314;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.03;MQ0=22;MQRankSum=3.678;QD=4.24;ReadPosRankSum=1.274;SB=-4.612e+02 GT:AD:DP:GQ:PL 1/1:45,104:149:16:665,16,0 chrXIV 774421 . C T 842 filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.91;MQ0=22;QD=5.69;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:87:875,87,0 chrXIV 774447 . T A 774 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.181;DP=131;Dels=0.00;FS=5.316;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=22.54;MQ0=26;MQRankSum=6.058;QD=5.91;ReadPosRankSum=0.013;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:44,87:131:84:807,84,0 chrXIV 774450 . T C 763 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.7313;MLEAC=2;MLEAF=1.00;MQ=22.54;MQ0=27;MQRankSum=0.223;QD=5.96;ReadPosRankSum=1.698;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:2,126:128:81:796,81,0 chrXIV 774466 . A G 615 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.890;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.84;MQ0=29;MQRankSum=5.854;QD=5.21;ReadPosRankSum=0.648;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:43,75:118:69:648,69,0 chrXIV 774472 . T C 611 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.278;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.96;MQ0=29;MQRankSum=5.522;QD=5.36;ReadPosRankSum=0.738;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:41,73:114:66:644,66,0 chrXIV 774476 . G C 611 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=22.09;MQ0=26;QD=5.82;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,105:105:66:644,66,0 chrXIV 774484 . T C 446 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=22.15;MQ0=21;QD=5.44;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:48:479,48,0 chrXIV 774492 . A G 377 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.038;DP=73;Dels=0.00;FS=3.539;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=21.22;MQ0=20;MQRankSum=4.138;QD=5.16;ReadPosRankSum=2.456;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:27,46:73:42:410,42,0 chrXIV 774504 . T C 144.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.45;MQ0=12;QD=3.00;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,48:48:18:177,18,0 chrXIV 774506 . T C 231.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.176;DP=48;Dels=0.00;FS=15.614;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.45;MQ0=12;MQRankSum=3.196;QD=4.81;ReadPosRankSum=2.592;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:16,32:48:27:264,27,0 chrXIV 774507 . T C 231.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.68;MQ0=11;QD=4.92;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,47:47:27:264,27,0 chrXIV 774530 . A G 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.477;DP=48;Dels=0.00;FS=20.138;HaplotypeScore=8.8404;MLEAC=1;MLEAF=0.500;MQ=28.80;MQ0=8;MQRankSum=-3.508;QD=0.40;ReadPosRankSum=0.800;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,25:48:49:49,0,214 chrXIV 774533 . C A 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;DP=48;Dels=0.00;FS=13.029;HaplotypeScore=8.0517;MLEAC=1;MLEAF=0.500;MQ=28.74;MQ0=8;MQRankSum=-3.767;QD=0.48;ReadPosRankSum=1.342;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,24:48:53:53,0,169 chrXIV 774599 . T C 1264.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;DP=150;Dels=0.00;FS=24.641;HaplotypeScore=11.4412;MLEAC=1;MLEAF=0.500;MQ=40.38;MQ0=9;MQRankSum=-2.812;QD=8.43;ReadPosRankSum=-0.311;SB=-4.820e+02 GT:AD:DP:GQ:PL 0/1:72,76:150:99:1294,0,812 chrXIV 774663 . C A 2841.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.321;DP=201;Dels=0.00;FS=51.114;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=37.55;MQ0=28;MQRankSum=-3.209;QD=14.13;ReadPosRankSum=2.892;SB=-1.016e+03 GT:AD:DP:GQ:PL 0/1:77,123:201:99:2871,0,601 chrXIV 774736 . A G 1764.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;DP=228;Dels=0.00;FS=6.375;HaplotypeScore=16.8299;MLEAC=1;MLEAF=0.500;MQ=44.13;MQ0=9;MQRankSum=-2.076;QD=7.74;ReadPosRankSum=-0.928;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:112,111:228:99:1794,0,2202 chrXIV 774840 . A G 1592.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.513;DP=384;Dels=0.00;FS=13.521;HaplotypeScore=42.0017;MLEAC=1;MLEAF=0.500;MQ=47.40;MQ0=36;MQRankSum=-12.817;QD=4.15;ReadPosRankSum=-1.030;SB=-7.550e+02 GT:AD:DP:GQ:PL 0/1:228,149:384:99:1622,0,4844 chrXIV 774888 . G A 4495.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.593;DP=506;Dels=0.00;FS=18.800;HaplotypeScore=19.6527;MLEAC=1;MLEAF=0.500;MQ=48.16;MQ0=24;MQRankSum=-11.788;QD=8.88;ReadPosRankSum=1.178;SB=-1.545e+03 GT:AD:DP:GQ:PL 0/1:256,247:506:99:4495,0,5396 chrXIV 775031 . G A 2114.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.097;DP=586;Dels=0.00;FS=4.359;HaplotypeScore=36.7737;MLEAC=1;MLEAF=0.500;MQ=36.12;MQ0=74;MQRankSum=-9.720;QD=3.61;ReadPosRankSum=1.559;SB=-1.251e+03 GT:AD:DP:GQ:PL 0/1:316,268:586:99:2144,0,5793 chrXIV 775095 . T C 1392.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.234;DP=674;Dels=0.00;FS=256.225;HaplotypeScore=15.0171;MLEAC=1;MLEAF=0.500;MQ=39.52;MQ0=119;MQRankSum=-13.241;QD=2.07;ReadPosRankSum=-0.079;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:412,259:674:99:1422,0,9070 chrXIV 775176 . A T 719.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.031;DP=467;Dels=0.00;FS=153.437;HaplotypeScore=45.0972;MLEAC=1;MLEAF=0.500;MQ=34.33;MQ0=74;MQRankSum=0.665;QD=1.54;ReadPosRankSum=-0.577;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:323,144:467:99:749,0,6051 chrXIV 775314 . C T 1881.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.261;DP=425;Dels=0.00;FS=572.853;HaplotypeScore=25.9170;MLEAC=1;MLEAF=0.500;MQ=20.49;MQ0=99;MQRankSum=9.890;QD=4.43;ReadPosRankSum=1.063;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:248,174:425:99:1911,0,1583 chrXIV 775332 . G A 1119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;DP=382;Dels=0.00;FS=410.853;HaplotypeScore=4.8465;MLEAC=1;MLEAF=0.500;MQ=19.07;MQ0=102;MQRankSum=7.766;QD=2.93;ReadPosRankSum=-0.119;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:245,134:382:99:1149,0,1661 chrXIV 775406 . A G 1104 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.033;DP=373;Dels=0.00;FS=7.032;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=11.38;MQ0=236;MQRankSum=-0.638;QD=2.96;ReadPosRankSum=3.098;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:118,252:373:99:1137,108,0 chrXIV 775521 . C T 1143.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.443;DP=460;Dels=0.00;FS=259.507;HaplotypeScore=38.6241;MLEAC=1;MLEAF=0.500;MQ=33.86;MQ0=5;MQRankSum=7.119;QD=2.48;ReadPosRankSum=-0.250;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:366,93:460:99:1173,0,7101 chrXIV 775628 . C T 818.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.302;DP=359;Dels=0.00;FS=20.795;HaplotypeScore=1.3670;MLEAC=1;MLEAF=0.500;MQ=15.67;MQ0=265;MQRankSum=1.025;QD=2.28;ReadPosRankSum=-0.259;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:165,190:359:99:848,0,1022 chrXIV 775798 . T G 3219.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.145;DP=405;Dels=0.00;FS=11.998;HaplotypeScore=33.2728;MLEAC=1;MLEAF=0.500;MQ=41.26;MQ0=27;MQRankSum=-4.977;QD=7.95;ReadPosRankSum=3.878;SB=-1.679e+03 GT:AD:DP:GQ:PL 0/1:215,188:405:99:3249,0,4036 chrXIV 775827 . G A 3464.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.707;DP=378;Dels=0.00;FS=58.865;HaplotypeScore=45.2981;MLEAC=1;MLEAF=0.500;MQ=34.02;MQ0=77;MQRankSum=-3.162;QD=9.16;ReadPosRankSum=1.556;SB=-9.180e+02 GT:AD:DP:GQ:PL 0/1:154,224:378:99:3464,0,1568 chrXIV 775974 . A G 1989.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;DP=568;Dels=0.00;FS=91.822;HaplotypeScore=28.5522;MLEAC=1;MLEAF=0.500;MQ=42.50;MQ0=57;MQRankSum=-10.824;QD=3.50;ReadPosRankSum=1.763;SB=-5.930e+02 GT:AD:DP:GQ:PL 0/1:371,194:568:99:2019,0,8066 chrXIV 776067 . A C 5823.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.447;DP=358;Dels=0.00;FS=17.616;HaplotypeScore=11.4127;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=28;MQRankSum=8.547;QD=16.27;ReadPosRankSum=3.736;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:57,299:358:12:5823,12,0 chrXIV 776075 . T C 5536.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.086;DP=322;Dels=0.00;FS=6.545;HaplotypeScore=8.4257;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=17;MQRankSum=6.815;QD=17.19;ReadPosRankSum=3.633;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:37,284:322:99:5536,251,0 chrXIV 776259 . G A 294.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;DP=189;Dels=0.00;FS=15.286;HaplotypeScore=17.7878;MLEAC=1;MLEAF=0.500;MQ=51.63;MQ0=0;MQRankSum=-9.808;QD=1.56;ReadPosRankSum=-0.293;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,44:189:99:324,0,2484 chrXIV 776261 . C T 2481.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;DP=185;Dels=0.00;FS=13.316;HaplotypeScore=23.2539;MLEAC=1;MLEAF=0.500;MQ=51.91;MQ0=0;MQRankSum=9.260;QD=13.41;ReadPosRankSum=-0.949;SB=-6.970e+02 GT:AD:DP:GQ:PL 0/1:37,143:185:99:2511,0,312 chrXIV 776417 . G C 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.939;DP=144;Dels=0.00;FS=14.762;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=2.379;QD=25.81;ReadPosRankSum=-1.414;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:2,138:144:99:3717,379,0 chrXIV 779825 . G T 3762.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.87;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3762,367,0 chrXIV 781298 . A T 357.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;DP=225;Dels=0.00;FS=130.845;HaplotypeScore=12.9021;MLEAC=1;MLEAF=0.500;MQ=46.53;MQ0=4;MQRankSum=-9.717;QD=1.59;ReadPosRankSum=1.856;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:160,65:225:99:387,0,3258 chrXIV 781346 . C T 728.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.592;DP=233;Dels=0.00;FS=175.333;HaplotypeScore=20.6341;MLEAC=1;MLEAF=0.500;MQ=48.48;MQ0=2;MQRankSum=-7.456;QD=3.12;ReadPosRankSum=2.210;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:163,70:233:99:758,0,2956 chrXIV 781349 . G C 748.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.585;DP=222;Dels=0.00;FS=123.058;HaplotypeScore=15.8926;MLEAC=1;MLEAF=0.500;MQ=48.58;MQ0=2;MQRankSum=-7.934;QD=3.37;ReadPosRankSum=1.017;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:151,71:222:99:778,0,2872 chrXIV 781354 . A G 625.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.890;DP=227;Dels=0.00;FS=141.937;HaplotypeScore=31.3796;MLEAC=1;MLEAF=0.500;MQ=49.58;MQ0=2;MQRankSum=-7.963;QD=2.75;ReadPosRankSum=-0.850;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:151,75:227:99:655,0,3039 chrXIV 781833 . T C 2146 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.187;DP=160;Dels=0.00;FS=16.365;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=37.31;MQ0=30;MQRankSum=6.436;QD=13.41;ReadPosRankSum=-4.071;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:49,110:160:99:2179,222,0 chrXIV 781885 . A C 39.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.255;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=6.76;MQ0=69;MQRankSum=4.048;QD=0.43;ReadPosRankSum=-3.029;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:84,9:94:9:72,9,0 chrXIV 781889 . C T 41.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.860;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=6.92;MQ0=72;MQRankSum=4.133;QD=0.43;ReadPosRankSum=-1.803;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:86,11:98:9:74,9,0 chrXIV 781941 . T C 875.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.015;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.4964;MLEAC=1;MLEAF=0.500;MQ=20.28;MQ0=52;MQRankSum=-0.888;QD=6.30;ReadPosRankSum=1.030;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,91:139:99:905,0,232 chrXIV 781950 . T C 234.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4964;MLEAC=1;MLEAF=0.500;MQ=20.54;MQ0=49;MQRankSum=0.159;QD=1.64;ReadPosRankSum=-0.719;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,46:143:99:264,0,952 chrXIV 781953 . C T 227.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.449;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.4964;MLEAC=1;MLEAF=0.500;MQ=20.47;MQ0=50;MQRankSum=-0.505;QD=1.53;ReadPosRankSum=-1.091;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:98,50:148:99:257,0,986 chrXIV 781974 . C T 248.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.837;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=19.92;MQ0=62;MQRankSum=-2.950;QD=1.43;ReadPosRankSum=0.501;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,69:174:99:278,0,1070 chrXIV 782019 . T G 108.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=15.39;MQ0=109;MQRankSum=-4.737;QD=0.61;ReadPosRankSum=0.687;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,122:178:99:138,0,436 chrXIV 782284 . G T 75.51 filter AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=2.80;MQ0=247;QD=0.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:180,71:253:12:108,12,0 chrXIV 783181 . A T 99.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.70;MQ0=26;QD=1.80;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,55:55:15:132,15,0 chrXIV 783186 . T A 91.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.70;MQ0=26;QD=1.57;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,58:58:15:124,15,0 chrXIV 783187 . A C 96.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.70;MQ0=26;QD=1.66;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,58:58:15:129,15,0 chrXIV 783201 . A G 130.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.557;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.11;MQ0=26;MQRankSum=2.847;QD=1.81;ReadPosRankSum=-2.224;SB=-1.415e-01 GT:AD:DP:GQ:PL 1/1:27,45:72:18:163,18,0 chrXIV 783208 . C G 129.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.357;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.75;MQ0=26;MQRankSum=2.432;QD=1.68;ReadPosRankSum=-1.364;SB=-1.419e-01 GT:AD:DP:GQ:PL 1/1:36,41:77:18:162,18,0 chrXIV 783222 . G T 137.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.262;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=15.18;MQ0=21;MQRankSum=2.951;QD=1.83;ReadPosRankSum=-2.728;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:31,44:75:18:170,18,0 chrXIV 783224 . T C 128.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.657;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=15.18;MQ0=21;MQRankSum=2.750;QD=1.71;ReadPosRankSum=-1.948;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:31,44:75:18:161,18,0 chrXIV 783244 . G T 113.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.550;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=17.38;MQ0=3;MQRankSum=3.129;QD=1.99;ReadPosRankSum=1.971;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:13,44:57:15:146,15,0 chrXIV 783255 . T C 44.97 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.08;MQ0=0;QD=1.07;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,42:42:9:77,9,0 chrXIV 783370 . G A 39.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.296;DP=11;Dels=0.00;FS=14.771;HaplotypeScore=1.9930;MLEAC=2;MLEAF=1.00;MQ=21.53;MQ0=1;MQRankSum=-2.166;QD=3.63;ReadPosRankSum=-1.386;SB=-1.785e+01 GT:AD:DP:GQ:PL 1/1:4,7:11:9:72,9,0 chrXIV 783376 . A T 108.34 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;DP=16;Dels=0.00;FS=30.004;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=23.00;MQ0=2;MQRankSum=-1.485;QD=6.77;ReadPosRankSum=-2.758;SB=-3.339e+00 GT:AD:DP:GQ:PL 0/1:5,11:16:8:138,0,8 chrXIV 783452 . G A 366.14 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.808;DP=93;Dels=0.00;FS=16.062;HaplotypeScore=9.7184;MLEAC=1;MLEAF=0.500;MQ=16.75;MQ0=5;MQRankSum=2.621;QD=3.94;ReadPosRankSum=0.209;SB=-3.152e+00 GT:AD:DP:GQ:PL 0/1:27,66:93:12:396,0,12 chrXIV 783490 . A C 138.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=50;Dels=0.00;FS=24.988;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=19.96;MQ0=6;MQRankSum=2.654;QD=2.76;ReadPosRankSum=2.840;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:3,47:50:21:171,21,0 chrXIV 783491 . G T 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.867;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=1;MLEAF=0.500;MQ=20.50;MQ0=6;MQRankSum=0.828;QD=1.45;ReadPosRankSum=-1.338;SB=-1.197e-02 GT:AD:DP:GQ:PL 0/1:15,34:49:26:101,0,26 chrXIV 783507 . T A 139.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=20.10;MQ0=7;MQRankSum=0.577;QD=2.67;ReadPosRankSum=1.655;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,51:52:21:172,21,0 chrXIV 783549 . T C 28.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.417;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=5.4453;MLEAC=1;MLEAF=0.500;MQ=19.33;MQ0=7;MQRankSum=-0.639;QD=0.85;ReadPosRankSum=0.028;SB=-9.959e-03 GT:AD:DP:GQ:PL 0/1:8,25:33:28:58,0,28 chrXIV 783551 . G A 83.26 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=5.4453;MLEAC=2;MLEAF=1.00;MQ=19.67;MQ0=7;QD=2.69;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,31:31:15:116,15,0 chrXIV 783585 . C G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.217;DP=26;Dels=0.00;FS=45.699;HaplotypeScore=22.2052;MLEAC=2;MLEAF=1.00;MQ=19.17;MQ0=1;MQRankSum=1.670;QD=0.46;ReadPosRankSum=-3.257;SB=0.769 GT:AD:DP:GQ:PL 1/1:11,15:26:6:43,6,0 chrXIV 783590 . A T 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.594;DP=26;Dels=0.00;FS=20.017;HaplotypeScore=10.6313;MLEAC=1;MLEAF=0.500;MQ=19.17;MQ0=1;MQRankSum=1.816;QD=1.50;ReadPosRankSum=1.890;SB=-2.504e+00 GT:AD:DP:GQ:PL 0/1:22,4:26:28:69,0,28 chrXIV 783643 . T C 161.06 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.89;MQ0=1;QD=2.88;SB=-2.431e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:21:194,21,0 chrXIV 783694 . G A 102.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;DP=52;Dels=0.00;FS=1.719;HaplotypeScore=44.8654;MLEAC=1;MLEAF=0.500;MQ=18.69;MQ0=1;MQRankSum=-0.569;QD=1.96;ReadPosRankSum=-3.267;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:34,18:52:99:132,0,239 chrXIV 783699 . G T 165.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.896;DP=49;Dels=0.00;FS=16.243;HaplotypeScore=41.1296;MLEAC=1;MLEAF=0.500;MQ=18.40;MQ0=2;MQRankSum=-0.045;QD=3.37;ReadPosRankSum=3.436;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,27:49:99:195,0,164 chrXIV 783714 . G A 353.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.776;DP=60;Dels=0.03;FS=0.000;HaplotypeScore=9.4941;MLEAC=1;MLEAF=0.500;MQ=19.90;MQ0=8;MQRankSum=1.110;QD=5.88;ReadPosRankSum=0.740;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,33:58:99:383,0,187 chrXIV 783722 . A G 465.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.326;DP=77;Dels=0.00;FS=19.148;HaplotypeScore=14.0006;MLEAC=1;MLEAF=0.500;MQ=22.42;MQ0=9;MQRankSum=1.109;QD=6.04;ReadPosRankSum=0.582;SB=-1.220e+02 GT:AD:DP:GQ:PL 0/1:20,51:77:99:495,0,194 chrXIV 783724 . G A 528.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;DP=84;Dels=0.00;FS=20.112;HaplotypeScore=12.5006;MLEAC=1;MLEAF=0.500;MQ=22.98;MQ0=10;MQRankSum=1.660;QD=6.29;ReadPosRankSum=0.348;SB=-2.210e+02 GT:AD:DP:GQ:PL 0/1:20,60:84:99:558,0,181 chrXIV 783728 . A C 61.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;DP=103;Dels=0.00;FS=48.956;HaplotypeScore=19.2865;MLEAC=1;MLEAF=0.500;MQ=24.33;MQ0=10;MQRankSum=-0.473;QD=0.59;ReadPosRankSum=0.139;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,14:103:91:91,0,989 chrXIV 783796 . G T 111.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.470;DP=206;Dels=0.00;FS=147.423;HaplotypeScore=14.4309;MLEAC=1;MLEAF=0.500;MQ=26.13;MQ0=16;MQRankSum=-5.572;QD=0.54;ReadPosRankSum=3.747;SB=-4.795e-03 GT:AD:DP:GQ:PL 0/1:154,47:206:99:141,0,3760 chrXIV 783841 . T C 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;DP=147;Dels=0.00;FS=4.305;HaplotypeScore=100.7150;MLEAC=1;MLEAF=0.500;MQ=25.14;MQ0=9;MQRankSum=4.031;QD=0.34;ReadPosRankSum=-5.091;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,13:147:80:80,0,1877 chrXIV 783867 . G A 1589 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.009;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=40.1081;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=4;MQRankSum=-1.537;QD=16.21;ReadPosRankSum=-2.019;SB=3.747e-04 GT:AD:DP:GQ:PL 1/1:7,87:98:99:1622,156,0 chrXIV 783883 . G A 115.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=98.3387;MLEAC=1;MLEAF=0.500;MQ=26.57;MQ0=1;MQRankSum=0.079;QD=2.45;ReadPosRankSum=-1.114;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,18:47:99:145,0,292 chrXIV 783914 . T G 411 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.123;DP=66;Dels=0.00;FS=10.584;HaplotypeScore=103.7919;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;MQRankSum=1.791;QD=6.23;ReadPosRankSum=4.290;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:7,59:66:48:444,48,0 chrXIV 783918 . G T 469 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.102;DP=67;Dels=0.00;FS=30.176;HaplotypeScore=89.4379;MLEAC=2;MLEAF=1.00;MQ=27.49;MQ0=0;MQRankSum=1.181;QD=7.00;ReadPosRankSum=-1.149;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:13,54:67:54:502,54,0 chrXIV 783923 . G A 590 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=6.111;DP=86;Dels=0.00;FS=74.423;HaplotypeScore=70.2062;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;MQRankSum=-0.055;QD=6.86;ReadPosRankSum=0.904;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:29,57:86:40:623,40,0 chrXIV 783929 . A G 900 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=64.2137;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=9.00;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:933,99,0 chrXIV 783946 . G A 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DP=148;Dels=0.00;FS=156.417;HaplotypeScore=57.9368;MLEAC=1;MLEAF=0.500;MQ=27.45;MQ0=0;MQRankSum=-0.025;QD=0.07;ReadPosRankSum=1.395;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,32:148:40:40,0,1366 chrXIV 783968 . C G 2361 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=201;Dels=0.00;FS=16.401;HaplotypeScore=177.1911;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=1;MQRankSum=0.970;QD=11.75;ReadPosRankSum=-0.189;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:3,168:201:99:2394,249,0 chrXIV 783972 . A T 2301 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=199;Dels=0.00;FS=15.587;HaplotypeScore=77.1515;MLEAC=2;MLEAF=1.00;MQ=27.42;MQ0=1;MQRankSum=2.099;QD=11.56;ReadPosRankSum=0.180;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:3,171:199:99:2334,237,0 chrXIV 783973 . A G 2143 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.505;DP=200;Dels=0.00;FS=53.888;HaplotypeScore=91.8899;MLEAC=2;MLEAF=1.00;MQ=27.38;MQ0=1;MQRankSum=0.907;QD=10.71;ReadPosRankSum=1.392;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:24,171:200:99:2176,120,0 chrXIV 784077 . G A 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;DP=301;Dels=0.02;FS=3.229;HaplotypeScore=357.3961;MLEAC=1;MLEAF=0.500;MQ=23.88;MQ0=29;MQRankSum=-0.101;QD=0.12;ReadPosRankSum=1.204;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:272,20:296:66:66,0,400 chrXIV 784217 . T G 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.125;DP=116;Dels=0.02;FS=6.654;HaplotypeScore=71.7456;MLEAC=1;MLEAF=0.500;MQ=24.17;MQ0=13;MQRankSum=0.148;QD=0.16;ReadPosRankSum=-1.418;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,10:114:49:49,0,203 chrXV 48 . A C 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;DP=40;Dels=0.05;FS=0.000;HaplotypeScore=29.7625;MLEAC=1;MLEAF=0.500;MQ=24.15;MQ0=7;MQRankSum=-2.009;QD=1.68;ReadPosRankSum=-0.293;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:29,8:38:97:97,0,231 chrXV 770 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.09;MQ0=5;QD=1.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrXV 783 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.50;MQ0=5;QD=1.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,5:8:6:43,6,0 chrXV 11545 . G A 3764.01 filter AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=5;QD=22.54;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3764,455,0 chrXV 11548 . T C 3835.01 filter AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.62;MQ0=7;QD=22.69;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3835,464,0 chrXV 11613 . G C 483 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.595;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=17.41;MQ0=4;MQRankSum=2.439;QD=13.42;ReadPosRankSum=-1.505;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,28:36:47:516,47,0 chrXV 11627 . G A 72.79 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=13.91;MQ0=4;MQRankSum=2.637;QD=4.85;ReadPosRankSum=-2.637;SB=0.658 GT:AD:DP:GQ:PL 0/1:8,7:15:4:102,0,4 chrXV 11855 . G A 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.112;DP=26;Dels=0.00;FS=38.894;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=11.88;MQ0=5;MQRankSum=-1.082;QD=0.54;ReadPosRankSum=1.902;SB=1.45 GT:AD:DP:GQ:PL 1/1:8,18:26:6:45,6,0 chrXV 14717 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=1.72;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrXV 14718 . T G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=1.72;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrXV 14732 . T G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=2.01;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:43,6,0 chrXV 14740 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=2.41;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrXV 14742 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=2.41;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrXV 14755 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=2.41;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrXV 14762 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:43,6,0 chrXV 14901 . T A 162.01 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=16.20;SB=-8.689e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:27:195,27,0 chrXV 14917 . A G 162.01 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=16.20;SB=-8.689e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:27:195,27,0 chrXV 14931 . C T 162.01 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=16.20;SB=-8.689e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:27:195,27,0 chrXV 14938 . A G 162.01 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.42;MQ0=0;QD=14.73;SB=-8.696e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:27:195,27,0 chrXV 14951 . G A 162.01 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=13.50;SB=-8.689e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:27:195,27,0 chrXV 15041 . A T 161.06 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=7.67;SB=-7.494e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:21:194,21,0 chrXV 15057 . C T 351 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=14.04;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:42:384,42,0 chrXV 15060 . G T 373 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=14.35;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:42:406,42,0 chrXV 15078 . A G 351 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=13.00;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:42:384,42,0 chrXV 15083 . G A 375 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=13.89;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:42:408,42,0 chrXV 15100 . T G 344 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=13.23;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:42:377,42,0 chrXV 15114 . T C 337 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=15.32;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:39:370,39,0 chrXV 15118 . A G 312 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=15.60;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:39:345,39,0 chrXV 15134 . C G 81.51 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=8.15;SB=-2.249e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:114,12,0 chrXV 15239 . T C 446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=24;Dels=0.00;FS=19.638;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.052;QD=18.58;ReadPosRankSum=2.246;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,22:24:51:479,51,0 chrXV 15266 . T G 667 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.21;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:700,75,0 chrXV 15292 . T C 676 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.48;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:709,75,0 chrXV 15299 . A G 664 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.12;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:697,75,0 chrXV 15487 . C T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.30;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:57,6,0 chrXV 15500 . T C 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.30;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:57,6,0 chrXV 15502 . G T 28.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.79;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:60,6,0 chrXV 15519 . C G 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.94;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:59,6,0 chrXV 15520 . C A 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.94;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:59,6,0 chrXV 15523 . A G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.95;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:55,6,0 chrXV 15524 . A G 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.94;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:59,6,0 chrXV 15529 . T A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.44;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:57,6,0 chrXV 15530 . A G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.95;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:55,6,0 chrXV 15531 . T G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.95;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:55,6,0 chrXV 15534 . G A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=1.9894;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.44;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:57,6,0 chrXV 15538 . G A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=1.9894;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.44;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:57,6,0 chrXV 16755 . T C 79.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.733;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;MQRankSum=-1.271;QD=7.93;ReadPosRankSum=1.733;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:2,8:10:15:112,15,0 chrXV 16765 . A G 158.03 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.41;MQ0=0;QD=12.16;SB=-3.987e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:24:191,24,0 chrXV 16767 . A C 161.03 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.41;MQ0=0;QD=12.39;SB=-3.987e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:24:194,24,0 chrXV 16788 . G T 204 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.13;MQ0=0;QD=10.74;SB=-1.518e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:30:237,30,0 chrXV 16800 . G A 203 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=10.15;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:30:236,30,0 chrXV 16802 . A G 203 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=10.15;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:30:236,30,0 chrXV 16808 . C T 205 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=19.3302;MLEAC=2;MLEAF=1.00;MQ=19.85;MQ0=0;QD=9.76;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:30:238,30,0 chrXV 16825 . T G 167.03 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=8.35;SB=-4.095e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:24:200,24,0 chrXV 16841 . A T 99.26 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=6.62;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:132,15,0 chrXV 16852 . A G 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=3.90;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:71,9,0 chrXV 16855 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.92;MQ0=0;QD=1.51;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:43,6,0 chrXV 16857 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.92;MQ0=0;QD=1.51;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:43,6,0 chrXV 16948 . T C 471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.131;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.55;MQ0=0;MQRankSum=-1.423;QD=16.24;ReadPosRankSum=3.131;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:4,25:29:69:504,69,0 chrXV 16956 . G A 714 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.37;MQ0=0;QD=16.60;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:43:99:747,101,0 chrXV 16970 . T C 1626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.002;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=18.69;MQ0=0;MQRankSum=-2.338;QD=18.48;ReadPosRankSum=2.338;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1659,221,0 chrXV 17004 . C A 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.49;MQ0=0;MQRankSum=-1.664;QD=20.76;ReadPosRankSum=0.943;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2130,278,0 chrXV 17005 . C T 2115 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.49;MQ0=0;QD=20.94;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2148,281,0 chrXV 17031 . C A 1630 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.02;MQ0=0;QD=21.17;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1663,215,0 chrXV 17057 . C T 533 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.56;MQ0=0;QD=19.74;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:69:566,69,0 chrXV 17098 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=8.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:49,6,0 chrXV 17139 . C T 386 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.25;MQ0=0;QD=15.44;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:57:419,57,0 chrXV 17173 . A G 1026 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.03;MQ0=0;MQRankSum=-1.376;QD=15.09;ReadPosRankSum=1.681;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1059,140,0 chrXV 17176 . G A 1029 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.84;MQ0=0;QD=15.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1062,140,0 chrXV 17238 . G T 392 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=29.25;MQ0=0;QD=5.23;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:45:425,45,0 chrXV 17255 . A G 407 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=29.19;MQ0=0;QD=4.11;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,99:99:48:440,48,0 chrXV 17268 . C G 490 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=0;QD=5.27;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:57:523,57,0 chrXV 17278 . C T 495 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.27;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:57:528,57,0 chrXV 17287 . A G 479 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.89;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,98:98:57:512,57,0 chrXV 17293 . C T 485 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=5.27;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:54:518,54,0 chrXV 17315 . G A 338 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=4.90;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:39:371,39,0 chrXV 17322 . T G 211.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;MQRankSum=1.615;QD=3.58;ReadPosRankSum=1.674;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:1,58:59:27:244,27,0 chrXV 17324 . C T 221.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=3.75;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,59:59:27:254,27,0 chrXV 17375 . G C 89.26 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.03;MQ0=0;QD=5.58;SB=-2.227e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:15:122,15,0 chrXV 17381 . T C 62.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.05;MQ0=0;QD=4.47;SB=-5.052e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:95,12,0 chrXV 17382 . T C 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.05;MQ0=0;QD=4.39;SB=-5.052e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:94,12,0 chrXV 17386 . C A 59.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.05;MQ0=0;QD=4.25;SB=-5.552e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:92,12,0 chrXV 17390 . A G 140.03 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.45;MQ0=0;QD=7.78;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:24:173,24,0 chrXV 17398 . A G 261 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=0;QD=9.32;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,26:28:36:294,36,0 chrXV 17406 . G T 634 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=0;QD=13.78;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:75:667,75,0 chrXV 17450 . G C 4206.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=29.06;MQ0=0;QD=24.74;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4206,444,0 chrXV 17525 . G A 5202.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=23.97;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5202,546,0 chrXV 17554 . G A 2864 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=0;QD=22.37;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2897,318,0 chrXV 17568 . T C 1355 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.14;MQ0=0;QD=21.85;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1388,167,0 chrXV 17578 . C T 1024 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.46;MQ0=0;QD=22.76;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1057,131,0 chrXV 17587 . G A 601 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.79;MQ0=0;QD=22.26;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:81:634,81,0 chrXV 17602 . C T 577 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.46;MQ0=0;QD=23.08;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:72:610,72,0 chrXV 17629 . A G 772 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;MQRankSum=1.639;QD=20.86;ReadPosRankSum=1.639;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,36:37:87:805,87,0 chrXV 17634 . A T 806 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:87:839,87,0 chrXV 17635 . A G 784 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:87:817,87,0 chrXV 17641 . A G 756 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:84:789,84,0 chrXV 17642 . T A 764 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:84:797,84,0 chrXV 17647 . A T 960 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:993,102,0 chrXV 17652 . C T 1146 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1179,123,0 chrXV 17661 . G A 1394 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1427,147,0 chrXV 17668 . T G 1560 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=14.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1593,171,0 chrXV 17689 . A G 1929 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=14.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1962,216,0 chrXV 17690 . G T 2005 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;MQRankSum=-1.399;QD=14.85;ReadPosRankSum=1.270;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2038,216,0 chrXV 17699 . T C 2205 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=15.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2238,237,0 chrXV 17700 . T C 2184 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=15.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2217,237,0 chrXV 17701 . G C 2109 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=14.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2142,237,0 chrXV 17719 . G A 2097 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=13.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2130,228,0 chrXV 17722 . G A 2100 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=0;QD=14.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2133,231,0 chrXV 17727 . T C 2091 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=14.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2124,234,0 chrXV 17749 . T G 1458 filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=0;QD=13.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1491,171,0 chrXV 17771 . C T 619 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=0;QD=9.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:78:652,78,0 chrXV 17782 . A G 399 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.28;MQ0=0;QD=9.73;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:51:432,51,0 chrXV 19524 . T C 686 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=0;QD=25.41;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:75:719,75,0 chrXV 19560 . T C 219 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=2.7781;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=18.25;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:30:252,30,0 chrXV 19562 . C T 152.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=1.9894;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=16.90;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:21:185,21,0 chrXV 19565 . A T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.406;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=1.9894;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;MQRankSum=-1.537;QD=5.50;ReadPosRankSum=-0.406;SB=2.03 GT:AD:DP:GQ:PL 1/1:3,3:6:9:65,9,0 chrXV 19587 . A G 359 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.96;MQ0=0;QD=21.12;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:51:392,51,0 chrXV 19593 . G C 417 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.90;MQ0=0;QD=21.95;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:57:450,57,0 chrXV 19629 . C T 458 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.31;MQ0=0;QD=22.90;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:60:491,60,0 chrXV 19641 . G T 476 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.77;MQ0=0;QD=20.70;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:63:509,63,0 chrXV 19671 . C T 499 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.49;MQ0=0;QD=16.63;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:60:532,60,0 chrXV 19683 . T C 437 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;QD=16.19;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:51:470,51,0 chrXV 19685 . T C 447 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=17.19;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:51:480,51,0 chrXV 19692 . A G 411 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=0;QD=12.84;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:48:444,48,0 chrXV 19694 . C T 459 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=0;QD=14.34;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:54:492,54,0 chrXV 19701 . C T 486 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.65;MQ0=0;QD=12.79;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:54:519,54,0 chrXV 19704 . T A 474 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=0;QD=11.29;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:54:507,54,0 chrXV 19712 . T G 531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=3.074;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=0;MQRankSum=0.027;QD=11.54;ReadPosRankSum=2.343;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:2,44:46:60:564,60,0 chrXV 19716 . G A 566 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=0;QD=12.04;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:63:599,63,0 chrXV 19731 . A G 647 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=12.69;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:75:680,75,0 chrXV 19749 . G A 532 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=12.09;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:60:565,60,0 chrXV 19754 . C A 396 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=0;QD=9.66;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:45:429,45,0 chrXV 19758 . C A 320 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.84;MQ0=0;QD=9.14;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:39:353,39,0 chrXV 19764 . A G 243 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=7.59;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:30:276,30,0 chrXV 19765 . C T 243 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=7.59;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:30:276,30,0 chrXV 19767 . A T 239 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=7.47;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:30:272,30,0 chrXV 19773 . G C 264 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=0;QD=7.76;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:33:297,33,0 chrXV 19787 . A G 239 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=9.96;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:30:272,30,0 chrXV 19794 . T G 228 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.45;MQ0=0;QD=11.40;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:30:261,30,0 chrXV 19797 . C A 215.01 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=0;QD=11.32;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:27:248,27,0 chrXV 19815 . A T 46.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=5.87;SB=-5.285e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:79,9,0 chrXV 19824 . G A 40.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.27;MQ0=0;QD=5.12;SB=-2.291e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:73,9,0 chrXV 19827 . G A 38.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.27;MQ0=0;QD=4.87;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:71,9,0 chrXV 19836 . T C 36.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.27;MQ0=0;QD=4.62;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:69,9,0 chrXV 19839 . T C 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.27;MQ0=0;QD=4.75;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:70,9,0 chrXV 19842 . G A 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.27;MQ0=0;QD=4.75;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:70,9,0 chrXV 19848 . G A 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=0;QD=5.85;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:73,9,0 chrXV 19860 . G A 32.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=4.71;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrXV 19866 . T A 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=0;MQRankSum=0.742;QD=4.71;ReadPosRankSum=0.742;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:1,6:7:9:65,9,0 chrXV 19872 . C T 75.26 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=0;QD=5.02;SB=-2.226e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:108,15,0 chrXV 19878 . G A 233 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=20.97;MQ0=0;QD=10.59;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,21:22:36:266,36,0 chrXV 19911 . G A 1851 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=24.85;MQ0=0;QD=22.04;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1884,216,0 chrXV 19950 . A G 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=3.750;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.80;MQ0=0;MQRankSum=0.605;QD=21.89;ReadPosRankSum=1.690;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1850,213,0 chrXV 19959 . G A 1811 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.96;MQ0=0;QD=22.36;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1844,210,0 chrXV 19992 . C T 233 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=10.59;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,20:22:36:266,36,0 chrXV 19998 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.720;DP=6;Dels=0.00;FS=3.310;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;MQRankSum=-1.380;QD=2.01;ReadPosRankSum=0.720;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:2,4:6:6:43,6,0 chrXV 20043 . A C 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=4.46;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:49,6,0 chrXV 20049 . C T 89.26 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=0;QD=12.75;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:122,15,0 chrXV 20052 . C T 94.26 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=0;QD=13.47;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:127,15,0 chrXV 20057 . C T 80.26 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=0;QD=11.47;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:113,15,0 chrXV 20058 . G A 83.26 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=0;QD=11.89;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:116,15,0 chrXV 20061 . T C 127.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=12.71;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:160,21,0 chrXV 20067 . G T 156.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=13.00;SB=-3.878e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:24:189,24,0 chrXV 20073 . C G 188.01 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=14.46;SB=-2.272e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:221,27,0 chrXV 20094 . C T 353 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=14.71;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:48:386,48,0 chrXV 20103 . G A 399 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.98;MQ0=0;QD=14.78;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:54:432,54,0 chrXV 20121 . T A 585 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.63;MQ0=0;QD=14.62;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:75:618,75,0 chrXV 20127 . T C 589 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.85;MQ0=0;QD=14.02;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:75:622,75,0 chrXV 20157 . C T 421 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.33;MQ0=0;QD=11.69;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:54:454,54,0 chrXV 20165 . A G 332 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.27;MQ0=0;QD=11.07;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:42:365,42,0 chrXV 20166 . T A 324 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.27;MQ0=0;QD=10.80;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:42:357,42,0 chrXV 20169 . T C 307 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.27;MQ0=0;QD=10.23;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:42:340,42,0 chrXV 20196 . G A 174.03 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=0;QD=10.24;SB=-4.069e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:24:207,24,0 chrXV 23131 . C A 36.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=0;QD=3.08;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:69,9,0 chrXV 23134 . A G 60.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=0;QD=5.04;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:93,12,0 chrXV 23137 . T C 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=0;QD=5.54;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:99,12,0 chrXV 23146 . G A 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=0;QD=5.71;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:101,12,0 chrXV 23147 . C G 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=0;QD=5.71;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:101,12,0 chrXV 23149 . C T 70.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=0;QD=5.88;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:103,12,0 chrXV 23158 . C T 68.51 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=4.89;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:101,12,0 chrXV 23164 . C T 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=4.57;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:101,12,0 chrXV 23170 . C T 68.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=17;Dels=0.00;FS=21.335;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=0;MQRankSum=-1.118;QD=4.03;ReadPosRankSum=2.162;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:2,15:17:12:101,12,0 chrXV 23173 . C T 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=0;QD=4.03;SB=-5.752e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:101,12,0 chrXV 23175 . A G 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=0;QD=4.03;SB=-5.552e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:101,12,0 chrXV 23176 . C T 72.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.373;DP=17;Dels=0.00;FS=21.335;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=0;MQRankSum=-0.820;QD=4.27;ReadPosRankSum=2.162;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:2,15:17:12:105,12,0 chrXV 23182 . A G 63.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.205;DP=20;Dels=0.00;FS=22.788;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.18;MQ0=0;MQRankSum=-1.827;QD=3.18;ReadPosRankSum=0.945;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:2,18:20:12:96,12,0 chrXV 23188 . A G 68.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.819;DP=20;Dels=0.00;FS=22.788;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.18;MQ0=0;MQRankSum=-0.693;QD=3.43;ReadPosRankSum=-0.063;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:2,18:20:12:101,12,0 chrXV 23194 . G A 50.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=19;Dels=0.00;FS=22.330;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.46;MQ0=0;MQRankSum=-1.793;QD=2.68;ReadPosRankSum=-1.793;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:2,17:19:9:83,9,0 chrXV 23200 . A T 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.318;DP=18;Dels=0.00;FS=21.847;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;MQRankSum=-1.194;QD=2.72;ReadPosRankSum=-1.756;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:2,16:18:9:81,9,0 chrXV 23203 . A C 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.508;DP=16;Dels=0.00;FS=20.792;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;MQRankSum=-1.350;QD=2.94;ReadPosRankSum=-1.985;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:2,14:16:9:79,9,0 chrXV 23206 . A G 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.369;DP=14;Dels=0.00;FS=19.590;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;MQRankSum=-1.187;QD=3.50;ReadPosRankSum=-2.282;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:2,12:14:9:81,9,0 chrXV 23215 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.666;DP=9;Dels=0.00;FS=15.563;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;MQRankSum=-1.666;QD=2.42;ReadPosRankSum=-1.666;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:2,7:9:6:53,6,0 chrXV 23335 . T C 54.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=9;Dels=0.00;FS=3.332;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;MQRankSum=-2.054;QD=6.06;ReadPosRankSum=2.054;SB=-2.155e+01 GT:AD:DP:GQ:PL 1/1:3,6:9:12:87,12,0 chrXV 23368 . C T 685 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.61;MQ0=0;QD=22.10;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:90:718,90,0 chrXV 23371 . G A 683 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.61;MQ0=0;QD=22.03;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:90:716,90,0 chrXV 23395 . T C 683 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.48;MQ0=0;QD=21.34;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:90:716,90,0 chrXV 23407 . T C 677 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.48;MQ0=0;QD=21.16;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:90:710,90,0 chrXV 23435 . C T 97.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:7:18:130,18,0 chrXV 23530 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrXV 23536 . C T 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=9.99;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:72,9,0 chrXV 23539 . A G 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=9.74;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:71,9,0 chrXV 23545 . A G 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=10.25;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:94,12,0 chrXV 23554 . G A 92.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=0;QD=10.25;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:125,15,0 chrXV 23563 . G A 89.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=8.93;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:122,15,0 chrXV 23569 . A G 95.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=8.66;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:15:128,15,0 chrXV 23575 . G A 111.13 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.34;MQ0=0;QD=8.55;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:144,18,0 chrXV 23587 . T C 129.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=8.60;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:162,21,0 chrXV 23589 . A T 128.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=8.54;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:161,21,0 chrXV 23590 . G A 133.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=8.87;SB=-7.442e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:166,21,0 chrXV 23593 . T G 131.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=8.74;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:164,21,0 chrXV 23608 . A C 105.13 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=0;QD=7.51;SB=-1.415e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:138,18,0 chrXV 23611 . G A 86.26 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.41;MQ0=0;QD=6.64;SB=-2.718e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:119,15,0 chrXV 23620 . A G 86.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.41;MQ0=0;MQRankSum=-0.935;QD=6.64;ReadPosRankSum=1.470;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:1,12:13:15:119,15,0 chrXV 23629 . C T 58.51 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=5.85;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:91,12,0 chrXV 23644 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=2.01;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:43,6,0 chrXV 23659 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.48;MQ0=1;QD=2.41;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,4:5:6:43,6,0 chrXV 23662 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.88;MQ0=1;QD=4.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,2:3:6:43,6,0 chrXV 23902 . T C 57.51 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.63;MQ0=8;QD=1.55;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,37:37:12:90,12,0 chrXV 23914 . T C 78.26 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.34;MQ0=7;QD=1.82;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,43:43:15:111,15,0 chrXV 23917 . T C 78.26 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.68;MQ0=8;QD=1.70;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:1,45:46:15:111,15,0 chrXV 23932 . T C 42.27 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.455;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4413;MLEAC=1;MLEAF=0.500;MQ=19.09;MQ0=9;MQRankSum=-3.028;QD=0.81;ReadPosRankSum=-0.741;SB=-2.716e-01 GT:AD:DP:GQ:PL 0/1:36,16:52:9:72,0,9 chrXV 23935 . G A 42.27 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4413;MLEAC=1;MLEAF=0.500;MQ=19.53;MQ0=7;MQRankSum=-3.950;QD=0.85;ReadPosRankSum=-1.455;SB=-2.716e-01 GT:AD:DP:GQ:PL 0/1:31,19:50:9:72,0,9 chrXV 23953 . C G 119.06 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=4;QD=2.33;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,51:51:21:152,21,0 chrXV 23971 . T C 119.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.6834;MLEAC=2;MLEAF=1.00;MQ=18.25;MQ0=3;MQRankSum=1.417;QD=2.02;ReadPosRankSum=1.669;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,57:59:21:152,21,0 chrXV 23983 . A G 97.13 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=15.23;MQ0=3;QD=1.62;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,60:60:18:130,18,0 chrXV 23986 . T C 97.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.138;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.06;MQ0=3;MQRankSum=-0.690;QD=1.57;ReadPosRankSum=3.273;SB=3.04 GT:AD:DP:GQ:PL 1/1:9,53:62:18:130,18,0 chrXV 24001 . A G 97.13 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.74;MQ0=3;QD=1.43;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:3,65:68:18:130,18,0 chrXV 24006 . T C 75.26 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.65;MQ0=3;QD=1.16;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:3,62:65:15:108,15,0 chrXV 24013 . G A 54.51 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.50;MQ0=1;QD=0.76;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,71:72:12:87,12,0 chrXV 24031 . C A 32.97 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.14;MQ0=0;QD=0.50;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:0,66:66:9:65,9,0 chrXV 24034 . G A 32.97 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.13;MQ0=0;QD=0.54;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,61:61:9:65,9,0 chrXV 24134 . G A 442.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.877;DP=60;Dels=0.00;FS=4.973;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.31;MQ0=16;MQRankSum=4.246;QD=7.37;ReadPosRankSum=5.279;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,46:60:99:472,0,143 chrXV 24136 . A G 113.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;DP=60;Dels=0.00;FS=4.973;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.31;MQ0=16;MQRankSum=-4.548;QD=1.88;ReadPosRankSum=-3.943;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:46,14:60:99:143,0,456 chrXV 24145 . T C 416.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.930;DP=58;Dels=0.00;FS=4.260;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.14;MQ0=10;MQRankSum=4.674;QD=7.17;ReadPosRankSum=1.288;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,40:58:99:446,0,180 chrXV 24157 . C T 211.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DP=48;Dels=0.00;FS=10.344;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.36;MQ0=5;MQRankSum=-5.028;QD=4.40;ReadPosRankSum=2.666;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:28,20:48:99:241,0,257 chrXV 24168 . C A 108.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;DP=47;Dels=0.00;FS=8.952;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=19.28;MQ0=4;MQRankSum=4.567;QD=2.30;ReadPosRankSum=-3.853;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,22:47:99:138,0,331 chrXV 24175 . C T 388.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.694;DP=49;Dels=0.00;FS=5.121;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=18.50;MQ0=4;MQRankSum=-4.069;QD=7.92;ReadPosRankSum=3.068;SB=-6.502e+01 GT:AD:DP:GQ:PL 0/1:17,32:49:22:418,0,22 chrXV 24190 . C G 465 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.39;MQ0=1;QD=7.38;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,61:63:69:498,69,0 chrXV 24202 . G A 465 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.07;MQ0=0;QD=4.95;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:69:498,69,0 chrXV 24229 . T C 265 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.82;MQ0=0;QD=2.98;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:39:298,39,0 chrXV 25581 . C T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.71;MQ0=0;QD=2.58;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:57,6,0 chrXV 25590 . A G 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.09;MQ0=0;QD=2.15;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:57,6,0 chrXV 25614 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.09;MQ0=0;QD=1.63;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:54,6,0 chrXV 25773 . C T 100.26 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.42;MQ0=8;QD=3.13;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:15:133,15,0 chrXV 25845 . T C 148.06 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.43;MQ0=12;QD=4.11;SB=-5.104e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:21:181,21,0 chrXV 26586 . C T 136.13 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.63;MQ0=35;QD=3.03;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,45:45:18:169,18,0 chrXV 26589 . C T 141.13 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.06;MQ0=36;QD=3.00;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,47:47:18:174,18,0 chrXV 26604 . C T 193.03 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.46;MQ0=48;QD=3.02;SB=-3.987e-02 GT:AD:DP:GQ:PL 1/1:0,64:64:24:226,24,0 chrXV 26643 . G A 571 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.51;MQ0=62;QD=5.89;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,97:97:63:604,63,0 chrXV 26826 . A G 457 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=8;QD=13.06;SB=-6.584e-03 GT:AD:DP:GQ:PL 1/1:0,34:35:51:490,51,0 chrXV 26922 . T A 75.51 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=18.78;MQ0=21;QD=2.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:12:108,12,0 chrXV 27029 . C T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=22.26;MQ0=1;QD=4.30;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:57,6,0 chrXV 27045 . C T 155.06 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.15;MQ0=2;QD=10.34;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:188,21,0 chrXV 27070 . T A 283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.419;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.78;MQ0=2;MQRankSum=0.315;QD=11.79;ReadPosRankSum=1.576;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:33:316,33,0 chrXV 27098 . C T 349 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.76;MQ0=1;QD=12.93;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:39:382,39,0 chrXV 27129 . C T 191.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.46;MQ0=0;QD=9.55;SB=-4.082e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:24:224,24,0 chrXV 27136 . C A 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=0;QD=3.50;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:81,9,0 chrXV 27137 . A T 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=0;QD=5.32;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:107,12,0 chrXV 27140 . C T 84.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=0;QD=6.04;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:117,12,0 chrXV 27153 . T G 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.84;MQ0=0;QD=2.25;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:56,6,0 chrXV 27157 . G A 30.77 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.9525;MLEAC=2;MLEAF=1.00;MQ=24.38;MQ0=0;QD=3.08;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:62,6,0 chrXV 27212 . A T 52.97 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.52;MQ0=0;QD=4.82;SB=-8.847e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:85,9,0 chrXV 27254 . A T 969 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.78;MQ0=7;QD=17.30;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1002,105,0 chrXV 27321 . T C 1170 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=28;QD=12.19;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1203,132,0 chrXV 27515 . A G 4811.01 filter AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=30.57;MQ0=9;QD=23.24;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4811,511,0 chrXV 27523 . A G 4126.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=195;Dels=0.00;FS=5.205;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=29.93;MQ0=16;MQRankSum=1.655;QD=21.16;ReadPosRankSum=1.713;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,191:195:99:4126,459,0 chrXV 27621 . C T 323 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.03;MQ0=78;QD=3.17;SB=-7.475e-03 GT:AD:DP:GQ:PL 1/1:0,100:102:39:356,39,0 chrXV 27793 . C G 602 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=21.76;MQ0=31;QD=9.71;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:69:635,69,0 chrXV 27863 . T A 53.97 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=14.28;MQ0=19;QD=2.16;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:9:86,9,0 chrXV 28443 . T C 158.06 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=4;QD=8.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:21:191,21,0 chrXV 28567 . G A 761 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=2;QD=17.30;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:84:794,84,0 chrXV 28603 . A G 1116 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=22.78;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1149,123,0 chrXV 28631 . C A 1202 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=19.08;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1235,126,0 chrXV 28632 . G A 1205 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=18.83;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1238,126,0 chrXV 29091 . G A 2658.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.374;DP=334;Dels=0.00;FS=227.162;HaplotypeScore=57.6188;MLEAC=1;MLEAF=0.500;MQ=42.18;MQ0=5;MQRankSum=7.098;QD=7.96;ReadPosRankSum=3.366;SB=-6.090e+02 GT:AD:DP:GQ:PL 0/1:172,160:334:99:2688,0,964 chrXV 29237 . A T 1233.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.698;DP=380;Dels=0.00;FS=999.939;HaplotypeScore=28.8980;MLEAC=1;MLEAF=0.500;MQ=28.97;MQ0=2;MQRankSum=-0.999;QD=3.24;ReadPosRankSum=1.275;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:137,243:380:99:1263,0,2044 chrXV 29239 . C G 994.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.642;DP=379;Dels=0.00;FS=979.351;HaplotypeScore=31.2640;MLEAC=1;MLEAF=0.500;MQ=28.83;MQ0=2;MQRankSum=-1.864;QD=2.62;ReadPosRankSum=1.761;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:137,236:379:99:1024,0,1800 chrXV 29240 . G T 822.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.958;DP=377;Dels=0.00;FS=919.282;HaplotypeScore=31.2528;MLEAC=1;MLEAF=0.500;MQ=28.47;MQ0=3;MQRankSum=0.190;QD=2.18;ReadPosRankSum=3.200;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:145,228:377:99:852,0,1929 chrXV 29243 . A G 834.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.263;DP=367;Dels=0.00;FS=915.514;HaplotypeScore=41.7873;MLEAC=1;MLEAF=0.500;MQ=28.37;MQ0=3;MQRankSum=-0.369;QD=2.27;ReadPosRankSum=3.630;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:142,224:366:99:864,0,1965 chrXV 29244 . A G 861.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.709;DP=364;Dels=0.00;FS=976.611;HaplotypeScore=38.8018;MLEAC=1;MLEAF=0.500;MQ=28.34;MQ0=3;MQRankSum=2.314;QD=2.37;ReadPosRankSum=2.888;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:136,227:363:99:891,0,1935 chrXV 29245 . C T 834.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;DP=362;Dels=0.00;FS=961.805;HaplotypeScore=34.8439;MLEAC=1;MLEAF=0.500;MQ=28.34;MQ0=3;MQRankSum=0.709;QD=2.30;ReadPosRankSum=2.902;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:133,226:361:99:864,0,1803 chrXV 29257 . A T 1402.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.957;DP=424;Dels=0.00;FS=891.354;HaplotypeScore=9.6221;MLEAC=1;MLEAF=0.500;MQ=28.03;MQ0=3;MQRankSum=0.298;QD=3.31;ReadPosRankSum=-1.745;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:117,307:424:99:1432,0,1441 chrXV 29259 . T C 1403.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.038;DP=426;Dels=0.00;FS=831.468;HaplotypeScore=16.6655;MLEAC=1;MLEAF=0.500;MQ=28.03;MQ0=3;MQRankSum=1.250;QD=3.29;ReadPosRankSum=-0.878;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:118,307:426:99:1433,0,1426 chrXV 29266 . A G 1350.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.245;DP=396;Dels=0.00;FS=765.602;HaplotypeScore=13.5655;MLEAC=1;MLEAF=0.500;MQ=27.69;MQ0=3;MQRankSum=2.359;QD=3.41;ReadPosRankSum=0.023;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:106,290:396:99:1380,0,1152 chrXV 29267 . A C 1358.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.803;DP=395;Dels=0.00;FS=760.449;HaplotypeScore=13.5655;MLEAC=1;MLEAF=0.500;MQ=27.67;MQ0=3;MQRankSum=2.638;QD=3.44;ReadPosRankSum=0.231;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:105,290:395:99:1388,0,1077 chrXV 29269 . T C 3070 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=389;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=3;QD=7.89;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,387:389:99:3103,339,0 chrXV 29270 . A G 1326.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.430;DP=387;Dels=0.00;FS=718.299;HaplotypeScore=4.7755;MLEAC=1;MLEAF=0.500;MQ=27.56;MQ0=3;MQRankSum=2.498;QD=3.43;ReadPosRankSum=0.439;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:97,290:387:99:1356,0,986 chrXV 29273 . A T 890.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.643;DP=433;Dels=0.00;FS=571.283;HaplotypeScore=1.4972;MLEAC=1;MLEAF=0.500;MQ=27.95;MQ0=3;MQRankSum=-0.909;QD=2.06;ReadPosRankSum=2.514;SB=0.782 GT:AD:DP:GQ:PL 0/1:344,89:433:99:920,0,1372 chrXV 29279 . T C 1758.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.481;DP=435;Dels=0.00;FS=438.439;HaplotypeScore=7.6972;MLEAC=1;MLEAF=0.500;MQ=29.08;MQ0=3;MQRankSum=3.905;QD=4.04;ReadPosRankSum=-0.049;SB=-1.580e+02 GT:AD:DP:GQ:PL 0/1:89,346:435:99:1788,0,633 chrXV 29282 . A G,T 2917.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=424;Dels=0.00;FS=0.000;HaplotypeScore=6.0652;MLEAC=1,1;MLEAF=0.500,0.500;MQ=30.01;MQ0=3;QD=6.88;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/2:0,349,75:424:99:2977,787,523,2190,0,2085 chrXV 29290 . C T 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.765;DP=455;Dels=0.00;FS=259.318;HaplotypeScore=19.9998;MLEAC=1;MLEAF=0.500;MQ=35.42;MQ0=3;MQRankSum=-6.627;QD=0.11;ReadPosRankSum=3.389;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:408,47:455:82:82,0,3475 chrXV 29291 . A G 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.338;DP=460;Dels=0.00;FS=256.387;HaplotypeScore=21.8053;MLEAC=1;MLEAF=0.500;MQ=35.54;MQ0=3;MQRankSum=-6.953;QD=0.07;ReadPosRankSum=3.037;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:413,47:460:61:61,0,3632 chrXV 29309 . A G 4559.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.125;DP=458;Dels=0.00;FS=148.215;HaplotypeScore=5.9616;MLEAC=2;MLEAF=1.00;MQ=40.18;MQ0=3;MQRankSum=7.954;QD=9.95;ReadPosRankSum=5.039;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:35,420:458:99:4559,310,0 chrXV 29324 . G T 6335.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.425;DP=486;Dels=0.00;FS=70.369;HaplotypeScore=26.4971;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=1;MQRankSum=6.557;QD=13.03;ReadPosRankSum=5.521;SB=-3.818e+03 GT:AD:DP:GQ:PL 1/1:17,469:486:99:6335,658,0 chrXV 29592 . A G 8821.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.795;DP=441;Dels=0.00;FS=10.026;HaplotypeScore=28.6201;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=8.366;QD=20.00;ReadPosRankSum=11.409;SB=-4.287e+03 GT:AD:DP:GQ:PL 1/1:52,389:441:99:8821,924,0 chrXV 29642 . A G 648.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.885;DP=458;Dels=0.00;FS=21.470;HaplotypeScore=18.8594;MLEAC=1;MLEAF=0.500;MQ=40.78;MQ0=0;MQRankSum=-7.310;QD=1.41;ReadPosRankSum=2.576;SB=-1.873e+03 GT:AD:DP:GQ:PL 0/1:268,190:458:99:678,0,3859 chrXV 29645 . G A,C 4573.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=442;Dels=0.00;FS=0.000;HaplotypeScore=11.6888;MLEAC=1,1;MLEAF=0.500,0.500;MQ=39.99;MQ0=0;QD=10.35;SB=-4.599e+03 GT:AD:DP:GQ:PL 1/2:0,197,245:442:99:4573,3183,3020,1368,0,960 chrXV 29654 . A T 5375.01 filter AC=2;AF=1.00;AN=2;DP=447;Dels=0.00;FS=0.000;HaplotypeScore=2.8706;MLEAC=2;MLEAF=1.00;MQ=39.61;MQ0=0;QD=12.02;SB=-5.036e+03 GT:AD:DP:GQ:PL 1/1:0,447:447:99:5375,568,0 chrXV 29669 . G A 3316.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.389;DP=483;Dels=0.00;FS=33.274;HaplotypeScore=32.1566;MLEAC=1;MLEAF=0.500;MQ=41.74;MQ0=0;MQRankSum=0.868;QD=6.87;ReadPosRankSum=8.956;SB=-3.363e+03 GT:AD:DP:GQ:PL 0/1:152,328:483:99:3316,0,1308 chrXV 29810 . G A 7189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.902;DP=314;Dels=0.00;FS=3.166;HaplotypeScore=11.8720;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;MQRankSum=0.636;QD=22.89;ReadPosRankSum=0.504;SB=-4.148e+03 GT:AD:DP:GQ:PL 1/1:1,312:314:99:7189,715,0 chrXV 29825 . C T 7149.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=14.2960;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=22.13;SB=-4.027e+03 GT:AD:DP:GQ:PL 1/1:0,321:323:99:7149,736,0 chrXV 29909 . G T 7835.01 PASS AC=2;AF=1.00;AN=2;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=22.8677;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;QD=23.32;SB=-4.117e+03 GT:AD:DP:GQ:PL 1/1:0,333:336:99:7835,844,0 chrXV 29976 . G C 7108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=320;Dels=0.00;FS=23.088;HaplotypeScore=11.2435;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;MQRankSum=3.393;QD=22.21;ReadPosRankSum=1.362;SB=-3.844e+03 GT:AD:DP:GQ:PL 1/1:7,308:320:99:7108,754,0 chrXV 29984 . T A 6987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=329;Dels=0.00;FS=17.521;HaplotypeScore=8.2595;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;MQRankSum=2.390;QD=21.24;ReadPosRankSum=3.150;SB=-4.203e+03 GT:AD:DP:GQ:PL 1/1:9,320:329:99:6987,768,0 chrXV 30143 . C T 4973.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=5.9123;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=17.76;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,276:280:99:4973,514,0 chrXV 30149 . G A 4539.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=2.3218;MLEAC=2;MLEAF=1.00;MQ=33.74;MQ0=0;QD=17.32;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:4539,478,0 chrXV 30155 . G C 3934.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=200.8036;MLEAC=2;MLEAF=1.00;MQ=33.09;MQ0=0;QD=15.74;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:3934,432,0 chrXV 30161 . A C 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=203.0623;MLEAC=2;MLEAF=1.00;MQ=33.17;MQ0=0;MQRankSum=0.118;QD=15.17;ReadPosRankSum=1.643;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:3549,381,0 chrXV 30174 . C A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=31.93;MQ0=0;QD=14.72;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:3445,366,0 chrXV 30179 . C T 3514.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=32.19;MQ0=0;QD=15.41;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:3514,363,0 chrXV 30248 . G A 4762.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.16;MQ0=0;QD=22.78;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4762,502,0 chrXV 30265 . C G 5012.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=23.10;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5012,538,0 chrXV 30338 . G T 4854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.726;DP=209;Dels=0.00;FS=2.963;HaplotypeScore=25.9633;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;MQRankSum=-0.443;QD=23.22;ReadPosRankSum=1.139;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:2,206:209:99:4854,528,0 chrXV 30386 . T G 3660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.767;DP=205;Dels=0.00;FS=2.575;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;MQRankSum=-0.342;QD=17.85;ReadPosRankSum=2.837;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:3,200:205:99:3660,428,0 chrXV 30395 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.53;MQ0=0;QD=17.31;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3341,386,0 chrXV 30406 . A T 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.126;DP=207;Dels=0.00;FS=28.891;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;MQRankSum=-2.466;QD=14.30;ReadPosRankSum=4.167;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:6,201:207:99:2993,353,0 chrXV 30446 . T C 2615 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=9.6223;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;MQRankSum=-0.880;QD=10.90;ReadPosRankSum=1.718;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,239:240:99:2648,288,0 chrXV 30453 . A G 2366 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=225;Dels=0.00;FS=10.568;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;MQRankSum=-2.439;QD=10.52;ReadPosRankSum=2.428;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:2399,258,0 chrXV 30455 . A C 2289 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=222;Dels=0.00;FS=5.402;HaplotypeScore=3.4866;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;MQRankSum=1.529;QD=10.31;ReadPosRankSum=1.716;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:2322,255,0 chrXV 30457 . C A 2351 SnpCluster AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=1.9092;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=10.64;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:2384,258,0 chrXV 30459 . C T 2489 SnpCluster AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=11.26;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:2522,261,0 chrXV 30469 . T C 2401 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;MQRankSum=-1.803;QD=9.88;ReadPosRankSum=2.429;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:2,241:243:99:2434,258,0 chrXV 30473 . G C 2302 SnpCluster AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=2.6392;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=10.01;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:2335,249,0 chrXV 30475 . A G 2429 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=230;Dels=0.00;FS=5.422;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;MQRankSum=-0.437;QD=10.56;ReadPosRankSum=1.717;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:2462,258,0 chrXV 30482 . A T 2412 SnpCluster AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=10.49;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:2445,258,0 chrXV 30491 . G A 2139 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=9.55;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:2172,228,0 chrXV 30497 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=9.52;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:2109,225,0 chrXV 30503 . A G 2000 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=9.22;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:2033,225,0 chrXV 30509 . T A 2046 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=9.39;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:2079,222,0 chrXV 30535 . C T 1970 SnpCluster AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;QD=11.01;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:2003,213,0 chrXV 30539 . G T 1819 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=10.58;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:1852,213,0 chrXV 30542 . A G 1753 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=169;Dels=0.00;FS=2.831;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=0;MQRankSum=-0.996;QD=10.37;ReadPosRankSum=2.421;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:1786,204,0 chrXV 30545 . T C 1783 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.38;MQ0=0;QD=10.94;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:1816,204,0 chrXV 30548 . A T 1834 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;MQRankSum=0.962;QD=11.99;ReadPosRankSum=1.709;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:1867,207,0 chrXV 30557 . G C 1776 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=0;QD=12.51;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1809,210,0 chrXV 30560 . T A 1742 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.81;MQ0=0;QD=12.44;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1775,201,0 chrXV 30566 . G T 1633 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.57;MQ0=0;QD=12.47;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1666,189,0 chrXV 30569 . G A 1591 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=12.43;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1624,183,0 chrXV 30572 . T G 1505 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=0;QD=12.24;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1538,180,0 chrXV 30575 . G A 1340 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=26.20;MQ0=0;QD=12.52;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1373,168,0 chrXV 30577 . T G 1306 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=26.20;MQ0=0;QD=12.21;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1339,167,0 chrXV 30578 . G A 1320 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=25.92;MQ0=0;QD=11.89;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1353,168,0 chrXV 30590 . G C 1661 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=24.80;MQ0=0;QD=12.58;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1694,209,0 chrXV 30593 . T C 1744 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=137;Dels=0.00;FS=46.290;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.89;MQ0=0;MQRankSum=0.160;QD=12.73;ReadPosRankSum=3.267;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:4,133:137:99:1777,218,0 chrXV 30599 . A T 2022 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=25.04;MQ0=0;MQRankSum=-0.098;QD=14.24;ReadPosRankSum=1.659;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2055,240,0 chrXV 30614 . A G 1163.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128;DP=165;Dels=0.00;FS=16.306;HaplotypeScore=12.9797;MLEAC=1;MLEAF=0.500;MQ=26.27;MQ0=0;MQRankSum=-3.151;QD=7.05;ReadPosRankSum=0.335;SB=-1.710e+02 GT:AD:DP:GQ:PL 0/1:65,94:165:99:1193,0,939 chrXV 30635 . G A 1912.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.337;DP=229;Dels=0.00;FS=3.141;HaplotypeScore=21.4244;MLEAC=1;MLEAF=0.500;MQ=27.68;MQ0=0;MQRankSum=-1.746;QD=8.35;ReadPosRankSum=-2.628;SB=-9.460e+02 GT:AD:DP:GQ:PL 0/1:102,125:229:99:1942,0,1752 chrXV 30707 . A G 7328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=321;Dels=0.00;FS=6.058;HaplotypeScore=13.7474;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=0;MQRankSum=0.353;QD=22.83;ReadPosRankSum=2.947;SB=-4.205e+03 GT:AD:DP:GQ:PL 1/1:3,318:321:99:7328,802,0 chrXV 30737 . A G 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.197;DP=205;Dels=0.00;FS=15.004;HaplotypeScore=11.1860;MLEAC=1;MLEAF=0.500;MQ=29.56;MQ0=0;MQRankSum=0.603;QD=0.14;ReadPosRankSum=-4.560;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:180,25:205:58:58,0,3220 chrXV 30806 . A G 40.97 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.55;MQ0=0;QD=2.73;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:73,9,0 chrXV 30808 . C T 46.97 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.55;MQ0=0;QD=3.13;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:79,9,0 chrXV 30884 . G A 282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.757;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=0;MQRankSum=2.530;QD=5.22;ReadPosRankSum=2.870;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:3,51:54:33:315,33,0 chrXV 30899 . T A 285 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.15;MQ0=0;QD=6.20;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:33:318,33,0 chrXV 30903 . A G 271 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.25;MQ0=0;QD=6.16;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:33:304,33,0 chrXV 30947 . T A 222.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.198;DP=179;Dels=0.00;FS=45.524;HaplotypeScore=205.4405;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=1;MQRankSum=2.014;QD=1.24;ReadPosRankSum=0.556;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:48,131:179:3:252,3,0 chrXV 30952 . C A 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.692;DP=224;Dels=0.00;FS=29.037;HaplotypeScore=147.8519;MLEAC=1;MLEAF=0.500;MQ=26.20;MQ0=1;MQRankSum=3.914;QD=0.15;ReadPosRankSum=-0.116;SB=-6.280e+02 GT:AD:DP:GQ:PL 0/1:138,86:224:64:64,0,473 chrXV 30955 . A T 16.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;DP=250;Dels=0.00;FS=30.591;HaplotypeScore=206.1194;MLEAC=1;MLEAF=0.500;MQ=26.46;MQ0=1;MQRankSum=0.947;QD=0.06;ReadPosRankSum=1.748;SB=-6.260e+02 GT:AD:DP:GQ:PL 0/1:159,91:250:46:46,0,586 chrXV 30958 . A T 579.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;DP=270;Dels=0.00;FS=31.658;HaplotypeScore=141.2209;MLEAC=1;MLEAF=0.500;MQ=26.92;MQ0=1;MQRankSum=0.607;QD=2.14;ReadPosRankSum=0.346;SB=-4.610e+02 GT:AD:DP:GQ:PL 0/1:111,159:270:99:609,0,151 chrXV 30965 . G A 606.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=12.735;DP=338;Dels=0.00;FS=101.201;HaplotypeScore=318.2233;MLEAC=1;MLEAF=0.500;MQ=27.29;MQ0=1;MQRankSum=2.431;QD=1.79;ReadPosRankSum=7.149;SB=-1.401e+03 GT:AD:DP:GQ:PL 0/1:186,152:338:99:636,0,218 chrXV 30986 . T A 852 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.273;DP=389;Dels=0.01;FS=20.168;HaplotypeScore=1164.0362;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=2;MQRankSum=0.513;QD=2.19;ReadPosRankSum=-0.371;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:171,216:387:99:885,102,0 chrXV 30992 . A G 480.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.574;DP=401;Dels=0.04;FS=3.778;HaplotypeScore=958.5114;MLEAC=1;MLEAF=0.500;MQ=28.04;MQ0=3;MQRankSum=0.347;QD=1.20;ReadPosRankSum=-5.755;SB=-1.081e+03 GT:AD:DP:GQ:PL 0/1:205,178:383:99:510,0,810 chrXV 30997 . A T 1361.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;DP=410;Dels=0.04;FS=1.022;HaplotypeScore=671.6960;MLEAC=1;MLEAF=0.500;MQ=28.08;MQ0=3;MQRankSum=2.054;QD=3.32;ReadPosRankSum=3.991;SB=-1.801e+03 GT:AD:DP:GQ:PL 0/1:93,298:392:26:1391,0,26 chrXV 31025 . T A 2635 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.516;DP=339;Dels=0.00;FS=11.979;HaplotypeScore=333.0523;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=5;MQRankSum=-1.474;QD=7.77;ReadPosRankSum=3.125;SB=-2.944e+03 GT:AD:DP:GQ:PL 1/1:40,299:339:99:2668,311,0 chrXV 31030 . C A 95.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.115;DP=369;Dels=0.01;FS=93.436;HaplotypeScore=307.3261;MLEAC=1;MLEAF=0.500;MQ=28.48;MQ0=5;MQRankSum=2.728;QD=0.26;ReadPosRankSum=-4.805;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:306,59:367:99:125,0,2478 chrXV 31033 . A T 227.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.583;DP=394;Dels=0.01;FS=45.543;HaplotypeScore=307.7888;MLEAC=1;MLEAF=0.500;MQ=28.43;MQ0=6;MQRankSum=4.043;QD=0.58;ReadPosRankSum=-4.944;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:317,74:392:99:257,0,2905 chrXV 31036 . A T 3066.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.043;DP=412;Dels=0.00;FS=47.991;HaplotypeScore=257.6036;MLEAC=1;MLEAF=0.500;MQ=28.48;MQ0=6;MQRankSum=-1.514;QD=7.44;ReadPosRankSum=6.736;SB=-2.659e+03 GT:AD:DP:GQ:PL 0/1:99,308:410:99:3096,0,497 chrXV 31049 . G T 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.731;DP=508;Dels=0.00;FS=140.679;HaplotypeScore=200.0991;MLEAC=1;MLEAF=0.500;MQ=28.81;MQ0=7;MQRankSum=0.174;QD=0.10;ReadPosRankSum=-3.405;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:444,64:508:80:80,0,5369 chrXV 31075 . A T 11607.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.587;DP=612;Dels=0.00;FS=5.601;HaplotypeScore=73.2864;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=8;MQRankSum=-1.483;QD=18.97;ReadPosRankSum=5.505;SB=-6.454e+03 GT:AD:DP:GQ:PL 1/1:13,595:612:99:11607,1252,0 chrXV 31086 . G A 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.570;DP=707;Dels=0.00;FS=21.379;HaplotypeScore=55.7235;MLEAC=1;MLEAF=0.500;MQ=30.06;MQ0=4;MQRankSum=-6.274;QD=0.03;ReadPosRankSum=6.749;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:602,96:707:54:54,0,10475 chrXV 31184 . G A 228.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.051;DP=285;Dels=0.00;FS=51.655;HaplotypeScore=211.8288;MLEAC=1;MLEAF=0.500;MQ=27.82;MQ0=0;MQRankSum=3.522;QD=0.80;ReadPosRankSum=-7.683;SB=-2.290e+02 GT:AD:DP:GQ:PL 0/1:203,82:285:99:258,0,1418 chrXV 31188 . A G 280.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.243;DP=256;Dels=0.02;FS=6.898;HaplotypeScore=73.4175;MLEAC=1;MLEAF=0.500;MQ=27.09;MQ0=0;MQRankSum=2.627;QD=1.09;ReadPosRankSum=1.049;SB=-2.350e+02 GT:AD:DP:GQ:PL 0/1:144,106:252:99:310,0,881 chrXV 31190 . T G 248.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.022;DP=241;Dels=0.02;FS=1.286;HaplotypeScore=187.2641;MLEAC=1;MLEAF=0.500;MQ=26.41;MQ0=0;MQRankSum=3.459;QD=1.03;ReadPosRankSum=1.575;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:141,93:237:99:278,0,996 chrXV 31211 . G A 421.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=11.801;DP=277;Dels=0.00;FS=6.905;HaplotypeScore=460.1795;MLEAC=1;MLEAF=0.500;MQ=25.65;MQ0=2;MQRankSum=-1.633;QD=1.52;ReadPosRankSum=-0.920;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:134,143:277:99:451,0,920 chrXV 31214 . G A 1738 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=274;Dels=0.02;FS=0.000;HaplotypeScore=362.3590;MLEAC=2;MLEAF=1.00;MQ=25.66;MQ0=2;MQRankSum=0.674;QD=6.34;ReadPosRankSum=4.061;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:6,262:268:99:1771,178,0 chrXV 31216 . A T 1738 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.173;DP=287;Dels=0.02;FS=0.000;HaplotypeScore=243.2333;MLEAC=2;MLEAF=1.00;MQ=25.74;MQ0=2;MQRankSum=-0.378;QD=6.06;ReadPosRankSum=5.144;SB=-8.900e+01 GT:AD:DP:GQ:PL 1/1:41,240:281:99:1771,176,0 chrXV 31223 . G A 835.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.071;DP=263;Dels=0.02;FS=2.237;HaplotypeScore=266.7775;MLEAC=1;MLEAF=0.500;MQ=25.84;MQ0=2;MQRankSum=4.570;QD=3.17;ReadPosRankSum=-1.828;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:139,118:257:99:865,0,317 chrXV 31360 . G A 34.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.587;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=2.003;QD=0.67;ReadPosRankSum=3.640;SB=-6.097e-02 GT:AD:DP:GQ:PL 0/1:6,45:51:15:64,0,15 chrXV 31367 . G A 80.51 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.49;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,54:54:12:113,12,0 chrXV 31376 . G A 56.97 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.06;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,54:54:9:89,9,0 chrXV 31379 . T A 53.97 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.00;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,54:54:9:86,9,0 chrXV 31388 . G A 48.97 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.73;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,67:67:9:81,9,0 chrXV 31394 . C G 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.01;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,76:76:12:109,12,0 chrXV 31400 . C T 107.26 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.23;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,87:87:15:140,15,0 chrXV 31402 . C G 228 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.62;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,87:87:30:261,30,0 chrXV 31412 . G A 319 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.32;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,96:96:36:352,36,0 chrXV 31418 . G A 316 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.10;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,102:102:36:349,36,0 chrXV 31424 . A G 370 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.30;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:45:403,45,0 chrXV 31426 . A G 400 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.65;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:45:433,45,0 chrXV 31427 . A G 399 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.64;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:45:432,45,0 chrXV 31430 . A T 359 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.86;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:45:392,45,0 chrXV 31436 . G A 419 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=88.5046;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.28;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,98:98:45:452,45,0 chrXV 31440 . A G 434 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=90.4962;MLEAC=2;MLEAF=1.00;MQ=29.19;MQ0=0;QD=4.43;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,98:98:54:467,54,0 chrXV 31466 . G A 1174 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=8.76;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1207,126,0 chrXV 31482 . G A 1487 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.95;MQ0=0;QD=9.91;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:1520,162,0 chrXV 31493 . G A 1858 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.08;MQ0=0;QD=12.55;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:1891,198,0 chrXV 31610 . T C 5560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=38.18;MQ0=0;MQRankSum=-0.975;QD=23.26;ReadPosRankSum=1.718;SB=-3.072e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:5560,598,0 chrXV 31639 . T G 6154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=10.9467;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;MQRankSum=-1.649;QD=24.32;ReadPosRankSum=1.718;SB=-3.188e+03 GT:AD:DP:GQ:PL 1/1:1,250:253:99:6154,655,0 chrXV 31697 . T C 6229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=19.6947;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;MQRankSum=-0.522;QD=24.52;ReadPosRankSum=1.718;SB=-3.314e+03 GT:AD:DP:GQ:PL 1/1:1,251:254:99:6229,664,0 chrXV 31776 . A G 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=0;MQRankSum=-1.709;QD=19.90;ReadPosRankSum=1.709;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2978,327,0 chrXV 31789 . G A 2588 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.83;MQ0=0;QD=18.23;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2621,285,0 chrXV 31790 . T A 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.262;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.54;MQ0=0;MQRankSum=-0.781;QD=18.22;ReadPosRankSum=1.683;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2620,285,0 chrXV 31801 . C T 2512 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;QD=15.22;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2545,270,0 chrXV 31814 . A C 2164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;MQRankSum=1.016;QD=12.73;ReadPosRankSum=2.274;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:2197,240,0 chrXV 31817 . C A 2479 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=41.80;MQ0=0;QD=13.85;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:2512,264,0 chrXV 31883 . G A 4072.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.46;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4072,429,0 chrXV 31939 . C T 4055.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;QD=22.65;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4055,429,0 chrXV 31946 . C T 3812.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.7111;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=21.30;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3812,417,0 chrXV 31959 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.9162;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=20.34;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3518,381,0 chrXV 31977 . A G 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=159;Dels=0.00;FS=6.215;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;MQRankSum=-1.028;QD=17.54;ReadPosRankSum=2.419;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:2822,315,0 chrXV 32012 . G A 1843 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=112.8263;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=0;QD=13.55;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:1876,204,0 chrXV 32149 . T C 4105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;MQRankSum=0.135;QD=24.58;ReadPosRankSum=1.691;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4105,441,0 chrXV 32177 . G C 3448.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=41.95;MQ0=0;QD=23.62;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3448,378,0 chrXV 32330 . G A 3956.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.4924;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=22.74;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3956,409,0 chrXV 32374 . A G 1984 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.75;MQ0=0;QD=16.67;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2017,219,0 chrXV 32379 . C T 1945 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=0;QD=16.21;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1978,204,0 chrXV 32386 . C A 2047 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=97.0071;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=16.25;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2080,219,0 chrXV 32395 . A G 1676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=2.916;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;MQRankSum=-0.986;QD=13.85;ReadPosRankSum=2.409;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:1709,186,0 chrXV 32397 . C T 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;QD=0.20;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,6:124:6:56,6,0 chrXV 32720 . C G 3321.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.71;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3321,351,0 chrXV 32791 . A G 2059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=137;Dels=0.00;FS=7.510;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=32.90;MQ0=0;MQRankSum=-2.163;QD=15.03;ReadPosRankSum=2.414;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2092,219,0 chrXV 32803 . T C 2176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=154;Dels=0.00;FS=5.431;HaplotypeScore=3.2806;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;MQRankSum=-0.575;QD=14.13;ReadPosRankSum=2.955;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:2209,240,0 chrXV 32809 . C T 2259 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=143.3909;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=0;QD=14.39;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2292,243,0 chrXV 32838 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;QD=14.65;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2582,273,0 chrXV 32855 . A G 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=173;Dels=0.00;FS=11.475;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=40.25;MQ0=0;MQRankSum=1.200;QD=13.53;ReadPosRankSum=2.392;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:2,169:173:99:2374,252,0 chrXV 32865 . C T 2533 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;QD=15.08;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2566,267,0 chrXV 33217 . A C 4581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.7934;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.299;QD=23.86;ReadPosRankSum=1.714;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4581,481,0 chrXV 33489 . C T 5345.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.34;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5345,553,0 chrXV 33511 . C G 5834.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.01;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5834,619,0 chrXV 33546 . T C 5626.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.87;SB=-3.271e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5626,601,0 chrXV 33670 . A C 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=171;Dels=0.00;FS=2.604;HaplotypeScore=4.4308;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.136;QD=19.92;ReadPosRankSum=2.062;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3406,363,0 chrXV 33671 . T A 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.4308;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=0.760;QD=19.86;ReadPosRankSum=2.109;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3435,360,0 chrXV 34103 . C G 2704 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=20.48;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2737,288,0 chrXV 34108 . G C 2586 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=19.74;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2619,276,0 chrXV 34340 . T C 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.850;DP=158;Dels=0.00;FS=6.401;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=5.227;QD=0.09;ReadPosRankSum=3.491;SB=-8.438e+02 GT:AD:DP:GQ:PL 1/1:51,106:158:6:45,6,0 chrXV 34772 . C T 5370.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.1074;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.52;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5370,571,0 chrXV 34951 . T C 5867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=262;Dels=0.00;FS=6.207;HaplotypeScore=19.1412;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.142;QD=22.39;ReadPosRankSum=2.431;SB=-3.275e+03 GT:AD:DP:GQ:PL 1/1:2,257:262:99:5867,648,0 chrXV 35297 . A G 4493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.902;DP=210;Dels=0.00;FS=7.381;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.699;QD=21.40;ReadPosRankSum=4.121;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:6,204:210:99:4493,486,0 chrXV 35401 . C A 4817.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.9337;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.03;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4817,499,0 chrXV 35414 . C T 4341.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.48;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4341,459,0 chrXV 35486 . A T 2945 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2187;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.94;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2978,306,0 chrXV 35544 . G T 2611 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=24.63;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2644,279,0 chrXV 35596 . A T 2290 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.61;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2323,240,0 chrXV 35666 . A G 1855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=0.655;QD=25.07;ReadPosRankSum=1.685;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1888,201,0 chrXV 35718 . T C 1707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.846;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=0.000;QD=21.07;ReadPosRankSum=1.689;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1740,183,0 chrXV 35742 . G C 2047 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=20.89;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2080,222,0 chrXV 35747 . G T 2059 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=20.80;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2092,225,0 chrXV 35779 . T C 1943 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.24;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1976,207,0 chrXV 35788 . T A 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-0.839;QD=20.13;ReadPosRankSum=1.696;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1986,201,0 chrXV 35855 . T C 1269 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.66;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1302,141,0 chrXV 35866 . A C 1499 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=18.97;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1532,165,0 chrXV 35915 . T C 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.4848;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-1.393;QD=20.52;ReadPosRankSum=1.694;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1921,207,0 chrXV 36047 . A G 2389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-1.109;QD=23.89;ReadPosRankSum=1.628;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2422,261,0 chrXV 36091 . C G 2494 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.88;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2527,270,0 chrXV 36403 . A G 2232 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.10;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2265,240,0 chrXV 36415 . C T 2311 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.01;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2344,243,0 chrXV 36550 . C G 1508 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=18.39;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1541,165,0 chrXV 36551 . G A 1564 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.84;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1597,165,0 chrXV 36606 . T G 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.924;QD=20.74;ReadPosRankSum=1.703;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2543,276,0 chrXV 36648 . G C 3133 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.21;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3166,348,0 chrXV 36760 . C T 2538 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=24.40;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2571,270,0 chrXV 36786 . T G 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.4673;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-1.547;QD=20.57;ReadPosRankSum=1.701;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2357,255,0 chrXV 37042 . T G 4125.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=23.17;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4125,433,0 chrXV 37059 . A G 3779.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.23;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3779,411,0 chrXV 37107 . C T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.5660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.45;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3367,346,0 chrXV 37205 . T C 5507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=229;Dels=0.00;FS=5.392;HaplotypeScore=19.6076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.229;QD=24.05;ReadPosRankSum=2.943;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:3,225:229:99:5507,583,0 chrXV 37274 . A C 6932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=283;Dels=0.00;FS=5.410;HaplotypeScore=19.4434;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.349;QD=24.49;ReadPosRankSum=1.720;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:1,277:283:99:6932,727,0 chrXV 37458 . A G 7980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=345;Dels=0.00;FS=5.940;HaplotypeScore=16.7438;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.660;QD=23.13;ReadPosRankSum=2.904;SB=-4.031e+03 GT:AD:DP:GQ:PL 1/1:3,342:345:99:7980,871,0 chrXV 37620 . G C 5814.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=24.2653;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.78;SB=-3.238e+03 GT:AD:DP:GQ:PL 1/1:0,264:267:99:5814,633,0 chrXV 37725 . G A 4041.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.0311;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.62;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4041,421,0 chrXV 37742 . G A 3680.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=18.97;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3680,379,0 chrXV 37749 . A G 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=184;Dels=0.00;FS=5.726;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-0.236;QD=17.50;ReadPosRankSum=2.830;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:3253,357,0 chrXV 37812 . C T 3897.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.7856;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.29;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:3897,414,0 chrXV 37922 . A T 4524.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.45;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4524,469,0 chrXV 38001 . C G 3870.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=23.04;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3870,411,0 chrXV 38127 . G A 3916.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.51;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3916,409,0 chrXV 38177 . A C 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.303;QD=21.91;ReadPosRankSum=1.710;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3505,378,0 chrXV 38224 . T G 3284.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3284,345,0 chrXV 38675 . T C 2563 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.95;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2596,273,0 chrXV 38726 . T G 2452 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.58;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2485,267,0 chrXV 38741 . A C 2277 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.54;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2310,249,0 chrXV 38791 . A C 1881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.156;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.704;QD=20.67;ReadPosRankSum=1.694;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1914,207,0 chrXV 38812 . A G 1819 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.77;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1852,195,0 chrXV 38827 . G A 2094 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.04;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2127,222,0 chrXV 38891 . G A 2431 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.51;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2464,264,0 chrXV 39064 . A G 5221.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=26.11;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:5221,553,0 chrXV 39352 . T G 3328.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=20.54;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3328,393,0 chrXV 39353 . G A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;QD=20.98;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3294,390,0 chrXV 39380 . C T 1932 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.28;MQ0=0;QD=18.06;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1965,216,0 chrXV 39382 . G A 1866 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=0;QD=17.77;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1899,201,0 chrXV 39402 . G C 1479 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=0;QD=13.57;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1512,162,0 chrXV 39403 . T C 1484 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=27.59;MQ0=0;QD=13.37;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1517,162,0 chrXV 39405 . T A 1504 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.249;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;MQRankSum=0.773;QD=13.31;ReadPosRankSum=1.701;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:1537,168,0 chrXV 39407 . T C 1496 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=3.241;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;MQRankSum=-0.269;QD=12.90;ReadPosRankSum=1.702;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1529,174,0 chrXV 39416 . A G 1674 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.81;MQ0=0;QD=12.98;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1707,192,0 chrXV 39418 . G C 1728 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.21;MQ0=0;QD=12.90;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:1761,192,0 chrXV 39421 . A G 1726 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=35.01;MQ0=0;QD=12.15;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:1759,195,0 chrXV 39499 . A T 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.134;DP=140;Dels=0.00;FS=3.027;HaplotypeScore=7.3908;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-1.098;QD=23.99;ReadPosRankSum=2.309;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3359,351,0 chrXV 39574 . T C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=142;Dels=0.00;FS=2.748;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=0.567;QD=23.45;ReadPosRankSum=2.415;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3330,360,0 chrXV 39595 . A G 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=4.082;HaplotypeScore=2.5338;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;MQRankSum=-0.514;QD=19.81;ReadPosRankSum=1.705;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2608,297,0 chrXV 39607 . A C 2187 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=17.22;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2220,258,0 chrXV 39625 . T C 2310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=3.045;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;MQRankSum=-2.101;QD=18.05;ReadPosRankSum=2.411;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2343,267,0 chrXV 39657 . C T 2031 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;QD=16.79;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2064,225,0 chrXV 39668 . C G 2100 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=16.54;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2133,240,0 chrXV 39768 . C T 4116.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.9103;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.36;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4116,438,0 chrXV 39805 . C T 4298.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=24.56;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4298,451,0 chrXV 39855 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.712;DP=143;Dels=0.00;FS=5.833;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.401;QD=24.17;ReadPosRankSum=2.895;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:3456,369,0 chrXV 39893 . G A 3351.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.6979;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=23.77;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3351,360,0 chrXV 40198 . A G 5279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.781;QD=24.55;ReadPosRankSum=1.716;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:5279,556,0 chrXV 40227 . G A 4774.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.36;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4774,496,0 chrXV 40304 . T C 4305.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.5743;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.27;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4305,462,0 chrXV 40440 . C T 4097.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.39;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:4097,427,0 chrXV 40513 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.7235;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3269,345,0 chrXV 40593 . A G 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.497;QD=22.29;ReadPosRankSum=1.672;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2596,276,0 chrXV 40684 . C A 2263 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2296,234,0 chrXV 40848 . C T 2281 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=27.15;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2314,243,0 chrXV 41050 . A G 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.668;DP=145;Dels=0.00;FS=18.505;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.396;QD=23.22;ReadPosRankSum=3.744;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:5,140:145:99:3367,354,0 chrXV 41257 . G C 5164.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.16;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5164,553,0 chrXV 41308 . G T 5392.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.5290;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.85;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5392,556,0 chrXV 41470 . T C 4716.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.63;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4716,516,0 chrXV 41495 . C T 4369.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.0546;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.29;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,192:196:99:4369,448,0 chrXV 41788 . A T 4255.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.28;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4255,456,0 chrXV 41838 . G A 4083.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.31;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4083,418,0 chrXV 41843 . A C 4102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.885;QD=22.29;ReadPosRankSum=1.713;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4102,435,0 chrXV 42175 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.2140;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.19;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3339,357,0 chrXV 42219 . A C 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=3.182;HaplotypeScore=7.9092;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.551;QD=24.12;ReadPosRankSum=1.705;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3144,336,0 chrXV 42290 . A G 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.891;QD=20.74;ReadPosRankSum=1.707;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2936,312,0 chrXV 42291 . T C 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=143;Dels=0.00;FS=6.629;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.375;QD=20.61;ReadPosRankSum=2.310;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:2980,315,0 chrXV 42372 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.3451;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.64;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3109,327,0 chrXV 42529 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.0279;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=24.68;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3268,342,0 chrXV 42832 . A G 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=3.540;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;MQRankSum=-1.524;QD=24.48;ReadPosRankSum=1.713;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4480,472,0 chrXV 42859 . A G 4516.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.9261;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=25.23;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4516,472,0 chrXV 42969 . C T 3846.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.95;MQ0=0;QD=23.31;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3846,405,0 chrXV 43092 . A G 749 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;QD=9.36;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:84:782,84,0 chrXV 43143 . A G 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;MQRankSum=-1.690;QD=22.47;ReadPosRankSum=1.690;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1898,204,0 chrXV 43153 . A G 1994 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=84.0862;MLEAC=2;MLEAF=1.00;MQ=29.31;MQ0=0;MQRankSum=-1.732;QD=21.91;ReadPosRankSum=1.694;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2027,213,0 chrXV 43170 . T C 1825 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=19.21;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1858,198,0 chrXV 43176 . A C 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=0;MQRankSum=-1.309;QD=18.58;ReadPosRankSum=1.694;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1705,177,0 chrXV 43187 . A G 1420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;MQRankSum=-0.104;QD=17.11;ReadPosRankSum=1.690;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1453,159,0 chrXV 43188 . A G 1452 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=17.29;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1485,162,0 chrXV 43223 . G A 1298 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.75;MQ0=0;QD=17.54;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1331,141,0 chrXV 43312 . G A 827 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=9.379;HaplotypeScore=3.2460;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;MQRankSum=-0.999;QD=15.90;ReadPosRankSum=1.466;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:1,51:52:99:860,105,0 chrXV 43313 . A G 829 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;DP=52;Dels=0.00;FS=19.465;HaplotypeScore=3.2460;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;MQRankSum=0.262;QD=15.94;ReadPosRankSum=2.260;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:2,50:52:99:862,105,0 chrXV 43318 . A G 998 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=19.57;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1031,114,0 chrXV 43337 . C T 641 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.83;MQ0=0;QD=13.93;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:75:674,75,0 chrXV 43351 . C T 210.01 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=7.50;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:27:243,27,0 chrXV 43360 . A G 161.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=14.472;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;MQRankSum=1.609;QD=5.75;ReadPosRankSum=1.609;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,27:28:21:194,21,0 chrXV 43366 . A G 196.01 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=7.26;SB=-4.302e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:27:229,27,0 chrXV 43374 . A G 189.01 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=8.59;SB=-6.502e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:27:222,27,0 chrXV 43376 . T C 200.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;MQRankSum=-0.226;QD=8.70;ReadPosRankSum=1.583;SB=-6.502e+01 GT:AD:DP:GQ:PL 1/1:1,22:23:27:233,27,0 chrXV 43415 . A G 1097 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.77;MQ0=0;QD=21.10;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1130,123,0 chrXV 43444 . T C 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.55;MQ0=0;MQRankSum=-0.433;QD=23.61;ReadPosRankSum=1.678;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1544,165,0 chrXV 43479 . A T 1932 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=79.2153;MLEAC=2;MLEAF=1.00;MQ=37.40;MQ0=0;QD=20.55;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1965,210,0 chrXV 43511 . A G 2212 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=7.3991;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=16.76;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2245,249,0 chrXV 43599 . C T 1474 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=15.52;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1507,159,0 chrXV 43623 . T C 879 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=0;QD=10.46;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:912,105,0 chrXV 43625 . T C 818 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=0;QD=10.10;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:851,99,0 chrXV 43626 . C T 829 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=0;QD=10.23;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:862,99,0 chrXV 43628 . C G 843 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=0;QD=10.41;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:876,99,0 chrXV 43648 . G A 1126 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.57;MQ0=0;QD=10.52;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1159,129,0 chrXV 43650 . A T 1123 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.57;MQ0=0;QD=10.50;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1156,126,0 chrXV 43663 . A G 1079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=4.554;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=0;MQRankSum=-1.110;QD=9.14;ReadPosRankSum=1.703;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:1112,129,0 chrXV 43666 . C A 1118 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;QD=8.94;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:1151,126,0 chrXV 43688 . G T 1803 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;QD=12.52;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:1836,198,0 chrXV 43705 . C T 2363 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=41.45;MQ0=0;QD=14.50;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2396,255,0 chrXV 43753 . G A 4166.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=21.36;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4166,444,0 chrXV 43786 . C T 4102.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=25.32;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4102,435,0 chrXV 43834 . C T 2533 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.9136;MLEAC=2;MLEAF=1.00;MQ=38.71;MQ0=0;QD=17.35;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2566,299,0 chrXV 43840 . A C 2509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=3.424;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.84;MQ0=0;MQRankSum=-1.030;QD=17.55;ReadPosRankSum=1.708;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2542,302,0 chrXV 43853 . G A 2477 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=32.98;MQ0=0;QD=16.51;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2510,293,0 chrXV 43873 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=35.11;MQ0=0;QD=16.40;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2689,311,0 chrXV 43915 . T G 3213.98 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.1385;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;QD=19.84;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3247,348,0 chrXV 44065 . C G 3324.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.7564;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=21.17;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3324,363,0 chrXV 44092 . T C 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=152;Dels=0.00;FS=3.039;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;MQRankSum=-0.356;QD=19.80;ReadPosRankSum=1.709;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3042,324,0 chrXV 44113 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8501;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=20.99;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3181,330,0 chrXV 44149 . T A 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=-0.445;QD=18.45;ReadPosRankSum=1.683;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2616,273,0 chrXV 44176 . A G 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=4.013;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=-0.965;QD=19.14;ReadPosRankSum=1.653;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2540,270,0 chrXV 44181 . A G 2485 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=18.68;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2518,267,0 chrXV 44249 . T G 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=146;Dels=0.00;FS=2.791;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.398;QD=22.67;ReadPosRankSum=2.416;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3310,366,0 chrXV 44385 . A G 5772.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=24.15;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5772,607,0 chrXV 44491 . G A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.64;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4160,433,0 chrXV 44548 . T C 4014.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,163:166:99:4014,421,0 chrXV 44724 . C T 586 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.90;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,30:31:63:619,63,0 chrXV 44787 . A G 1410 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.38;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1443,153,0 chrXV 44801 . C T 1542 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.77;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1575,162,0 chrXV 44819 . A G 2095 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.95;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2128,231,0 chrXV 45210 . A G 3379.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3379,381,0 chrXV 45492 . G A 1576 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.6159;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.18;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1609,165,0 chrXV 46201 . T A 5898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-1.624;QD=19.47;ReadPosRankSum=2.393;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:2,301:303:99:5898,619,0 chrXV 46204 . C T 5669.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=3.1180;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.02;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,298:298:99:5669,589,0 chrXV 46225 . G A 4729.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=13.9034;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=16.48;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,281:287:99:4729,510,0 chrXV 46849 . A G 4954.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=14.2860;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.54;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4954,529,0 chrXV 46903 . G A 4821.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.0562;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.52;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4821,525,0 chrXV 46963 . G A 3733.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.5244;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.76;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3733,390,0 chrXV 47272 . C T 4733.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4733,496,0 chrXV 47332 . T C 5478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.6467;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.731;QD=24.24;ReadPosRankSum=1.717;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:5478,586,0 chrXV 47652 . A C 5014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.214;DP=226;Dels=0.00;FS=8.514;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-1.061;QD=22.19;ReadPosRankSum=3.406;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:4,222:226:99:5014,538,0 chrXV 47662 . G T 4945.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.1240;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.27;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4945,508,0 chrXV 47740 . G A 3176 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=19.60;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3209,333,0 chrXV 47758 . A G 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=0.273;QD=21.70;ReadPosRankSum=1.664;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3298,348,0 chrXV 47785 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=20.47;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3021,318,0 chrXV 47793 . A G 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.036;QD=18.63;ReadPosRankSum=1.684;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2734,291,0 chrXV 48065 . T A 5499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=211;Dels=0.00;FS=2.563;HaplotypeScore=16.0217;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.271;QD=26.06;ReadPosRankSum=2.967;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:3,208:211:99:5499,559,0 chrXV 48109 . G A 5535.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.07;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5535,574,0 chrXV 48344 . A C 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.035;DP=178;Dels=0.00;FS=2.736;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.173;QD=22.44;ReadPosRankSum=2.089;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3995,421,0 chrXV 48404 . G T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.42;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4005,418,0 chrXV 48470 . G C 2785 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.64;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2818,303,0 chrXV 48685 . A G 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=3.639;HaplotypeScore=3.5495;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-0.602;QD=22.39;ReadPosRankSum=1.683;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3190,336,0 chrXV 48688 . G T 3204.99 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.2355;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=22.26;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3238,339,0 chrXV 48997 . G A 3209 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=24.4332;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.39;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,117:150:99:3242,331,0 chrXV 49109 . G C 4083.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.83;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:4083,444,0 chrXV 49259 . C T 4084.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.88;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4084,424,0 chrXV 49316 . C T 3000 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.90;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3033,318,0 chrXV 49373 . A G 2468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7949;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.740;QD=20.57;ReadPosRankSum=2.942;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2501,270,0 chrXV 49403 . T G 2560 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.33;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2593,282,0 chrXV 49477 . A G 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.111;DP=107;Dels=0.00;FS=3.177;HaplotypeScore=13.2968;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.699;QD=21.74;ReadPosRankSum=-0.588;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2359,255,0 chrXV 50002 . C T 3772.01 SnpCluster AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=21.19;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3772,388,0 chrXV 50010 . A T 3564.01 SnpCluster AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=19.16;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3564,369,0 chrXV 50012 . C T 3565.01 SnpCluster AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=18.47;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3565,370,0 chrXV 50220 . A G 2554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.738;DP=142;Dels=0.00;FS=5.622;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=-0.553;QD=17.99;ReadPosRankSum=2.880;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:2587,288,0 chrXV 50224 . T C 2627 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=18.12;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2660,279,0 chrXV 50257 . T C 3807.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=21.27;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3807,399,0 chrXV 50638 . A G 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.642;QD=22.01;ReadPosRankSum=1.702;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2564,270,0 chrXV 50721 . C T 2662 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2695,273,0 chrXV 50942 . C G 3526.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3526,375,0 chrXV 51031 . T C 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.128;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.617;QD=24.26;ReadPosRankSum=1.709;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3639,390,0 chrXV 51148 . T A 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=3.536;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.895;QD=23.52;ReadPosRankSum=1.709;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3504,375,0 chrXV 51298 . C T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.75;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3759,382,0 chrXV 51432 . G A 2834 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.86;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2867,294,0 chrXV 51466 . A G 2691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.718;DP=119;Dels=0.00;FS=6.099;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=1.180;QD=22.61;ReadPosRankSum=2.924;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2724,291,0 chrXV 51697 . A G 4188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=169;Dels=0.00;FS=7.517;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.534;QD=24.78;ReadPosRankSum=2.376;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:4188,439,0 chrXV 51718 . T C 3872.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.47;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3872,423,0 chrXV 52021 . A G 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3371;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.450;QD=20.89;ReadPosRankSum=1.705;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2707,288,0 chrXV 52036 . A G 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=117;Dels=0.00;FS=2.880;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-1.356;QD=19.67;ReadPosRankSum=2.408;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2334,258,0 chrXV 52057 . G A 2359 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=19.99;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2392,249,0 chrXV 52306 . G A 4454.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=25.16;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4454,469,0 chrXV 52333 . A G 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=4.935;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.561;QD=24.48;ReadPosRankSum=1.711;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3965,420,0 chrXV 52372 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.27;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3269,351,0 chrXV 52465 . T C 3998.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.4618;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.09;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3998,415,0 chrXV 52540 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.6313;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.83;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4060,435,0 chrXV 52864 . A C 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.4486;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.648;QD=24.85;ReadPosRankSum=2.415;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3504,372,0 chrXV 53014 . C T 2344 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.92;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2377,255,0 chrXV 53115 . A G 2346 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.50;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2379,252,0 chrXV 53263 . G A 2773 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.92;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2806,297,0 chrXV 53283 . A G 2825 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.16;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2858,303,0 chrXV 53357 . G C 3701.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.51;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3701,390,0 chrXV 53391 . A G 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=149;Dels=0.00;FS=3.038;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.142;QD=23.19;ReadPosRankSum=2.399;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:3456,349,0 chrXV 53718 . T C 4590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=1.695;QD=24.16;ReadPosRankSum=1.695;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4590,492,0 chrXV 53742 . G A 4365.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=24.52;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4365,451,0 chrXV 53781 . C T 3679.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=23.89;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3679,387,0 chrXV 53853 . C T 4575.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=17.7932;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.99;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4575,478,0 chrXV 53997 . T A 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.004;DP=147;Dels=0.01;FS=2.827;HaplotypeScore=53.0192;MLEAC=1;MLEAF=0.500;MQ=38.65;MQ0=0;MQRankSum=4.776;QD=0.25;ReadPosRankSum=-5.257;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:136,10:146:67:67,0,271 chrXV 54004 . A G 724 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=37.48;MQ0=0;QD=5.13;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:81:757,81,0 chrXV 54505 . T C 2181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=4.815;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=0.831;QD=21.59;ReadPosRankSum=1.663;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2214,234,0 chrXV 54522 . G A 2084 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=21.48;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2117,216,0 chrXV 54757 . T C 3088 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=20.86;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3121,330,0 chrXV 54770 . T C 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=166;Dels=0.00;FS=3.031;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=1.014;QD=21.75;ReadPosRankSum=2.346;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3611,378,0 chrXV 54952 . A C 4891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.366;DP=205;Dels=0.00;FS=13.698;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;MQRankSum=-1.119;QD=23.86;ReadPosRankSum=3.383;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:4,201:205:99:4891,522,0 chrXV 54970 . G A 4634.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=23.17;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4634,484,0 chrXV 54979 . T C 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;MQRankSum=-0.333;QD=21.03;ReadPosRankSum=1.632;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4374,468,0 chrXV 54997 . C T 4254.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=20.26;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4254,459,0 chrXV 55275 . C T 2865 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=21.38;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2898,297,0 chrXV 55310 . C T 1230 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=12.18;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1263,132,0 chrXV 55311 . C T 1176 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;QD=11.88;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1209,126,0 chrXV 55328 . C T 795 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;QD=8.74;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:87:828,87,0 chrXV 55330 . T C 765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;MQRankSum=-0.923;QD=8.32;ReadPosRankSum=2.924;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:3,89:92:84:798,84,0 chrXV 55349 . T C 778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;MQRankSum=-1.701;QD=6.95;ReadPosRankSum=1.701;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:87:811,87,0 chrXV 55390 . T G 1565 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=9.72;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:1598,174,0 chrXV 55394 . G C 1635 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;QD=9.97;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:1668,177,0 chrXV 55398 . C T 1776 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=0;QD=10.33;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:1809,183,0 chrXV 55421 . T C 1907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.154;DP=177;Dels=0.00;FS=7.302;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=38.86;MQ0=0;MQRankSum=-2.938;QD=10.77;ReadPosRankSum=4.089;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:6,171:177:99:1940,207,0 chrXV 55423 . C T 2065 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;QD=11.41;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:2098,216,0 chrXV 55488 . T C 3615.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.9067;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=18.35;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3615,387,0 chrXV 55506 . G A 3998.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.1551;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=19.89;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:3998,423,0 chrXV 55563 . T C 4500.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.9073;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=20.64;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4500,486,0 chrXV 55739 . G C 5325.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.56;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5325,562,0 chrXV 56070 . C T 3003 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.1973;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.58;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3036,312,0 chrXV 56211 . C A 2504 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.52;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2537,264,0 chrXV 56311 . C T 1476 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=20.22;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1509,159,0 chrXV 56322 . T C 1675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=-1.078;QD=18.41;ReadPosRankSum=1.655;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1708,180,0 chrXV 56429 . C A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=25.86;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3269,337,0 chrXV 56450 . C T 2623 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=25.22;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2656,273,0 chrXV 56600 . G C 3711.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=21.21;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:99:3711,396,0 chrXV 56604 . G A 3632.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.49;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3632,382,0 chrXV 56640 . G A 2680 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=19.42;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2713,291,0 chrXV 56987 . A G 3997.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0656;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.98;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3997,418,0 chrXV 57010 . A T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.19;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3726,388,0 chrXV 57309 . T C 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=164;Dels=0.00;FS=3.029;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.816;QD=23.57;ReadPosRankSum=2.359;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3865,414,0 chrXV 57448 . C T 4870.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.1943;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=25.90;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4870,505,0 chrXV 57609 . C A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.72;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3408,357,0 chrXV 57629 . T C 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.909;DP=142;Dels=0.00;FS=20.516;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.147;QD=21.36;ReadPosRankSum=4.132;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:6,136:142:99:3066,312,0 chrXV 57711 . C T 4314.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.46;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4314,454,0 chrXV 57712 . T C 4144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=203;Dels=0.00;FS=3.587;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.336;QD=20.41;ReadPosRankSum=1.680;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4144,450,0 chrXV 57800 . G A 4486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.218;QD=24.65;ReadPosRankSum=0.438;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4486,438,0 chrXV 57877 . A G 4485.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.48;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4485,472,0 chrXV 57992 . C T 4350.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.4071;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=25.00;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4350,451,0 chrXV 58067 . T C 3787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=166;Dels=0.00;FS=8.185;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.636;QD=22.81;ReadPosRankSum=2.390;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3787,408,0 chrXV 58160 . C T 4170.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.43;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:4170,450,0 chrXV 58361 . C T 6927.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=15.1829;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.34;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:6927,718,0 chrXV 58608 . T A 5005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=235;Dels=0.00;FS=5.515;HaplotypeScore=20.1227;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.039;QD=21.30;ReadPosRankSum=1.703;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5005,532,0 chrXV 58673 . A G 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.462;QD=21.81;ReadPosRankSum=1.687;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3380,369,0 chrXV 58899 . C T 4921.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.90;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4921,514,0 chrXV 58998 . T A 4952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=211;Dels=0.00;FS=4.246;HaplotypeScore=5.0704;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=1.237;QD=23.47;ReadPosRankSum=1.716;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:4952,517,0 chrXV 59008 . G A 4672.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.4364;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.01;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4672,484,0 chrXV 59467 . G A 5402.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=16.4640;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.78;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5402,559,0 chrXV 59544 . T C 5239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=227;Dels=0.00;FS=2.977;HaplotypeScore=14.3611;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.855;QD=23.08;ReadPosRankSum=2.428;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:2,225:227:99:5239,556,0 chrXV 59664 . C T 5202.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.9608;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.77;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5202,541,0 chrXV 59737 . G A 4693.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.3643;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.35;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4693,487,0 chrXV 59847 . G A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.2808;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=24.17;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3795,405,0 chrXV 60030 . A G 2258 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=19.81;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2291,240,0 chrXV 60045 . T A 1933 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=3.4825;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=18.59;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1966,201,0 chrXV 60310 . T C 407 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.35;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:48:440,48,0 chrXV 61111 . A G 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.559;QD=23.65;ReadPosRankSum=1.667;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3807,420,0 chrXV 61694 . A G 5238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=16.1472;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-1.380;QD=21.92;ReadPosRankSum=1.717;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:1,235:239:99:5238,570,0 chrXV 61748 . C T 6546.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.42;SB=-3.337e+03 GT:AD:DP:GQ:PL 1/1:0,291:292:99:6546,673,0 chrXV 61766 . T C 6201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=294;Dels=0.00;FS=7.107;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.931;QD=21.09;ReadPosRankSum=2.408;SB=-3.416e+03 GT:AD:DP:GQ:PL 1/1:2,292:294:99:6201,693,0 chrXV 61901 . G A 5413.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=11.8914;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.00;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:0,241:246:99:5413,585,0 chrXV 62039 . G A 6713.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=8.8851;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.64;SB=-3.728e+03 GT:AD:DP:GQ:PL 1/1:0,283:284:99:6713,697,0 chrXV 62062 . G A 7600.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=6.4840;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.28;SB=-3.771e+03 GT:AD:DP:GQ:PL 1/1:0,308:313:99:7600,784,0 chrXV 62108 . A G 8143.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=366;Dels=0.00;FS=3.708;HaplotypeScore=24.1059;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.999;QD=22.25;ReadPosRankSum=1.656;SB=-4.022e+03 GT:AD:DP:GQ:PL 1/1:1,363:366:99:8143,880,0 chrXV 62400 . G A 5622.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=19.8205;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.75;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:5622,580,0 chrXV 62432 . C T 6033.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=12.6723;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.34;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:6033,628,0 chrXV 62744 . G A 4846.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=17.1200;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.64;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4846,496,0 chrXV 62866 . C A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3651,373,0 chrXV 63524 . C T 5126.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.02;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5126,523,0 chrXV 63707 . G A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3658,376,0 chrXV 65559 . G A 2675 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=25.24;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2708,279,0 chrXV 65716 . A G 3454.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.3583;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.67;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3454,372,0 chrXV 65800 . G A 3623.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.22;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3623,370,0 chrXV 65818 . A G 3438.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.04;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3438,378,0 chrXV 66022 . A T 5305.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.3707;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.38;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5305,550,0 chrXV 66373 . A G 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.595;QD=20.45;ReadPosRankSum=1.705;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2650,294,0 chrXV 66418 . T C 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-0.610;QD=18.44;ReadPosRankSum=1.708;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2652,288,0 chrXV 66421 . G A 2639 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.08;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2672,285,0 chrXV 66814 . C G 6411.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.48;SB=-3.404e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:6411,688,0 chrXV 67090 . A T 4528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.693;DP=226;Dels=0.00;FS=2.491;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=-1.502;QD=20.04;ReadPosRankSum=2.960;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:3,223:226:99:4528,486,0 chrXV 67130 . C G 3586.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=35.36;MQ0=0;QD=19.70;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3586,387,0 chrXV 67143 . T G 2752 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=0;QD=18.23;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2785,300,0 chrXV 67145 . G A 2826 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=18.84;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2859,297,0 chrXV 67147 . A G 2767 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.08;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2800,291,0 chrXV 67149 . C T 2785 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.21;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2818,291,0 chrXV 67175 . C G 2150 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.0092;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=0;QD=16.29;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2183,234,0 chrXV 67209 . G A 1385 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=15.22;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1418,147,0 chrXV 67210 . G A 1397 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=15.02;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1430,147,0 chrXV 67223 . A G 1624 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=16.24;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1657,177,0 chrXV 67274 . C T 2721 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=23.46;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2754,282,0 chrXV 67367 . A G 3145 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=25.16;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3178,333,0 chrXV 67407 . T C 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=146;Dels=0.00;FS=2.844;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=1.026;QD=25.14;ReadPosRankSum=2.314;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3670,399,0 chrXV 67526 . T C 2139 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.39;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2172,240,0 chrXV 67610 . T G 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.505;HaplotypeScore=9.0809;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.705;QD=24.02;ReadPosRankSum=1.705;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3155,339,0 chrXV 67655 . C A 3176 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.70;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3209,331,0 chrXV 67774 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=23.60;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3267,342,0 chrXV 67780 . T C 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-1.732;QD=20.80;ReadPosRankSum=1.706;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2820,315,0 chrXV 67831 . A G 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=131;Dels=0.00;FS=10.092;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.852;QD=19.18;ReadPosRankSum=2.914;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:3,126:131:99:2545,276,0 chrXV 68320 . A G 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=177;Dels=0.00;FS=9.334;HaplotypeScore=14.4722;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.374;QD=22.80;ReadPosRankSum=2.914;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:3,172:177:99:4036,444,0 chrXV 68535 . A G 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.803;QD=23.71;ReadPosRankSum=1.711;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3889,417,0 chrXV 69357 . A G 4576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=197;Dels=0.00;FS=3.262;HaplotypeScore=15.5699;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.044;QD=23.23;ReadPosRankSum=1.697;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4576,484,0 chrXV 69484 . C G 3599.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.22;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3599,396,0 chrXV 69652 . C T 4086.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.39;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4086,430,0 chrXV 69757 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.151;DP=174;Dels=0.00;FS=10.470;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=1.650;QD=19.55;ReadPosRankSum=4.067;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:6,165:174:99:3401,363,0 chrXV 69778 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.3110;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=19.57;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3144,336,0 chrXV 69894 . T C 2847 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.49;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2880,315,0 chrXV 70127 . C A 4782.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4782,499,0 chrXV 70221 . T A 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=178;Dels=0.00;FS=5.220;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.814;QD=24.53;ReadPosRankSum=2.961;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:4367,454,0 chrXV 70272 . C A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.95;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4489,460,0 chrXV 70322 . A G 5055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.1149;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.649;QD=23.84;ReadPosRankSum=1.715;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:1,208:212:99:5055,555,0 chrXV 70393 . C T 5991.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.2628;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.16;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5991,613,0 chrXV 70894 . C T 3161 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.24;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3194,331,0 chrXV 70941 . C T 2559 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.48;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2592,261,0 chrXV 70998 . T C 2965 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.5869;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.91;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2998,321,0 chrXV 71038 . T C 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=3.237;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.439;QD=24.87;ReadPosRankSum=1.673;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2968,315,0 chrXV 71084 . C T 2156 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.6882;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.18;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2189,231,0 chrXV 71229 . A T 2307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=102;Dels=0.00;FS=2.993;HaplotypeScore=13.9641;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.122;QD=22.62;ReadPosRankSum=2.401;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2340,243,0 chrXV 71245 . A G 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.538;DP=112;Dels=0.00;FS=7.412;HaplotypeScore=9.5495;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-2.406;QD=21.90;ReadPosRankSum=2.406;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2486,248,0 chrXV 71578 . C T 3031 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0697;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.14;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3064,318,0 chrXV 71623 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0816;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.54;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2952,312,0 chrXV 71725 . G A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3258,337,0 chrXV 71821 . C T 4819.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.33;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4819,499,0 chrXV 72611 . A G 2335 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.96;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2368,255,0 chrXV 72741 . A C 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=151;Dels=0.00;FS=10.221;HaplotypeScore=10.8725;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.577;QD=22.44;ReadPosRankSum=2.953;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:3388,366,0 chrXV 72797 . T C 2428 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2461,264,0 chrXV 73040 . A G 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.159;DP=189;Dels=0.00;FS=9.042;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.314;QD=24.62;ReadPosRankSum=2.410;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:2,184:189:99:4653,501,0 chrXV 73327 . T C 4506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=208;Dels=0.00;FS=4.096;HaplotypeScore=9.8131;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-1.349;QD=21.66;ReadPosRankSum=1.715;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4506,498,0 chrXV 73383 . T C 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=3.350;HaplotypeScore=147.9525;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.671;QD=19.46;ReadPosRankSum=1.652;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3386,354,0 chrXV 73395 . T G 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=175;Dels=0.00;FS=6.402;HaplotypeScore=4.9041;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-0.386;QD=17.15;ReadPosRankSum=2.379;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3034,333,0 chrXV 73503 . T A 5522.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.8249;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.22;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5522,568,0 chrXV 73628 . A T 5153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=20.6272;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-1.260;QD=23.42;ReadPosRankSum=1.669;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5153,541,0 chrXV 73823 . A G 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.584;QD=23.99;ReadPosRankSum=1.690;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:4006,432,0 chrXV 73877 . T C 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=4.223;HaplotypeScore=12.0333;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.133;QD=23.15;ReadPosRankSum=1.688;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3611,381,0 chrXV 74338 . G T 5733.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=14.2642;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.94;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5733,598,0 chrXV 75860 . A G 5251.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.9250;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.54;SB=-2.859e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5251,553,0 chrXV 76001 . C T 6086.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=26.8987;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.71;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6086,634,0 chrXV 76655 . A G 2791 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=21.31;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2824,312,0 chrXV 76693 . A C 2077 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=134;Dels=0.00;FS=3.563;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=37.92;MQ0=0;MQRankSum=-1.008;QD=15.50;ReadPosRankSum=1.577;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2110,228,0 chrXV 76700 . G A 1709 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=0;QD=14.36;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1742,189,0 chrXV 76703 . G A 1484 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=3.174;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=0;MQRankSum=-1.604;QD=13.74;ReadPosRankSum=1.476;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1517,156,0 chrXV 76704 . G C 1427 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.402;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;MQRankSum=-1.732;QD=13.59;ReadPosRankSum=1.567;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1460,156,0 chrXV 76707 . A G 1533 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;QD=13.10;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:1566,165,0 chrXV 76718 . C T 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.407;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;MQRankSum=0.460;QD=14.48;ReadPosRankSum=-0.406;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:1887,179,0 chrXV 76776 . T C 2759 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.90;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2792,300,0 chrXV 76902 . A G 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;MQRankSum=0.137;QD=22.60;ReadPosRankSum=1.650;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2881,315,0 chrXV 76985 . G A 2481 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=20.67;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2514,270,0 chrXV 76996 . G A 2447 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3994;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=21.09;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2480,255,0 chrXV 77156 . C G 1816 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=21.12;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1849,201,0 chrXV 77158 . G T 1779 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=21.96;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1812,186,0 chrXV 77167 . C T 1742 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=21.77;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1775,183,0 chrXV 77220 . T C 1726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=4.361;HaplotypeScore=82.9223;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;MQRankSum=-1.252;QD=17.09;ReadPosRankSum=1.698;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1759,198,0 chrXV 77240 . T C 2447 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=20.74;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2480,264,0 chrXV 77289 . T C 2436 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=19.80;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2469,276,0 chrXV 77319 . G A 2101 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.22;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2134,219,0 chrXV 77347 . T C 1643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=93;Dels=0.00;FS=2.610;HaplotypeScore=160.1086;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;MQRankSum=-0.381;QD=17.67;ReadPosRankSum=2.142;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:3,90:93:99:1676,180,0 chrXV 78920 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3566,372,0 chrXV 79026 . G A 4320.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.61;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4320,448,0 chrXV 79297 . C G 3951.01 SnpCluster AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=19.66;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:3951,426,0 chrXV 79304 . A T 3710.01 SnpCluster AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=18.46;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3710,399,0 chrXV 79305 . T A 3672.01 SnpCluster AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=18.27;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3672,402,0 chrXV 79585 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.7932;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=23.68;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3979,418,0 chrXV 79627 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=22.32;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2957,306,0 chrXV 80008 . A G 3808.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.7729;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.27;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3808,420,0 chrXV 80113 . C A 1580 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.52;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1613,165,0 chrXV 80409 . G A 2165 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.09;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2198,225,0 chrXV 80423 . G C 2188 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.71;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2221,237,0 chrXV 80449 . C T 2309 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.08;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2342,240,0 chrXV 80664 . C T 4474.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.6851;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.18;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4474,457,0 chrXV 80920 . T C 5610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=238;Dels=0.00;FS=10.985;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.722;QD=23.57;ReadPosRankSum=2.920;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:3,235:238:99:5610,595,0 chrXV 80986 . G A 4363.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.3513;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.71;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4363,448,0 chrXV 82212 . G T 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=3.127;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.944;QD=18.36;ReadPosRankSum=1.567;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:3506,372,0 chrXV 82213 . A G 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.322;DP=191;Dels=0.00;FS=12.557;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-1.071;QD=18.04;ReadPosRankSum=3.395;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:4,186:191:99:3446,372,0 chrXV 82531 . A G 5439.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.65;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,226:230:99:5439,594,0 chrXV 83896 . T C 4147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.957;QD=25.60;ReadPosRankSum=1.668;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:4147,447,0 chrXV 86817 . G T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.26;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3513,364,0 chrXV 87033 . C T 2572 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=23.38;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2605,273,0 chrXV 87062 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=22.00;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2189,228,0 chrXV 87079 . C A 2102 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=23.89;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2135,219,0 chrXV 87126 . G T 1688 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.92;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1721,183,0 chrXV 87163 . T A 1633 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.33;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1666,171,0 chrXV 87202 . G A 1336 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.90;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1369,144,0 chrXV 87280 . A T 1452 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=21.67;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1485,153,0 chrXV 87288 . T G 1426 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=52.6232;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=21.94;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1459,156,0 chrXV 87344 . T C 1197 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.58;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1230,135,0 chrXV 88067 . G A 6072.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=11.8052;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-3.058e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6072,631,0 chrXV 88251 . A G 4488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=202;Dels=0.00;FS=5.466;HaplotypeScore=7.1118;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.455;QD=22.22;ReadPosRankSum=2.895;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:4488,489,0 chrXV 88413 . C A 4195.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.7634;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.40;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4195,447,0 chrXV 88659 . G T 4138.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4138,430,0 chrXV 89001 . A G 5761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=249;Dels=0.00;FS=2.885;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.144;QD=23.14;ReadPosRankSum=2.410;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:2,245:249:99:5761,607,0 chrXV 89207 . C T 4956.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.43;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4956,520,0 chrXV 89223 . T A 4239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=0.765;QD=19.63;ReadPosRankSum=1.668;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4239,450,0 chrXV 89229 . A C 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=226;Dels=0.00;FS=3.699;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-1.670;QD=17.27;ReadPosRankSum=1.717;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:3904,411,0 chrXV 89588 . A G 1719 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.62;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1752,201,0 chrXV 90174 . A C 2252 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=14.34;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2285,240,0 chrXV 90232 . C T 2427 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=18.67;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2460,258,0 chrXV 90313 . A G 2376 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.48;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2409,258,0 chrXV 90328 . C T 2468 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.23;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2501,264,0 chrXV 90466 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.41;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3170,330,0 chrXV 90505 . T A 4346.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=22.40;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4346,459,0 chrXV 90508 . A T 4335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=6.543;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=0.482;QD=22.35;ReadPosRankSum=1.679;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4335,454,0 chrXV 90526 . G A 4754.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=22.86;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4754,493,0 chrXV 90565 . A T 4023.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.1700;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=21.86;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4023,426,0 chrXV 90661 . C A 4432.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=25.92;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4432,457,0 chrXV 90685 . A G 4643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=1.226;QD=21.90;ReadPosRankSum=1.618;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4643,504,0 chrXV 90781 . G A 5821.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=13.6490;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.13;SB=-2.923e+03 GT:AD:DP:GQ:PL 1/1:0,259:263:99:5821,625,0 chrXV 90802 . A C 5806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=258;Dels=0.00;FS=4.126;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.257;QD=22.50;ReadPosRankSum=1.719;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:1,255:258:99:5806,636,0 chrXV 90886 . C T 4994.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.34;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4994,532,0 chrXV 90949 . A G 4737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.6541;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.049;QD=23.22;ReadPosRankSum=1.698;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4737,510,0 chrXV 91150 . G A 3182 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.36;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3215,348,0 chrXV 91298 . T C 2637 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.2230;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.10;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2670,285,0 chrXV 91399 . A G 2390 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=22.55;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2423,252,0 chrXV 91424 . A C 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=113;Dels=0.00;FS=2.645;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.120;QD=20.81;ReadPosRankSum=2.363;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2385,249,0 chrXV 91507 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=24.84;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2914,303,0 chrXV 91589 . A C 2773 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;QD=21.33;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2806,303,0 chrXV 91599 . T C 2582 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.24;MQ0=0;QD=20.17;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2615,291,0 chrXV 91615 . C G 2003 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.57;MQ0=0;QD=17.42;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2036,237,0 chrXV 91618 . C G 2055 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=18.35;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2088,234,0 chrXV 91656 . C A 1806 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;QD=18.06;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1839,195,0 chrXV 91680 . A G 1955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.757;DP=109;Dels=0.00;FS=2.411;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;MQRankSum=0.636;QD=17.94;ReadPosRankSum=1.514;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:3,105:109:99:1988,201,0 chrXV 91686 . G A 2090 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;QD=19.17;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2123,225,0 chrXV 91733 . T A 2321 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=40.64;MQ0=0;QD=18.13;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2354,252,0 chrXV 91740 . A T 1951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;MQRankSum=0.515;QD=16.68;ReadPosRankSum=0.725;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:1984,210,0 chrXV 91777 . C T 1743 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.57;MQ0=0;QD=17.09;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1776,192,0 chrXV 91780 . C T 1574 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.43;MQ0=0;QD=16.06;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1607,174,0 chrXV 91789 . C T 1483 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=38.65;MQ0=0;QD=15.95;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1516,171,0 chrXV 91823 . A G 1422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;MQRankSum=-1.786;QD=20.03;ReadPosRankSum=2.901;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:99:1455,168,0 chrXV 91826 . C G 1411 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;QD=20.16;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1444,165,0 chrXV 91862 . A G 884 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;QD=17.33;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:917,108,0 chrXV 91895 . G C 601 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=8.84;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,67:68:72:634,72,0 chrXV 91910 . T C 632 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;QD=9.43;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:75:665,75,0 chrXV 92185 . C T 5037.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.3347;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.83;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5037,517,0 chrXV 92619 . C T 1325 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.0396;MLEAC=2;MLEAF=1.00;MQ=40.39;MQ0=0;QD=12.74;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,101:104:99:1358,150,0 chrXV 92649 . A C 1252 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=0;QD=12.91;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1285,138,0 chrXV 92652 . T C 1289 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=13.15;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1322,138,0 chrXV 92669 . T C 1442 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=0;QD=14.42;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1475,162,0 chrXV 92690 . G A 2067 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.8857;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=18.29;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2100,222,0 chrXV 92712 . A C 2860 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=20.58;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2893,312,0 chrXV 92889 . G A 3387.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=24.90;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3387,349,0 chrXV 92914 . G T 2883 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=23.25;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2916,303,0 chrXV 92932 . C T 2722 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=22.31;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2755,294,0 chrXV 93037 . A C 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.312;QD=22.84;ReadPosRankSum=1.675;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2842,300,0 chrXV 93082 . T C 2854 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.02;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2887,312,0 chrXV 93135 . C T 2518 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.53;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2551,267,0 chrXV 93175 . C T 1681 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.83;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1714,180,0 chrXV 93191 . G A 1606 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=23.62;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1639,171,0 chrXV 93859 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.9967;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=10.80;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:1588,174,0 chrXV 93950 . C T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.61;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3406,352,0 chrXV 93980 . T C 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.642;DP=123;Dels=0.00;FS=7.550;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-1.576;QD=21.71;ReadPosRankSum=3.771;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:5,117:123:99:2703,288,0 chrXV 94048 . T G 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=0.131;QD=22.22;ReadPosRankSum=1.699;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2411,258,0 chrXV 94056 . G A 2454 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.53;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2487,267,0 chrXV 94227 . T C 4632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.9972;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-1.337;QD=24.90;ReadPosRankSum=1.676;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4632,498,0 chrXV 94417 . C T 3687.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.4956;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=24.26;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3687,376,0 chrXV 94445 . A T 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.5379;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-1.848;QD=22.28;ReadPosRankSum=2.278;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3219,342,0 chrXV 94574 . C A 2342 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.5486;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.29;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2375,246,0 chrXV 94646 . T A 1099 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.13;MQ0=0;QD=15.48;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1132,117,0 chrXV 94686 . T A 1146 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=11.9704;MLEAC=2;MLEAF=1.00;MQ=35.38;MQ0=0;QD=13.33;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1179,123,0 chrXV 94688 . A T 1075 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.583;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=36.48;MQ0=0;MQRankSum=-1.265;QD=12.08;ReadPosRankSum=1.693;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1108,117,0 chrXV 94694 . G A 1197 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.41;MQ0=0;QD=13.30;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1230,129,0 chrXV 94697 . G A 1215 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;QD=13.21;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1248,129,0 chrXV 94761 . T C 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-1.637;QD=21.55;ReadPosRankSum=1.685;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1606,171,0 chrXV 94782 . T C 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.016;QD=23.05;ReadPosRankSum=2.387;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:2,76:79:99:1854,195,0 chrXV 94810 . G A 1477 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=11.0630;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.72;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1510,156,0 chrXV 95393 . A G 4086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.091;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.393;QD=25.07;ReadPosRankSum=1.626;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4086,438,0 chrXV 95687 . T G 3228.29 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3262,354,0 chrXV 95966 . T A 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=130;Dels=0.00;FS=3.897;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.400;QD=24.62;ReadPosRankSum=1.705;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3234,336,0 chrXV 96219 . G T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.2860;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3434,358,0 chrXV 96254 . G A 3954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=4.195;HaplotypeScore=13.2131;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.710;QD=25.18;ReadPosRankSum=1.710;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3954,409,0 chrXV 96634 . C A 4777.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=27.30;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4777,493,0 chrXV 96853 . T C 3144 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=22.62;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3177,348,0 chrXV 96855 . G A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=23.98;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3309,345,0 chrXV 96867 . A G 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.1687;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.933;QD=22.63;ReadPosRankSum=1.652;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2975,315,0 chrXV 96979 . A G 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=4.1755;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=0.916;QD=20.91;ReadPosRankSum=1.707;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3023,324,0 chrXV 96983 . T A 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=142;Dels=0.00;FS=7.098;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.338;QD=20.73;ReadPosRankSum=2.346;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2977,309,0 chrXV 97058 . C T 2652 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.29;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,115:119:99:2685,276,0 chrXV 97129 . T A 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=128;Dels=0.00;FS=5.744;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.236;QD=23.62;ReadPosRankSum=2.866;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:3056,315,0 chrXV 97199 . G A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.53;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3577,384,0 chrXV 97637 . T G 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.235;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.234;QD=21.99;ReadPosRankSum=1.707;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3090,333,0 chrXV 97910 . A G 1993 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,84:86:99:2026,219,0 chrXV 97994 . A G 2046 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.95;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2079,222,0 chrXV 98162 . T G 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.533;QD=24.07;ReadPosRankSum=1.699;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2536,273,0 chrXV 98544 . T A 3128 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.83;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3161,321,0 chrXV 98627 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.23;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3611,370,0 chrXV 98723 . G A 3997.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.3144;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3997,406,0 chrXV 98780 . C T 3946.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.1649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3946,415,0 chrXV 98981 . G A 4725.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4725,502,0 chrXV 99391 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.9114;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.74;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:3261,336,0 chrXV 99428 . T C 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=155;Dels=0.00;FS=4.961;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.322;QD=24.05;ReadPosRankSum=3.369;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:4,151:155:99:3727,396,0 chrXV 99543 . T C 3838.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.26;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3838,411,0 chrXV 99594 . T C 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.311;DP=176;Dels=0.00;FS=12.806;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-2.348;QD=22.77;ReadPosRankSum=3.410;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:4,172:176:99:4007,426,0 chrXV 99654 . C T 4721.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=23.14;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4721,496,0 chrXV 99664 . A T 4846.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=23.30;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4846,496,0 chrXV 99690 . T C 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=203;Dels=0.00;FS=7.104;HaplotypeScore=9.7228;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-1.203;QD=21.67;ReadPosRankSum=2.413;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:2,199:203:99:4400,465,0 chrXV 99739 . T C 4397.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.3300;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.26;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4397,477,0 chrXV 99844 . A G 5416.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.73;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5416,580,0 chrXV 99911 . G C 3876.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.98;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:3876,417,0 chrXV 99913 . T C 3937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=192;Dels=0.00;FS=2.976;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=0.876;QD=20.51;ReadPosRankSum=2.398;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:3937,412,0 chrXV 100003 . G A 6067.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=14.4466;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.98;SB=-3.307e+03 GT:AD:DP:GQ:PL 1/1:0,250:253:99:6067,663,0 chrXV 100171 . G A 4601.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.60;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4601,472,0 chrXV 100194 . A G 4859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=221;Dels=0.00;FS=2.974;HaplotypeScore=9.8821;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-1.716;QD=21.99;ReadPosRankSum=2.427;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:4859,514,0 chrXV 100228 . A G 4693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=215;Dels=0.00;FS=6.025;HaplotypeScore=16.7105;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.218;QD=21.83;ReadPosRankSum=2.891;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:3,211:215:99:4693,499,0 chrXV 100273 . T C 5394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.387;QD=24.41;ReadPosRankSum=1.716;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:5394,577,0 chrXV 100316 . A G 4270.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.68;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4270,450,0 chrXV 100319 . T C 4170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-1.212;QD=19.58;ReadPosRankSum=1.716;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4170,444,0 chrXV 100603 . A G 6325.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.14;SB=-3.327e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:6325,687,0 chrXV 100717 . T C 4341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=200;Dels=0.00;FS=13.548;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.561;QD=21.71;ReadPosRankSum=2.924;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:3,196:200:99:4341,465,0 chrXV 101077 . C T 2616 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2649,276,0 chrXV 101328 . T C 637 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.33;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,38:39:75:670,75,0 chrXV 101400 . A G 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.126;DP=69;Dels=0.00;FS=13.617;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.326;QD=24.75;ReadPosRankSum=1.080;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1741,186,0 chrXV 101463 . T C 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.813;QD=25.93;ReadPosRankSum=1.661;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2574,276,0 chrXV 101577 . C A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.2727;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.89;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3392,349,0 chrXV 101984 . C T 5632.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.8552;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=26.82;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5632,592,0 chrXV 102078 . C A 2964 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.34;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2997,315,0 chrXV 102107 . C T 3387.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.8748;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.69;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3387,363,0 chrXV 102146 . A G 4171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.037;QD=22.19;ReadPosRankSum=1.713;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4171,436,0 chrXV 102204 . G A 4697.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.4516;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.80;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4697,487,0 chrXV 102305 . C T 3119 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.39;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3152,333,0 chrXV 102386 . A T 3688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=158;Dels=0.00;FS=3.066;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.601;QD=23.34;ReadPosRankSum=1.666;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3688,384,0 chrXV 102500 . T C 3496.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.85;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3496,378,0 chrXV 102671 . A T 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=154;Dels=0.00;FS=3.882;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.427;QD=24.31;ReadPosRankSum=1.687;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3743,391,0 chrXV 102760 . A G 4583.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.4676;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4583,481,0 chrXV 102989 . C T 4251.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.61;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4251,439,0 chrXV 103443 . A G 2493 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.20;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2526,279,0 chrXV 103521 . C T 2665 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.98;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2698,282,0 chrXV 103524 . A G 2502 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.3704;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.70;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,123:127:99:2535,273,0 chrXV 104628 . A G 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=4.032;HaplotypeScore=11.7659;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=1.048;QD=24.26;ReadPosRankSum=1.670;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4052,432,0 chrXV 104808 . G C 3187 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=19.55;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3220,342,0 chrXV 104814 . C T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=19.95;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3311,348,0 chrXV 104826 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=0.110;QD=18.58;ReadPosRankSum=1.652;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:1,172:176:99:3270,345,0 chrXV 104856 . A G 3578.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.66;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:3578,384,0 chrXV 105006 . A G 5001.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=23.93;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:5001,526,0 chrXV 105232 . T G 4167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.254;DP=211;Dels=0.00;FS=17.963;HaplotypeScore=14.4734;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=-0.103;QD=19.75;ReadPosRankSum=3.320;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:4,207:211:99:4167,444,0 chrXV 105242 . G A 4317.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=21.16;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4317,462,0 chrXV 105283 . C T 3906.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=18.34;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:3906,414,0 chrXV 105291 . T G 3865.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.95;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:3865,405,0 chrXV 105423 . T A 4951.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=25.65;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4951,517,0 chrXV 105555 . A G 4672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.476;QD=25.67;ReadPosRankSum=1.694;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4672,498,0 chrXV 105680 . T C 4080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=179;Dels=0.00;FS=3.085;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.465;QD=22.79;ReadPosRankSum=1.712;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:1,174:179:99:4080,450,0 chrXV 105728 . C T 3700.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4145;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.13;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3700,399,0 chrXV 105954 . A G 4903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=207;Dels=0.00;FS=4.526;HaplotypeScore=16.7916;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.510;QD=23.69;ReadPosRankSum=1.699;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4903,543,0 chrXV 106151 . C G 2837 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=18.79;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,148:151:99:2870,309,0 chrXV 106156 . C G 2748 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=18.57;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,144:148:99:2781,297,0 chrXV 106264 . C G 2512 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.59;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2545,270,0 chrXV 106841 . A T 5220.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.9547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.162;QD=24.39;ReadPosRankSum=1.684;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:5220,541,0 chrXV 107219 . T C 3076 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.4183;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3109,339,0 chrXV 107546 . C T 6811.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.23;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:6811,706,0 chrXV 107676 . G A 5046.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.2896;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.73;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5046,523,0 chrXV 107690 . A G 4524.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.9671;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.65;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4524,486,0 chrXV 107858 . A G 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.7393;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=1.433;QD=24.23;ReadPosRankSum=1.647;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3925,412,0 chrXV 107861 . C T 3886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=3.625;HaplotypeScore=3.1725;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=-1.013;QD=24.14;ReadPosRankSum=1.318;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3886,411,0 chrXV 108245 . A G 5059.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5059,544,0 chrXV 108354 . A G 5079.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=224;Dels=0.00;FS=3.660;HaplotypeScore=15.4170;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.608;QD=22.67;ReadPosRankSum=1.701;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:5079,550,0 chrXV 108394 . G A 4784.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.0025;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.67;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4784,502,0 chrXV 108945 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=21.32;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3018,312,0 chrXV 108950 . T A 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=2.951;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.419;QD=20.13;ReadPosRankSum=2.378;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2811,294,0 chrXV 109106 . G A 3350.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.77;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3350,345,0 chrXV 109426 . G C 5646.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=29.9159;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.15;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:0,261:266:99:5646,604,0 chrXV 109765 . T C 4303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=206;Dels=0.00;FS=11.019;HaplotypeScore=14.2350;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.907;QD=20.89;ReadPosRankSum=1.307;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:3,203:206:99:4303,451,0 chrXV 109895 . C T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3622,378,0 chrXV 110203 . T C 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=156;Dels=0.00;FS=6.453;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.847;QD=22.16;ReadPosRankSum=2.418;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3457,366,0 chrXV 110413 . T C 4275.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.49;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4275,453,0 chrXV 110483 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.4908;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.03;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3304,348,0 chrXV 110509 . C T 2841 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.89;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2874,303,0 chrXV 110517 . C T 2979 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.74;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3012,312,0 chrXV 110676 . T C 1293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.061;DP=64;Dels=0.00;FS=11.869;HaplotypeScore=14.4424;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.466;QD=20.20;ReadPosRankSum=2.369;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:2,59:64:99:1326,141,0 chrXV 110844 . A G 24.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.464;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=7.5499;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=0;MQRankSum=-0.591;QD=1.24;ReadPosRankSum=-3.154;SB=-2.676e+01 GT:AD:DP:GQ:PL 1/1:5,13:20:6:56,6,0 chrXV 111070 . T C 976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.81;MQ0=0;MQRankSum=-1.075;QD=16.83;ReadPosRankSum=1.673;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1009,108,0 chrXV 111076 . T G 918 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.88;MQ0=0;QD=14.57;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:951,102,0 chrXV 111086 . G A 887 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=53.1493;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;QD=13.44;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:96:920,96,0 chrXV 111105 . C T 743 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=10.04;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:84:776,84,0 chrXV 111138 . T G 963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=0;MQRankSum=-1.650;QD=11.46;ReadPosRankSum=1.608;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:996,105,0 chrXV 111160 . T A 1146 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.02;FS=0.000;HaplotypeScore=9.6651;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=0;QD=12.73;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1179,123,0 chrXV 111161 . G A 1146 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=0;QD=12.46;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1179,123,0 chrXV 111207 . A G 2101 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=92.7848;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=19.45;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2134,222,0 chrXV 111244 . A G 2361 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=21.27;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2394,252,0 chrXV 111282 . A C 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=4.159;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=0.367;QD=19.51;ReadPosRankSum=1.697;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,98:101:99:2004,216,0 chrXV 111293 . C T 2343 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=22.10;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2376,252,0 chrXV 111761 . A G 4080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=187;Dels=0.00;FS=4.307;HaplotypeScore=10.8954;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.596;QD=21.82;ReadPosRankSum=1.713;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4080,450,0 chrXV 111851 . C T 4548.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=16.7895;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4548,469,0 chrXV 112082 . A T 2472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.790;QD=21.68;ReadPosRankSum=1.671;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2505,264,0 chrXV 112572 . C T 2968 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3001,312,0 chrXV 113253 . A G 2160 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=15.43;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2193,234,0 chrXV 113345 . G C 3212.98 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=15.0814;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=24.16;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3246,354,0 chrXV 113612 . G A 2609 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2642,273,0 chrXV 113653 . C T 3432.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9722;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3432,346,0 chrXV 113780 . G T 731 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.31;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:764,81,0 chrXV 113919 . A G 393 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.71;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,20:21:45:426,45,0 chrXV 113957 . T A 517 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.88;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:60:550,60,0 chrXV 114097 . C T 2521 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=26.26;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2554,267,0 chrXV 114519 . C A 5432.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.9331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5432,565,0 chrXV 114736 . G A 6718.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=22.6856;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.41;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:0,282:287:99:6718,700,0 chrXV 114813 . G A 10033.01 filter AC=2;AF=1.00;AN=2;DP=412;Dels=0.00;FS=0.000;HaplotypeScore=29.0379;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=24.35;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:0,406:412:99:10033,1045,0 chrXV 114935 . C T 12732.01 filter AC=2;AF=1.00;AN=2;DP=513;Dels=0.00;FS=0.000;HaplotypeScore=27.8272;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=24.82;SB=-5.951e+03 GT:AD:DP:GQ:PL 1/1:0,513:513:99:12732,1316,0 chrXV 115050 . G A 176.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.199;DP=767;Dels=0.00;FS=4.901;HaplotypeScore=116.1570;MLEAC=1;MLEAF=0.500;MQ=45.07;MQ0=0;MQRankSum=-7.030;QD=0.23;ReadPosRankSum=-6.653;SB=-3.620e+02 GT:AD:DP:GQ:PL 0/1:613,153:767:99:206,0,10730 chrXV 115062 . G A 2974.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.076;DP=801;Dels=0.00;FS=10.268;HaplotypeScore=146.1347;MLEAC=1;MLEAF=0.500;MQ=43.88;MQ0=0;MQRankSum=-4.500;QD=3.71;ReadPosRankSum=-8.673;SB=-1.076e+03 GT:AD:DP:GQ:PL 0/1:543,257:801:99:3004,0,8418 chrXV 115071 . A G 3167.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.078;DP=769;Dels=0.00;FS=3.074;HaplotypeScore=226.1182;MLEAC=1;MLEAF=0.500;MQ=43.00;MQ0=0;MQRankSum=-1.150;QD=4.12;ReadPosRankSum=-8.114;SB=-1.035e+03 GT:AD:DP:GQ:PL 0/1:505,264:769:99:3197,0,7183 chrXV 115074 . A G 4738.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.613;DP=764;Dels=0.00;FS=11.676;HaplotypeScore=446.1438;MLEAC=1;MLEAF=0.500;MQ=42.86;MQ0=0;MQRankSum=2.705;QD=6.20;ReadPosRankSum=2.792;SB=-2.107e+03 GT:AD:DP:GQ:PL 0/1:439,324:764:99:4738,0,5787 chrXV 115083 . A G 2295.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.692;DP=735;Dels=0.00;FS=2.254;HaplotypeScore=423.6155;MLEAC=1;MLEAF=0.500;MQ=42.05;MQ0=0;MQRankSum=-8.533;QD=3.12;ReadPosRankSum=8.061;SB=-1.062e+03 GT:AD:DP:GQ:PL 0/1:483,252:735:99:2325,0,7682 chrXV 115092 . G A 7282.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.581;DP=678;Dels=0.00;FS=0.000;HaplotypeScore=438.4229;MLEAC=1;MLEAF=0.500;MQ=40.47;MQ0=0;MQRankSum=-14.876;QD=10.74;ReadPosRankSum=1.088;SB=-2.653e+03 GT:AD:DP:GQ:PL 0/1:169,509:678:99:7282,0,1930 chrXV 115095 . A G 5232.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.421;DP=666;Dels=0.00;FS=1.440;HaplotypeScore=198.9762;MLEAC=1;MLEAF=0.500;MQ=40.34;MQ0=0;MQRankSum=-11.817;QD=7.86;ReadPosRankSum=-3.237;SB=-1.869e+03 GT:AD:DP:GQ:PL 0/1:299,367:666:99:5232,0,3690 chrXV 115104 . G A 5312.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.877;DP=611;Dels=0.00;FS=1.591;HaplotypeScore=235.4926;MLEAC=1;MLEAF=0.500;MQ=40.05;MQ0=0;MQRankSum=-14.359;QD=8.69;ReadPosRankSum=-7.638;SB=-1.587e+03 GT:AD:DP:GQ:PL 0/1:235,375:611:99:5312,0,2668 chrXV 115107 . A G 3048.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.113;DP=603;Dels=0.00;FS=0.000;HaplotypeScore=198.3611;MLEAC=1;MLEAF=0.500;MQ=40.17;MQ0=0;MQRankSum=-10.404;QD=5.05;ReadPosRankSum=-10.925;SB=-1.189e+03 GT:AD:DP:GQ:PL 0/1:345,258:603:99:3078,0,4777 chrXV 115110 . A G 230.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.197;DP=598;Dels=0.00;FS=2.776;HaplotypeScore=267.5831;MLEAC=1;MLEAF=0.500;MQ=40.25;MQ0=0;MQRankSum=-3.652;QD=0.38;ReadPosRankSum=5.139;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:534,64:598:99:260,0,7472 chrXV 115116 . G A 4018.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.630;DP=537;Dels=0.00;FS=6.233;HaplotypeScore=338.6082;MLEAC=1;MLEAF=0.500;MQ=41.28;MQ0=0;MQRankSum=-13.074;QD=7.48;ReadPosRankSum=-6.514;SB=-8.380e+02 GT:AD:DP:GQ:PL 0/1:257,279:537:99:4018,0,3048 chrXV 115119 . A G 651.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.634;DP=528;Dels=0.00;FS=0.529;HaplotypeScore=339.5488;MLEAC=1;MLEAF=0.500;MQ=41.26;MQ0=0;MQRankSum=-7.115;QD=1.23;ReadPosRankSum=-8.441;SB=-1.480e+02 GT:AD:DP:GQ:PL 0/1:437,91:528:99:681,0,6340 chrXV 115122 . A G 404.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.564;DP=519;Dels=0.00;FS=0.542;HaplotypeScore=342.6728;MLEAC=1;MLEAF=0.500;MQ=41.38;MQ0=0;MQRankSum=-5.460;QD=0.78;ReadPosRankSum=-1.094;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:434,85:519:99:434,0,6506 chrXV 115128 . G A 2669.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.575;DP=420;Dels=0.00;FS=14.945;HaplotypeScore=245.9093;MLEAC=1;MLEAF=0.500;MQ=43.66;MQ0=0;MQRankSum=-12.079;QD=6.35;ReadPosRankSum=-3.277;SB=-2.720e+02 GT:AD:DP:GQ:PL 0/1:247,173:420:99:2699,0,3162 chrXV 115131 . A G 631.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;DP=399;Dels=0.00;FS=2.414;HaplotypeScore=207.1709;MLEAC=1;MLEAF=0.500;MQ=44.07;MQ0=0;MQRankSum=-6.354;QD=1.58;ReadPosRankSum=1.366;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:336,63:399:99:661,0,4247 chrXV 115164 . A G,T 1013.01 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.382;DP=82;Dels=0.00;FS=1.885;HaplotypeScore=28.4683;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.39;MQ0=0;MQRankSum=1.825;QD=12.35;ReadPosRankSum=-0.448;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/2:7,47,28:82:99:1073,308,257,726,0,726 chrXV 115167 . A T 109.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.141;DP=79;Dels=0.00;FS=26.421;HaplotypeScore=15.4966;MLEAC=1;MLEAF=0.500;MQ=57.60;MQ0=0;MQRankSum=0.385;QD=1.38;ReadPosRankSum=-3.848;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,18:79:99:139,0,1032 chrXV 115253 . C T 5011.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=30.0816;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.79;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,226:230:99:5011,526,0 chrXV 115336 . G T 4517.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=20.9378;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=24.55;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4517,475,0 chrXV 115446 . T C 4872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=16.8294;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.577;QD=22.98;ReadPosRankSum=1.716;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4872,514,0 chrXV 115755 . C T 2819 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.4982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2852,294,0 chrXV 115924 . T C 1506 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1539,165,0 chrXV 115967 . A G 1288 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1321,141,0 chrXV 116289 . C T 1177 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1210,129,0 chrXV 116543 . A G 3224.03 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.36;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3257,351,0 chrXV 116712 . C T 3359.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.39;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3359,349,0 chrXV 116735 . G A 3034 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9133;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.67;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3067,318,0 chrXV 116873 . C T 3059 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3092,318,0 chrXV 117048 . C T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.32;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3415,355,0 chrXV 117077 . A G 2034 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.8719;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.37;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2067,228,0 chrXV 117153 . T C 3908.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.2548;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.12;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3908,414,0 chrXV 117295 . A G 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.403;DP=186;Dels=0.00;FS=8.388;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=1.071;QD=22.37;ReadPosRankSum=3.394;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:4,181:186:99:4160,439,0 chrXV 117367 . A G 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=16.9343;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.000;QD=23.16;ReadPosRankSum=1.711;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3775,402,0 chrXV 117509 . C T 3602.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.7320;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;QD=23.24;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3602,381,0 chrXV 117689 . C A 1494 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.95;MQ0=0;QD=21.97;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1527,162,0 chrXV 117698 . C T 1369 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=0;QD=23.20;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1402,141,0 chrXV 117703 . T A 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;QD=6.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:45,6,0 chrXV 123618 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=2;QD=4.16;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:2,3:5:6:52,6,0 chrXV 123622 . T C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=2;QD=4.16;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,3:5:6:52,6,0 chrXV 123705 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=20.48;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3358,363,0 chrXV 125569 . C T 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.809;DP=199;Dels=0.01;FS=0.000;HaplotypeScore=17.6411;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=0.413;QD=14.69;ReadPosRankSum=3.625;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:5,190:197:99:2956,351,0 chrXV 125570 . T C 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.163;DP=196;Dels=0.01;FS=4.670;HaplotypeScore=16.0637;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-1.334;QD=14.81;ReadPosRankSum=4.074;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:6,189:195:99:2936,351,0 chrXV 125599 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.81;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3645,381,0 chrXV 125641 . C A 4051.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.90;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4051,424,0 chrXV 126162 . T A 2952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.933;QD=25.23;ReadPosRankSum=1.643;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2985,327,0 chrXV 126255 . C T 4922.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.2044;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.64;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4922,508,0 chrXV 126617 . T C 5612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=229;Dels=0.00;FS=2.916;HaplotypeScore=13.7519;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.809;QD=24.51;ReadPosRankSum=2.396;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:5612,595,0 chrXV 126797 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.5589;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.25;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3523,366,0 chrXV 126866 . C G 2254 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=17.89;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2287,240,0 chrXV 126868 . T G 2233 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=18.30;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2266,243,0 chrXV 127096 . A G 2265 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.17;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2298,246,0 chrXV 127240 . G A 3176 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3209,333,0 chrXV 128405 . G A 4028.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.02;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4028,415,0 chrXV 128527 . T C 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.197;QD=22.46;ReadPosRankSum=1.713;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,184:188:99:4223,448,0 chrXV 128581 . C T 4591.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.9978;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.79;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4591,478,0 chrXV 128788 . C G 3818.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.59;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3818,408,0 chrXV 129004 . G A 2094 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=22.76;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2127,219,0 chrXV 129007 . G A 1909 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=21.21;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1942,201,0 chrXV 129347 . C T 3196 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3229,339,0 chrXV 129440 . G A 4055.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.71;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4055,435,0 chrXV 129671 . A G 3170 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.02;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3203,339,0 chrXV 129926 . C G 2214 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6942;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.55;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2247,246,0 chrXV 130049 . A G 2831 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=23.40;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2864,303,0 chrXV 130079 . A C 3155 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=23.54;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3188,339,0 chrXV 130106 . C A 3158 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.57;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3191,333,0 chrXV 130136 . T C 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=130;Dels=0.00;FS=2.573;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-0.202;QD=21.97;ReadPosRankSum=2.900;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2889,303,0 chrXV 130283 . C T 4252.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.9758;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=22.50;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4252,448,0 chrXV 130289 . A C 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=3.576;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;MQRankSum=0.828;QD=22.67;ReadPosRankSum=1.713;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4104,435,0 chrXV 130337 . C T 3874.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.89;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3874,394,0 chrXV 131195 . A T 5950.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.32;SB=-3.170e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5950,613,0 chrXV 131249 . T G 5347.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.85;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5347,571,0 chrXV 131327 . C T 6885.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=12.4436;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-3.461e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6885,718,0 chrXV 131471 . T G 5237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=213;Dels=0.00;FS=3.113;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.773;QD=24.59;ReadPosRankSum=1.700;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:5237,567,0 chrXV 131661 . G A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.0950;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=24.35;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4067,421,0 chrXV 131688 . T A 3680.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=23.00;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3680,379,0 chrXV 131694 . A G 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.991;QD=20.91;ReadPosRankSum=1.710;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3325,354,0 chrXV 131747 . T C 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-1.206;QD=18.76;ReadPosRankSum=1.677;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2415,267,0 chrXV 131858 . G A 3933.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.0714;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=25.54;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3933,403,0 chrXV 131978 . G A 3112 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.2818;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=22.07;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3145,336,0 chrXV 131990 . T A 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=3.604;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=0.847;QD=22.23;ReadPosRankSum=1.654;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2989,309,0 chrXV 132000 . G A 3039 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=22.51;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3072,315,0 chrXV 132086 . T A 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=154;Dels=0.00;FS=6.397;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.040;QD=20.21;ReadPosRankSum=2.322;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3146,330,0 chrXV 132089 . T C 3023 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.63;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3056,327,0 chrXV 132152 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=5.238;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.232;QD=21.08;ReadPosRankSum=1.710;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3331,354,0 chrXV 132179 . A T 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=4.744;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=0.075;QD=23.50;ReadPosRankSum=1.581;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3784,394,0 chrXV 132221 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.93;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3972,417,0 chrXV 132419 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.6910;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.26;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2801,294,0 chrXV 132501 . G A 1049 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.85;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1082,114,0 chrXV 132600 . A G 1659 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.76;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1692,180,0 chrXV 132710 . A G 2576 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.00;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2609,276,0 chrXV 132713 . G A 2664 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.58;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2697,273,0 chrXV 132965 . G A 4028.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=25.33;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4028,415,0 chrXV 133313 . G A 3108 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.02;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3141,324,0 chrXV 133472 . C A 3071 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.62;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3104,330,0 chrXV 133892 . T C 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=114;Dels=0.00;FS=3.015;HaplotypeScore=12.3765;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.090;QD=23.06;ReadPosRankSum=2.385;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2662,285,0 chrXV 134036 . G A 3558.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.25;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3558,364,0 chrXV 134063 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.10;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3304,345,0 chrXV 134558 . A G 3019 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.96;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3052,327,0 chrXV 134644 . T C 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=4.378;HaplotypeScore=5.5454;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.530;QD=20.40;ReadPosRankSum=1.682;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2828,303,0 chrXV 134750 . A G 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=5.144;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.245;QD=24.74;ReadPosRankSum=1.712;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,169:174:99:4305,459,0 chrXV 134843 . G C 3892.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.59;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3892,414,0 chrXV 135275 . C G 4252.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.2824;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4252,459,0 chrXV 135779 . A G 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=197;Dels=0.00;FS=6.071;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=1.150;QD=20.73;ReadPosRankSum=2.902;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:3,192:197:99:4084,441,0 chrXV 135786 . T C 4115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=201;Dels=0.00;FS=6.065;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-1.498;QD=20.47;ReadPosRankSum=2.955;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:3,197:201:99:4115,450,0 chrXV 136016 . C A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=139.3061;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.39;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3695,385,0 chrXV 136235 . T A 2731 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.83;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2764,288,0 chrXV 136327 . G A 2559 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.25;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2592,267,0 chrXV 136512 . A G 3082 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3115,324,0 chrXV 137115 . G A 4293.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.59;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4293,442,0 chrXV 137304 . G T 4402.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.8259;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.01;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:4402,457,0 chrXV 137682 . G A 3915.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.87;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3915,417,0 chrXV 137942 . G T 1401 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.93;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1434,156,0 chrXV 138302 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.90;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2814,297,0 chrXV 138746 . T C 3283.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0067;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.14;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3283,348,0 chrXV 138754 . G A 2974 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=19.19;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3007,315,0 chrXV 138839 . T C 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=145;Dels=0.00;FS=2.890;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=0.788;QD=17.99;ReadPosRankSum=2.382;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2641,285,0 chrXV 138847 . T C 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.3908;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=0.470;QD=18.21;ReadPosRankSum=1.709;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:2819,300,0 chrXV 139001 . T C 2585 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=21.72;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2618,276,0 chrXV 139013 . A G 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=117;Dels=0.00;FS=3.036;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=1.262;QD=21.93;ReadPosRankSum=2.407;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2599,273,0 chrXV 139015 . T C 2494 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=22.07;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2527,267,0 chrXV 139359 . T G 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=1;MQRankSum=0.543;QD=24.27;ReadPosRankSum=1.712;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4150,442,0 chrXV 139408 . T C 3773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=158;Dels=0.00;FS=2.891;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.401;QD=23.88;ReadPosRankSum=2.403;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3773,399,0 chrXV 139908 . A G 4351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=173;Dels=0.00;FS=10.008;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=0.405;QD=25.15;ReadPosRankSum=2.407;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4351,465,0 chrXV 140012 . T C 4782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=190;Dels=0.00;FS=2.911;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.325;QD=25.17;ReadPosRankSum=2.411;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4782,522,0 chrXV 140220 . T C 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=160;Dels=0.00;FS=4.997;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.118;QD=23.42;ReadPosRankSum=1.688;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3747,402,0 chrXV 140619 . G A 3725.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.5177;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.88;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3725,388,0 chrXV 140746 . C T 2759 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.5954;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.72;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2792,288,0 chrXV 140760 . A G 2388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=118;Dels=0.00;FS=6.135;HaplotypeScore=4.7671;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-0.396;QD=20.24;ReadPosRankSum=2.407;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:2,113:118:99:2421,261,0 chrXV 141040 . T C 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=101;Dels=0.00;FS=3.054;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.304;QD=21.85;ReadPosRankSum=2.304;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2240,240,0 chrXV 141126 . A G 2587 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.50;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2620,273,0 chrXV 141147 . T A 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=129;Dels=0.00;FS=9.018;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.039;QD=21.47;ReadPosRankSum=2.412;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2802,297,0 chrXV 141207 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.56;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3254,336,0 chrXV 141631 . G A 2379 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.86;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:2412,246,0 chrXV 141731 . T C 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-0.798;QD=25.12;ReadPosRankSum=1.709;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3844,402,0 chrXV 142001 . C T 5150.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-2.948e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5150,532,0 chrXV 142608 . C A 2952 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=21.87;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2985,312,0 chrXV 142614 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3503;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.56;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2943,303,0 chrXV 142645 . A G 3542.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.60;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3542,381,0 chrXV 142732 . G A 3517.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.0813;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.59;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3517,375,0 chrXV 142835 . C G 4863.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=24.94;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:0,188:195:99:4863,508,0 chrXV 143022 . A G 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=194;Dels=0.00;FS=3.023;HaplotypeScore=17.3773;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.006;QD=21.30;ReadPosRankSum=2.386;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4133,456,0 chrXV 143072 . C T 4218.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.68;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4218,450,0 chrXV 143229 . C T 4460.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.1181;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.63;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4460,466,0 chrXV 143401 . A G 3851.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.1610;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.55;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3851,411,0 chrXV 143405 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.2075;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=18.89;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3702,396,0 chrXV 143597 . C T 4664.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=16.0018;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=24.42;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4664,481,0 chrXV 143696 . G A 4797.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=22.73;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4797,496,0 chrXV 143727 . G T 4133.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=22.58;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4133,438,0 chrXV 143787 . C T 4189.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.9078;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=25.54;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4189,442,0 chrXV 143811 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.0523;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=25.07;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3409,354,0 chrXV 143876 . A G 2584 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=20.51;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2617,282,0 chrXV 143890 . T C 2471 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=18.86;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2504,273,0 chrXV 143915 . A G 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=126;Dels=0.00;FS=5.860;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;MQRankSum=-1.616;QD=18.34;ReadPosRankSum=2.944;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2344,252,0 chrXV 143927 . G T 2206 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;QD=16.59;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2239,228,0 chrXV 143959 . G T 2139 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=15.28;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2172,225,0 chrXV 143977 . T C 1921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.827;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;MQRankSum=0.990;QD=13.53;ReadPosRankSum=1.683;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:1954,207,0 chrXV 143987 . C T 2054 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=37.16;MQ0=0;QD=14.57;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2087,219,0 chrXV 143989 . T C 1955 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=37.16;MQ0=0;QD=13.87;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:1988,216,0 chrXV 144008 . A G 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;MQRankSum=-0.198;QD=14.91;ReadPosRankSum=1.706;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:1986,216,0 chrXV 144117 . C T 3211.99 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=16.6076;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=22.46;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3245,336,0 chrXV 144215 . G A 4268.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=23.45;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4268,465,0 chrXV 144354 . G A 4708.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.2907;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.31;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4708,487,0 chrXV 144655 . C T 5115.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.6819;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.57;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5115,529,0 chrXV 145028 . T C 1268 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=16.68;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1301,147,0 chrXV 145052 . A T 1140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.192;QD=19.66;ReadPosRankSum=2.365;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1173,123,0 chrXV 145140 . T C 615 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.78;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:69:648,69,0 chrXV 145222 . A G 140.13 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.01;SB=-5.714e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:173,18,0 chrXV 145310 . C A 915 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=24.08;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:99:948,102,0 chrXV 145331 . A G 1198 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.45;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1231,138,0 chrXV 145519 . T C 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.555;QD=24.62;ReadPosRankSum=2.406;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2815,300,0 chrXV 145551 . G A 3806.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.6411;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.54;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3806,394,0 chrXV 146203 . C T 2673 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=22.46;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2706,276,0 chrXV 146225 . G A 2339 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=22.07;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2372,243,0 chrXV 146231 . T C 2294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=3.424;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.724;QD=20.85;ReadPosRankSum=1.638;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2327,249,0 chrXV 146368 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=25.08;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2942,303,0 chrXV 146472 . G A 2516 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=26.77;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2549,264,0 chrXV 146551 . T A 2451 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.80;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2484,258,0 chrXV 146599 . G A 2237 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6954;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.80;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2270,243,0 chrXV 146782 . A G 2421 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.50;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2454,261,0 chrXV 147007 . C T 1799 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.16;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1832,189,0 chrXV 147162 . G A 1022 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.65;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1055,111,0 chrXV 147274 . T A 756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=5.0570;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.693;QD=18.90;ReadPosRankSum=1.646;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:81:789,81,0 chrXV 147504 . C T 4328.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=26.07;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4328,448,0 chrXV 147540 . G T 4503.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=26.49;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4503,474,0 chrXV 147582 . C T 3893.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=24.03;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3893,405,0 chrXV 147591 . C T 3762.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=22.80;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3762,393,0 chrXV 147687 . G A 3871.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=22.51;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3871,409,0 chrXV 147729 . A T 3877.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.5534;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=18.64;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3877,417,0 chrXV 147735 . C T 3636.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.56;MQ0=0;QD=18.36;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:3636,384,0 chrXV 147749 . A G 2987 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.18;MQ0=0;QD=16.23;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3020,327,0 chrXV 147750 . C T 2952 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.18;MQ0=0;QD=16.04;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:2985,324,0 chrXV 147783 . T C 3183 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=15.91;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3216,348,0 chrXV 147840 . A G 4361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=3.201;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=1.453;QD=23.45;ReadPosRankSum=1.676;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4361,462,0 chrXV 147891 . A C 4468.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=24.96;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4468,480,0 chrXV 147981 . G A 4965.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.1226;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=24.58;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4965,531,0 chrXV 148159 . T C 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=3.622;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=1.039;QD=23.23;ReadPosRankSum=1.712;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4088,432,0 chrXV 148176 . C T 3901.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.09;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3901,417,0 chrXV 148362 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.27;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3304,343,0 chrXV 148695 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=23.56;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3025,318,0 chrXV 148704 . C T 2772 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=21.16;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2805,297,0 chrXV 148719 . C G 2541 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=17.77;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2574,273,0 chrXV 148734 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=18.66;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2963,303,0 chrXV 148894 . A G 4916.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=24.46;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4916,528,0 chrXV 148926 . T A 4605.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=24.24;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4605,495,0 chrXV 149046 . G A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.93;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4035,415,0 chrXV 149214 . A G 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=190;Dels=0.00;FS=2.465;HaplotypeScore=3.8911;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=1.323;QD=18.57;ReadPosRankSum=2.423;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:3,187:190:99:3528,381,0 chrXV 149218 . C A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.02;FS=0.000;HaplotypeScore=7.6343;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=17.99;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3310,345,0 chrXV 149247 . G C 3923.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.23;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:3923,426,0 chrXV 149283 . T C 4416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=217;Dels=0.00;FS=2.576;HaplotypeScore=5.8588;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-0.884;QD=20.35;ReadPosRankSum=2.949;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:3,214:217:99:4416,477,0 chrXV 149394 . T C 5820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=249;Dels=0.00;FS=6.471;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.213;QD=23.37;ReadPosRankSum=2.351;SB=-3.010e+03 GT:AD:DP:GQ:PL 1/1:2,246:249:99:5820,628,0 chrXV 149706 . A T 4538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=19.6167;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.589;QD=23.39;ReadPosRankSum=1.661;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4538,469,0 chrXV 150111 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.3416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2831,297,0 chrXV 150390 . G C 1933 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1966,216,0 chrXV 150503 . A G 1777 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.69;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1810,201,0 chrXV 150543 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.65;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1913,198,0 chrXV 150554 . A G 1830 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.03;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1863,195,0 chrXV 150653 . T C 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.593;QD=23.55;ReadPosRankSum=1.637;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3462,365,0 chrXV 150803 . G A 4063.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.90;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4063,421,0 chrXV 150859 . G A 3757.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1792;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.78;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3757,388,0 chrXV 150962 . A G 5470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=228;Dels=0.00;FS=3.245;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-1.322;QD=23.99;ReadPosRankSum=1.717;SB=-2.934e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5470,589,0 chrXV 151148 . C A 4942.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=24.23;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4942,528,0 chrXV 151176 . A G 4192.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.42;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4192,442,0 chrXV 151183 . T C 4058.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.17;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4058,430,0 chrXV 151251 . T A 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=153;Dels=0.00;FS=4.443;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.645;QD=20.10;ReadPosRankSum=1.687;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3108,327,0 chrXV 151265 . A G 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.814;QD=20.41;ReadPosRankSum=1.709;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3155,336,0 chrXV 151304 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.2197;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.29;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3500,361,0 chrXV 151369 . T C 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=3.516;HaplotypeScore=10.2564;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.191;QD=22.78;ReadPosRankSum=1.652;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3963,417,0 chrXV 151709 . A T 2872 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.55;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2905,315,0 chrXV 151910 . T A 3022 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.72;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3055,330,0 chrXV 151997 . G A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.55;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3883,403,0 chrXV 152141 . G A 4004.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=20.4925;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.49;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4004,420,0 chrXV 152215 . T C 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=0.955;QD=23.95;ReadPosRankSum=1.669;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3952,420,0 chrXV 152407 . T G 3439.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=23.55;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3439,366,0 chrXV 152424 . T C 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=142;Dels=0.00;FS=9.062;HaplotypeScore=6.6600;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-1.822;QD=20.75;ReadPosRankSum=2.397;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:2979,315,0 chrXV 152922 . C T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3355,343,0 chrXV 153116 . A G 5298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=219;Dels=0.00;FS=14.617;HaplotypeScore=11.6438;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.766;QD=24.19;ReadPosRankSum=2.940;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:3,216:219:99:5298,576,0 chrXV 153180 . T G 5846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.450;QD=23.02;ReadPosRankSum=1.705;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:5846,631,0 chrXV 153262 . T C 4536.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.4340;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.91;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4536,481,0 chrXV 153279 . A T 4735.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.06;SB=-3.072e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:4735,496,0 chrXV 153317 . T C 5311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=262;Dels=0.00;FS=6.889;HaplotypeScore=15.5486;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.728;QD=20.27;ReadPosRankSum=2.402;SB=-3.113e+03 GT:AD:DP:GQ:PL 1/1:2,259:261:99:5311,588,0 chrXV 153513 . G C 4172.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.6801;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.05;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,176:181:99:4172,442,0 chrXV 153615 . T C 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.585;QD=25.03;ReadPosRankSum=1.637;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3655,379,0 chrXV 153722 . A C 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.879;HaplotypeScore=11.2997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.965;QD=23.46;ReadPosRankSum=1.709;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3519,375,0 chrXV 153761 . A G 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=154;Dels=0.00;FS=8.323;HaplotypeScore=9.4090;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.502;QD=22.75;ReadPosRankSum=2.385;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3504,378,0 chrXV 154056 . T C 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-1.354;QD=22.07;ReadPosRankSum=1.690;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3642,379,0 chrXV 154073 . G A 4039.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.19;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4039,418,0 chrXV 154165 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.55;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3258,342,0 chrXV 154180 . T C 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=140;Dels=0.00;FS=6.115;HaplotypeScore=4.1744;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.259;QD=20.82;ReadPosRankSum=2.921;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2948,309,0 chrXV 154310 . T C 4600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.0907;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.696;QD=23.59;ReadPosRankSum=1.696;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4600,490,0 chrXV 154799 . T G 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=5.822;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.538;QD=19.64;ReadPosRankSum=1.700;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2135,231,0 chrXV 154898 . A G 1035 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.512;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.314;QD=19.90;ReadPosRankSum=2.865;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,49:52:99:1068,111,0 chrXV 154988 . T C 693 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.25;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:84:726,84,0 chrXV 154995 . A T 729 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.25;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:84:762,84,0 chrXV 155098 . C A 160.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,7:8:18:193,18,0 chrXV 155221 . G A 389 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:45:422,45,0 chrXV 155276 . A T 1158 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1191,126,0 chrXV 155779 . C T 4558.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.8976;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.60;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4558,478,0 chrXV 155923 . G A 4310.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.55;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4310,457,0 chrXV 155997 . C A 3642.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.3238;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.50;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3642,379,0 chrXV 156059 . T C 2940 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2713;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.60;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2973,321,0 chrXV 156082 . A G 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.0729;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=1.358;QD=19.33;ReadPosRankSum=1.707;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2720,294,0 chrXV 156178 . G A 4091.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.5072;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.92;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4091,435,0 chrXV 156337 . T C 3601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.205;DP=161;Dels=0.00;FS=2.949;HaplotypeScore=11.3247;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.527;QD=22.37;ReadPosRankSum=2.389;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3601,393,0 chrXV 156508 . A G 4327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=191;Dels=0.00;FS=6.046;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.932;QD=22.65;ReadPosRankSum=2.879;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:4327,477,0 chrXV 156746 . A G 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=147;Dels=0.00;FS=2.722;HaplotypeScore=11.6441;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.345;QD=24.41;ReadPosRankSum=2.399;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3588,378,0 chrXV 156784 . A G 3624.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.94;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3624,390,0 chrXV 156847 . T C 2172 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.93;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2205,249,0 chrXV 156898 . C T 2372 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.81;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2405,255,0 chrXV 156979 . T C 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=108;Dels=0.00;FS=5.423;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.561;QD=24.19;ReadPosRankSum=2.879;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2646,285,0 chrXV 157101 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2950,303,0 chrXV 157207 . A G 4207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=4.651;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.234;QD=23.63;ReadPosRankSum=1.693;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4207,456,0 chrXV 157219 . T C 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=166;Dels=0.00;FS=2.676;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.846;QD=22.13;ReadPosRankSum=2.420;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:3674,402,0 chrXV 158074 . T C 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=179;Dels=0.00;FS=2.985;HaplotypeScore=13.4705;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.465;QD=23.41;ReadPosRankSum=2.394;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:2,175:179:99:4190,436,0 chrXV 158239 . A G 5570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=242;Dels=0.00;FS=6.755;HaplotypeScore=18.6699;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.830;QD=23.02;ReadPosRankSum=2.409;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:2,239:242:99:5570,598,0 chrXV 158453 . T C 5108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=220;Dels=0.00;FS=3.767;HaplotypeScore=19.5223;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.862;QD=23.22;ReadPosRankSum=1.716;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:5108,538,0 chrXV 158575 . C T 5001.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=17.4161;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=26.60;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:5001,520,0 chrXV 158650 . A G 4108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=180;Dels=0.00;FS=3.415;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.097;QD=22.82;ReadPosRankSum=1.694;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4108,438,0 chrXV 158717 . C T 4624.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.01;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4624,490,0 chrXV 158754 . A C 4224.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.47;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4224,453,0 chrXV 158776 . T C 3982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=172;Dels=0.00;FS=3.114;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.630;QD=23.15;ReadPosRankSum=1.691;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3982,438,0 chrXV 158838 . G A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.52;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3355,357,0 chrXV 158905 . G T 3075 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.3440;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.65;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3108,316,0 chrXV 158969 . C T 2278 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.64;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2311,249,0 chrXV 159062 . G T 1301 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=17.58;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1334,141,0 chrXV 159066 . G A 1254 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=17.91;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1287,135,0 chrXV 159092 . G A 1323 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=16.13;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,78:82:99:1356,147,0 chrXV 159369 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.1647;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.93;SB=-3.401e+01 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3853,397,0 chrXV 159638 . C T 4180.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=23.35;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4180,433,0 chrXV 159655 . C T 3889.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.22;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3889,403,0 chrXV 159827 . A G 8059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=360;Dels=0.00;FS=6.433;HaplotypeScore=16.6028;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.326;QD=22.39;ReadPosRankSum=2.374;SB=-4.546e+03 GT:AD:DP:GQ:PL 1/1:2,354:360:99:8059,886,0 chrXV 160139 . G A 2915 SnpCluster AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=0;QD=12.51;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:2948,333,0 chrXV 160141 . T C 2362 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.743;DP=230;Dels=0.00;FS=21.750;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=26.93;MQ0=0;MQRankSum=-1.944;QD=10.27;ReadPosRankSum=5.111;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:10,218:230:99:2395,282,0 chrXV 160142 . G T 2299 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.655;DP=225;Dels=0.00;FS=21.490;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=0;MQRankSum=-1.585;QD=10.22;ReadPosRankSum=5.239;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:11,214:225:99:2332,276,0 chrXV 160153 . G C 2174 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.95;MQ0=4;QD=9.06;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:2207,255,0 chrXV 160154 . G A 2177 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.95;MQ0=4;QD=9.07;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:2210,252,0 chrXV 160163 . G A 1749 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=20.67;MQ0=17;QD=5.83;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,298:300:99:1782,204,0 chrXV 160213 . G C 7648.01 filter AC=2;AF=1.00;AN=2;DP=505;Dels=0.00;FS=0.000;HaplotypeScore=22.9695;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=16;QD=15.14;SB=-3.257e+03 GT:AD:DP:GQ:PL 1/1:0,502:505:99:7648,823,0 chrXV 160403 . G A 10375.01 filter AC=2;AF=1.00;AN=2;DP=518;Dels=0.00;FS=0.000;HaplotypeScore=15.1130;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=19;QD=20.03;SB=-6.298e+03 GT:AD:DP:GQ:PL 1/1:0,515:518:99:10375,1090,0 chrXV 160688 . G A 4693.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.47;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4693,481,0 chrXV 161134 . T A 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.1563;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.081;QD=24.36;ReadPosRankSum=1.669;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4019,415,0 chrXV 161464 . C T 4328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.397;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.7980;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=-1.113;QD=20.91;ReadPosRankSum=0.477;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4328,440,0 chrXV 161473 . T C 3713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.056;DP=201;Dels=0.00;FS=4.699;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=-0.140;QD=18.47;ReadPosRankSum=4.056;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:6,193:200:99:3713,402,0 chrXV 161487 . A G 3499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=5.752;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=-1.382;QD=18.51;ReadPosRankSum=1.714;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3499,369,0 chrXV 161509 . T C 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.2169;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=0.372;QD=17.08;ReadPosRankSum=1.676;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3227,351,0 chrXV 161768 . T G 4760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=217;Dels=0.00;FS=3.929;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.991;QD=21.94;ReadPosRankSum=1.684;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:1,214:217:99:4760,516,0 chrXV 161853 . A G 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=6.160;HaplotypeScore=13.6136;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.459;QD=20.20;ReadPosRankSum=2.403;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3224,360,0 chrXV 161975 . T C 3732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.1520;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-0.644;QD=21.70;ReadPosRankSum=1.712;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3732,402,0 chrXV 161986 . C T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=8.3078;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=20.34;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3458,369,0 chrXV 162027 . C T 3226.07 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=19.09;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3259,337,0 chrXV 162043 . T C 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;MQRankSum=-1.645;QD=16.58;ReadPosRankSum=1.710;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:2703,285,0 chrXV 162065 . C T 2895 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=18.56;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2928,306,0 chrXV 162197 . G T 2982 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.45;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3015,309,0 chrXV 162352 . T C 4087.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.9312;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.33;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4087,435,0 chrXV 162379 . G A 3688.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.64;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3688,387,0 chrXV 162419 . G C 2925 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.3312;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.51;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2958,318,0 chrXV 162503 . A G 4033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=188;Dels=0.00;FS=3.877;HaplotypeScore=11.3885;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.682;QD=21.45;ReadPosRankSum=1.695;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4033,429,0 chrXV 162766 . C T 7573.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=38.1956;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.74;SB=-3.043e+03 GT:AD:DP:GQ:PL 1/1:0,316:319:99:7573,802,0 chrXV 163253 . T C 5556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=247;Dels=0.00;FS=7.348;HaplotypeScore=21.9511;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.075;QD=22.49;ReadPosRankSum=2.409;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:2,242:247:99:5556,586,0 chrXV 163510 . T C 5416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.184;DP=247;Dels=0.00;FS=8.707;HaplotypeScore=18.6264;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.046;QD=21.93;ReadPosRankSum=3.354;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:4,242:247:99:5416,591,0 chrXV 163567 . G A 6535.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=18.9279;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.38;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,265:268:99:6535,706,0 chrXV 163690 . C T 7837.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=12.0219;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=22.20;SB=-3.642e+03 GT:AD:DP:GQ:PL 1/1:0,351:353:99:7837,838,0 chrXV 163702 . T C 7671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.331;DP=348;Dels=0.00;FS=8.081;HaplotypeScore=11.6159;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.274;QD=22.04;ReadPosRankSum=3.396;SB=-3.811e+03 GT:AD:DP:GQ:PL 1/1:4,342:348:99:7671,808,0 chrXV 163748 . G A 7004.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=23.66;SB=-3.595e+03 GT:AD:DP:GQ:PL 1/1:0,296:296:99:7004,727,0 chrXV 163776 . C G 6458.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=4.2559;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.50;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:0,281:287:99:6458,688,0 chrXV 163799 . G A 6636.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=9.8145;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.27;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:0,295:298:99:6636,694,0 chrXV 163912 . A T 5666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=18.7095;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.342;QD=18.52;ReadPosRankSum=1.721;SB=-3.286e+03 GT:AD:DP:GQ:PL 1/1:1,305:306:99:5666,601,0 chrXV 163943 . A C 5036.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=2.4993;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=19.60;SB=-3.201e+03 GT:AD:DP:GQ:PL 1/1:0,252:257:99:5036,535,0 chrXV 163945 . A G 5025.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=5.0500;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=19.48;SB=-3.286e+03 GT:AD:DP:GQ:PL 1/1:0,255:258:99:5025,538,0 chrXV 164284 . T A 3661.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.4744;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3661,396,0 chrXV 164491 . G A 5665.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.4293;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=26.11;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5665,589,0 chrXV 164632 . C T 4695.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.0574;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.90;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4695,487,0 chrXV 164683 . C T 5738.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=24.84;SB=-3.166e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5738,592,0 chrXV 164708 . A G 5128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-1.094;QD=21.37;ReadPosRankSum=1.718;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:1,239:240:99:5128,541,0 chrXV 164728 . A G 4511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=246;Dels=0.00;FS=3.014;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=-0.096;QD=18.34;ReadPosRankSum=2.409;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:2,242:246:99:4511,483,0 chrXV 164737 . T A 4685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=241;Dels=0.00;FS=6.222;HaplotypeScore=10.1288;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-1.482;QD=19.44;ReadPosRankSum=2.358;SB=-3.233e+03 GT:AD:DP:GQ:PL 1/1:2,239:241:99:4685,490,0 chrXV 164935 . T C 4806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=212;Dels=0.00;FS=6.380;HaplotypeScore=15.8215;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.672;QD=22.67;ReadPosRankSum=2.391;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:2,208:212:99:4806,537,0 chrXV 164993 . T G 5126.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=8.4718;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.63;SB=-3.122e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5126,550,0 chrXV 165025 . A G 6614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=284;Dels=0.00;FS=3.499;HaplotypeScore=16.3848;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.069;QD=23.29;ReadPosRankSum=1.707;SB=-3.308e+03 GT:AD:DP:GQ:PL 1/1:1,281:284:99:6614,709,0 chrXV 165055 . T A 7641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=311;Dels=0.00;FS=2.870;HaplotypeScore=15.2535;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.108;QD=24.57;ReadPosRankSum=2.386;SB=-3.471e+03 GT:AD:DP:GQ:PL 1/1:2,309:311:99:7641,805,0 chrXV 165133 . T C 5523.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=12.1138;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.11;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5523,595,0 chrXV 165232 . T C 4929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=219;Dels=0.00;FS=6.329;HaplotypeScore=10.9215;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=1.416;QD=22.51;ReadPosRankSum=1.716;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4929,546,0 chrXV 165358 . T C 3148 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=16.0836;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.13;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3181,327,0 chrXV 165453 . A G 1505 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=19.29;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1538,165,0 chrXV 165456 . A G 1480 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=20.00;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1513,162,0 chrXV 165488 . T C 1703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=93;Dels=0.00;FS=6.163;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=-0.172;QD=18.31;ReadPosRankSum=2.344;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1736,183,0 chrXV 165497 . T C 1800 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=18.95;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1833,195,0 chrXV 165557 . G A 2688 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.79;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2721,282,0 chrXV 165639 . A G 2395 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=23.71;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2428,261,0 chrXV 165707 . A G 3850.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=24.37;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3850,408,0 chrXV 165725 . G C 3796.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=23.15;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3796,411,0 chrXV 165776 . T G 2938 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=21.29;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2971,333,0 chrXV 165827 . C T 3071 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=23.09;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3104,327,0 chrXV 165915 . G A 4529.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.7415;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=23.84;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4529,472,0 chrXV 165923 . C T 4170.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.1445;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=23.04;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4170,430,0 chrXV 165953 . G A 2960 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.01;FS=0.000;HaplotypeScore=6.8340;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=16.72;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:2993,309,0 chrXV 165998 . A G 2313 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=3.965;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;MQRankSum=-1.449;QD=15.63;ReadPosRankSum=1.709;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2346,249,0 chrXV 166007 . A G 2163 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=3.932;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;MQRankSum=-0.739;QD=15.90;ReadPosRankSum=1.707;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2196,237,0 chrXV 166008 . A G 2173 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;QD=15.98;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2206,234,0 chrXV 166009 . A C 2197 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.42;MQ0=0;QD=16.27;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2230,234,0 chrXV 166055 . T C 2082 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=16.02;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2115,234,0 chrXV 166076 . A G 2003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;MQRankSum=-1.296;QD=15.77;ReadPosRankSum=1.705;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2036,216,0 chrXV 166088 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=18.45;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2229,234,0 chrXV 166163 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=20.68;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2825,288,0 chrXV 166172 . G A 2856 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=19.83;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,140:144:99:2889,303,0 chrXV 166324 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.7540;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.34;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2787,285,0 chrXV 166482 . G A 3539.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.98;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3539,372,0 chrXV 166700 . A T 4614.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2737;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.03;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4614,492,0 chrXV 166989 . G A 2442 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8158;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=23.71;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2475,255,0 chrXV 167021 . A T 2359 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=23.83;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2392,249,0 chrXV 167078 . A T 2270 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=18.46;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2303,237,0 chrXV 167081 . T G 2232 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=18.00;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2265,249,0 chrXV 167102 . T C 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;MQRankSum=-0.998;QD=16.83;ReadPosRankSum=1.703;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2019,216,0 chrXV 167109 . T C 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;MQRankSum=-0.243;QD=16.52;ReadPosRankSum=1.671;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1916,207,0 chrXV 167129 . C T 1737 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=16.39;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1770,186,0 chrXV 167270 . A T 4287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=170;Dels=0.00;FS=6.052;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=0.663;QD=25.22;ReadPosRankSum=2.959;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:4287,442,0 chrXV 167344 . T A 4198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.993;QD=25.60;ReadPosRankSum=1.605;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4198,436,0 chrXV 167483 . C T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=24.37;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3461,352,0 chrXV 167627 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=22.02;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3303,340,0 chrXV 167650 . T C 2751 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=6.892;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;MQRankSum=-0.184;QD=20.68;ReadPosRankSum=1.706;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2784,294,0 chrXV 167656 . A G 2406 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.25;MQ0=0;MQRankSum=-2.860;QD=19.72;ReadPosRankSum=2.893;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2439,264,0 chrXV 167658 . T C 2219 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;QD=18.97;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2252,258,0 chrXV 167659 . A G 2341 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;QD=20.01;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2374,258,0 chrXV 167688 . A T 1738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.98;MQ0=0;MQRankSum=0.157;QD=19.75;ReadPosRankSum=1.693;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1771,186,0 chrXV 167717 . A C 1127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=3.085;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;MQRankSum=1.321;QD=19.10;ReadPosRankSum=1.674;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1160,123,0 chrXV 167735 . T C 1196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=67;Dels=0.00;FS=9.139;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;MQRankSum=-0.622;QD=17.85;ReadPosRankSum=3.321;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:4,63:67:99:1229,129,0 chrXV 167761 . A G 1505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=7.990;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;MQRankSum=-0.702;QD=20.90;ReadPosRankSum=2.347;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1538,168,0 chrXV 167794 . A G 1787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.955;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=0.100;QD=20.31;ReadPosRankSum=1.653;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1820,192,0 chrXV 167815 . C G 2069 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=21.11;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2102,228,0 chrXV 167840 . G C 2298 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=22.53;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2331,252,0 chrXV 167922 . C T 1733 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=20.39;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1766,183,0 chrXV 167933 . C T 1873 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.9227;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=19.11;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1906,201,0 chrXV 167975 . C T 2257 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=18.81;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2290,237,0 chrXV 167980 . G C 2480 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.5678;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=17.97;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2513,267,0 chrXV 167983 . T C 2527 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=141;Dels=0.00;FS=5.272;HaplotypeScore=2.7510;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;MQRankSum=-1.621;QD=17.92;ReadPosRankSum=3.359;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:4,137:141:99:2560,273,0 chrXV 168074 . A G 3449.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.46;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3449,366,0 chrXV 168202 . T C 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=177;Dels=0.00;FS=6.398;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;MQRankSum=-0.368;QD=21.30;ReadPosRankSum=2.422;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3770,411,0 chrXV 168209 . G A 4091.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=23.11;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4091,427,0 chrXV 168263 . A G 3446.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.01;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3446,366,0 chrXV 168294 . T C 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.791;QD=24.13;ReadPosRankSum=1.712;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4175,453,0 chrXV 168347 . C G 4808.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=22.90;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4808,531,0 chrXV 168382 . A G 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=3.785;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;MQRankSum=-0.466;QD=19.88;ReadPosRankSum=1.682;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4136,436,0 chrXV 168383 . A G 4117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=206;Dels=0.00;FS=11.407;HaplotypeScore=1.7172;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;MQRankSum=-1.240;QD=19.99;ReadPosRankSum=2.936;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:3,202:206:99:4117,430,0 chrXV 168404 . A C 3218.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=16.85;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3251,351,0 chrXV 168429 . G A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=17.15;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3379,360,0 chrXV 168445 . T C 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;MQRankSum=-0.270;QD=17.55;ReadPosRankSum=1.680;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:3492,366,0 chrXV 168455 . A G 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=202;Dels=0.00;FS=3.716;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;MQRankSum=-1.490;QD=18.11;ReadPosRankSum=1.715;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:3658,384,0 chrXV 168532 . T C 5466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=231;Dels=0.00;FS=6.078;HaplotypeScore=10.3481;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-1.956;QD=23.66;ReadPosRankSum=2.417;SB=-2.932e+03 GT:AD:DP:GQ:PL 1/1:2,227:231:99:5466,586,0 chrXV 168708 . C T 5132.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.8338;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.91;SB=-2.869e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5132,552,0 chrXV 168744 . T C 4855.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.7865;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.07;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4855,534,0 chrXV 168885 . C T 5180.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.2140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:5180,541,0 chrXV 169152 . A G 4149.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.95;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4149,447,0 chrXV 169251 . T C 6421.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=19.1875;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.96;SB=-3.204e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:6421,688,0 chrXV 169333 . T C 4646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=209;Dels=0.00;FS=3.184;HaplotypeScore=13.4743;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.732;QD=22.23;ReadPosRankSum=1.664;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:1,203:209:99:4646,490,0 chrXV 169359 . G A 4457.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=24.09;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4457,454,0 chrXV 169572 . C T 4794.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=20.4127;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.34;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4794,499,0 chrXV 169704 . A G 4064.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.6914;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.58;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,176:180:99:4064,447,0 chrXV 169869 . C T 1778 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.09;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1811,192,0 chrXV 170103 . T C 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-1.538;QD=20.98;ReadPosRankSum=2.407;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2467,270,0 chrXV 170107 . C T 2593 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=21.25;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2626,270,0 chrXV 170126 . C T 3213.98 filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.3516;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=21.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3247,339,0 chrXV 170199 . A G 2721 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.43;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2754,306,0 chrXV 170344 . C T 5996.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=23.61;SB=-3.598e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5996,613,0 chrXV 170368 . T C 5257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=11.3562;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.821;QD=20.86;ReadPosRankSum=1.704;SB=-3.223e+03 GT:AD:DP:GQ:PL 1/1:1,250:252:99:5257,562,0 chrXV 170583 . T C 3951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=4.817;HaplotypeScore=13.0071;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.952;QD=20.37;ReadPosRankSum=1.696;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,190:194:99:3951,420,0 chrXV 170671 . T C 3070 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.2038;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.33;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3103,342,0 chrXV 170746 . A T 3738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=163;Dels=0.00;FS=3.091;HaplotypeScore=11.9124;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.095;QD=22.93;ReadPosRankSum=1.668;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3738,396,0 chrXV 170921 . A G 3217.04 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.0622;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.16;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3250,345,0 chrXV 170927 . A C 2985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.806;DP=151;Dels=0.00;FS=11.216;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.738;QD=19.77;ReadPosRankSum=2.913;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:3018,327,0 chrXV 171150 . T C 4511.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.0789;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.56;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4511,481,0 chrXV 171213 . G A 6294.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=16.4957;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=25.08;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:6294,658,0 chrXV 171276 . C G 5255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=254;Dels=0.00;FS=3.424;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;MQRankSum=-1.458;QD=20.69;ReadPosRankSum=1.705;SB=-3.152e+03 GT:AD:DP:GQ:PL 1/1:1,252:254:99:5255,579,0 chrXV 171277 . C G 5473.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=21.55;SB=-3.186e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5473,579,0 chrXV 171288 . T C 4780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;MQRankSum=-1.129;QD=19.35;ReadPosRankSum=1.704;SB=-3.099e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:4780,528,0 chrXV 171306 . C T 4446.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.1626;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=19.25;SB=-2.939e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4446,460,0 chrXV 171511 . A C 4004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.204;DP=212;Dels=0.00;FS=8.848;HaplotypeScore=4.9679;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;MQRankSum=-1.418;QD=18.89;ReadPosRankSum=3.411;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:4,207:212:99:4004,441,0 chrXV 171515 . G A 3954.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.1689;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=19.67;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3954,412,0 chrXV 171745 . C T 4139.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=18.73;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4139,436,0 chrXV 171973 . T C 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=199;Dels=0.00;FS=9.116;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=0.253;QD=19.51;ReadPosRankSum=2.425;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:3883,417,0 chrXV 171981 . C T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=19.78;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,185:190:99:3759,399,0 chrXV 171985 . C G 3801.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=21.00;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3801,399,0 chrXV 172515 . T C 5285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=246;Dels=0.00;FS=3.025;HaplotypeScore=17.6236;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-1.192;QD=21.48;ReadPosRankSum=2.380;SB=-3.092e+03 GT:AD:DP:GQ:PL 1/1:2,244:246:99:5285,570,0 chrXV 172581 . T C 5492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=248;Dels=0.00;FS=5.971;HaplotypeScore=16.5794;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.458;QD=22.15;ReadPosRankSum=2.947;SB=-3.000e+03 GT:AD:DP:GQ:PL 1/1:3,245:248:99:5492,586,0 chrXV 172704 . C A 4777.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=14.2187;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=19.99;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:4777,496,0 chrXV 172752 . C T 4687.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.5989;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.21;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:4687,484,0 chrXV 172768 . G A 4501.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.74;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4501,477,0 chrXV 172825 . C T 5354.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=13.8913;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.03;SB=-3.143e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5354,565,0 chrXV 172956 . A G 3909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=175;Dels=0.00;FS=5.850;HaplotypeScore=11.3171;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=0.705;QD=22.34;ReadPosRankSum=2.902;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:3909,426,0 chrXV 173022 . A G 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=182;Dels=0.00;FS=2.751;HaplotypeScore=12.4840;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.973;QD=23.13;ReadPosRankSum=2.422;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:2,176:182:99:4209,456,0 chrXV 173080 . G A 4276.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=23.89;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4276,451,0 chrXV 173105 . A T 3637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=165;Dels=0.00;FS=3.037;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=-0.487;QD=22.04;ReadPosRankSum=2.420;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3637,376,0 chrXV 173112 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=162;Dels=0.00;FS=6.102;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=0.725;QD=21.30;ReadPosRankSum=2.419;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3450,363,0 chrXV 173127 . T C 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=148;Dels=0.00;FS=6.290;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-0.125;QD=20.89;ReadPosRankSum=2.416;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3124,342,0 chrXV 173169 . T C 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=131;Dels=0.00;FS=3.219;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=1.083;QD=20.85;ReadPosRankSum=1.678;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,127:131:99:2765,297,0 chrXV 173202 . A G 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.721;QD=22.81;ReadPosRankSum=1.707;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3181,336,0 chrXV 173326 . A G 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=131;Dels=0.00;FS=5.460;HaplotypeScore=11.8421;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-1.520;QD=22.70;ReadPosRankSum=2.946;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:3,127:131:99:3007,330,0 chrXV 173391 . A G 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=3.222;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=1.567;QD=22.45;ReadPosRankSum=1.705;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2862,306,0 chrXV 173762 . T C 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=3.314;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.243;QD=22.72;ReadPosRankSum=1.690;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3703,399,0 chrXV 173907 . G A 6304.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.05;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:6304,652,0 chrXV 174201 . A G 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.7405;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-0.748;QD=24.63;ReadPosRankSum=1.691;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4162,441,0 chrXV 174364 . C T 3191 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.33;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3224,336,0 chrXV 174465 . G T 3876.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.2078;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=22.40;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3876,400,0 chrXV 174472 . C T 3600.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.0331;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=21.30;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3600,372,0 chrXV 174675 . T C 2678 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=20.60;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2711,291,0 chrXV 174678 . T C 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.543;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-1.649;QD=19.53;ReadPosRankSum=2.145;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2553,285,0 chrXV 175135 . A G 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=0.851;QD=21.33;ReadPosRankSum=1.702;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2486,267,0 chrXV 175142 . C T 2466 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.63;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2499,255,0 chrXV 175290 . T C 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.701;QD=24.53;ReadPosRankSum=1.670;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2780,297,0 chrXV 175332 . A G 2845 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=24.74;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2878,309,0 chrXV 175458 . A C 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=145;Dels=0.00;FS=11.010;HaplotypeScore=8.0855;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-1.796;QD=20.21;ReadPosRankSum=2.838;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:3,140:145:99:2963,315,0 chrXV 175470 . T C 3210.99 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.30;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3244,336,0 chrXV 175512 . C T 3064 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.28;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3097,327,0 chrXV 175584 . G A 3607.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.83;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3607,373,0 chrXV 175588 . A G 3575.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.54;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3575,378,0 chrXV 175815 . G C 4504.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.7678;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.30;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:1,198:202:99:4504,480,0 chrXV 176091 . G A 4294.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.84;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4294,439,0 chrXV 176117 . C T 4481.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.98;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4481,469,0 chrXV 176217 . G A 4274.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.6450;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=23.74;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4274,439,0 chrXV 176239 . G T 3993.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=24.65;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,158:162:99:3993,409,0 chrXV 176268 . A T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=24.31;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3355,346,0 chrXV 176298 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.6383;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.681;QD=23.81;ReadPosRankSum=1.708;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3452,366,0 chrXV 176348 . A G 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=129;Dels=0.00;FS=5.232;HaplotypeScore=9.5029;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.414;QD=24.37;ReadPosRankSum=2.946;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:3177,330,0 chrXV 176425 . C T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=25.76;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3271,334,0 chrXV 176441 . C T 2918 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=23.53;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2951,315,0 chrXV 176466 . C T 2206 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=19.18;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2239,231,0 chrXV 176469 . C T 2132 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.70;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2165,231,0 chrXV 176547 . C T 2446 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.75;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2479,252,0 chrXV 176616 . G A 2903 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.8071;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.50;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2936,321,0 chrXV 177015 . A G 6966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=298;Dels=0.00;FS=6.022;HaplotypeScore=19.9104;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.375;QD=23.38;ReadPosRankSum=2.895;SB=-3.471e+03 GT:AD:DP:GQ:PL 1/1:3,294:298:99:6966,765,0 chrXV 177067 . T G 6790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=276;Dels=0.00;FS=3.565;HaplotypeScore=17.8377;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.031;QD=24.60;ReadPosRankSum=1.707;SB=-3.305e+03 GT:AD:DP:GQ:PL 1/1:1,274:276:99:6790,724,0 chrXV 177226 . A G 5049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=237;Dels=0.00;FS=2.827;HaplotypeScore=18.1574;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.538;QD=21.30;ReadPosRankSum=2.376;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:2,233:237:99:5049,546,0 chrXV 177336 . C T 3718.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.5852;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.99;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3718,390,0 chrXV 177351 . T C 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=4.387;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.971;QD=19.80;ReadPosRankSum=1.692;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3426,378,0 chrXV 177495 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.20;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3291,351,0 chrXV 177738 . G A 4337.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=16.1995;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.09;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4337,442,0 chrXV 177798 . T C 4611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=192;Dels=0.00;FS=9.151;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.059;QD=24.02;ReadPosRankSum=3.341;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:4,187:192:99:4611,495,0 chrXV 178021 . C T 4079.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=24.43;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4079,412,0 chrXV 178159 . C T 4573.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4573,475,0 chrXV 178287 . A G 3851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=178;Dels=0.00;FS=3.135;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.184;QD=21.63;ReadPosRankSum=1.634;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3851,423,0 chrXV 178296 . C T 4273.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5186;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=23.48;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4273,442,0 chrXV 178440 . T C 3748.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.72;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3748,411,0 chrXV 178474 . T C 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=160;Dels=0.00;FS=7.755;HaplotypeScore=11.2879;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.848;QD=23.41;ReadPosRankSum=2.418;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3745,394,0 chrXV 178587 . G A 2624 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.33;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2657,285,0 chrXV 178731 . C T 3552.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.7704;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3552,370,0 chrXV 179031 . T C 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.6582;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.948;QD=22.35;ReadPosRankSum=1.682;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:3139,333,0 chrXV 179481 . C T 2701 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.89;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2734,285,0 chrXV 179760 . C T 4177.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=9.0268;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.14;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4177,439,0 chrXV 179850 . A G 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=185;Dels=0.00;FS=4.347;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.713;QD=24.02;ReadPosRankSum=1.713;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4443,477,0 chrXV 180028 . A G 5993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=255;Dels=0.00;FS=6.067;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.949;QD=23.50;ReadPosRankSum=2.933;SB=-3.468e+03 GT:AD:DP:GQ:PL 1/1:3,252:255:99:5993,634,0 chrXV 180056 . A C 5443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=242;Dels=0.00;FS=3.025;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-1.075;QD=22.49;ReadPosRankSum=2.409;SB=-3.235e+03 GT:AD:DP:GQ:PL 1/1:2,239:242:99:5443,583,0 chrXV 180123 . G C 4434.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=23.71;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4434,469,0 chrXV 180159 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=0.117;QD=22.14;ReadPosRankSum=1.709;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3276,351,0 chrXV 180162 . C T 3319.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=22.13;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3319,348,0 chrXV 180177 . G A 3161 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=20.39;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3194,336,0 chrXV 180210 . C T 3280.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=21.58;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3280,339,0 chrXV 180228 . T G 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=169;Dels=0.00;FS=7.946;HaplotypeScore=7.1958;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=0.298;QD=20.22;ReadPosRankSum=2.391;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3418,375,0 chrXV 180534 . A G 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.2214;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.664;QD=22.35;ReadPosRankSum=1.698;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,100:103:99:2335,249,0 chrXV 180685 . C T 2482 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.77;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2515,261,0 chrXV 180968 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.4930;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.74;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3058,313,0 chrXV 181062 . G A 2502 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.5742;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.76;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2535,264,0 chrXV 181290 . G A 4475.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.4186;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.80;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4475,460,0 chrXV 181326 . C G 4055.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.04;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4055,438,0 chrXV 181433 . C T 2630 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.3967;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=21.38;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2663,273,0 chrXV 181436 . T C 2337 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=19.81;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2370,258,0 chrXV 181452 . T A 2890 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.25;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2923,297,0 chrXV 181602 . C A 2097 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=86.6857;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=20.76;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2130,225,0 chrXV 181614 . G A 1768 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=82.8323;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;QD=19.43;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1801,189,0 chrXV 181640 . A G 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=4.160;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;MQRankSum=-1.208;QD=15.85;ReadPosRankSum=1.692;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1396,150,0 chrXV 181747 . T C 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.884;DP=133;Dels=0.00;FS=10.895;HaplotypeScore=13.7707;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.437;QD=21.27;ReadPosRankSum=4.113;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:6,126:133:99:2862,306,0 chrXV 181856 . T C 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=164;Dels=0.00;FS=5.438;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;MQRankSum=-0.810;QD=20.52;ReadPosRankSum=2.908;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3366,360,0 chrXV 181861 . A G 3362.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=20.88;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3362,360,0 chrXV 181960 . A G 4685.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.27;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4685,493,0 chrXV 182074 . A G 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-1.147;QD=21.37;ReadPosRankSum=1.710;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3312,363,0 chrXV 182089 . A G 3391.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=21.06;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3391,366,0 chrXV 182185 . T C 4021.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.38;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:4021,429,0 chrXV 182299 . T C 4239.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.81;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4239,456,0 chrXV 182374 . C T 4017.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.25;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4017,421,0 chrXV 182386 . C T 4097.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.1455;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.80;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4097,430,0 chrXV 182946 . T C 4972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=225;Dels=0.00;FS=2.884;HaplotypeScore=17.1321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.226;QD=22.10;ReadPosRankSum=2.417;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:2,221:225:99:4972,543,0 chrXV 183788 . A G 2139 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2172,237,0 chrXV 184074 . G T 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=3.689;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.843;QD=24.18;ReadPosRankSum=1.208;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3699,385,0 chrXV 184291 . A C 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.279;QD=23.80;ReadPosRankSum=1.709;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3689,393,0 chrXV 185473 . C T 2982 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3015,312,0 chrXV 185951 . T G 2375 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.28;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2408,270,0 chrXV 186481 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.9517;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3117,333,0 chrXV 189499 . G A 1284 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.75;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1317,138,0 chrXV 189700 . T A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.0055;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=25.45;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3309,337,0 chrXV 193911 . C T 6517.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=18.0753;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.41;SB=-3.194e+03 GT:AD:DP:GQ:PL 1/1:0,263:267:99:6517,667,0 chrXV 194198 . T C 3564.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3564,399,0 chrXV 194515 . A G 5353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.967;DP=216;Dels=0.00;FS=10.176;HaplotypeScore=11.7312;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.145;QD=24.78;ReadPosRankSum=2.949;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:3,212:216:99:5353,568,0 chrXV 194759 . G A 4187.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.51;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4187,456,0 chrXV 194853 . A G 3151 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=11.4752;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.94;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3184,336,0 chrXV 195091 . A G 4706.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.2738;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.51;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4706,487,0 chrXV 195644 . A C 6081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=249;Dels=0.00;FS=3.531;HaplotypeScore=16.7122;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.712;QD=24.42;ReadPosRankSum=1.620;SB=-3.073e+03 GT:AD:DP:GQ:PL 1/1:1,247:249:99:6081,640,0 chrXV 196663 . G T 2174 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=9.8868;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.42;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,110:117:99:2207,237,0 chrXV 197158 . A T 887 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:920,99,0 chrXV 199186 . T C 5256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=17.5187;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.130;QD=22.66;ReadPosRankSum=1.686;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:1,226:232:99:5256,579,0 chrXV 199322 . G A 4719.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.58;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4719,507,0 chrXV 199391 . G A 4360.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.8187;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.59;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4360,463,0 chrXV 201792 . T C 4615.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.7831;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.08;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4615,490,0 chrXV 202012 . C T 7296.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=18.0986;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.57;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,296:297:99:7296,766,0 chrXV 202087 . C T 6664.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=17.4251;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.63;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:6664,724,0 chrXV 202368 . C T 5124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.772;QD=22.09;ReadPosRankSum=1.342;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:5124,541,0 chrXV 203132 . C T 6207.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=22.1767;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.09;SB=-3.147e+03 GT:AD:DP:GQ:PL 1/1:0,279:281:99:6207,637,0 chrXV 203233 . A G 5290.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.27;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:5290,568,0 chrXV 203284 . A G 5279.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=16.2098;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.18;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5279,579,0 chrXV 203947 . T C 5929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=252;Dels=0.00;FS=3.028;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.248;QD=23.53;ReadPosRankSum=2.381;SB=-3.416e+03 GT:AD:DP:GQ:PL 1/1:2,250:252:99:5929,634,0 chrXV 204722 . C T 1268 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.88;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1301,135,0 chrXV 204903 . G A 3191 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.8235;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=25.33;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3224,339,0 chrXV 205095 . T A 3827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=3.479;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-1.496;QD=21.74;ReadPosRankSum=1.653;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3827,400,0 chrXV 205106 . T A 3712.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=21.71;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3712,382,0 chrXV 205126 . T C 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-1.390;QD=20.73;ReadPosRankSum=1.712;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3566,372,0 chrXV 205234 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=155;Dels=0.00;FS=3.038;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-1.023;QD=20.81;ReadPosRankSum=2.354;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3258,360,0 chrXV 205237 . T A 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.038;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-0.235;QD=22.20;ReadPosRankSum=1.710;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3441,352,0 chrXV 205475 . C T 3629.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=22.40;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3629,384,0 chrXV 205496 . G A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.1388;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=23.47;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3825,397,0 chrXV 205541 . A T 3616.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.4878;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.63;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3616,379,0 chrXV 205574 . C T 4425.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.34;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4425,463,0 chrXV 205723 . C G 4107.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.5780;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.20;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,181:185:99:4107,433,0 chrXV 205739 . C T 4095.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.3110;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.90;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4095,432,0 chrXV 205799 . C T 4338.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.59;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4338,448,0 chrXV 205904 . T A 2535 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.28;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2568,264,0 chrXV 205985 . T C 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=126;Dels=0.01;FS=5.336;HaplotypeScore=18.6189;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=1.366;QD=20.70;ReadPosRankSum=1.704;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2641,276,0 chrXV 206166 . T A 6322.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=27.61;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,229:229:99:6322,640,0 chrXV 206259 . T A 3949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-1.399;QD=22.83;ReadPosRankSum=2.194;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3949,412,0 chrXV 206268 . A G 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.019;QD=21.25;ReadPosRankSum=1.674;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3782,414,0 chrXV 206718 . A G 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.315;DP=183;Dels=0.00;FS=8.170;HaplotypeScore=16.6376;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.723;QD=19.52;ReadPosRankSum=3.382;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:4,178:183:99:3573,390,0 chrXV 206970 . T C 4391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.760;QD=22.40;ReadPosRankSum=1.679;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4391,483,0 chrXV 206985 . A G 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=190;Dels=0.00;FS=6.521;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-1.274;QD=20.96;ReadPosRankSum=2.384;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:2,186:190:99:3983,423,0 chrXV 207058 . T C 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=147;Dels=0.00;FS=3.131;HaplotypeScore=16.7748;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.024;QD=21.37;ReadPosRankSum=1.637;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3174,336,0 chrXV 207397 . G A 4691.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.85;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4691,493,0 chrXV 207408 . C T 5206.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.60;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5206,541,0 chrXV 208002 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9110;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.38;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2570,273,0 chrXV 208010 . T C 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-1.087;QD=18.10;ReadPosRankSum=0.968;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2657,291,0 chrXV 208100 . A G 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.149;DP=140;Dels=0.00;FS=7.339;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.734;QD=22.59;ReadPosRankSum=2.361;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3196,342,0 chrXV 208220 . C T 2670 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.63;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2703,285,0 chrXV 208309 . T A 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=141;Dels=0.00;FS=4.332;HaplotypeScore=9.6080;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-1.634;QD=20.72;ReadPosRankSum=1.683;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2955,306,0 chrXV 208421 . A G 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=121;Dels=0.00;FS=4.807;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.873;QD=23.17;ReadPosRankSum=1.646;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2837,309,0 chrXV 208452 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.45;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3058,321,0 chrXV 208517 . A C 3812.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.2774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.76;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3812,414,0 chrXV 208556 . T C 3899.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.99;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3899,414,0 chrXV 208643 . G A 4431.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=15.7285;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.35;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4431,454,0 chrXV 208678 . A G 4390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=186;Dels=0.00;FS=3.452;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.615;QD=23.60;ReadPosRankSum=1.713;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4390,468,0 chrXV 208904 . C T 4510.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4510,460,0 chrXV 208980 . A G 4363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=190;Dels=0.00;FS=6.137;HaplotypeScore=11.6870;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.255;QD=22.96;ReadPosRankSum=2.397;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4363,480,0 chrXV 209102 . T C 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=160;Dels=0.00;FS=3.294;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.460;QD=24.03;ReadPosRankSum=1.710;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3844,405,0 chrXV 209157 . A G 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=177;Dels=0.00;FS=3.429;HaplotypeScore=11.3098;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.334;QD=22.71;ReadPosRankSum=1.712;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:4019,429,0 chrXV 209222 . A G 4223.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.55;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4223,445,0 chrXV 209254 . C A 2982 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.25;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3015,318,0 chrXV 209279 . T A 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=3.802;HaplotypeScore=7.5515;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=1.617;QD=22.72;ReadPosRankSum=1.703;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2759,285,0 chrXV 209318 . A G 2663 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.30;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2696,297,0 chrXV 209383 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.86;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3344,357,0 chrXV 209483 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.97;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3561,370,0 chrXV 209501 . A T 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=165;Dels=0.00;FS=6.264;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-0.892;QD=22.56;ReadPosRankSum=1.669;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3722,388,0 chrXV 209573 . G C 3943.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=24.49;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3943,417,0 chrXV 209582 . T C 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.121;QD=23.03;ReadPosRankSum=1.688;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3615,396,0 chrXV 209698 . T C 4736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=214;Dels=0.00;FS=3.790;HaplotypeScore=6.6844;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=1.033;QD=22.13;ReadPosRankSum=1.716;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4736,507,0 chrXV 209762 . G A 5028.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=24.41;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:5028,523,0 chrXV 209867 . T G 3619.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.7960;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.05;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3619,384,0 chrXV 209903 . T C 3532.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.4811;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=23.55;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3532,390,0 chrXV 209963 . C T 3144 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=20.68;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3177,327,0 chrXV 209967 . A G 3056 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=20.11;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3089,321,0 chrXV 210056 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-0.037;QD=23.96;ReadPosRankSum=1.707;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3331,354,0 chrXV 210115 . T C 2531 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=142;Dels=0.00;FS=8.193;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;MQRankSum=-1.211;QD=17.82;ReadPosRankSum=3.309;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:4,137:142:99:2564,270,0 chrXV 210116 . T C 2427 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.195;DP=147;Dels=0.00;FS=13.458;HaplotypeScore=3.4490;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;MQRankSum=-1.337;QD=16.51;ReadPosRankSum=4.397;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:7,139:147:99:2460,267,0 chrXV 210122 . A G 2466 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.5953;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=16.33;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2499,279,0 chrXV 210619 . G A 5061.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.4945;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.56;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5061,532,0 chrXV 210811 . G A 7784.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=14.9540;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.86;SB=-4.010e+03 GT:AD:DP:GQ:PL 1/1:0,299:301:99:7784,793,0 chrXV 210847 . T C 6371.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=15.0894;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.95;SB=-3.381e+03 GT:AD:DP:GQ:PL 1/1:0,263:266:99:6371,693,0 chrXV 210877 . T C 6186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=262;Dels=0.00;FS=3.769;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-1.296;QD=23.61;ReadPosRankSum=1.706;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:1,261:262:99:6186,655,0 chrXV 211015 . C T 6165.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=19.1223;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.50;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:0,272:274:99:6165,637,0 chrXV 211081 . A G 4725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=224;Dels=0.00;FS=12.807;HaplotypeScore=17.9609;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.350;QD=21.09;ReadPosRankSum=3.421;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:4,218:224:99:4725,519,0 chrXV 211164 . C G 5091.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.2469;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.73;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5091,552,0 chrXV 211180 . C T 5018.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.50;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5018,520,0 chrXV 211399 . A T 5419.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.6677;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.98;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5419,568,0 chrXV 211444 . A G 5511.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.5905;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=25.05;SB=-2.973e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5511,574,0 chrXV 211986 . C T 5242.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.5112;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.61;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5242,565,0 chrXV 212114 . C T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3727,393,0 chrXV 212282 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.2896;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.92;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3081,318,0 chrXV 212813 . T C 5340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.350;DP=223;Dels=0.00;FS=8.869;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=2.324;QD=23.95;ReadPosRankSum=3.358;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:4,217:223:99:5340,559,0 chrXV 212987 . C T 4059.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.8750;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.71;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4059,421,0 chrXV 213206 . G C 4474.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.4620;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.81;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4474,486,0 chrXV 213212 . A G 4324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=221;Dels=0.00;FS=3.999;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.274;QD=19.57;ReadPosRankSum=1.716;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4324,480,0 chrXV 213233 . A T 4591.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=5.0366;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.62;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4591,478,0 chrXV 213488 . T C 5574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=238;Dels=0.00;FS=3.257;HaplotypeScore=13.7298;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-1.231;QD=23.42;ReadPosRankSum=1.717;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:1,234:238:99:5574,592,0 chrXV 213775 . G A 2242 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.15;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2275,237,0 chrXV 213834 . T C 1758 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.70;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1791,198,0 chrXV 213883 . A T 84.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.078;DP=76;Dels=0.00;FS=18.117;HaplotypeScore=47.0337;MLEAC=1;MLEAF=0.500;MQ=52.24;MQ0=0;MQRankSum=-0.019;QD=1.11;ReadPosRankSum=-1.135;SB=-5.201e+01 GT:AD:DP:GQ:PL 0/1:58,18:76:99:114,0,198 chrXV 213920 . T C 1467 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.26;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1500,159,0 chrXV 213976 . G T 2199 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.2973;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.87;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2232,231,0 chrXV 214077 . G A 2595 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=24.25;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2628,267,0 chrXV 214472 . C T 5929.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=15.0074;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.62;SB=-3.023e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5929,628,0 chrXV 214604 . G A 6418.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=15.5187;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.78;SB=-3.587e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:6418,658,0 chrXV 214699 . A G 7537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=314;Dels=0.00;FS=7.966;HaplotypeScore=13.5639;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.806;QD=24.00;ReadPosRankSum=2.418;SB=-3.336e+03 GT:AD:DP:GQ:PL 1/1:2,310:314:99:7537,825,0 chrXV 214734 . G A 6131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=15.3765;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.387;QD=22.38;ReadPosRankSum=1.351;SB=-3.480e+03 GT:AD:DP:GQ:PL 1/1:1,272:274:99:6131,664,0 chrXV 215175 . G A 4873.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.32;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4873,511,0 chrXV 215715 . C T 5733.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=22.2273;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.23;SB=-3.376e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:5733,607,0 chrXV 215865 . G A 6319.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=16.5801;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.32;SB=-3.088e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:6319,658,0 chrXV 216247 . G A 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=136;Dels=0.00;FS=5.315;HaplotypeScore=5.3023;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.306;QD=18.49;ReadPosRankSum=1.375;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2547,261,0 chrXV 216321 . A T 4028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=16.7122;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;MQRankSum=0.755;QD=21.31;ReadPosRankSum=-1.216;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4028,424,0 chrXV 216376 . A G 4711.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=25.60;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4711,507,0 chrXV 216399 . C A 4796.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.5864;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=25.65;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4796,496,0 chrXV 217038 . T C 221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.869;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=1.448;QD=18.42;ReadPosRankSum=1.159;SB=-5.499e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:27:254,27,0 chrXV 217092 . C T 1855 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.12;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1888,195,0 chrXV 217113 . C G 2645 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.35;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2678,309,0 chrXV 217434 . G A 5615.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=15.7583;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.64;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:0,245:248:99:5615,580,0 chrXV 217521 . G A 6476.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=21.4572;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.99;SB=-3.039e+03 GT:AD:DP:GQ:PL 1/1:0,268:270:99:6476,682,0 chrXV 218142 . G A 6173.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.93;SB=-2.942e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:6173,646,0 chrXV 218547 . C T 2160 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.23;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2193,234,0 chrXV 219832 . T C 5575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.340;DP=232;Dels=0.00;FS=8.662;HaplotypeScore=12.6914;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.710;QD=24.03;ReadPosRankSum=3.400;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:4,228:232:99:5575,595,0 chrXV 219865 . C T 5597.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=14.1534;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.22;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5597,583,0 chrXV 220341 . G A 5535.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.6565;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.93;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5535,586,0 chrXV 220556 . T C 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=176;Dels=0.00;FS=7.410;HaplotypeScore=11.9747;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.433;QD=22.71;ReadPosRankSum=2.421;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:2,171:176:99:3997,426,0 chrXV 220880 . G A 3850.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=18.2958;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3850,394,0 chrXV 221075 . G C 4186.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.13;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,176:181:99:4186,447,0 chrXV 221859 . T C 2889 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.48;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2922,312,0 chrXV 222860 . C T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.16;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3612,375,0 chrXV 222869 . T C 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=3.487;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.697;QD=20.70;ReadPosRankSum=1.710;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3242,345,0 chrXV 223392 . G A 5843.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=17.6024;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.97;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5843,604,0 chrXV 223663 . A G 4602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=220;Dels=0.00;FS=2.513;HaplotypeScore=13.0243;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.740;QD=20.92;ReadPosRankSum=2.932;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:3,217:220:99:4602,504,0 chrXV 227038 . A G 764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.609;QD=20.65;ReadPosRankSum=1.639;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:87:797,87,0 chrXV 227150 . A C 1072 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.82;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1105,123,0 chrXV 227300 . C T 77.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.395;DP=90;Dels=0.00;FS=9.399;HaplotypeScore=17.8460;MLEAC=1;MLEAF=0.500;MQ=50.40;MQ0=0;MQRankSum=-2.227;QD=0.86;ReadPosRankSum=-5.585;SB=-1.630e+02 GT:AD:DP:GQ:PL 0/1:57,33:90:99:107,0,1082 chrXV 227337 . T G 114.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.468;DP=105;Dels=0.00;FS=9.502;HaplotypeScore=13.0995;MLEAC=1;MLEAF=0.500;MQ=51.52;MQ0=0;MQRankSum=1.070;QD=1.09;ReadPosRankSum=-5.681;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,19:105:99:144,0,1219 chrXV 228074 . C T 2276 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2309,240,0 chrXV 228290 . A C 2868 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2901,312,0 chrXV 230066 . C T 2357 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.62;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2390,258,0 chrXV 230105 . G T 4218.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.31;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4218,433,0 chrXV 233424 . A G 4885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=226;Dels=0.00;FS=10.250;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=0.085;QD=21.62;ReadPosRankSum=2.880;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:3,222:226:99:4885,514,0 chrXV 233436 . C A 4630.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.86;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4630,493,0 chrXV 233724 . G A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.0895;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.49;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3758,393,0 chrXV 234020 . T C 2336 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.60;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2369,252,0 chrXV 234113 . T A 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=104.7128;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=1.100;QD=20.74;ReadPosRankSum=1.702;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2418,252,0 chrXV 234283 . A G 6139.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.37;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:6139,666,0 chrXV 234932 . A T 5013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=216;Dels=0.00;FS=5.283;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.604;QD=23.21;ReadPosRankSum=1.620;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:5013,526,0 chrXV 235233 . A C 4997.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=22.0838;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.82;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:4997,523,0 chrXV 235486 . C T 5550.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.42;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5550,577,0 chrXV 235534 . G A 5896.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.9196;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=24.57;SB=-3.235e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5896,613,0 chrXV 236253 . A G 14299.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=607;Dels=0.00;FS=4.160;HaplotypeScore=33.9907;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.955;QD=23.56;ReadPosRankSum=1.698;SB=-6.081e+03 GT:AD:DP:GQ:PL 1/1:1,601:607:99:14299,1526,0 chrXV 236292 . A G 12371.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;DP=560;Dels=0.00;FS=13.159;HaplotypeScore=43.3068;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-3.287;QD=22.09;ReadPosRankSum=3.438;SB=-7.046e+03 GT:AD:DP:GQ:PL 1/1:4,551:559:99:12371,1383,0 chrXV 236967 . A G 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.018;DP=193;Dels=0.00;FS=6.814;HaplotypeScore=53.9572;MLEAC=2;MLEAF=1.00;MQ=38.15;MQ0=0;MQRankSum=1.848;QD=12.69;ReadPosRankSum=6.696;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:27,166:193:99:2483,264,0 chrXV 236970 . A G 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.781;DP=192;Dels=0.00;FS=2.285;HaplotypeScore=103.9036;MLEAC=2;MLEAF=1.00;MQ=38.01;MQ0=0;MQRankSum=1.531;QD=12.33;ReadPosRankSum=3.374;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:14,178:192:99:2401,258,0 chrXV 236985 . A G 895.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.359;DP=201;Dels=0.00;FS=9.229;HaplotypeScore=332.4118;MLEAC=1;MLEAF=0.500;MQ=36.16;MQ0=0;MQRankSum=-1.724;QD=4.45;ReadPosRankSum=-0.640;SB=-6.010e+02 GT:AD:DP:GQ:PL 0/1:107,94:201:99:925,0,284 chrXV 237048 . T G 2762 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.4061;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=13.22;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:2795,300,0 chrXV 237076 . G A 3495.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.39;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:3495,361,0 chrXV 238149 . T C 981 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.21;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1014,114,0 chrXV 238504 . C A 2315 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.61;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2348,243,0 chrXV 238753 . A G 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.556;DP=158;Dels=0.00;FS=3.208;HaplotypeScore=10.1150;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.710;QD=22.06;ReadPosRankSum=1.688;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3485,367,0 chrXV 238924 . A C 4261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=169;Dels=0.00;FS=6.859;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.036;QD=25.21;ReadPosRankSum=2.421;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:4261,456,0 chrXV 240094 . G A 3947.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.6610;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.36;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3947,412,0 chrXV 240239 . T A 4654.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.6623;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.62;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4654,484,0 chrXV 240351 . C T 3750.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7671;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.17;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3750,382,0 chrXV 241207 . T G 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.9515;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.339;QD=22.83;ReadPosRankSum=1.640;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3425,369,0 chrXV 241259 . A G 4120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=3.731;HaplotypeScore=10.4821;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.571;QD=24.24;ReadPosRankSum=1.691;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4120,444,0 chrXV 242267 . T C 6862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=279;Dels=0.00;FS=3.121;HaplotypeScore=12.9590;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.130;QD=24.60;ReadPosRankSum=1.633;SB=-3.534e+03 GT:AD:DP:GQ:PL 1/1:1,278:279:99:6862,736,0 chrXV 242641 . C G 1329 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.49;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1362,144,0 chrXV 242786 . C T 1415 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.21;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,66:70:99:1448,150,0 chrXV 243303 . T C 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-1.194;QD=24.84;ReadPosRankSum=1.698;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2592,273,0 chrXV 243332 . C A 2253 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=21.87;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2286,234,0 chrXV 243335 . C G 2170 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.27;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2203,231,0 chrXV 243462 . T C 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=161;Dels=0.00;FS=2.857;HaplotypeScore=3.1507;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.710;QD=19.57;ReadPosRankSum=2.389;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3184,342,0 chrXV 243471 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=13.5394;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=19.54;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3400,348,0 chrXV 243670 . T C 4782.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.6921;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.56;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4782,522,0 chrXV 244063 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.73;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3559,381,0 chrXV 244192 . A G 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=4.479;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.256;QD=24.85;ReadPosRankSum=1.672;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2891,321,0 chrXV 244324 . T A 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=119;Dels=0.00;FS=5.948;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-2.308;QD=22.90;ReadPosRankSum=2.821;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2758,297,0 chrXV 244393 . C T 3352.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=16.7845;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.35;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3352,351,0 chrXV 244528 . A T 4161.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.3169;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.91;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4161,436,0 chrXV 244783 . G A 4428.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.7233;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.81;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4428,460,0 chrXV 244803 . T C 3771.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.99;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3771,411,0 chrXV 244855 . A C 2605 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.67;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2638,294,0 chrXV 245116 . A C 2973 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3006,321,0 chrXV 245875 . G C 3666.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3666,393,0 chrXV 245914 . A G 3499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=136;Dels=0.00;FS=3.043;HaplotypeScore=9.5594;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.527;QD=25.73;ReadPosRankSum=1.681;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3499,369,0 chrXV 245956 . G A 2838 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.80;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2871,297,0 chrXV 246022 . T C 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.369;QD=23.41;ReadPosRankSum=1.676;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2936,315,0 chrXV 246081 . G A 3079 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.98;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3112,318,0 chrXV 246115 . C T 2790 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=6.6740;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.14;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2823,300,0 chrXV 246679 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.13;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3225,333,0 chrXV 247141 . C T 4494.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=24.03;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4494,472,0 chrXV 247228 . T C 4372.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.13;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4372,465,0 chrXV 247346 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=20.95;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2840,291,0 chrXV 247349 . A T 2743 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=20.62;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2776,288,0 chrXV 247390 . A G 2980 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.27;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3013,318,0 chrXV 247461 . G A 2827 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=4.5954;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.50;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2860,312,0 chrXV 247462 . A G 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.362;DP=146;Dels=0.00;FS=9.061;HaplotypeScore=5.3841;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-1.418;QD=19.08;ReadPosRankSum=3.374;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:4,141:146:99:2819,312,0 chrXV 247525 . C T 2684 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.88;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2717,279,0 chrXV 247572 . C T 3427.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=25.01;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3427,352,0 chrXV 247746 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=26.38;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3298,337,0 chrXV 247923 . T C 4496.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.2266;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.26;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4496,478,0 chrXV 248073 . A G 3476.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.02;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3476,372,0 chrXV 248100 . T C 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=155;Dels=0.00;FS=7.454;HaplotypeScore=5.9234;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.151;QD=21.24;ReadPosRankSum=2.339;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3292,363,0 chrXV 248262 . C T 3857.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.57;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3857,400,0 chrXV 248365 . C G 3527.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.3078;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.67;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3527,378,0 chrXV 248560 . C T 4750.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.7209;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.99;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4750,496,0 chrXV 248578 . G A 4622.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.0934;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=20.45;SB=-2.935e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4622,495,0 chrXV 248750 . G A 5324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.9378;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=1.276;QD=23.35;ReadPosRankSum=0.167;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5324,553,0 chrXV 248887 . G A 4721.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.37;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4721,499,0 chrXV 248980 . C T 3689.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.45;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3689,382,0 chrXV 248992 . T C 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=178;Dels=0.00;FS=7.149;HaplotypeScore=5.1330;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.493;QD=19.37;ReadPosRankSum=2.422;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3448,369,0 chrXV 249082 . A G 3678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.1125;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.146;QD=22.02;ReadPosRankSum=1.669;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3678,393,0 chrXV 249246 . C T 2716 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.62;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2749,285,0 chrXV 249416 . T C 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=165;Dels=0.00;FS=2.816;HaplotypeScore=13.6307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.852;QD=21.87;ReadPosRankSum=2.028;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3609,387,0 chrXV 249478 . C T 4332.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4332,451,0 chrXV 249516 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.573;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.311;QD=23.77;ReadPosRankSum=1.592;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3566,378,0 chrXV 249588 . C T 3632.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.58;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3632,387,0 chrXV 249821 . A G 3070 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3103,336,0 chrXV 249980 . C T 4156.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.1677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4156,433,0 chrXV 250175 . A C 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=178;Dels=0.00;FS=6.096;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.470;QD=22.46;ReadPosRankSum=2.393;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:2,173:178:99:3997,438,0 chrXV 250385 . C T 4328.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.8517;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.87;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4328,448,0 chrXV 250527 . C T 4774.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.1678;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.38;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4774,490,0 chrXV 251243 . G A 1552 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.25;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1585,168,0 chrXV 252485 . A G 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=192;Dels=0.00;FS=2.946;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.431;QD=20.80;ReadPosRankSum=2.372;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:3994,441,0 chrXV 252721 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3051,318,0 chrXV 252899 . C A 1172 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.56;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1205,126,0 chrXV 253558 . G A 3842.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3842,394,0 chrXV 253998 . T G 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=141;Dels=0.00;FS=3.019;HaplotypeScore=12.6577;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.167;QD=22.10;ReadPosRankSum=2.415;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3149,351,0 chrXV 254241 . A G 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=3.109;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.169;QD=23.61;ReadPosRankSum=1.706;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:3220,345,0 chrXV 254857 . C G 601 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;QD=24.04;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:69:634,69,0 chrXV 254919 . C T 1935 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.25;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1968,204,0 chrXV 255018 . T C 1725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=1.225;QD=20.78;ReadPosRankSum=1.690;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1758,186,0 chrXV 255031 . T C 2025 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.50;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2058,219,0 chrXV 257252 . A G 3044 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.5840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3077,327,0 chrXV 257554 . C T 2816 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2849,291,0 chrXV 257615 . A G 2894 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.53;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,118:123:99:2927,309,0 chrXV 257759 . G C 4480.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4480,480,0 chrXV 259644 . T G 4007.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.43;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4007,432,0 chrXV 261118 . A G 2769 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2802,291,0 chrXV 261583 . G A 3816.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.32;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3816,397,0 chrXV 262369 . A G 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=169;Dels=0.00;FS=6.069;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.275;QD=22.66;ReadPosRankSum=2.874;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:3,165:169:99:3830,408,0 chrXV 263595 . C T 3732.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.4789;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.72;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3732,385,0 chrXV 265232 . T A 1667 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.65;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1700,177,0 chrXV 265798 . A G 4343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=197;Dels=0.00;FS=6.053;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.097;QD=22.05;ReadPosRankSum=2.933;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:3,193:197:99:4343,468,0 chrXV 266130 . C T 2724 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=20.95;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2757,300,0 chrXV 266154 . A G 2111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;MQRankSum=-1.096;QD=21.54;ReadPosRankSum=1.697;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2144,234,0 chrXV 266157 . A G 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=-0.384;QD=23.37;ReadPosRankSum=2.397;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2206,234,0 chrXV 266234 . T C 750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.059;QD=20.83;ReadPosRankSum=1.636;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:84:783,84,0 chrXV 266279 . G A 1133 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.12;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1166,123,0 chrXV 267165 . C T 4218.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.81;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4218,433,0 chrXV 268175 . C G 3607.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.88;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3607,373,0 chrXV 268222 . A G 4014.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.63;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4014,435,0 chrXV 269941 . C T 2991 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3024,312,0 chrXV 270070 . A G 5109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.1064;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.530;QD=23.33;ReadPosRankSum=1.669;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:5109,550,0 chrXV 271365 . T C 6008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=263;Dels=0.00;FS=16.550;HaplotypeScore=20.9537;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.642;QD=22.84;ReadPosRankSum=2.973;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:3,258:263:99:6008,631,0 chrXV 271895 . G C 2149 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2709;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=22.86;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2182,234,0 chrXV 272022 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=25.34;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3978,423,0 chrXV 272235 . G A 5379.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.52;SB=-3.038e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5379,568,0 chrXV 273227 . T C 3955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=164;Dels=0.00;FS=3.036;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.322;QD=24.12;ReadPosRankSum=2.390;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3955,426,0 chrXV 273332 . C T 4756.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.9236;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4756,496,0 chrXV 273621 . G A 4691.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.56;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4691,490,0 chrXV 273775 . G C 4868.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.2122;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:0,196:200:99:4868,517,0 chrXV 273944 . G A 4704.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=17.5149;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.08;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4704,499,0 chrXV 274033 . C T 4935.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.9342;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.64;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4935,517,0 chrXV 274195 . G A 6160.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.25;SB=-3.457e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:6160,640,0 chrXV 274222 . G A 5969.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.46;SB=-3.285e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5969,613,0 chrXV 274261 . G A 4851.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=19.9985;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.66;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4851,514,0 chrXV 275793 . G A 4123.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.6356;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.25;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4123,433,0 chrXV 276033 . A G 4766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=220;Dels=0.00;FS=2.755;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.088;QD=21.66;ReadPosRankSum=2.304;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:4766,528,0 chrXV 276471 . A G 3804.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.4845;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.78;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3804,408,0 chrXV 276679 . T C 3758.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.1363;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.39;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3758,402,0 chrXV 277467 . C G 1855 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1888,201,0 chrXV 277699 . C A 566 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.69;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:63:599,63,0 chrXV 279942 . T A 4440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.677;QD=25.52;ReadPosRankSum=1.712;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4440,466,0 chrXV 282519 . G C 3988.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.53;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:3988,421,0 chrXV 285417 . G A 4547.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.45;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:4547,469,0 chrXV 285588 . A G 2955 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2988,312,0 chrXV 289957 . A G 4920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=212;Dels=0.00;FS=7.278;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-2.357;QD=23.21;ReadPosRankSum=2.368;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4920,546,0 chrXV 290199 . G A 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.4985;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.074;QD=21.31;ReadPosRankSum=-1.216;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4049,426,0 chrXV 290233 . G A 4505.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.29;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4505,463,0 chrXV 290268 . G C 4250.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=14.0412;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.48;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:4250,453,0 chrXV 290676 . G A 1612 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1645,171,0 chrXV 290822 . T G 4310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.8521;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.831;QD=25.81;ReadPosRankSum=2.391;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4310,454,0 chrXV 292858 . G T 4249.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=25.14;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4249,445,0 chrXV 292883 . A G 3888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=166;Dels=0.00;FS=3.340;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-1.711;QD=23.42;ReadPosRankSum=1.669;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3888,420,0 chrXV 293123 . C T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.0967;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=23.14;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3564,367,0 chrXV 293132 . A G 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=156;Dels=0.00;FS=2.936;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.874;QD=20.67;ReadPosRankSum=2.324;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3258,345,0 chrXV 293590 . A G 2872 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2905,312,0 chrXV 293976 . C A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.32;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3283,339,0 chrXV 294163 . C T 3470.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.68;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3470,361,0 chrXV 294178 . C T 3433.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.59;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3433,366,0 chrXV 294284 . A G 4167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=5.453;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.732;QD=24.23;ReadPosRankSum=1.712;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4167,450,0 chrXV 294330 . G A 4579.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.02;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4579,463,0 chrXV 294382 . G A 3976.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.97;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3976,435,0 chrXV 294553 . C T 4153.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.4971;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.01;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4153,433,0 chrXV 295275 . A G 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=157;Dels=0.00;FS=7.588;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.325;QD=19.23;ReadPosRankSum=2.402;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:3052,333,0 chrXV 295276 . A G 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=158;Dels=0.00;FS=7.177;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-1.417;QD=19.41;ReadPosRankSum=2.309;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3100,327,0 chrXV 297107 . C T 4440.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4440,457,0 chrXV 297528 . T C 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=143;Dels=0.00;FS=3.753;HaplotypeScore=9.0781;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.683;QD=24.14;ReadPosRankSum=1.683;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,139:143:99:3452,363,0 chrXV 297608 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.54;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3031,321,0 chrXV 298844 . G T 2559 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=20.80;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2592,267,0 chrXV 298850 . T A 2472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=3.315;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;MQRankSum=0.065;QD=18.59;ReadPosRankSum=1.680;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2505,270,0 chrXV 298872 . C T 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=133;Dels=0.00;FS=3.109;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;MQRankSum=-0.247;QD=16.18;ReadPosRankSum=0.378;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2185,231,0 chrXV 298882 . A G 2171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=136;Dels=0.00;FS=6.519;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;MQRankSum=-1.138;QD=15.96;ReadPosRankSum=2.413;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2204,237,0 chrXV 299136 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=133;Dels=0.00;FS=2.890;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.786;QD=25.07;ReadPosRankSum=2.413;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3334,351,0 chrXV 300140 . A G 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=113;Dels=0.00;FS=3.378;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.139;QD=21.71;ReadPosRankSum=1.670;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2486,264,0 chrXV 300301 . G T 3037 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.41;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3070,318,0 chrXV 300871 . C A 2185 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=23.00;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:2218,237,0 chrXV 300887 . C T 2607 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=23.07;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2640,279,0 chrXV 300972 . G A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.91;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3417,349,0 chrXV 301075 . T G 2526 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=20.88;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2559,279,0 chrXV 301153 . G A 1869 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.24;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1902,198,0 chrXV 301621 . C G 6576.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=14.0113;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.15;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,280:284:99:6576,732,0 chrXV 303067 . C T 2570 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.74;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2603,279,0 chrXV 303214 . G T 1192 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=8.0172;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.34;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1225,129,0 chrXV 303991 . A T 4232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=17.2479;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.451;QD=22.88;ReadPosRankSum=1.713;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4232,442,0 chrXV 305436 . A G 3790.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.29;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3790,411,0 chrXV 306068 . A G 3548.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.47;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3548,381,0 chrXV 307256 . A T 4218.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4218,439,0 chrXV 307589 . T C 2523 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.74;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2556,270,0 chrXV 307879 . T C 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.577;QD=22.93;ReadPosRankSum=1.639;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2601,282,0 chrXV 309504 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.79;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4034,429,0 chrXV 310257 . A G 2720 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=21.59;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2753,294,0 chrXV 310258 . A G 2661 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=21.12;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2694,285,0 chrXV 311438 . G A 4705.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.9001;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.18;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4705,484,0 chrXV 311898 . T C 5599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=240;Dels=0.00;FS=2.909;HaplotypeScore=11.5194;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.253;QD=23.33;ReadPosRankSum=2.419;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:2,238:240:99:5599,595,0 chrXV 314187 . C G 3055 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.9268;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.80;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,128:134:99:3088,327,0 chrXV 316958 . T G 5943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=255;Dels=0.00;FS=7.144;HaplotypeScore=21.6384;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.804;QD=23.31;ReadPosRankSum=2.391;SB=-3.074e+03 GT:AD:DP:GQ:PL 1/1:2,250:255:99:5943,628,0 chrXV 318136 . C T 4327.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=15.9414;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.22;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4327,448,0 chrXV 322448 . T C 3302.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3302,345,0 chrXV 324875 . T C 2267 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.59;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2300,243,0 chrXV 328791 . C A 4002.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4002,421,0 chrXV 329041 . A G 1281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.667;QD=23.72;ReadPosRankSum=1.667;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1314,138,0 chrXV 329473 . T C 4568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=186;Dels=0.00;FS=2.736;HaplotypeScore=11.3248;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.644;QD=24.56;ReadPosRankSum=2.317;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4568,486,0 chrXV 329561 . C G 5721.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=16.3397;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.34;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5721,601,0 chrXV 330244 . A C 4381.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=18.1674;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.06;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4381,465,0 chrXV 330438 . T C 4972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=230;Dels=0.00;FS=5.886;HaplotypeScore=15.9091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.856;QD=21.62;ReadPosRankSum=2.952;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:3,227:230:99:4972,535,0 chrXV 330787 . C G 4021.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:4021,418,0 chrXV 330823 . A G 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=167;Dels=0.00;FS=2.906;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.361;QD=24.10;ReadPosRankSum=2.391;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4025,421,0 chrXV 331264 . G A 1828 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1861,195,0 chrXV 331520 . T A 4073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.880;QD=25.62;ReadPosRankSum=2.918;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:3,156:159:99:4073,421,0 chrXV 331767 . A G 5118.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=16.7083;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.229;QD=23.37;ReadPosRankSum=1.700;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:5118,544,0 chrXV 331799 . A C 3831.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.8287;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3831,426,0 chrXV 334926 . A G 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=121;Dels=0.00;FS=3.197;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.179;QD=21.83;ReadPosRankSum=1.674;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2675,282,0 chrXV 335413 . A G 4141.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.66;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4141,436,0 chrXV 336813 . G A 4973.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.1362;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.14;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,202:206:99:4973,514,0 chrXV 337020 . T A 3163 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.76;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3196,336,0 chrXV 337882 . G A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.16;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4076,432,0 chrXV 337970 . G C 4492.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,191:195:99:4492,478,0 chrXV 338019 . A G 5305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=234;Dels=0.00;FS=9.429;HaplotypeScore=13.9056;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.210;QD=22.67;ReadPosRankSum=2.893;SB=-2.918e+03 GT:AD:DP:GQ:PL 1/1:3,231:234:99:5305,591,0 chrXV 338412 . G A 4051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.5836;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.691;QD=23.55;ReadPosRankSum=-1.072;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:1,168:172:99:4051,399,0 chrXV 339985 . G A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3571,366,0 chrXV 340281 . T C 2064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=99;Dels=0.00;FS=3.044;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.385;QD=20.85;ReadPosRankSum=2.251;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2097,225,0 chrXV 340625 . T C 1451 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.44;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1484,156,0 chrXV 340701 . T C 1836 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1869,201,0 chrXV 340736 . A G 2012 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.40;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2045,216,0 chrXV 340936 . T A 665 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:72:698,72,0 chrXV 340969 . G A 709 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:78:742,78,0 chrXV 341179 . G A 1230 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1263,135,0 chrXV 343104 . G A 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;DP=150;Dels=0.00;FS=3.500;HaplotypeScore=8.9064;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.554;QD=23.84;ReadPosRankSum=-1.155;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3576,345,0 chrXV 344470 . T G 3999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=213;Dels=0.00;FS=2.766;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=1.033;QD=18.77;ReadPosRankSum=2.426;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:2,206:213:99:3999,438,0 chrXV 344472 . C A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.5784;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=18.96;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4077,429,0 chrXV 344794 . C T 3669.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.742;DP=605;Dels=0.00;FS=39.440;HaplotypeScore=30.7112;MLEAC=1;MLEAF=0.500;MQ=50.53;MQ0=4;MQRankSum=9.745;QD=6.06;ReadPosRankSum=-0.408;SB=-1.986e+03 GT:AD:DP:GQ:PL 0/1:364,238:605:99:3669,0,6368 chrXV 344830 . C T 2274.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.962;DP=551;Dels=0.00;FS=49.951;HaplotypeScore=23.0715;MLEAC=1;MLEAF=0.500;MQ=45.85;MQ0=7;MQRankSum=-1.740;QD=4.13;ReadPosRankSum=-4.875;SB=-5.770e+02 GT:AD:DP:GQ:PL 0/1:371,177:551:99:2304,0,5750 chrXV 344865 . T A 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.179;DP=280;Dels=0.00;FS=66.347;HaplotypeScore=22.1383;MLEAC=1;MLEAF=0.500;MQ=39.80;MQ0=8;MQRankSum=-2.987;QD=0.13;ReadPosRankSum=-5.144;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:235,44:280:67:67,0,3428 chrXV 344901 . G T 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.178;DP=96;Dels=0.00;FS=11.983;HaplotypeScore=17.5475;MLEAC=1;MLEAF=0.500;MQ=22.53;MQ0=5;MQRankSum=1.586;QD=0.42;ReadPosRankSum=2.382;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,14:96:70:70,0,635 chrXV 344902 . C T 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.714;DP=109;Dels=0.00;FS=1.104;HaplotypeScore=18.3362;MLEAC=1;MLEAF=0.500;MQ=22.34;MQ0=6;MQRankSum=3.163;QD=0.28;ReadPosRankSum=1.575;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,18:109:60:60,0,786 chrXV 345081 . G T 5664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.175;DP=350;Dels=0.00;FS=48.130;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=3;MQRankSum=4.672;QD=16.18;ReadPosRankSum=3.098;SB=-3.657e+03 GT:AD:DP:GQ:PL 1/1:14,335:350:99:5664,493,0 chrXV 345082 . C T 5788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.750;DP=355;Dels=0.00;FS=44.370;HaplotypeScore=3.5831;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=3;MQRankSum=4.341;QD=16.30;ReadPosRankSum=3.070;SB=-3.774e+03 GT:AD:DP:GQ:PL 1/1:13,341:355:99:5788,514,0 chrXV 346506 . T A 293.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.674;DP=164;Dels=0.00;FS=0.601;HaplotypeScore=14.7724;MLEAC=1;MLEAF=0.500;MQ=48.29;MQ0=0;MQRankSum=-1.537;QD=1.79;ReadPosRankSum=-6.645;SB=-5.090e+02 GT:AD:DP:GQ:PL 0/1:98,64:164:99:323,0,1476 chrXV 346509 . C T 1475.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.925;DP=173;Dels=0.00;FS=6.725;HaplotypeScore=20.0802;MLEAC=1;MLEAF=0.500;MQ=48.80;MQ0=0;MQRankSum=0.860;QD=8.53;ReadPosRankSum=5.222;SB=-9.670e+02 GT:AD:DP:GQ:PL 0/1:72,97:173:99:1505,0,494 chrXV 346519 . G A 1164.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.655;DP=181;Dels=0.00;FS=2.672;HaplotypeScore=16.3840;MLEAC=1;MLEAF=0.500;MQ=49.20;MQ0=0;MQRankSum=2.628;QD=6.43;ReadPosRankSum=2.441;SB=-9.030e+02 GT:AD:DP:GQ:PL 0/1:73,107:181:99:1194,0,1027 chrXV 346525 . G A 474.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.634;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.7357;MLEAC=1;MLEAF=0.500;MQ=48.89;MQ0=0;MQRankSum=-4.295;QD=2.76;ReadPosRankSum=-6.319;SB=-3.780e+02 GT:AD:DP:GQ:PL 0/1:117,54:172:99:504,0,1323 chrXV 346528 . G A 224.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.076;DP=160;Dels=0.00;FS=1.529;HaplotypeScore=14.0933;MLEAC=1;MLEAF=0.500;MQ=49.72;MQ0=0;MQRankSum=-5.072;QD=1.40;ReadPosRankSum=-5.976;SB=-2.380e+02 GT:AD:DP:GQ:PL 0/1:122,36:160:99:254,0,1451 chrXV 346531 . A G 73.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.031;DP=175;Dels=0.01;FS=0.724;HaplotypeScore=18.8254;MLEAC=1;MLEAF=0.500;MQ=50.68;MQ0=0;MQRankSum=-6.000;QD=0.42;ReadPosRankSum=-5.545;SB=-1.200e+02 GT:AD:DP:GQ:PL 0/1:139,33:173:99:103,0,1832 chrXV 347793 . A G 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=103;Dels=0.00;FS=3.316;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.665;QD=21.60;ReadPosRankSum=1.698;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2258,243,0 chrXV 348039 . G T 2414 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.75;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2447,252,0 chrXV 348182 . A G 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.433;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.209;QD=22.96;ReadPosRankSum=1.702;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2696,288,0 chrXV 348935 . G A 4779.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.38;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4779,493,0 chrXV 349164 . T C 3900.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.94;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3900,414,0 chrXV 349427 . T A 4533.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.6552;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.73;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4533,469,0 chrXV 349515 . C T 5130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=222.6462;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.264;QD=21.65;ReadPosRankSum=1.204;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:2,235:237:99:5130,544,0 chrXV 349766 . G T 2851 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.44;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2884,297,0 chrXV 349987 . A C 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=4.832;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.230;QD=24.97;ReadPosRankSum=1.659;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3570,381,0 chrXV 350020 . A G 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=4.210;HaplotypeScore=8.6626;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.203;QD=23.94;ReadPosRankSum=1.708;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3471,363,0 chrXV 350053 . A G 3641.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=24.77;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3641,378,0 chrXV 350129 . C T 2993 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.4292;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.02;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3026,312,0 chrXV 350275 . T A 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;DP=142;Dels=0.00;FS=9.214;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.438;QD=23.64;ReadPosRankSum=3.274;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:4,138:142:99:3357,354,0 chrXV 350302 . C G 3334.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.65;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3334,357,0 chrXV 350368 . C T 2826 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.23;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2859,294,0 chrXV 350863 . T C 3828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=164;Dels=0.00;FS=2.714;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.249;QD=23.34;ReadPosRankSum=2.419;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3828,414,0 chrXV 351070 . C T 4703.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6468;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.37;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4703,487,0 chrXV 351238 . G T 5304.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.06;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5304,568,0 chrXV 351325 . C A 6637.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=16.8518;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.96;SB=-3.414e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:6637,700,0 chrXV 351470 . A G 5614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.158;DP=256;Dels=0.00;FS=6.072;HaplotypeScore=18.8624;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.955;QD=21.93;ReadPosRankSum=2.391;SB=-3.106e+03 GT:AD:DP:GQ:PL 1/1:2,251:256:99:5614,621,0 chrXV 351541 . C T 5665.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.75;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5665,577,0 chrXV 351607 . C T 5561.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=23.8489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,241:245:99:5561,592,0 chrXV 352665 . A G 4779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.2951;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.235;QD=23.09;ReadPosRankSum=1.682;SB=-2.762e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4779,508,0 chrXV 353226 . C G 4324.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.5797;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.30;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,198:203:99:4324,462,0 chrXV 353840 . G A 1686 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.84;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1719,183,0 chrXV 353934 . C T 2335 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.11;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2368,246,0 chrXV 354129 . T C 2166 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2199,246,0 chrXV 354230 . C G 1874 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.59;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1907,204,0 chrXV 354233 . A G 2017 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.16;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2050,219,0 chrXV 354288 . A G 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.589;QD=19.70;ReadPosRankSum=1.696;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1944,204,0 chrXV 354569 . C T 1671 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.21;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1704,180,0 chrXV 354577 . G A 2022 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.98;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2055,213,0 chrXV 354657 . T C 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=90;Dels=0.00;FS=3.696;HaplotypeScore=5.8853;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.058;QD=23.80;ReadPosRankSum=1.148;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:2175,228,0 chrXV 354680 . A T 1515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.697;QD=24.44;ReadPosRankSum=2.371;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1548,159,0 chrXV 354739 . T C 1218 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.42;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1251,132,0 chrXV 354846 . A T 1039 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.20;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1072,114,0 chrXV 354963 . G A 200.03 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=25.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:24:233,24,0 chrXV 355038 . G A 56.97 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.24;SB=-2.921e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:89,9,0 chrXV 355477 . A G 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.506;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.112;QD=24.93;ReadPosRankSum=1.657;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3465,375,0 chrXV 355517 . C T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3726,396,0 chrXV 355645 . A T 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.419;QD=23.22;ReadPosRankSum=1.642;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3552,364,0 chrXV 355779 . A G 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=135;Dels=0.00;FS=2.981;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.119;QD=25.01;ReadPosRankSum=2.395;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:3376,363,0 chrXV 355981 . G A 2984 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:3017,315,0 chrXV 356056 . T A 2480 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2513,252,0 chrXV 356119 . T G 1759 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1792,189,0 chrXV 356384 . A G 2405 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.6107;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.59;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2438,255,0 chrXV 356416 . T C 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=110;Dels=0.00;FS=2.748;HaplotypeScore=11.4909;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=2.111;QD=24.04;ReadPosRankSum=2.405;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2677,288,0 chrXV 356505 . C T 3719.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.15;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3719,382,0 chrXV 357029 . C T 3863.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.9126;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.99;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3863,406,0 chrXV 357107 . T C 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=137;Dels=0.00;FS=7.911;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.967;QD=22.85;ReadPosRankSum=2.359;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3163,333,0 chrXV 357164 . A G 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.2866;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.011;QD=21.80;ReadPosRankSum=2.322;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2976,315,0 chrXV 357194 . A G 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=1.377;QD=20.81;ReadPosRankSum=1.703;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2468,264,0 chrXV 357275 . C T 2818 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=22.02;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2851,300,0 chrXV 357276 . A G 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=-0.244;QD=20.58;ReadPosRankSum=1.678;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2708,294,0 chrXV 357287 . G A 2868 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=22.23;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2901,312,0 chrXV 357367 . C T 1929 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.8420;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.43;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1962,207,0 chrXV 357437 . C A 2255 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.51;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2288,249,0 chrXV 357574 . T C 2505 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=23.41;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2538,270,0 chrXV 357984 . G A 4839.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=4.0369;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=21.13;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4839,496,0 chrXV 357991 . T C 4638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=233;Dels=0.00;FS=6.503;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-0.788;QD=19.91;ReadPosRankSum=2.386;SB=-2.909e+03 GT:AD:DP:GQ:PL 1/1:2,230:233:99:4638,490,0 chrXV 358111 . A C 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.263;QD=19.39;ReadPosRankSum=1.710;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,154:158:99:3096,333,0 chrXV 358597 . A G 4896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=209;Dels=0.00;FS=3.030;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.041;QD=23.43;ReadPosRankSum=2.391;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4896,540,0 chrXV 359602 . C T 4658.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4658,478,0 chrXV 359899 . C T 5040.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.9857;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:5040,538,0 chrXV 360593 . A G 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=144;Dels=0.00;FS=9.245;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=2.262;QD=25.51;ReadPosRankSum=2.381;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3673,393,0 chrXV 360797 . C T 5119.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:5119,523,0 chrXV 360995 . T A 4147.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.54;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4147,433,0 chrXV 361051 . T C 4200.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.6786;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.45;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4200,456,0 chrXV 361345 . T C 2731 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2764,297,0 chrXV 361461 . C A 3739.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=26.52;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3739,385,0 chrXV 361558 . A T 3888.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.6471;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.28;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3888,409,0 chrXV 361719 . A G 4254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=183;Dels=0.00;FS=2.992;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.830;QD=23.25;ReadPosRankSum=2.423;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:4254,453,0 chrXV 361741 . G A 3759.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=20.54;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,178:183:99:3759,391,0 chrXV 361759 . G A 4300.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=22.16;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4300,436,0 chrXV 362126 . A G 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=137;Dels=0.00;FS=3.014;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.683;QD=17.00;ReadPosRankSum=2.359;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2362,258,0 chrXV 362429 . G C 4585.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4585,481,0 chrXV 363413 . T A 2895 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.62;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2928,315,0 chrXV 363553 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=138;Dels=0.00;FS=5.401;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.213;QD=23.75;ReadPosRankSum=2.919;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:3,134:138:99:3278,351,0 chrXV 363824 . G A 3514.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.28;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3514,361,0 chrXV 363974 . C A 2662 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.75;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2695,279,0 chrXV 364095 . A G 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.064;QD=23.99;ReadPosRankSum=1.690;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:2024,213,0 chrXV 364302 . T A 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.456;QD=23.74;ReadPosRankSum=1.696;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2288,234,0 chrXV 364509 . G A 2721 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2754,294,0 chrXV 364854 . C T 3574.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.2675;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.82;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3574,373,0 chrXV 365208 . G A 4508.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4508,463,0 chrXV 365792 . T C 5585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=242;Dels=0.00;FS=2.898;HaplotypeScore=8.9653;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.015;QD=23.08;ReadPosRankSum=2.358;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:2,240:242:99:5585,589,0 chrXV 365917 . G A 5315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=228;Dels=0.00;FS=4.135;HaplotypeScore=7.4618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.048;QD=23.31;ReadPosRankSum=-1.352;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5315,537,0 chrXV 366186 . A G 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=146;Dels=0.00;FS=3.040;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.042;QD=22.53;ReadPosRankSum=2.315;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3290,363,0 chrXV 366495 . T C 4756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.4838;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.461;QD=23.90;ReadPosRankSum=1.697;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4756,505,0 chrXV 366618 . C T 5178.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.0236;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.08;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5178,550,0 chrXV 366780 . C T 4790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.149;QD=24.19;ReadPosRankSum=1.345;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4790,493,0 chrXV 366884 . C T 3285.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3285,337,0 chrXV 367187 . T G 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=17.2249;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=-0.590;QD=21.94;ReadPosRankSum=1.695;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,93:96:99:2139,234,0 chrXV 367217 . C T 2172 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=19.57;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2205,234,0 chrXV 367218 . C T 2289 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.9260;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=20.26;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2322,243,0 chrXV 367258 . G A 2323 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.58;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2356,255,0 chrXV 367288 . A G 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-0.463;QD=19.60;ReadPosRankSum=1.706;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2600,276,0 chrXV 367292 . T C 2554 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=18.92;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2587,279,0 chrXV 367364 . A T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.93;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3239,336,0 chrXV 367410 . T C 3009 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=24.27;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3042,327,0 chrXV 367673 . A G 2913 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.41;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2946,315,0 chrXV 367742 . G A 3062 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.20;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3095,333,0 chrXV 367959 . A T 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.705;DP=133;Dels=0.00;FS=9.433;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.690;QD=23.53;ReadPosRankSum=2.856;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:3162,327,0 chrXV 368025 . A G 3170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;MQRankSum=-1.395;QD=22.01;ReadPosRankSum=1.660;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3203,336,0 chrXV 368035 . G C 3005 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2995;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=21.46;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3038,318,0 chrXV 368066 . C T 171.06 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=111.0732;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=1.20;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:21:204,21,0 chrXV 368190 . C T 5805.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.57;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5805,598,0 chrXV 368375 . C T 4725.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.77;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4725,484,0 chrXV 368964 . A C 3493.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.4128;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.87;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3493,372,0 chrXV 369165 . C T 2325 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=26.72;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2358,249,0 chrXV 369329 . A G 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=4.207;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.771;QD=25.51;ReadPosRankSum=1.631;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3495,372,0 chrXV 369380 . C T 3595.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3595,381,0 chrXV 369488 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3477,355,0 chrXV 369542 . C T 3700.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=16.0988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3700,390,0 chrXV 369848 . T G 3192 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3225,357,0 chrXV 369905 . C T 2945 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2978,318,0 chrXV 370186 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=24.85;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3330,337,0 chrXV 370229 . T C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=5.378;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.778;QD=21.96;ReadPosRankSum=1.707;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:3107,345,0 chrXV 370296 . T C 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=112;Dels=0.00;FS=6.543;HaplotypeScore=14.4675;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.802;QD=23.12;ReadPosRankSum=2.406;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2622,279,0 chrXV 371124 . G A 3643.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4980;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.56;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3643,387,0 chrXV 371158 . A G 4764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.6949;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.350;QD=23.94;ReadPosRankSum=1.350;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:4764,495,0 chrXV 371543 . G C 3030 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=12.6328;MLEAC=2;MLEAF=1.00;MQ=60.71;MQ0=0;QD=22.28;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,131:135:99:3063,333,0 chrXV 371632 . G C 3778.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3778,414,0 chrXV 372056 . C T 3096 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=24.77;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3129,324,0 chrXV 372211 . T C 3287.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=24.90;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3287,348,0 chrXV 372255 . T G 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=107;Dels=0.00;FS=4.021;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=1.144;QD=22.93;ReadPosRankSum=1.667;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2486,261,0 chrXV 372266 . C T 2180 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=24.22;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2213,225,0 chrXV 372353 . C T 1463 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=19.00;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1496,156,0 chrXV 372369 . G T 1625 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=18.90;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1658,183,0 chrXV 372375 . G T 1770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.290;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=0.700;QD=18.83;ReadPosRankSum=1.253;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1803,183,0 chrXV 372460 . T C 1212 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.24;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,59:63:99:1245,135,0 chrXV 372557 . A G 2007 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.6039;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.41;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:2040,216,0 chrXV 373468 . G T 3378.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.9308;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.96;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3378,349,0 chrXV 373539 . A G 3072 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.81;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3105,330,0 chrXV 373552 . A G 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.028;QD=24.01;ReadPosRankSum=1.704;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2986,321,0 chrXV 373586 . T C 2669 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=25.42;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2702,285,0 chrXV 373701 . G A 2441 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.66;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2474,258,0 chrXV 374373 . G A 3217.04 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.37;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3250,336,0 chrXV 374442 . T C 3381.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.32;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3381,363,0 chrXV 374481 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.04;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3235,339,0 chrXV 374598 . C G 2635 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.91;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2668,294,0 chrXV 374613 . C T 3082 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=24.08;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3115,321,0 chrXV 374669 . G A 2914 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.94;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2947,306,0 chrXV 374709 . G T 2867 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.40;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2900,309,0 chrXV 374751 . G A 4200.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=23.73;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4200,436,0 chrXV 374763 . T C 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.173;QD=22.27;ReadPosRankSum=1.674;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4008,424,0 chrXV 374879 . C T 2378 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=17.61;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2411,249,0 chrXV 374882 . T A 2416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=-0.906;QD=18.44;ReadPosRankSum=1.652;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2449,249,0 chrXV 375158 . A G 4690.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.0587;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.92;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4690,496,0 chrXV 375315 . G A 4466.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=24.5342;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,199:203:99:4466,474,0 chrXV 375420 . T C 5362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.7130;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.717;QD=24.26;ReadPosRankSum=2.427;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:5362,574,0 chrXV 375648 . C T 6241.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=14.3542;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.00;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:0,257:260:99:6241,646,0 chrXV 375894 . C A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.6876;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.54;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3494,366,0 chrXV 376190 . C A 4174.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.85;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4174,433,0 chrXV 376252 . C T 3433.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2382;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3433,360,0 chrXV 376576 . G A 2491 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.93;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2524,261,0 chrXV 376957 . G A 5905.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.1117;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.60;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5905,622,0 chrXV 377032 . T C 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=187;Dels=0.00;FS=11.131;HaplotypeScore=4.9968;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=-0.059;QD=20.42;ReadPosRankSum=2.384;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:3819,423,0 chrXV 377037 . G A 4079.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.3629;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.03;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4079,427,0 chrXV 377174 . C G 5914.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=14.2687;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.14;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5914,637,0 chrXV 377281 . G A 4443.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.5450;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=22.22;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4443,463,0 chrXV 377284 . A G 4268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=203;Dels=0.00;FS=3.811;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-0.549;QD=21.02;ReadPosRankSum=1.561;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4268,456,0 chrXV 377548 . G A 6615.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=16.6307;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.88;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:6615,715,0 chrXV 377605 . C T 6213.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=13.6158;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.45;SB=-3.195e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:6213,637,0 chrXV 377656 . G A 7313.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.14;SB=-3.211e+03 GT:AD:DP:GQ:PL 1/1:0,303:303:99:7313,751,0 chrXV 377730 . C T 8083.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=11.1358;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.64;SB=-4.444e+03 GT:AD:DP:GQ:PL 1/1:0,327:328:99:8083,856,0 chrXV 377760 . G A 7573.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.02;SB=-4.128e+03 GT:AD:DP:GQ:PL 1/1:0,328:329:99:7573,793,0 chrXV 377924 . T C 6504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=13.5980;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.925;QD=20.91;ReadPosRankSum=1.721;SB=-3.939e+03 GT:AD:DP:GQ:PL 1/1:1,308:311:99:6504,688,0 chrXV 378043 . T A 7040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=305;Dels=0.00;FS=5.205;HaplotypeScore=27.5190;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.914;QD=23.08;ReadPosRankSum=1.698;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:1,304:305:99:7040,733,0 chrXV 378090 . G A 7267.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=34.4852;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.75;SB=-3.301e+03 GT:AD:DP:GQ:PL 1/1:0,301:306:99:7267,769,0 chrXV 378122 . C G 6189.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.02;SB=-3.331e+03 GT:AD:DP:GQ:PL 1/1:0,278:281:99:6189,655,0 chrXV 378126 . T C 5949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=288;Dels=0.00;FS=3.645;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=1.008;QD=20.66;ReadPosRankSum=1.648;SB=-3.274e+03 GT:AD:DP:GQ:PL 1/1:1,286:288:99:5949,637,0 chrXV 378233 . G A 4807.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=22.6677;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.86;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,213:242:99:4807,513,0 chrXV 378285 . T C 6431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.433;DP=293;Dels=0.00;FS=2.947;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-1.286;QD=21.95;ReadPosRankSum=2.416;SB=-3.557e+03 GT:AD:DP:GQ:PL 1/1:2,289:293:99:6431,682,0 chrXV 378723 . T C 5088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.703;DP=222;Dels=0.00;FS=5.622;HaplotypeScore=13.4539;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.648;QD=22.92;ReadPosRankSum=2.932;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:3,217:222:99:5088,544,0 chrXV 378827 . C T 5655.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.86;SB=-3.174e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5655,586,0 chrXV 378890 . A G 3910.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.47;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3910,417,0 chrXV 378902 . C T 4097.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=23.55;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4097,433,0 chrXV 379161 . C T 3278.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.41;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3278,336,0 chrXV 379178 . T C 3570.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.17;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3570,381,0 chrXV 379232 . A C 3230.05 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.53;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3264,348,0 chrXV 379289 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=150;Dels=0.00;FS=3.069;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.092;QD=22.01;ReadPosRankSum=1.663;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3302,351,0 chrXV 379310 . G T 3024 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.57;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3057,324,0 chrXV 379384 . C T 3016 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6328;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.01;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3049,318,0 chrXV 379448 . T C 3461.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.8290;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.07;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3461,375,0 chrXV 379461 . C T 3711.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.8469;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=24.58;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3711,382,0 chrXV 379502 . C T 3385.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.03;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3385,349,0 chrXV 379747 . G C 3691.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.44;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3691,399,0 chrXV 379841 . C T 3122 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.76;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3155,330,0 chrXV 379848 . A G 3182 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.01;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3215,342,0 chrXV 379879 . C T 3787.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.93;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3787,394,0 chrXV 379978 . C T 5698.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5698,601,0 chrXV 380023 . T C 4929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.6982;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=1.134;QD=24.77;ReadPosRankSum=1.697;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:1,196:199:99:4929,523,0 chrXV 380192 . G C 4815.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.26;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4815,511,0 chrXV 380297 . C A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=16.1513;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.76;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:3605,390,0 chrXV 380309 . C A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=15.30;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:3381,351,0 chrXV 380446 . T C 4202.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.9750;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.44;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4202,450,0 chrXV 380513 . T C 3977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=181;Dels=0.00;FS=4.723;HaplotypeScore=8.6917;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=0.258;QD=21.97;ReadPosRankSum=1.675;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3977,421,0 chrXV 380677 . A G 2803 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=21.90;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2836,297,0 chrXV 380683 . T C 2764 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=20.78;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2797,297,0 chrXV 380689 . G T 2722 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.78;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2755,288,0 chrXV 380728 . C T 2431 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.6296;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.60;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2464,261,0 chrXV 380751 . A G 2466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.235;QD=20.55;ReadPosRankSum=1.703;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2499,270,0 chrXV 380935 . G C 2976 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=25.01;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:3009,321,0 chrXV 380964 . A G 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=3.802;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.962;QD=25.94;ReadPosRankSum=1.636;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2835,300,0 chrXV 381124 . G C 2855 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2888,309,0 chrXV 381361 . G A 4293.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.08;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4293,462,0 chrXV 381445 . G A 5910.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.22;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5910,607,0 chrXV 381487 . A G 4958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.688;DP=240;Dels=0.00;FS=9.085;HaplotypeScore=24.8356;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-1.973;QD=20.66;ReadPosRankSum=3.132;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:4,235:240:99:4958,526,0 chrXV 381497 . C G 4130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=216;Dels=0.00;FS=3.331;HaplotypeScore=16.9701;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=1.568;QD=19.12;ReadPosRankSum=1.535;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:1,210:216:99:4130,456,0 chrXV 381556 . A G 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=5.305;HaplotypeScore=23.3395;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=-0.951;QD=13.74;ReadPosRankSum=1.712;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:1,172:174:99:2424,258,0 chrXV 381571 . T C 2490 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=27.6517;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=10.51;SB=-3.066e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:2523,276,0 chrXV 381739 . C T 5357.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=14.2770;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.19;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5357,577,0 chrXV 381777 . A G 4779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=220;Dels=0.00;FS=3.522;HaplotypeScore=16.8339;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.930;QD=21.72;ReadPosRankSum=1.684;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:1,215:220:99:4779,508,0 chrXV 382144 . C T 5837.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-2.905e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5837,619,0 chrXV 382459 . A G 4685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.8942;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-2.202;QD=23.54;ReadPosRankSum=2.226;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4685,496,0 chrXV 382531 . A G 3846.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=21.73;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3846,405,0 chrXV 382535 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=21.53;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3767,396,0 chrXV 382582 . C T 3885.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.1111;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.58;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3885,406,0 chrXV 382678 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.85;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3339,351,0 chrXV 382816 . C T 2655 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.50;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2688,276,0 chrXV 383156 . C T 3123 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.15;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3156,342,0 chrXV 383527 . A T 967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.022;DP=52;Dels=0.00;FS=7.194;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.119;QD=18.60;ReadPosRankSum=2.308;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:1000,105,0 chrXV 383674 . G A 3270.01 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.80;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3270,337,0 chrXV 383827 . C T 5721.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.26;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5721,604,0 chrXV 383991 . A G 4425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.206;QD=23.17;ReadPosRankSum=1.678;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4425,460,0 chrXV 384208 . C T 3989.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.93;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3989,409,0 chrXV 384314 . G T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.2322;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.07;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3312,337,0 chrXV 384316 . A G 3306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=164;Dels=0.00;FS=5.501;HaplotypeScore=2.8662;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.393;QD=20.16;ReadPosRankSum=2.908;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3306,354,0 chrXV 384545 . T C 2127 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=22.39;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2160,237,0 chrXV 384569 . A G 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=78;Dels=0.00;FS=7.821;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;MQRankSum=-1.185;QD=20.05;ReadPosRankSum=2.355;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1597,177,0 chrXV 384592 . C A 1863 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=78.7484;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;QD=19.61;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1896,198,0 chrXV 384665 . A G 2539 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=0;QD=18.27;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2572,279,0 chrXV 384669 . A G 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=3.765;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;MQRankSum=-0.879;QD=16.89;ReadPosRankSum=1.632;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2364,249,0 chrXV 384678 . T C 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=0;MQRankSum=-1.185;QD=15.95;ReadPosRankSum=1.680;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2155,243,0 chrXV 384696 . A G 1820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.219;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.36;MQ0=0;MQRankSum=-0.974;QD=14.22;ReadPosRankSum=1.678;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:1853,201,0 chrXV 384702 . G A 1832 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=34.26;MQ0=0;QD=14.54;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1865,195,0 chrXV 384732 . T A 1471 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.08;MQ0=0;QD=15.16;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1504,159,0 chrXV 384747 . A G 1008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.26;MQ0=0;MQRankSum=-0.787;QD=13.09;ReadPosRankSum=1.687;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1041,114,0 chrXV 384775 . C T 896 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.97;MQ0=0;QD=14.69;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:929,102,0 chrXV 384785 . C A 839 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.08;MQ0=0;QD=15.83;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:872,102,0 chrXV 384786 . G A 863 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.85;MQ0=0;QD=15.98;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:896,105,0 chrXV 384791 . G C 785 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.96;MQ0=0;QD=15.10;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:818,99,0 chrXV 384864 . G A 2617 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=40.51;MQ0=0;QD=18.96;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2650,285,0 chrXV 384919 . C A 3644.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;QD=24.29;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3644,381,0 chrXV 384942 . A G 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;MQRankSum=-0.091;QD=23.30;ReadPosRankSum=2.287;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2852,312,0 chrXV 384994 . A G 363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.900;DP=40;Dels=0.00;FS=10.831;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;MQRankSum=1.232;QD=9.07;ReadPosRankSum=1.386;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:3,37:40:45:396,45,0 chrXV 385004 . G A 521 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=16.28;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:60:554,60,0 chrXV 385035 . C T 811 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;QD=18.86;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:844,90,0 chrXV 385049 . A T 853 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.96;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:93:886,93,0 chrXV 385051 . C T 857 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.02;MQ0=0;QD=18.63;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:93:890,93,0 chrXV 385066 . G A 999 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.03;MQ0=0;QD=16.93;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1032,123,0 chrXV 385067 . A G 984 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=0;QD=16.40;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1017,120,0 chrXV 385112 . C T 2041 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;QD=19.82;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2074,231,0 chrXV 385189 . C T 1260 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.14;MQ0=0;QD=15.00;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1293,144,0 chrXV 385199 . T C 1064 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=33.58;MQ0=0;QD=13.82;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1097,120,0 chrXV 385213 . G A 519.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.039;DP=149;Dels=0.00;FS=0.682;HaplotypeScore=23.0732;MLEAC=1;MLEAF=0.500;MQ=31.51;MQ0=0;MQRankSum=-1.403;QD=3.48;ReadPosRankSum=5.382;SB=-3.100e+02 GT:AD:DP:GQ:PL 0/1:102,47:149:99:549,0,252 chrXV 385320 . A T 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=101;Dels=0.00;FS=4.992;HaplotypeScore=93.9749;MLEAC=2;MLEAF=1.00;MQ=31.26;MQ0=0;MQRankSum=1.355;QD=0.46;ReadPosRankSum=1.629;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:9:78,9,0 chrXV 385326 . A T 2449 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=88.2766;MLEAC=2;MLEAF=1.00;MQ=32.80;MQ0=0;QD=22.68;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2482,261,0 chrXV 385377 . C T 3987.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=13.4983;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;QD=23.87;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3987,420,0 chrXV 385418 . A G 3813.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.2312;MLEAC=2;MLEAF=1.00;MQ=40.07;MQ0=0;QD=22.04;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3813,414,0 chrXV 385443 . C A 3065 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=35.66;MQ0=0;QD=20.99;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3098,336,0 chrXV 385488 . G A 1447 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.97;MQ0=0;QD=16.63;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1480,159,0 chrXV 385489 . T C 1422 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.97;MQ0=0;QD=16.34;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1455,159,0 chrXV 385492 . T A 1444 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.65;MQ0=0;QD=16.60;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1477,156,0 chrXV 385510 . A G 1614 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=15.82;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1647,177,0 chrXV 385526 . G A 1345 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=32.09;MQ0=0;QD=13.45;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1378,147,0 chrXV 385570 . A T 2303 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;QD=17.45;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2336,240,0 chrXV 385575 . T A 2287 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=16.57;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2320,246,0 chrXV 385581 . T A 2216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=150;Dels=0.00;FS=12.013;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=43.05;MQ0=0;MQRankSum=-1.434;QD=14.77;ReadPosRankSum=2.269;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:2,148:150:99:2249,240,0 chrXV 385641 . G C 1182 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=83.1135;MLEAC=2;MLEAF=1.00;MQ=39.88;MQ0=0;QD=11.15;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,102:106:99:1215,138,0 chrXV 385654 . A T 46.97 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=73.1497;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;QD=0.50;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:9:79,9,0 chrXV 385655 . A T 46.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=73.1497;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;MQRankSum=-0.987;QD=0.50;ReadPosRankSum=1.695;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:9:79,9,0 chrXV 385716 . A T 1090 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.46;MQ0=0;QD=20.96;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1123,120,0 chrXV 385782 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;QD=22.25;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1635,171,0 chrXV 385806 . G A 1823 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=25.32;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1856,189,0 chrXV 385865 . A G 1716 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=39.08;MQ0=0;QD=23.19;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1749,189,0 chrXV 385934 . G A 967 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=15.85;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1000,108,0 chrXV 385938 . G C 912 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=15.46;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:945,102,0 chrXV 385940 . G A 915 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=15.51;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:948,102,0 chrXV 385971 . T A 1082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.07;MQ0=0;MQRankSum=-1.138;QD=15.46;ReadPosRankSum=1.633;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1115,120,0 chrXV 385998 . G A 990 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;QD=15.97;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1023,111,0 chrXV 385999 . A G 984 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=15.37;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1017,111,0 chrXV 386061 . A T 1639 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;QD=18.01;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1672,177,0 chrXV 386067 . A G 1588 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=17.08;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1621,171,0 chrXV 386119 . C G 1820 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=19.57;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1853,195,0 chrXV 386156 . A C 2116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=103;Dels=0.00;FS=4.523;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;MQRankSum=-0.170;QD=20.54;ReadPosRankSum=1.698;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2149,225,0 chrXV 386205 . T C 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;MQRankSum=-0.948;QD=22.73;ReadPosRankSum=1.699;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2442,261,0 chrXV 386216 . G T 2522 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=21.74;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2555,273,0 chrXV 386226 . A G 2627 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.9156;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=21.02;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2660,282,0 chrXV 386292 . C T 2966 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=22.30;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2999,312,0 chrXV 386310 . G A 3153 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=23.53;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3186,327,0 chrXV 386386 . G A 3779.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=24.22;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3779,388,0 chrXV 386436 . C T 3506.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=23.53;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3506,366,0 chrXV 386446 . A G 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=3.159;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=1.337;QD=20.56;ReadPosRankSum=1.662;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3158,351,0 chrXV 386470 . A C 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.356;DP=154;Dels=0.00;FS=13.791;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=0.863;QD=20.36;ReadPosRankSum=3.356;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:4,149:154:99:3169,339,0 chrXV 386503 . T A 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.366;DP=151;Dels=0.00;FS=8.518;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-2.184;QD=20.18;ReadPosRankSum=3.366;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:4,147:151:99:3080,327,0 chrXV 386524 . A G 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.764;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=0.849;QD=21.68;ReadPosRankSum=1.688;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3404,349,0 chrXV 386540 . G A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.97;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3565,381,0 chrXV 387059 . C A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.09;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3375,349,0 chrXV 387926 . T C 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=82;Dels=0.00;FS=8.617;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.953;QD=21.26;ReadPosRankSum=1.646;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:1,79:82:99:1776,189,0 chrXV 388702 . A G 4215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=3.496;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.345;QD=24.36;ReadPosRankSum=1.691;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:1,169:173:99:4215,445,0 chrXV 388869 . T G 3560.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.84;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3560,384,0 chrXV 388886 . C T 3391.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.55;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3391,352,0 chrXV 388890 . A T 3472.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.1441;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.30;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3472,352,0 chrXV 389116 . A G 4905.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=24.16;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4905,526,0 chrXV 389141 . A G 4567.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=24.04;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4567,501,0 chrXV 389171 . T C 4679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.634;DP=203;Dels=0.00;FS=11.520;HaplotypeScore=13.3150;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=2.077;QD=23.05;ReadPosRankSum=3.665;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:5,198:203:99:4679,504,0 chrXV 389237 . T G 4833.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.6857;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=24.78;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4833,522,0 chrXV 389628 . C A 1855 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.90;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1888,195,0 chrXV 390355 . T A 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.105;QD=24.55;ReadPosRankSum=1.709;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3658,376,0 chrXV 390363 . G C 3437.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.91;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3437,363,0 chrXV 390445 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.46;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3261,345,0 chrXV 390482 . G T 3649.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.33;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3649,384,0 chrXV 390617 . G T 4587.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=5.1272;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.94;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,226:230:99:4587,478,0 chrXV 390618 . C T 4587.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=4.2207;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.94;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:4587,478,0 chrXV 390692 . A G 4972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=225;Dels=0.00;FS=3.269;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=1.455;QD=22.10;ReadPosRankSum=1.701;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:4972,532,0 chrXV 390795 . G T 6471.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.79;SB=-3.155e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:6471,673,0 chrXV 390986 . A G 4382.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.13;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4382,480,0 chrXV 391203 . A T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.17;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3335,357,0 chrXV 391236 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.48;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3068,315,0 chrXV 391341 . G A 3673.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.26;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3673,390,0 chrXV 391349 . T C 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=4.829;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=1.071;QD=21.77;ReadPosRankSum=1.709;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3353,372,0 chrXV 391445 . C A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.02;FS=0.000;HaplotypeScore=17.3971;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.03;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3238,333,0 chrXV 391446 . G A 3178 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.02;FS=0.000;HaplotypeScore=8.6986;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.62;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3211,327,0 chrXV 391475 . A G 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=178;Dels=0.00;FS=6.021;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.709;QD=19.20;ReadPosRankSum=1.653;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:3418,369,0 chrXV 391682 . G T 5583.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.6743;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.98;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:5583,592,0 chrXV 391813 . T G 4181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.6510;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.063;QD=20.70;ReadPosRankSum=1.698;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4181,462,0 chrXV 391953 . C T 3121 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.3991;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=22.62;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3154,322,0 chrXV 392258 . G A 3134 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3167,327,0 chrXV 392644 . T C 5310.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.13;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5310,565,0 chrXV 392686 . G A 5955.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=11.8338;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.65;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:5955,637,0 chrXV 392767 . A T 5349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=238;Dels=0.00;FS=2.840;HaplotypeScore=28.1269;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.438;QD=22.47;ReadPosRankSum=2.429;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:5349,562,0 chrXV 392963 . C T 4169.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.71;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4169,433,0 chrXV 393076 . G T 3779.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.2153;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.92;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3779,396,0 chrXV 393128 . A G 3766.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.10;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3766,405,0 chrXV 393162 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.26;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2925,309,0 chrXV 393187 . T C 2840 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.35;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2873,306,0 chrXV 393217 . G A 3531.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.93;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3531,364,0 chrXV 393292 . G A 4317.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.69;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4317,439,0 chrXV 393310 . T C 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-1.632;QD=20.29;ReadPosRankSum=1.712;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3510,381,0 chrXV 393383 . G C 3461.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.4481;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.20;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3461,369,0 chrXV 393430 . T C 4473.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.0864;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=25.27;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4473,477,0 chrXV 394003 . G A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3833,385,0 chrXV 394090 . T G 4522.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.5677;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.80;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4522,495,0 chrXV 394456 . T C 2935 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.4388;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.75;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2968,315,0 chrXV 394567 . A G 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=151;Dels=0.00;FS=2.577;HaplotypeScore=8.4634;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.660;QD=23.60;ReadPosRankSum=2.940;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3563,378,0 chrXV 395238 . T C 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=191;Dels=0.00;FS=12.395;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.228;QD=23.06;ReadPosRankSum=2.931;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:3,187:191:99:4405,463,0 chrXV 395268 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=19.62;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3668,390,0 chrXV 395279 . A G 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.504;DP=173;Dels=0.00;FS=3.010;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.665;QD=19.42;ReadPosRankSum=-0.826;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3360,341,0 chrXV 395321 . T C 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=170;Dels=0.00;FS=3.034;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.519;QD=20.92;ReadPosRankSum=2.406;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:3557,384,0 chrXV 395713 . C T 3939.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.17;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3939,412,0 chrXV 395734 . T G 3335.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.52;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3335,354,0 chrXV 396070 . T C 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7281;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.117;QD=24.07;ReadPosRankSum=1.602;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3234,357,0 chrXV 396438 . C T 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.642;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-1.460;QD=22.55;ReadPosRankSum=-0.078;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4036,405,0 chrXV 396447 . A C 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=2.988;HaplotypeScore=5.5413;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.350;QD=21.66;ReadPosRankSum=2.407;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3725,408,0 chrXV 396793 . A G 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.201;QD=20.60;ReadPosRankSum=1.682;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2876,318,0 chrXV 396805 . G A 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.000;QD=21.44;ReadPosRankSum=0.027;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2799,291,0 chrXV 397084 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.68;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3623,390,0 chrXV 397192 . A G 3977.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.53;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3977,423,0 chrXV 398467 . A G 4080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=173;Dels=0.00;FS=3.033;HaplotypeScore=18.0190;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.907;QD=23.58;ReadPosRankSum=2.392;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:4080,432,0 chrXV 399654 . T C 4138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.995;QD=23.51;ReadPosRankSum=1.672;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:4138,441,0 chrXV 400131 . T C 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=133;Dels=0.00;FS=2.954;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.527;QD=22.35;ReadPosRankSum=2.339;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3005,315,0 chrXV 401275 . G A 4377.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.3565;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:4377,463,0 chrXV 402475 . T A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.17;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3457,358,0 chrXV 402498 . A G 2843 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.21;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2876,303,0 chrXV 402509 . A G 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=6.130;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=0.112;QD=21.71;ReadPosRankSum=2.328;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2682,291,0 chrXV 403103 . T G 3596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=150;Dels=0.00;FS=2.863;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.158;QD=23.97;ReadPosRankSum=2.416;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:2,146:150:99:3596,387,0 chrXV 403168 . A G 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=4.381;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.611;QD=24.41;ReadPosRankSum=1.712;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4174,462,0 chrXV 403351 . T C 4739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=195;Dels=0.00;FS=3.358;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.222;QD=24.30;ReadPosRankSum=1.697;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4739,505,0 chrXV 404905 . C G 4074.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4074,435,0 chrXV 405535 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3271,351,0 chrXV 407036 . T C 3799.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.83;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3799,405,0 chrXV 407363 . T G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3264,366,0 chrXV 407624 . G A 4794.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.39;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4794,502,0 chrXV 407687 . C T 7679.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=26.12;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:0,294:294:99:7679,808,0 chrXV 407738 . G A 7633.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=14.7764;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=24.31;SB=-3.489e+03 GT:AD:DP:GQ:PL 1/1:0,314:314:99:7633,829,0 chrXV 407771 . C T 6884.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=14.3942;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=24.94;SB=-3.160e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:6884,718,0 chrXV 407992 . T C 4008.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.14;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4008,426,0 chrXV 408177 . T C 3336.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=25.27;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3336,366,0 chrXV 408523 . T C 5842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.350;DP=237;Dels=0.00;FS=8.151;HaplotypeScore=13.6412;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=2.271;QD=24.65;ReadPosRankSum=3.328;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:4,232:237:99:5842,619,0 chrXV 408658 . A G 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-1.009;QD=20.22;ReadPosRankSum=1.713;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3700,399,0 chrXV 408668 . C A 3479.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.46;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3479,369,0 chrXV 408874 . A G 5323.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.6942;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.87;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5323,597,0 chrXV 408919 . A G 4284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=4.072;HaplotypeScore=16.7205;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=0.266;QD=22.43;ReadPosRankSum=1.714;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:4284,459,0 chrXV 408953 . C A 5375.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=16.1083;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.07;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5375,556,0 chrXV 409147 . C T 6166.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=18.9517;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.44;SB=-3.317e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:6166,646,0 chrXV 409478 . A G 4398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=188;Dels=0.00;FS=5.839;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.097;QD=23.39;ReadPosRankSum=2.919;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:3,183:188:99:4398,463,0 chrXV 409785 . G C 2930 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.44;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2963,318,0 chrXV 410064 . A G 3489.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.90;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3489,378,0 chrXV 410118 . A T 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.131;DP=154;Dels=0.00;FS=10.759;HaplotypeScore=6.5766;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.575;QD=23.07;ReadPosRankSum=2.262;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3553,348,0 chrXV 410132 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.14;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3244,345,0 chrXV 410471 . G A 3207 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.30;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3240,334,0 chrXV 410731 . A T 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=100;Dels=0.00;FS=3.622;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-0.052;QD=23.48;ReadPosRankSum=1.697;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2381,243,0 chrXV 410754 . G C 2447 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.09;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2480,273,0 chrXV 410873 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.40;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2903,300,0 chrXV 411025 . C T 2517 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.02;FS=0.000;HaplotypeScore=10.2759;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=18.11;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2550,267,0 chrXV 411026 . A G 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=139;Dels=0.02;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=-0.834;QD=17.68;ReadPosRankSum=1.706;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2490,267,0 chrXV 411119 . A G 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=148;Dels=0.00;FS=2.589;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.221;QD=21.76;ReadPosRankSum=2.952;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:3,144:148:99:3253,348,0 chrXV 411250 . A G 3174 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.6717;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=24.60;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3207,336,0 chrXV 411283 . A G 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.4124;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=1.453;QD=22.71;ReadPosRankSum=1.676;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2872,303,0 chrXV 411421 . C T 3034 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3067,324,0 chrXV 411579 . G A 3560.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9575;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.57;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3560,367,0 chrXV 411673 . C T 4730.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4730,499,0 chrXV 411900 . C A 5343.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=11.3642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-3.148e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5343,547,0 chrXV 412174 . C T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.3462;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.18;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3726,382,0 chrXV 412369 . C A 2733 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.16;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2766,294,0 chrXV 412390 . A T 2893 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1119;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.60;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2926,312,0 chrXV 412468 . A G 2541 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.31;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2574,273,0 chrXV 412613 . G T 1655 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=19.02;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1688,174,0 chrXV 412659 . G A 875 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=15.35;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:96:908,96,0 chrXV 412712 . C T 344 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=13.23;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:39:377,39,0 chrXV 412721 . A G 389 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=13.89;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:45:422,45,0 chrXV 412752 . C T 764 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=19.59;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:84:797,84,0 chrXV 412938 . G A 2093 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=20.93;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2126,219,0 chrXV 412945 . G C 1941 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.41;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1974,213,0 chrXV 413171 . T C 4459.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.4984;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=24.64;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4459,474,0 chrXV 413669 . G A 1423 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.23;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1456,153,0 chrXV 413773 . G A 2517 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=19.82;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2550,276,0 chrXV 413792 . T C 1985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-1.699;QD=18.38;ReadPosRankSum=1.600;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:1,104:108:99:2018,216,0 chrXV 414198 . A T 4097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=162;Dels=0.02;FS=5.202;HaplotypeScore=8.6416;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-0.577;QD=25.29;ReadPosRankSum=1.689;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4097,424,0 chrXV 414403 . G C 3090 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.74;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3123,348,0 chrXV 414442 . G T 2817 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=18.78;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:2850,291,0 chrXV 414454 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.4161;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.50;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3012,318,0 chrXV 415035 . A C 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=174;Dels=0.00;FS=4.135;HaplotypeScore=12.9773;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.780;QD=23.92;ReadPosRankSum=1.692;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:4162,456,0 chrXV 415167 . C T 4106.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.60;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4106,424,0 chrXV 415283 . C A 4385.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.3886;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=24.23;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4385,448,0 chrXV 415299 . T C 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=168;Dels=0.00;FS=6.933;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=1.872;QD=22.63;ReadPosRankSum=2.420;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3802,405,0 chrXV 415373 . G A 3203 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=22.72;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3236,334,0 chrXV 415419 . T C 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=3.586;HaplotypeScore=11.0324;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=1.530;QD=21.54;ReadPosRankSum=1.707;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3006,327,0 chrXV 415455 . C T 2782 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=21.73;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2815,294,0 chrXV 415503 . A G 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=138;Dels=0.00;FS=2.932;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.953;QD=22.05;ReadPosRankSum=2.414;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3076,336,0 chrXV 415560 . G T 2314 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;QD=18.08;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2347,246,0 chrXV 415569 . T C 2076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=3.487;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.22;MQ0=0;MQRankSum=-0.485;QD=16.48;ReadPosRankSum=1.704;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2109,225,0 chrXV 415593 . C T 2130 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=134;Dels=0.00;FS=3.039;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.80;MQ0=0;MQRankSum=0.303;QD=15.90;ReadPosRankSum=2.340;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2163,222,0 chrXV 415599 . T C 2171 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;MQRankSum=-0.872;QD=15.85;ReadPosRankSum=1.707;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2204,237,0 chrXV 415601 . G A 2171 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;QD=15.96;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2204,231,0 chrXV 415659 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=21.66;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2481,258,0 chrXV 415689 . A G 2411 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=23.18;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2444,261,0 chrXV 415710 . T C 2151 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.51;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2184,237,0 chrXV 415728 . T C 2267 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.1228;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.19;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2300,246,0 chrXV 415842 . C T 3143 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=25.55;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3176,328,0 chrXV 415943 . C T 2176 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=22.20;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2209,222,0 chrXV 416019 . T C 1594 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.70;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1627,183,0 chrXV 416056 . T A 1688 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=22.81;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1721,183,0 chrXV 416118 . T C 1265 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;QD=18.07;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1298,138,0 chrXV 416122 . T G 1221 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.60;MQ0=0;QD=17.70;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1254,135,0 chrXV 416125 . G C 1174 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.85;MQ0=0;QD=18.06;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1207,129,0 chrXV 416158 . G A 715 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.56;MQ0=0;QD=20.43;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:78:748,78,0 chrXV 416444 . G A 2034 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2067,216,0 chrXV 416506 . A G 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=90;Dels=0.00;FS=2.723;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.512;QD=21.97;ReadPosRankSum=2.394;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:2,87:90:99:2010,210,0 chrXV 416605 . C T 2311 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.5601;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.33;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2344,249,0 chrXV 416779 . A G 2865 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.04;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2898,324,0 chrXV 416880 . T C 4270.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.20;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4270,459,0 chrXV 417133 . A G 4883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=19.0726;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.093;QD=23.48;ReadPosRankSum=1.682;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4883,520,0 chrXV 417176 . G A 5276.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.9572;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5276,562,0 chrXV 417236 . G A 4919.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.8609;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.23;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4919,508,0 chrXV 417481 . A G 6488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=254;Dels=0.00;FS=11.091;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.945;QD=25.54;ReadPosRankSum=2.941;SB=-2.915e+03 GT:AD:DP:GQ:PL 1/1:3,251:254:99:6488,682,0 chrXV 417628 . T C 5571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.7964;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=2.202;QD=22.37;ReadPosRankSum=1.965;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:2,246:249:99:5571,586,0 chrXV 417693 . T C 4817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=221;Dels=0.00;FS=4.596;HaplotypeScore=15.8155;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.925;QD=21.80;ReadPosRankSum=1.700;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:1,218:221:99:4817,525,0 chrXV 417733 . T C 3663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=4.593;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.633;QD=21.93;ReadPosRankSum=1.711;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3663,390,0 chrXV 417792 . G A 2967 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.0269;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.82;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3000,312,0 chrXV 417801 . T C 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=138;Dels=0.01;FS=8.573;HaplotypeScore=8.2923;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.913;QD=21.26;ReadPosRankSum=2.287;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2967,321,0 chrXV 417871 . A G 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=129;Dels=0.00;FS=2.593;HaplotypeScore=17.1962;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.758;QD=23.00;ReadPosRankSum=2.946;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:3000,318,0 chrXV 418052 . C T 3072 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=24.58;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3105,327,0 chrXV 418252 . C A 3273.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=24.43;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3273,334,0 chrXV 418384 . A C 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.146;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.750;QD=19.28;ReadPosRankSum=2.328;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1595,177,0 chrXV 418470 . T C 2229 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=22.74;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2262,237,0 chrXV 418511 . T C 2238 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=22.61;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2271,243,0 chrXV 418530 . G A 1989 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=23.13;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2022,210,0 chrXV 418548 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=68.1009;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=0.28;SB=-8.768e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:6:53,6,0 chrXV 418723 . G A 2855 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.60;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2888,303,0 chrXV 418885 . T A 4105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=181;Dels=0.00;FS=3.034;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.330;QD=22.68;ReadPosRankSum=1.675;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4105,430,0 chrXV 418912 . C T 3982.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.89;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3982,412,0 chrXV 419065 . C T 4759.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.80;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4759,508,0 chrXV 419095 . C T 4178.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=25.48;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4178,433,0 chrXV 419347 . T C 3755.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;QD=21.83;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3755,396,0 chrXV 419359 . T C 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=39.36;MQ0=0;MQRankSum=-1.113;QD=18.39;ReadPosRankSum=1.713;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:1,179:183:99:3365,357,0 chrXV 419365 . C T 3463.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=38.04;MQ0=0;QD=19.03;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3463,358,0 chrXV 419377 . A G 2978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=190;Dels=0.00;FS=3.757;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;MQRankSum=0.875;QD=15.67;ReadPosRankSum=1.677;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3011,327,0 chrXV 419395 . T C 2530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.803;DP=177;Dels=0.00;FS=11.977;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=39.27;MQ0=0;MQRankSum=-2.563;QD=14.29;ReadPosRankSum=3.758;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:5,172:177:99:2563,282,0 chrXV 419404 . A T 2808 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=40.66;MQ0=0;QD=15.60;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2841,297,0 chrXV 419419 . A G 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=173;Dels=0.00;FS=3.024;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;MQRankSum=0.409;QD=14.86;ReadPosRankSum=2.392;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:2,169:173:99:2603,279,0 chrXV 419521 . G A 4083.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=19.7528;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=24.30;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4083,421,0 chrXV 419928 . G A 4599.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.1797;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.13;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4599,475,0 chrXV 420114 . T G 5727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=252;Dels=0.00;FS=9.563;HaplotypeScore=17.1074;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.404;QD=22.73;ReadPosRankSum=2.940;SB=-3.263e+03 GT:AD:DP:GQ:PL 1/1:3,248:252:99:5727,607,0 chrXV 420184 . T C 6978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.703;QD=23.82;ReadPosRankSum=1.673;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:1,292:293:99:6978,754,0 chrXV 420262 . C T 5011.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5011,517,0 chrXV 420334 . T C 6391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=276;Dels=0.00;FS=6.100;HaplotypeScore=10.5236;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.271;QD=23.16;ReadPosRankSum=2.396;SB=-3.615e+03 GT:AD:DP:GQ:PL 1/1:2,274:276:99:6391,694,0 chrXV 420367 . C T 7813.01 PASS AC=2;AF=1.00;AN=2;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=7.7341;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.89;SB=-3.925e+03 GT:AD:DP:GQ:PL 1/1:0,327:327:99:7813,796,0 chrXV 420715 . A G 3642.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.80;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3642,393,0 chrXV 420832 . A G 2421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.119;DP=134;Dels=0.00;FS=2.880;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=-0.725;QD=18.07;ReadPosRankSum=2.174;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2454,270,0 chrXV 420844 . A G 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=130;Dels=0.00;FS=2.985;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-0.658;QD=19.52;ReadPosRankSum=2.412;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2571,279,0 chrXV 420855 . A G 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-0.410;QD=19.03;ReadPosRankSum=1.706;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2545,270,0 chrXV 421051 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=24.91;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4010,415,0 chrXV 421339 . A G 3827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=204;Dels=0.00;FS=9.693;HaplotypeScore=11.7619;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.342;QD=18.76;ReadPosRankSum=1.559;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:3,200:204:99:3827,432,0 chrXV 421402 . A G 3165 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=15.29;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3198,354,0 chrXV 421530 . A G 4814.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.5147;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.14;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4814,513,0 chrXV 421685 . A G 3485.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.5905;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.62;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3485,375,0 chrXV 421698 . C G 3347.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.46;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3347,357,0 chrXV 421788 . T C 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=172;Dels=0.00;FS=11.939;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.288;QD=23.19;ReadPosRankSum=2.959;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:3988,421,0 chrXV 421850 . T C 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.017;DP=127;Dels=0.00;FS=8.189;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.817;QD=22.50;ReadPosRankSum=2.410;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,123:127:99:2890,312,0 chrXV 421884 . C T 2295 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.95;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2328,243,0 chrXV 422015 . T C 2367 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=23.67;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2400,255,0 chrXV 422038 . G A 2266 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=23.85;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2299,240,0 chrXV 422213 . G A 106.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;DP=77;Dels=0.00;FS=7.114;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.25;MQ0=0;MQRankSum=-4.404;QD=1.38;ReadPosRankSum=5.277;SB=-3.800e+02 GT:AD:DP:GQ:PL 0/1:11,66:77:99:136,0,176 chrXV 422245 . T C 1303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.07;MQ0=0;MQRankSum=-1.635;QD=12.18;ReadPosRankSum=1.538;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1336,144,0 chrXV 422248 . G A 1359 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.32;MQ0=0;QD=11.92;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:1392,150,0 chrXV 422316 . G A 2913 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.6386;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.90;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2946,303,0 chrXV 422344 . C T 3873.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=25.15;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3873,403,0 chrXV 422464 . A C 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;MQRankSum=-1.342;QD=25.01;ReadPosRankSum=1.683;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3576,375,0 chrXV 422594 . G A 2624 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=92.4636;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.83;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2657,273,0 chrXV 422665 . T C 2772 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=18.00;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2805,294,0 chrXV 422667 . A G 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=160;Dels=0.00;FS=7.161;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=-1.491;QD=16.63;ReadPosRankSum=2.419;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:2694,297,0 chrXV 422859 . C G 5493.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.2795;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.88;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5493,600,0 chrXV 422905 . A G 4481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=197;Dels=0.00;FS=2.992;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.193;QD=22.75;ReadPosRankSum=2.412;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4481,489,0 chrXV 423001 . A C 5240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=4.2219;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.647;QD=22.11;ReadPosRankSum=2.356;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:2,235:237:99:5240,553,0 chrXV 423064 . T C 4678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=218;Dels=0.00;FS=5.730;HaplotypeScore=14.2516;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.934;QD=21.46;ReadPosRankSum=1.700;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:4678,510,0 chrXV 423361 . G A 4314.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=3.1666;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.52;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4314,454,0 chrXV 423370 . T C 4298.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=9.8650;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=18.21;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:4298,457,0 chrXV 423589 . A G 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=184;Dels=0.00;FS=3.816;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.899;QD=21.78;ReadPosRankSum=1.694;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4007,432,0 chrXV 423598 . A C 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=3.826;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.871;QD=21.68;ReadPosRankSum=1.713;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:3967,426,0 chrXV 423805 . T C 3555.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.5852;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.42;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3555,387,0 chrXV 423829 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.11;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3427,375,0 chrXV 424102 . A G 4125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=5.793;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.819;QD=24.70;ReadPosRankSum=1.608;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4125,444,0 chrXV 424140 . G C 3774.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3774,402,0 chrXV 424216 . A C 4144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=185;Dels=0.00;FS=4.276;HaplotypeScore=13.9149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.256;QD=22.40;ReadPosRankSum=1.694;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,181:185:99:4144,450,0 chrXV 424297 . T A 5304.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.1124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5304,547,0 chrXV 424341 . T C 3916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=199;Dels=0.00;FS=6.778;HaplotypeScore=13.7167;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.167;QD=19.68;ReadPosRankSum=2.425;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:3916,429,0 chrXV 424523 . G T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.9327;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.52;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:3310,357,0 chrXV 424582 . T C 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=4.631;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.454;QD=20.16;ReadPosRankSum=1.704;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2493,261,0 chrXV 424606 . C T 2186 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=18.07;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2219,240,0 chrXV 424705 . G C 2941 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=26.03;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2974,309,0 chrXV 424779 . G C 2265 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0571;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.89;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2298,246,0 chrXV 424815 . G A 2139 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=73.2768;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=23.77;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2172,240,0 chrXV 424847 . C T 2021 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=22.46;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2054,222,0 chrXV 424870 . G C 1875 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=22.06;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1908,207,0 chrXV 424894 . A G 1870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;MQRankSum=-1.162;QD=21.74;ReadPosRankSum=1.691;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1903,204,0 chrXV 424963 . G A 3906.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.0763;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=23.82;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3906,420,0 chrXV 425041 . T C 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;MQRankSum=-1.429;QD=22.84;ReadPosRankSum=1.505;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3185,342,0 chrXV 425090 . G A 2470 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=22.87;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2503,258,0 chrXV 425092 . G A 2414 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=22.99;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2447,255,0 chrXV 425121 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=15.32;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2117,225,0 chrXV 425127 . C T 2344 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=17.49;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2377,249,0 chrXV 425151 . A G 2321 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=15.90;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2354,252,0 chrXV 425184 . G A 3167 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=42.52;MQ0=0;QD=17.40;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3200,333,0 chrXV 425185 . G A 3174 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=17.34;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3207,333,0 chrXV 425221 . G T 3486.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;QD=16.60;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:3486,372,0 chrXV 425229 . C T 3284.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;QD=15.64;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:3284,351,0 chrXV 425239 . T A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;QD=16.88;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3494,369,0 chrXV 425281 . G A 3713.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.6992;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=18.47;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3713,385,0 chrXV 425287 . C G 3553.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=18.04;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:3553,381,0 chrXV 425338 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=177;Dels=0.00;FS=4.194;HaplotypeScore=9.5099;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=0.217;QD=18.62;ReadPosRankSum=1.673;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3296,357,0 chrXV 425464 . T C 4597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=198;Dels=0.00;FS=4.274;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=0.052;QD=23.22;ReadPosRankSum=1.715;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4597,492,0 chrXV 425503 . A G 4449.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.1732;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=23.42;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4449,489,0 chrXV 425669 . C T 4067.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.10;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4067,418,0 chrXV 425800 . A G 4165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=174;Dels=0.00;FS=3.992;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.190;QD=23.94;ReadPosRankSum=1.632;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4165,447,0 chrXV 425872 . G A 4029.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.0562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4029,421,0 chrXV 425929 . G A 4363.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.9421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4363,451,0 chrXV 426333 . G A 1535 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.25;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1568,168,0 chrXV 426355 . G A 1494 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=24.49;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1527,162,0 chrXV 426558 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=23.46;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1511,156,0 chrXV 426621 . G C 200.23 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.8747;MLEAC=1;MLEAF=0.500;MQ=46.44;MQ0=0;QD=2.33;SB=-5.432e+02 GT:AD:DP:GQ:PL 1/1:0,71:86:27:233,27,0 chrXV 426624 . G C 364 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.3326;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=4.61;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,73:79:45:397,45,0 chrXV 426759 . C T 2718 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.23;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2751,279,0 chrXV 426767 . G C 2406 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.39;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2439,258,0 chrXV 426787 . T C 2239 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=19.47;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2272,246,0 chrXV 426838 . C T 4014.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=23.34;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4014,412,0 chrXV 427159 . C T 4181.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.8613;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=22.60;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4181,430,0 chrXV 427268 . C T 4543.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.01;FS=0.000;HaplotypeScore=22.9953;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=22.38;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4543,481,0 chrXV 427369 . C T 3640.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.03;FS=0.000;HaplotypeScore=12.0380;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=23.48;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3640,390,0 chrXV 427406 . T C 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.01;FS=3.680;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;MQRankSum=-0.847;QD=20.17;ReadPosRankSum=1.654;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2736,285,0 chrXV 427407 . A C 2646 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=19.46;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2679,285,0 chrXV 427559 . T C 4634.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.26;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4634,493,0 chrXV 427697 . C T 3993.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.5443;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.70;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,181:184:99:3993,403,0 chrXV 427713 . T C 3896.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.83;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3896,411,0 chrXV 427884 . T G 1682 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-8.581;DP=167;Dels=0.00;FS=9.157;HaplotypeScore=79.4626;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;MQRankSum=0.748;QD=10.07;ReadPosRankSum=-1.558;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:40,127:167:99:1715,198,0 chrXV 427887 . A G 1372 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=79.4626;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=8.47;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:1405,162,0 chrXV 427890 . T G 1087 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=79.4626;MLEAC=2;MLEAF=1.00;MQ=35.07;MQ0=0;QD=6.97;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,156:156:99:1120,129,0 chrXV 427896 . T G 558 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;QD=3.96;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:69:591,69,0 chrXV 427902 . A G 132.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.913;DP=131;Dels=0.00;FS=3.764;HaplotypeScore=1.9025;MLEAC=1;MLEAF=0.500;MQ=29.36;MQ0=0;MQRankSum=0.933;QD=1.01;ReadPosRankSum=-6.343;SB=-1.250e+02 GT:AD:DP:GQ:PL 0/1:46,85:131:99:162,0,401 chrXV 427905 . T A 656 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.199;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=28.5121;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;MQRankSum=0.559;QD=4.69;ReadPosRankSum=6.046;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:14,126:140:78:689,78,0 chrXV 427911 . G T 356.37 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=6.817;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=48.2524;MLEAC=1;MLEAF=0.500;MQ=28.84;MQ0=0;MQRankSum=1.164;QD=2.51;ReadPosRankSum=7.232;SB=-1.137e+01 GT:AD:DP:GQ:PL 1/1:30,46:142:23:389,23,0 chrXV 427947 . G A 121.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.892;DP=151;Dels=0.01;FS=4.444;HaplotypeScore=181.8749;MLEAC=1;MLEAF=0.500;MQ=29.94;MQ0=0;MQRankSum=-1.960;QD=0.80;ReadPosRankSum=-0.720;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:125,19:149:68:151,0,68 chrXV 427953 . A G 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.565;DP=143;Dels=0.00;FS=26.489;HaplotypeScore=148.0226;MLEAC=1;MLEAF=0.500;MQ=30.15;MQ0=0;MQRankSum=0.214;QD=0.17;ReadPosRankSum=5.569;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/1:54,89:143:55:55,0,87 chrXV 427962 . A T 90.27 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;DP=164;Dels=0.01;FS=14.389;HaplotypeScore=307.4808;MLEAC=1;MLEAF=0.500;MQ=29.80;MQ0=1;MQRankSum=0.109;QD=0.55;ReadPosRankSum=0.372;SB=-1.753e+02 GT:AD:DP:GQ:PL 0/1:80,47:163:9:120,0,9 chrXV 427992 . G A 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.168;DP=218;Dels=0.00;FS=17.180;HaplotypeScore=126.5121;MLEAC=1;MLEAF=0.500;MQ=31.06;MQ0=1;MQRankSum=-1.260;QD=0.16;ReadPosRankSum=-3.167;SB=-1.260e+02 GT:AD:DP:GQ:PL 0/1:175,42:218:60:64,0,60 chrXV 427995 . G A 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.265;DP=218;Dels=0.00;FS=8.818;HaplotypeScore=215.7138;MLEAC=1;MLEAF=0.500;MQ=31.10;MQ0=1;MQRankSum=0.207;QD=0.13;ReadPosRankSum=-4.338;SB=-1.280e+02 GT:AD:DP:GQ:PL 0/1:162,55:218:59:59,0,60 chrXV 427998 . G A 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.091;DP=222;Dels=0.00;FS=8.665;HaplotypeScore=305.8434;MLEAC=1;MLEAF=0.500;MQ=31.11;MQ0=1;MQRankSum=-0.203;QD=0.17;ReadPosRankSum=-3.091;SB=-1.000e+02 GT:AD:DP:GQ:PL 0/1:167,53:222:60:67,0,60 chrXV 428004 . A G 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-7.426;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=378.3681;MLEAC=2;MLEAF=1.00;MQ=31.11;MQ0=1;MQRankSum=-0.617;QD=0.26;ReadPosRankSum=1.172;SB=-1.697e+01 GT:AD:DP:GQ:PL 1/1:130,48:178:9:78,9,0 chrXV 428007 . A G 12.30 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.753;DP=182;Dels=0.00;FS=4.839;HaplotypeScore=485.4812;MLEAC=1;MLEAF=0.500;MQ=31.55;MQ0=1;MQRankSum=0.659;QD=0.07;ReadPosRankSum=-4.107;SB=-9.203e+01 GT:AD:DP:GQ:PL 0/1:140,39:182:19:42,0,19 chrXV 428019 . A G 1288 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.746;DP=168;Dels=0.00;FS=47.046;HaplotypeScore=293.6531;MLEAC=2;MLEAF=1.00;MQ=34.63;MQ0=0;MQRankSum=-4.432;QD=7.67;ReadPosRankSum=3.717;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:21,147:168:99:1321,127,0 chrXV 428022 . A G 1495 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.766;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=110.8423;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=0;MQRankSum=-0.159;QD=8.59;ReadPosRankSum=1.065;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:5,168:174:99:1528,177,0 chrXV 428028 . A G 1632 SnpCluster AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=21.5916;MLEAC=2;MLEAF=1.00;MQ=37.17;MQ0=0;QD=8.54;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,191:191:99:1665,189,0 chrXV 428241 . G C 6813.01 filter AC=2;AF=1.00;AN=2;DP=361;Dels=0.00;FS=0.000;HaplotypeScore=20.5158;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=18.87;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:0,358:361:99:6813,756,0 chrXV 428453 . G A 5998.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=17.9494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-3.317e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5998,613,0 chrXV 429156 . T C 4332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.3094;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-1.371;QD=22.45;ReadPosRankSum=1.714;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4332,474,0 chrXV 429210 . T C 3659.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=19.78;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3659,405,0 chrXV 429219 . G A 3669.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=19.73;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3669,390,0 chrXV 429222 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=20.04;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3687,396,0 chrXV 429552 . C T 4234.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.26;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4234,445,0 chrXV 429767 . C T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=18.2628;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.82;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3423,355,0 chrXV 429834 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.3583;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.02;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3347,346,0 chrXV 429969 . A G 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=3.050;HaplotypeScore=6.7086;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-1.499;QD=25.30;ReadPosRankSum=2.401;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:2,99:102:99:2614,276,0 chrXV 430481 . G A 6273.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=19.1725;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.13;SB=-3.128e+03 GT:AD:DP:GQ:PL 1/1:0,257:260:99:6273,652,0 chrXV 430964 . A G 3541.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.83;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3541,387,0 chrXV 431225 . C T 3974.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.51;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3974,412,0 chrXV 431264 . T C 4301.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.9510;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.40;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4301,462,0 chrXV 431558 . G T 4197.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.3091;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.40;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4197,439,0 chrXV 431700 . G A 3525.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.04;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3525,375,0 chrXV 431849 . G C 3809.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.51;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3809,405,0 chrXV 432164 . G T 4277.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4358;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.01;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4277,439,0 chrXV 432275 . T C 4560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.1998;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.673;QD=25.62;ReadPosRankSum=1.673;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4560,478,0 chrXV 432347 . G A 3209 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.68;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3242,339,0 chrXV 432461 . T C 2792 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.31;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2825,297,0 chrXV 432563 . A C 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=123;Dels=0.00;FS=2.774;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.130;QD=24.63;ReadPosRankSum=2.390;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:3063,321,0 chrXV 432630 . C T 2384 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.33;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2417,255,0 chrXV 432666 . G A 1879 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.40;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1912,198,0 chrXV 432698 . A G 2172 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.16;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2205,249,0 chrXV 432763 . G C 2433 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2466,264,0 chrXV 432824 . T C 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.487;QD=24.15;ReadPosRankSum=1.697;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2448,264,0 chrXV 433405 . T C 3562.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.75;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3562,387,0 chrXV 433431 . T A 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=4.346;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.248;QD=22.76;ReadPosRankSum=1.656;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3128,321,0 chrXV 433548 . A T 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=1.173;QD=22.89;ReadPosRankSum=1.695;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2185,234,0 chrXV 433573 . A G 2045 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.5973;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.76;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2078,222,0 chrXV 433580 . G A 2070 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=23.00;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2103,219,0 chrXV 433685 . A T 2164 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.31;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2197,231,0 chrXV 434336 . G A 4054.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.7895;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.17;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4054,430,0 chrXV 434999 . A T 2516 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.87;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2549,276,0 chrXV 435038 . A G 2816 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.27;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2849,303,0 chrXV 435055 . T C 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.424;QD=23.17;ReadPosRankSum=2.264;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2790,294,0 chrXV 435177 . A G 3006 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.12;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3039,324,0 chrXV 435179 . A T 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=4.043;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.670;QD=22.67;ReadPosRankSum=1.656;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3139,327,0 chrXV 435266 . A G 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.3365;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=0.482;QD=23.22;ReadPosRankSum=2.388;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2820,297,0 chrXV 435528 . A G 1552 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1585,171,0 chrXV 435862 . G A 2402 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=6.8658;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.76;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2435,252,0 chrXV 436196 . C T 4024.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.47;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:4024,412,0 chrXV 436490 . C G 2776 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2809,300,0 chrXV 436610 . G C 1390 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.17;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1423,156,0 chrXV 436826 . T C 752 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=24.26;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:87:785,87,0 chrXV 436846 . C A 52.97 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=24.8393;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=1.61;SB=-2.721e+01 GT:AD:DP:GQ:PL 1/1:0,4:33:9:85,9,0 chrXV 436910 . A G 1153 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.53;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1186,126,0 chrXV 436950 . A G 1618 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.89;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1651,177,0 chrXV 437000 . T C 1606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.7482;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.176;QD=22.94;ReadPosRankSum=1.632;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1639,177,0 chrXV 437034 . T C 1818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.069;QD=24.24;ReadPosRankSum=1.686;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1851,201,0 chrXV 437180 . A C 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.263;QD=25.45;ReadPosRankSum=1.706;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3385,357,0 chrXV 437320 . T C 2824 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.56;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2857,303,0 chrXV 437324 . A G 2663 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.13;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2696,288,0 chrXV 437409 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=131;Dels=0.00;FS=7.427;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.347;QD=21.69;ReadPosRankSum=2.412;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2875,303,0 chrXV 437491 . G A 3780.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=24.08;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3780,399,0 chrXV 438026 . T A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=22.67;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4035,424,0 chrXV 438117 . A G 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.7451;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.326;QD=23.71;ReadPosRankSum=2.404;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3841,402,0 chrXV 438148 . T G 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=177;Dels=0.00;FS=17.367;HaplotypeScore=11.6605;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;MQRankSum=-1.659;QD=21.45;ReadPosRankSum=2.393;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:2,172:177:99:3797,408,0 chrXV 438163 . T C 3564.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=20.60;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3564,405,0 chrXV 438188 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=21.51;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2915,300,0 chrXV 438200 . G A 2648 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.69;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2681,279,0 chrXV 438262 . A G 1476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.192;QD=19.17;ReadPosRankSum=1.687;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1509,162,0 chrXV 438288 . T C 1263 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.37;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1296,138,0 chrXV 438541 . G C 1605 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=23.26;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1638,174,0 chrXV 438561 . C T 1538 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.97;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1571,162,0 chrXV 438605 . C T 2233 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=24.81;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2266,237,0 chrXV 438791 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=151.2575;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=0.12;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:6:51,6,0 chrXV 438827 . G A 4770.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=21.29;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4770,493,0 chrXV 438841 . A G 4479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=227;Dels=0.01;FS=8.831;HaplotypeScore=26.8191;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=0.479;QD=19.73;ReadPosRankSum=2.417;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:2,221:225:99:4479,483,0 chrXV 438948 . A G 3644.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.82;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3644,399,0 chrXV 438975 . A T 3784.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.73;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3784,391,0 chrXV 439047 . A T 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.912;QD=19.44;ReadPosRankSum=1.714;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3694,405,0 chrXV 439785 . G A 3787.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3787,397,0 chrXV 440015 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.68;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3560,390,0 chrXV 440271 . A C 3161 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.07;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3194,336,0 chrXV 440365 . C A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3259,342,0 chrXV 440656 . C T 4510.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.01;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4510,463,0 chrXV 440747 . A C 4325.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.38;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4325,462,0 chrXV 440825 . G A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.6945;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.42;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3384,360,0 chrXV 440873 . G A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.61;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3510,375,0 chrXV 440883 . A G 3315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.909;QD=18.21;ReadPosRankSum=1.713;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3315,354,0 chrXV 441214 . A G 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=157;Dels=0.00;FS=3.830;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.541;QD=21.21;ReadPosRankSum=1.710;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3330,363,0 chrXV 441222 . G C 3285.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=22.05;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3285,351,0 chrXV 441341 . A G 2623 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.0958;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2656,288,0 chrXV 441463 . A G 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=139;Dels=0.00;FS=3.305;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-0.266;QD=24.79;ReadPosRankSum=1.707;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:3446,366,0 chrXV 441487 . C T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.3071;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=24.10;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3350,357,0 chrXV 442427 . C T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.84;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3839,400,0 chrXV 442592 . A T 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=110;Dels=0.00;FS=3.037;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.682;QD=24.15;ReadPosRankSum=2.405;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2689,270,0 chrXV 442786 . T C 4416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.314;DP=177;Dels=0.00;FS=2.510;HaplotypeScore=11.1381;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=2.572;QD=24.95;ReadPosRankSum=2.937;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:3,173:177:99:4416,452,0 chrXV 442914 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.04;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3303,342,0 chrXV 443031 . T C 5001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=228;Dels=0.00;FS=3.307;HaplotypeScore=16.7915;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.359;QD=21.93;ReadPosRankSum=1.686;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:5001,529,0 chrXV 443071 . G C 4372.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.63;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,180:185:99:4372,468,0 chrXV 443155 . T G 4548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=200;Dels=0.00;FS=7.060;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.239;QD=22.74;ReadPosRankSum=2.364;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4548,495,0 chrXV 443357 . T G 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.549;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-0.712;QD=21.18;ReadPosRankSum=1.711;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3452,375,0 chrXV 443358 . T C 3556.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=21.17;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3556,384,0 chrXV 443424 . G T 2322 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.1517;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.19;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2355,243,0 chrXV 443587 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=23.21;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2493,258,0 chrXV 443601 . G A 2095 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=20.34;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2128,228,0 chrXV 443634 . A C 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=110;Dels=0.00;FS=7.074;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=0.839;QD=20.94;ReadPosRankSum=2.405;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2336,252,0 chrXV 443686 . C G 3012 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.49;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3045,321,0 chrXV 443717 . T A 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=15.4755;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.935;QD=22.76;ReadPosRankSum=1.622;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2946,324,0 chrXV 443793 . C A 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=117;Dels=0.03;FS=0.000;HaplotypeScore=6.0430;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=1.003;QD=17.10;ReadPosRankSum=-0.638;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2034,231,0 chrXV 443794 . T C 2031 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.03;FS=0.000;HaplotypeScore=6.0430;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=17.97;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2064,234,0 chrXV 444024 . G A 3727.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.59;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3727,382,0 chrXV 444178 . T C 4794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=192;Dels=0.00;FS=2.953;HaplotypeScore=7.9065;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.441;QD=24.97;ReadPosRankSum=2.373;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4794,502,0 chrXV 444289 . G A 3161 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.74;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3194,348,0 chrXV 445216 . T C 5260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=17.0197;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.701;QD=23.38;ReadPosRankSum=1.685;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:5260,562,0 chrXV 445648 . C T 5248.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.72;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5248,562,0 chrXV 445941 . C T 2200 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.5840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2233,240,0 chrXV 446451 . T C 3827.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.7432;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.38;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3827,405,0 chrXV 446484 . C T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.99;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3333,345,0 chrXV 447362 . T C 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.635;QD=23.30;ReadPosRankSum=1.698;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2410,261,0 chrXV 447858 . A G 5428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=224;Dels=0.00;FS=8.167;HaplotypeScore=16.4168;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.149;QD=24.23;ReadPosRankSum=2.394;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:2,220:224:99:5428,583,0 chrXV 447942 . C T 6904.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=18.2331;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.81;SB=-3.590e+03 GT:AD:DP:GQ:PL 1/1:0,290:290:99:6904,733,0 chrXV 448221 . T C 4171.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.5277;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.86;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4171,468,0 chrXV 448423 . T A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.185;DP=57;Dels=0.00;FS=7.145;HaplotypeScore=48.6459;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.517;QD=0.38;ReadPosRankSum=1.368;SB=-2.988e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:6:53,6,0 chrXV 448753 . T C 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:57,6,0 chrXV 448985 . A G 2068 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.05;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2101,222,0 chrXV 449105 . C T 3037 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.49;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3070,315,0 chrXV 449205 . A C 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=3.008;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.807;QD=21.04;ReadPosRankSum=2.303;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2852,309,0 chrXV 449353 . A G 2874 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.21;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2907,309,0 chrXV 449765 . G A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.52;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3489,393,0 chrXV 449867 . A C 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.1584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.142;QD=23.48;ReadPosRankSum=-1.388;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3311,348,0 chrXV 450043 . G A 4179.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.35;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4179,430,0 chrXV 450086 . T C 4218.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=22.6529;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=23.05;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4218,450,0 chrXV 450216 . C T 4183.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.63;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4183,433,0 chrXV 450301 . T C 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.9346;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-0.808;QD=20.40;ReadPosRankSum=1.713;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3672,393,0 chrXV 450315 . A C 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=186;Dels=0.00;FS=3.021;HaplotypeScore=8.1767;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.456;QD=19.32;ReadPosRankSum=2.304;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:3593,384,0 chrXV 450461 . G A 4969.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.0007;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.12;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4969,514,0 chrXV 450650 . C T 5477.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=22.0607;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.73;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5477,591,0 chrXV 450923 . T C 2038 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=10.24;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:2071,219,0 chrXV 450930 . T C 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=205;Dels=0.00;FS=9.628;HaplotypeScore=9.0253;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=-0.401;QD=10.53;ReadPosRankSum=2.390;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:2191,225,0 chrXV 451145 . A G 4039.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=20.50;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4039,435,0 chrXV 451154 . A G 3607.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.2592;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.04;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3607,384,0 chrXV 451172 . A C 3356.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=18.75;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3356,357,0 chrXV 451367 . C A 5072.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.4585;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=24.99;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5072,526,0 chrXV 451509 . A G 1498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.192;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.922;QD=19.45;ReadPosRankSum=-1.102;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1531,162,0 chrXV 451606 . A G 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.280;QD=20.25;ReadPosRankSum=2.401;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2078,213,0 chrXV 452290 . G A 5047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=228;Dels=0.00;FS=4.584;HaplotypeScore=11.8511;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.518;QD=22.14;ReadPosRankSum=-1.106;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:5047,523,0 chrXV 452446 . T C 4332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=179;Dels=0.00;FS=3.031;HaplotypeScore=11.8618;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.817;QD=24.20;ReadPosRankSum=2.422;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4332,460,0 chrXV 452881 . A G 3490.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.74;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3490,369,0 chrXV 453019 . A G 5374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=222;Dels=0.00;FS=9.082;HaplotypeScore=17.0920;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.772;QD=24.21;ReadPosRankSum=2.405;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:2,219:222:99:5374,565,0 chrXV 453055 . A G 5173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=215;Dels=0.00;FS=4.812;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=0.073;QD=24.06;ReadPosRankSum=1.684;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:5173,552,0 chrXV 453067 . C T 4483.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=22.30;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4483,474,0 chrXV 453073 . G A 4423.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.7360;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=22.12;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4423,460,0 chrXV 453574 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=3.825;HaplotypeScore=8.9972;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.390;QD=22.49;ReadPosRankSum=1.687;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3418,363,0 chrXV 453707 . T C 3289.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3289,348,0 chrXV 453762 . C T 2874 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2907,306,0 chrXV 453974 . T C 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=165;Dels=0.00;FS=5.881;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=2.419;QD=22.05;ReadPosRankSum=2.894;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:3,158:165:99:3639,390,0 chrXV 454256 . C T 3806.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.24;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3806,400,0 chrXV 454325 . T C 4076.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.52;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4076,450,0 chrXV 454559 . A G 3969.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3969,417,0 chrXV 454610 . C T 4513.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4513,480,0 chrXV 454944 . A G 5123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=198;Dels=0.00;FS=5.091;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.308;QD=25.87;ReadPosRankSum=1.714;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:5123,550,0 chrXV 455108 . T C 4559.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.57;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4559,495,0 chrXV 455183 . T C 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=169;Dels=0.00;FS=4.514;HaplotypeScore=11.3204;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.338;QD=21.08;ReadPosRankSum=1.605;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,163:169:99:3563,399,0 chrXV 455286 . G A 3779.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.3735;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.71;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3779,385,0 chrXV 455342 . T C 3339.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3339,357,0 chrXV 455594 . T C 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=6.601;HaplotypeScore=8.8963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.866;QD=25.77;ReadPosRankSum=2.394;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3402,357,0 chrXV 456978 . G A 3844.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3844,394,0 chrXV 457470 . A G 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.0741;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.416;QD=21.45;ReadPosRankSum=2.395;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3883,414,0 chrXV 457531 . T C 5169.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.82;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5169,544,0 chrXV 457889 . C T 3934.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.3639;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.84;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3934,409,0 chrXV 458139 . A G 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.721;QD=14.92;ReadPosRankSum=1.713;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:2794,300,0 chrXV 458312 . G A 4081.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.2764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4081,424,0 chrXV 458453 . G A 4073.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.46;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4073,424,0 chrXV 458617 . T G 2797 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6499;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.68;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2830,312,0 chrXV 458665 . G T 2778 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.34;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2811,291,0 chrXV 458781 . T A 2895 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2928,300,0 chrXV 458852 . C T 2762 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2666;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.30;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2795,288,0 chrXV 458886 . T C 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.064;QD=26.29;ReadPosRankSum=1.668;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2872,300,0 chrXV 459134 . C T 2841 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2874,297,0 chrXV 459840 . G A 3518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.261;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=13.0229;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.072;QD=23.30;ReadPosRankSum=0.177;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,147:151:99:3518,337,0 chrXV 459980 . G A 4665.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.01;FS=0.000;HaplotypeScore=12.5383;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.55;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4665,481,0 chrXV 460430 . A T 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=214;Dels=0.00;FS=3.241;HaplotypeScore=11.4217;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;MQRankSum=-1.634;QD=21.40;ReadPosRankSum=1.700;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4580,469,0 chrXV 460459 . A C 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.3481;MLEAC=2;MLEAF=1.00;MQ=36.43;MQ0=0;MQRankSum=-1.060;QD=13.66;ReadPosRankSum=1.508;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:2356,258,0 chrXV 460473 . G A 1673 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=11.62;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:1706,180,0 chrXV 460479 . T C 1370 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;QD=10.22;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1403,165,0 chrXV 460482 . A G 1491 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.59;MQ0=0;QD=11.21;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1524,168,0 chrXV 460485 . G A 1549 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.59;MQ0=0;QD=11.65;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1582,168,0 chrXV 460514 . T C 1341 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=10.48;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1374,156,0 chrXV 460530 . T A 1540 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=12.22;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1573,162,0 chrXV 460533 . A G 1505 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.32;MQ0=0;QD=12.65;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1538,165,0 chrXV 460539 . G A 1629 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.28;MQ0=0;QD=11.98;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:1662,174,0 chrXV 460572 . A G 2395 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.648;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.8614;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;MQRankSum=0.457;QD=13.23;ReadPosRankSum=1.672;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:2428,242,0 chrXV 460573 . A G 2499 SnpCluster AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.8614;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;QD=13.88;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2532,270,0 chrXV 460575 . G A 2530 SnpCluster AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.8614;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=13.90;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:2563,270,0 chrXV 460578 . A G 2520 SnpCluster AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=1.8614;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=0;QD=12.35;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:2553,279,0 chrXV 460584 . T A 2635 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=216;Dels=0.00;FS=9.277;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;MQRankSum=-2.724;QD=12.20;ReadPosRankSum=2.855;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:3,213:216:99:2668,282,0 chrXV 460602 . A T 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=234;Dels=0.00;FS=3.017;HaplotypeScore=8.5177;MLEAC=2;MLEAF=1.00;MQ=38.69;MQ0=0;MQRankSum=-1.075;QD=14.88;ReadPosRankSum=2.387;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:2,232:234:99:3481,363,0 chrXV 460848 . T A 4357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.143;DP=192;Dels=0.00;FS=7.314;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.416;QD=22.69;ReadPosRankSum=2.424;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4357,451,0 chrXV 461014 . G A 4165.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.9400;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.08;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4165,433,0 chrXV 461164 . G T 2817 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.01;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2850,294,0 chrXV 461250 . C T 2350 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.04;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2383,246,0 chrXV 461434 . A G 2201 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=25.89;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2234,237,0 chrXV 461473 . C T 2354 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=22.21;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2387,252,0 chrXV 461518 . T G 3188 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.7018;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=25.10;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3221,339,0 chrXV 461644 . T C 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.651;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=0;MQRankSum=-0.781;QD=18.73;ReadPosRankSum=1.698;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1943,204,0 chrXV 461659 . T C 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=3.338;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=40.82;MQ0=0;MQRankSum=-0.976;QD=16.28;ReadPosRankSum=1.669;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:1840,195,0 chrXV 461660 . T C 1773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=3.416;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;MQRankSum=-0.742;QD=15.83;ReadPosRankSum=1.639;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1806,198,0 chrXV 461683 . G A 2361 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=16.40;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2394,252,0 chrXV 461696 . G C 2376 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=16.73;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2409,255,0 chrXV 461870 . C A 5634.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.2745;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=25.61;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5634,586,0 chrXV 462083 . T C 3210.99 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.9105;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=18.45;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3244,363,0 chrXV 462088 . C A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.7432;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=18.70;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3385,354,0 chrXV 462566 . A C 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;MQRankSum=-0.261;QD=20.85;ReadPosRankSum=1.676;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3878,432,0 chrXV 462586 . G A 3362.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=22.56;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3362,351,0 chrXV 462625 . G A 2244 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=20.22;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2277,246,0 chrXV 462628 . C T 2137 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=20.55;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2170,228,0 chrXV 462683 . T A 1064 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=19.00;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1097,117,0 chrXV 462964 . C T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=24.28;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3424,352,0 chrXV 463240 . T C 2438 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.57;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2471,264,0 chrXV 463343 . T A 2081 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.07;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2114,216,0 chrXV 463455 . T A 1227 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=21.53;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1260,129,0 chrXV 463462 . G A 1047 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.04;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1080,114,0 chrXV 463640 . T A 2465 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=20.89;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2498,258,0 chrXV 463641 . G A 2440 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=20.68;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2473,258,0 chrXV 463642 . G A 2415 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=20.47;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2448,255,0 chrXV 463787 . A C 3112 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.72;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3145,333,0 chrXV 463865 . G A 3067 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=23.78;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3100,321,0 chrXV 463933 . G T 2735 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=24.20;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2768,291,0 chrXV 464113 . C T 2226 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.43;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2259,240,0 chrXV 464158 . C G 2109 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=23.18;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2142,225,0 chrXV 464215 . A C 1249 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.25;MQ0=0;QD=20.48;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1282,141,0 chrXV 464237 . T C 941 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.800;DP=52;Dels=0.00;FS=5.699;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=36.31;MQ0=0;MQRankSum=0.067;QD=18.10;ReadPosRankSum=-0.400;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:87:974,87,0 chrXV 464238 . A G 1031 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;QD=19.45;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1064,114,0 chrXV 464244 . G T 1146 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;QD=18.79;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1179,126,0 chrXV 464324 . G A 2081 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=25.07;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2114,219,0 chrXV 464562 . G A 1095 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=9.8999;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=16.85;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1128,123,0 chrXV 464863 . C T 3643.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.35;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3643,376,0 chrXV 465062 . A G 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=4.280;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.537;QD=24.13;ReadPosRankSum=1.708;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3426,366,0 chrXV 465127 . T C 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=144;Dels=0.00;FS=2.613;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-0.060;QD=24.24;ReadPosRankSum=2.415;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3491,381,0 chrXV 465226 . C A 5429.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.7432;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5429,562,0 chrXV 465313 . T C 3968.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=20.24;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3968,418,0 chrXV 465319 . G A 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.2854;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-1.409;QD=19.98;ReadPosRankSum=-1.237;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:1,181:187:99:3736,385,0 chrXV 465398 . G A 3984.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.44;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3984,417,0 chrXV 465655 . G A 4255.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.1019;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.16;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4255,453,0 chrXV 466112 . A G 2947 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.01;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2980,318,0 chrXV 466157 . A G 3320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.030;QD=23.22;ReadPosRankSum=1.684;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3320,354,0 chrXV 466340 . A G 2727 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.92;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2760,294,0 chrXV 466668 . C G 3831.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3831,405,0 chrXV 466809 . T A 4636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=185;Dels=0.00;FS=2.662;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.750;QD=25.06;ReadPosRankSum=2.423;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4636,478,0 chrXV 467065 . C T 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=4.747;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.768;QD=23.61;ReadPosRankSum=-1.555;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:4202,436,0 chrXV 467149 . T A 4692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.1713;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=1.538;QD=23.94;ReadPosRankSum=1.679;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4692,481,0 chrXV 467239 . G A 3790.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.2526;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.69;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3790,394,0 chrXV 467407 . A G 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=227;Dels=0.00;FS=3.167;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=-0.690;QD=20.50;ReadPosRankSum=1.640;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:2,225:227:99:4653,495,0 chrXV 467410 . C G 4511.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.3499;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=20.05;SB=-2.882e+03 GT:AD:DP:GQ:PL 1/1:1,222:225:99:4511,492,0 chrXV 467624 . T C 5779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.780;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=17.2443;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=1.506;QD=23.68;ReadPosRankSum=2.135;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:2,240:244:99:5779,613,0 chrXV 467703 . A G 4467.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=24.28;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4467,477,0 chrXV 467752 . A T 4382.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.90;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4382,466,0 chrXV 467878 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=9.3517;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=21.53;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3133,330,0 chrXV 467889 . G C 2862 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=19.87;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2895,321,0 chrXV 467983 . G A 6030.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.01;FS=0.000;HaplotypeScore=35.5617;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=24.51;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:6030,619,0 chrXV 468018 . C T 5331.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=16.1240;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.23;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5331,556,0 chrXV 468109 . C T 3723.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=17.08;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:3723,396,0 chrXV 468121 . A G 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=3.754;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.59;MQ0=0;MQRankSum=-1.486;QD=13.68;ReadPosRankSum=1.662;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:2727,300,0 chrXV 468133 . A G 2416 SnpCluster AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;QD=12.26;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:2449,267,0 chrXV 468134 . T C 2428 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=200;Dels=0.00;FS=5.834;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;MQRankSum=-2.684;QD=12.14;ReadPosRankSum=2.955;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:2461,276,0 chrXV 468143 . A G 2603 SnpCluster AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.13;MQ0=0;QD=12.11;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:2636,294,0 chrXV 468169 . G A 2743 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=11.93;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:2776,300,0 chrXV 468172 . G C 2722 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=3.8015;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=11.49;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,233:237:99:2755,306,0 chrXV 468284 . G A 5198.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.90;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5198,556,0 chrXV 468336 . A G 4304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.176;DP=203;Dels=0.00;FS=8.179;HaplotypeScore=10.8129;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;MQRankSum=-0.400;QD=21.20;ReadPosRankSum=3.400;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:4,199:203:99:4304,474,0 chrXV 468355 . G C 3876.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;QD=20.84;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3876,435,0 chrXV 468364 . T C 4097.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;QD=20.80;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4097,459,0 chrXV 468391 . G A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;QD=20.80;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3889,414,0 chrXV 468511 . A G 4326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=178;Dels=0.00;FS=3.021;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.173;QD=24.30;ReadPosRankSum=2.422;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4326,457,0 chrXV 468561 . A G 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=1.322;QD=23.44;ReadPosRankSum=1.706;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3198,333,0 chrXV 468674 . T C 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.516;QD=23.91;ReadPosRankSum=1.710;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3826,411,0 chrXV 468739 . C T 3496.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.28;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3496,375,0 chrXV 469093 . C T 3165 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.10;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3198,330,0 chrXV 469469 . T C 3866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.458;QD=25.27;ReadPosRankSum=2.417;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3866,408,0 chrXV 469545 . C T 3115 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.42;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3148,325,0 chrXV 469548 . G A 3135 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.22;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3168,327,0 chrXV 469769 . T C 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=4.055;HaplotypeScore=10.7412;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.084;QD=23.16;ReadPosRankSum=1.684;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3381,372,0 chrXV 469816 . G C 3277.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.41;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3277,360,0 chrXV 469994 . T C 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=120;Dels=0.00;FS=6.131;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-0.924;QD=19.92;ReadPosRankSum=2.941;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:3,116:120:99:2424,255,0 chrXV 470004 . C T 2431 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.09;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2464,258,0 chrXV 470630 . C T 3326.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3326,351,0 chrXV 470845 . G A 3867.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.0071;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.61;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3867,414,0 chrXV 470892 . T C 4130.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.7167;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.57;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4130,441,0 chrXV 471030 . T G 3208 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.91;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3241,357,0 chrXV 471091 . A G 3290.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3290,369,0 chrXV 471228 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.05;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3273,351,0 chrXV 471315 . G T 3533.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.40;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3533,367,0 chrXV 471366 . T C 3412.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.20;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3412,363,0 chrXV 472558 . G A 4012.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.69;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4012,412,0 chrXV 472579 . T A 4306.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.53;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4306,448,0 chrXV 472668 . C T 6977.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=11.0834;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.28;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:6977,748,0 chrXV 472765 . A C 7647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.026;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=15.4297;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.439;QD=23.24;ReadPosRankSum=1.384;SB=-3.058e+03 GT:AD:DP:GQ:PL 1/1:2,325:329:99:7647,838,0 chrXV 473069 . A G 4094.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4094,438,0 chrXV 473696 . G A 7341.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=13.9889;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.91;SB=-4.026e+03 GT:AD:DP:GQ:PL 1/1:0,305:307:99:7341,754,0 chrXV 473826 . A G 5048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;DP=221;Dels=0.00;FS=9.124;HaplotypeScore=15.0629;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.659;QD=22.84;ReadPosRankSum=3.334;SB=-2.910e+03 GT:AD:DP:GQ:PL 1/1:4,217:221:99:5048,532,0 chrXV 474069 . A G 5385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.576;DP=227;Dels=0.00;FS=10.378;HaplotypeScore=12.1382;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.344;QD=23.72;ReadPosRankSum=1.308;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:3,222:227:99:5385,591,0 chrXV 474477 . C A 2326 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=25.56;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2359,240,0 chrXV 474686 . T C 2328 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=18.77;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2361,252,0 chrXV 474687 . T C 2293 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=18.95;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2326,249,0 chrXV 474768 . G T 4080.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.34;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4080,421,0 chrXV 475114 . T C 2262 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.18;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2295,246,0 chrXV 475155 . G T 1257 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.76;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1290,135,0 chrXV 475268 . G T 2051 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.57;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2084,216,0 chrXV 475608 . A G 2983 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.65;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3016,327,0 chrXV 475727 . G A 2991 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.52;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3024,324,0 chrXV 475733 . A C 2877 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.6476;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=19.05;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:2910,315,0 chrXV 475778 . T C 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=158;Dels=0.00;FS=2.882;HaplotypeScore=5.5504;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.677;QD=20.85;ReadPosRankSum=2.325;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3294,357,0 chrXV 475809 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.153;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.749;QD=21.35;ReadPosRankSum=1.665;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3310,348,0 chrXV 475816 . C T 3391.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.16;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3391,360,0 chrXV 475934 . A G 3474.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.86;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3474,369,0 chrXV 476009 . G A 2672 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.9104;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=19.94;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2705,285,0 chrXV 476169 . G A 3272.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=14.4795;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.37;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3272,348,0 chrXV 476205 . G A 3709.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.7949;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=24.89;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3709,391,0 chrXV 476276 . A G 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=149;Dels=0.00;FS=3.016;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.443;QD=22.97;ReadPosRankSum=2.367;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3422,378,0 chrXV 476321 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=13.3621;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.14;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3283,334,0 chrXV 476397 . A G 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=120;Dels=0.00;FS=2.576;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.924;QD=21.53;ReadPosRankSum=2.907;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:3,116:120:99:2617,279,0 chrXV 476414 . G C 2414 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=19.79;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2447,267,0 chrXV 477077 . T C 1711 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1744,192,0 chrXV 477610 . A G 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=3.401;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;MQRankSum=0.356;QD=19.36;ReadPosRankSum=1.709;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2957,333,0 chrXV 477611 . G A 2953 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=19.82;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2986,333,0 chrXV 477629 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=22.56;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3497,361,0 chrXV 477659 . A G 2662 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.48;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2695,285,0 chrXV 477680 . A G 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=127;Dels=0.00;FS=2.984;HaplotypeScore=5.6789;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=-1.733;QD=18.49;ReadPosRankSum=2.411;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2381,261,0 chrXV 477707 . T C 2191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=3.171;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.126;QD=19.74;ReadPosRankSum=1.701;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2224,243,0 chrXV 477773 . A G 2761 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.40;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2794,309,0 chrXV 478004 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3450,363,0 chrXV 478679 . A G 7099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=20.7386;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.506;QD=21.91;ReadPosRankSum=1.721;SB=-3.252e+03 GT:AD:DP:GQ:PL 1/1:1,321:324:99:7099,757,0 chrXV 479060 . C T 3191 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.59;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3224,348,0 chrXV 479299 . T C 1259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.0977;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=0.689;QD=19.98;ReadPosRankSum=2.887;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:3,59:63:99:1292,141,0 chrXV 479529 . G C 5990.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.96;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5990,646,0 chrXV 479604 . A G 3705.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=28.9096;MLEAC=2;MLEAF=1.00;MQ=47.16;MQ0=0;QD=12.91;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,283:287:99:3705,423,0 chrXV 479709 . G A 9663.01 filter AC=2;AF=1.00;AN=2;DP=455;Dels=0.00;FS=0.000;HaplotypeScore=33.2426;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.24;SB=-4.553e+03 GT:AD:DP:GQ:PL 1/1:0,452:455:99:9663,1024,0 chrXV 480090 . C T 8943.01 filter AC=2;AF=1.00;AN=2;DP=426;Dels=0.00;FS=0.000;HaplotypeScore=48.4068;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.99;SB=-4.243e+03 GT:AD:DP:GQ:PL 1/1:0,421:426:99:8943,958,0 chrXV 480144 . G A 9979.01 filter AC=2;AF=1.00;AN=2;DP=436;Dels=0.00;FS=0.000;HaplotypeScore=21.2852;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.89;SB=-5.896e+03 GT:AD:DP:GQ:PL 1/1:0,435:436:99:9979,1036,0 chrXV 480186 . T C 6774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=338;Dels=0.00;FS=12.095;HaplotypeScore=19.8365;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-1.159;QD=20.04;ReadPosRankSum=2.901;SB=-3.569e+03 GT:AD:DP:GQ:PL 1/1:3,333:338:99:6774,715,0 chrXV 480336 . A G 6542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;DP=319;Dels=0.00;FS=8.377;HaplotypeScore=21.4244;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.749;QD=20.51;ReadPosRankSum=3.418;SB=-3.614e+03 GT:AD:DP:GQ:PL 1/1:4,314:319:99:6542,700,0 chrXV 480576 . C A 9070.01 filter AC=2;AF=1.00;AN=2;DP=388;Dels=0.00;FS=0.000;HaplotypeScore=26.2232;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.38;SB=-3.817e+03 GT:AD:DP:GQ:PL 1/1:0,386:388:99:9070,970,0 chrXV 480906 . G A 8112.01 PASS AC=2;AF=1.00;AN=2;DP=357;Dels=0.00;FS=0.000;HaplotypeScore=17.7398;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-3.200e+03 GT:AD:DP:GQ:PL 1/1:0,357:357:99:8112,871,0 chrXV 480946 . C T 6978.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=19.2915;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.21;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:0,328:329:99:6978,736,0 chrXV 481004 . G C 6072.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=19.6561;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.32;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,270:272:99:6072,646,0 chrXV 481165 . A G 3652.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=16.0746;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=17.81;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3652,405,0 chrXV 481308 . C T 6314.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.66;SB=-3.194e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:6314,664,0 chrXV 481447 . T C 6611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=295;Dels=0.00;FS=2.973;HaplotypeScore=23.6372;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.878;QD=22.41;ReadPosRankSum=2.424;SB=-3.483e+03 GT:AD:DP:GQ:PL 1/1:2,290:295:99:6611,715,0 chrXV 481588 . C T 3191 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=20.4038;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=18.99;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3224,345,0 chrXV 481731 . C T 3088 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.75;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3121,330,0 chrXV 481843 . T C 3941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.331;QD=24.03;ReadPosRankSum=1.690;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3941,420,0 chrXV 481860 . T A 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.7721;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.152;QD=23.49;ReadPosRankSum=1.692;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4041,426,0 chrXV 482267 . C T 3783.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.35;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3783,391,0 chrXV 482608 . G A 5719.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.34;SB=-3.009e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:5719,598,0 chrXV 483253 . T C 4245.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.0266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4245,453,0 chrXV 483363 . A G 4832.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.57;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4832,525,0 chrXV 483751 . T C 4955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=217;Dels=0.00;FS=6.330;HaplotypeScore=17.4263;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.257;QD=22.83;ReadPosRankSum=2.358;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:2,213:217:99:4955,523,0 chrXV 483960 . T A 4817.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.05;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4817,502,0 chrXV 483971 . C T 4564.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.93;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4564,475,0 chrXV 484011 . T C 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.292;DP=197;Dels=0.00;FS=8.387;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.518;QD=22.14;ReadPosRankSum=3.398;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:4,193:197:99:4362,463,0 chrXV 484332 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.61;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3266,357,0 chrXV 484571 . G C 3835.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.29;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3835,403,0 chrXV 484572 . T C 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.401;QD=19.52;ReadPosRankSum=1.714;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3708,405,0 chrXV 484596 . G T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.7165;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=18.37;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3564,375,0 chrXV 484728 . T C 3697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=156;Dels=0.00;FS=7.398;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.136;QD=23.70;ReadPosRankSum=2.418;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3697,387,0 chrXV 485031 . A G 5025.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.9046;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.05;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5025,555,0 chrXV 485252 . A G 4549.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.8774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.75;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4549,484,0 chrXV 485322 . C T 4470.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=24.29;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4470,469,0 chrXV 485571 . C T 4392.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.9680;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.36;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4392,451,0 chrXV 485588 . G A 4369.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=24.54;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4369,442,0 chrXV 485781 . G A 5247.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.60;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:5247,544,0 chrXV 485898 . A G 4840.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=24.57;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4840,531,0 chrXV 486135 . A G 3185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=0.431;QD=18.41;ReadPosRankSum=1.672;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3218,345,0 chrXV 486141 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.6545;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=18.01;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3094,336,0 chrXV 486180 . C T 3953.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=20.81;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3953,406,0 chrXV 486303 . T C 3859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.277;DP=163;Dels=0.00;FS=9.193;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=0.971;QD=23.67;ReadPosRankSum=3.384;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:4,159:163:99:3859,417,0 chrXV 486327 . T C 3640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=3.367;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.251;QD=23.79;ReadPosRankSum=1.687;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3640,387,0 chrXV 486494 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.0838;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.37;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3547,370,0 chrXV 486511 . G C 3728.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.55;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3728,399,0 chrXV 487275 . C T 1665 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.50;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1698,174,0 chrXV 487362 . T A 1240 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1273,135,0 chrXV 487374 . C T 1173 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=19.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1206,123,0 chrXV 487418 . T C 970 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;QD=16.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1003,105,0 chrXV 487679 . A G 2594 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=18.40;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2627,288,0 chrXV 487689 . T C 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=143;Dels=0.00;FS=5.247;HaplotypeScore=8.9697;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=0.426;QD=17.43;ReadPosRankSum=2.951;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:2525,279,0 chrXV 487727 . C T 3427.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.8544;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.77;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3427,360,0 chrXV 487809 . A G 3815.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.3779;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.55;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3815,405,0 chrXV 487952 . C T 4498.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=24.31;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4498,477,0 chrXV 488270 . T C 4049.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.2426;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=21.20;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4049,427,0 chrXV 488280 . T C 3845.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=20.13;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3845,406,0 chrXV 488285 . A G 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;MQRankSum=-1.637;QD=19.34;ReadPosRankSum=1.713;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3520,375,0 chrXV 488300 . A G 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=162;Dels=0.00;FS=2.697;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;MQRankSum=1.479;QD=17.01;ReadPosRankSum=2.359;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:2789,294,0 chrXV 488333 . T C 3112 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=17.78;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3145,333,0 chrXV 488366 . A G 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-0.555;QD=18.42;ReadPosRankSum=2.921;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3073,327,0 chrXV 488381 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=18.76;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3110,336,0 chrXV 488435 . C T 3160 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=15.1795;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.50;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3193,333,0 chrXV 488538 . A G 3692.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=24.95;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3692,399,0 chrXV 488780 . A G 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=176;Dels=0.00;FS=2.668;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.249;QD=22.67;ReadPosRankSum=2.380;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3990,435,0 chrXV 489305 . G A 4747.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.82;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4747,499,0 chrXV 489366 . T C 4781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.781;QD=24.52;ReadPosRankSum=1.696;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4781,508,0 chrXV 489440 . G A 4374.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.43;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4374,468,0 chrXV 489491 . C A 4571.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.0834;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.68;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4571,475,0 chrXV 489625 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.5407;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.59;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2934,303,0 chrXV 489738 . A G 1767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-0.321;QD=21.81;ReadPosRankSum=1.689;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1800,192,0 chrXV 489752 . A C 1595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;MQRankSum=0.182;QD=20.71;ReadPosRankSum=1.595;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1628,174,0 chrXV 489831 . C A 824 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.68;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:90:857,90,0 chrXV 489885 . T C 1149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.389;QD=23.45;ReadPosRankSum=1.662;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1182,126,0 chrXV 489971 . T C 765 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=22.2297;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=26.38;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:81:798,81,0 chrXV 490253 . T C 3935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.523;QD=26.41;ReadPosRankSum=1.709;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3935,420,0 chrXV 490304 . C T 3157 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=25.26;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3190,336,0 chrXV 490328 . G A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.89;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3484,363,0 chrXV 490397 . T C 4940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=203;Dels=0.00;FS=2.548;HaplotypeScore=11.5374;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.513;QD=24.34;ReadPosRankSum=2.965;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:3,199:203:99:4940,523,0 chrXV 490463 . G A 5933.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.82;SB=-3.460e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5933,613,0 chrXV 490882 . T C 2349 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.61;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2382,252,0 chrXV 490896 . T C 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=3.729;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.382;QD=21.27;ReadPosRankSum=1.703;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2543,273,0 chrXV 490941 . C T 2337 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.64;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2370,246,0 chrXV 491077 . A G 2614 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.97;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2647,282,0 chrXV 491183 . G T 2956 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=20.67;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2989,312,0 chrXV 491189 . A G 2663 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=4.260;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=-1.325;QD=19.58;ReadPosRankSum=1.681;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2696,297,0 chrXV 491190 . A G 2775 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=20.56;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2808,297,0 chrXV 491204 . A G 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.889;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;MQRankSum=1.220;QD=18.49;ReadPosRankSum=1.708;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2659,291,0 chrXV 491429 . T C 2878 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.3761;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=18.33;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2911,321,0 chrXV 491450 . A G 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=148;Dels=0.00;FS=3.039;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-0.075;QD=18.32;ReadPosRankSum=2.416;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2744,306,0 chrXV 491483 . C T 2701 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=18.63;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2734,282,0 chrXV 491573 . C G 2889 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.0370;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.89;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2922,327,0 chrXV 491585 . C T 2972 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.9364;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.38;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3005,318,0 chrXV 491651 . T G 2285 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.77;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2318,249,0 chrXV 491788 . T C 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=0.197;QD=22.60;ReadPosRankSum=2.420;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3797,402,0 chrXV 491810 . T C 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.5787;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=1.534;QD=21.72;ReadPosRankSum=2.391;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3671,399,0 chrXV 491843 . T A 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.098;QD=22.21;ReadPosRankSum=2.359;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3621,376,0 chrXV 492116 . T C 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=176;Dels=0.00;FS=3.354;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.962;QD=20.34;ReadPosRankSum=1.671;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,170:176:99:3580,396,0 chrXV 492191 . C G 3969.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.05;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3969,418,0 chrXV 492545 . G A 5104.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=19.7058;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.81;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5104,538,0 chrXV 492719 . G A 3937.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8281;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.30;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3937,417,0 chrXV 492749 . G T 3660.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.40;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3660,384,0 chrXV 492846 . A G 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=173;Dels=0.00;FS=3.035;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.646;QD=22.66;ReadPosRankSum=2.421;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3920,420,0 chrXV 492851 . G A 3688.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.57;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3688,393,0 chrXV 493331 . A G 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.076;DP=182;Dels=0.00;FS=13.602;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.945;QD=20.82;ReadPosRankSum=3.402;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:4,178:182:99:3789,411,0 chrXV 493377 . T G 3942.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.90;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3942,417,0 chrXV 493684 . G A 4003.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4003,417,0 chrXV 493846 . C T 5639.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.5460;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.62;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5639,598,0 chrXV 493975 . T C 4567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.957;DP=204;Dels=0.00;FS=2.065;HaplotypeScore=17.0977;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.464;QD=22.39;ReadPosRankSum=1.749;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:4,198:204:99:4567,448,0 chrXV 494571 . A G 4972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=230;Dels=0.00;FS=3.364;HaplotypeScore=7.6407;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-1.084;QD=21.62;ReadPosRankSum=1.702;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:4972,540,0 chrXV 494590 . C T 4242.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.9432;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.01;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4242,448,0 chrXV 494669 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.808;QD=21.19;ReadPosRankSum=1.690;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3517,375,0 chrXV 494728 . G A 4364.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.6894;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.38;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4364,445,0 chrXV 495045 . C T 4695.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.94;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4695,507,0 chrXV 495525 . A C 7255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=303;Dels=0.00;FS=2.972;HaplotypeScore=15.8671;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.383;QD=23.94;ReadPosRankSum=2.417;SB=-3.556e+03 GT:AD:DP:GQ:PL 1/1:2,297:303:99:7255,769,0 chrXV 495702 . A G 4389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=203;Dels=0.00;FS=2.846;HaplotypeScore=18.2737;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.784;QD=21.62;ReadPosRankSum=1.988;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:4389,480,0 chrXV 495861 . C T 6440.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.30;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:1,264:265:99:6440,673,0 chrXV 495905 . T C 6347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.146;QD=22.75;ReadPosRankSum=1.632;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:1,277:279:99:6347,670,0 chrXV 496393 . C T 2733 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2766,285,0 chrXV 496482 . G A 3295.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.1214;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=24.41;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,131:135:99:3295,348,0 chrXV 496695 . G A 5662.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.1923;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=25.16;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:5662,592,0 chrXV 496731 . A G 5326.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.96;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5326,565,0 chrXV 496734 . G A 5051.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.96;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5051,529,0 chrXV 496782 . C T 4064.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.50;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4064,435,0 chrXV 497083 . T C 2270 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.21;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2303,246,0 chrXV 497271 . A G 408 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-0.473;QD=18.55;ReadPosRankSum=1.576;SB=-6.653e-03 GT:AD:DP:GQ:PL 1/1:1,21:22:48:441,48,0 chrXV 497288 . G A 489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=4.6000;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=1.156;QD=19.56;ReadPosRankSum=1.589;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:54:522,54,0 chrXV 497301 . C A 549 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.87;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:60:582,60,0 chrXV 497400 . T C 217.01 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=15.50;SB=-1.429e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:27:250,27,0 chrXV 497401 . C T 217.01 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=15.50;SB=-1.399e+02 GT:AD:DP:GQ:PL 1/1:0,12:14:27:250,27,0 chrXV 497758 . A G 3922.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3922,412,0 chrXV 497904 . G A 3587.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.14;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3587,370,0 chrXV 498007 . A G 4694.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.6903;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.20;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4694,496,0 chrXV 498202 . A G 5837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=255;Dels=0.00;FS=9.240;HaplotypeScore=17.9494;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.480;QD=22.89;ReadPosRankSum=2.925;SB=-3.246e+03 GT:AD:DP:GQ:PL 1/1:3,250:255:99:5837,619,0 chrXV 498478 . T C 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=4.061;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-1.681;QD=21.85;ReadPosRankSum=1.706;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3005,315,0 chrXV 498482 . T C 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.00;FS=8.379;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-1.895;QD=21.98;ReadPosRankSum=2.339;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2978,312,0 chrXV 498558 . C T 2776 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.03;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2809,294,0 chrXV 498787 . T C 3525.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=24.31;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3525,387,0 chrXV 498862 . C A 4405.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.1363;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=24.75;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4405,468,0 chrXV 498904 . T C 4284.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.76;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4284,456,0 chrXV 498994 . C T 3404.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.10;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3404,349,0 chrXV 499054 . G A 4073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=184;Dels=0.00;FS=4.795;HaplotypeScore=9.1834;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.151;QD=22.14;ReadPosRankSum=1.243;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4073,432,0 chrXV 499060 . C T 4139.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.0287;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.62;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4139,444,0 chrXV 499140 . C A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.2746;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.02;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3877,403,0 chrXV 499249 . G A 4011.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=26.56;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4011,409,0 chrXV 499324 . A G 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=101;Dels=0.00;FS=2.968;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.554;QD=21.71;ReadPosRankSum=2.401;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:2,98:101:99:2226,237,0 chrXV 499435 . G A 5011.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.6874;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.18;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:5011,520,0 chrXV 499558 . A C 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=15.6202;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.624;QD=22.75;ReadPosRankSum=-1.570;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3413,369,0 chrXV 499801 . T C 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=143;Dels=0.00;FS=3.198;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.610;QD=21.74;ReadPosRankSum=1.683;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3142,351,0 chrXV 499909 . A G 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;DP=133;Dels=0.00;FS=2.890;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.008;QD=22.95;ReadPosRankSum=2.394;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3085,327,0 chrXV 499981 . G A 3813.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.70;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3813,397,0 chrXV 500068 . T C 4216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=183;Dels=0.01;FS=2.582;HaplotypeScore=14.7514;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.289;QD=23.04;ReadPosRankSum=2.342;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4216,453,0 chrXV 500107 . T C 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.710;DP=170;Dels=0.00;FS=2.574;HaplotypeScore=14.3194;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.450;QD=21.28;ReadPosRankSum=2.805;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:3618,396,0 chrXV 500224 . G A 4868.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.2166;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.07;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4868,525,0 chrXV 500434 . C T 4500.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4500,480,0 chrXV 500575 . G A 3621.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.30;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3621,379,0 chrXV 500665 . G A 2316 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2349,252,0 chrXV 500829 . G A 2822 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.42;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2855,294,0 chrXV 500968 . G A 3181 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3214,333,0 chrXV 501550 . C T 4457.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.71;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4457,460,0 chrXV 501598 . C T 4167.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.37;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4167,433,0 chrXV 501919 . T C 4915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.149;QD=22.04;ReadPosRankSum=2.464;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:3,220:223:99:4915,540,0 chrXV 502258 . T C 4893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=227;Dels=0.00;FS=6.864;HaplotypeScore=25.3469;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.592;QD=21.56;ReadPosRankSum=2.405;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:2,220:227:99:4893,523,0 chrXV 502423 . A T 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=176;Dels=0.00;FS=3.026;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.775;QD=25.24;ReadPosRankSum=2.366;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4443,463,0 chrXV 502474 . G C 4237.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.41;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4237,448,0 chrXV 502484 . A G 3889.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.91;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3889,426,0 chrXV 502590 . G A 4719.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.51;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4719,490,0 chrXV 502621 . A G 5158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=204;Dels=0.00;FS=8.013;HaplotypeScore=7.5529;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.768;QD=25.28;ReadPosRankSum=2.413;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:5158,538,0 chrXV 503533 . G A 3448.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4001;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.28;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3448,369,0 chrXV 503561 . G C 3749.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.19;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3749,408,0 chrXV 503975 . T C 4798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=3.548;HaplotypeScore=8.9978;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.471;QD=23.07;ReadPosRankSum=1.715;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:4798,511,0 chrXV 504206 . A T 3669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.031;QD=22.51;ReadPosRankSum=1.690;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3669,387,0 chrXV 504284 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.68;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3481,369,0 chrXV 504745 . C G 2724 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.02;FS=0.000;HaplotypeScore=33.7170;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.28;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2757,294,0 chrXV 504774 . T C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=7.510;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.386;QD=22.80;ReadPosRankSum=2.396;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3180,330,0 chrXV 504794 . A T 3001 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.07;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3034,318,0 chrXV 504874 . A G 3607.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.86;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3607,387,0 chrXV 504884 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=3.966;HaplotypeScore=6.3347;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=0.156;QD=21.58;ReadPosRankSum=1.711;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3626,387,0 chrXV 504931 . T A 3335.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.53;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3335,348,0 chrXV 505011 . C G 2138 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.61;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2171,228,0 chrXV 505109 . T C 4961.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.6554;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=24.08;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4961,526,0 chrXV 505164 . A T 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=149;Dels=0.00;FS=11.337;HaplotypeScore=18.1447;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;MQRankSum=1.250;QD=23.91;ReadPosRankSum=2.926;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3563,367,0 chrXV 505269 . G A 3077 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.79;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3110,321,0 chrXV 505308 . T G 3362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=156;Dels=0.00;FS=14.742;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=1.032;QD=21.55;ReadPosRankSum=2.955;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3362,363,0 chrXV 505358 . A G 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.5491;MLEAC=2;MLEAF=1.00;MQ=41.23;MQ0=0;MQRankSum=-1.663;QD=14.62;ReadPosRankSum=1.709;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:2241,243,0 chrXV 505372 . A C 1924 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=145;Dels=0.00;FS=7.855;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=0;MQRankSum=-1.738;QD=13.27;ReadPosRankSum=2.382;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:1957,216,0 chrXV 505374 . C T 1965 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.42;MQ0=0;QD=13.84;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1998,210,0 chrXV 505376 . T C 1951 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=145;Dels=0.00;FS=2.912;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=0;MQRankSum=-2.348;QD=13.46;ReadPosRankSum=2.416;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:1984,216,0 chrXV 505381 . A G 2155 SnpCluster AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=37.89;MQ0=0;QD=12.90;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:2188,234,0 chrXV 505483 . G A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.09;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3417,352,0 chrXV 505528 . G A 2927 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=22.87;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2960,306,0 chrXV 505541 . C G 2603 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=20.18;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2636,288,0 chrXV 505980 . T G 4350.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.36;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4350,463,0 chrXV 506101 . C A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.48;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3475,352,0 chrXV 506209 . T C 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=166;Dels=0.00;FS=6.998;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.290;QD=23.23;ReadPosRankSum=2.420;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3857,400,0 chrXV 507053 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=27.17;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3265,345,0 chrXV 507079 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.03;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3261,342,0 chrXV 507156 . T C 2948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=129;Dels=0.00;FS=2.938;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.201;QD=22.85;ReadPosRankSum=2.315;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2981,321,0 chrXV 507805 . T C 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=4.034;HaplotypeScore=7.8264;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.004;QD=25.25;ReadPosRankSum=1.703;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3038,318,0 chrXV 508131 . G A 4519.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.73;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4519,483,0 chrXV 508178 . C T 4517.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=22.6799;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=20.63;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4517,483,0 chrXV 508404 . A C 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.043;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=0.937;QD=20.17;ReadPosRankSum=2.398;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:2958,315,0 chrXV 508412 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.3506;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=20.11;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3110,333,0 chrXV 508557 . T C 6137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.220;DP=253;Dels=0.00;FS=2.380;HaplotypeScore=18.4129;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.010;QD=24.26;ReadPosRankSum=3.358;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:4,249:253:99:6137,669,0 chrXV 508682 . T C 5592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=247;Dels=0.00;FS=2.983;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.378;QD=22.64;ReadPosRankSum=2.389;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:2,243:247:99:5592,595,0 chrXV 508701 . A T 5859.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=10.5469;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.44;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5859,610,0 chrXV 508802 . T C 5872.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=15.5846;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:5872,639,0 chrXV 508929 . T C 4585.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.63;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4585,495,0 chrXV 509207 . T C 4723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.342;DP=195;Dels=0.00;FS=13.022;HaplotypeScore=22.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.280;QD=24.22;ReadPosRankSum=3.415;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:4,189:195:99:4723,505,0 chrXV 509248 . T A 4811.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.06;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4811,516,0 chrXV 509620 . T C 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=191;Dels=0.00;FS=2.939;HaplotypeScore=11.2585;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.821;QD=24.36;ReadPosRankSum=2.424;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4653,487,0 chrXV 509802 . T C 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=152;Dels=0.00;FS=12.468;HaplotypeScore=5.2455;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=0.358;QD=19.99;ReadPosRankSum=2.676;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3071,330,0 chrXV 509804 . C T 3011 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=5.2455;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.94;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3044,327,0 chrXV 509969 . T C 4494.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.2169;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.13;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4494,477,0 chrXV 510299 . C T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.1211;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.71;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3459,358,0 chrXV 510586 . C T 3117 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.59;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3150,327,0 chrXV 510684 . G A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.04;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3526,370,0 chrXV 510696 . G A 3781.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.98;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3781,391,0 chrXV 511142 . G A 4251.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4251,442,0 chrXV 511243 . T A 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=126;Dels=0.00;FS=6.630;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.966;QD=22.98;ReadPosRankSum=2.391;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2929,303,0 chrXV 511379 . T C 3402.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.14;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3402,363,0 chrXV 511443 . T C 3359.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=25.45;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3359,357,0 chrXV 511893 . C T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=25.80;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3328,351,0 chrXV 511995 . A G 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=167;Dels=0.00;FS=3.029;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-1.050;QD=23.13;ReadPosRankSum=2.360;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:2,163:167:99:3863,414,0 chrXV 512025 . C T 3992.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.64;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3992,418,0 chrXV 512238 . A G 6107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=260;Dels=0.00;FS=4.754;HaplotypeScore=10.1580;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.179;QD=23.49;ReadPosRankSum=1.705;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:1,256:260:99:6107,649,0 chrXV 512256 . G T 5869.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=6.7376;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.48;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5869,610,0 chrXV 512566 . G T 4785.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.8114;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.92;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4785,490,0 chrXV 512726 . G A 4289.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.83;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4289,451,0 chrXV 512793 . C T 3811.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.97;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3811,394,0 chrXV 512820 . C T 3059 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.17;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3092,327,0 chrXV 513015 . T C 1792 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.33;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,80:84:99:1825,195,0 chrXV 513219 . A G 1262 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.54;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1295,135,0 chrXV 513337 . A G 4198.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.72;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4198,465,0 chrXV 513607 . A T 3760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.852;QD=20.77;ReadPosRankSum=1.713;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3760,388,0 chrXV 513637 . A T 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.134;DP=187;Dels=0.00;FS=3.031;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.020;QD=21.36;ReadPosRankSum=2.384;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3995,418,0 chrXV 514344 . T C 4160.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.86;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4160,462,0 chrXV 514397 . A C 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=184;Dels=0.00;FS=3.253;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-0.885;QD=20.08;ReadPosRankSum=1.676;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3695,393,0 chrXV 514400 . C T 3895.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.83;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3895,406,0 chrXV 514435 . T G 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.938;DP=197;Dels=0.00;FS=2.843;HaplotypeScore=12.4451;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.132;QD=20.29;ReadPosRankSum=2.361;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:2,193:197:99:3997,429,0 chrXV 514625 . C T 6630.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=12.3604;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=27.06;SB=-3.172e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:6630,682,0 chrXV 514713 . A G 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=213;Dels=0.00;FS=8.091;HaplotypeScore=2.8963;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;MQRankSum=-1.249;QD=21.50;ReadPosRankSum=3.419;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:4,209:213:99:4580,516,0 chrXV 514715 . T C 4479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=206;Dels=0.00;FS=3.948;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;MQRankSum=0.135;QD=21.74;ReadPosRankSum=1.715;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4479,516,0 chrXV 514738 . G C 3642.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=21.30;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3642,396,0 chrXV 514746 . T C 3462.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=21.64;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3462,378,0 chrXV 514832 . G A 3578.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.01;FS=0.000;HaplotypeScore=12.4855;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=19.88;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3578,387,0 chrXV 514882 . T A 2217 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.4138;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=14.30;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2250,240,0 chrXV 514925 . C T 521 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.03;FS=0.000;HaplotypeScore=64.7021;MLEAC=2;MLEAF=1.00;MQ=26.55;MQ0=0;QD=6.68;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,68:76:66:554,66,0 chrXV 514953 . T C 298 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=0;QD=6.62;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:36:331,36,0 chrXV 514954 . T C 282 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=0;QD=6.27;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:36:315,36,0 chrXV 514969 . T C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=0.48;SB=-3.568e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:6:55,6,0 chrXV 514974 . A G 636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.11;MQ0=0;MQRankSum=1.965;QD=11.36;ReadPosRankSum=2.362;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:72:669,72,0 chrXV 515034 . G A 1402 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=17.10;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1435,150,0 chrXV 515073 . T A 1435 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=0;QD=13.93;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1468,153,0 chrXV 515077 . A C 1460 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=97;Dels=0.00;FS=5.888;HaplotypeScore=70.2196;MLEAC=2;MLEAF=1.00;MQ=32.51;MQ0=0;MQRankSum=-1.625;QD=15.05;ReadPosRankSum=1.696;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1493,159,0 chrXV 515081 . C T 1282 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=84.5754;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=13.93;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1315,138,0 chrXV 515090 . G C 1180 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=80.5822;MLEAC=2;MLEAF=1.00;MQ=29.12;MQ0=0;QD=12.42;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1213,132,0 chrXV 515094 . T C 1192 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.775;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=77.9748;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=0;MQRankSum=-0.716;QD=11.57;ReadPosRankSum=2.932;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:3,100:103:99:1225,132,0 chrXV 515098 . A C 1344 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=0;QD=12.68;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1377,144,0 chrXV 515105 . A G 1402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=10.531;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;MQRankSum=0.935;QD=12.41;ReadPosRankSum=1.701;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1435,153,0 chrXV 515116 . T C 1544 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.09;MQ0=0;QD=12.45;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1577,171,0 chrXV 515119 . G A 1575 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;QD=12.91;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1608,171,0 chrXV 515138 . G A 1337 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;QD=11.24;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1370,147,0 chrXV 515159 . C T 1714 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.02;MQ0=0;QD=13.29;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1747,180,0 chrXV 515214 . G A 2373 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=17.58;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2406,249,0 chrXV 515252 . A C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=146;Dels=0.00;FS=11.985;HaplotypeScore=9.4274;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;MQRankSum=1.259;QD=22.14;ReadPosRankSum=2.951;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:3,141:146:99:3267,351,0 chrXV 515279 . G A 4112.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=23.77;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4112,427,0 chrXV 515324 . A G 4721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=209;Dels=0.00;FS=5.812;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;MQRankSum=0.371;QD=22.59;ReadPosRankSum=2.927;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:3,203:209:99:4721,513,0 chrXV 515378 . T C 4939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=216;Dels=0.00;FS=3.412;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;MQRankSum=-0.943;QD=22.87;ReadPosRankSum=1.716;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4939,523,0 chrXV 515441 . T C 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=3.277;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;MQRankSum=0.577;QD=22.85;ReadPosRankSum=1.711;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3861,426,0 chrXV 515471 . A G 4144.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=24.09;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4144,438,0 chrXV 515506 . T C 4810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=199;Dels=0.00;FS=6.589;HaplotypeScore=12.8748;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=0.887;QD=24.17;ReadPosRankSum=1.643;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4810,492,0 chrXV 515571 . G A 5479.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=25.25;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:5479,571,0 chrXV 515672 . G A 3021 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9413;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;QD=21.43;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3054,321,0 chrXV 515705 . G C 1941 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=35.78;MQ0=0;QD=15.28;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1974,231,0 chrXV 515720 . C T 2175 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=13.68;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:2208,246,0 chrXV 515726 . C T 2181 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=37.74;MQ0=0;QD=13.89;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2214,246,0 chrXV 515728 . A G 2099 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.5101;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;MQRankSum=-0.736;QD=13.12;ReadPosRankSum=1.689;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2132,243,0 chrXV 515780 . T C 4028.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=5.4101;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=18.91;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4028,429,0 chrXV 515805 . A T 4590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.2388;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=-0.097;QD=21.35;ReadPosRankSum=0.565;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:4590,475,0 chrXV 515884 . T C 1977 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.44;MQ0=0;QD=15.45;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2010,228,0 chrXV 515885 . C T 2049 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=16.13;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2082,231,0 chrXV 515918 . C T 1641 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=34.13;MQ0=0;QD=11.89;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1674,195,0 chrXV 515927 . G A 1583 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.03;MQ0=0;QD=11.81;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1616,186,0 chrXV 515935 . T C 1473 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.37;MQ0=0;QD=11.08;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1506,177,0 chrXV 515948 . T C 1585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.00;FS=3.042;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=0;MQRankSum=-1.294;QD=11.83;ReadPosRankSum=2.395;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:1618,189,0 chrXV 515981 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=42.59;MQ0=0;QD=19.05;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2967,315,0 chrXV 516055 . G A 2985 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.1969;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=20.59;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3018,336,0 chrXV 516062 . T C 2504 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;QD=19.41;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2537,291,0 chrXV 516077 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=0;QD=18.32;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2232,255,0 chrXV 516084 . T G 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.153;DP=121;Dels=0.00;FS=9.251;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=36.95;MQ0=0;MQRankSum=-1.703;QD=16.82;ReadPosRankSum=3.269;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:4,117:121:99:2068,243,0 chrXV 516140 . A G 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.623;DP=142;Dels=0.00;FS=4.128;HaplotypeScore=10.8321;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;MQRankSum=-0.963;QD=16.58;ReadPosRankSum=3.785;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:5,137:142:99:2388,264,0 chrXV 516181 . C T 2634 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.5917;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=18.04;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2667,279,0 chrXV 516212 . G A 2120 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=38.04;MQ0=0;QD=13.95;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2153,240,0 chrXV 516229 . T A 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=155;Dels=0.00;FS=2.652;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=0;MQRankSum=-0.595;QD=13.82;ReadPosRankSum=2.275;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:2175,243,0 chrXV 516244 . A G 1900 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=11.80;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:1933,222,0 chrXV 516246 . C T 2024 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.76;MQ0=0;QD=12.73;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2057,228,0 chrXV 516270 . C T 1612 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.99;MQ0=0;QD=11.43;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1645,180,0 chrXV 516275 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.72;MQ0=0;QD=12.34;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1687,183,0 chrXV 516336 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=101.4834;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;QD=17.25;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2017,207,0 chrXV 516351 . C T 2305 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=17.73;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2338,240,0 chrXV 516412 . T C 4820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=209;Dels=0.00;FS=3.023;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;MQRankSum=1.062;QD=23.06;ReadPosRankSum=2.390;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:2,205:209:99:4820,522,0 chrXV 516539 . A G 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=111;Dels=0.00;FS=3.392;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;MQRankSum=1.635;QD=24.14;ReadPosRankSum=1.700;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,106:111:99:2712,288,0 chrXV 516665 . C T 3856.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=23.23;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3856,426,0 chrXV 516689 . G A 3490.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=23.11;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3490,358,0 chrXV 516707 . T C 2892 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=21.42;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2925,309,0 chrXV 516828 . G A 2499 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;QD=22.12;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2532,270,0 chrXV 516832 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.16;MQ0=0;QD=22.45;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2345,243,0 chrXV 516857 . C T 1558 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.39;MQ0=0;QD=20.23;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1591,162,0 chrXV 516859 . C G 1452 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.90;MQ0=0;QD=19.36;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1485,162,0 chrXV 516864 . C T 1649 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.77;MQ0=0;QD=18.32;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1682,183,0 chrXV 516871 . T C 1568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=8.777;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;MQRankSum=-1.482;QD=18.89;ReadPosRankSum=1.690;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1601,171,0 chrXV 516893 . G A 1781 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;QD=20.71;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1814,192,0 chrXV 516896 . G A 1785 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;QD=19.83;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1818,192,0 chrXV 517028 . A G 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=3.716;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.404;QD=22.90;ReadPosRankSum=1.703;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2781,300,0 chrXV 517060 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=19.35;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1426,150,0 chrXV 517074 . T C 532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;MQRankSum=0.214;QD=9.85;ReadPosRankSum=2.355;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:2,50:54:63:565,63,0 chrXV 517088 . C G 607 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;QD=10.65;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:72:640,72,0 chrXV 517101 . T C 615 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=10.98;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:69:648,69,0 chrXV 517102 . T C 617 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=11.02;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:72:650,72,0 chrXV 517115 . C G 875 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.48;MQ0=0;QD=12.32;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:908,99,0 chrXV 517134 . C T 1472 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=0;QD=15.83;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1505,159,0 chrXV 517167 . G T 2746 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=20.7300;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=21.97;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2779,288,0 chrXV 517216 . T C 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=141;Dels=0.00;FS=6.974;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.623;QD=22.45;ReadPosRankSum=2.415;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3199,345,0 chrXV 517243 . A G 2815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=131;Dels=0.00;FS=12.193;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=-0.777;QD=21.49;ReadPosRankSum=2.947;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2848,312,0 chrXV 517285 . C T 2217 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=41.98;MQ0=0;QD=18.79;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2250,267,0 chrXV 517286 . T C 2064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=41.98;MQ0=0;MQRankSum=-0.851;QD=17.49;ReadPosRankSum=1.703;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2097,252,0 chrXV 517301 . T C 2160 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;QD=18.46;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2193,249,0 chrXV 517410 . C G 2530 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=23.00;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2563,270,0 chrXV 517420 . C T 2456 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=24.08;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2489,255,0 chrXV 517528 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=18.79;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1856,201,0 chrXV 517533 . C A 1766 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=18.99;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1799,198,0 chrXV 517614 . T G 1978 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.22;MQ0=0;QD=17.05;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2011,213,0 chrXV 517619 . G A 1892 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.50;MQ0=0;QD=16.17;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1925,204,0 chrXV 517635 . C T 1830 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=15.12;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1863,195,0 chrXV 517639 . G A 1795 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.45;MQ0=0;QD=14.59;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1828,189,0 chrXV 517647 . C T 1355 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.39;MQ0=0;QD=11.89;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1388,147,0 chrXV 517648 . G A 1349 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.68;MQ0=0;QD=12.04;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1382,150,0 chrXV 517707 . A C 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=145;Dels=0.00;FS=7.270;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=1.347;QD=18.85;ReadPosRankSum=1.708;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,143:145:99:2766,303,0 chrXV 517989 . G A 4887.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.59;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4887,505,0 chrXV 518151 . A G 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=3.038;HaplotypeScore=12.1604;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.468;QD=24.04;ReadPosRankSum=1.122;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3846,408,0 chrXV 518299 . G A 3751.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.84;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3751,396,0 chrXV 518346 . T C 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=129;Dels=0.00;FS=4.204;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.148;QD=23.17;ReadPosRankSum=1.705;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3022,318,0 chrXV 518509 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=23.37;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2838,291,0 chrXV 518604 . T G 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=-0.301;QD=23.91;ReadPosRankSum=1.703;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2926,321,0 chrXV 518700 . A G 2588 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=20.70;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2621,288,0 chrXV 518701 . C T 2766 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=22.13;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2799,285,0 chrXV 518717 . T C 2527 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=20.71;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2560,273,0 chrXV 518743 . G A 1950 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;QD=16.53;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1983,207,0 chrXV 518748 . A G 1826 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.31;MQ0=0;QD=15.88;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1859,198,0 chrXV 518763 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=33.17;MQ0=0;QD=13.87;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1628,171,0 chrXV 518776 . A G 1629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=112;Dels=0.00;FS=2.851;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;MQRankSum=-0.011;QD=14.54;ReadPosRankSum=2.406;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1662,177,0 chrXV 518808 . G A 2004 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;QD=16.56;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2037,222,0 chrXV 518810 . T C 2098 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=17.06;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2131,228,0 chrXV 518814 . T C 2135 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=134;Dels=0.00;FS=6.732;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;MQRankSum=-1.349;QD=15.93;ReadPosRankSum=2.395;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2168,234,0 chrXV 518877 . C G 2813 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=22.15;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2846,294,0 chrXV 519037 . A C 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;MQRankSum=1.122;QD=20.90;ReadPosRankSum=1.704;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2646,288,0 chrXV 519048 . T A 2735 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=21.54;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2768,282,0 chrXV 519432 . C T 4472.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.84;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4472,463,0 chrXV 519516 . C G 4926.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=17.2648;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.35;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:4926,531,0 chrXV 519651 . A G 6513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=261;Dels=0.00;FS=5.433;HaplotypeScore=14.1596;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.421;QD=24.95;ReadPosRankSum=2.355;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:3,257:261:99:6513,691,0 chrXV 519771 . C T 6660.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=15.7554;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.29;SB=-3.787e+03 GT:AD:DP:GQ:PL 1/1:0,285:286:99:6660,700,0 chrXV 519868 . A T 5752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=234;Dels=0.00;FS=2.654;HaplotypeScore=12.4264;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.792;QD=24.58;ReadPosRankSum=2.366;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:2,232:234:99:5752,595,0 chrXV 520009 . G A 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.587;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.0904;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.735;QD=22.14;ReadPosRankSum=0.100;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4229,415,0 chrXV 520142 . G C 3082 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.83;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3115,333,0 chrXV 520282 . G A 3959.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=24.29;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3959,415,0 chrXV 520321 . C G 4363.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=24.24;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4363,460,0 chrXV 520372 . G A 3897.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=24.21;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3897,417,0 chrXV 520499 . A T 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;DP=160;Dels=0.00;FS=6.095;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;MQRankSum=-1.308;QD=20.06;ReadPosRankSum=2.906;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3242,336,0 chrXV 520515 . T G 3037 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=134.7665;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=17.06;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3070,333,0 chrXV 520650 . T C 4868.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=21.64;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4868,528,0 chrXV 520667 . G T 4809.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=20.82;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4809,516,0 chrXV 520674 . C A 4288.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=18.48;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:4288,471,0 chrXV 520701 . A T 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=200;Dels=0.00;FS=4.034;HaplotypeScore=6.2694;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;MQRankSum=-0.970;QD=17.06;ReadPosRankSum=1.628;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:3411,372,0 chrXV 520731 . A G 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.01;FS=0.000;HaplotypeScore=12.6519;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;MQRankSum=-0.179;QD=15.82;ReadPosRankSum=1.692;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:2802,303,0 chrXV 520774 . C T 3348.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=21.32;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3348,348,0 chrXV 520870 . G A 4058.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=21.59;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4058,432,0 chrXV 520872 . T C 4024.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=20.96;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4024,444,0 chrXV 521151 . T C 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=113;Dels=0.00;FS=3.032;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.991;QD=26.50;ReadPosRankSum=2.384;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:3028,318,0 chrXV 521292 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.48;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3068,324,0 chrXV 521415 . C T 3352.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=25.59;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3352,349,0 chrXV 521442 . G C 2937 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.60;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:2970,312,0 chrXV 521445 . G A 2981 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.29;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3014,318,0 chrXV 521639 . A T 4685.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=24.15;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4685,490,0 chrXV 521664 . C G 3876.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.53;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,175:180:99:3876,435,0 chrXV 521727 . T C 4179.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.2630;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.96;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4179,453,0 chrXV 521781 . A G 4483.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.87;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4483,486,0 chrXV 521864 . C T 5288.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.31;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5288,553,0 chrXV 522411 . T A 4327.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.30;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4327,448,0 chrXV 523000 . G A 2762 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=25.34;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2795,291,0 chrXV 523506 . C T 4250.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.37;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4250,445,0 chrXV 523527 . C T 4029.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.38;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4029,426,0 chrXV 523553 . C A 3661.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3691;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.28;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3661,393,0 chrXV 523905 . C T 4172.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.5317;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.25;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4172,436,0 chrXV 524124 . T C 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=182;Dels=0.00;FS=3.026;HaplotypeScore=12.9240;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.614;QD=24.71;ReadPosRankSum=2.423;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4498,475,0 chrXV 524250 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3685,385,0 chrXV 524541 . G A 4263.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.64;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4263,439,0 chrXV 524664 . T C 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=5.229;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.594;QD=21.20;ReadPosRankSum=1.633;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3001,333,0 chrXV 524711 . T A 2568 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.76;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2601,267,0 chrXV 524727 . T C 2397 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.99;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2430,261,0 chrXV 524958 . A C 1988 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=25.16;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2021,216,0 chrXV 525016 . T C 1558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.991;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.244;QD=18.12;ReadPosRankSum=2.221;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1591,174,0 chrXV 525148 . T A 3505.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=25.40;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3505,364,0 chrXV 525158 . G A 3593.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.44;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3593,384,0 chrXV 525385 . T A 2669 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.24;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2702,288,0 chrXV 525506 . G A 3289.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.73;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3289,354,0 chrXV 525568 . T C 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=111;Dels=0.00;FS=6.131;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=2.082;QD=21.30;ReadPosRankSum=2.900;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2397,261,0 chrXV 525601 . T C 3138 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.7217;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.14;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3171,333,0 chrXV 525838 . T C 5602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.279;QD=23.64;ReadPosRankSum=1.688;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:1,235:237:99:5602,595,0 chrXV 525985 . T C 7129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=296;Dels=0.00;FS=6.305;HaplotypeScore=13.0082;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.753;QD=24.08;ReadPosRankSum=2.383;SB=-3.824e+03 GT:AD:DP:GQ:PL 1/1:2,293:296:99:7129,760,0 chrXV 526015 . A T 6263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=264;Dels=0.00;FS=2.999;HaplotypeScore=15.1515;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.210;QD=23.72;ReadPosRankSum=2.394;SB=-3.220e+03 GT:AD:DP:GQ:PL 1/1:2,262:264:99:6263,655,0 chrXV 526144 . A C 5330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=225;Dels=0.00;FS=2.849;HaplotypeScore=15.4859;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.488;QD=23.69;ReadPosRankSum=2.417;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:5330,571,0 chrXV 526210 . C T 4531.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.4819;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.89;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4531,469,0 chrXV 526270 . C T 3939.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.2640;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.31;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3939,415,0 chrXV 526390 . T C 2279 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2312,243,0 chrXV 526435 . C T 2430 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.71;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2463,264,0 chrXV 526628 . A G 2884 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.45;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2917,312,0 chrXV 526705 . T A 3899.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=15.9697;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.63;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3899,417,0 chrXV 527008 . C A 3936.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=24.91;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3936,403,0 chrXV 527017 . A G 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=158;Dels=0.00;FS=2.882;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.505;QD=23.41;ReadPosRankSum=2.185;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3698,390,0 chrXV 527323 . T C 4091.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.8308;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.64;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4091,447,0 chrXV 527497 . G C 5463.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.95;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,235:238:99:5463,589,0 chrXV 527635 . C T 4219.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.84;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4219,445,0 chrXV 527698 . C T 3724.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0059;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.57;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3724,387,0 chrXV 527986 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.7793;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=25.35;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3075,324,0 chrXV 528085 . G T 3818.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.5117;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.28;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3818,400,0 chrXV 528112 . T G 2423 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.7550;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.19;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2456,276,0 chrXV 528237 . C T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.6493;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=20.35;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3439,369,0 chrXV 528349 . A T 3179 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=17.8954;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.37;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3212,336,0 chrXV 528477 . C T 2757 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.4295;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.88;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2790,297,0 chrXV 528487 . C T 2308 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5983;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.79;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2341,240,0 chrXV 528799 . A T 1630 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.17;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1663,171,0 chrXV 528813 . A G 1617 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.48;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1650,174,0 chrXV 529675 . G A 4931.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.51;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4931,508,0 chrXV 529807 . G C 3872.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.00;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:3872,423,0 chrXV 529863 . G A 4679.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.75;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4679,487,0 chrXV 530652 . C T 3822.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.34;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3822,402,0 chrXV 530757 . G A 3858.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.24;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3858,400,0 chrXV 530989 . G A 3750.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.51;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3750,402,0 chrXV 531421 . A G 1096 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:99:1129,120,0 chrXV 531654 . A C 2595 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.17;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2628,285,0 chrXV 532110 . C T 4279.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.17;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4279,436,0 chrXV 532911 . G A 4288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=177;Dels=0.00;FS=3.893;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.458;QD=24.23;ReadPosRankSum=1.394;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:4288,426,0 chrXV 533280 . A G 2706 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.2626;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.55;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2739,303,0 chrXV 533325 . T C 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.2269;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.493;QD=23.03;ReadPosRankSum=1.707;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3211,345,0 chrXV 533398 . A C 2850 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.55;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2883,306,0 chrXV 533423 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.53;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2879,294,0 chrXV 533520 . A G 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.214;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.759;QD=21.50;ReadPosRankSum=-0.389;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3848,405,0 chrXV 533544 . G A 4128.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=18.3544;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.07;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4128,430,0 chrXV 533625 . A G 4457.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.09;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4457,492,0 chrXV 533670 . A G 4263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.1983;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.059;QD=22.44;ReadPosRankSum=0.817;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:2,186:190:99:4263,445,0 chrXV 533983 . T C 4648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=190;Dels=0.00;FS=2.151;HaplotypeScore=10.4992;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.282;QD=24.46;ReadPosRankSum=1.612;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:3,186:190:99:4648,504,0 chrXV 534213 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.2944;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.16;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3239,333,0 chrXV 534218 . T C 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=158;Dels=0.00;FS=13.610;HaplotypeScore=10.2383;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=2.817;QD=19.85;ReadPosRankSum=3.370;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:4,154:158:99:3170,339,0 chrXV 534542 . C T 3226.07 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;QD=15.51;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3259,336,0 chrXV 534846 . G A 3640.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.79;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3640,384,0 chrXV 535103 . T C 5778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=231;Dels=0.00;FS=2.565;HaplotypeScore=24.9966;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.934;QD=25.01;ReadPosRankSum=2.943;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:3,226:231:99:5778,610,0 chrXV 535208 . C T 5290.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.04;FS=0.000;HaplotypeScore=33.7044;MLEAC=2;MLEAF=1.00;MQ=60.55;MQ0=0;QD=21.95;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5290,565,0 chrXV 535304 . A G 5609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=243;Dels=0.00;FS=2.567;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.641;QD=23.08;ReadPosRankSum=2.409;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:2,241:243:99:5609,600,0 chrXV 535577 . A G 5460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=214;Dels=0.00;FS=7.511;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.035;QD=25.51;ReadPosRankSum=2.403;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:2,211:214:99:5460,574,0 chrXV 535793 . A G 6037.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-3.204e+03 GT:AD:DP:GQ:PL 1/1:0,245:248:99:6037,634,0 chrXV 535943 . T C 5041.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:5041,552,0 chrXV 536145 . C T 4300.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.00;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:4300,439,0 chrXV 536192 . A G 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.483;DP=140;Dels=0.00;FS=3.649;HaplotypeScore=14.4263;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.084;QD=22.19;ReadPosRankSum=1.682;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3139,339,0 chrXV 536237 . T C 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.562;QD=24.66;ReadPosRankSum=1.710;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3797,411,0 chrXV 536384 . G A 3783.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.64;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3783,399,0 chrXV 536410 . C T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.28;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3861,400,0 chrXV 536558 . C T 2980 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.59;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3013,318,0 chrXV 536756 . T A 2855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=4.013;HaplotypeScore=11.2801;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.256;QD=21.63;ReadPosRankSum=1.679;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2888,303,0 chrXV 536862 . A G 1364 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=129.5121;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=17.05;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1397,153,0 chrXV 536881 . C T 1052 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=14.61;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1085,117,0 chrXV 537053 . T C 107.26 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=15.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:15:140,15,0 chrXV 537121 . T C 84.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:117,12,0 chrXV 537181 . C T 204.03 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=63.93;MQ0=0;QD=25.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:24:237,24,0 chrXV 537445 . C T 1903 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.40;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1936,207,0 chrXV 537484 . T C 3732.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=25.39;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3732,402,0 chrXV 537556 . C T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.8449;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.01;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3613,384,0 chrXV 537611 . T C 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.822;QD=24.71;ReadPosRankSum=2.416;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3583,381,0 chrXV 537738 . C T 4300.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.24;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,181:185:99:4300,459,0 chrXV 537790 . G C 4081.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.58;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4081,433,0 chrXV 538068 . G C 2683 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.33;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2716,294,0 chrXV 538230 . G A 3975.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=26.15;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3975,403,0 chrXV 538299 . A G 3211.99 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=26.11;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3245,345,0 chrXV 538389 . A G 3158 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.22;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3191,336,0 chrXV 538395 . G A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=23.54;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3366,354,0 chrXV 538466 . T C 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.770;DP=146;Dels=0.00;FS=11.101;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.056;QD=21.46;ReadPosRankSum=2.714;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:3,141:146:99:3166,339,0 chrXV 538489 . A G 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.518;QD=22.31;ReadPosRankSum=1.555;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3089,321,0 chrXV 538583 . A G 1976 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=106;Dels=0.00;FS=8.985;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=-1.103;QD=18.64;ReadPosRankSum=2.403;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2009,222,0 chrXV 538584 . C A 2077 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.78;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2110,222,0 chrXV 538585 . C T 2131 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.30;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2164,222,0 chrXV 538758 . G A 2657 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.10;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2690,294,0 chrXV 538794 . G A 2807 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=24.41;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2840,303,0 chrXV 538866 . C T 3731.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.32;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3731,388,0 chrXV 538917 . G C 3367.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.86;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,149:154:99:3367,372,0 chrXV 539133 . C T 6049.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=25.00;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:6049,625,0 chrXV 539577 . T C 2868 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=23.32;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2901,306,0 chrXV 539639 . A T 2279 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=21.91;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2312,237,0 chrXV 539640 . A C 2151 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.49;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2184,234,0 chrXV 539719 . G A 2815 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.91;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2848,300,0 chrXV 540873 . A G 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.773;DP=173;Dels=0.00;FS=5.738;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=2.622;QD=22.16;ReadPosRankSum=2.913;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3834,411,0 chrXV 540930 . T C 3039 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.4871;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.86;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3072,327,0 chrXV 540998 . C T 3476.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.87;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3476,366,0 chrXV 541182 . G A 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.035;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.0023;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.605;QD=23.05;ReadPosRankSum=-0.444;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3826,376,0 chrXV 541377 . A G 5684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=226;Dels=0.00;FS=7.020;HaplotypeScore=9.0101;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=2.167;QD=25.15;ReadPosRankSum=2.363;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:5684,592,0 chrXV 541674 . C T 4454.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.8965;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.60;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4454,466,0 chrXV 541939 . T C 4216.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.91;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4216,459,0 chrXV 542319 . A T 3750.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.04;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3750,405,0 chrXV 542472 . T G 4314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=186;Dels=0.00;FS=6.580;HaplotypeScore=15.1684;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.325;QD=23.19;ReadPosRankSum=2.423;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4314,465,0 chrXV 542699 . A G 4520.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.4300;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.79;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4520,483,0 chrXV 542841 . T C 5204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=236;Dels=0.00;FS=3.724;HaplotypeScore=13.8085;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.097;QD=22.05;ReadPosRankSum=1.717;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:1,232:236:99:5204,541,0 chrXV 542889 . T C 4331.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.4366;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.76;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4331,462,0 chrXV 542952 . A G 6154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.313;DP=273;Dels=0.00;FS=15.902;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.294;QD=22.54;ReadPosRankSum=3.403;SB=-2.789e+03 GT:AD:DP:GQ:PL 1/1:4,266:273:99:6154,687,0 chrXV 543081 . T C 4477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=195;Dels=0.00;FS=3.078;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.637;QD=22.96;ReadPosRankSum=1.678;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4477,477,0 chrXV 543282 . C T 3959.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.14;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3959,406,0 chrXV 546198 . G A 4011.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4011,409,0 chrXV 550623 . T C 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=1.110;QD=21.41;ReadPosRankSum=1.703;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2538,273,0 chrXV 550636 . A G 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=5.441;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.990;QD=21.41;ReadPosRankSum=1.705;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2731,291,0 chrXV 551369 . C G 5664.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.80;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5664,604,0 chrXV 551813 . G A 4543.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=24.04;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4543,466,0 chrXV 551830 . G A 4286.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.6593;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.21;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4286,442,0 chrXV 552069 . C T 4379.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.2427;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=24.06;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4379,454,0 chrXV 552421 . A T 5053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=220;Dels=0.00;FS=6.833;HaplotypeScore=23.0676;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.073;QD=22.97;ReadPosRankSum=2.427;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:2,217:220:99:5053,535,0 chrXV 552775 . C G 4176.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.16;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4176,439,0 chrXV 553072 . A G 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.401;DP=152;Dels=0.00;FS=12.451;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.178;QD=23.70;ReadPosRankSum=3.401;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:4,148:152:99:3603,390,0 chrXV 553085 . C T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.15;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3589,375,0 chrXV 553150 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.461;DP=158;Dels=0.00;FS=12.261;HaplotypeScore=10.3194;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.161;QD=20.70;ReadPosRankSum=3.753;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:5,151:158:99:3271,354,0 chrXV 553386 . C T 3779.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.08;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:3779,394,0 chrXV 553950 . C T 4535.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.6580;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.39;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4535,480,0 chrXV 554076 . G A 3703.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3703,396,0 chrXV 554500 . T C 4531.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=15.6649;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.68;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4531,483,0 chrXV 555451 . A G 4626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=203;Dels=0.00;FS=6.399;HaplotypeScore=13.0292;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.927;QD=22.79;ReadPosRankSum=2.376;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:2,198:203:99:4626,498,0 chrXV 556870 . T G 3391.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.7871;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.22;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3391,354,0 chrXV 557021 . T A 4427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.378;QD=22.47;ReadPosRankSum=1.679;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4427,457,0 chrXV 557194 . T G 4700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=183;Dels=0.00;FS=6.189;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.315;QD=25.68;ReadPosRankSum=2.423;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4700,493,0 chrXV 557623 . T C 4143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.3233;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.385;QD=22.76;ReadPosRankSum=1.655;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:4143,453,0 chrXV 557722 . T C 2997 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3030,324,0 chrXV 557758 . A G 3167 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3200,342,0 chrXV 557821 . T G 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=182;Dels=0.00;FS=10.316;HaplotypeScore=6.0456;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.586;QD=23.28;ReadPosRankSum=2.873;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:4237,456,0 chrXV 558155 . G C 3584.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,148:153:99:3584,370,0 chrXV 558381 . T A 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.103;DP=156;Dels=0.00;FS=3.038;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.874;QD=23.37;ReadPosRankSum=2.339;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3646,387,0 chrXV 558497 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.71;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2769,285,0 chrXV 558913 . G C 3510.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3510,375,0 chrXV 558953 . G A 4331.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.75;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4331,448,0 chrXV 559459 . T C 4619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=203;Dels=0.00;FS=3.609;HaplotypeScore=6.6209;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.875;QD=22.75;ReadPosRankSum=1.681;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4619,496,0 chrXV 559465 . C T 4682.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=23.29;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4682,475,0 chrXV 559477 . T C 4468.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=22.23;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4468,477,0 chrXV 559714 . T A 2301 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.6722;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.50;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2334,246,0 chrXV 559768 . T G 2565 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.75;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2598,276,0 chrXV 560189 . T A 4514.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.0940;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.80;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4514,469,0 chrXV 560432 . G A 3463.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.34;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3463,372,0 chrXV 560610 . A G 4757.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.7333;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.27;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4757,505,0 chrXV 560807 . A G 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.207;DP=182;Dels=0.01;FS=10.527;HaplotypeScore=122.9377;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.769;QD=14.73;ReadPosRankSum=3.016;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:6,174:181:99:2714,294,0 chrXV 561511 . G A 5298.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=16.7758;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.65;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5298,541,0 chrXV 562082 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.16;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3659,384,0 chrXV 562162 . C T 3284.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.07;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3284,340,0 chrXV 562357 . G A 4361.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.64;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4361,451,0 chrXV 562468 . A G 3434.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.35;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3434,366,0 chrXV 562567 . C T 3586.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.23;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3586,370,0 chrXV 562672 . G C 3576.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.21;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3576,399,0 chrXV 562688 . A C 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=165;Dels=0.00;FS=12.515;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.117;QD=22.02;ReadPosRankSum=2.883;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:3,160:165:99:3633,387,0 chrXV 562828 . G A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.37;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3258,336,0 chrXV 563008 . G A 2709 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2742,285,0 chrXV 563766 . T C 3355.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.1647;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.79;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3355,354,0 chrXV 563862 . A G 3217.04 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.87;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3250,348,0 chrXV 563917 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=25.21;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3605,370,0 chrXV 563945 . A G 3129 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=24.64;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3162,330,0 chrXV 564207 . T G 3585.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.55;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3585,396,0 chrXV 564208 . C A 3892.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=24.48;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3892,400,0 chrXV 564258 . C T 2058 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=19.06;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2091,219,0 chrXV 564299 . G C 1857 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.87;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1890,207,0 chrXV 564451 . A G 2388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=3.293;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.983;QD=21.51;ReadPosRankSum=1.701;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2421,264,0 chrXV 564575 . C T 4006.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.04;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4006,420,0 chrXV 565820 . A G 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.2009;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.507;QD=20.93;ReadPosRankSum=2.352;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3746,399,0 chrXV 565891 . T C 3818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.798;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.1694;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.094;QD=21.94;ReadPosRankSum=1.052;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3818,401,0 chrXV 566126 . T A 3961.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.3726;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.72;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3961,423,0 chrXV 566165 . T C 4274.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.6350;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.86;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4274,457,0 chrXV 566210 . A G 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=165;Dels=0.00;FS=3.009;HaplotypeScore=15.2131;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.535;QD=22.39;ReadPosRankSum=2.419;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3694,393,0 chrXV 566353 . G A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.82;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3309,334,0 chrXV 566373 . A C 3170 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.31;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3203,339,0 chrXV 566430 . G T 2316 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.4125;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.93;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2349,240,0 chrXV 566501 . T C 2069 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=21.11;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2102,234,0 chrXV 566502 . A G 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=99;Dels=0.00;FS=2.602;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=-0.186;QD=19.91;ReadPosRankSum=2.867;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:3,95:99:99:2004,219,0 chrXV 566542 . A C 1864 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.18;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1897,201,0 chrXV 566564 . A C 1688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=89;Dels=0.00;FS=6.170;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.193;QD=18.97;ReadPosRankSum=2.921;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:3,86:89:99:1721,189,0 chrXV 566820 . A T 3634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=145;Dels=0.00;FS=4.712;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.302;QD=25.06;ReadPosRankSum=1.660;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3634,387,0 chrXV 567085 . T C 4314.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.0283;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.79;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4314,462,0 chrXV 567262 . G A 3478.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.9108;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=21.87;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3478,358,0 chrXV 567267 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.4154;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=22.08;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3356,346,0 chrXV 567276 . A G 3147 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.1428;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.17;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3180,339,0 chrXV 567367 . C T 3427.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3427,355,0 chrXV 568141 . T C 4544.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.67;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4544,478,0 chrXV 568707 . G A 3057 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.8953;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.69;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3090,318,0 chrXV 569058 . T A 4422.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.03;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4422,466,0 chrXV 569259 . A G 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.4992;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.557;QD=23.11;ReadPosRankSum=1.712;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4022,432,0 chrXV 569690 . G A 2277 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=105.7824;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=16.87;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2310,240,0 chrXV 569770 . C T 3287.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.21;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3287,342,0 chrXV 569787 . A G 2983 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.30;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3016,318,0 chrXV 569825 . C T 2476 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.63;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2509,267,0 chrXV 570373 . A T 3794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=169;Dels=0.00;FS=3.024;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.400;QD=22.45;ReadPosRankSum=2.391;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3794,394,0 chrXV 571079 . T C 5641.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.53;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5641,618,0 chrXV 571108 . C T 5279.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.55;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5279,547,0 chrXV 571256 . A C 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=165;Dels=0.00;FS=2.578;HaplotypeScore=14.1324;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.396;QD=21.01;ReadPosRankSum=2.945;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3466,369,0 chrXV 571300 . G T 3758.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.74;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3758,388,0 chrXV 571406 . A G 4989.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.32;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4989,537,0 chrXV 571487 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.5555;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.94;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3807,414,0 chrXV 571939 . G A 2794 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=24.73;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2827,297,0 chrXV 571945 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=25.25;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2608,273,0 chrXV 572041 . G A 1587 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=22.35;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1620,168,0 chrXV 572098 . G A 1565 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.20;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1598,165,0 chrXV 572102 . C T 1553 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=18.49;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1586,162,0 chrXV 572407 . T C 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.263;QD=22.10;ReadPosRankSum=1.677;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2795,297,0 chrXV 572419 . T C 2860 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.67;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2893,315,0 chrXV 572941 . A G 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.282;DP=178;Dels=0.00;FS=5.242;HaplotypeScore=20.3217;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.114;QD=21.24;ReadPosRankSum=3.410;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:4,173:178:99:3781,414,0 chrXV 572989 . A G 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=160;Dels=0.00;FS=3.413;HaplotypeScore=15.9503;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.009;QD=22.69;ReadPosRankSum=1.688;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3631,390,0 chrXV 573228 . T C 6793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.101;QD=22.42;ReadPosRankSum=2.369;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:2,301:303:99:6793,730,0 chrXV 573248 . A G 5887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=259;Dels=0.00;FS=5.234;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=0.182;QD=22.73;ReadPosRankSum=1.692;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:1,256:259:99:5887,625,0 chrXV 573312 . T C 5195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=239;Dels=0.00;FS=3.215;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-0.210;QD=21.74;ReadPosRankSum=1.718;SB=-3.146e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5195,573,0 chrXV 573324 . A T 6009.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=22.51;SB=-3.293e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:6009,628,0 chrXV 573358 . A G 5446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=9.2980;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=0.209;QD=19.31;ReadPosRankSum=1.720;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:1,281:282:99:5446,585,0 chrXV 573377 . A G 5047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=272;Dels=0.00;FS=2.528;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-0.458;QD=18.56;ReadPosRankSum=2.886;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:3,269:272:99:5047,540,0 chrXV 573378 . A G 5107.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=18.91;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:5107,546,0 chrXV 573442 . C T 5553.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.80;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:5553,574,0 chrXV 574266 . A T 6824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=273;Dels=0.00;FS=6.842;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.871;QD=25.00;ReadPosRankSum=2.404;SB=-3.380e+03 GT:AD:DP:GQ:PL 1/1:2,271:273:99:6824,700,0 chrXV 574378 . G A 7232.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=12.0219;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.52;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,294:295:99:7232,745,0 chrXV 574716 . C T 3056 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3089,324,0 chrXV 574776 . T C 4068.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.2838;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.44;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4068,438,0 chrXV 574821 . C T 3345.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.3684;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.40;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3345,357,0 chrXV 577461 . C T 2675 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=27.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2708,282,0 chrXV 577639 . A G 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;MQRankSum=1.130;QD=23.24;ReadPosRankSum=2.359;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3217,342,0 chrXV 577770 . T A 2482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.350;DP=99;Dels=0.00;FS=8.381;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=-1.288;QD=25.07;ReadPosRankSum=3.368;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:4,95:99:99:2515,258,0 chrXV 577827 . C T 2506 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.03;FS=0.000;HaplotypeScore=8.1104;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=23.20;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2539,261,0 chrXV 577890 . C T 2124 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.60;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2157,222,0 chrXV 577985 . G T 3391.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.22;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3391,352,0 chrXV 578058 . G A 3284.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.7898;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.65;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3284,340,0 chrXV 578644 . T C 4702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=205;Dels=0.00;FS=2.814;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.053;QD=22.94;ReadPosRankSum=2.389;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4702,513,0 chrXV 578704 . A T 5000.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5000,526,0 chrXV 578986 . T C 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=150;Dels=0.00;FS=3.837;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.370;QD=22.57;ReadPosRankSum=1.709;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3386,363,0 chrXV 579050 . T C 4176.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.56;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4176,445,0 chrXV 579079 . A G 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.538;DP=159;Dels=0.00;FS=11.584;HaplotypeScore=8.7762;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.173;QD=23.08;ReadPosRankSum=3.666;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:5,154:159:99:3670,390,0 chrXV 579131 . A T 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=3.731;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.141;QD=23.91;ReadPosRankSum=1.671;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4065,435,0 chrXV 579389 . A G 5898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=247;Dels=0.00;FS=3.680;HaplotypeScore=14.7746;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=1.506;QD=23.88;ReadPosRankSum=1.718;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:1,244:247:99:5898,628,0 chrXV 580144 . T A 113.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.742;QD=16.18;ReadPosRankSum=0.742;SB=-6.176e+01 GT:AD:DP:GQ:PL 1/1:1,6:7:15:146,15,0 chrXV 580206 . A G 248 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=17.71;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:30:281,30,0 chrXV 580333 . C G 3603.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=27.72;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3603,376,0 chrXV 580495 . G A 3620.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3620,381,0 chrXV 580579 . T C 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.434;HaplotypeScore=8.1863;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.886;QD=21.50;ReadPosRankSum=1.712;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,171:175:99:3762,396,0 chrXV 580595 . T C 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=170;Dels=0.00;FS=6.254;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.889;QD=22.08;ReadPosRankSum=2.406;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3753,381,0 chrXV 580924 . G A 4882.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.9134;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.43;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4882,502,0 chrXV 581173 . G A 4379.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.3190;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.79;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4379,457,0 chrXV 581278 . A T 2360 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.1871;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.17;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2393,252,0 chrXV 581305 . G A 2443 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3001;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.21;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2476,258,0 chrXV 581392 . A G 2111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.857;QD=21.76;ReadPosRankSum=1.696;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2144,228,0 chrXV 581450 . T C 1006 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.87;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1039,111,0 chrXV 581692 . A G 338 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=6.2728;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=12.07;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,26:28:42:371,42,0 chrXV 581732 . G A 1063 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.44;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,49:52:99:1096,123,0 chrXV 582005 . C T 3871.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.37;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3871,394,0 chrXV 582590 . G A 2894 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.34;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2927,303,0 chrXV 582755 . T C 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.672;QD=23.26;ReadPosRankSum=1.672;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2731,297,0 chrXV 582812 . G C 2267 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.45;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2300,252,0 chrXV 583591 . G A 3154 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.69;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3187,328,0 chrXV 583715 . A G 2454 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2487,270,0 chrXV 584081 . T C 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.375;QD=21.61;ReadPosRankSum=1.696;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,96:99:99:2172,231,0 chrXV 585188 . A G 3919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.273;DP=196;Dels=0.00;FS=8.780;HaplotypeScore=12.9239;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.076;QD=19.99;ReadPosRankSum=3.309;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:4,192:196:99:3919,420,0 chrXV 585314 . T C 4969.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=18.9101;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.70;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4969,532,0 chrXV 585644 . T C 7739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=342;Dels=0.00;FS=8.071;HaplotypeScore=18.4924;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.475;QD=22.63;ReadPosRankSum=3.374;SB=-3.639e+03 GT:AD:DP:GQ:PL 1/1:4,335:342:99:7739,820,0 chrXV 585683 . T C 7575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=339;Dels=0.00;FS=0.000;HaplotypeScore=25.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.615;QD=22.35;ReadPosRankSum=1.691;SB=-4.325e+03 GT:AD:DP:GQ:PL 1/1:1,337:339:99:7575,808,0 chrXV 585728 . T C 6410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=285;Dels=0.00;FS=3.004;HaplotypeScore=21.0452;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.831;QD=22.49;ReadPosRankSum=2.423;SB=-3.205e+03 GT:AD:DP:GQ:PL 1/1:2,280:285:99:6410,702,0 chrXV 585808 . T C 6919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=312;Dels=0.00;FS=7.211;HaplotypeScore=16.1934;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=2.235;QD=22.18;ReadPosRankSum=2.402;SB=-3.670e+03 GT:AD:DP:GQ:PL 1/1:2,307:312:99:6919,750,0 chrXV 585970 . T C 5281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=232;Dels=0.00;FS=3.144;HaplotypeScore=19.7629;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.282;QD=22.76;ReadPosRankSum=1.717;SB=-2.922e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:5281,567,0 chrXV 586076 . A T 5417.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.63;SB=-3.578e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:5417,565,0 chrXV 586108 . C T 3717.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=17.21;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:3717,396,0 chrXV 586109 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=16.85;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:3605,390,0 chrXV 586143 . G A 3652.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.4395;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=16.99;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:3652,379,0 chrXV 586164 . T C 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=204;Dels=0.00;FS=3.581;HaplotypeScore=6.6706;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=1.101;QD=17.38;ReadPosRankSum=1.715;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:3545,378,0 chrXV 586304 . T C 4656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=232;Dels=0.00;FS=3.905;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=1.432;QD=20.07;ReadPosRankSum=1.687;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:4656,501,0 chrXV 586402 . T C 4861.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.50;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4861,514,0 chrXV 586600 . A G 4448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=184;Dels=0.00;FS=2.745;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.728;QD=24.17;ReadPosRankSum=2.396;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4448,469,0 chrXV 586839 . A G 3914.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.62;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3914,429,0 chrXV 587077 . G A 4729.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.6490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4729,490,0 chrXV 587142 . A G 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=179;Dels=0.00;FS=3.720;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.093;QD=19.72;ReadPosRankSum=1.655;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3530,384,0 chrXV 587178 . C T 4586.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=16.0253;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.27;SB=-2.946e+03 GT:AD:DP:GQ:PL 1/1:0,234:238:99:4586,475,0 chrXV 587265 . T C 6403.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=18.2362;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.23;SB=-3.561e+03 GT:AD:DP:GQ:PL 1/1:0,287:288:99:6403,699,0 chrXV 587316 . C T 6214.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=13.8188;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.36;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6214,667,0 chrXV 587400 . C T 6289.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=9.4948;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.76;SB=-3.426e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6289,658,0 chrXV 587460 . T C 5046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=218;Dels=0.00;FS=5.670;HaplotypeScore=11.7875;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.065;QD=23.15;ReadPosRankSum=1.716;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,213:218:99:5046,543,0 chrXV 587490 . C G 4201.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.65;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,190:194:99:4201,459,0 chrXV 587565 . C T 5317.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.6223;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.95;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5317,568,0 chrXV 587691 . G A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.15;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3744,391,0 chrXV 587816 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.89;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3282,339,0 chrXV 587817 . C T 3172 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.22;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3205,333,0 chrXV 588288 . C T 5943.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=26.8039;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.21;SB=-3.460e+03 GT:AD:DP:GQ:PL 1/1:0,291:294:99:5943,639,0 chrXV 588756 . G A 4268.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.1550;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.95;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4268,453,0 chrXV 588933 . T A 4311.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.81;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4311,451,0 chrXV 589016 . C T 3538.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.91;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3538,367,0 chrXV 589146 . T C 3081 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.14;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3114,345,0 chrXV 589221 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.06;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3100,336,0 chrXV 589248 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.98;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3132,321,0 chrXV 589272 . T C 3108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=155;Dels=0.00;FS=4.973;HaplotypeScore=2.7499;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.832;QD=20.05;ReadPosRankSum=1.710;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3141,339,0 chrXV 589303 . G A 2841 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.36;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2874,297,0 chrXV 589429 . T C 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.681;QD=23.38;ReadPosRankSum=1.660;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3390,363,0 chrXV 589839 . C T 2093 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.6416;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=22.03;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2126,216,0 chrXV 589882 . C T 2056 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=21.42;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2089,216,0 chrXV 589883 . G T 2018 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=21.02;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2051,210,0 chrXV 590260 . A T 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=167;Dels=0.00;FS=5.550;HaplotypeScore=13.2643;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.127;QD=23.40;ReadPosRankSum=2.946;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3908,403,0 chrXV 590443 . A G 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.603;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-1.035;QD=21.38;ReadPosRankSum=1.709;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3240,351,0 chrXV 590452 . G T 3046 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.1745;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.45;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3079,321,0 chrXV 590749 . G A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.89;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3503,364,0 chrXV 591076 . G A 4691.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=25.09;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4691,481,0 chrXV 591118 . G A 3860.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=24.13;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3860,397,0 chrXV 591121 . A G 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=0.936;QD=22.98;ReadPosRankSum=1.711;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3722,390,0 chrXV 591202 . G A 3514.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.53;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3514,364,0 chrXV 591532 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=14.6281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2968,312,0 chrXV 591630 . A G 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=4.124;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.928;QD=22.15;ReadPosRankSum=1.670;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3766,402,0 chrXV 591684 . G A 4143.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4143,427,0 chrXV 591787 . T A 3029 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.60;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3062,324,0 chrXV 591850 . C T 3153 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3186,342,0 chrXV 591904 . G A 3189 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.98;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3222,339,0 chrXV 592238 . C T 4169.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.04;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4169,433,0 chrXV 592245 . C T 4300.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=19.03;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4300,454,0 chrXV 592540 . A G 7245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.300;DP=345;Dels=0.00;FS=5.195;HaplotypeScore=24.3254;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=0.295;QD=21.00;ReadPosRankSum=3.426;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:4,341:345:99:7245,795,0 chrXV 592588 . G A 6439.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=5.2945;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=20.31;SB=-3.030e+03 GT:AD:DP:GQ:PL 1/1:0,317:317:99:6439,691,0 chrXV 592592 . G C 5825.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=19.55;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:0,293:298:99:5825,642,0 chrXV 592863 . T G 4158.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.3894;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.20;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4158,439,0 chrXV 592976 . T A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.2780;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.38;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3400,360,0 chrXV 593587 . A G 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=116;Dels=0.00;FS=6.211;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.177;QD=24.23;ReadPosRankSum=2.407;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2844,303,0 chrXV 593851 . G T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.18;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3530,378,0 chrXV 593956 . A G 2126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=107;Dels=0.00;FS=2.784;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=0.888;QD=19.87;ReadPosRankSum=2.260;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:2,102:107:99:2159,234,0 chrXV 593957 . C A 2222 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.39;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2255,237,0 chrXV 594020 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.3937;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.92;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2404,246,0 chrXV 594122 . G A 2373 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.8906;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.39;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2406,246,0 chrXV 594199 . T A 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=65;Dels=0.02;FS=3.590;HaplotypeScore=7.9873;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.650;QD=25.49;ReadPosRankSum=1.678;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1690,174,0 chrXV 594267 . C T 1938 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=25.84;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1971,207,0 chrXV 594306 . A G 56.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.411;DP=82;Dels=0.00;FS=11.716;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;MQRankSum=-2.025;QD=0.69;ReadPosRankSum=-3.750;SB=2.49 GT:AD:DP:GQ:PL 1/1:75,7:82:12:89,12,0 chrXV 594439 . T A 2136 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=21.58;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2169,237,0 chrXV 594446 . A G 2189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=7.011;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;MQRankSum=-1.344;QD=22.11;ReadPosRankSum=2.299;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2222,240,0 chrXV 594455 . G C 2275 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=22.75;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2308,249,0 chrXV 594499 . G C 2602 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=21.87;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2635,288,0 chrXV 594586 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.2879;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=26.09;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3365,351,0 chrXV 594667 . A G 1607 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.36;MQ0=0;QD=21.43;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1640,183,0 chrXV 594673 . T C 1366 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=69;Dels=0.00;FS=9.294;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.67;MQ0=0;MQRankSum=-1.274;QD=19.80;ReadPosRankSum=1.681;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1399,159,0 chrXV 594677 . G A 1442 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.80;MQ0=0;QD=21.21;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1475,162,0 chrXV 594684 . A G 1378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;MQRankSum=-0.666;QD=21.20;ReadPosRankSum=1.679;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1411,159,0 chrXV 594720 . A C 1343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=1.570;QD=20.98;ReadPosRankSum=1.678;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1376,153,0 chrXV 594737 . C T 1738 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=24.83;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1771,183,0 chrXV 594821 . T C 676 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.06;MQ0=0;QD=15.36;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:44:84:709,84,0 chrXV 600811 . C G 908 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=21.12;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:941,99,0 chrXV 600853 . A T 519 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.37;MQ0=0;QD=12.66;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:57:552,57,0 chrXV 600857 . A C 562 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;QD=12.49;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:63:595,63,0 chrXV 600864 . A T 509 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=9.98;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:57:542,57,0 chrXV 600877 . C T 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.08;MQ0=0;QD=0.45;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:60:6:58,6,0 chrXV 600976 . T C 1624 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.56;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1657,177,0 chrXV 600978 . G C 1589 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=23.03;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1622,168,0 chrXV 601015 . G A 1273 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=19.00;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1306,138,0 chrXV 601201 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=25.45;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1662,174,0 chrXV 601255 . C T 2000 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=25.00;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2033,213,0 chrXV 601297 . G T 1963 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=19.83;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1996,210,0 chrXV 601307 . C T 2307 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.56;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2340,237,0 chrXV 601463 . T C 4105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=171;Dels=0.00;FS=2.624;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.516;QD=24.01;ReadPosRankSum=2.421;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:2,167:171:99:4105,444,0 chrXV 601482 . A G 3707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=4.316;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.495;QD=23.92;ReadPosRankSum=1.687;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3707,399,0 chrXV 601569 . C T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.1463;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.56;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3610,370,0 chrXV 601702 . C T 3990.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.2392;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.47;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3990,412,0 chrXV 601749 . C T 3469.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.53;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3469,363,0 chrXV 601761 . A G 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=4.202;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.277;QD=21.39;ReadPosRankSum=1.709;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3242,345,0 chrXV 601776 . T C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=152;Dels=0.00;FS=2.912;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=0.412;QD=20.70;ReadPosRankSum=2.385;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3180,339,0 chrXV 601817 . A G 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.611;QD=19.60;ReadPosRankSum=1.707;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2699,288,0 chrXV 601911 . A G 3505.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.37;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3505,372,0 chrXV 602229 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.81;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2633,267,0 chrXV 602250 . G A 2427 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.57;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2460,249,0 chrXV 602578 . A G 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.1081;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.255;QD=24.02;ReadPosRankSum=1.670;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:4035,438,0 chrXV 602686 . C A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.36;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3654,384,0 chrXV 602888 . G A 3196 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.1099;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.83;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3229,342,0 chrXV 602945 . C T 3813.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.54;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3813,394,0 chrXV 603046 . C T 2660 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.35;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2693,285,0 chrXV 603257 . C G 2821 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1753;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.90;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2854,300,0 chrXV 603266 . C T 2720 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.30;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2753,288,0 chrXV 603325 . G A 3286.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.51;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3286,342,0 chrXV 603468 . A G 4137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=165;Dels=0.00;FS=9.438;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.588;QD=25.07;ReadPosRankSum=2.405;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:4137,444,0 chrXV 603549 . T C 4308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=186;Dels=0.00;FS=6.085;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.973;QD=23.16;ReadPosRankSum=2.433;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:4308,457,0 chrXV 603694 . A G 3950.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.2351;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.65;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3950,420,0 chrXV 603740 . C T 4169.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.1067;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.82;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4169,442,0 chrXV 603949 . G A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.69;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3608,373,0 chrXV 603992 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=23.34;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3758,399,0 chrXV 604007 . C T 3644.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.2513;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=23.36;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3644,373,0 chrXV 604260 . G A 4506.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.87;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4506,466,0 chrXV 604413 . A G 4258.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=3.211;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.862;QD=21.29;ReadPosRankSum=1.715;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4258,453,0 chrXV 604415 . C G 4179.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.59;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,199:203:99:4179,459,0 chrXV 604521 . G C 3639.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.78;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3639,396,0 chrXV 604572 . A T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.19;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3461,372,0 chrXV 604757 . C T 4869.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.36;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4869,508,0 chrXV 605280 . T C 3130 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.06;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3163,339,0 chrXV 605294 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.08;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3520,364,0 chrXV 605911 . T C 5099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=229;Dels=0.00;FS=2.576;HaplotypeScore=20.0631;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.633;QD=22.27;ReadPosRankSum=2.951;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:3,224:229:99:5099,555,0 chrXV 605978 . G A 5933.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=14.1571;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.54;SB=-2.819e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5933,622,0 chrXV 606232 . G A 4231.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=24.74;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4231,447,0 chrXV 606329 . G T 3959.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=127.0456;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=23.85;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3959,415,0 chrXV 606373 . A G 2094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=133;Dels=0.00;FS=6.072;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=0;MQRankSum=-1.771;QD=15.74;ReadPosRankSum=2.947;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:2127,234,0 chrXV 606393 . T G 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=131;Dels=0.00;FS=6.395;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.65;MQ0=0;MQRankSum=-1.868;QD=14.50;ReadPosRankSum=2.393;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:1932,207,0 chrXV 606412 . T G 1609 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=12.77;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1642,174,0 chrXV 606849 . G T 4395.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.7272;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4395,466,0 chrXV 606886 . C T 4268.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4268,442,0 chrXV 607617 . T C 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.140;QD=22.47;ReadPosRankSum=1.673;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2685,297,0 chrXV 607837 . G A 3221.02 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3254,337,0 chrXV 608367 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.95;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3518,375,0 chrXV 608505 . T C 1857 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.38;MQ0=0;QD=21.59;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1890,198,0 chrXV 608673 . A G 2000 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.20;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2033,219,0 chrXV 608682 . T C 1884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.1436;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.090;QD=17.94;ReadPosRankSum=2.168;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:1917,198,0 chrXV 608836 . T C 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=130;Dels=0.00;FS=3.044;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.420;QD=20.68;ReadPosRankSum=2.335;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2721,297,0 chrXV 608958 . A G 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.472;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.417;QD=21.98;ReadPosRankSum=-0.661;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2451,246,0 chrXV 609109 . G A 2470 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.9861;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.41;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2503,255,0 chrXV 609135 . C T 1093 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.04;FS=0.000;HaplotypeScore=9.9054;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=10.61;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1126,120,0 chrXV 609276 . C T 3834.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.58;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3834,400,0 chrXV 609344 . G T 4032.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=23.31;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4032,426,0 chrXV 609537 . C T 4237.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=24.07;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4237,436,0 chrXV 609558 . A G 3787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-2.210;QD=22.95;ReadPosRankSum=2.390;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3787,405,0 chrXV 609773 . G A 3324.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.0219;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.44;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3324,343,0 chrXV 609836 . T C 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.129;QD=24.41;ReadPosRankSum=1.710;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3783,402,0 chrXV 609918 . A T 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.634;QD=22.56;ReadPosRankSum=1.659;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3236,345,0 chrXV 610300 . T C 5048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=219;Dels=0.00;FS=3.814;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.261;QD=23.05;ReadPosRankSum=1.716;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:5048,555,0 chrXV 610420 . C A 5490.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.29;SB=-2.790e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5490,565,0 chrXV 610496 . G C 4587.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.53;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4587,487,0 chrXV 610549 . G A 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.3746;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.640;QD=22.68;ReadPosRankSum=1.669;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3743,385,0 chrXV 610554 . C G 3531.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.2960;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.80;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3531,375,0 chrXV 610660 . G A 3763.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.97;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3763,399,0 chrXV 610864 . A G 2319 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=24.67;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2352,258,0 chrXV 610882 . A C 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=105;Dels=0.00;FS=3.449;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-0.366;QD=20.39;ReadPosRankSum=1.632;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2174,231,0 chrXV 610892 . A T 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=3.836;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.766;QD=21.30;ReadPosRankSum=1.699;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2248,231,0 chrXV 610939 . T C 2766 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.78;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2799,294,0 chrXV 611029 . T G 2145 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2178,231,0 chrXV 611065 . T A 2607 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.07;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2640,273,0 chrXV 611163 . C T 3918.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=15.1248;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=24.80;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3918,409,0 chrXV 611203 . G A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=15.5293;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=24.93;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3565,367,0 chrXV 611430 . T A 3796.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3259;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=21.94;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3796,400,0 chrXV 611434 . A G 3934.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=22.87;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3934,417,0 chrXV 611572 . A G 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.074;QD=23.44;ReadPosRankSum=1.711;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:1,162:167:99:3914,435,0 chrXV 611599 . T C 3751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=185;Dels=0.00;FS=5.863;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-1.475;QD=20.28;ReadPosRankSum=2.928;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:3,177:185:99:3751,393,0 chrXV 611617 . T C 4045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.169;DP=212;Dels=0.00;FS=5.243;HaplotypeScore=16.8566;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.852;QD=19.08;ReadPosRankSum=3.344;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:4,207:212:99:4045,430,0 chrXV 611672 . T C 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.064;DP=233;Dels=0.00;FS=7.434;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;MQRankSum=-2.148;QD=16.87;ReadPosRankSum=4.175;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:6,226:233:99:3930,429,0 chrXV 611686 . A G 4189.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=18.29;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4189,453,0 chrXV 611688 . A C 4185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=227;Dels=0.00;FS=4.695;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;MQRankSum=-0.679;QD=18.44;ReadPosRankSum=1.717;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4185,453,0 chrXV 611712 . A G 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=4.011;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=0;MQRankSum=-1.375;QD=14.17;ReadPosRankSum=1.715;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:2924,312,0 chrXV 611714 . C G 3085 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=0;QD=14.76;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:3118,330,0 chrXV 611752 . A G 3784.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.8185;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=19.71;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3784,414,0 chrXV 611842 . A G 4664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-1.525;QD=23.09;ReadPosRankSum=1.680;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4664,501,0 chrXV 611904 . A T 5638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=-0.792;QD=21.85;ReadPosRankSum=1.719;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:1,257:258:99:5638,598,0 chrXV 612123 . G A 4515.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.4275;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4515,475,0 chrXV 612614 . C G 1005 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.51;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1038,111,0 chrXV 612770 . T A 1637 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1670,174,0 chrXV 612840 . G A 1937 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1970,213,0 chrXV 612914 . C G 2368 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.92;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2401,252,0 chrXV 613096 . G A 3844.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.80;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3844,394,0 chrXV 614146 . G A 4152.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4152,433,0 chrXV 614212 . A G 4530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.061;HaplotypeScore=12.1732;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.737;QD=25.89;ReadPosRankSum=1.692;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4530,475,0 chrXV 614917 . A C 6082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=253;Dels=0.00;FS=4.634;HaplotypeScore=16.0418;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=1;MQRankSum=0.776;QD=24.04;ReadPosRankSum=1.690;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,249:252:99:6082,663,0 chrXV 614998 . C T 4409.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.61;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4409,471,0 chrXV 615019 . C T 4340.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.0868;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.49;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4340,454,0 chrXV 615172 . G A 5232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.752;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=9.0754;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=-0.215;QD=20.28;ReadPosRankSum=-1.410;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:1,257:258:99:5232,528,0 chrXV 615175 . A G 4836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.821;DP=238;Dels=0.00;FS=7.919;HaplotypeScore=4.1726;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.013;QD=20.32;ReadPosRankSum=3.768;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:5,233:238:99:4836,531,0 chrXV 615199 . G A 4605.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.46;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4605,478,0 chrXV 615307 . C T 4143.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.4945;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.81;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4143,430,0 chrXV 615643 . A G 4750.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4750,507,0 chrXV 616666 . T A 2829 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.93;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2862,300,0 chrXV 616760 . G A 3315.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=22.71;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3315,354,0 chrXV 616762 . C A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=22.13;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3275,351,0 chrXV 616818 . A T 2337 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=17.84;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2370,249,0 chrXV 616830 . T C 1903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;MQRankSum=0.091;QD=16.26;ReadPosRankSum=1.702;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,113:117:99:1936,207,0 chrXV 616831 . C T 1921 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=16.42;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1954,207,0 chrXV 616846 . C T 2290 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8431;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=18.47;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2323,234,0 chrXV 617266 . T A 2405 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.56;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2438,246,0 chrXV 617274 . T A 2559 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.68;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2592,267,0 chrXV 617336 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.72;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3160,330,0 chrXV 617676 . A G 2903 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.60;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2936,318,0 chrXV 617892 . A G 3166 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3199,342,0 chrXV 618586 . A G 3755.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.70;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3755,405,0 chrXV 618618 . G T 3077 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.67;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,136:142:99:3110,333,0 chrXV 618629 . T C 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=134;Dels=0.00;FS=4.674;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=1.155;QD=21.90;ReadPosRankSum=1.706;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2968,315,0 chrXV 618723 . G A 4110.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.2562;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=23.76;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4110,441,0 chrXV 618824 . G A 2654 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=25.52;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2687,273,0 chrXV 618863 . C T 2674 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=20.73;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2707,282,0 chrXV 618889 . G A 2591 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.69;MQ0=0;QD=17.87;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2624,273,0 chrXV 618890 . G A 2599 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.69;MQ0=0;QD=17.92;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2632,273,0 chrXV 618906 . T C 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.341;DP=163;Dels=0.00;FS=8.766;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;MQRankSum=-2.537;QD=15.23;ReadPosRankSum=3.406;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:4,159:163:99:2516,264,0 chrXV 618941 . G A 2485 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=42.66;MQ0=0;QD=14.04;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:2518,261,0 chrXV 618972 . A T 24.23 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.534;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=164.4499;MLEAC=1;MLEAF=0.500;MQ=43.93;MQ0=0;MQRankSum=-3.739;QD=0.13;ReadPosRankSum=-4.832;SB=-1.442e+02 GT:AD:DP:GQ:PL 0/1:181,9:190:10:54,0,10 chrXV 618973 . A T 22.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.682;DP=193;Dels=0.00;FS=1.396;HaplotypeScore=163.7159;MLEAC=1;MLEAF=0.500;MQ=44.23;MQ0=0;MQRankSum=2.228;QD=0.11;ReadPosRankSum=4.819;SB=-1.507e+03 GT:AD:DP:GQ:PL 0/1:9,184:193:29:52,0,29 chrXV 619031 . C G 5185.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=11.1944;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.28;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:5185,588,0 chrXV 619220 . G A 9474.01 filter AC=2;AF=1.00;AN=2;DP=390;Dels=0.00;FS=0.000;HaplotypeScore=16.6017;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=24.29;SB=-4.719e+03 GT:AD:DP:GQ:PL 1/1:0,390:390:99:9474,977,0 chrXV 619398 . A G 5920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.274;DP=290;Dels=0.00;FS=5.219;HaplotypeScore=20.6629;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=0.251;QD=20.41;ReadPosRankSum=3.407;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:4,284:290:99:5920,648,0 chrXV 619601 . A G 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.011;QD=23.60;ReadPosRankSum=1.710;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3729,399,0 chrXV 619636 . C T 3064 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=23.94;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3097,316,0 chrXV 619647 . T C 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=4.843;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.767;QD=22.59;ReadPosRankSum=1.704;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2811,303,0 chrXV 619861 . A G 2556 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.67;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2589,288,0 chrXV 620025 . A G 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=134;Dels=0.00;FS=6.059;HaplotypeScore=6.4691;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.356;QD=21.61;ReadPosRankSum=2.947;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:3,130:134:99:2929,321,0 chrXV 620154 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.9948;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:3006,315,0 chrXV 620334 . A G 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.007;QD=22.09;ReadPosRankSum=1.705;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2905,312,0 chrXV 620397 . T C 3765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=3.500;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.109;QD=24.93;ReadPosRankSum=1.709;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3765,405,0 chrXV 620433 . C T 3569.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3569,373,0 chrXV 620620 . G A 5124.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.3361;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.12;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5124,532,0 chrXV 620881 . A G 5256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=14.9385;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.616;QD=22.27;ReadPosRankSum=1.717;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:5256,562,0 chrXV 621951 . T C 3921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=185;Dels=0.00;FS=5.610;HaplotypeScore=8.8561;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.787;QD=21.19;ReadPosRankSum=2.962;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:3,181:185:99:3921,426,0 chrXV 621972 . A G 3845.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=194;Dels=0.00;FS=8.016;HaplotypeScore=8.3122;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-2.068;QD=19.82;ReadPosRankSum=2.386;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:3845,417,0 chrXV 622271 . G C 4624.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.73;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:4624,484,0 chrXV 622303 . C T 4479.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=26.35;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4479,460,0 chrXV 622413 . A G 4202.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.9146;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.88;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4202,445,0 chrXV 623349 . G C 3826.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3826,408,0 chrXV 623422 . C T 2795 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2828,294,0 chrXV 623562 . G A 2547 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.2534;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.58;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2580,276,0 chrXV 623604 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.46;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2567,267,0 chrXV 623860 . A G 4572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=189;Dels=0.00;FS=9.405;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.189;QD=24.19;ReadPosRankSum=2.423;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4572,490,0 chrXV 623880 . A T 4815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=204;Dels=0.00;FS=4.708;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.900;QD=23.60;ReadPosRankSum=1.681;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4815,502,0 chrXV 623925 . G A 4120.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.34;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,209:213:99:4120,438,0 chrXV 623931 . A T 4299.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.0826;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.00;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4299,457,0 chrXV 624091 . G A 5574.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=12.2499;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.30;SB=-3.278e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5574,571,0 chrXV 624279 . C T 3334.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.5718;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.97;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3334,345,0 chrXV 624391 . G T 1999 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.80;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2032,210,0 chrXV 624491 . T A 1041 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.13;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1074,111,0 chrXV 624522 . G A 793 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.82;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:826,87,0 chrXV 624582 . C T 788 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.21;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:84:821,84,0 chrXV 624626 . T A 1103 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.06;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1136,117,0 chrXV 624648 . T C 1031 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=20.62;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1064,114,0 chrXV 624930 . A G 4144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=4.924;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.513;QD=23.68;ReadPosRankSum=1.672;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4144,441,0 chrXV 625213 . A G 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.368;QD=21.54;ReadPosRankSum=1.689;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3446,360,0 chrXV 625559 . A C 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=-1.352;QD=23.13;ReadPosRankSum=1.711;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3816,414,0 chrXV 625581 . A G 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=147;Dels=0.00;FS=6.061;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;MQRankSum=-1.254;QD=21.31;ReadPosRankSum=2.788;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3166,336,0 chrXV 625595 . A G 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-0.247;QD=21.59;ReadPosRankSum=1.703;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2624,282,0 chrXV 625596 . C T 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=3.278;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=1.051;QD=22.33;ReadPosRankSum=-0.311;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2646,273,0 chrXV 625649 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.56;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2989,309,0 chrXV 626502 . G C 1541 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;QD=16.75;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,88:92:99:1574,177,0 chrXV 626508 . T G 1598 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.28;MQ0=0;QD=16.82;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1631,174,0 chrXV 626516 . A T 1464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=0;MQRankSum=-1.009;QD=16.09;ReadPosRankSum=1.694;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1497,153,0 chrXV 626519 . C T 1459 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.61;MQ0=0;QD=16.39;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1492,153,0 chrXV 626602 . C T 2014 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.55;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2047,213,0 chrXV 627315 . C T 4887.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4887,517,0 chrXV 627894 . T C 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=131;Dels=0.00;FS=6.535;HaplotypeScore=8.9606;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.854;QD=23.08;ReadPosRankSum=2.393;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3057,333,0 chrXV 628108 . A G 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=3.277;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.227;QD=26.09;ReadPosRankSum=1.709;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3965,412,0 chrXV 628209 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.03;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2836,291,0 chrXV 628280 . G A 4337.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.45;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4337,448,0 chrXV 628552 . C T 3772.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.0332;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.43;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3772,399,0 chrXV 628909 . A G 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=3.654;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.156;QD=23.92;ReadPosRankSum=1.711;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3995,417,0 chrXV 629011 . C T 4645.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.1012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4645,487,0 chrXV 630082 . A G 3523.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.80;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3523,372,0 chrXV 630687 . T C 1389 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1422,150,0 chrXV 630812 . A G 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.8357;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.325;QD=23.43;ReadPosRankSum=1.698;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2446,261,0 chrXV 630899 . C T 2566 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.21;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2599,267,0 chrXV 630972 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.93;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3635,381,0 chrXV 631072 . T G 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.700;DP=172;Dels=0.00;FS=2.310;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-1.103;QD=20.03;ReadPosRankSum=3.463;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:5,167:172:99:3446,369,0 chrXV 631073 . C A 3635.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=20.77;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3635,376,0 chrXV 631653 . T C 3795.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.3619;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.85;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3795,411,0 chrXV 631968 . T A 3836.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.59;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3836,400,0 chrXV 632289 . G A 3514.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=20.4195;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.57;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3514,364,0 chrXV 632436 . A G 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.954;QD=24.42;ReadPosRankSum=1.661;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3590,393,0 chrXV 632634 . C T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.87;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3390,360,0 chrXV 633453 . T C 5908.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=18.3457;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.90;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5908,613,0 chrXV 633727 . G A 3856.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.5452;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.10;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3856,397,0 chrXV 634307 . T C 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.919;QD=22.76;ReadPosRankSum=1.706;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3037,315,0 chrXV 634711 . T C 4119.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.4821;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.03;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4119,433,0 chrXV 634951 . A G 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.224;DP=113;Dels=0.00;FS=8.250;HaplotypeScore=9.3669;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.645;QD=21.60;ReadPosRankSum=3.302;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:4,109:113:99:2474,264,0 chrXV 635897 . C T 3999.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.69;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3999,415,0 chrXV 636791 . A G 1569 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.695;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=-1.279;QD=19.86;ReadPosRankSum=3.715;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,74:79:99:1602,174,0 chrXV 636833 . C A 592 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=23.68;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:66:625,66,0 chrXV 636908 . G A 1409 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.29;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1442,147,0 chrXV 638136 . T C 6537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=279;Dels=0.00;FS=9.365;HaplotypeScore=11.7639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.823;QD=23.43;ReadPosRankSum=2.946;SB=-3.463e+03 GT:AD:DP:GQ:PL 1/1:3,276:279:99:6537,712,0 chrXV 638499 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.40;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3032,315,0 chrXV 638526 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7342;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.51;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2699,279,0 chrXV 638603 . A G 3490.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.5045;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.58;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3490,372,0 chrXV 638733 . C T 1977 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=61.0336;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.49;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2010,207,0 chrXV 638980 . C T 6237.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=11.5357;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=25.99;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6237,678,0 chrXV 639214 . C T 6441.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=25.3742;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.47;SB=-3.718e+03 GT:AD:DP:GQ:PL 1/1:0,300:300:99:6441,673,0 chrXV 639299 . T C 5735.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.27;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,283:283:99:5735,604,0 chrXV 639307 . T C 5755.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.70;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:5755,607,0 chrXV 639391 . A T 3769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.6964;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.105;QD=20.82;ReadPosRankSum=1.713;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3769,411,0 chrXV 639610 . T G 3787.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.59;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3787,405,0 chrXV 639717 . A G 4352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=186;Dels=0.00;FS=4.543;HaplotypeScore=11.2647;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.009;QD=23.40;ReadPosRankSum=1.601;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4352,492,0 chrXV 639862 . T C 5723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=244;Dels=0.00;FS=2.812;HaplotypeScore=15.1333;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.107;QD=23.45;ReadPosRankSum=2.368;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:2,239:244:99:5723,598,0 chrXV 639978 . A G 6412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=263;Dels=0.00;FS=7.495;HaplotypeScore=12.7978;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.977;QD=24.38;ReadPosRankSum=2.412;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:2,258:263:99:6412,676,0 chrXV 640033 . A G 6900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=296;Dels=0.00;FS=10.834;HaplotypeScore=25.5517;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=2.248;QD=23.31;ReadPosRankSum=2.895;SB=-3.486e+03 GT:AD:DP:GQ:PL 1/1:3,292:296:99:6900,730,0 chrXV 640481 . A G 3625.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.39;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3625,384,0 chrXV 641229 . G A 2701 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=25.72;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2734,285,0 chrXV 641909 . G A 3759.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.8141;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=18.89;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3759,396,0 chrXV 642138 . T C 4091.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.3861;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.11;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4091,441,0 chrXV 642164 . A G 3903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.4885;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.791;QD=22.56;ReadPosRankSum=1.712;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3903,414,0 chrXV 642294 . G C 4336.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.69;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4336,465,0 chrXV 642380 . G A 4669.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.10;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4669,498,0 chrXV 642716 . G A 7907.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.59;SB=-4.252e+03 GT:AD:DP:GQ:PL 1/1:0,309:309:99:7907,808,0 chrXV 643206 . C T 3363.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.9459;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.87;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3363,343,0 chrXV 643314 . C G 2578 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.79;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2611,276,0 chrXV 643604 . G A 3784.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.06;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3784,394,0 chrXV 644459 . C G 4820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=200;Dels=0.00;FS=3.100;HaplotypeScore=9.8400;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;MQRankSum=1.573;QD=24.10;ReadPosRankSum=0.124;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:1,195:200:99:4820,508,0 chrXV 644578 . C T 6040.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.8116;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.38;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:6040,625,0 chrXV 645045 . C T 4291.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.4073;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.16;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4291,442,0 chrXV 649931 . C T 4012.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4012,421,0 chrXV 652443 . T A 3734.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3734,385,0 chrXV 653769 . G A 4236.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.77;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4236,430,0 chrXV 653924 . C T 5455.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.0362;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.80;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5455,562,0 chrXV 655136 . C T 3491.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.86;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3491,361,0 chrXV 655177 . T G 3398.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.74;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3398,363,0 chrXV 656264 . G C 5236.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=19.0088;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.13;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5236,562,0 chrXV 656567 . G A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.9234;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.06;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3408,355,0 chrXV 658744 . G A 5449.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=17.6736;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.00;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5449,586,0 chrXV 661306 . G A 5983.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=15.7640;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.35;SB=-3.059e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5983,625,0 chrXV 662272 . C A 4496.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.12;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4496,477,0 chrXV 662713 . C T 3062 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.68;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3095,327,0 chrXV 663812 . C T 1499 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1532,162,0 chrXV 664181 . G T 2244 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=22.44;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2277,234,0 chrXV 664211 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=21.12;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2441,261,0 chrXV 664318 . C T 1790 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;QD=18.65;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1823,195,0 chrXV 664333 . C T 1244 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.61;MQ0=0;QD=12.32;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1277,144,0 chrXV 664342 . T C 1243 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.28;MQ0=0;MQRankSum=-1.732;QD=12.31;ReadPosRankSum=1.698;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1276,141,0 chrXV 664345 . G A 1195 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=31.48;MQ0=0;QD=11.60;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1228,135,0 chrXV 664352 . A C 1168 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.6568;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;QD=10.92;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,104:107:99:1201,135,0 chrXV 664387 . A G 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=5.426;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;MQRankSum=-1.005;QD=17.48;ReadPosRankSum=1.708;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2533,270,0 chrXV 664421 . C G 2850 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;QD=16.86;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2883,309,0 chrXV 664440 . A G 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=6.173;HaplotypeScore=9.3707;MLEAC=2;MLEAF=1.00;MQ=44.63;MQ0=0;MQRankSum=-0.697;QD=16.81;ReadPosRankSum=1.712;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:2975,315,0 chrXV 664462 . T C 2081 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=0;QD=12.03;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2114,231,0 chrXV 664466 . A G 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=10.675;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=0;MQRankSum=-1.819;QD=11.24;ReadPosRankSum=2.418;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:1798,201,0 chrXV 664473 . T C 1735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.04;MQ0=0;MQRankSum=-1.936;QD=10.98;ReadPosRankSum=2.387;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:1768,192,0 chrXV 664509 . T C 2254 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;QD=14.83;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2287,255,0 chrXV 664533 . G A 2530 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.8675;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=0;QD=16.22;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2563,285,0 chrXV 664542 . A G 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=157;Dels=0.00;FS=3.123;HaplotypeScore=3.4380;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;MQRankSum=1.088;QD=17.21;ReadPosRankSum=1.688;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:2735,306,0 chrXV 664547 . G T 2852 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=18.17;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2885,312,0 chrXV 664629 . C T 4092.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=22.48;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4092,447,0 chrXV 664734 . G A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.5479;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=24.25;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3662,376,0 chrXV 664814 . T A 37.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=3.80;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:70,9,0 chrXV 664815 . G A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;QD=1.87;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:48,6,0 chrXV 669256 . C T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=25.23;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3406,351,0 chrXV 669350 . A G 3410.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=24.18;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3410,363,0 chrXV 669462 . A G 4178.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=23.87;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4178,439,0 chrXV 669465 . T A 4278.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=23.90;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4278,448,0 chrXV 669501 . A G 3760.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=21.86;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3760,396,0 chrXV 669523 . C T 3164 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.38;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3197,330,0 chrXV 669552 . C T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.37;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3255,348,0 chrXV 669720 . G A 2792 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=21.64;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2825,291,0 chrXV 669732 . C T 2907 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.07;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2940,306,0 chrXV 669828 . A G 3207 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=22.43;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3240,339,0 chrXV 669848 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=24.59;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3762,391,0 chrXV 669921 . G T 3476.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=25.19;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3476,360,0 chrXV 669951 . T G 2794 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.35;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2827,297,0 chrXV 670050 . G T 4468.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.2191;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=21.90;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4468,475,0 chrXV 670051 . C A 4433.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.2191;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.84;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4433,471,0 chrXV 670150 . A G 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=146;Dels=0.00;FS=3.255;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.759;QD=23.48;ReadPosRankSum=1.685;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3428,366,0 chrXV 670200 . C T 3506.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.01;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3506,366,0 chrXV 670894 . A T 3497.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.90;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3497,363,0 chrXV 670961 . T A 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.5418;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.453;QD=22.77;ReadPosRankSum=1.648;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2857,303,0 chrXV 672196 . C A 3750.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.5470;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3750,391,0 chrXV 675246 . T C 1903 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.93;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1936,207,0 chrXV 675258 . G A 1546 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.89;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1579,165,0 chrXV 675643 . A T 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-1.135;QD=25.56;ReadPosRankSum=1.692;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2257,234,0 chrXV 675665 . A T 2036 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.37;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2069,216,0 chrXV 675701 . T C 1743 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.81;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1776,189,0 chrXV 675894 . C G 2376 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.52;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2409,249,0 chrXV 676391 . A G 4606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=3.103;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=1.149;QD=24.12;ReadPosRankSum=1.641;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4606,487,0 chrXV 676406 . A G 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=1.066;QD=22.58;ReadPosRankSum=1.713;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4110,444,0 chrXV 676532 . C T 5122.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=14.3462;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.39;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5122,532,0 chrXV 676724 . C T 4944.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=21.1302;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.02;SB=-2.935e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:4944,523,0 chrXV 676760 . C T 6062.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=15.1064;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.35;SB=-3.677e+03 GT:AD:DP:GQ:PL 1/1:0,284:284:99:6062,631,0 chrXV 676799 . C T 7728.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.07;SB=-3.951e+03 GT:AD:DP:GQ:PL 1/1:0,335:335:99:7728,808,0 chrXV 676817 . A G 7602.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;DP=362;Dels=0.00;FS=15.311;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-1.645;QD=21.00;ReadPosRankSum=3.438;SB=-4.042e+03 GT:AD:DP:GQ:PL 1/1:4,356:362:99:7602,826,0 chrXV 677209 . T C 6914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=320;Dels=0.00;FS=3.014;HaplotypeScore=24.6548;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.638;QD=21.61;ReadPosRankSum=2.388;SB=-3.856e+03 GT:AD:DP:GQ:PL 1/1:2,316:320:99:6914,751,0 chrXV 677286 . G A 5729.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=21.3801;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.64;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5729,616,0 chrXV 677365 . C T 6769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=347;Dels=0.00;FS=0.000;HaplotypeScore=25.0861;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.632;QD=19.51;ReadPosRankSum=0.115;SB=-3.278e+03 GT:AD:DP:GQ:PL 1/1:1,346:347:99:6769,689,0 chrXV 677499 . G C 7651.01 filter AC=2;AF=1.00;AN=2;DP=372;Dels=0.00;FS=0.000;HaplotypeScore=33.1829;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.57;SB=-4.629e+03 GT:AD:DP:GQ:PL 1/1:0,367:372:99:7651,820,0 chrXV 677733 . C G 4877.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=18.8411;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.39;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4877,514,0 chrXV 677846 . T A 4278.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.88;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4278,448,0 chrXV 678027 . C G 1795 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=21.89;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1828,195,0 chrXV 678070 . A G 1803 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=21.21;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1836,198,0 chrXV 678086 . G C 1943 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=21.12;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1976,210,0 chrXV 678099 . A C 1684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=93;Dels=0.00;FS=4.292;HaplotypeScore=3.4217;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;MQRankSum=-1.031;QD=18.11;ReadPosRankSum=2.369;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1717,198,0 chrXV 678100 . C G 1756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=92;Dels=0.00;FS=4.250;HaplotypeScore=2.6331;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;MQRankSum=-1.150;QD=19.09;ReadPosRankSum=1.908;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1789,198,0 chrXV 678625 . A T 2771 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.68;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2804,291,0 chrXV 678705 . C T 3490.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=25.29;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3490,363,0 chrXV 678832 . T C 4230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.464;QD=25.18;ReadPosRankSum=1.711;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4230,462,0 chrXV 678936 . G A 5130.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=23.75;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5130,529,0 chrXV 679042 . C A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.21;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3575,373,0 chrXV 679088 . A G 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6964;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.742;QD=20.39;ReadPosRankSum=1.706;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2765,300,0 chrXV 679101 . C T 3078 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.63;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3111,319,0 chrXV 679386 . T C 3369.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.33;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3369,357,0 chrXV 679449 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4017;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.85;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3530,372,0 chrXV 679485 . T C 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-0.029;QD=21.33;ReadPosRankSum=1.656;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3861,406,0 chrXV 679488 . T C 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-1.320;QD=20.12;ReadPosRankSum=1.676;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:3762,399,0 chrXV 679794 . G A 4299.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.3367;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.71;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4299,448,0 chrXV 679983 . C T 5184.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.0235;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.57;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5184,544,0 chrXV 680430 . G A 3668.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.10;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:3668,396,0 chrXV 680491 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.83;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3262,336,0 chrXV 680797 . T C 2243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.719;DP=105;Dels=0.00;FS=9.681;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.291;QD=21.36;ReadPosRankSum=2.874;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:3,101:105:99:2276,243,0 chrXV 680922 . C T 1243 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.83;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1276,135,0 chrXV 680951 . T A 1281 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.66;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1314,138,0 chrXV 681208 . A G 902 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.00;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:935,99,0 chrXV 681389 . T C 103.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.103;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.788;QD=3.13;ReadPosRankSum=1.628;SB=-1.423e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:15:136,15,0 chrXV 681468 . A C 2024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.347;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.4554;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.647;QD=24.99;ReadPosRankSum=0.577;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:1,80:81:99:2057,194,0 chrXV 681705 . G A 4765.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.47;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4765,519,0 chrXV 682254 . G A 5055.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.1630;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=25.79;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:5055,526,0 chrXV 682318 . A T 3591.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.3395;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=23.32;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3591,384,0 chrXV 682766 . G C 5974.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=12.4224;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.63;SB=-3.416e+03 GT:AD:DP:GQ:PL 1/1:0,262:264:99:5974,654,0 chrXV 682961 . C T 5201.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=18.8831;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.42;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5201,570,0 chrXV 682981 . G T 4517.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.7585;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.40;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,189:193:99:4517,463,0 chrXV 683095 . G T 5524.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.8495;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=25.34;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5524,571,0 chrXV 683158 . G A 4878.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.02;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4878,505,0 chrXV 683189 . C A 5255.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.3453;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.26;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5255,541,0 chrXV 683295 . A G 4344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=6.9227;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.117;QD=19.48;ReadPosRankSum=1.670;SB=-2.956e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:4344,460,0 chrXV 683302 . G A 4286.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.66;SB=-2.952e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4286,448,0 chrXV 683351 . T C 4313.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.4189;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=19.78;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4313,459,0 chrXV 683410 . C T 4669.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.46;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4669,484,0 chrXV 683563 . G A 2743 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=23.05;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2776,285,0 chrXV 683694 . C T 2207 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=9.6388;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=19.19;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2240,237,0 chrXV 683698 . A C 2085 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=3.729;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;MQRankSum=-0.264;QD=17.67;ReadPosRankSum=1.703;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2118,228,0 chrXV 683704 . T A 2268 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=18.74;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2301,237,0 chrXV 683731 . C T 1964 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=17.85;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1997,204,0 chrXV 683759 . G T 1788 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=17.36;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1821,186,0 chrXV 683778 . T C 1774 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=16.74;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1807,189,0 chrXV 684078 . T C 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=139;Dels=0.00;FS=5.625;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=2.581;QD=23.76;ReadPosRankSum=2.831;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:3,134:139:99:3302,348,0 chrXV 684335 . A G 6283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=274;Dels=0.00;FS=3.717;HaplotypeScore=12.1651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.098;QD=22.93;ReadPosRankSum=1.681;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:1,272:274:99:6283,696,0 chrXV 684893 . C T 4087.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.09;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4087,447,0 chrXV 685474 . G A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.5588;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.49;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3288,345,0 chrXV 685558 . T A 3461.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.83;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3461,358,0 chrXV 685728 . A G 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=154;Dels=0.00;FS=3.594;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.952;QD=25.36;ReadPosRankSum=1.709;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3905,423,0 chrXV 686417 . T C 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.189;QD=24.18;ReadPosRankSum=1.674;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2935,318,0 chrXV 686985 . G A 2097 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2130,219,0 chrXV 687317 . A G 2823 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2856,306,0 chrXV 687739 . A G 4336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.5107;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.451;QD=24.92;ReadPosRankSum=1.652;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4336,463,0 chrXV 688425 . G A 4805.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=3.5726;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=18.84;SB=-3.315e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:4805,519,0 chrXV 688433 . T A 4668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.361;QD=19.05;ReadPosRankSum=1.690;SB=-3.160e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:4668,478,0 chrXV 688554 . T A 6176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=251;Dels=0.00;FS=2.970;HaplotypeScore=15.0210;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-2.078;QD=24.61;ReadPosRankSum=2.420;SB=-3.100e+03 GT:AD:DP:GQ:PL 1/1:2,249:251:99:6176,634,0 chrXV 688719 . T C 5727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=290;Dels=0.00;FS=9.107;HaplotypeScore=26.2431;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-0.316;QD=19.75;ReadPosRankSum=3.335;SB=-3.760e+03 GT:AD:DP:GQ:PL 1/1:4,285:290:99:5727,607,0 chrXV 688982 . T C 4622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=265;Dels=0.00;FS=4.990;HaplotypeScore=10.7966;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.098;QD=17.44;ReadPosRankSum=1.667;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:1,264:265:99:4622,507,0 chrXV 689078 . A G 4823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.848;QD=22.23;ReadPosRankSum=3.420;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:4,213:217:99:4823,519,0 chrXV 689217 . T C 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=3.896;HaplotypeScore=8.2500;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.992;QD=23.85;ReadPosRankSum=1.665;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2490,264,0 chrXV 689383 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3050,321,0 chrXV 689599 . A G 5072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=207;Dels=0.00;FS=7.220;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.924;QD=24.50;ReadPosRankSum=2.378;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:2,204:207:99:5072,541,0 chrXV 689641 . T C 5316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=18.2081;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.284;QD=23.42;ReadPosRankSum=1.717;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,223:227:99:5316,579,0 chrXV 690202 . C T 2858 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.64;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2891,300,0 chrXV 690359 . A G 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=132;Dels=0.00;FS=11.074;HaplotypeScore=12.9112;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.008;QD=20.85;ReadPosRankSum=2.947;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2785,297,0 chrXV 690477 . T C 2740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.241;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.119;QD=23.62;ReadPosRankSum=1.702;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2773,300,0 chrXV 691288 . A C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.641;QD=21.43;ReadPosRankSum=1.708;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:1,146:150:99:3248,357,0 chrXV 691480 . C T 4028.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.99;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4028,429,0 chrXV 691977 . T A 2417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=7.782;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.307;QD=21.20;ReadPosRankSum=1.641;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2450,252,0 chrXV 692038 . T C 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=8.107;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.196;QD=22.07;ReadPosRankSum=1.696;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2174,240,0 chrXV 692169 . A C 1175 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.92;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1208,132,0 chrXV 692189 . T C 1406 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.38;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1439,156,0 chrXV 692352 . A T 2807 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.99;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2840,294,0 chrXV 695150 . C T 5013.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5013,532,0 chrXV 695231 . A G 4132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=180;Dels=0.00;FS=6.293;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=-0.981;QD=22.96;ReadPosRankSum=2.381;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:4132,441,0 chrXV 695402 . G A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.95;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3489,363,0 chrXV 696549 . C G 3666.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.95;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,162:167:99:3666,384,0 chrXV 697431 . C T 3428.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.39;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3428,349,0 chrXV 697632 . C A 2612 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.36;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2645,270,0 chrXV 697884 . G C 3146 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.85;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,140:144:99:3179,345,0 chrXV 697906 . G A 3465.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.10;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3465,354,0 chrXV 698025 . T C 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.193;QD=23.94;ReadPosRankSum=1.704;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2954,309,0 chrXV 698268 . T C 2075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.715;QD=22.55;ReadPosRankSum=1.694;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2108,222,0 chrXV 698306 . T C 1486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=105;Dels=0.00;FS=5.620;HaplotypeScore=7.4972;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.461;QD=14.15;ReadPosRankSum=2.049;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:4,100:105:99:1519,168,0 chrXV 698579 . T G 4359.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.56;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4359,483,0 chrXV 698953 . C T 2070 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.10;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2103,216,0 chrXV 700514 . A G 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=120;Dels=0.00;FS=2.826;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.568;QD=23.75;ReadPosRankSum=2.408;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2883,315,0 chrXV 700968 . G A 4116.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.0967;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=24.07;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4116,444,0 chrXV 701028 . T C 4541.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.4790;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=23.41;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4541,481,0 chrXV 701042 . A G 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=1.073;QD=22.83;ReadPosRankSum=1.713;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4223,453,0 chrXV 701137 . C G 5488.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=5.8034;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.40;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5488,603,0 chrXV 701156 . T C 4948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=233;Dels=0.00;FS=7.124;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.282;QD=21.24;ReadPosRankSum=2.428;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:2,230:233:99:4948,546,0 chrXV 701208 . C T 4923.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=20.26;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:4923,511,0 chrXV 701218 . C A 4917.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=19.75;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,246:249:99:4917,511,0 chrXV 701256 . C T 5719.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=15.9772;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.08;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5719,604,0 chrXV 701365 . T A 6316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.967;DP=270;Dels=0.00;FS=5.788;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-0.394;QD=23.39;ReadPosRankSum=2.877;SB=-3.268e+03 GT:AD:DP:GQ:PL 1/1:3,267:270:99:6316,664,0 chrXV 701450 . A G 5644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=18.3054;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-1.142;QD=21.30;ReadPosRankSum=1.719;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:1,263:265:99:5644,618,0 chrXV 701551 . A G 6622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.770;DP=292;Dels=0.00;FS=5.723;HaplotypeScore=19.7981;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.179;QD=22.68;ReadPosRankSum=2.942;SB=-3.323e+03 GT:AD:DP:GQ:PL 1/1:3,289:292:99:6622,706,0 chrXV 701614 . G A 5489.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=12.8485;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.97;SB=-3.044e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5489,562,0 chrXV 701781 . G A 4495.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.6174;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.14;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4495,463,0 chrXV 701849 . G C 3679.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.1066;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.79;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,171:177:99:3679,387,0 chrXV 701869 . G A 3881.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.68;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3881,400,0 chrXV 702245 . T A 4279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=179;Dels=0.00;FS=8.577;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.118;QD=23.91;ReadPosRankSum=2.408;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4279,445,0 chrXV 702344 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.20;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3824,411,0 chrXV 702475 . T C 4355.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.7646;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.56;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4355,471,0 chrXV 702493 . C G 4352.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.09;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4352,480,0 chrXV 702546 . G T 4359.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.9732;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.31;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4359,448,0 chrXV 702764 . A C 3875.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.92;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3875,411,0 chrXV 703124 . C G 3797.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.88;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3797,408,0 chrXV 703622 . G A 613 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=19.77;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:69:646,69,0 chrXV 703627 . C A 524 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;QD=20.96;SB=-6.526e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:60:557,60,0 chrXV 703634 . C T 339 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.19;SB=-7.338e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:39:372,39,0 chrXV 703636 . C T 333 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.81;SB=-7.475e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:39:366,39,0 chrXV 703637 . T G 338 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.12;SB=-7.475e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:39:371,39,0 chrXV 703639 . A C 336 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.00;SB=-7.475e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:39:369,39,0 chrXV 703650 . C T 273 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.80;MQ0=0;QD=19.50;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:33:306,33,0 chrXV 710025 . G T 54.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.37;MQ0=4;QD=7.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,5:7:9:87,9,0 chrXV 710029 . T G 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.68;MQ0=3;QD=7.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,4:6:9:74,9,0 chrXV 710033 . T C 52.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.65;MQ0=1;QD=13.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,3:4:9:85,9,0 chrXV 710126 . G T 78.51 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;QD=1.78;SB=-2.752e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:12:111,12,0 chrXV 710606 . T A 3916.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.94;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3916,403,0 chrXV 711533 . G A 1418 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1451,153,0 chrXV 712214 . C G 4400.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4400,471,0 chrXV 712812 . A T 4162.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.1500;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.68;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4162,430,0 chrXV 713926 . T C 2931 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.3326;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.71;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2964,327,0 chrXV 716517 . C G 5496.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=14.3312;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.43;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,242:245:99:5496,600,0 chrXV 720426 . G A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.7102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3321,354,0 chrXV 720923 . A G 4775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.5275;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.243;QD=22.21;ReadPosRankSum=-0.291;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4775,511,0 chrXV 721121 . C T 6969.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=12.0109;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.80;SB=-3.235e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:6969,715,0 chrXV 721219 . G T 5266.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.32;SB=-2.996e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5266,538,0 chrXV 721240 . A T 5101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.706;QD=20.99;ReadPosRankSum=1.704;SB=-2.951e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:5101,523,0 chrXV 721322 . G A 6227.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.40;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:6227,661,0 chrXV 722742 . G A 4325.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.3126;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.18;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4325,462,0 chrXV 723226 . A C 4876.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=25.3382;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,234:237:99:4876,523,0 chrXV 724989 . A G 1306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.894;QD=21.06;ReadPosRankSum=1.676;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1339,141,0 chrXV 725113 . T C 1824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.138;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.077;QD=23.09;ReadPosRankSum=2.325;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1857,204,0 chrXV 725266 . T A 2643 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.3047;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.41;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2676,276,0 chrXV 726294 . A G 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.848;QD=22.42;ReadPosRankSum=1.714;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4305,468,0 chrXV 726893 . G A 2904 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2937,315,0 chrXV 727008 . G A 4817.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.0387;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.45;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4817,496,0 chrXV 729380 . A T 4833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=203;Dels=0.00;FS=3.032;HaplotypeScore=14.8810;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.393;QD=23.81;ReadPosRankSum=2.377;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4833,499,0 chrXV 730011 . C T 2918 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2951,303,0 chrXV 730479 . G A 7011.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=17.5071;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.60;SB=-3.608e+03 GT:AD:DP:GQ:PL 1/1:0,283:285:99:7011,721,0 chrXV 731742 . A T 4516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.221;QD=24.68;ReadPosRankSum=1.713;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4516,481,0 chrXV 732399 . C T 4551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.8335;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.461;QD=25.42;ReadPosRankSum=1.480;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4551,453,0 chrXV 732609 . A G 5095.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=23.70;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5095,561,0 chrXV 733519 . C T 2781 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.97;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2814,291,0 chrXV 733533 . T A 2378 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.82;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2411,252,0 chrXV 733608 . A G 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2870;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.411;QD=22.74;ReadPosRankSum=1.707;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3194,333,0 chrXV 733667 . C G 2917 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.6215;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.45;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2950,315,0 chrXV 733949 . C G 3595.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.19;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3595,384,0 chrXV 733953 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-0.855;QD=23.13;ReadPosRankSum=1.668;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3747,396,0 chrXV 734684 . C T 1786 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.1694;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.81;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1819,189,0 chrXV 735107 . T A 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.1230;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.634;QD=25.28;ReadPosRankSum=1.708;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3564,361,0 chrXV 735678 . T C 3178 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.92;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3211,339,0 chrXV 735873 . G A 3203 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.66;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3236,333,0 chrXV 735877 . G T 2996 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.24;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3029,309,0 chrXV 737281 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=178;Dels=0.00;FS=2.934;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.257;QD=22.78;ReadPosRankSum=2.422;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4054,429,0 chrXV 741440 . T C 4496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=1.260;QD=23.66;ReadPosRankSum=2.372;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4496,486,0 chrXV 741453 . C T 4515.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.2766;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.52;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4515,483,0 chrXV 747537 . A G 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=138;Dels=0.00;FS=7.880;HaplotypeScore=8.1175;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.381;QD=23.72;ReadPosRankSum=2.378;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3274,360,0 chrXV 748605 . T C 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.9606;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.850;QD=23.87;ReadPosRankSum=1.690;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3938,426,0 chrXV 748650 . C T 3593.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.78;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3593,370,0 chrXV 748655 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.72;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3377,366,0 chrXV 748737 . T G 4492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.130;QD=24.02;ReadPosRankSum=1.713;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4492,478,0 chrXV 751442 . G A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4035,429,0 chrXV 752064 . G A 1659 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.48;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1692,177,0 chrXV 757677 . C T 4968.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.6041;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.32;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4968,520,0 chrXV 757746 . A G 5083.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5083,535,0 chrXV 759034 . G A 5943.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.43;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:5943,640,0 chrXV 759061 . G A 6247.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=8.8678;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.40;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:6247,658,0 chrXV 759381 . A G 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.011;QD=21.80;ReadPosRankSum=2.404;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2387,255,0 chrXV 759410 . A G 2119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.347;QD=22.07;ReadPosRankSum=2.398;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2152,231,0 chrXV 760135 . T C 7123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=18.0737;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.574;QD=23.13;ReadPosRankSum=1.653;SB=-3.118e+03 GT:AD:DP:GQ:PL 1/1:1,305:308:99:7123,760,0 chrXV 760243 . G A 8245.01 PASS AC=2;AF=1.00;AN=2;DP=356;Dels=0.00;FS=0.000;HaplotypeScore=24.8789;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.16;SB=-4.902e+03 GT:AD:DP:GQ:PL 1/1:1,351:356:99:8245,847,0 chrXV 760376 . G A 6137.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.48;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:6137,637,0 chrXV 760787 . A G 1514 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1547,165,0 chrXV 761321 . C T 1738 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.21;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,97:101:99:1771,192,0 chrXV 762939 . A G 4472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=203;Dels=0.00;FS=3.029;HaplotypeScore=15.4904;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.409;QD=22.03;ReadPosRankSum=2.425;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:2,199:203:99:4472,498,0 chrXV 763226 . T A 4589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.760;DP=213;Dels=0.00;FS=12.376;HaplotypeScore=15.2856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.675;QD=21.54;ReadPosRankSum=2.863;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:3,210:213:99:4589,495,0 chrXV 763277 . G A 4815.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.3151;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4815,499,0 chrXV 763331 . T C 4594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=207;Dels=0.00;FS=6.608;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.939;QD=22.19;ReadPosRankSum=2.390;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4594,487,0 chrXV 763481 . T C 3728.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9046;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.16;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3728,396,0 chrXV 766564 . A G 2385 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1760;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.16;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2418,258,0 chrXV 766681 . G A 960 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.82;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:993,102,0 chrXV 766799 . G A 471 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.84;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,24:25:54:504,54,0 chrXV 766858 . C T 1774 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.99;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1807,192,0 chrXV 767198 . C G 3528.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.05;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3528,375,0 chrXV 767628 . A G 4456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=200;Dels=0.00;FS=2.732;HaplotypeScore=11.8058;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-2.005;QD=22.28;ReadPosRankSum=2.425;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:4456,472,0 chrXV 767736 . A C 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=169;Dels=0.00;FS=3.358;HaplotypeScore=13.3806;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.523;QD=22.96;ReadPosRankSum=1.712;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3881,423,0 chrXV 767955 . G A 3191 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.4023;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.58;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3224,331,0 chrXV 768716 . G A 2351 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=9.5254;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=8.77;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,264:268:99:2384,249,0 chrXV 770620 . C A 1076 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=232.2958;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=14.16;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1109,123,0 chrXV 770734 . A G 2031 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.89;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:2064,225,0 chrXV 776815 . C T 4565.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4565,469,0 chrXV 779669 . T C 2461 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.93;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2494,285,0 chrXV 779974 . G A 2087 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=26.09;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2120,222,0 chrXV 780071 . T C 1723 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.36;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1756,189,0 chrXV 780072 . C A 1799 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.44;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1832,195,0 chrXV 780180 . T C 2296 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=22.08;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2329,243,0 chrXV 780221 . C T 2446 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=23.08;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2479,258,0 chrXV 780235 . T A 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=4.325;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.515;QD=22.30;ReadPosRankSum=1.638;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2508,267,0 chrXV 780674 . G A 3546.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.2973;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.30;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3546,384,0 chrXV 780823 . G T 4779.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.5042;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.38;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4779,505,0 chrXV 780911 . T C 5343.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.85;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5343,582,0 chrXV 782167 . G T 4662.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.4673;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.19;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4662,496,0 chrXV 782474 . G C 4827.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,194:198:99:4827,508,0 chrXV 783922 . A G 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.029;QD=22.11;ReadPosRankSum=1.706;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2974,321,0 chrXV 784813 . C G 4077.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.78;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4077,447,0 chrXV 785050 . T C 4214.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.6840;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.53;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4214,450,0 chrXV 785112 . G A 3799.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;QD=18.35;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3799,394,0 chrXV 785138 . G C 3548.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;QD=16.20;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:3548,387,0 chrXV 785151 . A C 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=0;MQRankSum=-1.271;QD=13.89;ReadPosRankSum=1.716;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:3060,324,0 chrXV 785154 . T G 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=216;Dels=0.00;FS=7.829;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.25;MQ0=0;MQRankSum=-1.938;QD=14.01;ReadPosRankSum=2.415;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:3060,318,0 chrXV 785163 . G A 3052 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=41.60;MQ0=0;QD=14.26;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:3085,324,0 chrXV 785203 . A C 4526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.701;QD=19.85;ReadPosRankSum=1.686;SB=-3.049e+03 GT:AD:DP:GQ:PL 1/1:1,224:228:99:4526,472,0 chrXV 785252 . A G 5148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=3.386;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.360;QD=25.11;ReadPosRankSum=1.715;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:5148,541,0 chrXV 789434 . A G 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=150;Dels=0.00;FS=6.349;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.074;QD=22.52;ReadPosRankSum=2.400;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3378,357,0 chrXV 789595 . T C 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=148;Dels=0.00;FS=4.327;HaplotypeScore=16.7480;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=3.062;QD=22.97;ReadPosRankSum=3.489;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:5,142:148:99:3399,337,0 chrXV 789672 . A G 3755.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.49;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3755,408,0 chrXV 789977 . A G 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=4.516;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.732;QD=25.38;ReadPosRankSum=1.592;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2571,276,0 chrXV 790045 . G A 2405 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.29;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2438,252,0 chrXV 790680 . A C 4352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=187;Dels=0.00;FS=7.900;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.879;QD=23.27;ReadPosRankSum=2.369;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:2,181:187:99:4352,457,0 chrXV 791600 . A G 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.461;QD=26.26;ReadPosRankSum=1.702;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:3105,324,0 chrXV 794469 . T C 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.102;HaplotypeScore=18.7642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.587;QD=21.94;ReadPosRankSum=1.659;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3214,342,0 chrXV 794866 . T A 2690 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.53;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2723,279,0 chrXV 795030 . A G 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.2769;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.707;QD=22.03;ReadPosRankSum=1.656;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3073,330,0 chrXV 795300 . C T 4571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.3373;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.359;QD=23.44;ReadPosRankSum=1.608;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4571,466,0 chrXV 795362 . G A 5889.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=12.7698;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5889,628,0 chrXV 795596 . C T 2967 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.48;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3000,312,0 chrXV 795939 . G C 3846.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.81;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3846,417,0 chrXV 796340 . T G 5692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=304;Dels=0.00;FS=4.617;HaplotypeScore=17.6844;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.413;QD=18.72;ReadPosRankSum=1.698;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:1,303:304:99:5692,607,0 chrXV 796728 . T C 5204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=13.5423;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.534;QD=21.24;ReadPosRankSum=1.690;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5204,570,0 chrXV 796810 . G A 4407.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.37;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4407,474,0 chrXV 798206 . A T 6685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=13.3117;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.420;QD=22.28;ReadPosRankSum=1.709;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:1,299:300:99:6685,688,0 chrXV 798979 . A C 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=132;Dels=0.00;FS=3.358;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.373;QD=20.19;ReadPosRankSum=1.705;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2698,297,0 chrXV 799117 . C T 2828 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2861,291,0 chrXV 799328 . A G 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.208;QD=25.24;ReadPosRankSum=1.704;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3188,333,0 chrXV 800337 . A G 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.335;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.0183;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=2.368;QD=20.79;ReadPosRankSum=2.023;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2548,260,0 chrXV 802185 . C T 3766.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=24.14;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3766,391,0 chrXV 802360 . C T 2245 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=37.55;MQ0=0;QD=17.82;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2278,231,0 chrXV 802374 . T C 1831 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=125.6461;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=0;QD=16.65;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1864,195,0 chrXV 802722 . G C 4010.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=25.06;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4010,423,0 chrXV 802733 . G A 4016.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=24.64;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4016,415,0 chrXV 802913 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.6466;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.62;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3708,390,0 chrXV 804808 . T C 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=5.569;HaplotypeScore=11.9569;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.201;QD=22.95;ReadPosRankSum=0.822;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3200,339,0 chrXV 818089 . C T 5366.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.5218;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.55;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5366,559,0 chrXV 818506 . T C 3081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.226;DP=140;Dels=0.00;FS=17.582;HaplotypeScore=18.2351;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;MQRankSum=0.832;QD=22.01;ReadPosRankSum=4.236;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:7,133:140:99:3114,333,0 chrXV 818965 . C T 4390.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4390,454,0 chrXV 819020 . G T 4732.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.58;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4732,487,0 chrXV 819302 . T C 4349.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.1861;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.16;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4349,468,0 chrXV 819348 . C T 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.3749;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.055;QD=25.38;ReadPosRankSum=0.783;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:4010,421,0 chrXV 819402 . G A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.03;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4076,421,0 chrXV 819414 . G C 3925.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.57;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3925,409,0 chrXV 819520 . G A 5123.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.9514;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.17;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,208:212:99:5123,538,0 chrXV 820165 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.624;QD=25.07;ReadPosRankSum=2.378;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:3460,369,0 chrXV 820227 . C G 4907.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.6423;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.42;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4907,517,0 chrXV 820353 . C T 5832.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.27;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5832,598,0 chrXV 820399 . T C 6246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=246;Dels=0.00;FS=6.025;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.561;QD=25.39;ReadPosRankSum=2.947;SB=-3.164e+03 GT:AD:DP:GQ:PL 1/1:3,242:246:99:6246,670,0 chrXV 820504 . T C 3854.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.80;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3854,414,0 chrXV 820643 . A T 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=132;Dels=0.00;FS=2.582;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.519;QD=24.17;ReadPosRankSum=2.947;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:3224,333,0 chrXV 820854 . C G 1351 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=22.15;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1384,147,0 chrXV 820953 . A G 1619 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.13;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1652,180,0 chrXV 821142 . C T 3542.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=26.63;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3542,372,0 chrXV 821186 . C T 3025 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.6166;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=21.15;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3058,315,0 chrXV 821187 . G T 2882 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.8279;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.30;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2915,312,0 chrXV 821223 . C T 3708.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.94;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3708,385,0 chrXV 821660 . T C 4573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=3.330;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.748;QD=24.85;ReadPosRankSum=1.694;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4573,492,0 chrXV 821758 . A G 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=0.166;QD=23.54;ReadPosRankSum=2.354;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3649,387,0 chrXV 822154 . T C 2729 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=23.94;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2762,285,0 chrXV 822156 . G C 2688 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=23.58;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2721,288,0 chrXV 822171 . A G 2798 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.38;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2831,306,0 chrXV 822605 . C G 2220 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2253,240,0 chrXV 822681 . G T 2872 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=25.19;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2905,306,0 chrXV 822963 . T C 721.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.432;DP=294;Dels=0.00;FS=12.877;HaplotypeScore=38.4331;MLEAC=1;MLEAF=0.500;MQ=47.73;MQ0=0;MQRankSum=1.639;QD=2.45;ReadPosRankSum=-7.089;SB=-3.200e+02 GT:AD:DP:GQ:PL 0/1:209,85:294:99:751,0,2614 chrXV 822978 . T C 3821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.000;DP=277;Dels=0.00;FS=8.297;HaplotypeScore=8.6889;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;MQRankSum=3.942;QD=13.79;ReadPosRankSum=9.517;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:36,241:277:99:3821,328,0 chrXV 823408 . G A 2628 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.66;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2661,285,0 chrXV 823625 . C T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=26.28;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3785,394,0 chrXV 823902 . C T 4209.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.7920;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.88;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4209,433,0 chrXV 823938 . G A 4019.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.45;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4019,429,0 chrXV 823983 . A G 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.614;DP=170;Dels=0.00;FS=12.291;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.264;QD=20.84;ReadPosRankSum=3.781;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:5,164:170:99:3543,384,0 chrXV 824184 . G T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.04;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3364,354,0 chrXV 824279 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.749;QD=22.87;ReadPosRankSum=1.685;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3407,363,0 chrXV 824287 . A C 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.872;QD=22.63;ReadPosRankSum=1.687;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3463,363,0 chrXV 824472 . A G 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=118;Dels=0.00;FS=3.002;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.115;QD=22.92;ReadPosRankSum=2.366;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2738,291,0 chrXV 824520 . A G 3191 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.93;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3224,339,0 chrXV 824910 . G A 436 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=15.03;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:48:469,48,0 chrXV 824928 . T C 761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.087;QD=19.02;ReadPosRankSum=1.646;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:84:794,84,0 chrXV 825198 . G A 2886 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.77;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2919,318,0 chrXV 825345 . A G 5342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=5.567;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.506;QD=25.56;ReadPosRankSum=1.699;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:5342,562,0 chrXV 826024 . C T 2546 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.87;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2579,282,0 chrXV 826032 . A G 2289 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=128;Dels=0.00;FS=3.460;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=0.767;QD=17.88;ReadPosRankSum=1.675;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,121:128:99:2322,258,0 chrXV 826034 . C T 2375 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.85;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2408,255,0 chrXV 826120 . T C 4751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.209;QD=24.87;ReadPosRankSum=1.696;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4751,516,0 chrXV 826212 . A T 5292.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.8841;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.39;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5292,547,0 chrXV 826325 . G A 5144.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=14.7255;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.37;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5144,535,0 chrXV 827016 . A T 3946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.175;DP=179;Dels=0.00;FS=6.496;HaplotypeScore=18.5439;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-2.312;QD=22.04;ReadPosRankSum=2.381;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3946,409,0 chrXV 827048 . A G 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=184;Dels=0.00;FS=6.239;HaplotypeScore=12.2250;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.073;QD=22.02;ReadPosRankSum=2.328;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:2,180:184:99:4052,429,0 chrXV 827194 . A T 5281.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.7121;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.45;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5281,553,0 chrXV 827284 . T A 4272.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.2933;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.14;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4272,456,0 chrXV 827386 . G A 4723.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.08;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4723,493,0 chrXV 828050 . A G 4960.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4960,526,0 chrXV 828529 . T C 4034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=201;Dels=0.00;FS=3.010;HaplotypeScore=5.7889;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.572;QD=20.07;ReadPosRankSum=1.697;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4034,438,0 chrXV 828544 . A T 3916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=196;Dels=0.00;FS=2.987;HaplotypeScore=5.6752;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-1.084;QD=19.98;ReadPosRankSum=2.374;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:3916,412,0 chrXV 828571 . C T 3585.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.7204;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=18.87;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3585,384,0 chrXV 828658 . C G 4394.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.6136;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.01;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,185:191:99:4394,468,0 chrXV 828897 . G A 4127.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.16;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4127,427,0 chrXV 828922 . A G 3934.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.43;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3934,417,0 chrXV 829039 . A G 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.010;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.039;QD=25.40;ReadPosRankSum=1.709;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3836,411,0 chrXV 829111 . A G 4415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.633;QD=25.09;ReadPosRankSum=1.692;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4415,474,0 chrXV 829210 . G A 4221.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.26;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4221,439,0 chrXV 829348 . T C 4902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.643;QD=24.88;ReadPosRankSum=1.697;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4902,528,0 chrXV 829528 . C T 4255.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.43;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4255,456,0 chrXV 829621 . C G 5085.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=19.8607;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.40;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:5085,546,0 chrXV 830314 . G A 3722.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.89;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3722,402,0 chrXV 830744 . T A 1899 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1932,204,0 chrXV 830783 . C A 1259 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.71;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1292,135,0 chrXV 830933 . A G 866 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:96:899,96,0 chrXV 830980 . T C 551 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.77;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,28:31:63:584,63,0 chrXV 831051 . C T 1794 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1827,189,0 chrXV 831980 . A G 6405.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=9.9112;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.96;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:99:6405,679,0 chrXV 832089 . A C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=173;Dels=0.00;FS=5.845;HaplotypeScore=155.4353;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=0.632;QD=0.11;ReadPosRankSum=2.866;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:6:50,6,0 chrXV 832222 . G T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.8756;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.51;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3399,349,0 chrXV 832277 . G A 3937.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=18.8681;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.57;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3937,403,0 chrXV 832328 . A G 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=3.170;HaplotypeScore=4.3762;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.563;QD=22.53;ReadPosRankSum=1.711;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3740,396,0 chrXV 832576 . G A 3840.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.26;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3840,397,0 chrXV 832664 . T A 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.188;DP=94;Dels=0.00;FS=2.730;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.507;QD=22.13;ReadPosRankSum=2.266;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2113,219,0 chrXV 832805 . A G 4247.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=24.84;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4247,448,0 chrXV 832871 . T C 3474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=153;Dels=0.00;FS=2.978;HaplotypeScore=9.0648;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-2.062;QD=22.71;ReadPosRankSum=2.320;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3474,378,0 chrXV 833004 . A G 4379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=195;Dels=0.00;FS=6.948;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.019;QD=22.46;ReadPosRankSum=2.373;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4379,471,0 chrXV 833028 . G A 4700.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.8470;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.38;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4700,510,0 chrXV 833065 . G T 4775.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.90;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4775,496,0 chrXV 833083 . A G 4463.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.9255;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.25;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4463,477,0 chrXV 833338 . G A 5921.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=17.7283;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.78;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:5921,637,0 chrXV 833472 . A G 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.879;DP=212;Dels=0.00;FS=10.792;HaplotypeScore=18.9283;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.922;QD=21.13;ReadPosRankSum=4.115;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:6,206:212:99:4480,492,0 chrXV 833904 . C T 7506.01 PASS AC=2;AF=1.00;AN=2;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.95;SB=-3.963e+03 GT:AD:DP:GQ:PL 1/1:0,327:327:99:7506,802,0 chrXV 834436 . C T 3989.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4985;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.09;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3989,417,0 chrXV 834662 . G A 5553.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=15.2776;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.33;SB=-2.963e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5553,571,0 chrXV 834738 . C T 6797.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=31.8064;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.00;SB=-4.010e+03 GT:AD:DP:GQ:PL 1/1:0,308:309:99:6797,709,0 chrXV 834976 . C T 5102.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.5184;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.18;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:5102,547,0 chrXV 835187 . T C 3474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=145;Dels=0.00;FS=2.818;HaplotypeScore=11.3999;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.415;QD=23.96;ReadPosRankSum=2.416;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3474,369,0 chrXV 835445 . T G 3765.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.98;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3765,396,0 chrXV 836243 . C T 3114 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=19.10;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3147,342,0 chrXV 836249 . C A 3048 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.93;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3081,345,0 chrXV 836272 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=17.84;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2887,303,0 chrXV 836294 . T C 2387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-1.335;QD=15.20;ReadPosRankSum=1.666;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2420,267,0 chrXV 836747 . A C 4464.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.78;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4464,492,0 chrXV 837032 . G T 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.462;DP=147;Dels=0.00;FS=126.970;HaplotypeScore=16.4277;MLEAC=1;MLEAF=0.500;MQ=57.85;MQ0=0;MQRankSum=0.115;QD=0.10;ReadPosRankSum=-6.050;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,25:147:44:44,0,1971 chrXV 837056 . A G 2842 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.53;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2875,309,0 chrXV 837126 . G A 3279.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=18.0737;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.86;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3279,340,0 chrXV 837247 . G A 3634.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.13;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3634,376,0 chrXV 837632 . A C 2924 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.97;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2957,312,0 chrXV 837685 . A G 2282 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.6469;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.05;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2315,246,0 chrXV 838118 . A G 4357.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=17.5908;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.42;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4357,466,0 chrXV 838234 . C T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.7227;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.00;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3768,396,0 chrXV 838573 . C T 5961.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=11.7677;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.53;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5961,642,0 chrXV 838603 . C T 6027.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=17.6634;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.82;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:6027,649,0 chrXV 838724 . A G 5723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=239;Dels=0.00;FS=3.084;HaplotypeScore=8.2186;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.121;QD=23.95;ReadPosRankSum=1.703;SB=-3.145e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:5723,613,0 chrXV 839046 . A T 2986 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.48;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3019,315,0 chrXV 839325 . C T 2498 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3071;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.50;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2531,261,0 chrXV 839346 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.52;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2618,270,0 chrXV 839433 . C T 3118 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.17;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3151,324,0 chrXV 839583 . G T 3019 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=25.58;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3052,315,0 chrXV 839947 . A T 4484.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=24.24;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4484,475,0 chrXV 840149 . C T 4348.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.1463;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=24.16;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4348,454,0 chrXV 840167 . A G 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.722;DP=166;Dels=0.00;FS=7.732;HaplotypeScore=3.9360;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.453;QD=22.04;ReadPosRankSum=3.666;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:5,161:166:99:3658,384,0 chrXV 840176 . T C 3608.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.4987;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=21.35;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3608,381,0 chrXV 840302 . A G 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=195;Dels=0.00;FS=3.032;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.749;QD=19.86;ReadPosRankSum=2.424;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:3872,420,0 chrXV 840306 . T C 3922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.411;QD=20.11;ReadPosRankSum=1.714;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:3922,417,0 chrXV 840781 . T A 3285.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.81;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3285,345,0 chrXV 840881 . C T 4424.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.85;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4424,466,0 chrXV 840926 . G A 4288.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.4675;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.93;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4288,465,0 chrXV 841211 . A G 4331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.316;QD=24.75;ReadPosRankSum=1.673;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4331,454,0 chrXV 841378 . T G 5290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.520;QD=24.95;ReadPosRankSum=1.716;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:5290,579,0 chrXV 841710 . T C 2890 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.27;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2923,312,0 chrXV 841912 . G T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.99;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3335,351,0 chrXV 841930 . A C 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=4.640;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-0.606;QD=24.92;ReadPosRankSum=1.711;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4062,438,0 chrXV 842069 . A G 2490 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.47;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2523,267,0 chrXV 842085 . C T 2880 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=18.95;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2913,303,0 chrXV 842107 . C T 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=156;Dels=0.00;FS=3.802;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-0.533;QD=17.65;ReadPosRankSum=1.688;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2786,284,0 chrXV 842131 . T C 2882 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;QD=15.66;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:2915,315,0 chrXV 842137 . C A 3052 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=16.50;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3085,324,0 chrXV 842183 . A C 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=173;Dels=0.00;FS=2.699;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-0.094;QD=19.33;ReadPosRankSum=2.320;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:2,168:173:99:3344,357,0 chrXV 842270 . C G 4022.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=24.38;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4022,432,0 chrXV 842383 . T C 3172 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=23.85;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3205,342,0 chrXV 842666 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.8569;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3819,426,0 chrXV 842829 . A C 3654.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3654,393,0 chrXV 843225 . A T 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.843;QD=23.96;ReadPosRankSum=1.662;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3546,364,0 chrXV 843892 . A G 4913.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.94;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4913,514,0 chrXV 843952 . C T 4489.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.7318;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.56;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4489,466,0 chrXV 844406 . G A 2313 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2346,249,0 chrXV 844466 . T A 1511 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1544,162,0 chrXV 844759 . C T 1138 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.10;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1171,117,0 chrXV 845199 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.1496;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2999,318,0 chrXV 845250 . T C 3717.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.7511;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.53;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3717,399,0 chrXV 845796 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.059;DP=152;Dels=0.00;FS=3.039;HaplotypeScore=15.6388;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.229;QD=22.72;ReadPosRankSum=2.417;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3453,369,0 chrXV 845995 . C T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.64;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3794,385,0 chrXV 846027 . G A 3322.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.17;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3322,343,0 chrXV 846081 . A G 2788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.1721;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.760;QD=24.46;ReadPosRankSum=1.641;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2821,300,0 chrXV 846110 . A C 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.341;QD=22.31;ReadPosRankSum=1.706;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3000,321,0 chrXV 846148 . A G 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.030;QD=21.51;ReadPosRankSum=1.702;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2528,270,0 chrXV 846446 . T C 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.0595;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.401;QD=21.34;ReadPosRankSum=1.707;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2935,321,0 chrXV 846491 . C T 3009 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.80;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,133:138:99:3042,312,0 chrXV 846521 . C T 3337.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.01;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3337,346,0 chrXV 846548 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.70;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3981,412,0 chrXV 846599 . T G 3636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.2288;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.283;QD=22.44;ReadPosRankSum=-1.219;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3636,393,0 chrXV 846676 . T C 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.184;DP=151;Dels=0.00;FS=2.975;HaplotypeScore=17.2274;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.091;QD=22.30;ReadPosRankSum=2.300;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:2,146:151:99:3367,363,0 chrXV 846731 . G C 3481.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.36;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3481,375,0 chrXV 846763 . C T 3697.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.25;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3697,399,0 chrXV 847171 . C T 5404.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=10.6707;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.90;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5404,565,0 chrXV 847382 . A C 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=157;Dels=0.00;FS=4.716;HaplotypeScore=8.8807;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.232;QD=24.97;ReadPosRankSum=1.710;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3920,417,0 chrXV 847716 . A G 4253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.325;DP=181;Dels=0.00;FS=9.079;HaplotypeScore=13.9261;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.352;QD=23.50;ReadPosRankSum=3.411;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:4,177:181:99:4253,453,0 chrXV 847833 . C T 3847.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.4218;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.32;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3847,397,0 chrXV 848614 . G A 4209.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=24.33;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4209,442,0 chrXV 848635 . G C 4268.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=23.20;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4268,456,0 chrXV 848658 . C T 4249.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=24.28;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4249,436,0 chrXV 848780 . G C 3370.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.71;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3370,357,0 chrXV 848890 . T G 3984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=163;Dels=0.00;FS=3.230;HaplotypeScore=15.0237;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.192;QD=24.44;ReadPosRankSum=1.689;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3984,420,0 chrXV 848963 . C T 5279.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.26;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:5279,547,0 chrXV 849243 . T C 4963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=203;Dels=0.00;FS=11.524;HaplotypeScore=12.2764;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.597;QD=24.45;ReadPosRankSum=2.965;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:3,199:203:99:4963,523,0 chrXV 849407 . C T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.5123;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.88;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3320,345,0 chrXV 849538 . G A 2639 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.44;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2672,273,0 chrXV 849621 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=25.66;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3189,328,0 chrXV 849841 . T C 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=157;Dels=0.00;FS=6.100;HaplotypeScore=7.1115;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.647;QD=16.46;ReadPosRankSum=2.840;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:2618,285,0 chrXV 849847 . A G 2725 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=17.14;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2758,303,0 chrXV 850123 . A G 4344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.8387;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.407;QD=22.39;ReadPosRankSum=1.714;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:4344,474,0 chrXV 850266 . G C 3639.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.92;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,160:166:99:3639,390,0 chrXV 850435 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=139;Dels=0.00;FS=2.675;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.097;QD=23.23;ReadPosRankSum=1.353;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3261,357,0 chrXV 850811 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.8404;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=19.54;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3100,315,0 chrXV 850889 . A T 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=111;Dels=0.01;FS=6.221;HaplotypeScore=10.7184;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.510;QD=20.08;ReadPosRankSum=2.360;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2262,234,0 chrXV 851249 . T A 2432 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=19.93;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2465,261,0 chrXV 851254 . G C 2544 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.72;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2577,276,0 chrXV 851261 . C T 2674 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.11;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2707,279,0 chrXV 851396 . C T 3951.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=18.7888;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.52;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3951,412,0 chrXV 851461 . C T 4157.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.2360;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.60;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4157,424,0 chrXV 851557 . G T 4335.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.0153;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.01;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4335,451,0 chrXV 851570 . C G 4126.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.53;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:4126,453,0 chrXV 851662 . C T 4071.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.6996;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.62;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4071,418,0 chrXV 852451 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2782,300,0 chrXV 852538 . C T 3445.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.4905;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3445,366,0 chrXV 853369 . C A 3227.04 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.61;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3260,334,0 chrXV 854622 . C A 126.13 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.28;MQ0=0;QD=4.50;SB=-1.691e+02 GT:AD:DP:GQ:PL 1/1:0,26:28:18:159,18,0 chrXV 854667 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=22.95;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1731,174,0 chrXV 854717 . C T 2638 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=23.35;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2671,282,0 chrXV 854873 . A G 732 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=25.24;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:78:765,78,0 chrXV 854883 . C T 870 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.251;QD=24.17;ReadPosRankSum=0.578;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,35:36:93:903,93,0 chrXV 854955 . T C 506 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:57:539,57,0 chrXV 855037 . A G 741 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:84:774,84,0 chrXV 855289 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.62;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3685,382,0 chrXV 855747 . T C 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=157;Dels=0.00;FS=12.151;HaplotypeScore=11.1099;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.968;QD=15.90;ReadPosRankSum=2.916;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:2530,285,0 chrXV 856028 . C T 4863.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4863,508,0 chrXV 856254 . G A 5012.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.9292;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.68;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5012,537,0 chrXV 856383 . T G 4519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.4974;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=-0.023;QD=19.73;ReadPosRankSum=1.686;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:1,226:229:99:4519,501,0 chrXV 857553 . C T 4300.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.5792;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.00;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4300,445,0 chrXV 858511 . T C 4796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=194;Dels=0.00;FS=3.007;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-0.694;QD=24.72;ReadPosRankSum=2.411;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4796,508,0 chrXV 858879 . A T 5803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=15.4028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.769;QD=22.41;ReadPosRankSum=1.665;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:1,258:259:99:5803,592,0 chrXV 859245 . A G 4935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=17.1806;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.324;QD=23.06;ReadPosRankSum=1.700;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4935,528,0 chrXV 859338 . T G 4027.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.8945;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.22;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4027,441,0 chrXV 859706 . A G 5826.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=9.7974;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.68;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5826,625,0 chrXV 859857 . T C 4661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.6840;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=1.086;QD=24.03;ReadPosRankSum=1.714;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4661,507,0 chrXV 860178 . G A 5297.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.30;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5297,550,0 chrXV 860275 . A G 4250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.871;QD=22.97;ReadPosRankSum=1.713;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4250,451,0 chrXV 860337 . T A 3901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=161;Dels=0.00;FS=9.543;HaplotypeScore=10.1941;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=1.778;QD=24.23;ReadPosRankSum=2.419;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3901,403,0 chrXV 860397 . A G 3814.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.9920;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=22.17;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3814,426,0 chrXV 860535 . A G 3037 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=24.10;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3070,330,0 chrXV 860578 . T C 2584 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=103.4964;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=22.09;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2617,279,0 chrXV 860596 . C T 2260 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=20.00;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2293,237,0 chrXV 860613 . A C 2035 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=18.33;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2068,219,0 chrXV 860651 . T G 1589 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=17.27;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1622,177,0 chrXV 860684 . T C 1490 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.8671;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=17.95;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1523,159,0 chrXV 860762 . C A 1283 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1316,135,0 chrXV 861103 . A G 1049 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.98;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1082,120,0 chrXV 861110 . A G 1181 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.87;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1214,129,0 chrXV 861195 . C T 3176 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3398;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3209,336,0 chrXV 861653 . T C 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=143;Dels=0.00;FS=6.629;HaplotypeScore=15.9091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.689;QD=21.51;ReadPosRankSum=2.415;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:3109,336,0 chrXV 862092 . G A 4264.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.51;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4264,439,0 chrXV 862212 . C G 4081.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.42;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4081,435,0 chrXV 862224 . A T 4037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=183;Dels=0.00;FS=8.262;HaplotypeScore=7.3285;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-2.007;QD=22.06;ReadPosRankSum=2.329;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4037,415,0 chrXV 862275 . T C 3540.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.46;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3540,387,0 chrXV 862485 . C G 2664 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.48;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2697,288,0 chrXV 862815 . G C 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.098;DP=154;Dels=0.00;FS=4.945;HaplotypeScore=9.2622;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.487;QD=24.20;ReadPosRankSum=-1.143;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3727,382,0 chrXV 863103 . T C 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=139;Dels=0.00;FS=3.617;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.954;QD=22.76;ReadPosRankSum=1.682;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3197,351,0 chrXV 863148 . C T 4069.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.75;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4069,427,0 chrXV 863403 . G A 4047.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.38;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:4047,424,0 chrXV 863724 . A G 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=148;Dels=0.00;FS=2.951;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.828;QD=23.20;ReadPosRankSum=2.349;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3434,366,0 chrXV 863813 . G A 3055 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3088,321,0 chrXV 863988 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3244,348,0 chrXV 864150 . T C 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.085;DP=131;Dels=0.00;FS=7.205;HaplotypeScore=6.4627;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.769;QD=22.58;ReadPosRankSum=1.807;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2991,300,0 chrXV 864240 . A G 2979 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3012,327,0 chrXV 864445 . A G 5142.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5142,549,0 chrXV 864477 . A C 4691.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.7176;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.88;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4691,501,0 chrXV 864723 . G A 5104.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.4416;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.02;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5104,526,0 chrXV 865020 . G A 5577.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5577,580,0 chrXV 865788 . A G 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=79;Dels=0.00;FS=3.869;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.933;QD=24.22;ReadPosRankSum=1.643;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1946,207,0 chrXV 867542 . A G 4167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=167;Dels=0.00;FS=7.412;HaplotypeScore=15.4859;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.052;QD=24.95;ReadPosRankSum=2.420;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4167,442,0 chrXV 868325 . T C 3270.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.40;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3270,351,0 chrXV 868361 . A G 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=173;Dels=0.00;FS=6.569;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.250;QD=24.55;ReadPosRankSum=2.421;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:4248,450,0 chrXV 868926 . G T 1707 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1740,183,0 chrXV 869837 . T C 2774 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.12;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2807,300,0 chrXV 870679 . A G 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=130;Dels=0.00;FS=3.035;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.974;QD=23.34;ReadPosRankSum=2.393;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3067,327,0 chrXV 870871 . T A 2196 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.3270;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.77;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2229,234,0 chrXV 871515 . G A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.84;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3358,360,0 chrXV 873866 . T C 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.723;QD=24.65;ReadPosRankSum=1.650;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3163,339,0 chrXV 874326 . C A 2142 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.34;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2175,228,0 chrXV 874378 . T A 2198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-1.691;QD=25.86;ReadPosRankSum=1.691;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2231,228,0 chrXV 874406 . T C 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.189;DP=85;Dels=0.00;FS=3.057;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.855;QD=24.47;ReadPosRankSum=2.305;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,83:85:99:2113,209,0 chrXV 874666 . T C 2749 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.77;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2782,300,0 chrXV 875332 . A T 3788.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.10;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3788,405,0 chrXV 875886 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2787,297,0 chrXV 876366 . G C 1479 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1512,168,0 chrXV 878632 . C A 4646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.985;DP=208;Dels=0.00;FS=16.259;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.094;QD=22.34;ReadPosRankSum=1.926;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:7,200:208:99:4646,473,0 chrXV 879343 . T A 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.885;QD=21.46;ReadPosRankSum=1.707;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3038,330,0 chrXV 879406 . C T 3683.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.72;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3683,384,0 chrXV 880027 . G A 6640.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=4.3328;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.90;SB=-3.969e+03 GT:AD:DP:GQ:PL 1/1:0,285:290:99:6640,685,0 chrXV 880049 . T C 7138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=323;Dels=0.00;FS=2.978;HaplotypeScore=16.1155;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.279;QD=22.10;ReadPosRankSum=2.388;SB=-4.007e+03 GT:AD:DP:GQ:PL 1/1:2,319:323:99:7138,763,0 chrXV 880507 . A C 4262.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4262,453,0 chrXV 880789 . C T 3178 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=21.92;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3211,342,0 chrXV 881856 . A G 9288.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=423;Dels=0.00;FS=11.244;HaplotypeScore=19.5187;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.526;QD=21.96;ReadPosRankSum=2.391;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:2,420:423:99:9288,1038,0 chrXV 882045 . C A 12942.01 filter AC=2;AF=1.00;AN=2;DP=561;Dels=0.00;FS=0.000;HaplotypeScore=14.9112;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.07;SB=-6.523e+03 GT:AD:DP:GQ:PL 1/1:0,561:561:99:12942,1352,0 chrXV 882091 . A G 9835.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.378;DP=436;Dels=0.00;FS=5.020;HaplotypeScore=22.5413;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.875;QD=22.56;ReadPosRankSum=3.406;SB=-3.862e+03 GT:AD:DP:GQ:PL 1/1:4,432:436:99:9835,1039,0 chrXV 882834 . T A 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.230;QD=23.57;ReadPosRankSum=2.407;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2744,285,0 chrXV 882911 . G C 3501.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.83;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3501,369,0 chrXV 883315 . T C 6302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=272;Dels=0.00;FS=2.912;HaplotypeScore=31.0969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.977;QD=23.17;ReadPosRankSum=2.422;SB=-3.019e+03 GT:AD:DP:GQ:PL 1/1:2,268:272:99:6302,682,0 chrXV 883372 . C T 8068.01 PASS AC=2;AF=1.00;AN=2;DP=352;Dels=0.00;FS=0.000;HaplotypeScore=21.2113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-4.333e+03 GT:AD:DP:GQ:PL 1/1:0,351:352:99:8068,859,0 chrXV 883966 . C T 4449.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.05;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4449,466,0 chrXV 884571 . C G 3198 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=24.41;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3231,342,0 chrXV 884596 . T C 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=156;Dels=0.00;FS=5.999;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=1.032;QD=19.58;ReadPosRankSum=2.800;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3087,336,0 chrXV 884597 . C T 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.382;QD=20.15;ReadPosRankSum=1.597;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3177,339,0 chrXV 885215 . A T 3872.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2788;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.16;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3872,400,0 chrXV 885437 . T C 2636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=4.735;HaplotypeScore=9.4851;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.587;QD=22.15;ReadPosRankSum=1.703;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2669,285,0 chrXV 885669 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=26.09;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3496,369,0 chrXV 885692 . A G 3156 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.54;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3189,345,0 chrXV 885911 . T C 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=188;Dels=0.00;FS=6.331;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.310;QD=20.73;ReadPosRankSum=2.344;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:3898,403,0 chrXV 885914 . A G 3812.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.75;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3812,417,0 chrXV 886853 . C T 4498.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.6566;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=25.27;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4498,466,0 chrXV 887066 . C T 4478.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.7901;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.39;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4478,460,0 chrXV 887264 . T C 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=140;Dels=0.00;FS=3.827;HaplotypeScore=7.9128;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.148;QD=23.96;ReadPosRankSum=1.707;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3355,366,0 chrXV 887295 . G A 2919 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.17;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2952,309,0 chrXV 887669 . A G 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=142;Dels=0.01;FS=6.898;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.375;QD=24.19;ReadPosRankSum=2.415;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3435,369,0 chrXV 888126 . A G 2920 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.93;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2953,309,0 chrXV 888445 . A G 3530.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.96;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3530,375,0 chrXV 888479 . A G 3288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=135;Dels=0.00;FS=7.559;HaplotypeScore=10.4832;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.562;QD=24.36;ReadPosRankSum=2.043;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:2,131:135:99:3288,345,0 chrXV 888521 . C T 3562.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.59;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3562,378,0 chrXV 888666 . T C 3440.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=22.63;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3440,369,0 chrXV 888746 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.1863;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.13;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3025,309,0 chrXV 888781 . A T 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.8148;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.125;QD=20.42;ReadPosRankSum=1.682;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2851,291,0 chrXV 888854 . T C 307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.645;DP=130;Dels=0.00;FS=6.138;HaplotypeScore=143.1268;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;MQRankSum=5.818;QD=2.36;ReadPosRankSum=-1.759;SB=-3.901e+01 GT:AD:DP:GQ:PL 1/1:90,37:130:3:337,3,0 chrXV 888888 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.8200;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=13.21;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1578,165,0 chrXV 888891 . C A 1461 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=12.07;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:1494,159,0 chrXV 889219 . C T 3681.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=23.15;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3681,388,0 chrXV 889336 . A G 4792.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.5900;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.96;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4792,508,0 chrXV 889418 . T C 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=147;Dels=0.00;FS=2.942;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=0.244;QD=21.18;ReadPosRankSum=2.365;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3147,333,0 chrXV 889442 . T C 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=162;Dels=0.00;FS=3.032;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;MQRankSum=0.883;QD=17.69;ReadPosRankSum=2.419;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:2898,303,0 chrXV 889462 . A G 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=168;Dels=0.00;FS=6.082;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=43.27;MQ0=0;MQRankSum=-1.449;QD=14.48;ReadPosRankSum=2.886;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:2466,264,0 chrXV 889468 . A T 2472 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=14.13;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2505,261,0 chrXV 889474 . T C 2450 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=13.92;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:2483,267,0 chrXV 889495 . A G 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;MQRankSum=0.846;QD=14.16;ReadPosRankSum=1.712;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:2468,267,0 chrXV 889642 . T C 1616 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=21.26;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1649,177,0 chrXV 889741 . G A 604 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=14.73;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:69:637,69,0 chrXV 889988 . A T 3318.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=26.76;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3318,345,0 chrXV 890036 . C G 4039.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.40;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4039,429,0 chrXV 890126 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.1194;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.49;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3853,397,0 chrXV 890314 . A T 4415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=181;Dels=0.00;FS=3.601;HaplotypeScore=9.3611;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.330;QD=24.39;ReadPosRankSum=1.675;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4415,469,0 chrXV 890409 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=3.606;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.977;QD=22.81;ReadPosRankSum=1.710;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3559,384,0 chrXV 890476 . C T 3778.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.9462;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.04;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3778,402,0 chrXV 890575 . A C 4479.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=16.9174;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.74;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4479,486,0 chrXV 890776 . G A 4494.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.29;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4494,466,0 chrXV 890797 . A G 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=1.440;QD=22.81;ReadPosRankSum=1.711;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3809,408,0 chrXV 890957 . G A 4229.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.9966;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.49;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4229,433,0 chrXV 891275 . G A 3798.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.30;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3798,400,0 chrXV 891413 . G T 4172.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.1096;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.98;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4172,433,0 chrXV 891444 . T C 3388.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.37;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3388,357,0 chrXV 891508 . A G 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=129;Dels=0.00;FS=5.646;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.820;QD=23.45;ReadPosRankSum=2.899;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:3058,324,0 chrXV 891617 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.12;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2903,303,0 chrXV 891758 . C T 3303.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.01;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3303,348,0 chrXV 891827 . G C 2637 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.8145;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.34;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2670,285,0 chrXV 892191 . G A 4419.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.89;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4419,451,0 chrXV 892301 . C T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3461,360,0 chrXV 892334 . T G 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=162;Dels=0.00;FS=3.174;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.962;QD=23.97;ReadPosRankSum=1.711;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3883,417,0 chrXV 892408 . T A 3622.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.07;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3622,373,0 chrXV 892890 . C G 3111 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.54;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3144,348,0 chrXV 894519 . C A 1943 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.57;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1976,201,0 chrXV 895158 . G A 4531.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.00;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4531,483,0 chrXV 895193 . G T 5019.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.5699;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5019,520,0 chrXV 896864 . C T 162.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;DP=140;Dels=0.00;FS=2.875;HaplotypeScore=19.8720;MLEAC=1;MLEAF=0.500;MQ=49.17;MQ0=0;MQRankSum=-8.452;QD=1.16;ReadPosRankSum=-6.938;SB=-1.380e+02 GT:AD:DP:GQ:PL 0/1:97,43:140:99:192,0,2017 chrXV 896879 . C T 207.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.864;DP=162;Dels=0.00;FS=0.751;HaplotypeScore=59.6445;MLEAC=1;MLEAF=0.500;MQ=47.12;MQ0=0;MQRankSum=-6.271;QD=1.28;ReadPosRankSum=-6.271;SB=-2.310e+02 GT:AD:DP:GQ:PL 0/1:117,45:162:99:237,0,2285 chrXV 896882 . T C 590.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.468;DP=168;Dels=0.01;FS=0.659;HaplotypeScore=63.6933;MLEAC=1;MLEAF=0.500;MQ=47.64;MQ0=0;MQRankSum=-8.143;QD=3.51;ReadPosRankSum=-5.908;SB=-4.240e+02 GT:AD:DP:GQ:PL 0/1:93,73:166:99:620,0,1972 chrXV 896888 . C T 899.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.940;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=37.5926;MLEAC=1;MLEAF=0.500;MQ=47.81;MQ0=0;MQRankSum=-7.257;QD=5.29;ReadPosRankSum=-4.459;SB=-4.760e+02 GT:AD:DP:GQ:PL 0/1:86,84:170:99:929,0,1785 chrXV 896915 . T G 1528.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.191;DP=182;Dels=0.00;FS=1.368;HaplotypeScore=33.6825;MLEAC=1;MLEAF=0.500;MQ=48.70;MQ0=0;MQRankSum=-0.102;QD=8.40;ReadPosRankSum=4.631;SB=-5.290e+02 GT:AD:DP:GQ:PL 0/1:85,97:182:99:1558,0,1409 chrXV 896924 . G T 686.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.457;DP=175;Dels=0.00;FS=5.257;HaplotypeScore=32.4689;MLEAC=1;MLEAF=0.500;MQ=48.20;MQ0=0;MQRankSum=2.168;QD=3.92;ReadPosRankSum=-6.265;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:132,43:175:99:716,0,2202 chrXV 896933 . T G 589.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.532;DP=177;Dels=0.00;FS=4.546;HaplotypeScore=37.7245;MLEAC=1;MLEAF=0.500;MQ=48.35;MQ0=0;MQRankSum=-4.124;QD=3.33;ReadPosRankSum=-7.730;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/1:122,54:177:99:619,0,2239 chrXV 900947 . T C 3122 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.78;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3155,339,0 chrXV 904881 . C T 2470 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2503,264,0 chrXV 905001 . C T 3711.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.95;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3711,382,0 chrXV 905482 . C T 3891.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.7290;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3891,409,0 chrXV 905895 . G A 914 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,41:43:99:947,99,0 chrXV 907181 . C A 5220.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=12.0087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5220,550,0 chrXV 907487 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.40;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3192,327,0 chrXV 907666 . C G 2458 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2491,267,0 chrXV 907705 . T C 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=113;Dels=0.00;FS=3.207;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.169;QD=21.88;ReadPosRankSum=1.609;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2506,267,0 chrXV 908860 . T A 5210.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.23;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5210,538,0 chrXV 916094 . C G 5149.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.5348;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:5149,547,0 chrXV 920814 . A C 5315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=14.4244;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.618;QD=21.61;ReadPosRankSum=1.718;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:1,242:246:99:5315,588,0 chrXV 921242 . C A 4017.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.35;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4017,412,0 chrXV 921271 . G T 3641.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.11;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3641,379,0 chrXV 921311 . A C 3392.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.06;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3392,372,0 chrXV 922090 . C T 4236.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.31;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4236,433,0 chrXV 922306 . G A 4406.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=15.9218;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.21;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4406,454,0 chrXV 923567 . T C 4082.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=24.59;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4082,432,0 chrXV 925103 . G A 2396 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.1735;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.87;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2429,252,0 chrXV 926126 . C T 5982.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=18.3756;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.93;SB=-3.182e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5982,604,0 chrXV 926925 . G A 3661.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.1519;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.32;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3661,376,0 chrXV 928129 . G A 4456.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.91;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4456,457,0 chrXV 928579 . T C 4096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=3.828;HaplotypeScore=9.6536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.363;QD=24.09;ReadPosRankSum=1.712;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4096,435,0 chrXV 929121 . C T 3922.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6699;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3922,412,0 chrXV 930118 . A G 5058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.375;DP=229;Dels=0.00;FS=7.977;HaplotypeScore=20.7801;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.324;QD=22.09;ReadPosRankSum=3.723;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:5,224:229:99:5058,555,0 chrXV 931610 . A G 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=3.093;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.327;QD=21.80;ReadPosRankSum=1.634;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2344,252,0 chrXV 931943 . G A 3684.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.58;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3684,411,0 chrXV 932327 . C T 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.9932;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.773;QD=25.29;ReadPosRankSum=-1.645;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:4047,401,0 chrXV 935504 . C T 4802.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4802,508,0 chrXV 937658 . C G 4731.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.9297;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.66;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4731,502,0 chrXV 941405 . C T 4929.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4929,520,0 chrXV 941514 . C T 3765.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3765,391,0 chrXV 942317 . C T 3746.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.86;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3746,399,0 chrXV 942594 . T C 6748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=16.7490;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.163;QD=25.37;ReadPosRankSum=2.431;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:2,261:266:99:6748,715,0 chrXV 942759 . T C 8268.01 PASS AC=2;AF=1.00;AN=2;DP=352;Dels=0.00;FS=0.000;HaplotypeScore=18.1082;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.49;SB=-3.630e+03 GT:AD:DP:GQ:PL 1/1:0,350:352:99:8268,904,0 chrXV 944430 . T C 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=89;Dels=0.00;FS=4.721;HaplotypeScore=8.9094;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.692;QD=18.24;ReadPosRankSum=-0.765;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,85:89:99:1656,174,0 chrXV 945621 . G A 2833 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=20.09;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2866,297,0 chrXV 945624 . T C 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=3.711;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;MQRankSum=0.160;QD=18.20;ReadPosRankSum=1.658;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2618,291,0 chrXV 945647 . C T 2314 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.2902;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=18.66;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2347,246,0 chrXV 945663 . T G 2269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.2735;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=0.682;QD=17.19;ReadPosRankSum=1.706;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2302,252,0 chrXV 945784 . C T 4182.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.50;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4182,430,0 chrXV 946466 . A G 4516.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=18.28;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:4516,478,0 chrXV 946490 . A C 4420.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=17.82;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:4420,474,0 chrXV 946686 . C T 4116.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.9712;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=26.38;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4116,424,0 chrXV 948120 . G A 5844.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.41;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5844,631,0 chrXV 950558 . A C 2220 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2253,243,0 chrXV 950909 . G A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3290,342,0 chrXV 952140 . G A 3197 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3230,331,0 chrXV 952737 . A G 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.974;QD=25.03;ReadPosRankSum=1.678;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3237,339,0 chrXV 952849 . C T 2001 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=12.7702;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.06;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,92:95:99:2034,207,0 chrXV 955663 . G A 4672.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.13;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4672,490,0 chrXV 956880 . G C 2248 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.9596;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.66;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2281,243,0 chrXV 958080 . T A 2209 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.25;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2242,234,0 chrXV 959820 . G A 4665.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.17;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4665,481,0 chrXV 960428 . G A 3132 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=26.10;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3165,336,0 chrXV 962202 . C T 4401.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.2706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.74;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4401,451,0 chrXV 962707 . A G 5676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=250;Dels=0.00;FS=6.217;HaplotypeScore=20.4546;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.273;QD=22.70;ReadPosRankSum=2.281;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:2,245:250:99:5676,604,0 chrXV 966325 . A G 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.225;DP=129;Dels=0.00;FS=8.496;HaplotypeScore=10.0900;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.568;QD=23.67;ReadPosRankSum=3.362;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:4,124:129:99:3087,318,0 chrXV 968186 . G A 3161 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.74;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3194,336,0 chrXV 968286 . T A 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=2.978;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.881;QD=22.62;ReadPosRankSum=2.353;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3438,366,0 chrXV 968332 . T G 3375.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.06;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3375,372,0 chrXV 968360 . C T 3554.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.21;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3554,381,0 chrXV 968440 . A G 5117.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,206:210:99:5117,544,0 chrXV 968617 . C T 4190.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.0094;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.81;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4190,450,0 chrXV 968647 . T C 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=189;Dels=0.00;FS=10.831;HaplotypeScore=10.3336;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=1.457;QD=23.28;ReadPosRankSum=2.952;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:3,184:189:99:4400,489,0 chrXV 968773 . C T 3087 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.05;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3120,327,0 chrXV 968822 . G A 3463.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=24.74;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3463,366,0 chrXV 968865 . C T 3395.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=25.34;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3395,354,0 chrXV 968882 . C T 3670.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=25.66;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3670,379,0 chrXV 968942 . C T 2952 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=21.55;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2985,318,0 chrXV 968970 . C T 2563 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=20.50;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2596,270,0 chrXV 968991 . C T 2617 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=21.28;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2650,276,0 chrXV 969023 . A G 2559 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.64;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2592,276,0 chrXV 969046 . G A 2359 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.51;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2392,252,0 chrXV 969067 . T C 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=4.157;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-1.114;QD=20.57;ReadPosRankSum=1.701;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2337,246,0 chrXV 969164 . A G 1547 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;QD=19.58;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1580,171,0 chrXV 969177 . C T 1553 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;QD=20.43;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1586,168,0 chrXV 969193 . T C 1268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=7.249;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.13;MQ0=0;MQRankSum=-0.477;QD=18.38;ReadPosRankSum=1.632;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1301,141,0 chrXV 969198 . T C 1220 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=20.00;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1253,132,0 chrXV 969237 . C T 2155 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.4870;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=23.94;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2188,228,0 chrXV 969272 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=25.85;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2618,279,0 chrXV 969464 . G A 3006 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.44;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3039,315,0 chrXV 973677 . C T 2587 filter AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=18.53;MQ0=96;QD=8.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:91,203:296:99:2620,267,0 chrXV 973707 . A C 431.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.926;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=8.4126;MLEAC=1;MLEAF=0.500;MQ=14.76;MQ0=101;MQRankSum=-1.327;QD=1.41;ReadPosRankSum=-0.444;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:203,103:306:99:461,0,564 chrXV 974075 . T C 669.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.401;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.2860;MLEAC=1;MLEAF=0.500;MQ=24.03;MQ0=15;MQRankSum=2.735;QD=3.72;ReadPosRankSum=3.256;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,76:180:99:699,0,683 chrXV 974076 . C T 1700 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.9189;MLEAC=2;MLEAF=1.00;MQ=24.14;MQ0=14;QD=9.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,172:177:99:1733,186,0 chrXV 974082 . C T 448.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.943;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=23.06;MQ0=16;MQRankSum=-1.436;QD=2.62;ReadPosRankSum=-0.535;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,90:171:99:478,0,685 chrXV 974083 . A G 376.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=22.94;MQ0=16;MQRankSum=-1.368;QD=2.24;ReadPosRankSum=0.091;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,88:168:99:406,0,703 chrXV 974088 . C T 339.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.816;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=21.77;MQ0=20;MQRankSum=-2.441;QD=2.05;ReadPosRankSum=0.630;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,87:165:99:369,0,661 chrXV 974121 . G T 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.171;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=17.2369;MLEAC=1;MLEAF=0.500;MQ=15.88;MQ0=41;MQRankSum=-0.397;QD=0.39;ReadPosRankSum=3.795;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,67:159:92:92,0,274 chrXV 974123 . A G 60.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.696;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=17.9862;MLEAC=1;MLEAF=0.500;MQ=15.48;MQ0=41;MQRankSum=1.312;QD=0.39;ReadPosRankSum=2.674;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,67:154:90:90,0,262 chrXV 974127 . T C 85.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.475;DP=162;Dels=0.01;FS=0.000;HaplotypeScore=70.7092;MLEAC=1;MLEAF=0.500;MQ=14.84;MQ0=48;MQRankSum=0.173;QD=0.52;ReadPosRankSum=0.389;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,69:161:99:115,0,267 chrXV 976341 . T C 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5820;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=-0.880;QD=24.54;ReadPosRankSum=0.330;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3125,330,0 chrXV 980197 . C T 1982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.021;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6829;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;MQRankSum=1.064;QD=23.88;ReadPosRankSum=1.690;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:2015,185,0 chrXV 980242 . A T 1695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;MQRankSum=-1.493;QD=19.48;ReadPosRankSum=1.692;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1728,180,0 chrXV 980261 . G C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrXV 980586 . C T 109.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.782;DP=48;Dels=0.00;FS=40.752;HaplotypeScore=8.6954;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=1;MQRankSum=3.260;QD=2.28;ReadPosRankSum=1.697;SB=-5.627e+01 GT:AD:DP:GQ:PL 1/1:5,43:48:15:142,15,0 chrXV 980701 . A T 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=4.372;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;MQRankSum=1.399;QD=23.83;ReadPosRankSum=1.699;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2511,267,0 chrXV 981009 . T C 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.993;QD=26.02;ReadPosRankSum=1.654;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2349,249,0 chrXV 981291 . T G 2135 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.21;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2168,234,0 chrXV 981687 . C T 2380 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.79;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2413,255,0 chrXV 981716 . C T 2130 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.73;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2163,222,0 chrXV 981717 . C T 2155 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=22.45;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2188,222,0 chrXV 982131 . G A 2407 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.23;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2440,264,0 chrXV 982135 . A T 2340 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.83;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2373,255,0 chrXV 982145 . T C 2327 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=18.92;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2360,252,0 chrXV 982641 . C T 4048.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.6284;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.62;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4048,424,0 chrXV 983371 . T C 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.205;QD=23.88;ReadPosRankSum=1.692;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4084,450,0 chrXV 983798 . A C 4188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=172;Dels=0.00;FS=3.114;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.876;QD=24.35;ReadPosRankSum=1.080;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:4188,447,0 chrXV 984300 . A G 3531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=4.058;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.683;QD=25.22;ReadPosRankSum=1.707;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3531,375,0 chrXV 984859 . T C 1640 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=18.64;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1673,177,0 chrXV 984992 . C T 4118.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.7137;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.74;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4118,427,0 chrXV 986858 . A T 3976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=166;Dels=0.00;FS=4.277;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.336;QD=23.95;ReadPosRankSum=1.690;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3976,423,0 chrXV 987409 . C G 6613.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=23.9815;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.68;SB=-3.535e+03 GT:AD:DP:GQ:PL 1/1:0,300:305:99:6613,738,0 chrXV 987547 . A G 6404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.060;DP=298;Dels=0.00;FS=15.083;HaplotypeScore=20.3092;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.012;QD=21.49;ReadPosRankSum=4.190;SB=-3.737e+03 GT:AD:DP:GQ:PL 1/1:6,290:298:99:6404,694,0 chrXV 987667 . G A 4908.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.37;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:4908,517,0 chrXV 987922 . G C 4279.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.73;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4279,448,0 chrXV 987982 . T C 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.379;DP=177;Dels=0.01;FS=8.294;HaplotypeScore=10.9740;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-0.359;QD=17.65;ReadPosRankSum=3.379;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:4,169:176:99:3157,336,0 chrXV 987985 . C A 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.2985;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=-0.971;QD=18.30;ReadPosRankSum=2.783;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:3181,336,0 chrXV 988096 . G A 5457.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.0803;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.36;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,219:224:99:5457,580,0 chrXV 988183 . G A 5073.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.6242;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.06;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5073,523,0 chrXV 988575 . A T 7495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.284;DP=335;Dels=0.00;FS=9.095;HaplotypeScore=16.3650;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.565;QD=22.37;ReadPosRankSum=3.337;SB=-4.508e+03 GT:AD:DP:GQ:PL 1/1:4,330:335:99:7495,778,0 chrXV 991809 . G A 5160.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5160,532,0 chrXV 992008 . T C 4797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=208;Dels=0.00;FS=7.317;HaplotypeScore=12.6188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.567;QD=23.06;ReadPosRankSum=2.426;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:2,204:208:99:4797,519,0 chrXV 992356 . C G 3860.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.71;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3860,405,0 chrXV 993116 . C G 2804 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.77;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2837,300,0 chrXV 993617 . G A 2815 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2848,294,0 chrXV 993703 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9810;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.91;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3338,351,0 chrXV 994106 . C A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.6600;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.08;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3564,372,0 chrXV 994342 . T C 2819 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.92;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2852,306,0 chrXV 994833 . T C 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=3.997;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.000;QD=23.29;ReadPosRankSum=1.704;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2898,315,0 chrXV 995180 . A G 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=152;Dels=0.00;FS=3.436;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-1.501;QD=21.76;ReadPosRankSum=1.686;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3307,369,0 chrXV 995834 . G A 3627.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.59;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3627,381,0 chrXV 996026 . T C 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=145;Dels=0.00;FS=10.706;HaplotypeScore=10.5789;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.255;QD=23.03;ReadPosRankSum=2.908;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:3,139:145:99:3340,351,0 chrXV 996329 . C T 4258.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.77;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4258,451,0 chrXV 996335 . A G 3890.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.61;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3890,411,0 chrXV 996462 . A G 4920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=12.6284;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.075;QD=19.92;ReadPosRankSum=2.430;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:4920,531,0 chrXV 997347 . C T 4588.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.37;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4588,478,0 chrXV 997483 . C G 5168.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=11.9924;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.53;SB=-3.210e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5168,544,0 chrXV 997902 . G C 3038 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.0261;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3071,336,0 chrXV 998245 . C A 1394 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=19.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1427,147,0 chrXV 998270 . A T 26.77 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=53;Dels=0.04;FS=0.000;HaplotypeScore=48.3254;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=-1.741;QD=0.51;ReadPosRankSum=2.862;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:3,48:51:6:58,6,0 chrXV 998272 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=48.3254;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=0.42;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,50:50:6:52,6,0 chrXV 998921 . G A 5722.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-3.166e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5722,604,0 chrXV 999385 . T C 5995.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=9.7179;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.15;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5995,637,0 chrXV 999645 . G A 3667.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.4254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3667,376,0 chrXV 999686 . T C 3358.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.7134;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3358,354,0 chrXV 1000192 . G A 5763.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5763,592,0 chrXV 1002323 . C G 3694.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3694,390,0 chrXV 1002519 . C T 4444.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.30;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4444,457,0 chrXV 1004868 . A T 1388 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1421,147,0 chrXV 1007685 . G C 3685.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4546;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.03;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3685,399,0 chrXV 1008507 . C A 5737.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.31;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5737,601,0 chrXV 1008780 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.34;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3529,367,0 chrXV 1013769 . T G 3155 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3188,339,0 chrXV 1014513 . A C 4781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.729;DP=227;Dels=0.00;FS=5.518;HaplotypeScore=12.1464;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.662;QD=21.06;ReadPosRankSum=2.960;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:3,223:227:99:4781,516,0 chrXV 1015011 . C T 2446 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,94:97:99:2479,255,0 chrXV 1015648 . A G 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.7301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.208;QD=22.96;ReadPosRankSum=1.692;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3995,423,0 chrXV 1016525 . A G 4093.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.24;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4093,456,0 chrXV 1017317 . C A 4375.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.9410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4375,454,0 chrXV 1019078 . C T 4556.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.01;FS=0.000;HaplotypeScore=6.6933;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.31;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4556,472,0 chrXV 1037514 . A C 697 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=20.50;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:78:730,78,0 chrXV 1037520 . T C 547 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.26;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:63:580,63,0 chrXV 1043118 . T C 3037 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.7209;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3070,321,0 chrXV 1045703 . A C 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.155;QD=24.73;ReadPosRankSum=1.663;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3710,390,0 chrXV 1049615 . G A 4308.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=16.8363;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:4308,448,0 chrXV 1053017 . A G 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=147;Dels=0.00;FS=3.101;HaplotypeScore=10.9139;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.585;QD=24.29;ReadPosRankSum=1.684;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3570,384,0 chrXV 1055293 . G A 3204 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3237,331,0 chrXV 1057321 . C T 5071.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=17.2274;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.76;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5071,532,0 chrXV 1059307 . A T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.14;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3839,403,0 chrXV 1060135 . C T 1135 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8923;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.24;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1168,126,0 chrXV 1063895 . C T 3993.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.63;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3993,420,0 chrXV 1064011 . C T 3862.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.7153;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.29;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3862,394,0 chrXV 1065093 . T C 3398.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.27;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3398,369,0 chrXV 1068670 . G T 4189.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4189,433,0 chrXV 1068814 . T C 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=4.771;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.398;QD=23.73;ReadPosRankSum=1.702;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2738,291,0 chrXV 1070614 . T G 132.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.544;DP=184;Dels=0.00;FS=1.371;HaplotypeScore=7.4956;MLEAC=1;MLEAF=0.500;MQ=50.49;MQ0=0;MQRankSum=-8.664;QD=0.72;ReadPosRankSum=3.860;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:136,47:184:99:162,0,2971 chrXV 1070618 . G C 144.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.740;DP=187;Dels=0.00;FS=3.965;HaplotypeScore=6.9140;MLEAC=1;MLEAF=0.500;MQ=50.22;MQ0=0;MQRankSum=-8.930;QD=0.77;ReadPosRankSum=2.998;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:135,51:187:99:174,0,2819 chrXV 1070622 . G A 212.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.654;DP=188;Dels=0.00;FS=5.006;HaplotypeScore=8.4366;MLEAC=1;MLEAF=0.500;MQ=50.27;MQ0=0;MQRankSum=-9.007;QD=1.13;ReadPosRankSum=3.229;SB=-1.550e+02 GT:AD:DP:GQ:PL 0/1:137,51:188:99:242,0,3009 chrXV 1070645 . C G 358.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;DP=195;Dels=0.00;FS=17.185;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=49.02;MQ0=1;MQRankSum=-9.754;QD=1.84;ReadPosRankSum=-1.449;SB=-1.750e+02 GT:AD:DP:GQ:PL 0/1:129,65:195:99:388,0,2786 chrXV 1070806 . G A 66.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.179;DP=182;Dels=0.00;FS=13.872;HaplotypeScore=8.1847;MLEAC=1;MLEAF=0.500;MQ=53.30;MQ0=0;MQRankSum=-8.930;QD=0.36;ReadPosRankSum=0.594;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:144,38:182:96:96,0,2919 chrXV 1070807 . A G 72.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.714;DP=180;Dels=0.00;FS=12.254;HaplotypeScore=8.1847;MLEAC=1;MLEAF=0.500;MQ=53.22;MQ0=0;MQRankSum=-9.199;QD=0.40;ReadPosRankSum=0.978;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:143,37:180:99:102,0,3119 chrXV 1070834 . G A 408.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.779;DP=155;Dels=0.00;FS=43.094;HaplotypeScore=11.1140;MLEAC=1;MLEAF=0.500;MQ=51.74;MQ0=0;MQRankSum=-9.367;QD=2.63;ReadPosRankSum=1.044;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,46:155:99:438,0,2085 chrXV 1070850 . C A 442.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;DP=159;Dels=0.00;FS=41.145;HaplotypeScore=10.5233;MLEAC=1;MLEAF=0.500;MQ=51.78;MQ0=0;MQRankSum=-9.267;QD=2.78;ReadPosRankSum=0.194;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,52:159:99:472,0,2219 chrXV 1070955 . C G 189.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.157;DP=219;Dels=0.00;FS=23.026;HaplotypeScore=13.4583;MLEAC=1;MLEAF=0.500;MQ=51.92;MQ0=2;MQRankSum=-11.413;QD=0.86;ReadPosRankSum=2.969;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:153,63:219:99:219,0,3337 chrXV 1070965 . G T 96.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.769;DP=209;Dels=0.00;FS=16.526;HaplotypeScore=11.9533;MLEAC=1;MLEAF=0.500;MQ=52.90;MQ0=2;MQRankSum=-10.544;QD=0.46;ReadPosRankSum=2.901;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:155,51:209:99:126,0,3164 chrXV 1071267 . A C 3140 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=23.97;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3173,342,0 chrXV 1071523 . A G 963 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=2;MQRankSum=-1.732;QD=15.29;ReadPosRankSum=1.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,60:63:99:996,108,0 chrXV 1074170 . C T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=3.9071;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=0;QD=1.27;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,13:14:6:49,6,0 chrXV 1074173 . C T 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=0;QD=3.57;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:82,9,0 chrXV 1074176 . T C 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=0;QD=3.14;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:76,9,0 chrXV 1074186 . G A 52.97 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;QD=4.82;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:85,9,0 chrXV 1074187 . C T 53.97 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;QD=4.91;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:86,9,0 chrXV 1074193 . T G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.40;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:55,6,0 chrXV 1074195 . T C 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.40;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:55,6,0 chrXV 1074196 . A C 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.97;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:59,6,0 chrXV 1074198 . T C 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.26;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:54,6,0 chrXV 1074205 . C G 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.56;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:54,6,0 chrXV 1074209 . A G 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.70;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:54,6,0 chrXV 1074211 . T G 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.49;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:45,6,0 chrXV 1074216 . A C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.01;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:43,6,0 chrXV 1074287 . A G 286 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.48;MQ0=0;QD=22.00;SB=-5.700e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:39:319,39,0 chrXV 1074295 . A G 397 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.35;MQ0=0;QD=23.35;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:51:430,51,0 chrXV 1074302 . T C 591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=28;Dels=0.00;FS=9.243;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.05;MQ0=0;MQRankSum=-1.740;QD=21.11;ReadPosRankSum=2.186;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:2,26:28:75:624,75,0 chrXV 1074311 . G A 1145 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=32.83;MQ0=0;QD=21.20;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1178,132,0 chrXV 1074398 . A T 2021.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.055;DP=169;Dels=0.00;FS=0.804;HaplotypeScore=7.4176;MLEAC=1;MLEAF=0.500;MQ=33.08;MQ0=15;MQRankSum=2.425;QD=11.96;ReadPosRankSum=-0.298;SB=-4.040e+02 GT:AD:DP:GQ:PL 0/1:62,107:169:99:2051,0,1128 chrXV 1074443 . A G 1546 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7567;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=20;QD=17.98;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1579,168,0 chrXV 1074485 . A G 497.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;DP=50;Dels=0.00;FS=42.118;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=25.64;MQ0=11;MQRankSum=1.619;QD=9.94;ReadPosRankSum=3.162;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,27:50:99:527,0,239 chrXV 1074569 . G A 2483 filter AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=7;QD=17.86;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2516,264,0 chrXV 1074669 . C G 731 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=17;QD=11.79;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,42:62:87:764,87,0 chrXV 1074671 . T C 812 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=64;Dels=0.00;FS=9.546;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=29.28;MQ0=17;MQRankSum=-2.135;QD=12.69;ReadPosRankSum=2.345;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:93:845,93,0 chrXV 1074721 . A G 1001 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.747;DP=59;Dels=0.00;FS=6.201;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=6;MQRankSum=-0.942;QD=16.97;ReadPosRankSum=2.708;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:5,54:59:99:1034,111,0 chrXV 1074725 . A G 962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=44;Dels=0.00;FS=6.537;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.99;MQ0=0;MQRankSum=-0.085;QD=21.86;ReadPosRankSum=2.226;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:2,42:44:99:995,108,0 chrXV 1074746 . C T 689 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=0;QD=24.61;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:75:722,75,0 chrXV 1074764 . C T 439.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=30.17;MQ0=0;MQRankSum=-0.778;QD=17.56;ReadPosRankSum=-0.778;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/1:4,21:25:41:469,0,41 chrXV 1074803 . A G 401 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=29;Dels=0.00;FS=12.553;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=22.61;MQ0=11;MQRankSum=1.542;QD=13.83;ReadPosRankSum=-0.964;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,26:29:51:434,51,0 chrXV 1075223 . C T 1506 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=31.35;MQ0=2;QD=9.97;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,146:151:99:1539,162,0 chrXV 1075226 . C T 1443 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=7;QD=9.68;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:3,145:149:99:1476,159,0 chrXV 1075230 . C T 1346 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.070;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.5032;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=8;MQRankSum=-1.044;QD=9.35;ReadPosRankSum=0.153;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:7,137:144:99:1379,123,0 chrXV 1075231 . A G 1386 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.5032;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=9;QD=9.49;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:6,138:146:99:1419,153,0 chrXV 1075245 . A G 1225 filter AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=24.03;MQ0=15;QD=7.80;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,154:157:99:1258,135,0 chrXV 1075409 . T G 2086.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.910;DP=227;Dels=0.00;FS=580.958;HaplotypeScore=12.0718;MLEAC=1;MLEAF=0.500;MQ=33.76;MQ0=0;MQRankSum=2.024;QD=9.19;ReadPosRankSum=1.858;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:130,97:227:99:2116,0,881 chrXV 1075521 . A G 1299 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=130;Dels=0.00;FS=6.727;HaplotypeScore=11.2048;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=57;MQRankSum=1.859;QD=9.99;ReadPosRankSum=2.346;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:2,126:130:99:1332,150,0 chrXV 1075581 . T C 3461.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=185;Dels=0.00;FS=8.046;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=35.76;MQ0=8;MQRankSum=-0.286;QD=18.71;ReadPosRankSum=2.408;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,180:185:99:3461,369,0 chrXV 1075593 . C G 3804.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.02;MQ0=2;QD=19.51;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:3804,402,0 chrXV 1075610 . T C 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=185;Dels=0.00;FS=4.543;HaplotypeScore=6.7170;MLEAC=2;MLEAF=1.00;MQ=36.12;MQ0=0;MQRankSum=-1.545;QD=20.90;ReadPosRankSum=1.676;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3867,420,0 chrXV 1075718 . G T 404 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=31.88;MQ0=3;QD=12.24;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:48:437,48,0 chrXV 1075738 . C T 649 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.38;MQ0=3;QD=17.08;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:69:682,69,0 chrXV 1075901 . A G 359 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.69;MQ0=1;MQRankSum=-1.735;QD=18.89;ReadPosRankSum=1.542;SB=-6.930e-03 GT:AD:DP:GQ:PL 1/1:1,18:19:42:392,42,0 chrXV 1076094 . C A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.84;MQ0=29;QD=0.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:6:55,6,0 chrXV 1077385 . C T 618.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.050;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.5309;MLEAC=1;MLEAF=0.500;MQ=19.67;MQ0=117;MQRankSum=2.325;QD=2.96;ReadPosRankSum=0.151;SB=-2.410e+02 GT:AD:DP:GQ:PL 0/1:131,75:209:99:648,0,976 chrXV 1077431 . T C 2398 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=23.20;MQ0=97;MQRankSum=-2.286;QD=11.87;ReadPosRankSum=2.403;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:2431,264,0 chrXV 1078198 . T A 313.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.811;DP=61;Dels=0.00;FS=1.625;HaplotypeScore=3.2416;MLEAC=1;MLEAF=0.500;MQ=45.84;MQ0=1;MQRankSum=1.007;QD=5.13;ReadPosRankSum=-0.157;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/1:34,27:61:99:343,0,426 chrXV 1078444 . C T 69.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.395;DP=124;Dels=0.00;FS=6.709;HaplotypeScore=1.7845;MLEAC=1;MLEAF=0.500;MQ=13.74;MQ0=92;MQRankSum=1.132;QD=0.56;ReadPosRankSum=1.341;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:72,52:124:99:99,0,435 chrXV 1078509 . A G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.203;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=10.33;MQ0=116;MQRankSum=-1.737;QD=0.18;ReadPosRankSum=1.470;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:1,128:129:6:55,6,0 chrXV 1078958 . C T 5080.01 filter AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=27.02;MQ0=28;QD=23.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5080,526,0 chrXV 1079170 . T C 5213.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.534;DP=433;Dels=0.00;FS=1.199;HaplotypeScore=30.5302;MLEAC=1;MLEAF=0.500;MQ=45.80;MQ0=0;MQRankSum=0.179;QD=12.04;ReadPosRankSum=-0.735;SB=-2.663e+03 GT:AD:DP:GQ:PL 0/1:146,286:433:99:5213,0,2266 chrXV 1079816 . G T 847 filter AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=14.73;MQ0=154;QD=4.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,200:203:93:880,93,0 chrXV 1083260 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.74;MQ0=160;QD=0.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,163:168:6:52,6,0 chrXV 1083328 . G T 154.06 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.10;MQ0=21;QD=3.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:42:21:187,21,0 chrXV 1083653 . G A 154.06 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.22;MQ0=51;QD=2.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:21:187,21,0 chrXV 1083684 . T C 175.03 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.94;MQ0=27;QD=2.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,71:73:24:208,24,0 chrXV 1083729 . C T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=14.62;MQ0=6;QD=0.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:68:6:48,6,0 chrXV 1091003 . G C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.58;MQ0=129;QD=0.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:112,18:131:6:55,6,0 chrXV 1091041 . T C 20.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=5.51;MQ0=80;MQRankSum=0.736;QD=0.24;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,35:83:20:50,0,20 chrXV 1091243 . G A 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.23;MQ0=79;MQRankSum=0.720;QD=0.71;ReadPosRankSum=-0.720;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:58,27:85:35:90,0,35 chrXV 1091267 . G A 129.13 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=16.18;MQ0=16;QD=5.87;SB=-2.988e+01 GT:AD:DP:GQ:PL 1/1:4,18:22:18:162,18,0 chrXVI 6804 . C T 53.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:9:86,9,0 chrXVI 6807 . T C 113.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;MQRankSum=0.742;QD=16.18;ReadPosRankSum=0.742;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,6:7:15:146,15,0 chrXVI 6879 . T C 385 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.06;MQ0=2;QD=13.28;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:42:418,42,0 chrXVI 6905 . T C 261.01 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.21;MQ0=2;QD=12.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,19:21:27:294,27,0 chrXVI 6910 . C A 258.01 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.08;MQ0=2;QD=14.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,16:18:27:291,27,0 chrXVI 7021 . A G 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.84;MQ0=18;QD=1.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:18,4:22:6:59,6,0 chrXVI 7037 . C T 26.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.92;MQ0=17;MQRankSum=-1.741;QD=0.96;ReadPosRankSum=0.696;SB=4.272e-03 GT:AD:DP:GQ:PL 0/1:18,9:27:23:56,0,23 chrXVI 7043 . C A 52.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.61;MQ0=17;MQRankSum=-0.290;QD=1.79;ReadPosRankSum=0.290;SB=0.074 GT:AD:DP:GQ:PL 0/1:18,11:29:19:82,0,19 chrXVI 7055 . C T 61.77 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=9.5970;MLEAC=1;MLEAF=0.500;MQ=14.36;MQ0=18;QD=2.06;SB=19.49 GT:AD:DP:GQ:PL 1/1:18,11:30:9:93,9,0 chrXVI 7056 . C T 52.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.448;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=9.5970;MLEAC=1;MLEAF=0.500;MQ=14.36;MQ0=18;MQRankSum=-1.159;QD=1.73;ReadPosRankSum=0.000;SB=0.044 GT:AD:DP:GQ:PL 0/1:19,11:30:21:82,0,21 chrXVI 7076 . T A 53.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.88;MQ0=12;MQRankSum=-1.734;QD=1.71;ReadPosRankSum=-1.734;SB=0.303 GT:AD:DP:GQ:PL 0/1:13,18:31:20:83,0,20 chrXVI 7079 . T A 55.03 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.16;MQ0=11;MQRankSum=-0.639;QD=1.83;ReadPosRankSum=-1.734;SB=0.385 GT:AD:DP:GQ:PL 0/1:12,18:30:20:85,0,20 chrXVI 7087 . A G 39.03 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.86;MQ0=9;MQRankSum=-1.735;QD=1.45;ReadPosRankSum=-1.735;SB=0.379 GT:AD:DP:GQ:PL 0/1:10,17:27:19:69,0,19 chrXVI 7088 . C A 39.05 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.542;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.20;MQ0=8;MQRankSum=-0.771;QD=1.50;ReadPosRankSum=-1.735;SB=0.588 GT:AD:DP:GQ:PL 0/1:9,17:26:17:69,0,17 chrXVI 7090 . T C 52.03 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.56;MQ0=7;MQRankSum=-0.385;QD=2.08;ReadPosRankSum=-1.735;SB=0.303 GT:AD:DP:GQ:PL 0/1:8,17:25:20:82,0,20 chrXVI 7095 . C T 50.05 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=3.9839;MLEAC=1;MLEAF=0.500;MQ=19.78;MQ0=4;MQRankSum=-0.385;QD=2.27;ReadPosRankSum=-0.578;SB=0.588 GT:AD:DP:GQ:PL 0/1:5,17:22:17:80,0,17 chrXVI 7105 . A G 24.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.733;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.24;MQ0=3;MQRankSum=0.000;QD=1.91;ReadPosRankSum=1.733;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:5,8:13:6:56,6,0 chrXVI 12691 . T A 1010 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.339;DP=171;Dels=0.00;FS=8.009;HaplotypeScore=4.7025;MLEAC=2;MLEAF=1.00;MQ=15.37;MQ0=122;MQRankSum=0.834;QD=5.91;ReadPosRankSum=0.328;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:98,73:171:84:1043,84,0 chrXVI 12701 . G A 90.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.727;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=1;MLEAF=0.500;MQ=16.01;MQ0=105;MQRankSum=-4.116;QD=0.57;ReadPosRankSum=-2.422;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:105,52:157:99:120,0,687 chrXVI 13130 . C G 122.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=24.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:155,15,0 chrXVI 14667 . G T 3009.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.483;DP=525;Dels=0.00;FS=8.921;HaplotypeScore=24.5342;MLEAC=1;MLEAF=0.500;MQ=52.90;MQ0=0;MQRankSum=4.382;QD=5.73;ReadPosRankSum=-0.499;SB=-1.244e+03 GT:AD:DP:GQ:PL 0/1:337,186:525:99:3039,0,6827 chrXVI 14828 . T A 5643.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.845;DP=444;Dels=0.00;FS=2.932;HaplotypeScore=46.9019;MLEAC=1;MLEAF=0.500;MQ=34.37;MQ0=8;MQRankSum=1.008;QD=12.71;ReadPosRankSum=1.988;SB=-2.202e+03 GT:AD:DP:GQ:PL 0/1:139,305:444:99:5643,0,1235 chrXVI 15039 . G T 6207.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.402;DP=449;Dels=0.00;FS=23.158;HaplotypeScore=18.3131;MLEAC=1;MLEAF=0.500;MQ=46.46;MQ0=23;MQRankSum=-1.481;QD=13.82;ReadPosRankSum=4.062;SB=-2.036e+03 GT:AD:DP:GQ:PL 0/1:160,288:449:99:6207,0,3138 chrXVI 15589 . A C 6042.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.224;DP=555;Dels=0.00;FS=31.735;HaplotypeScore=25.6077;MLEAC=1;MLEAF=0.500;MQ=42.23;MQ0=13;MQRankSum=-4.918;QD=10.89;ReadPosRankSum=2.029;SB=-2.921e+03 GT:AD:DP:GQ:PL 0/1:207,346:555:99:6042,0,3426 chrXVI 15669 . C A 1435.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.144;DP=542;Dels=0.00;FS=483.570;HaplotypeScore=32.3764;MLEAC=1;MLEAF=0.500;MQ=51.64;MQ0=0;MQRankSum=-14.540;QD=2.65;ReadPosRankSum=1.114;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:409,133:542:99:1465,0,9085 chrXVI 15762 . C A 9780.01 filter AC=2;AF=1.00;AN=2;DP=503;Dels=0.00;FS=0.000;HaplotypeScore=35.4710;MLEAC=2;MLEAF=1.00;MQ=25.39;MQ0=85;QD=19.44;SB=-3.236e+03 GT:AD:DP:GQ:PL 1/1:0,502:503:99:9780,950,0 chrXVI 15939 . A G 5052.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.627;DP=533;Dels=0.00;FS=2.672;HaplotypeScore=27.7206;MLEAC=1;MLEAF=0.500;MQ=41.01;MQ0=1;MQRankSum=-6.491;QD=9.48;ReadPosRankSum=1.371;SB=-2.454e+03 GT:AD:DP:GQ:PL 0/1:274,259:533:99:5052,0,5932 chrXVI 16098 . G T 6454.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.222;DP=452;Dels=0.00;FS=271.556;HaplotypeScore=29.0667;MLEAC=1;MLEAF=0.500;MQ=30.20;MQ0=13;MQRankSum=2.492;QD=14.28;ReadPosRankSum=-1.617;SB=-3.011e+03 GT:AD:DP:GQ:PL 0/1:93,355:452:99:6454,0,1134 chrXVI 16314 . G A 2689.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.326;DP=514;Dels=0.00;FS=3.549;HaplotypeScore=29.8432;MLEAC=1;MLEAF=0.500;MQ=37.12;MQ0=2;MQRankSum=-2.313;QD=5.23;ReadPosRankSum=-0.256;SB=-1.051e+03 GT:AD:DP:GQ:PL 0/1:347,165:514:99:2719,0,7703 chrXVI 16412 . T C 1471.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.897;DP=474;Dels=0.00;FS=0.376;HaplotypeScore=38.6983;MLEAC=1;MLEAF=0.500;MQ=42.93;MQ0=25;MQRankSum=-0.584;QD=3.10;ReadPosRankSum=-4.323;SB=-9.370e+02 GT:AD:DP:GQ:PL 0/1:337,137:474:99:1501,0,6503 chrXVI 16500 . A G 7112.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.640;DP=441;Dels=0.00;FS=4.837;HaplotypeScore=19.3897;MLEAC=2;MLEAF=1.00;MQ=29.97;MQ0=24;MQRankSum=-3.715;QD=16.13;ReadPosRankSum=3.802;SB=-3.272e+03 GT:AD:DP:GQ:PL 1/1:5,434:441:99:7112,721,0 chrXVI 16596 . T C 2851.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.717;DP=502;Dels=0.00;FS=16.066;HaplotypeScore=59.3973;MLEAC=1;MLEAF=0.500;MQ=45.90;MQ0=7;MQRankSum=6.775;QD=5.68;ReadPosRankSum=0.996;SB=-1.077e+03 GT:AD:DP:GQ:PL 0/1:344,156:502:99:2881,0,6773 chrXVI 16662 . A G 4926.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.005;DP=510;Dels=0.00;FS=32.183;HaplotypeScore=20.0956;MLEAC=1;MLEAF=0.500;MQ=40.58;MQ0=24;MQRankSum=-18.045;QD=9.66;ReadPosRankSum=2.062;SB=-1.385e+03 GT:AD:DP:GQ:PL 0/1:212,297:510:99:4926,0,4117 chrXVI 16683 . T A 1542.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.643;DP=428;Dels=0.00;FS=70.068;HaplotypeScore=99.1548;MLEAC=1;MLEAF=0.500;MQ=40.97;MQ0=20;MQRankSum=-9.768;QD=3.60;ReadPosRankSum=-0.462;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:313,115:428:99:1572,0,6735 chrXVI 16689 . G A 2623.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.938;DP=396;Dels=0.00;FS=97.172;HaplotypeScore=96.8013;MLEAC=1;MLEAF=0.500;MQ=41.13;MQ0=18;MQRankSum=-16.170;QD=6.62;ReadPosRankSum=-1.049;SB=-3.180e+02 GT:AD:DP:GQ:PL 0/1:205,190:396:99:2653,0,4551 chrXVI 16745 . A G 186.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;DP=233;Dels=0.00;FS=2.310;HaplotypeScore=11.0850;MLEAC=1;MLEAF=0.500;MQ=42.42;MQ0=1;MQRankSum=-9.388;QD=0.80;ReadPosRankSum=0.829;SB=-1.730e+02 GT:AD:DP:GQ:PL 0/1:146,87:233:99:216,0,3661 chrXVI 16749 . A C 365.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.178;DP=246;Dels=0.00;FS=2.225;HaplotypeScore=15.8171;MLEAC=1;MLEAF=0.500;MQ=42.75;MQ0=1;MQRankSum=-8.257;QD=1.48;ReadPosRankSum=0.291;SB=-1.870e+02 GT:AD:DP:GQ:PL 0/1:144,100:246:99:395,0,3537 chrXVI 16931 . A G 1166.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;DP=208;Dels=0.00;FS=29.595;HaplotypeScore=161.7680;MLEAC=1;MLEAF=0.500;MQ=48.67;MQ0=0;MQRankSum=-4.021;QD=5.61;ReadPosRankSum=-0.955;SB=-2.320e+02 GT:AD:DP:GQ:PL 0/1:87,86:207:99:1196,0,591 chrXVI 16980 . T A 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=206;Dels=0.00;FS=2.603;HaplotypeScore=37.4941;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=1.126;QD=18.16;ReadPosRankSum=0.924;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:3741,367,0 chrXVI 17013 . A T 122.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.158;DP=196;Dels=0.03;FS=91.511;HaplotypeScore=29.7210;MLEAC=1;MLEAF=0.500;MQ=54.62;MQ0=1;MQRankSum=-0.150;QD=0.62;ReadPosRankSum=0.749;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,49:190:99:152,0,1287 chrXVI 17345 . G A 8222.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=29.5943;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=25.53;SB=-3.710e+03 GT:AD:DP:GQ:PL 1/1:0,320:321:99:8222,773,0 chrXVI 17412 . A T 8971.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.946;DP=374;Dels=0.00;FS=27.263;HaplotypeScore=11.6665;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;MQRankSum=-0.284;QD=23.99;ReadPosRankSum=4.174;SB=-3.712e+03 GT:AD:DP:GQ:PL 1/1:6,368:374:99:8971,851,0 chrXVI 17634 . T G 5898.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;DP=423;Dels=0.00;FS=5.779;HaplotypeScore=16.5510;MLEAC=1;MLEAF=0.500;MQ=54.13;MQ0=0;MQRankSum=-0.578;QD=13.94;ReadPosRankSum=0.395;SB=-2.983e+03 GT:AD:DP:GQ:PL 0/1:155,267:423:99:5898,0,2979 chrXVI 17750 . A G 2999.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.035;DP=403;Dels=0.00;FS=3.385;HaplotypeScore=20.7157;MLEAC=1;MLEAF=0.500;MQ=47.58;MQ0=5;MQRankSum=4.291;QD=7.44;ReadPosRankSum=2.178;SB=-1.527e+03 GT:AD:DP:GQ:PL 0/1:258,143:403:99:3029,0,5726 chrXVI 17787 . C T 2032.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.384;DP=369;Dels=0.00;FS=5.335;HaplotypeScore=29.3167;MLEAC=1;MLEAF=0.500;MQ=53.51;MQ0=4;MQRankSum=-6.874;QD=5.51;ReadPosRankSum=0.249;SB=-8.230e+02 GT:AD:DP:GQ:PL 0/1:253,113:369:99:2062,0,5526 chrXVI 19989 . G C 2637.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=24.1432;MLEAC=1;MLEAF=0.500;MQ=59.34;MQ0=0;MQRankSum=0.201;QD=10.63;ReadPosRankSum=0.179;SB=-1.517e+03 GT:AD:DP:GQ:PL 0/1:109,132:248:99:2667,0,1848 chrXVI 20209 . G A 2331.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.600;DP=195;Dels=0.00;FS=1.769;HaplotypeScore=13.5130;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=-1.776;QD=11.95;ReadPosRankSum=-0.493;SB=-1.237e+03 GT:AD:DP:GQ:PL 0/1:88,105:195:99:2361,0,1724 chrXVI 20330 . A G 2265.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.383;DP=217;Dels=0.00;FS=3.089;HaplotypeScore=20.6570;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=1.812;QD=10.44;ReadPosRankSum=0.150;SB=-1.041e+03 GT:AD:DP:GQ:PL 0/1:102,113:217:99:2295,0,2311 chrXVI 21970 . C A 2580.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.286;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=16.0735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.550;QD=10.93;ReadPosRankSum=-0.685;SB=-1.235e+03 GT:AD:DP:GQ:PL 0/1:113,119:236:99:2610,0,2413 chrXVI 22652 . A T 2643.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DP=310;Dels=0.00;FS=7.702;HaplotypeScore=30.1097;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=-1.339;QD=8.53;ReadPosRankSum=-0.629;SB=-1.218e+03 GT:AD:DP:GQ:PL 0/1:164,146:310:99:2673,0,3596 chrXVI 22824 . G A 2936.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.120;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=29.9520;MLEAC=1;MLEAF=0.500;MQ=57.40;MQ0=0;MQRankSum=-1.131;QD=9.06;ReadPosRankSum=-0.162;SB=-1.934e+03 GT:AD:DP:GQ:PL 0/1:159,162:324:99:2966,0,3471 chrXVI 22834 . A T 2806.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.437;DP=349;Dels=0.00;FS=4.049;HaplotypeScore=22.3137;MLEAC=1;MLEAF=0.500;MQ=57.32;MQ0=0;MQRankSum=-0.605;QD=8.04;ReadPosRankSum=0.946;SB=-1.879e+03 GT:AD:DP:GQ:PL 0/1:175,174:349:99:2836,0,3791 chrXVI 23447 . A G 2368.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;DP=288;Dels=0.00;FS=0.448;HaplotypeScore=15.9056;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-0.030;QD=8.22;ReadPosRankSum=-0.571;SB=-8.020e+02 GT:AD:DP:GQ:PL 0/1:152,134:288:99:2398,0,2913 chrXVI 23546 . G A 4403.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;DP=420;Dels=0.00;FS=1.141;HaplotypeScore=26.4351;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=-0.620;QD=10.48;ReadPosRankSum=-0.586;SB=-2.272e+03 GT:AD:DP:GQ:PL 0/1:201,216:420:99:4403,0,3885 chrXVI 24645 . G A 6621.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=16.8328;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.86;SB=-3.430e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:6621,631,0 chrXVI 25632 . A G 11504.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=417;Dels=0.00;FS=14.004;HaplotypeScore=18.9279;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.238;QD=27.59;ReadPosRankSum=2.959;SB=-4.240e+03 GT:AD:DP:GQ:PL 1/1:3,414:417:99:11504,1109,0 chrXVI 26069 . G C 426 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=20.50;MQ0=23;QD=6.98;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,57:61:45:459,45,0 chrXVI 26081 . G A 32.97 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.24;MQ0=0;QD=2.20;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:65,9,0 chrXVI 26104 . T C 622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=0;MQRankSum=-1.732;QD=13.23;ReadPosRankSum=1.659;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:66:655,66,0 chrXVI 26397 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=24.88;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3409,328,0 chrXVI 27131 . C T 3645.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.41;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3645,343,0 chrXVI 29749 . C T 4152.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4819;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.95;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4152,394,0 chrXVI 34248 . C G 3860.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.57;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3860,373,0 chrXVI 35776 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.2807;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.04;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3671,361,0 chrXVI 36977 . C T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.46;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3768,361,0 chrXVI 38391 . G A 4685.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.17;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4685,460,0 chrXVI 38896 . A C 1914 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.63;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1947,192,0 chrXVI 41286 . T C 6109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=253;Dels=0.00;FS=6.072;HaplotypeScore=15.0950;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.443;QD=24.15;ReadPosRankSum=2.923;SB=-3.609e+03 GT:AD:DP:GQ:PL 1/1:3,245:253:99:6109,598,0 chrXVI 45292 . C T 3823.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.03;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3823,361,0 chrXVI 46798 . G T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.3633;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=26.81;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3727,355,0 chrXVI 51430 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.83;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2869,283,0 chrXVI 51967 . T C 2881 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.61;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2914,292,0 chrXVI 52021 . C T 4205.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.9882;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.31;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4205,412,0 chrXVI 53481 . A G 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=160;Dels=0.00;FS=6.396;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.629;QD=26.26;ReadPosRankSum=1.710;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,156:160:99:4202,415,0 chrXVI 53867 . A G 5505.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.7880;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.58;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5505,532,0 chrXVI 55419 . C T 3880.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.22;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3880,382,0 chrXVI 55474 . G A 4432.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.3092;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4432,430,0 chrXVI 56475 . A G 96.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=16.09;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:129,12,0 chrXVI 56480 . C T 60.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=10.09;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:93,12,0 chrXVI 56481 . T C 60.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=10.09;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:93,12,0 chrXVI 56487 . G A 148.13 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=8.71;SB=-1.419e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:18:181,18,0 chrXVI 56490 . T G 147.13 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=8.65;SB=-1.419e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:18:180,18,0 chrXVI 56527 . A T 156.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=4;QD=7.10;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:4,18:22:18:189,18,0 chrXVI 56534 . G A 156.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=4;QD=7.10;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:4,18:22:18:189,18,0 chrXVI 56535 . C T 156.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=4;QD=7.10;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:4,18:22:18:189,18,0 chrXVI 56538 . A G 150.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=8.9720;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=4;QD=6.82;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:4,18:22:18:183,18,0 chrXVI 56540 . G T 151.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=8.9720;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=4;QD=6.87;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:4,18:22:18:184,18,0 chrXVI 56557 . T G 33.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=4;QD=2.60;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:4,9:13:6:65,6,0 chrXVI 56560 . A G 29.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=4;QD=2.29;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:4,9:13:6:61,6,0 chrXVI 56565 . T A 31.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=4;QD=2.44;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:4,9:13:6:63,6,0 chrXVI 62713 . G T 22.08 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=32.11;MQ0=1;MQRankSum=0.922;QD=2.76;ReadPosRankSum=1.495;SB=-4.963e-02 GT:AD:DP:GQ:PL 0/1:5,3:8:17:52,0,17 chrXVI 62716 . C A 32.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.532;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.7297;MLEAC=1;MLEAF=0.500;MQ=38.78;MQ0=1;MQRankSum=-1.768;QD=2.46;ReadPosRankSum=-2.239;SB=1.249e-04 GT:AD:DP:GQ:PL 0/1:3,9:13:40:62,0,40 chrXVI 62720 . A T 215.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;DP=39;Dels=0.00;FS=8.879;HaplotypeScore=3.3071;MLEAC=1;MLEAF=0.500;MQ=32.79;MQ0=1;MQRankSum=-1.209;QD=5.51;ReadPosRankSum=-1.471;SB=-2.610e+02 GT:AD:DP:GQ:PL 0/1:3,36:39:28:245,0,28 chrXVI 65188 . G A 7371.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.51;SB=-3.317e+03 GT:AD:DP:GQ:PL 1/1:0,287:289:99:7371,701,0 chrXVI 66527 . A G 4023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=159;Dels=0.00;FS=3.326;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=25.30;ReadPosRankSum=1.710;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:4023,394,0 chrXVI 67148 . T C 6772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=8.0408;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.590;QD=24.99;ReadPosRankSum=1.655;SB=-3.532e+03 GT:AD:DP:GQ:PL 1/1:1,269:271:99:6772,688,0 chrXVI 67558 . T C 4173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=154;Dels=0.00;FS=2.904;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.490;QD=27.10;ReadPosRankSum=2.401;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:4173,406,0 chrXVI 67723 . C A 4003.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=27.05;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4003,376,0 chrXVI 68882 . G C 4089.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.9153;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.24;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:4089,397,0 chrXVI 69311 . A T 1960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=85;Dels=0.00;FS=2.988;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.188;QD=23.06;ReadPosRankSum=2.392;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1993,192,0 chrXVI 69402 . T A 2271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=3.350;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.583;QD=24.42;ReadPosRankSum=1.658;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2304,219,0 chrXVI 70402 . A G 3714.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.1101;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.43;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3714,361,0 chrXVI 70567 . A C 5501.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=28.36;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:5501,532,0 chrXVI 71126 . T A 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=108;Dels=0.00;FS=8.061;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.649;QD=24.33;ReadPosRankSum=2.404;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2661,253,0 chrXVI 72276 . T C 3689.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.80;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3689,361,0 chrXVI 72506 . G T 5239.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.8590;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.33;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5239,517,0 chrXVI 72592 . T C 4926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=203;Dels=0.00;FS=4.622;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.277;QD=24.27;ReadPosRankSum=1.645;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,199:203:99:4926,472,0 chrXVI 72835 . C G 5308.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.2081;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=26.41;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:5308,517,0 chrXVI 72872 . T C 4837.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.9647;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=25.59;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4837,466,0 chrXVI 72884 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.91;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3964,391,0 chrXVI 73071 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=24.87;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3267,307,0 chrXVI 73213 . T G 1789 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=25.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1822,177,0 chrXVI 73217 . G A 1739 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=25.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1772,168,0 chrXVI 73288 . A T 160.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=14.56;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:193,18,0 chrXVI 73338 . C G 1436 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=28.72;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1469,141,0 chrXVI 74040 . G C 584 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=25.39;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:60:617,60,0 chrXVI 74198 . A T 66.51 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=11.5984;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=0.94;SB=-3.545e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:12:99,12,0 chrXVI 74327 . C T 6061.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.8378;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=28.06;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6061,580,0 chrXVI 74459 . C A 9437.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=26.5611;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=27.04;SB=-4.666e+03 GT:AD:DP:GQ:PL 1/1:0,347:349:99:9437,899,0 chrXVI 74884 . G C 2637 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=18.31;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2670,285,0 chrXVI 74885 . C T 2616 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=18.04;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2649,285,0 chrXVI 75051 . G A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.1612;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=26.35;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4242,412,0 chrXVI 75307 . G C 9055.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=6.4637;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=27.11;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,333:334:99:9055,872,0 chrXVI 75329 . T C 8347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=333;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.293;QD=25.07;ReadPosRankSum=2.375;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:2,329:333:99:8347,827,0 chrXVI 75355 . A G 6807.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=24.84;SB=-3.107e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6807,649,0 chrXVI 76123 . C T 3369.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.1357;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=26.95;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3369,322,0 chrXVI 76198 . C T 4671.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.7015;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.95;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4671,454,0 chrXVI 76550 . G A 3997.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.8013;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=18.59;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:3997,391,0 chrXVI 77440 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.86;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3331,334,0 chrXVI 78691 . T A 4103.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.17;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4103,391,0 chrXVI 79268 . C A 3827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.094;DP=166;Dels=0.00;FS=8.599;HaplotypeScore=14.1892;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.688;QD=23.05;ReadPosRankSum=0.481;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3827,342,0 chrXVI 79670 . T A 3490.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.48;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3490,343,0 chrXVI 80834 . T C 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.773;DP=147;Dels=0.00;FS=9.676;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.697;QD=25.27;ReadPosRankSum=2.911;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:3,143:147:99:3715,358,0 chrXVI 81157 . G A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0643;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.13;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3658,349,0 chrXVI 82074 . C G 5764.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=14.1845;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.43;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,241:246:99:5764,565,0 chrXVI 82177 . C T 4966.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.7749;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.14;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4966,475,0 chrXVI 82212 . G A 5328.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.6691;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.90;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:5328,505,0 chrXVI 82484 . G A 3030 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3063,292,0 chrXVI 83513 . G T 5064.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=18.3700;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.91;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5064,496,0 chrXVI 83595 . C T 7643.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=23.4988;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.36;SB=-4.138e+03 GT:AD:DP:GQ:PL 1/1:0,290:290:99:7643,728,0 chrXVI 84945 . G A 5371.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.2203;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.82;SB=-2.881e+03 GT:AD:DP:GQ:PL 1/1:0,204:208:99:5371,529,0 chrXVI 85843 . A G 5078.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.7021;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.542;QD=25.26;ReadPosRankSum=1.715;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:5078,499,0 chrXVI 89283 . T C 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=152;Dels=0.00;FS=2.588;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.407;QD=27.04;ReadPosRankSum=2.887;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:3,148:152:99:4110,397,0 chrXVI 90265 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.27;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3116,298,0 chrXVI 90431 . T C 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.613;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.604;QD=27.11;ReadPosRankSum=1.700;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2961,289,0 chrXVI 90760 . G A 3221.02 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.40;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3254,310,0 chrXVI 90904 . A T 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=4.002;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.813;QD=28.36;ReadPosRankSum=1.697;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2812,268,0 chrXVI 91018 . A G 2844 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7294;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.10;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2877,283,0 chrXVI 91219 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2814,274,0 chrXVI 91357 . C T 4506.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=27.14;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4506,436,0 chrXVI 91540 . T C 4319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=191;Dels=0.00;FS=4.191;HaplotypeScore=6.4427;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.164;QD=22.61;ReadPosRankSum=1.256;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:4319,415,0 chrXVI 91564 . G A 5091.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.36;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5091,481,0 chrXVI 91792 . A G 3394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=3.249;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.203;QD=25.91;ReadPosRankSum=1.653;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3394,337,0 chrXVI 91999 . T C 4055.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.83;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4055,388,0 chrXVI 92122 . A G 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.4597;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.658;QD=24.02;ReadPosRankSum=1.707;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3363,328,0 chrXVI 92131 . C T 3487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=1.314;QD=23.40;ReadPosRankSum=0.221;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3487,328,0 chrXVI 92515 . T A 3208 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.51;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3241,313,0 chrXVI 92608 . G A 3669.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.66;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3669,349,0 chrXVI 93103 . C A 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.360;DP=121;Dels=0.00;FS=4.015;HaplotypeScore=5.9428;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.703;QD=24.45;ReadPosRankSum=0.930;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2992,286,0 chrXVI 93137 . T A 3455.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.2511;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.59;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3455,319,0 chrXVI 93364 . G A 3964.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.3250;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.74;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3964,376,0 chrXVI 93505 . A G 5329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=232;Dels=0.00;FS=6.042;HaplotypeScore=14.5057;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.564;QD=22.97;ReadPosRankSum=2.916;SB=-3.016e+03 GT:AD:DP:GQ:PL 1/1:3,226:232:99:5329,529,0 chrXVI 93676 . G A 4648.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.99;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4648,442,0 chrXVI 93712 . T C 4344.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.35;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4344,436,0 chrXVI 93759 . G C 4245.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.54;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4245,409,0 chrXVI 93841 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.1152;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.59;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3532,343,0 chrXVI 93996 . A G 3543.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.13;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3543,343,0 chrXVI 94145 . G A 2421 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.21;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2454,235,0 chrXVI 94218 . T C 2610 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3018;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2643,256,0 chrXVI 95563 . A C 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=134;Dels=0.00;FS=2.935;HaplotypeScore=10.4608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.527;QD=22.54;ReadPosRankSum=2.339;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3053,301,0 chrXVI 95804 . A G 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=120;Dels=0.00;FS=10.539;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.160;QD=26.40;ReadPosRankSum=2.908;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:3201,316,0 chrXVI 96457 . T A 4940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.695;QD=26.56;ReadPosRankSum=1.658;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4940,472,0 chrXVI 97006 . T C 4875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=205;Dels=0.00;FS=9.160;HaplotypeScore=14.7746;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.270;QD=23.78;ReadPosRankSum=2.878;SB=-2.951e+03 GT:AD:DP:GQ:PL 1/1:3,202:205:99:4875,472,0 chrXVI 97582 . A G 1237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=124;Dels=0.00;FS=3.621;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=21.65;MQ0=2;MQRankSum=-1.732;QD=9.98;ReadPosRankSum=1.675;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:1270,123,0 chrXVI 97609 . A G 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.41;MQ0=4;QD=0.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,104:104:6:57,6,0 chrXVI 97621 . T C 360 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=2;QD=3.10;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:42:393,42,0 chrXVI 97633 . C T 872 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=29.05;MQ0=2;QD=7.33;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:90:905,90,0 chrXVI 98068 . T C 4804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=196;Dels=0.00;FS=6.314;HaplotypeScore=11.9291;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.435;QD=24.51;ReadPosRankSum=2.374;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4804,469,0 chrXVI 98236 . A G 4287.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=17.0509;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.69;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4287,424,0 chrXVI 98320 . T C 4155.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.4256;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.16;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4155,400,0 chrXVI 98464 . C T 4002.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6130;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=26.33;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:4002,376,0 chrXVI 98717 . G A 3479.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=28.28;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3479,325,0 chrXVI 98825 . A T 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.1143;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=-1.160;QD=25.22;ReadPosRankSum=1.698;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2631,253,0 chrXVI 98881 . G T 3137 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=15.1733;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=26.58;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:3170,301,0 chrXVI 98916 . A C 3204 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=27.62;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3237,316,0 chrXVI 98933 . T C 3154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=1.135;QD=26.96;ReadPosRankSum=1.702;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:3187,313,0 chrXVI 99028 . C G 2631 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=109.0811;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=22.49;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2664,273,0 chrXVI 99055 . G A 2673 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.9736;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=20.56;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2706,262,0 chrXVI 99062 . C T 2643 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=19.72;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2676,259,0 chrXVI 99097 . A G 2671 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=20.39;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2704,262,0 chrXVI 99124 . A G 2760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-1.732;QD=19.71;ReadPosRankSum=1.707;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2793,274,0 chrXVI 99139 . C T 3419.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=23.58;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3419,334,0 chrXVI 99211 . G C 3292.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=23.02;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3292,325,0 chrXVI 99227 . T A 2677 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=18.99;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2710,276,0 chrXVI 99253 . C G 2370 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=19.27;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2403,240,0 chrXVI 99260 . A C 2228 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=19.21;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2261,222,0 chrXVI 99402 . C A 3905.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=15.6026;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=27.31;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3905,373,0 chrXVI 99579 . T C 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=-0.297;QD=19.66;ReadPosRankSum=1.707;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2786,282,0 chrXVI 99582 . A C 2785 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.5441;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=19.61;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:2818,283,0 chrXVI 99598 . G A 3515.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.8220;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.68;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3515,337,0 chrXVI 100197 . T C 3429.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=25.98;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3429,343,0 chrXVI 100419 . T C 4350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=15.9653;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.526;QD=27.36;ReadPosRankSum=1.688;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:4350,430,0 chrXVI 100535 . G A 4765.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=25.76;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4765,469,0 chrXVI 100561 . G A 4297.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.74;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4297,406,0 chrXVI 101471 . T A 1710 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=25.15;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1743,165,0 chrXVI 101504 . G A 1780 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.12;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1813,174,0 chrXVI 101698 . C T 2474 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=26.60;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2507,246,0 chrXVI 101755 . A G 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.329;DP=137;Dels=0.00;FS=13.881;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=2.196;QD=27.12;ReadPosRankSum=3.355;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:4,132:137:99:3716,364,0 chrXVI 101782 . C T 4333.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=27.78;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4333,412,0 chrXVI 101890 . C T 3975.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.32;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3975,394,0 chrXVI 101962 . T C 6136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=234;Dels=0.00;FS=2.565;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.658;QD=26.22;ReadPosRankSum=2.935;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:3,229:234:99:6136,595,0 chrXVI 102121 . G A 6969.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=27.88;SB=-3.587e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:6969,659,0 chrXVI 102244 . A C 4397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.067;DP=189;Dels=0.00;FS=10.822;HaplotypeScore=14.9561;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.387;QD=23.26;ReadPosRankSum=4.128;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:6,181:189:99:4397,454,0 chrXVI 102331 . T C 4132.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.01;FS=0.000;HaplotypeScore=7.0447;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.30;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4132,403,0 chrXVI 102343 . G T 3951.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.79;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3951,376,0 chrXVI 102370 . C T 3672.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5427;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.47;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3672,349,0 chrXVI 102421 . A G 4139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=174;Dels=0.00;FS=7.479;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.650;QD=23.79;ReadPosRankSum=2.335;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:4139,403,0 chrXVI 102546 . A G 4528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=177;Dels=0.00;FS=10.793;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.994;QD=25.58;ReadPosRankSum=2.914;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:3,172:177:99:4528,433,0 chrXVI 102652 . T C 5031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=192;Dels=0.00;FS=3.388;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.433;QD=26.20;ReadPosRankSum=1.714;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:5031,499,0 chrXVI 102792 . T C 4609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=183;Dels=0.00;FS=9.768;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.929;QD=25.19;ReadPosRankSum=2.962;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:3,180:183:99:4609,445,0 chrXVI 102899 . A G 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=151;Dels=0.00;FS=3.033;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.221;QD=25.21;ReadPosRankSum=2.384;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3807,370,0 chrXVI 102946 . G C 4006.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5619;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=28.01;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:4006,388,0 chrXVI 103007 . A C 3395.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.94;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3395,331,0 chrXVI 103016 . A T 3082 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.26;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3115,315,0 chrXVI 103137 . A G 4624.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.2352;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=26.42;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4624,448,0 chrXVI 103531 . T C 4204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=194;Dels=0.00;FS=10.648;HaplotypeScore=4.4443;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=0.439;QD=21.67;ReadPosRankSum=2.411;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4204,409,0 chrXVI 103537 . G A 4150.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.96;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4150,397,0 chrXVI 103612 . C T 3521.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.45;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3521,349,0 chrXVI 103942 . C T 4535.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.4537;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.91;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4535,448,0 chrXVI 104047 . G A 6388.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=10.9899;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.62;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6388,607,0 chrXVI 104203 . T C 4186.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.9141;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=26.66;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4186,412,0 chrXVI 104284 . A G 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=136;Dels=0.00;FS=8.573;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.419;QD=25.32;ReadPosRankSum=2.305;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3443,346,0 chrXVI 104305 . T C 3507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;DP=130;Dels=0.00;FS=2.580;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.539;QD=26.98;ReadPosRankSum=2.852;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:3,126:130:99:3507,340,0 chrXVI 104428 . C T 4832.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=25.70;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4832,466,0 chrXVI 104443 . T C 4407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-0.081;QD=25.62;ReadPosRankSum=1.672;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4407,433,0 chrXVI 104754 . T C 558 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=27.90;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:57:591,57,0 chrXVI 104784 . C T 460 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=24.21;SB=-6.622e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:48:493,48,0 chrXVI 104905 . A T 125.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:158,15,0 chrXVI 105267 . C T 5149.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.5887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=25.00;SB=-3.059e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5149,484,0 chrXVI 105282 . C T 4355.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.7853;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=23.93;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4355,412,0 chrXVI 105285 . C T 4287.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.6520;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=24.64;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4287,403,0 chrXVI 105527 . G A 1844 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=15.0758;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=19.62;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1877,180,0 chrXVI 105791 . G C 3924.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=26.34;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3924,382,0 chrXVI 105814 . A G 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.8857;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=-0.981;QD=15.22;ReadPosRankSum=2.839;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:2407,296,0 chrXVI 105817 . T A 2364 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=2.6927;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=15.55;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2397,293,0 chrXVI 105834 . A C 3845.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=24.03;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3845,382,0 chrXVI 105948 . T C 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=172;Dels=0.00;FS=5.710;HaplotypeScore=2.6141;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;MQRankSum=1.614;QD=21.48;ReadPosRankSum=2.959;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:3694,364,0 chrXVI 105953 . G A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=22.50;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3825,364,0 chrXVI 105960 . T C 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=181;Dels=0.00;FS=5.884;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;MQRankSum=-0.717;QD=20.62;ReadPosRankSum=2.961;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:3733,367,0 chrXVI 105969 . A T 3387.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=19.03;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3387,322,0 chrXVI 106014 . A C 3398.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=19.76;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3398,337,0 chrXVI 106082 . C T 4466.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=28.45;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:4466,433,0 chrXVI 106109 . C T 4949.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.7878;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=27.65;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4949,475,0 chrXVI 106351 . T C 5986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=230;Dels=0.00;FS=5.402;HaplotypeScore=13.9093;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.166;QD=26.03;ReadPosRankSum=2.961;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:3,227:230:99:5986,589,0 chrXVI 106450 . G A 6763.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=18.7095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.94;SB=-3.254e+03 GT:AD:DP:GQ:PL 1/1:0,248:251:99:6763,643,0 chrXVI 106600 . G A 8178.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=12.8156;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.88;SB=-4.075e+03 GT:AD:DP:GQ:PL 1/1:0,316:316:99:8178,803,0 chrXVI 106651 . T C 6582.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=8.8729;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.74;SB=-3.689e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6582,646,0 chrXVI 106953 . C A 4804.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=27.77;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4804,460,0 chrXVI 106996 . G A 3936.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=26.78;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3936,370,0 chrXVI 107325 . C T 6896.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=29.47;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:6896,659,0 chrXVI 107437 . A G 5224.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=26.12;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5224,529,0 chrXVI 107490 . A G 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=156;Dels=0.00;FS=5.210;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=-1.110;QD=20.30;ReadPosRankSum=1.710;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3200,313,0 chrXVI 107496 . T C 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=215;Dels=0.00;FS=3.092;HaplotypeScore=7.9499;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-0.987;QD=13.29;ReadPosRankSum=1.684;SB=-3.019e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:2891,286,0 chrXVI 107538 . G A 2418 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=12.8756;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=9.09;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:2451,237,0 chrXVI 107715 . G A 4166.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.93;SB=-2.948e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4166,400,0 chrXVI 107736 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.6696;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=18.76;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3377,328,0 chrXVI 107814 . T A 5787.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=8.9130;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.32;SB=-3.280e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5787,556,0 chrXVI 108230 . A G 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=130;Dels=0.00;FS=6.688;HaplotypeScore=10.5492;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.829;QD=23.86;ReadPosRankSum=2.392;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:3135,307,0 chrXVI 108300 . A G 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.722;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.682;QD=25.21;ReadPosRankSum=1.707;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3530,361,0 chrXVI 108350 . T C 3352.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.5445;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=24.47;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3352,331,0 chrXVI 108820 . G A 4459.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.5181;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.54;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4459,427,0 chrXVI 108924 . C T 4129.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.81;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4129,400,0 chrXVI 108940 . C T 4093.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=22.49;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4093,385,0 chrXVI 108966 . G A 3488.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.28;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3488,328,0 chrXVI 109104 . G A 4164.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.93;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4164,406,0 chrXVI 110058 . T C 4401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.6370;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.280;QD=27.17;ReadPosRankSum=1.689;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:4401,439,0 chrXVI 110256 . C A 4841.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.89;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4841,478,0 chrXVI 110310 . A G 4556.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.4444;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.85;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4556,454,0 chrXVI 110345 . G A 4292.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.86;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4292,406,0 chrXVI 110658 . C T 6337.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=14.4023;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=27.67;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:6337,610,0 chrXVI 110758 . G A 6519.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=25.97;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:6519,628,0 chrXVI 110790 . A T 5488.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.86;SB=-3.033e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5488,520,0 chrXVI 110811 . C A 5324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=240;Dels=0.00;FS=3.159;HaplotypeScore=10.0113;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.975;QD=22.18;ReadPosRankSum=-0.902;SB=-3.431e+03 GT:AD:DP:GQ:PL 1/1:1,237:240:99:5324,508,0 chrXVI 110925 . T C 6306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=269;Dels=0.00;FS=4.870;HaplotypeScore=16.5345;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.876;QD=23.44;ReadPosRankSum=1.693;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:1,266:268:99:6306,619,0 chrXVI 110946 . A G 5556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=5.1430;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.867;QD=22.96;ReadPosRankSum=2.429;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:2,240:242:99:5556,541,0 chrXVI 111609 . T C 6249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=240;Dels=0.00;FS=11.040;HaplotypeScore=17.6870;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.752;QD=26.04;ReadPosRankSum=2.971;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:3,237:240:99:6249,613,0 chrXVI 111711 . A G 6300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=244;Dels=0.00;FS=4.308;HaplotypeScore=18.1994;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.087;QD=25.82;ReadPosRankSum=1.689;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:1,239:244:99:6300,628,0 chrXVI 111813 . C T 5947.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=19.9395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-3.250e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5947,559,0 chrXVI 111924 . C T 6656.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=8.9164;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.10;SB=-3.322e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:6656,649,0 chrXVI 111979 . T C 6029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=230;Dels=0.00;FS=4.154;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.794;QD=26.21;ReadPosRankSum=1.656;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:1,228:230:99:6029,583,0 chrXVI 112440 . C T 7247.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=12.0261;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.70;SB=-3.787e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:7247,683,0 chrXVI 112935 . T C 5108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=216;Dels=0.00;FS=12.280;HaplotypeScore=12.8289;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.667;QD=23.65;ReadPosRankSum=2.892;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:3,211:216:99:5108,508,0 chrXVI 113074 . G A 6844.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=16.0545;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.84;SB=-3.791e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:6844,658,0 chrXVI 113838 . C T 7147.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=19.1681;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.87;SB=-3.968e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:7147,685,0 chrXVI 113880 . T C 7849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.755;DP=294;Dels=0.00;FS=11.823;HaplotypeScore=18.9171;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.356;QD=26.70;ReadPosRankSum=3.798;SB=-3.935e+03 GT:AD:DP:GQ:PL 1/1:5,286:294:99:7849,767,0 chrXVI 114050 . G A 6530.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=26.65;SB=-3.719e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:6530,619,0 chrXVI 114105 . T A 7391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=280;Dels=0.00;FS=3.522;HaplotypeScore=15.1795;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.639;QD=26.40;ReadPosRankSum=1.720;SB=-3.716e+03 GT:AD:DP:GQ:PL 1/1:1,279:280:99:7391,704,0 chrXVI 114171 . A G 4419.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=21.56;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4419,445,0 chrXVI 114192 . A G 3738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;MQRankSum=-0.326;QD=21.99;ReadPosRankSum=1.712;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3738,367,0 chrXVI 114225 . T A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=20.05;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3409,331,0 chrXVI 114231 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=19.31;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3496,343,0 chrXVI 114414 . C T 4146.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=24.25;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4146,397,0 chrXVI 114421 . C T 4119.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=24.52;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4119,397,0 chrXVI 114437 . G A 4251.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.3068;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=24.02;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4251,412,0 chrXVI 115128 . T C 1963 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.94;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1996,192,0 chrXVI 115170 . G T 2475 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=26.33;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2508,241,0 chrXVI 115252 . G A 4282.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.9641;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=29.13;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:4282,403,0 chrXVI 115323 . C A 4652.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.56;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4652,451,0 chrXVI 116036 . C T 5699.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.9053;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=26.76;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5699,547,0 chrXVI 116082 . G A 5780.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.3881;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=24.60;SB=-3.339e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5780,550,0 chrXVI 116203 . C A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.4718;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.61;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3695,355,0 chrXVI 116214 . A G 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=166;Dels=0.00;FS=3.644;HaplotypeScore=13.9242;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-1.112;QD=17.28;ReadPosRankSum=1.711;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,162:166:99:2901,303,0 chrXVI 116308 . G C 4411.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=23.72;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4411,436,0 chrXVI 116322 . T C 4376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=180;Dels=0.00;FS=7.756;HaplotypeScore=5.6561;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.266;QD=24.31;ReadPosRankSum=2.409;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4376,427,0 chrXVI 116448 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.56;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3025,301,0 chrXVI 116499 . T C 2603 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.51;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2636,261,0 chrXVI 116689 . A G 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=5.988;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.992;QD=27.62;ReadPosRankSum=1.706;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3618,352,0 chrXVI 116904 . C T 3950.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.8369;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.65;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3950,370,0 chrXVI 116947 . T G 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=156;Dels=0.00;FS=4.886;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=1.642;QD=21.32;ReadPosRankSum=1.665;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3326,331,0 chrXVI 117148 . G A 2500 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=19.08;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2533,252,0 chrXVI 117201 . G A 808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.793;DP=170;Dels=0.00;FS=4.470;HaplotypeScore=200.9404;MLEAC=2;MLEAF=1.00;MQ=32.18;MQ0=0;MQRankSum=1.606;QD=4.75;ReadPosRankSum=-9.216;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:57,65:170:81:841,81,0 chrXVI 117204 . G A 799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.926;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=157.5718;MLEAC=2;MLEAF=1.00;MQ=31.95;MQ0=0;MQRankSum=-0.211;QD=4.73;ReadPosRankSum=-1.432;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:84:832,84,0 chrXVI 117213 . G C 420.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;DP=185;Dels=0.00;FS=19.490;HaplotypeScore=60.7903;MLEAC=1;MLEAF=0.500;MQ=31.94;MQ0=0;MQRankSum=-0.951;QD=2.27;ReadPosRankSum=-8.672;SB=-1.750e+02 GT:AD:DP:GQ:PL 0/1:138,47:185:80:450,0,80 chrXVI 117215 . A T 350.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.726;DP=191;Dels=0.00;FS=17.766;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.52;MQ0=0;MQRankSum=-2.065;QD=1.83;ReadPosRankSum=-8.480;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:146,45:191:83:380,0,83 chrXVI 117225 . C T 170.06 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.8600;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=0;QD=1.12;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:21:203,21,0 chrXVI 117230 . C T 232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=155;Dels=0.00;FS=3.010;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=35.76;MQ0=0;MQRankSum=-1.192;QD=1.50;ReadPosRankSum=1.215;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:27:265,27,0 chrXVI 117298 . A G 1967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=128;Dels=0.00;FS=2.709;HaplotypeScore=7.3307;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-0.567;QD=15.37;ReadPosRankSum=2.411;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2000,201,0 chrXVI 117481 . C T 4193.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=27.59;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4193,397,0 chrXVI 117985 . C T 4723.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.5348;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.39;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4723,451,0 chrXVI 118215 . T C 4689.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.95;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4689,460,0 chrXVI 118252 . T C 4143.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=26.06;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:4143,403,0 chrXVI 119014 . G A 3929.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.02;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3929,370,0 chrXVI 119106 . G A 3840.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=27.23;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3840,367,0 chrXVI 120608 . A G 4515.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=25.51;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4515,436,0 chrXVI 120832 . C T 5766.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=24.96;SB=-3.000e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5766,574,0 chrXVI 120838 . G C 5545.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=24.11;SB=-2.942e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5545,556,0 chrXVI 120844 . C T 5732.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=24.71;SB=-3.282e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5732,550,0 chrXVI 121129 . A G 3857.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.3936;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=21.79;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3857,382,0 chrXVI 121136 . C T 3761.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.1563;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.89;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3761,364,0 chrXVI 121193 . G A 3951.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.06;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3951,388,0 chrXVI 121484 . A G 1286 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.79;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1319,129,0 chrXVI 121557 . G A 1327 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;QD=25.04;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1360,126,0 chrXVI 121751 . G A 3573.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.70;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3573,361,0 chrXVI 121974 . A G 4350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=173;Dels=0.00;FS=2.580;HaplotypeScore=14.3194;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.473;QD=25.14;ReadPosRankSum=2.958;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:3,167:173:99:4350,430,0 chrXVI 122105 . A G 3637.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.64;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3637,349,0 chrXVI 122198 . T C 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.3179;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.485;QD=26.66;ReadPosRankSum=1.663;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:4025,388,0 chrXVI 122473 . T C 6356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=247;Dels=0.00;FS=5.377;HaplotypeScore=14.2469;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.337;QD=25.73;ReadPosRankSum=2.931;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:3,244:247:99:6356,613,0 chrXVI 122553 . T C 5270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.7051;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.150;QD=23.85;ReadPosRankSum=1.653;SB=-3.068e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:5270,523,0 chrXVI 122567 . A G 5511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=5.9354;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-0.785;QD=23.45;ReadPosRankSum=1.584;SB=-2.933e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5511,550,0 chrXVI 122768 . G A 5112.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.2493;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.69;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5112,514,0 chrXVI 122948 . A G 5358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=210;Dels=0.00;FS=3.424;HaplotypeScore=8.8534;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.008;QD=25.51;ReadPosRankSum=1.715;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:5358,535,0 chrXVI 123092 . G A 5630.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.2138;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.43;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5630,535,0 chrXVI 123188 . G A 3840.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.56;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3840,373,0 chrXVI 123251 . C T 4013.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4013,379,0 chrXVI 123366 . G A 3953.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.18;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3953,382,0 chrXVI 123705 . T C 6215.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.68;SB=-3.119e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:6215,601,0 chrXVI 123818 . T C 5040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=3.702;HaplotypeScore=19.2131;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=1.714;QD=25.33;ReadPosRankSum=1.714;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:1,196:199:99:5040,496,0 chrXVI 124031 . C T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=22.89;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3571,355,0 chrXVI 124049 . G A 3142 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=19.89;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3175,307,0 chrXVI 124058 . T C 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=159;Dels=0.00;FS=3.009;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;MQRankSum=-1.306;QD=18.35;ReadPosRankSum=2.419;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:2950,292,0 chrXVI 124079 . A T 2465 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=15.41;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2498,241,0 chrXVI 124091 . G A 2566 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=15.37;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2599,250,0 chrXVI 124217 . A G 5152.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.0509;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=26.02;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5152,508,0 chrXVI 124241 . A G 5132.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.87;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5132,496,0 chrXVI 124331 . G A 5484.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.0756;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=24.05;SB=-3.080e+03 GT:AD:DP:GQ:PL 1/1:0,223:228:99:5484,553,0 chrXVI 124436 . T C 6649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=262;Dels=0.00;FS=3.730;HaplotypeScore=14.5197;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.150;QD=25.38;ReadPosRankSum=1.719;SB=-3.303e+03 GT:AD:DP:GQ:PL 1/1:1,261:262:99:6649,655,0 chrXVI 124589 . G A 4526.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.73;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4526,430,0 chrXVI 124718 . T C 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=163;Dels=0.00;FS=3.013;HaplotypeScore=10.4068;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.144;QD=25.19;ReadPosRankSum=2.404;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:4106,403,0 chrXVI 124850 . T C 5405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.008;QD=26.89;ReadPosRankSum=2.425;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:5405,529,0 chrXVI 125264 . G A 6157.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=11.4197;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.23;SB=-3.548e+03 GT:AD:DP:GQ:PL 1/1:0,287:290:99:6157,604,0 chrXVI 125270 . C T 6386.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.57;SB=-3.968e+03 GT:AD:DP:GQ:PL 1/1:0,294:296:99:6386,607,0 chrXVI 125490 . T G 3993.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.8258;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.95;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3993,394,0 chrXVI 125654 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.67;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3011,301,0 chrXVI 125867 . G A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.02;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3408,334,0 chrXVI 125957 . C T 4883.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.57;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4883,469,0 chrXVI 126095 . T C 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=150;Dels=0.00;FS=3.603;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.965;QD=25.14;ReadPosRankSum=1.709;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3771,355,0 chrXVI 126544 . C T 163.06 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=12.54;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:21:196,21,0 chrXVI 126582 . A G 1502 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=27.31;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1535,150,0 chrXVI 126808 . C T 3884.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.90;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3884,379,0 chrXVI 126838 . A G 4744.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.1662;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.10;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4744,475,0 chrXVI 127009 . C A 5604.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=27.34;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5604,535,0 chrXVI 127048 . C A 5701.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.4760;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.11;SB=-3.183e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5701,565,0 chrXVI 127372 . G A 5577.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.5487;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=25.12;SB=-3.206e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5577,535,0 chrXVI 127391 . G A 5385.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=25.89;SB=-2.992e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:5385,511,0 chrXVI 127855 . C T 7149.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=17.2570;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.40;SB=-4.061e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:7149,686,0 chrXVI 127901 . C T 7242.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=16.8581;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.77;SB=-4.197e+03 GT:AD:DP:GQ:PL 1/1:0,278:281:99:7242,686,0 chrXVI 127985 . C T 5977.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.5287;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.45;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5977,571,0 chrXVI 128692 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=194;Dels=0.00;FS=4.365;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;MQRankSum=-1.339;QD=16.65;ReadPosRankSum=1.643;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3264,319,0 chrXVI 128710 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=13.88;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:3265,319,0 chrXVI 128722 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=2.5946;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;MQRankSum=0.582;QD=14.72;ReadPosRankSum=0.797;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:3326,319,0 chrXVI 128735 . C T 3928.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=10.3769;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=15.71;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:3928,370,0 chrXVI 129873 . G C 7236.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=19.7553;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=26.03;SB=-3.696e+03 GT:AD:DP:GQ:PL 1/1:0,275:278:99:7236,706,0 chrXVI 132625 . A G 1716 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=24.87;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1749,177,0 chrXVI 132681 . G T 1552 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=19.16;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1585,156,0 chrXVI 132683 . C T 1668 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=21.11;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1701,162,0 chrXVI 132693 . C T 1738 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=20.69;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1771,171,0 chrXVI 132779 . C A 3344.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.3698;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=26.54;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3344,328,0 chrXVI 132838 . A C 3052 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.48;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3085,304,0 chrXVI 132855 . T C 2730 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.6487;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=24.59;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2763,271,0 chrXVI 132909 . A G 2125 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.50;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2158,216,0 chrXVI 132915 . A G 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=3.979;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=-0.087;QD=19.79;ReadPosRankSum=1.646;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2427,237,0 chrXVI 133186 . G A 7364.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=13.7868;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=26.30;SB=-3.327e+03 GT:AD:DP:GQ:PL 1/1:0,277:280:99:7364,707,0 chrXVI 133388 . C G 5167.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=21.00;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5167,514,0 chrXVI 133393 . G A 5252.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=21.35;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5252,493,0 chrXVI 134182 . G A 4751.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.78;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4751,448,0 chrXVI 135960 . T C 1937 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=126;Dels=0.00;FS=19.956;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=25.64;MQ0=26;MQRankSum=1.627;QD=15.37;ReadPosRankSum=1.662;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:1970,189,0 chrXVI 138394 . C T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=29.38;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3320,319,0 chrXVI 141321 . A G 6268.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.34;SB=-3.558e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6268,607,0 chrXVI 145251 . A G 3982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.736;QD=27.27;ReadPosRankSum=1.708;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3982,382,0 chrXVI 145367 . T G 4225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.607;QD=27.44;ReadPosRankSum=1.665;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:4225,406,0 chrXVI 145885 . A G 3749.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1832;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.86;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3749,370,0 chrXVI 145943 . T C 5037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.699;DP=188;Dels=0.00;FS=11.480;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.125;QD=26.79;ReadPosRankSum=3.749;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:5,183:188:99:5037,490,0 chrXVI 146064 . C T 4932.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.10;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4932,487,0 chrXVI 146345 . T C 2744 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=24.72;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2777,268,0 chrXVI 147209 . C T 3468.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.68;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3468,340,0 chrXVI 150295 . C T 2885 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.47;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2918,277,0 chrXVI 155186 . A T 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.893;QD=26.79;ReadPosRankSum=1.678;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3429,328,0 chrXVI 157315 . T C 2653 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2686,265,0 chrXVI 162438 . A T 584 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.55;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:57:617,57,0 chrXVI 165213 . T C 4546.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.05;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4546,451,0 chrXVI 165244 . T C 4126.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.27;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:4126,403,0 chrXVI 167480 . A T 3409.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.83;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3409,334,0 chrXVI 167913 . C A 2193 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.41;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2226,210,0 chrXVI 168266 . G T 4124.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=28.44;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:4124,391,0 chrXVI 168362 . T C 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.210;DP=164;Dels=0.00;FS=6.597;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.622;QD=24.16;ReadPosRankSum=2.360;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3963,388,0 chrXVI 170718 . A G 2446 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2479,246,0 chrXVI 171221 . G A 4136.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.6273;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.37;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4136,400,0 chrXVI 171270 . A T 3021 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.36;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3054,295,0 chrXVI 171468 . G A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.2160;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=27.23;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3758,355,0 chrXVI 171630 . T C 4417.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.27;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4417,427,0 chrXVI 171671 . C T 4185.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.35;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:4185,394,0 chrXVI 171982 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1543,147,0 chrXVI 172786 . T C 4266.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4266,424,0 chrXVI 173535 . T G 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.080;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.210;QD=24.39;ReadPosRankSum=1.677;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3131,304,0 chrXVI 173979 . C T 2617 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=25.41;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2650,253,0 chrXVI 174059 . G A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=27.09;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3386,337,0 chrXVI 174782 . T C 2612 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=26.93;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2645,262,0 chrXVI 175312 . G A 6301.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.5608;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.81;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:6301,601,0 chrXVI 176092 . A T 4120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=162;Dels=0.00;FS=4.852;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.95;MQ0=0;MQRankSum=-0.321;QD=25.43;ReadPosRankSum=1.625;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4120,403,0 chrXVI 177590 . C T 3815.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.68;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3815,370,0 chrXVI 177989 . T A 2822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.334;QD=24.54;ReadPosRankSum=1.580;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2855,277,0 chrXVI 178167 . T C 3702.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.42;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3702,358,0 chrXVI 180404 . T C 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=4.032;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.587;QD=22.89;ReadPosRankSum=1.648;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2871,286,0 chrXVI 180436 . A G 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.090;QD=24.81;ReadPosRankSum=1.676;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:3134,304,0 chrXVI 180654 . G A 4523.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.7782;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=28.81;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4523,427,0 chrXVI 180789 . G T 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.442;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.5753;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.074;QD=25.59;ReadPosRankSum=-0.939;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:4631,439,0 chrXVI 180828 . A G 4349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.296;DP=181;Dels=0.00;FS=9.177;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.989;QD=24.03;ReadPosRankSum=3.402;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:4,177:181:99:4349,430,0 chrXVI 180851 . T C 4081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=174;Dels=0.00;FS=2.839;HaplotypeScore=12.0136;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.476;QD=23.45;ReadPosRankSum=2.421;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:4081,403,0 chrXVI 181861 . G A 4333.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4333,412,0 chrXVI 182927 . C T 1516 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.77;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1549,144,0 chrXVI 182943 . C G 1442 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.60;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1475,144,0 chrXVI 183111 . T C 1317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.455;QD=26.34;ReadPosRankSum=1.663;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1350,135,0 chrXVI 183385 . A G 4191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=168;Dels=0.00;FS=3.336;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.210;QD=24.95;ReadPosRankSum=1.690;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:4191,409,0 chrXVI 183482 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=6.118;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.920;QD=25.35;ReadPosRankSum=2.359;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3448,343,0 chrXVI 188827 . C T 1647 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=15.7174;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.09;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1680,162,0 chrXVI 188889 . T C 2124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.216;QD=22.36;ReadPosRankSum=1.695;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2157,213,0 chrXVI 190807 . G C 3733.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.10;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3733,361,0 chrXVI 191944 . C T 4398.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.3412;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4398,448,0 chrXVI 192771 . A G 1311 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1344,132,0 chrXVI 193862 . G A 5610.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=28.33;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5610,526,0 chrXVI 194152 . C T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=22.33;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3840,361,0 chrXVI 194161 . A G 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=174;Dels=0.00;FS=2.580;HaplotypeScore=3.7142;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-0.844;QD=21.62;ReadPosRankSum=2.960;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3762,358,0 chrXVI 194361 . T C 2758 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.7251;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.37;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2791,274,0 chrXVI 195694 . A C 3804.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.23;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3804,376,0 chrXVI 195730 . C G 3857.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=27.75;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3857,373,0 chrXVI 199138 . T C 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.604;QD=25.67;ReadPosRankSum=1.706;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3465,340,0 chrXVI 199576 . T A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.5293;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=28.54;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3339,331,0 chrXVI 199717 . C T 4555.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.59;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4555,442,0 chrXVI 199801 . T C 5500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=212;Dels=0.00;FS=3.072;HaplotypeScore=7.2898;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.714;QD=25.94;ReadPosRankSum=1.699;SB=-3.013e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:5500,544,0 chrXVI 199875 . G A 4319.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=23.47;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4319,406,0 chrXVI 199884 . C T 4237.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.4349;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=23.41;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4237,427,0 chrXVI 199941 . C G 4222.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.72;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4222,409,0 chrXVI 200253 . A G 4579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.3042;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.740;QD=25.44;ReadPosRankSum=1.693;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:4579,442,0 chrXVI 200431 . C T 3829.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.59;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3829,367,0 chrXVI 201616 . G A 6920.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=29.08;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:6920,658,0 chrXVI 201697 . T C 4123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=186;Dels=0.00;FS=4.159;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.028;QD=22.17;ReadPosRankSum=1.676;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4123,397,0 chrXVI 201914 . A G 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.301;QD=24.74;ReadPosRankSum=1.670;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:4157,415,0 chrXVI 205023 . C A 1783 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.11;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1816,180,0 chrXVI 206288 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=131;Dels=0.00;FS=6.677;HaplotypeScore=6.6988;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.122;QD=26.34;ReadPosRankSum=2.412;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3450,337,0 chrXVI 207364 . C T 7261.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=27.71;SB=-3.333e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:7261,704,0 chrXVI 208747 . G A 5391.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.43;SB=-2.844e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5391,514,0 chrXVI 210299 . C T 3012 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.89;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:3045,289,0 chrXVI 210433 . A G 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=100;Dels=0.00;FS=3.235;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.522;QD=25.13;ReadPosRankSum=1.697;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2546,252,0 chrXVI 210832 . C T 2526 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.46;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2559,247,0 chrXVI 211078 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.14;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3263,307,0 chrXVI 211190 . T A 2522 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7287;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.73;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2555,247,0 chrXVI 211577 . T A 366 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.05;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=0;QD=18.30;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:39:399,39,0 chrXVI 212773 . G A 1621 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1654,162,0 chrXVI 213303 . T A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.09;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3889,379,0 chrXVI 213411 . G A 3362.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.6478;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3362,319,0 chrXVI 213854 . G A 4893.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=27.03;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4893,463,0 chrXVI 214317 . T C 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.957;QD=28.10;ReadPosRankSum=1.684;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:4019,394,0 chrXVI 214358 . A C 3852.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.91;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3852,376,0 chrXVI 214407 . T C 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=117;Dels=0.00;FS=2.976;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.852;QD=23.65;ReadPosRankSum=1.461;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2800,261,0 chrXVI 214444 . A C 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.7032;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.693;QD=22.60;ReadPosRankSum=1.626;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2994,292,0 chrXVI 214474 . A T 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=2.965;HaplotypeScore=2.7702;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=1.033;QD=22.52;ReadPosRankSum=0.686;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3671,358,0 chrXVI 214497 . C G 4549.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.86;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4549,442,0 chrXVI 214791 . C T 4795.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=19.0270;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.98;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4795,457,0 chrXVI 215126 . A G 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=161;Dels=0.00;FS=2.970;HaplotypeScore=11.4201;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.192;QD=22.75;ReadPosRankSum=2.419;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3662,364,0 chrXVI 215183 . T C 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=156;Dels=0.00;FS=6.749;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.016;QD=23.75;ReadPosRankSum=2.402;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3705,355,0 chrXVI 215587 . G C 2182 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2215,210,0 chrXVI 216772 . G T 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.093;DP=129;Dels=0.00;FS=75.962;HaplotypeScore=28.2197;MLEAC=1;MLEAF=0.500;MQ=58.74;MQ0=0;MQRankSum=-0.147;QD=0.18;ReadPosRankSum=-2.169;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,23:129:53:53,0,1778 chrXVI 216785 . G T 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.345;DP=131;Dels=0.00;FS=122.267;HaplotypeScore=16.3404;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=-0.108;QD=0.12;ReadPosRankSum=-5.535;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,29:131:46:46,0,1832 chrXVI 222598 . G A 5862.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=17.5211;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=27.52;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:5862,550,0 chrXVI 222732 . C A 6404.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=17.8182;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.11;SB=-2.978e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:6404,631,0 chrXVI 224865 . C T 5931.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.13;SB=-3.447e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5931,565,0 chrXVI 225206 . T C 6967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=273;Dels=0.00;FS=3.783;HaplotypeScore=20.9479;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.219;QD=25.52;ReadPosRankSum=1.706;SB=-3.343e+03 GT:AD:DP:GQ:PL 1/1:1,269:273:99:6967,676,0 chrXVI 226103 . G C 1920 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.26;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1953,195,0 chrXVI 226571 . C A 5969.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=23.05;SB=-3.611e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5969,565,0 chrXVI 226573 . A C 5582.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=21.72;SB=-3.525e+03 GT:AD:DP:GQ:PL 1/1:0,254:257:99:5582,550,0 chrXVI 227032 . C T 5655.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-2.886e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:5655,538,0 chrXVI 227345 . C T 5374.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.7878;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=25.96;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5374,514,0 chrXVI 227499 . T C 4806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=185;Dels=0.00;FS=2.858;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=1.362;QD=25.98;ReadPosRankSum=2.329;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:4806,466,0 chrXVI 227828 . A G 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=119;Dels=0.00;FS=5.971;HaplotypeScore=11.9237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.871;QD=22.85;ReadPosRankSum=2.923;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2752,282,0 chrXVI 228799 . A G 4233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.1723;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.097;QD=23.78;ReadPosRankSum=1.713;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4233,415,0 chrXVI 228950 . G A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.0078;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.49;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3476,328,0 chrXVI 229981 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=3.641;HaplotypeScore=9.4382;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.006;QD=25.85;ReadPosRankSum=1.709;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3826,379,0 chrXVI 230687 . T A 2884 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2917,283,0 chrXVI 230852 . A T 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.983;QD=26.17;ReadPosRankSum=1.701;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2938,280,0 chrXVI 231052 . T C 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=127;Dels=0.00;FS=2.622;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=2.079;QD=26.04;ReadPosRankSum=2.411;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:3307,322,0 chrXVI 232619 . C T 4636.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.43;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4636,436,0 chrXVI 232790 . G C 4523.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.3893;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4523,454,0 chrXVI 233007 . G A 3890.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.83;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3890,379,0 chrXVI 233841 . C T 4029.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.9234;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.84;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4029,385,0 chrXVI 234054 . G A 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.238;QD=24.32;ReadPosRankSum=-0.874;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2733,249,0 chrXVI 234100 . A G 3150 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=25.61;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3183,316,0 chrXVI 234114 . C G 3289.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=24.92;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3289,325,0 chrXVI 234171 . C T 3033 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.5123;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=22.47;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3066,298,0 chrXVI 234188 . G A 2886 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=23.66;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2919,280,0 chrXVI 234189 . C A 2892 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=23.70;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2925,283,0 chrXVI 234323 . T A 2997 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=23.41;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3030,292,0 chrXVI 234333 . C T 2994 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=23.76;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3027,283,0 chrXVI 234336 . A T 2844 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=21.71;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2877,288,0 chrXVI 234405 . A G 3080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=3.201;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=1.212;QD=22.00;ReadPosRankSum=1.658;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3113,307,0 chrXVI 234527 . A G 4232.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=23.91;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4232,406,0 chrXVI 234528 . T C 4155.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=23.47;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4155,409,0 chrXVI 234591 . A G 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=3.215;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=1.195;QD=23.34;ReadPosRankSum=1.712;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4061,409,0 chrXVI 234789 . C T 4381.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.6456;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=26.08;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4381,421,0 chrXVI 235149 . A G 4118.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=3.866;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.837;QD=27.27;ReadPosRankSum=1.709;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:4118,409,0 chrXVI 235565 . G A 3642.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.9768;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.20;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3642,352,0 chrXVI 236129 . C T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.77;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3323,316,0 chrXVI 236142 . C A 3439.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=21.77;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3439,331,0 chrXVI 236348 . T C 4368.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=25.69;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4368,427,0 chrXVI 236363 . T C 4397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=184;Dels=0.00;FS=6.289;HaplotypeScore=5.0795;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=1.147;QD=23.90;ReadPosRankSum=2.395;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:2,179:184:99:4397,445,0 chrXVI 236471 . C A 4652.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.58;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4652,439,0 chrXVI 236844 . T A 5297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=203;Dels=0.00;FS=2.771;HaplotypeScore=7.6009;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-0.249;QD=26.09;ReadPosRankSum=2.377;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:5297,499,0 chrXVI 236868 . A T 4838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=198;Dels=0.00;FS=4.159;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.717;QD=24.43;ReadPosRankSum=1.645;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4838,460,0 chrXVI 236883 . G A 4585.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=22.59;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4585,439,0 chrXVI 236973 . A G 4725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.325;QD=27.79;ReadPosRankSum=1.712;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4725,460,0 chrXVI 237068 . C G 5673.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=26.39;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5673,553,0 chrXVI 237126 . G A 4514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.136;DP=186;Dels=0.00;FS=3.610;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=-1.080;QD=24.27;ReadPosRankSum=-0.317;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4514,409,0 chrXVI 237218 . C A 4262.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=25.67;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4262,415,0 chrXVI 237235 . G A 4441.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=26.92;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4441,424,0 chrXVI 237288 . A G 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-0.726;QD=21.60;ReadPosRankSum=1.687;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3369,334,0 chrXVI 237294 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=21.47;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3306,322,0 chrXVI 237332 . A G 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=121;Dels=0.00;FS=2.544;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.110;QD=23.65;ReadPosRankSum=2.941;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:3,117:121:99:2895,280,0 chrXVI 237340 . G A 2890 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=23.69;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2923,283,0 chrXVI 237387 . G A 3101 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.01;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3134,301,0 chrXVI 237501 . A T 2038 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=26.13;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2071,195,0 chrXVI 237745 . T C 3569.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5187;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=28.33;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3569,346,0 chrXVI 237880 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2878;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.703;QD=27.29;ReadPosRankSum=1.503;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:3329,322,0 chrXVI 238111 . T C 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.922;QD=26.86;ReadPosRankSum=1.710;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:4190,409,0 chrXVI 238341 . G A 3997.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3997,403,0 chrXVI 238578 . C T 2957 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.06;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2990,280,0 chrXVI 238845 . T C 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=3.178;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.425;QD=25.69;ReadPosRankSum=1.710;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:4084,400,0 chrXVI 239186 . C T 956 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.32;SB=-6.401e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:96:989,96,0 chrXVI 239629 . A T 3750.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.60;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3750,361,0 chrXVI 240215 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=23.27;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3561,337,0 chrXVI 240217 . G A 3502.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=23.19;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3502,331,0 chrXVI 240583 . G A 5018.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.73;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:5018,481,0 chrXVI 240681 . C G 3792.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.7181;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.31;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3792,376,0 chrXVI 240892 . T C 4644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=187;Dels=0.00;FS=3.001;HaplotypeScore=13.0171;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.180;QD=24.83;ReadPosRankSum=2.423;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:2,182:187:99:4644,457,0 chrXVI 240946 . A G 5012.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:5012,499,0 chrXVI 241053 . G C 4653.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=16.8144;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.15;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,180:185:99:4653,454,0 chrXVI 241467 . C T 4708.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.0763;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=25.59;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4708,460,0 chrXVI 241650 . T C 3673.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.02;FS=0.000;HaplotypeScore=38.0357;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=24.16;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3673,361,0 chrXVI 241683 . C A 2979 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=24.42;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3012,289,0 chrXVI 241702 . A G 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=134;Dels=0.00;FS=2.589;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.128;QD=23.69;ReadPosRankSum=2.903;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:3207,307,0 chrXVI 241801 . A G 4500.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.57;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4500,439,0 chrXVI 241902 . G A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=124.7569;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=22.49;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3800,364,0 chrXVI 241984 . T A 5112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.357;QD=27.05;ReadPosRankSum=1.677;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:5112,487,0 chrXVI 242019 . C G 4845.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.8353;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.23;SB=-2.705e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4845,475,0 chrXVI 242716 . A T 4816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.711;DP=184;Dels=0.00;FS=5.938;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.022;QD=26.17;ReadPosRankSum=2.940;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:4816,469,0 chrXVI 242761 . G A 4306.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.14;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4306,409,0 chrXVI 242835 . T C 3733.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.86;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3733,364,0 chrXVI 243021 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=3.185;HaplotypeScore=5.7294;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.505;QD=25.91;ReadPosRankSum=1.623;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3291,322,0 chrXVI 243265 . C T 4533.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.82;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4533,427,0 chrXVI 243433 . A G 4442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.681;QD=24.82;ReadPosRankSum=1.693;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4442,430,0 chrXVI 244785 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3189,313,0 chrXVI 245122 . T C 4423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=3.468;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.154;QD=24.44;ReadPosRankSum=1.578;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4423,445,0 chrXVI 245982 . A T 4613.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.14;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4613,436,0 chrXVI 247153 . C A 5198.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=28.88;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:5198,487,0 chrXVI 248123 . C T 5400.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=11.9447;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.34;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5400,520,0 chrXVI 248288 . C T 6656.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=13.6714;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.02;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:6656,637,0 chrXVI 248813 . G A 3802.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.69;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3802,361,0 chrXVI 248985 . C G 3851.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3851,379,0 chrXVI 249366 . G A 4662.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.34;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4662,442,0 chrXVI 249419 . A G 4555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.1160;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.495;QD=28.12;ReadPosRankSum=1.345;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:4555,445,0 chrXVI 252117 . G A 2939 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2702;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.72;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,106:110:99:2972,277,0 chrXVI 252372 . T A 4463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.4487;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.240;QD=23.49;ReadPosRankSum=1.677;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4463,427,0 chrXVI 252434 . A G 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=166;Dels=0.00;FS=2.864;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-2.003;QD=23.90;ReadPosRankSum=2.390;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3968,382,0 chrXVI 252501 . A T 6877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=13.4253;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.299;QD=26.66;ReadPosRankSum=1.705;SB=-3.368e+03 GT:AD:DP:GQ:PL 1/1:1,257:258:99:6877,667,0 chrXVI 252618 . C T 5075.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.76;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5075,487,0 chrXVI 253090 . G A 4682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.242;QD=24.39;ReadPosRankSum=1.514;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4682,451,0 chrXVI 253375 . C T 3099 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.30;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3132,301,0 chrXVI 253892 . T C 5896.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.30;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:0,229:233:99:5896,574,0 chrXVI 254117 . G A 4588.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4588,448,0 chrXVI 254530 . C T 2751 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.31;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2784,265,0 chrXVI 254741 . C T 2581 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.81;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2614,255,0 chrXVI 254778 . G A 2419 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=25.20;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2452,232,0 chrXVI 254813 . G A 2433 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.74;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2466,246,0 chrXVI 254822 . G A 2601 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=23.02;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2634,253,0 chrXVI 254974 . A G 4226.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2879;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.25;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4226,415,0 chrXVI 255750 . G C 4687.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.7453;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.25;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4687,457,0 chrXVI 255854 . T C 4329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.3318;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.430;QD=26.08;ReadPosRankSum=1.711;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:4329,427,0 chrXVI 256359 . T G 2890 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.06;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2923,286,0 chrXVI 256510 . T C 3712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=135;Dels=0.00;FS=2.724;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.047;QD=27.50;ReadPosRankSum=2.413;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3712,361,0 chrXVI 256731 . C T 2882 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2915,274,0 chrXVI 256827 . T A 2046 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2079,201,0 chrXVI 257921 . G A 8668.01 PASS AC=2;AF=1.00;AN=2;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=17.4879;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.49;SB=-3.539e+03 GT:AD:DP:GQ:PL 1/1:0,337:340:99:8668,851,0 chrXVI 257972 . C T 7884.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=13.3086;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.76;SB=-3.781e+03 GT:AD:DP:GQ:PL 1/1:0,305:306:99:7884,749,0 chrXVI 258098 . T C 9904.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=383;Dels=0.00;FS=3.137;HaplotypeScore=14.5095;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=1.651;QD=25.86;ReadPosRankSum=1.723;SB=-5.581e+03 GT:AD:DP:GQ:PL 1/1:1,382:383:99:9904,968,0 chrXVI 259711 . A G 3595.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.23;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3595,361,0 chrXVI 261137 . C G 1891 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=27.81;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1924,186,0 chrXVI 261638 . A G 1749 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=27.33;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1782,171,0 chrXVI 262228 . G A 5085.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=28.41;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:5085,487,0 chrXVI 262452 . T G 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=152;Dels=0.00;FS=4.144;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.655;QD=23.74;ReadPosRankSum=1.638;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,147:152:99:3609,358,0 chrXVI 262588 . G A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.2985;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=26.35;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3426,328,0 chrXVI 263263 . A G 4299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=176;Dels=0.00;FS=3.190;HaplotypeScore=10.5451;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.230;QD=24.43;ReadPosRankSum=1.652;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:2,172:176:99:4299,421,0 chrXVI 263569 . T A 5065.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.3072;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.45;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5065,481,0 chrXVI 263635 . C G 5187.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.7967;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:0,208:213:99:5187,514,0 chrXVI 263733 . A T 6321.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.6693;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=27.36;SB=-3.157e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:6321,598,0 chrXVI 264524 . A C 4505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=3.823;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.289;QD=27.30;ReadPosRankSum=1.711;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:4505,436,0 chrXVI 264882 . T A 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=176;Dels=0.00;FS=5.734;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.240;QD=19.89;ReadPosRankSum=1.673;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3500,334,0 chrXVI 264964 . C T 4390.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.9048;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.98;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4390,418,0 chrXVI 265153 . C T 3338.01 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=28.53;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:3338,316,0 chrXVI 266023 . C T 5394.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.6182;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.11;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5394,514,0 chrXVI 266858 . C G 4187.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.4473;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.88;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,179:183:99:4187,415,0 chrXVI 267269 . A T 5886.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=20.9174;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.37;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5886,559,0 chrXVI 267899 . C T 4882.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.39;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4882,463,0 chrXVI 268208 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.29;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3269,313,0 chrXVI 269012 . C T 4589.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.28;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4589,433,0 chrXVI 269345 . C T 3832.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.18;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3832,379,0 chrXVI 269803 . C T 4111.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.0897;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.87;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:4111,388,0 chrXVI 270158 . C T 3696.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3696,367,0 chrXVI 270630 . T C 5672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.550;QD=26.26;ReadPosRankSum=1.651;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:5672,550,0 chrXVI 270942 . G A 2675 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.67;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2708,259,0 chrXVI 270991 . T C 1657 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.01;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1690,165,0 chrXVI 271044 . A G 443 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=9.84;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:48:476,48,0 chrXVI 271054 . T A 570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;MQRankSum=-1.237;QD=11.18;ReadPosRankSum=2.354;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:57:603,57,0 chrXVI 271083 . T A 799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;MQRankSum=-0.610;QD=11.25;ReadPosRankSum=1.683;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:81:832,81,0 chrXVI 271095 . C T 953 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=12.22;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,77:78:96:986,96,0 chrXVI 271460 . C T 5057.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=27.63;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:5057,475,0 chrXVI 271555 . G A 5106.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=17.4865;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.40;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:5106,484,0 chrXVI 271666 . C T 5204.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.0403;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.14;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5204,496,0 chrXVI 272321 . T C 3842.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.95;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3842,379,0 chrXVI 272587 . T C 4419.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.26;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4419,430,0 chrXVI 272608 . T C 4841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=3.522;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.561;QD=23.39;ReadPosRankSum=1.699;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4841,469,0 chrXVI 272771 . C T 3452.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.0314;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.01;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3452,354,0 chrXVI 272942 . A G 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.358;QD=23.01;ReadPosRankSum=1.707;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3232,319,0 chrXVI 273874 . T C 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.244;DP=86;Dels=0.00;FS=10.461;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-1.095;QD=20.08;ReadPosRankSum=4.356;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:7,78:86:99:1760,171,0 chrXVI 273875 . T C 1757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.940;DP=89;Dels=0.00;FS=10.413;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.236;QD=19.74;ReadPosRankSum=4.290;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:7,82:89:99:1790,171,0 chrXVI 274031 . T C 2905 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=28.20;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2938,289,0 chrXVI 274407 . G A 5655.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.3055;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.94;SB=-3.200e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:5655,532,0 chrXVI 274932 . A C 3931.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.03;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3931,379,0 chrXVI 275246 . G A 4021.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4021,394,0 chrXVI 275321 . T C 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=127;Dels=0.00;FS=2.573;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.389;QD=26.63;ReadPosRankSum=2.945;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:3382,334,0 chrXVI 275387 . G A 3730.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=28.91;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:3730,352,0 chrXVI 275818 . G A 3604.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.1402;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=25.74;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3604,343,0 chrXVI 275836 . C A 3333.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=26.66;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3333,316,0 chrXVI 275926 . T C 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=94;Dels=0.00;FS=3.250;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.838;QD=26.31;ReadPosRankSum=1.695;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2506,247,0 chrXVI 276142 . A G 2634 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.31;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2667,259,0 chrXVI 276423 . G A 3876.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.67;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3876,385,0 chrXVI 276675 . T G 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=161;Dels=0.00;FS=3.176;HaplotypeScore=12.6856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.494;QD=21.99;ReadPosRankSum=1.710;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3540,355,0 chrXVI 276934 . G A 4287.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.4168;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=27.31;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4287,412,0 chrXVI 277086 . A G 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=135;Dels=0.00;FS=2.870;HaplotypeScore=13.4336;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.993;QD=20.41;ReadPosRankSum=2.413;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2789,268,0 chrXVI 277230 . A G 2994 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.34;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,119:123:99:3027,306,0 chrXVI 277302 . A G 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=142;Dels=0.00;FS=3.722;HaplotypeScore=10.3140;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.536;QD=25.30;ReadPosRankSum=1.707;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,138:142:99:3592,352,0 chrXVI 277512 . T C 3057 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0331;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.65;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3090,310,0 chrXVI 277547 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-1.591;QD=22.29;ReadPosRankSum=1.685;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3276,319,0 chrXVI 277562 . G T 3339.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.54;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3339,313,0 chrXVI 277807 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=26.72;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3393,322,0 chrXVI 278223 . T C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3967;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.478;QD=27.19;ReadPosRankSum=1.669;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2997,301,0 chrXVI 278872 . T C 5754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=211;Dels=0.00;FS=2.503;HaplotypeScore=15.2844;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=1.034;QD=27.27;ReadPosRankSum=2.134;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:3,207:211:99:5754,550,0 chrXVI 279235 . A G 4773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=183;Dels=0.01;FS=0.000;HaplotypeScore=19.1750;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.184;QD=26.08;ReadPosRankSum=1.674;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:1,178:182:99:4773,463,0 chrXVI 279259 . G C 4966.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=26.70;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4966,490,0 chrXVI 279412 . T C 4327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=170;Dels=0.00;FS=3.328;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.039;QD=25.45;ReadPosRankSum=1.630;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4327,424,0 chrXVI 279637 . A G 2136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.532;QD=16.82;ReadPosRankSum=2.391;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2169,213,0 chrXVI 279722 . A G 2522 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.79;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2555,250,0 chrXVI 279843 . C T 3732.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=18.5214;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.92;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3732,364,0 chrXVI 280007 . A G 5840.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=18.2812;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.79;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5840,562,0 chrXVI 280422 . A G 3968.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=26.99;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3968,385,0 chrXVI 280470 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=136;Dels=0.00;FS=9.877;HaplotypeScore=10.4621;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.120;QD=25.75;ReadPosRankSum=2.376;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:2,131:136:99:3502,337,0 chrXVI 280596 . T C 4423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=180;Dels=0.00;FS=2.802;HaplotypeScore=9.6558;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=0.307;QD=24.57;ReadPosRankSum=2.422;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4423,433,0 chrXVI 280623 . C A 5056.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=25.41;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5056,487,0 chrXVI 280692 . T G 5742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=221;Dels=0.00;FS=2.987;HaplotypeScore=8.2733;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.218;QD=25.98;ReadPosRankSum=2.394;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:2,218:221:99:5742,565,0 chrXVI 280860 . A G 3992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-0.163;QD=23.08;ReadPosRankSum=2.421;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3992,388,0 chrXVI 280872 . T C 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=160;Dels=0.00;FS=7.073;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-0.592;QD=23.44;ReadPosRankSum=1.688;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3750,367,0 chrXVI 281659 . T C 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.4088;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.536;QD=26.28;ReadPosRankSum=1.701;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,112:116:99:3082,304,0 chrXVI 281703 . G A 3619.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6572;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=24.96;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3619,343,0 chrXVI 281721 . T G 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.764;DP=158;Dels=0.00;FS=4.898;HaplotypeScore=15.1126;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.825;QD=23.31;ReadPosRankSum=3.794;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:5,152:158:99:3683,373,0 chrXVI 281838 . C A 7262.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=6.7618;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=27.00;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:7262,706,0 chrXVI 281885 . G T 5999.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=26.54;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5999,562,0 chrXVI 281895 . A G 4878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=203;Dels=0.00;FS=8.343;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-0.357;QD=24.03;ReadPosRankSum=2.316;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4878,484,0 chrXVI 281956 . C A 4557.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=22.79;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4557,439,0 chrXVI 281975 . G A 4910.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.7615;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.42;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4910,466,0 chrXVI 282264 . T C 2709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=115;Dels=0.00;FS=4.582;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.330;QD=23.56;ReadPosRankSum=1.639;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,111:115:99:2742,279,0 chrXVI 282326 . C G 3277.01 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.77;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:3277,325,0 chrXVI 282360 . A G 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.630;QD=27.28;ReadPosRankSum=1.669;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:3034,295,0 chrXVI 282453 . T G 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=111;Dels=0.00;FS=2.864;HaplotypeScore=7.5582;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.366;QD=25.04;ReadPosRankSum=2.405;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2812,274,0 chrXVI 282491 . T C 2653 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.03;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2686,265,0 chrXVI 282972 . T C 2296 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.32;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2329,225,0 chrXVI 283161 . G A 439 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.95;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:51:472,51,0 chrXVI 283162 . A T 414 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.71;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:48:447,48,0 chrXVI 283198 . G C 426 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=25.06;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:45:459,45,0 chrXVI 289247 . C T 2404 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.13;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2437,232,0 chrXVI 291046 . G A 3865.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3865,388,0 chrXVI 292699 . C G 2294 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=26.37;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2327,225,0 chrXVI 295944 . A G 6659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=277;Dels=0.00;FS=2.869;HaplotypeScore=16.9647;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.465;QD=24.04;ReadPosRankSum=2.388;SB=-3.319e+03 GT:AD:DP:GQ:PL 1/1:2,275:277:99:6659,646,0 chrXVI 298491 . T C 314 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.53;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:36:347,36,0 chrXVI 299678 . G T 2811 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.2512;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.13;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2844,277,0 chrXVI 299735 . A T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.5361;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.91;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3575,349,0 chrXVI 300745 . G A 5721.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.24;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5721,565,0 chrXVI 300944 . G A 4558.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.3023;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.32;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4558,451,0 chrXVI 301187 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.57;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3819,379,0 chrXVI 302738 . A G 2154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=2.339;QD=24.20;ReadPosRankSum=2.339;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:2187,210,0 chrXVI 303354 . C T 7088.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=19.1861;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.96;SB=-3.440e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:7088,683,0 chrXVI 304984 . A G 2569 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.14;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2602,250,0 chrXVI 310278 . T C 3625.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.53;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3625,355,0 chrXVI 310970 . A C 7058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=256;Dels=0.00;FS=4.119;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.527;QD=27.57;ReadPosRankSum=1.705;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:1,252:256:99:7058,676,0 chrXVI 312325 . C T 5377.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.4071;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.62;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5377,532,0 chrXVI 314443 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=4.028;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.603;QD=26.61;ReadPosRankSum=1.706;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3566,343,0 chrXVI 316017 . C G 4755.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4755,466,0 chrXVI 318049 . C T 3888.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=26.63;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3888,370,0 chrXVI 318072 . T G 4131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=3.093;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.294;QD=25.98;ReadPosRankSum=1.689;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4131,400,0 chrXVI 324393 . G C 2418 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.67;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2451,240,0 chrXVI 324441 . A G 3369.01 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=28.55;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3369,325,0 chrXVI 325231 . T C 4261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.235;QD=26.14;ReadPosRankSum=1.711;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:4261,418,0 chrXVI 328317 . G A 4902.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.6021;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.93;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4902,466,0 chrXVI 329486 . T C 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=109;Dels=0.00;FS=3.013;HaplotypeScore=7.1306;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.627;QD=26.30;ReadPosRankSum=2.404;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2900,283,0 chrXVI 330238 . A G 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=154;Dels=0.00;FS=2.815;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.036;QD=23.66;ReadPosRankSum=2.417;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3643,358,0 chrXVI 330424 . A G 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.2774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.482;QD=23.16;ReadPosRankSum=1.701;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2604,256,0 chrXVI 333067 . G C 1887 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1920,186,0 chrXVI 333238 . C T 3859.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.5301;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=27.18;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3859,367,0 chrXVI 334207 . A G 4252.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.3801;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.070;QD=24.44;ReadPosRankSum=1.672;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4252,415,0 chrXVI 334494 . A G 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.369;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.292;QD=23.89;ReadPosRankSum=1.705;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3043,301,0 chrXVI 337021 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.73;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:3300,316,0 chrXVI 338332 . G A 3557.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.59;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3557,340,0 chrXVI 338426 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4558;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.06;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3350,331,0 chrXVI 338429 . T C 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.177;DP=173;Dels=0.00;FS=2.356;HaplotypeScore=9.4182;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=1.146;QD=19.99;ReadPosRankSum=3.409;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:4,169:173:99:3458,337,0 chrXVI 338640 . A T 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.3071;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=1.100;QD=24.84;ReadPosRankSum=1.671;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4223,397,0 chrXVI 338828 . T C 2747 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=24.75;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2780,274,0 chrXVI 338953 . A G 2198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.520;QD=21.98;ReadPosRankSum=1.697;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2231,216,0 chrXVI 339175 . G A 3537.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=27.00;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3537,340,0 chrXVI 339202 . A G 3397.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=25.54;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3397,351,0 chrXVI 339231 . G T 3890.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=27.39;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3890,364,0 chrXVI 339275 . G T 3874.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.3972;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=26.53;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3874,370,0 chrXVI 339477 . C T 3094 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=19.83;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3127,313,0 chrXVI 339486 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=21.24;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3377,334,0 chrXVI 339516 . T A 3022 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.28;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3055,289,0 chrXVI 340393 . T C 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=15.8243;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.381;QD=23.44;ReadPosRankSum=1.710;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3703,367,0 chrXVI 341700 . C T 7364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.241;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=8.2454;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;MQRankSum=-0.372;QD=26.78;ReadPosRankSum=0.611;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:1,274:275:99:7364,700,0 chrXVI 341808 . T G 7233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.729;DP=285;Dels=0.00;FS=5.802;HaplotypeScore=18.2584;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.215;QD=25.38;ReadPosRankSum=1.870;SB=-3.665e+03 GT:AD:DP:GQ:PL 1/1:3,282:285:99:7233,694,0 chrXVI 342089 . T A 3144 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.82;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3177,298,0 chrXVI 348646 . A G 4884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=190;Dels=0.00;FS=4.330;HaplotypeScore=18.8624;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.158;QD=25.71;ReadPosRankSum=1.677;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,186:190:99:4884,487,0 chrXVI 349570 . C T 4496.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.7232;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=26.60;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4496,433,0 chrXVI 349595 . T C 4308.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.48;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4308,415,0 chrXVI 352228 . A C 4576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=184;Dels=0.00;FS=2.591;HaplotypeScore=13.8233;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.394;QD=24.87;ReadPosRankSum=2.396;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4576,445,0 chrXVI 352479 . C T 93.51 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=69.4216;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=1.13;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:12:126,12,0 chrXVI 352604 . T G 2528 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.89;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2561,244,0 chrXVI 352789 . G A 2835 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=26.75;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2868,271,0 chrXVI 352962 . A G 3208 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.08;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3241,325,0 chrXVI 353360 . A G 4606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.996;DP=166;Dels=0.00;FS=6.597;HaplotypeScore=8.2009;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.382;QD=27.75;ReadPosRankSum=1.955;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:4606,439,0 chrXVI 354703 . G C 4268.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4268,430,0 chrXVI 357842 . T C 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=121;Dels=0.00;FS=6.135;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-1.009;QD=22.83;ReadPosRankSum=2.940;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:3,113:121:99:2795,277,0 chrXVI 357853 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.60;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2771,271,0 chrXVI 357947 . T C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.637;QD=27.48;ReadPosRankSum=1.643;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:3248,319,0 chrXVI 358063 . C T 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2491;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.557;QD=24.68;ReadPosRankSum=1.220;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2896,286,0 chrXVI 358161 . G A 4310.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.28;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4310,406,0 chrXVI 359574 . T A 1739 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.95;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1772,171,0 chrXVI 359596 . G A 1505 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.81;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1538,147,0 chrXVI 362269 . G C 4376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.419;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.669;QD=26.05;ReadPosRankSum=1.252;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:4376,403,0 chrXVI 363570 . T C 4527.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.44;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4527,445,0 chrXVI 364396 . C T 4708.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.86;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4708,448,0 chrXVI 366437 . G T 4102.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=13.1061;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.80;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:4102,397,0 chrXVI 366673 . A G 4982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=187;Dels=0.00;FS=6.593;HaplotypeScore=17.1357;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.129;QD=26.64;ReadPosRankSum=2.409;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:2,179:187:99:4982,487,0 chrXVI 368069 . A G 4685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=195;Dels=0.00;FS=8.886;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.750;QD=24.03;ReadPosRankSum=3.414;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:4,188:195:99:4685,460,0 chrXVI 368095 . G A 4503.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=25.02;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4503,442,0 chrXVI 368135 . C T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.92;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3755,355,0 chrXVI 368308 . G A 4088.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=26.21;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4088,400,0 chrXVI 368611 . T G 4375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=175;Dels=0.00;FS=3.379;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.322;QD=25.00;ReadPosRankSum=1.631;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:1,171:175:99:4375,427,0 chrXVI 368905 . T C 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.015;QD=25.73;ReadPosRankSum=1.683;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3628,352,0 chrXVI 368962 . A G 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.0746;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=0.920;QD=22.61;ReadPosRankSum=1.711;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3686,355,0 chrXVI 368980 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=147;Dels=0.00;FS=2.858;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.328;QD=21.99;ReadPosRankSum=2.399;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3265,316,0 chrXVI 369001 . C T 3627.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.55;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3627,346,0 chrXVI 369255 . A G 4538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=167;Dels=0.00;FS=4.251;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=1.669;QD=27.17;ReadPosRankSum=1.711;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:4538,436,0 chrXVI 369350 . T C 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=3.082;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.625;QD=24.91;ReadPosRankSum=1.619;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3072,298,0 chrXVI 369476 . A G 3370.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.73;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3370,328,0 chrXVI 369483 . T C 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=135;Dels=0.00;FS=4.097;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-0.463;QD=22.23;ReadPosRankSum=1.706;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,130:135:99:3034,304,0 chrXVI 369585 . T G 2879 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.82;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2912,283,0 chrXVI 369665 . C T 3157 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=26.53;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3190,310,0 chrXVI 369748 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=26.30;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3189,316,0 chrXVI 370280 . A G 5160.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.2363;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.67;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:5160,505,0 chrXVI 370692 . C G 3991.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.4980;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.12;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:3991,385,0 chrXVI 370772 . T A 3867.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=20.9329;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.25;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3867,391,0 chrXVI 370936 . T C 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-0.125;QD=21.95;ReadPosRankSum=1.649;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,124:128:99:2842,280,0 chrXVI 370944 . C T 2883 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=21.68;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2916,286,0 chrXVI 371029 . C T 4575.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.29;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4575,433,0 chrXVI 371082 . T C 4532.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.05;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4532,448,0 chrXVI 371406 . G A 4991.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.0156;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.46;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4991,487,0 chrXVI 371445 . C T 5769.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.34;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:5769,562,0 chrXVI 371571 . T C 4507.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.23;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4507,436,0 chrXVI 371706 . T C 6299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=247;Dels=0.00;FS=2.556;HaplotypeScore=13.3191;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.749;QD=25.50;ReadPosRankSum=2.963;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:3,241:247:99:6299,616,0 chrXVI 372243 . A G 5655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=230;Dels=0.00;FS=2.710;HaplotypeScore=9.6783;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.959;QD=24.59;ReadPosRankSum=2.342;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:5655,550,0 chrXVI 372267 . C T 5596.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.0153;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=24.65;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5596,547,0 chrXVI 372742 . C T 8428.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=19.4484;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=26.42;SB=-3.840e+03 GT:AD:DP:GQ:PL 1/1:0,318:319:99:8428,791,0 chrXVI 373029 . C T 1225 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1258,117,0 chrXVI 373168 . A G 1579 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=28.71;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1612,156,0 chrXVI 373351 . T C 3337.01 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=27.58;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3337,325,0 chrXVI 373399 . A G 3350.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=25.38;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3350,334,0 chrXVI 373419 . T A 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=126;Dels=0.00;FS=10.463;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=2.288;QD=21.08;ReadPosRankSum=2.944;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2689,264,0 chrXVI 373422 . T A 2552 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=20.09;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2585,252,0 chrXVI 373522 . T C 2510 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=22.21;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2543,247,0 chrXVI 373560 . A T 1932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.642;QD=21.71;ReadPosRankSum=1.693;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1965,183,0 chrXVI 373641 . T G 1221 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=20.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1254,123,0 chrXVI 373674 . G A 1201 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.38;MQ0=0;QD=21.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1234,117,0 chrXVI 373847 . A G 2577 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6032;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=25.51;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,97:101:99:2610,259,0 chrXVI 373946 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=26.40;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3828,370,0 chrXVI 374061 . A G 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=3.563;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.414;QD=26.82;ReadPosRankSum=1.655;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3621,349,0 chrXVI 374261 . C T 4935.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.5022;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.88;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4935,460,0 chrXVI 375203 . C T 4419.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.8807;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.83;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4419,436,0 chrXVI 375533 . G A 3153 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8062;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=22.52;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3186,307,0 chrXVI 375534 . T A 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4271;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.442;QD=22.68;ReadPosRankSum=2.950;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3186,304,0 chrXVI 375693 . G A 4856.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.6663;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=26.39;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4856,481,0 chrXVI 376113 . C T 5465.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.9288;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=27.33;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5465,523,0 chrXVI 376180 . A G 5389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=3.428;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.527;QD=25.91;ReadPosRankSum=1.715;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:5389,532,0 chrXVI 376312 . G A 6262.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=12.5388;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.20;SB=-3.265e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:6262,613,0 chrXVI 376683 . A G 5047.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.42;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5047,490,0 chrXVI 376755 . G A 5424.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.08;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5424,517,0 chrXVI 377062 . T A 1705 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=19.83;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1738,168,0 chrXVI 377330 . A G 1569 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.36;MQ0=1;QD=28.02;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1602,162,0 chrXVI 377336 . C T 1487 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.15;MQ0=1;QD=29.16;SB=-6.401e+01 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1520,147,0 chrXVI 377648 . C T 2891 filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4782;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=16;QD=25.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2924,280,0 chrXVI 378124 . T C 1973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.098;DP=99;Dels=0.00;FS=3.009;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-2.324;QD=19.93;ReadPosRankSum=2.374;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2006,198,0 chrXVI 378130 . C A 2345 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=23.93;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2378,226,0 chrXVI 378223 . C T 3086 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=28.31;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:3119,298,0 chrXVI 378249 . C T 2184 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=22.52;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2217,210,0 chrXVI 378260 . C A 2122 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=23.07;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2155,210,0 chrXVI 378492 . T C 5247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=15.5568;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.483;QD=25.11;ReadPosRankSum=2.928;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:3,205:209:99:5247,517,0 chrXVI 378640 . G T 4702.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.7521;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=27.18;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4702,445,0 chrXVI 378721 . G A 5327.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.96;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5327,517,0 chrXVI 378794 . G A 4264.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.3896;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.87;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4264,406,0 chrXVI 378927 . T C 325 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;QD=5.60;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:36:358,36,0 chrXVI 378939 . C T 545 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=9.40;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:57:578,57,0 chrXVI 378951 . C T 760 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.20;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:72:793,72,0 chrXVI 379018 . C T 1071 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.42;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1104,111,0 chrXVI 379192 . T C 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;MQRankSum=0.081;QD=28.04;ReadPosRankSum=1.678;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3589,369,0 chrXVI 379218 . G A 4684.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=28.91;SB=-6.801e+01 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4684,445,0 chrXVI 379335 . C G 7477.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=18.6105;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.42;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,281:283:99:7477,739,0 chrXVI 379460 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=4.2685;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=9.32;SB=-3.941e+03 GT:AD:DP:GQ:PL 1/1:0,293:294:99:2773,262,0 chrXVI 379477 . G T 3973.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=7.5088;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=13.03;SB=-3.871e+03 GT:AD:DP:GQ:PL 1/1:0,305:305:99:3973,379,0 chrXVI 379573 . C T 7254.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=20.4564;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.86;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,299:304:99:7254,715,0 chrXVI 379971 . T C 4830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=191;Dels=0.00;FS=3.029;HaplotypeScore=11.8579;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.752;QD=25.29;ReadPosRankSum=2.411;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4830,466,0 chrXVI 380250 . A G 5385.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.3721;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=25.89;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5385,517,0 chrXVI 380502 . G A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=24.26;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4076,388,0 chrXVI 380513 . T C 3815.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=22.98;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3815,373,0 chrXVI 380527 . C T 3692.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=23.37;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3692,352,0 chrXVI 380674 . G C 3351.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=15.0158;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.11;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3351,328,0 chrXVI 380801 . A G 4651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=190;Dels=0.00;FS=5.315;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.639;QD=24.48;ReadPosRankSum=1.714;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,186:190:99:4651,460,0 chrXVI 380806 . T C 4579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=187;Dels=0.00;FS=2.562;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=1.898;QD=24.49;ReadPosRankSum=2.963;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:4579,442,0 chrXVI 381121 . T C 4166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=4.532;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.231;QD=26.20;ReadPosRankSum=1.710;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4166,397,0 chrXVI 381495 . G C 2288 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,93:99:99:2321,228,0 chrXVI 381702 . C T 1462 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1495,138,0 chrXVI 381741 . G A 2110 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2143,207,0 chrXVI 381922 . A C 2431 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=27.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2464,235,0 chrXVI 382024 . G A 1966 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.57;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,70:74:99:1999,204,0 chrXVI 382120 . A C 3527.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.92;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3527,352,0 chrXVI 382203 . G A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=25.25;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3384,322,0 chrXVI 382213 . A G 3388.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=26.26;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3388,328,0 chrXVI 382287 . T C 3679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=142;Dels=0.00;FS=3.010;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.615;QD=25.91;ReadPosRankSum=2.415;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3679,358,0 chrXVI 382450 . A G 5489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=210;Dels=0.00;FS=10.595;HaplotypeScore=19.0055;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.529;QD=26.14;ReadPosRankSum=2.401;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:2,200:210:99:5489,556,0 chrXVI 382708 . G A 8114.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=17.1841;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=26.26;SB=-3.244e+03 GT:AD:DP:GQ:PL 1/1:0,309:309:99:8114,773,0 chrXVI 382832 . C A 5832.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=16.6130;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.27;SB=-3.259e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5832,553,0 chrXVI 382997 . A G 4896.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.5903;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.32;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4896,481,0 chrXVI 383245 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=19.0008;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.800;QD=24.84;ReadPosRankSum=2.344;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3502,337,0 chrXVI 383361 . T C 2358 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.68;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2391,240,0 chrXVI 383778 . A G 4669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=187;Dels=0.00;FS=3.031;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.387;QD=24.97;ReadPosRankSum=2.384;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4669,460,0 chrXVI 383928 . G A 3830.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.9859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,163:167:99:3830,364,0 chrXVI 384709 . A G 1183 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.29;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1216,120,0 chrXVI 386168 . T C 4285.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.5068;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.32;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4285,421,0 chrXVI 386960 . C T 3569.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.6888;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=22.17;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3569,337,0 chrXVI 386966 . T G 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=162;Dels=0.00;FS=9.781;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=0.360;QD=21.47;ReadPosRankSum=1.193;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:3478,337,0 chrXVI 387009 . C T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.10;SB=-2.888e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4375,412,0 chrXVI 387029 . A T 5212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=220;Dels=0.00;FS=3.090;HaplotypeScore=5.1447;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=1.086;QD=23.69;ReadPosRankSum=1.685;SB=-3.231e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5212,490,0 chrXVI 387248 . C T 5189.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=25.07;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5189,496,0 chrXVI 388241 . T A 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.2792;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.911;QD=26.19;ReadPosRankSum=1.655;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3535,352,0 chrXVI 388922 . A T 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=154;Dels=0.00;FS=5.676;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.424;QD=25.74;ReadPosRankSum=2.874;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3964,379,0 chrXVI 388968 . T G 4559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=174;Dels=0.00;FS=2.998;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.179;QD=26.20;ReadPosRankSum=2.365;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:4559,451,0 chrXVI 389144 . A G 4028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.487;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.530;QD=25.99;ReadPosRankSum=1.642;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:4028,385,0 chrXVI 389519 . T C 6589.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.87;SB=-3.717e+03 GT:AD:DP:GQ:PL 1/1:0,271:276:99:6589,652,0 chrXVI 389620 . C T 4800.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.43;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4800,490,0 chrXVI 389644 . T A 5542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=14.1537;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=1.045;QD=23.89;ReadPosRankSum=1.642;SB=-3.033e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5542,532,0 chrXVI 389702 . A G 6067.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=25.82;SB=-3.322e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:6067,592,0 chrXVI 389817 . A G 4092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=217;Dels=0.00;FS=7.567;HaplotypeScore=20.5425;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.365;QD=18.86;ReadPosRankSum=2.392;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:2,210:217:99:4092,409,0 chrXVI 389858 . C T 4488.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=16.9915;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=17.67;SB=-3.352e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:4488,427,0 chrXVI 390500 . A G 3516.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.66;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3516,352,0 chrXVI 390636 . C T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.23;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3703,352,0 chrXVI 390896 . G A 4195.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.5042;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.89;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:4195,400,0 chrXVI 391587 . G A 5671.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.43;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5671,547,0 chrXVI 392213 . T C 5204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.061;QD=25.89;ReadPosRankSum=1.715;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:5204,502,0 chrXVI 392874 . A G 6828.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-3.864e+03 GT:AD:DP:GQ:PL 1/1:0,268:270:99:6828,667,0 chrXVI 393134 . C T 6635.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=13.9163;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=27.08;SB=-3.162e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:6635,646,0 chrXVI 393285 . T C 5502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.131;DP=240;Dels=0.00;FS=13.063;HaplotypeScore=33.1953;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.146;QD=22.93;ReadPosRankSum=3.380;SB=-2.882e+03 GT:AD:DP:GQ:PL 1/1:4,234:240:99:5502,553,0 chrXVI 393808 . T A 2980 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.22;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3013,286,0 chrXVI 393858 . A G 2649 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.72;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2682,268,0 chrXVI 394442 . T A 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.721;DP=119;Dels=0.00;FS=10.678;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.720;QD=25.39;ReadPosRankSum=2.941;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:3054,292,0 chrXVI 395775 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2229,213,0 chrXVI 396203 . A G 2961 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.75;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2994,301,0 chrXVI 397587 . C T 4772.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.1248;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=28.07;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4772,451,0 chrXVI 398362 . G A 1934 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.45;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1967,189,0 chrXVI 398561 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=28.11;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3767,361,0 chrXVI 400049 . G A 5095.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.25;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5095,481,0 chrXVI 401426 . C T 5572.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.53;SB=-3.026e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5572,526,0 chrXVI 403300 . G T 495.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.470;DP=174;Dels=0.00;FS=202.259;HaplotypeScore=31.3057;MLEAC=1;MLEAF=0.500;MQ=58.93;MQ0=0;MQRankSum=0.763;QD=2.84;ReadPosRankSum=-6.975;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:126,48:174:99:525,0,2029 chrXVI 403562 . T C 4661.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.28;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4661,451,0 chrXVI 404554 . T C 3601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=148;Dels=0.00;FS=8.603;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.394;QD=24.33;ReadPosRankSum=1.708;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:1,144:148:99:3601,349,0 chrXVI 404634 . C A 2222 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2255,219,0 chrXVI 404753 . C T 285 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.05;FS=0.000;HaplotypeScore=16.2730;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=1;QD=14.25;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,17:19:30:318,30,0 chrXVI 406967 . G A 2894 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.15;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2927,286,0 chrXVI 406979 . T C 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=138;Dels=0.00;FS=6.721;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.262;QD=24.58;ReadPosRankSum=2.395;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:3392,328,0 chrXVI 408842 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.8910;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=27.28;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4038,379,0 chrXVI 408889 . G A 3983.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=26.91;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3983,379,0 chrXVI 409290 . C T 4344.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4344,439,0 chrXVI 413743 . C T 4136.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=27.21;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:4136,388,0 chrXVI 413894 . T A 4114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=154;Dels=0.00;FS=6.279;HaplotypeScore=8.6964;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.364;QD=26.71;ReadPosRankSum=2.402;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:4114,391,0 chrXVI 415092 . A G 2405 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.72;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2438,240,0 chrXVI 415173 . A G 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.566;QD=25.45;ReadPosRankSum=1.698;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2629,261,0 chrXVI 416247 . A G 5926.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=27.44;SB=-3.026e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5926,571,0 chrXVI 418457 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.359;QD=25.20;ReadPosRankSum=1.652;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3276,313,0 chrXVI 418598 . T C 4236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.352;QD=25.67;ReadPosRankSum=1.711;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:4236,418,0 chrXVI 418853 . A G 4522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=173;Dels=0.00;FS=10.319;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.947;QD=26.14;ReadPosRankSum=2.888;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:4522,436,0 chrXVI 418993 . C T 4579.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.62;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4579,448,0 chrXVI 419190 . A C 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=157;Dels=0.00;FS=3.038;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.599;QD=26.01;ReadPosRankSum=2.418;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:4084,403,0 chrXVI 420042 . A G 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=4.260;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.693;QD=24.97;ReadPosRankSum=1.703;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:3054,301,0 chrXVI 423898 . T C 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=151;Dels=0.00;FS=2.834;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.627;QD=26.96;ReadPosRankSum=2.417;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:4071,397,0 chrXVI 423962 . G T 3996.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.2649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.29;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3996,382,0 chrXVI 424350 . G T 567.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.442;DP=129;Dels=0.00;FS=235.691;HaplotypeScore=36.0424;MLEAC=1;MLEAF=0.500;MQ=56.51;MQ0=0;MQRankSum=-1.691;QD=4.40;ReadPosRankSum=-4.323;SB=-2.962e+00 GT:AD:DP:GQ:PL 0/1:70,59:129:99:597,0,1183 chrXVI 424352 . C T 55.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.113;DP=122;Dels=0.00;FS=113.886;HaplotypeScore=43.2176;MLEAC=1;MLEAF=0.500;MQ=56.31;MQ0=0;MQRankSum=-0.805;QD=0.45;ReadPosRankSum=-4.461;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,34:122:85:85,0,1237 chrXVI 425219 . T G 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=158;Dels=0.00;FS=3.024;HaplotypeScore=19.4940;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-1.522;QD=17.98;ReadPosRankSum=2.417;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:4,152:158:99:2874,286,0 chrXVI 425481 . C T 6242.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=12.7702;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=25.27;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:6242,616,0 chrXVI 425740 . A G 3913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.6042;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.661;QD=26.09;ReadPosRankSum=1.709;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3913,379,0 chrXVI 425804 . C T 4408.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.8511;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4408,421,0 chrXVI 426328 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.57;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3701,349,0 chrXVI 426370 . A T 3842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=167;Dels=0.00;FS=2.906;HaplotypeScore=5.5485;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.552;QD=23.01;ReadPosRankSum=2.361;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3842,379,0 chrXVI 426447 . C T 5965.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=27.11;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5965,571,0 chrXVI 426505 . C T 4858.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.7600;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.26;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4858,466,0 chrXVI 426991 . A G 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=16.9984;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.549;QD=22.75;ReadPosRankSum=1.711;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3708,361,0 chrXVI 427075 . C T 3435.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.02;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3435,331,0 chrXVI 427120 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=25.51;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3393,325,0 chrXVI 427130 . A G 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=0.785;QD=23.40;ReadPosRankSum=1.624;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3052,298,0 chrXVI 427238 . G T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=27.19;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3344,316,0 chrXVI 427708 . G A 851 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.79;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:84:884,84,0 chrXVI 427730 . C A 796 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.87;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:78:829,78,0 chrXVI 428058 . T C 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=135;Dels=0.00;FS=2.592;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-1.276;QD=22.25;ReadPosRankSum=2.948;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:3037,298,0 chrXVI 428065 . G A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=22.33;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3484,337,0 chrXVI 428130 . T C 4063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=171;Dels=0.00;FS=4.873;HaplotypeScore=12.2086;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.807;QD=23.76;ReadPosRankSum=3.408;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:4,166:171:99:4063,391,0 chrXVI 428253 . G A 5784.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.9310;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=26.41;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5784,553,0 chrXVI 428330 . C T 4708.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.3495;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.66;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4708,448,0 chrXVI 428479 . T C 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=4.393;HaplotypeScore=2.6979;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-1.024;QD=25.92;ReadPosRankSum=1.712;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4562,442,0 chrXVI 428562 . C G 2468 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.1017;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.26;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2501,246,0 chrXVI 428616 . A G 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.117;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.499;QD=24.11;ReadPosRankSum=2.405;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2709,268,0 chrXVI 428691 . A G 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=-0.302;QD=14.74;ReadPosRankSum=1.700;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:1654,209,0 chrXVI 428692 . G A 1603 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=14.71;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1636,206,0 chrXVI 428880 . A G 3752.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=25.70;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3752,370,0 chrXVI 428904 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=22.86;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3256,313,0 chrXVI 428908 . C T 3397.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=23.92;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3397,325,0 chrXVI 428918 . A G 3159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=152;Dels=0.00;FS=3.372;HaplotypeScore=5.1347;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=-0.670;QD=20.78;ReadPosRankSum=1.709;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3192,322,0 chrXVI 429004 . C G 5126.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.4244;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.29;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:5126,502,0 chrXVI 429187 . C T 4985.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.5973;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=25.43;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4985,493,0 chrXVI 429229 . C G 4902.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.01;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4902,487,0 chrXVI 429479 . T C 4591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=190;Dels=0.00;FS=4.504;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=0.064;QD=24.16;ReadPosRankSum=1.677;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4591,457,0 chrXVI 429656 . C T 3002 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9785;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=23.83;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3035,286,0 chrXVI 429659 . G T 3022 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=24.18;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3055,286,0 chrXVI 429704 . A T 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=4.244;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.726;QD=25.25;ReadPosRankSum=1.658;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2381,228,0 chrXVI 429834 . A C 3170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=6.140;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.952;QD=28.56;ReadPosRankSum=1.701;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:3203,310,0 chrXVI 429879 . C T 2641 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=26.41;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2674,253,0 chrXVI 429951 . T C 4773.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0009;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=27.59;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4773,457,0 chrXVI 430091 . G A 3060 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=22.17;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,134:138:99:3093,295,0 chrXVI 430100 . C T 3098 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.7170;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.73;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3131,313,0 chrXVI 430227 . T A 3209.99 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.48;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3243,307,0 chrXVI 430271 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.70;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3245,307,0 chrXVI 430826 . T C 3890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=149;Dels=0.00;FS=3.849;HaplotypeScore=6.9978;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=-0.094;QD=26.11;ReadPosRankSum=1.709;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3890,385,0 chrXVI 432226 . C G 6230.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=27.09;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:6230,601,0 chrXVI 432881 . C T 6751.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=16.7176;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.67;SB=-3.217e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:6751,655,0 chrXVI 433074 . A G 5275.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=23.6057;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.34;SB=-3.162e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5275,514,0 chrXVI 433340 . A G 4537.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.13;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4537,448,0 chrXVI 433481 . T C 6247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=241;Dels=0.00;FS=5.933;HaplotypeScore=21.1632;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.256;QD=25.92;ReadPosRankSum=2.971;SB=-3.227e+03 GT:AD:DP:GQ:PL 1/1:3,237:241:99:6247,613,0 chrXVI 434157 . C T 1408 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.47;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1441,138,0 chrXVI 434269 . A T 1627 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=29.58;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1660,162,0 chrXVI 434405 . G A 1882 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=24.44;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1915,192,0 chrXVI 434418 . G T 2130 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6540;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.15;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2163,219,0 chrXVI 434506 . C A 4938.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.27;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4938,493,0 chrXVI 434613 . C T 5126.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.29;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5126,484,0 chrXVI 435011 . T C 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.7702;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.577;QD=26.61;ReadPosRankSum=1.686;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:4018,391,0 chrXVI 435056 . C T 3833.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.3562;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=26.25;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3833,364,0 chrXVI 435173 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.4447;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.91;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:4010,414,0 chrXVI 435332 . C T 5159.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.5616;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=28.66;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:5159,496,0 chrXVI 435413 . C G 4667.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.0207;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.29;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4667,466,0 chrXVI 435620 . T C 3144 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.18;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3177,313,0 chrXVI 435711 . A T 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=136;Dels=0.00;FS=2.586;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.815;QD=25.76;ReadPosRankSum=2.948;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3504,334,0 chrXVI 436158 . T C 3172 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.9074;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=27.11;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:3205,310,0 chrXVI 436358 . T C 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=56;Dels=0.00;FS=3.900;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;MQRankSum=-0.321;QD=26.45;ReadPosRankSum=1.668;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:1,53:56:99:1514,144,0 chrXVI 436359 . T C 1464 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=27.11;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1497,144,0 chrXVI 436450 . T C 816 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.76;MQ0=0;QD=22.05;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:84:849,84,0 chrXVI 436464 . G A 637 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;QD=18.20;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:72:670,72,0 chrXVI 436465 . A C 647 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;QD=18.49;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:72:680,72,0 chrXVI 436481 . A G 428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;MQRankSum=-0.946;QD=19.45;ReadPosRankSum=1.576;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:1,21:22:45:461,45,0 chrXVI 443745 . A G 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=160;Dels=0.00;FS=2.765;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.241;QD=27.29;ReadPosRankSum=2.418;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:4367,427,0 chrXVI 443804 . T A 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=130;Dels=0.00;FS=6.328;HaplotypeScore=106.0657;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.596;QD=23.50;ReadPosRankSum=2.298;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3088,292,0 chrXVI 443905 . T G 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.3331;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.226;QD=23.49;ReadPosRankSum=1.311;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3227,322,0 chrXVI 443969 . G C 3806.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0960;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=25.04;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3806,373,0 chrXVI 444034 . C T 3829.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=26.78;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3829,367,0 chrXVI 444118 . T C 3648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=138;Dels=0.00;FS=3.659;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.898;QD=26.43;ReadPosRankSum=1.682;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3648,355,0 chrXVI 444290 . C T 3192 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=23.64;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3225,310,0 chrXVI 444303 . T C 3059 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=24.28;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3092,304,0 chrXVI 444306 . T C 3013 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=23.54;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3046,298,0 chrXVI 444321 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=22.83;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3001,292,0 chrXVI 444367 . A T 2516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=3.532;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=-1.111;QD=23.74;ReadPosRankSum=1.699;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2549,252,0 chrXVI 444434 . A G 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=107;Dels=0.00;FS=6.655;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=1.691;QD=25.80;ReadPosRankSum=2.358;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2794,271,0 chrXVI 444490 . G A 3954.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=27.65;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3954,373,0 chrXVI 444685 . A G 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.178;QD=25.79;ReadPosRankSum=1.709;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3920,379,0 chrXVI 444755 . G A 3838.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=24.2475;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.09;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3838,364,0 chrXVI 444899 . A G 4611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=3.672;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.988;QD=25.90;ReadPosRankSum=1.713;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4611,454,0 chrXVI 444920 . T A 4085.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.3068;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=26.02;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4085,406,0 chrXVI 444980 . A G 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=143;Dels=0.00;FS=9.312;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.688;QD=27.01;ReadPosRankSum=2.936;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3863,373,0 chrXVI 445300 . T C 2353 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.58;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2386,234,0 chrXVI 445378 . G T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.90;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3252,310,0 chrXVI 445425 . T C 2096 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.03;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2129,207,0 chrXVI 445607 . G A 1418 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.9360;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1451,141,0 chrXVI 445861 . T C 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.883;QD=25.95;ReadPosRankSum=2.400;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2602,258,0 chrXVI 445985 . C T 3491.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.8045;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.85;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3491,337,0 chrXVI 446280 . A T 4862.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.9077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.14;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4862,460,0 chrXVI 446457 . T C 5110.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.2349;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:5110,511,0 chrXVI 446756 . T C 4975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=202;Dels=0.00;FS=6.720;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.874;QD=24.63;ReadPosRankSum=2.376;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4975,493,0 chrXVI 447294 . G T 6221.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=15.4637;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=28.80;SB=-3.266e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:6221,583,0 chrXVI 447414 . T C 6290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=18.7568;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.346;QD=24.96;ReadPosRankSum=1.718;SB=-3.317e+03 GT:AD:DP:GQ:PL 1/1:1,250:252:99:6290,607,0 chrXVI 448074 . G A 5643.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=8.1382;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.39;SB=-3.184e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5643,550,0 chrXVI 448089 . T C 5179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.671;DP=243;Dels=0.00;FS=11.057;HaplotypeScore=9.6713;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.088;QD=21.31;ReadPosRankSum=3.801;SB=-3.099e+03 GT:AD:DP:GQ:PL 1/1:5,235:243:99:5179,499,0 chrXVI 448143 . G A 5592.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=18.5783;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.11;SB=-2.842e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5592,538,0 chrXVI 448407 . A G 5390.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=13.7013;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.39;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5390,538,0 chrXVI 448559 . T C 4999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.027;DP=193;Dels=0.00;FS=15.393;HaplotypeScore=11.1964;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.347;QD=25.90;ReadPosRankSum=4.019;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:6,186:193:99:4999,484,0 chrXVI 449133 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3056,289,0 chrXVI 450160 . T C 5206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=3.279;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.883;QD=25.90;ReadPosRankSum=1.645;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:5206,514,0 chrXVI 450430 . G A 1513 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=21.31;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1546,150,0 chrXVI 450675 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0973;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=27.26;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3250,310,0 chrXVI 450731 . T A 4045.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=28.89;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4045,385,0 chrXVI 450989 . G T 3843.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=26.14;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3843,373,0 chrXVI 451069 . T C 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=116;Dels=0.00;FS=6.291;HaplotypeScore=12.4321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.615;QD=23.86;ReadPosRankSum=2.407;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2801,285,0 chrXVI 451153 . T G 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=139;Dels=0.01;FS=3.337;HaplotypeScore=5.7963;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=0.853;QD=18.71;ReadPosRankSum=1.657;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2633,267,0 chrXVI 451219 . T C 3556.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.36;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3556,349,0 chrXVI 451317 . A G 1396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=1.118;QD=22.52;ReadPosRankSum=1.621;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1429,141,0 chrXVI 452126 . C T 3841.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.0679;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=23.71;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,158:162:99:3841,367,0 chrXVI 452140 . A G 3156 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=22.07;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3189,316,0 chrXVI 452142 . T G 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.185;QD=22.18;ReadPosRankSum=1.663;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3327,325,0 chrXVI 452400 . G C 6031.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=13.6340;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=26.22;SB=-3.050e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:6031,580,0 chrXVI 452986 . G A 4456.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.9286;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=25.91;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4456,424,0 chrXVI 453010 . C T 4094.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=25.27;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4094,403,0 chrXVI 453106 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3228;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.06;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3648,346,0 chrXVI 453333 . A G 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.071;QD=24.35;ReadPosRankSum=1.606;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2711,271,0 chrXVI 453447 . A G 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=135;Dels=0.00;FS=3.007;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.978;QD=23.70;ReadPosRankSum=2.412;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:2,130:135:99:3233,316,0 chrXVI 453508 . C T 5466.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.31;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5466,520,0 chrXVI 453647 . A G 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.2639;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.419;QD=22.10;ReadPosRankSum=1.779;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:2,132:138:99:3083,279,0 chrXVI 453873 . C T 4455.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.05;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4455,421,0 chrXVI 454244 . T C 4215.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4215,406,0 chrXVI 454319 . G A 7791.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=18.2432;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=27.24;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:7791,746,0 chrXVI 454517 . A G 11164.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=470;Dels=0.00;FS=11.096;HaplotypeScore=25.4527;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=1.006;QD=23.75;ReadPosRankSum=2.959;SB=-5.735e+03 GT:AD:DP:GQ:PL 1/1:3,462:470:99:11164,1109,0 chrXVI 454578 . T G 8199.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=413;Dels=0.00;FS=9.289;HaplotypeScore=17.3944;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.777;QD=19.85;ReadPosRankSum=2.963;SB=-5.836e+03 GT:AD:DP:GQ:PL 1/1:3,406:413:99:8199,809,0 chrXVI 454587 . C T 7909.01 filter AC=2;AF=1.00;AN=2;DP=398;Dels=0.00;FS=0.000;HaplotypeScore=11.5718;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.87;SB=-5.781e+03 GT:AD:DP:GQ:PL 1/1:0,395:398:99:7909,758,0 chrXVI 455063 . G C 5108.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.6132;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=23.01;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,218:222:99:5108,505,0 chrXVI 455098 . A C 38.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=3.379;HaplotypeScore=162.7019;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=-1.511;QD=0.22;ReadPosRankSum=1.712;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,171:175:9:71,9,0 chrXVI 455359 . T A 3779.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=24.70;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3779,361,0 chrXVI 455366 . T C 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=146;Dels=0.00;FS=6.899;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=0.439;QD=21.26;ReadPosRankSum=1.683;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,141:146:99:3137,324,0 chrXVI 455475 . T A 1647 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1680,159,0 chrXVI 455516 . G T 1030 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.02;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1063,108,0 chrXVI 455615 . G A 462 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=16.50;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:48:495,48,0 chrXVI 455737 . A C 360 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.00;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,23:24:39:393,39,0 chrXVI 455955 . G A 3319.01 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.89;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,116:119:99:3319,319,0 chrXVI 456024 . C T 3734.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.11;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3734,364,0 chrXVI 456292 . C T 3885.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.1252;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.85;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3885,388,0 chrXVI 456456 . G A 4283.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.5477;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.96;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4283,403,0 chrXVI 458635 . G C 3585.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.98;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3585,352,0 chrXVI 459330 . T G 2693 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.48;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2726,265,0 chrXVI 462045 . C T 1752 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=25.39;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1785,171,0 chrXVI 462073 . G A 1724 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=26.12;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1757,165,0 chrXVI 462121 . C G 1810 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=25.14;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1843,177,0 chrXVI 462153 . C A 1852 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=25.72;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1885,180,0 chrXVI 462164 . C T 1895 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=25.27;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1928,180,0 chrXVI 462319 . A G 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=108;Dels=0.00;FS=11.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.346;QD=24.22;ReadPosRankSum=2.879;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2649,259,0 chrXVI 462499 . A G 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.5065;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=1.386;QD=25.31;ReadPosRankSum=1.709;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3847,373,0 chrXVI 462656 . G A 7238.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=21.9048;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=25.31;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,285:286:99:7238,757,0 chrXVI 462756 . T C 7494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.263;DP=324;Dels=0.00;FS=5.215;HaplotypeScore=12.8909;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=1.324;QD=23.13;ReadPosRankSum=3.381;SB=-3.443e+03 GT:AD:DP:GQ:PL 1/1:4,320:324:99:7494,736,0 chrXVI 462814 . T G 9535.01 filter AC=2;AF=1.00;AN=2;DP=449;Dels=0.00;FS=0.000;HaplotypeScore=17.7418;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.24;SB=-6.539e+03 GT:AD:DP:GQ:PL 1/1:0,448:449:99:9535,932,0 chrXVI 462835 . G A 8511.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.284;DP=422;Dels=0.00;FS=3.254;HaplotypeScore=4.6436;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=-1.600;QD=20.17;ReadPosRankSum=1.650;SB=-5.592e+03 GT:AD:DP:GQ:PL 1/1:1,420:422:99:8511,817,0 chrXVI 462843 . T C 8137.01 filter AC=2;AF=1.00;AN=2;DP=398;Dels=0.00;FS=0.000;HaplotypeScore=6.8016;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=20.44;SB=-5.564e+03 GT:AD:DP:GQ:PL 1/1:0,398:398:99:8137,800,0 chrXVI 462936 . C T 8919.01 PASS AC=2;AF=1.00;AN=2;DP=360;Dels=0.00;FS=0.000;HaplotypeScore=26.4098;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.78;SB=-5.200e+03 GT:AD:DP:GQ:PL 1/1:0,358:360:99:8919,854,0 chrXVI 463061 . T C 8080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=342;Dels=0.00;FS=6.111;HaplotypeScore=16.1365;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-0.698;QD=23.63;ReadPosRankSum=2.413;SB=-5.049e+03 GT:AD:DP:GQ:PL 1/1:2,337:342:99:8080,788,0 chrXVI 463075 . C T 7673.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=15.9796;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=23.18;SB=-4.763e+03 GT:AD:DP:GQ:PL 1/1:0,328:331:99:7673,728,0 chrXVI 463543 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.1239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2902,297,0 chrXVI 463609 . C G 5022.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.02;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:5022,502,0 chrXVI 463700 . C T 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.0637;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.689;QD=25.94;ReadPosRankSum=-0.752;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:4151,397,0 chrXVI 464146 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=22.21;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2720,256,0 chrXVI 464194 . A G 2089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.414;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.8714;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.034;QD=18.99;ReadPosRankSum=2.248;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2122,185,0 chrXVI 464559 . G A 6770.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.35;SB=-3.885e+03 GT:AD:DP:GQ:PL 1/1:0,276:278:99:6770,670,0 chrXVI 464709 . C T 7159.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=17.5717;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=26.42;SB=-3.532e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:7159,697,0 chrXVI 465889 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.75;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3302,325,0 chrXVI 465930 . A G 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.699;QD=25.57;ReadPosRankSum=1.641;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2973,286,0 chrXVI 466112 . G T 4885.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.58;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4885,493,0 chrXVI 466824 . G C 3102 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=25.43;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,118:122:99:3135,304,0 chrXVI 467054 . C T 3226.07 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.1557;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.80;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3259,316,0 chrXVI 467077 . T C 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=152;Dels=0.00;FS=2.909;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=1.024;QD=17.72;ReadPosRankSum=2.417;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:2726,270,0 chrXVI 467087 . G C 3198 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.04;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3231,319,0 chrXVI 467237 . C T 3652.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=25.01;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3652,343,0 chrXVI 467571 . T C 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=3.415;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.154;QD=22.46;ReadPosRankSum=1.694;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2077,210,0 chrXVI 467632 . T C 3852.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.94;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3852,370,0 chrXVI 467771 . A G 4749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=5.506;HaplotypeScore=9.7136;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.027;QD=28.44;ReadPosRankSum=1.691;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4749,457,0 chrXVI 468177 . C T 5206.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.99;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5206,496,0 chrXVI 468262 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.57;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3785,367,0 chrXVI 468512 . A C 5416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=4.022;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.314;QD=26.16;ReadPosRankSum=1.682;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:5416,535,0 chrXVI 468648 . C G 4885.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.2462;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=27.29;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4885,475,0 chrXVI 469012 . C A 5136.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.89;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:5136,490,0 chrXVI 469693 . C T 2307 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2340,234,0 chrXVI 469730 . G C 2325 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2358,231,0 chrXVI 470511 . G A 5540.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.3115;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.70;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5540,532,0 chrXVI 470616 . A G 4230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=6.286;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.877;QD=28.20;ReadPosRankSum=2.417;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:4230,409,0 chrXVI 470860 . C G 5343.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=27.97;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:5343,520,0 chrXVI 471189 . G T 4980.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.21;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4980,484,0 chrXVI 471267 . T C 4266.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4266,418,0 chrXVI 471834 . A G 3594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.383;QD=23.80;ReadPosRankSum=1.639;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3594,358,0 chrXVI 471891 . A G 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.727;QD=22.37;ReadPosRankSum=1.711;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3624,364,0 chrXVI 472110 . A G 4186.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.2220;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=25.84;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4186,409,0 chrXVI 472490 . G A 3741.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.77;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3741,364,0 chrXVI 472568 . G A 3772.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.18;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3772,361,0 chrXVI 472696 . A C 3297.01 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;QD=27.71;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3297,325,0 chrXVI 472808 . A T 1121 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=11.0900;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.85;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1154,108,0 chrXVI 472825 . T C 1133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=4.597;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.530;QD=22.66;ReadPosRankSum=1.662;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:1,48:50:99:1166,111,0 chrXVI 472894 . G T 1864 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.19;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1897,177,0 chrXVI 473286 . T C 5884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=225;Dels=0.00;FS=6.396;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.802;QD=26.15;ReadPosRankSum=2.417;SB=-3.112e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5884,580,0 chrXVI 473391 . T C 4882.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.11;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4882,487,0 chrXVI 473481 . A G 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.746;DP=170;Dels=0.00;FS=2.567;HaplotypeScore=14.8592;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.651;QD=24.74;ReadPosRankSum=2.935;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:4205,409,0 chrXVI 473594 . G A 4542.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.4608;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=26.41;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4542,430,0 chrXVI 473877 . A C 4534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.529;QD=23.61;ReadPosRankSum=1.659;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:4534,451,0 chrXVI 473892 . G A 4210.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=23.39;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4210,406,0 chrXVI 474003 . T C 3321.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.75;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3321,334,0 chrXVI 474526 . C T 5869.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.4139;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.30;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5869,553,0 chrXVI 474750 . G A 4280.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4280,418,0 chrXVI 475484 . G C 3957.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=25.04;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3957,382,0 chrXVI 475496 . G A 4233.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.0679;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=24.61;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4233,403,0 chrXVI 476694 . C G 3804.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=25.36;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3804,373,0 chrXVI 476826 . G A 2353 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=21.99;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2386,228,0 chrXVI 476833 . T C 2341 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=-0.654;QD=21.88;ReadPosRankSum=1.699;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2374,226,0 chrXVI 476836 . T C 2242 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-0.031;QD=20.02;ReadPosRankSum=1.701;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2275,222,0 chrXVI 476851 . A T 2251 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.0791;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=19.57;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2284,214,0 chrXVI 476932 . G A 3723.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.6254;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.16;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3723,349,0 chrXVI 477202 . A T 4344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=175;Dels=0.00;FS=3.857;HaplotypeScore=18.3493;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.426;QD=24.82;ReadPosRankSum=1.673;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4344,424,0 chrXVI 477321 . T C 3686.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.9690;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.63;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3686,358,0 chrXVI 477481 . C G 4852.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.76;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4852,478,0 chrXVI 478120 . G A 4175.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=23.32;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4175,406,0 chrXVI 478141 . G A 3606.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=23.88;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3606,346,0 chrXVI 478144 . A T 3133 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=21.17;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3166,310,0 chrXVI 478228 . G A 3664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=142;Dels=0.00;FS=3.529;HaplotypeScore=8.8689;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.146;QD=25.80;ReadPosRankSum=-0.561;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3664,324,0 chrXVI 478277 . T C 2801 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.0408;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.77;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2834,280,0 chrXVI 478288 . T C 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=3.119;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-0.587;QD=21.30;ReadPosRankSum=1.646;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2632,256,0 chrXVI 478558 . C T 3641.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.7522;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=28.22;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3641,343,0 chrXVI 478657 . G A 3942.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.46;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3942,379,0 chrXVI 478714 . G A 4215.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.39;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4215,418,0 chrXVI 478917 . A G 4126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=6.595;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.355;QD=27.51;ReadPosRankSum=2.367;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:4126,403,0 chrXVI 479396 . G A 3630.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.88;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3630,358,0 chrXVI 479770 . A G 7030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=264;Dels=0.00;FS=7.015;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.622;QD=26.63;ReadPosRankSum=2.403;SB=-3.452e+03 GT:AD:DP:GQ:PL 1/1:2,262:264:99:7030,685,0 chrXVI 479826 . C T 7594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.194;DP=287;Dels=0.00;FS=3.700;HaplotypeScore=16.4009;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.509;QD=26.46;ReadPosRankSum=-1.320;SB=-3.482e+03 GT:AD:DP:GQ:PL 1/1:1,285:287:99:7594,743,0 chrXVI 479899 . C T 8016.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=14.8009;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=26.03;SB=-4.078e+03 GT:AD:DP:GQ:PL 1/1:0,304:308:99:8016,749,0 chrXVI 479920 . A C 6688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=280;Dels=0.00;FS=6.163;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.375;QD=23.89;ReadPosRankSum=2.379;SB=-4.022e+03 GT:AD:DP:GQ:PL 1/1:2,276:280:99:6688,655,0 chrXVI 479932 . G T 6067.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=8.2447;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.90;SB=-3.893e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:6067,586,0 chrXVI 480296 . C A 117.26 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.03;FS=0.000;HaplotypeScore=12.2245;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=1.86;SB=-7.943e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:15:150,15,0 chrXVI 480383 . T A 1715 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=27.66;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1748,168,0 chrXVI 480441 . T G 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.490;QD=27.77;ReadPosRankSum=1.619;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2588,253,0 chrXVI 480754 . A G 4379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=159;Dels=0.00;FS=9.626;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.395;QD=27.54;ReadPosRankSum=2.930;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:3,155:159:99:4379,427,0 chrXVI 480795 . T C 4980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=193;Dels=0.00;FS=5.868;HaplotypeScore=20.9624;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=1.153;QD=25.80;ReadPosRankSum=2.942;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:3,188:193:99:4980,496,0 chrXVI 481072 . T G 4643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.096;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.463;QD=25.65;ReadPosRankSum=-1.694;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4643,434,0 chrXVI 481833 . A G 6173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.547;QD=24.79;ReadPosRankSum=2.400;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:2,247:249:99:6173,601,0 chrXVI 481955 . G T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.79;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3350,328,0 chrXVI 481979 . C T 3436.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.61;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3436,340,0 chrXVI 482155 . G A 7934.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=13.3146;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=29.94;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:7934,743,0 chrXVI 482212 . G A 4094.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=25.27;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:4094,388,0 chrXVI 482234 . T C 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-0.587;QD=23.53;ReadPosRankSum=1.646;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2927,286,0 chrXVI 482354 . A T 5051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.3970;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-2.225;QD=21.05;ReadPosRankSum=2.419;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,238:240:99:5051,493,0 chrXVI 482429 . A G 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;DP=134;Dels=0.00;FS=2.913;HaplotypeScore=16.2604;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.176;QD=18.90;ReadPosRankSum=2.413;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2565,261,0 chrXVI 482737 . G C 2550 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.79;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2583,255,0 chrXVI 482770 . C T 1985 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=97.9518;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=16.14;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2018,198,0 chrXVI 482968 . T G 5158.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=25.16;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5158,517,0 chrXVI 483004 . G A 5277.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=6.6084;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.37;SB=-3.798e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5277,511,0 chrXVI 483027 . A T 5475.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.62;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:99:5475,541,0 chrXVI 483116 . G A 5428.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=15.8347;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=24.90;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5428,517,0 chrXVI 483298 . T G 4855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.2642;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=0.490;QD=24.40;ReadPosRankSum=1.715;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4855,484,0 chrXVI 483319 . T A 5187.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.5621;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=24.35;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5187,499,0 chrXVI 483355 . T C 4393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=225;Dels=0.00;FS=5.953;HaplotypeScore=7.0426;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.090;QD=19.52;ReadPosRankSum=2.942;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:3,221:225:99:4393,454,0 chrXVI 483359 . G T 4811.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.1215;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=20.83;SB=-3.092e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:4811,463,0 chrXVI 483739 . T C 5492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=238;Dels=0.00;FS=6.975;HaplotypeScore=11.8913;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.066;QD=23.08;ReadPosRankSum=2.387;SB=-3.052e+03 GT:AD:DP:GQ:PL 1/1:2,235:238:99:5492,553,0 chrXVI 483904 . T C 5351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=18.9678;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.486;QD=23.16;ReadPosRankSum=1.717;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:1,227:231:99:5351,532,0 chrXVI 483961 . G C 5245.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.8585;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.31;SB=-3.255e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5245,523,0 chrXVI 484285 . C T 5233.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=27.98;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5233,490,0 chrXVI 484327 . A G 4625.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.7601;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.73;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4625,451,0 chrXVI 484357 . C T 5406.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.26;SB=-2.937e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5406,511,0 chrXVI 484429 . T C 6865.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=20.5921;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.82;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:0,253:256:99:6865,670,0 chrXVI 485045 . C T 3913.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.5808;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.74;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3913,373,0 chrXVI 485132 . A G 4068.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=23.65;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4068,391,0 chrXVI 485137 . T C 4081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.764;DP=185;Dels=0.00;FS=5.812;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=1.269;QD=22.06;ReadPosRankSum=2.929;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:3,180:185:99:4081,400,0 chrXVI 485355 . T C 5410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.296;DP=214;Dels=0.00;FS=8.876;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-1.057;QD=25.28;ReadPosRankSum=3.386;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:4,208:214:99:5410,529,0 chrXVI 485420 . G A 5453.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=26.60;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5453,523,0 chrXVI 485697 . C T 2808 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=24.63;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2841,274,0 chrXVI 485698 . A G 2657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=-0.371;QD=23.51;ReadPosRankSum=1.701;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2690,268,0 chrXVI 485788 . T G 4840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.862;QD=25.34;ReadPosRankSum=1.714;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4840,493,0 chrXVI 485801 . G A 5103.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.3434;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=26.44;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5103,487,0 chrXVI 485873 . T G 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=147;Dels=0.00;FS=2.868;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=61.65;MQ0=0;MQRankSum=-1.195;QD=25.50;ReadPosRankSum=2.331;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:3748,364,0 chrXVI 485898 . C T 3092 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.2183;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.60;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3125,301,0 chrXVI 486011 . C A 2527 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.02;FS=0.000;HaplotypeScore=14.9386;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.74;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2560,247,0 chrXVI 486231 . G T 1896 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=29.17;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1929,183,0 chrXVI 486307 . G A 3539.01 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=31.32;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3539,331,0 chrXVI 486334 . G A 2991 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=25.35;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,115:118:99:3024,309,0 chrXVI 486489 . T C 4371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=167;Dels=0.00;FS=6.531;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.125;QD=26.17;ReadPosRankSum=2.420;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4371,418,0 chrXVI 486595 . A G 4039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=152;Dels=0.00;FS=9.293;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.715;QD=26.57;ReadPosRankSum=2.954;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:4039,400,0 chrXVI 486612 . A G 3932.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.8293;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.58;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3932,403,0 chrXVI 486646 . G A 4449.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.4033;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=27.29;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4449,418,0 chrXVI 486789 . T G 3840.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=27.23;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3840,382,0 chrXVI 486969 . A T 3777.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=25.52;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3777,358,0 chrXVI 487204 . C T 2062 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=60.4339;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=23.98;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2095,201,0 chrXVI 487322 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.0955;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.96;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2577,247,0 chrXVI 487504 . T C 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1679;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.589;QD=25.48;ReadPosRankSum=1.703;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:3142,310,0 chrXVI 488115 . A G 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=3.047;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.859;QD=24.52;ReadPosRankSum=1.703;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2975,295,0 chrXVI 488130 . G A 3004 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=24.23;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3037,286,0 chrXVI 488493 . A G 3026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.085;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-1.292;QD=25.64;ReadPosRankSum=1.703;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:3059,298,0 chrXVI 488578 . G A 1636 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=77.3207;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=19.02;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1669,198,0 chrXVI 488646 . G T 1332 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=23.79;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1365,129,0 chrXVI 488655 . A C 1423 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.23;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1456,144,0 chrXVI 489145 . G A 6495.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.7831;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.84;SB=-3.647e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:6495,625,0 chrXVI 489307 . T A 4591.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=27.49;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4591,439,0 chrXVI 489538 . T C 6575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-1.058;QD=25.78;ReadPosRankSum=1.718;SB=-3.024e+03 GT:AD:DP:GQ:PL 1/1:1,251:255:99:6575,628,0 chrXVI 489543 . G A 6533.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=26.03;SB=-3.175e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:6533,613,0 chrXVI 489607 . G A 3710.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.63;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3710,349,0 chrXVI 490120 . C T 770 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.8696;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=5.27;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:78:803,78,0 chrXVI 490131 . G T 1109 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=6.72;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:1142,114,0 chrXVI 490135 . G A 1362 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=8.01;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:1395,138,0 chrXVI 490450 . C T 4111.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1955;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.59;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:4111,400,0 chrXVI 490554 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.48;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3263,319,0 chrXVI 490756 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.66;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3458,337,0 chrXVI 490906 . T C 4215.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7018;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=26.85;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4215,409,0 chrXVI 491068 . C T 5016.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=27.41;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5016,469,0 chrXVI 491113 . G A 4436.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=23.35;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4436,433,0 chrXVI 491133 . C T 4570.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.6131;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.80;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4570,433,0 chrXVI 491370 . T G 5476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=219;Dels=0.00;FS=3.720;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.941;QD=25.00;ReadPosRankSum=1.700;SB=-2.804e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:5476,544,0 chrXVI 491388 . G A 5787.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=25.49;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5787,541,0 chrXVI 491959 . T C 1638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=3.378;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=-0.796;QD=22.14;ReadPosRankSum=1.592;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1671,162,0 chrXVI 492242 . G A 7573.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=11.9447;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=27.84;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:7573,710,0 chrXVI 492354 . C T 6442.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.46;SB=-3.097e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:6442,610,0 chrXVI 493097 . G A 5415.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=16.5531;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.63;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:5415,514,0 chrXVI 493194 . G T 5431.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.36;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5431,526,0 chrXVI 493521 . A G 5874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=213;Dels=0.00;FS=4.232;HaplotypeScore=6.5637;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.667;QD=27.58;ReadPosRankSum=1.699;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:5874,565,0 chrXVI 494184 . G C 4568.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=25.95;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4568,445,0 chrXVI 494210 . C T 4582.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.0847;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.90;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4582,433,0 chrXVI 494922 . T C 4996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=217;Dels=0.00;FS=5.918;HaplotypeScore=19.1473;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.113;QD=23.02;ReadPosRankSum=2.958;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:3,211:217:99:4996,493,0 chrXVI 495156 . A G 4333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.394;QD=26.10;ReadPosRankSum=1.605;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:4333,421,0 chrXVI 495265 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.0164;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.226;QD=24.47;ReadPosRankSum=1.707;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3377,331,0 chrXVI 495832 . G A 3802.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8042;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.37;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3802,355,0 chrXVI 496405 . T C 6077.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=27.25;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,219:223:99:6077,595,0 chrXVI 496486 . A G 5326.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.9716;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.24;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5326,520,0 chrXVI 496633 . T C 6413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=246;Dels=0.00;FS=6.514;HaplotypeScore=14.6222;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.586;QD=26.07;ReadPosRankSum=2.399;SB=-3.332e+03 GT:AD:DP:GQ:PL 1/1:2,243:246:99:6413,640,0 chrXVI 496734 . A G 5729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=223;Dels=0.00;FS=9.388;HaplotypeScore=10.9932;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.239;QD=25.69;ReadPosRankSum=2.842;SB=-3.039e+03 GT:AD:DP:GQ:PL 1/1:3,220:223:99:5729,559,0 chrXVI 497140 . T C 4660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.358;QD=26.48;ReadPosRankSum=1.673;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4660,457,0 chrXVI 497425 . C T 5391.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.2129;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=27.93;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5391,517,0 chrXVI 497707 . A G 8397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.374;DP=299;Dels=0.00;FS=17.523;HaplotypeScore=16.0073;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.434;QD=28.08;ReadPosRankSum=3.415;SB=-3.114e+03 GT:AD:DP:GQ:PL 1/1:4,295:299:99:8397,809,0 chrXVI 497758 . T C 6389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=239;Dels=0.00;FS=2.840;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.304;QD=26.73;ReadPosRankSum=2.367;SB=-2.869e+03 GT:AD:DP:GQ:PL 1/1:2,236:239:99:6389,610,0 chrXVI 498269 . C T 6576.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=24.6298;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.10;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:6576,634,0 chrXVI 498437 . A G 8660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=328;Dels=0.00;FS=4.852;HaplotypeScore=14.2448;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.980;QD=26.40;ReadPosRankSum=1.721;SB=-3.034e+03 GT:AD:DP:GQ:PL 1/1:1,326:328:99:8660,857,0 chrXVI 498617 . T C 8489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=336;Dels=0.00;FS=10.797;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.546;QD=25.26;ReadPosRankSum=2.420;SB=-2.937e+03 GT:AD:DP:GQ:PL 1/1:2,333:336:99:8489,827,0 chrXVI 498689 . C T 5882.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.0714;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.57;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5882,565,0 chrXVI 498788 . A G 5034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=199;Dels=0.00;FS=2.850;HaplotypeScore=14.3810;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.808;QD=25.30;ReadPosRankSum=2.425;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:5034,490,0 chrXVI 499073 . G A 6086.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=28.05;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6086,580,0 chrXVI 499315 . G A 4049.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.1936;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4049,394,0 chrXVI 499388 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=14.4009;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=26.04;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3437,334,0 chrXVI 499635 . C T 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.797;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;MQRankSum=0.032;QD=24.19;ReadPosRankSum=1.052;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3967,370,0 chrXVI 499664 . A G 2796 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.58;MQ0=0;QD=19.97;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2829,271,0 chrXVI 499678 . A G 2058 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=43.8504;MLEAC=2;MLEAF=1.00;MQ=33.76;MQ0=0;QD=17.15;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2091,207,0 chrXVI 499684 . G A 1855 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=89.6845;MLEAC=2;MLEAF=1.00;MQ=32.66;MQ0=0;QD=16.86;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1888,180,0 chrXVI 499691 . T C 1108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.925;DP=166;Dels=0.00;FS=5.213;HaplotypeScore=93.8326;MLEAC=2;MLEAF=1.00;MQ=33.02;MQ0=0;MQRankSum=1.741;QD=6.67;ReadPosRankSum=-9.527;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:46,120:166:99:1141,114,0 chrXVI 499739 . A G 1969 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=14.48;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2002,192,0 chrXVI 500000 . G A 2652 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.24;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2685,250,0 chrXVI 500007 . G A 2927 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3637;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=21.21;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2960,280,0 chrXVI 500189 . A G 4713.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.0746;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=28.74;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4713,454,0 chrXVI 500244 . C T 5271.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=26.76;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5271,496,0 chrXVI 500345 . T A 5184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=0.250;QD=26.72;ReadPosRankSum=1.643;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:5184,493,0 chrXVI 500351 . C T 4865.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.6175;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=24.20;SB=-2.988e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4865,463,0 chrXVI 500426 . C G 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=4.122;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=0.168;QD=22.98;ReadPosRankSum=1.576;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3585,358,0 chrXVI 500683 . C T 5113.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=26.63;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:5113,487,0 chrXVI 500726 . A C 4968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=197;Dels=0.00;FS=3.672;HaplotypeScore=21.2944;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.952;QD=25.22;ReadPosRankSum=1.696;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:1,190:197:99:4968,484,0 chrXVI 500964 . G T 5648.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=10.9483;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=22.96;SB=-3.421e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5648,544,0 chrXVI 500975 . G C 5602.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=21.63;SB=-3.561e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:5602,538,0 chrXVI 500988 . T C 5040.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=19.69;SB=-3.344e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5040,493,0 chrXVI 501255 . A G 5033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=198;Dels=0.00;FS=3.027;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=0.492;QD=25.42;ReadPosRankSum=2.412;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:5033,502,0 chrXVI 501323 . T A 4976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=187;Dels=0.00;FS=3.968;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-1.732;QD=26.61;ReadPosRankSum=1.677;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4976,472,0 chrXVI 501575 . G A 4244.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.20;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4244,400,0 chrXVI 501709 . G C 5267.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.47;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:5267,514,0 chrXVI 501909 . G A 4560.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.00;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4560,439,0 chrXVI 502052 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=24.17;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2957,286,0 chrXVI 502064 . C T 2499 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=23.58;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2532,244,0 chrXVI 502088 . C A 1970 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.91;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2003,195,0 chrXVI 502118 . T C 1488 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.08;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1521,150,0 chrXVI 502255 . G A 1793 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.91;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1826,174,0 chrXVI 502697 . G A 127.26 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.03;FS=0.000;HaplotypeScore=14.7755;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=1.12;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,108:111:15:160,15,0 chrXVI 503041 . A T 4374.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.3840;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.02;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4374,424,0 chrXVI 503157 . C G 3150 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.86;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3183,319,0 chrXVI 503305 . A C 3172 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.8004;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=23.50;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3205,307,0 chrXVI 503313 . A G 2832 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-1.155;QD=22.48;ReadPosRankSum=1.677;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2865,280,0 chrXVI 503314 . A G 2833 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.5769;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.006;QD=22.85;ReadPosRankSum=1.704;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2866,280,0 chrXVI 503888 . T C 4578.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.7874;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.22;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4578,457,0 chrXVI 504262 . G A 4097.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5065;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.93;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4097,388,0 chrXVI 504666 . G A 4156.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.75;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4156,400,0 chrXVI 505150 . G A 4255.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.5773;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.76;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4255,403,0 chrXVI 505698 . C G 4949.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.2968;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=26.05;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:4949,487,0 chrXVI 505721 . A G 4287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=187;Dels=0.00;FS=2.956;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.584;QD=22.93;ReadPosRankSum=2.384;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4287,415,0 chrXVI 505749 . T C 3933.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.14;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3933,394,0 chrXVI 505836 . A G 4749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=4.311;HaplotypeScore=7.1244;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.906;QD=23.86;ReadPosRankSum=1.714;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:1,196:199:99:4749,475,0 chrXVI 505893 . G A 4606.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=25.03;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4606,436,0 chrXVI 506058 . T G 7327.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=14.1512;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=27.55;SB=-3.848e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:7327,718,0 chrXVI 506129 . T C 5946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=228;Dels=0.00;FS=6.803;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.260;QD=26.08;ReadPosRankSum=2.352;SB=-3.037e+03 GT:AD:DP:GQ:PL 1/1:2,225:228:99:5946,577,0 chrXVI 506265 . C A 4901.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.8979;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=24.14;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4901,460,0 chrXVI 506274 . A C 4361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=194;Dels=0.00;FS=5.399;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.124;QD=22.48;ReadPosRankSum=2.933;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:4361,433,0 chrXVI 506349 . G T 5437.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.5129;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=27.88;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:5437,517,0 chrXVI 506806 . C T 4123.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=19.6884;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=26.09;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:4123,400,0 chrXVI 507005 . A G 5539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=233;Dels=0.00;FS=7.030;HaplotypeScore=10.8803;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;MQRankSum=-0.237;QD=23.77;ReadPosRankSum=2.418;SB=-2.985e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:5539,553,0 chrXVI 507023 . A G 5047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=236;Dels=0.00;FS=6.775;HaplotypeScore=3.4293;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;MQRankSum=-1.645;QD=21.39;ReadPosRankSum=2.408;SB=-3.196e+03 GT:AD:DP:GQ:PL 1/1:2,233:236:99:5047,508,0 chrXVI 507026 . C T 4900.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=2.6406;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=20.25;SB=-3.231e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:4900,490,0 chrXVI 507047 . A C 4909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.530;DP=248;Dels=0.00;FS=4.319;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=0.622;QD=19.79;ReadPosRankSum=3.810;SB=-3.435e+03 GT:AD:DP:GQ:PL 1/1:5,241:248:99:4909,464,0 chrXVI 507169 . A G 4547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=193;Dels=0.00;FS=5.527;HaplotypeScore=16.8281;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-0.172;QD=23.56;ReadPosRankSum=2.922;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:4547,448,0 chrXVI 507218 . C A 4941.01 SnpCluster AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.8340;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=23.31;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4941,478,0 chrXVI 507220 . A G 4565.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.489;DP=205;Dels=0.00;FS=10.062;HaplotypeScore=5.1212;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;MQRankSum=-1.267;QD=22.27;ReadPosRankSum=4.443;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:7,198:205:99:4565,448,0 chrXVI 507225 . A G 4847.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;MQRankSum=-1.294;QD=23.53;ReadPosRankSum=2.401;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4847,487,0 chrXVI 507326 . C T 3762.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=26.68;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3762,361,0 chrXVI 507401 . G C 3710.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.48;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3710,367,0 chrXVI 507608 . A G 2745 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.28;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2778,285,0 chrXVI 507635 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=140;Dels=0.00;FS=3.031;HaplotypeScore=10.4937;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=0.799;QD=23.04;ReadPosRankSum=2.378;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:2,135:140:99:3258,316,0 chrXVI 507830 . G C 3743.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=25.46;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3743,367,0 chrXVI 507854 . A G 3301.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=25.39;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3301,328,0 chrXVI 507917 . G A 2570 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=26.77;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2603,256,0 chrXVI 508199 . C T 3469.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8667;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.08;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3469,328,0 chrXVI 508243 . A G 3731.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.73;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3731,361,0 chrXVI 508697 . C T 4078.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.210;DP=180;Dels=0.00;FS=3.035;HaplotypeScore=6.5600;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.016;QD=22.66;ReadPosRankSum=1.035;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4078,382,0 chrXVI 508709 . G A 3551.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.0232;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.18;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3551,337,0 chrXVI 508976 . G A 4843.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.6500;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.84;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4843,460,0 chrXVI 509084 . G A 5784.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.6991;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.78;SB=-2.950e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5784,550,0 chrXVI 509658 . G A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=12.0639;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=26.32;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3579,337,0 chrXVI 509810 . T C 4343.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=26.98;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4343,421,0 chrXVI 509832 . C T 3797.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=24.98;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3797,352,0 chrXVI 509846 . A G 3123 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=22.15;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3156,313,0 chrXVI 510020 . A G 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=133;Dels=0.00;FS=2.876;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.723;QD=26.32;ReadPosRankSum=2.357;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:3500,340,0 chrXVI 510238 . A G 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=3.016;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.040;QD=22.15;ReadPosRankSum=2.370;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2093,201,0 chrXVI 510285 . G T 1938 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=22.28;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1971,189,0 chrXVI 510291 . A G 2023 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=23.52;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2056,198,0 chrXVI 510328 . T A 2313 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.60;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2346,222,0 chrXVI 510355 . A G 1698 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.22;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1731,171,0 chrXVI 510403 . A G 1581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=66;Dels=0.00;FS=2.822;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-1.814;QD=23.95;ReadPosRankSum=2.375;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1614,159,0 chrXVI 510469 . A T 1441 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.9407;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=24.42;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1474,141,0 chrXVI 510522 . T C 1549 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=25.82;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1582,156,0 chrXVI 510564 . T A 1583 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=26.83;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1616,153,0 chrXVI 510580 . T C 1451 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=26.38;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1484,144,0 chrXVI 510650 . C T 1110 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=19.14;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1143,126,0 chrXVI 510652 . T C 1147 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=19.78;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1180,129,0 chrXVI 510663 . G A 1482 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.03;FS=0.000;HaplotypeScore=3.6549;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=20.03;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1515,144,0 chrXVI 510713 . A T 2822 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=24.75;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2855,271,0 chrXVI 510773 . C T 3732.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.85;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3732,358,0 chrXVI 510816 . G A 4305.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.0323;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=28.51;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:4305,403,0 chrXVI 510985 . A G 5147.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.5063;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=26.26;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5147,505,0 chrXVI 511038 . C T 4798.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.9298;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.08;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4798,463,0 chrXVI 511406 . A G 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.554;QD=22.79;ReadPosRankSum=1.709;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3350,328,0 chrXVI 511425 . T A 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=110;Dels=0.00;FS=6.264;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=-0.693;QD=21.35;ReadPosRankSum=1.701;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2381,226,0 chrXVI 511469 . A T 1643 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.47;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1676,165,0 chrXVI 511583 . T C 1986 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=22.07;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2019,201,0 chrXVI 511623 . T A 863 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=23.97;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:87:896,87,0 chrXVI 511625 . C T 809 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;QD=23.79;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:81:842,81,0 chrXVI 511628 . T G 769 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=9.165;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;MQRankSum=-1.418;QD=23.30;ReadPosRankSum=1.628;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:1,32:33:81:802,81,0 chrXVI 511707 . C G 770 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=18.33;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:78:803,78,0 chrXVI 511744 . T A 1054 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;MQRankSum=-1.207;QD=15.97;ReadPosRankSum=1.680;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1087,105,0 chrXVI 511751 . A C 1095 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;QD=17.66;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1128,108,0 chrXVI 511752 . A C 1082 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;QD=17.17;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1115,108,0 chrXVI 511769 . T A 1202 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;QD=16.47;SB=-9.601e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1235,117,0 chrXVI 511842 . C A 1765 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=24.86;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1798,171,0 chrXVI 511946 . G A 2290 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=27.59;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2323,222,0 chrXVI 512028 . C T 2266 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=25.46;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2299,222,0 chrXVI 512102 . T A 1121 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=25.48;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1154,108,0 chrXVI 512105 . C T 1021 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.20;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1054,108,0 chrXVI 512148 . T C 865 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.03;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:90:898,90,0 chrXVI 512216 . A C 727 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.72;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:78:760,78,0 chrXVI 512517 . C T 2624 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=28.22;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2657,247,0 chrXVI 512760 . T C 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=24.12;ReadPosRankSum=1.670;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2758,271,0 chrXVI 512940 . G A 2706 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.53;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2739,262,0 chrXVI 513417 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3051,298,0 chrXVI 513619 . G A 6483.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=18.8553;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=28.31;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,225:229:99:6483,616,0 chrXVI 513862 . T C 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=181;Dels=0.00;FS=5.901;HaplotypeScore=15.5314;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.461;QD=22.08;ReadPosRankSum=1.693;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3997,397,0 chrXVI 514290 . T A 2880 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.41;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2913,291,0 chrXVI 514323 . C A 2749 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.33;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2782,265,0 chrXVI 514359 . A G 2754 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.50;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2787,271,0 chrXVI 514428 . T C 2598 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.72;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2631,261,0 chrXVI 514493 . T C 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=104;Dels=0.00;FS=2.823;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.604;QD=26.88;ReadPosRankSum=2.402;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2829,280,0 chrXVI 514583 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=4.337;HaplotypeScore=9.7141;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.289;QD=26.50;ReadPosRankSum=1.706;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3524,352,0 chrXVI 514990 . G A 4108.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.5036;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.90;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4108,394,0 chrXVI 515057 . T C 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.039;QD=25.54;ReadPosRankSum=1.708;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3704,361,0 chrXVI 515138 . A G 3553.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=24.17;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:3553,352,0 chrXVI 515185 . C T 3900.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=22.03;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:3900,370,0 chrXVI 515189 . G A 3918.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=22.78;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3918,367,0 chrXVI 515196 . T C 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=176;Dels=0.00;FS=2.769;HaplotypeScore=11.2227;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=-0.565;QD=20.93;ReadPosRankSum=2.422;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3683,358,0 chrXVI 515243 . A G 3699.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=12.2639;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.26;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3699,367,0 chrXVI 516047 . T C 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.4855;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.481;QD=27.26;ReadPosRankSum=1.707;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3762,364,0 chrXVI 516356 . C T 5038.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.83;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5038,475,0 chrXVI 516710 . T C 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=109;Dels=0.00;FS=6.061;HaplotypeScore=11.9126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.333;QD=26.14;ReadPosRankSum=2.404;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2882,283,0 chrXVI 516780 . T C 3610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.348;DP=128;Dels=0.00;FS=8.231;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.007;QD=28.20;ReadPosRankSum=3.376;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:4,124:128:99:3610,349,0 chrXVI 516903 . C T 3487.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.90;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3487,331,0 chrXVI 517099 . C G 4430.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.5111;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.03;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4430,433,0 chrXVI 517188 . C T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.20;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3920,382,0 chrXVI 517281 . T C 4021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.411;QD=24.52;ReadPosRankSum=1.689;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:4021,397,0 chrXVI 517540 . A G 6371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=245;Dels=0.00;FS=11.622;HaplotypeScore=15.9514;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.996;QD=26.00;ReadPosRankSum=2.889;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:3,242:245:99:6371,625,0 chrXVI 517615 . G T 8523.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=24.6024;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.75;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,331:331:99:8523,836,0 chrXVI 517746 . A G 6326.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=12.7224;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.91;SB=-3.214e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:6326,628,0 chrXVI 517881 . G A 8972.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=19.1461;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.71;SB=-3.160e+03 GT:AD:DP:GQ:PL 1/1:0,348:349:99:8972,857,0 chrXVI 517980 . C T 5657.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=17.7172;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=26.68;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:5657,544,0 chrXVI 518014 . C G 5056.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.3516;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.41;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:5056,499,0 chrXVI 518057 . A T 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.316;QD=23.84;ReadPosRankSum=1.656;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4338,412,0 chrXVI 518836 . A G 4947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.659;DP=219;Dels=0.00;FS=7.929;HaplotypeScore=7.8278;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.168;QD=22.59;ReadPosRankSum=3.673;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:5,214:219:99:4947,481,0 chrXVI 519322 . A G 7594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=277;Dels=0.00;FS=3.106;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.088;QD=27.42;ReadPosRankSum=1.720;SB=-4.081e+03 GT:AD:DP:GQ:PL 1/1:1,275:277:99:7594,731,0 chrXVI 520400 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.44;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3332,319,0 chrXVI 520404 . G A 3114 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.34;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3147,304,0 chrXVI 520764 . G A 239.01 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.94;SB=-3.202e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:27:272,27,0 chrXVI 520832 . T C 257.01 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.36;SB=-3.102e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:27:290,27,0 chrXVI 521292 . T C 2388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.000;QD=27.77;ReadPosRankSum=1.692;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2421,234,0 chrXVI 521626 . C A 6047.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=14.3361;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=26.41;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:6047,583,0 chrXVI 521945 . C G 7875.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=15.9695;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=26.79;SB=-3.552e+03 GT:AD:DP:GQ:PL 1/1:0,293:294:99:7875,761,0 chrXVI 522079 . A C 1798.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.579;DP=346;Dels=0.02;FS=18.512;HaplotypeScore=41.6338;MLEAC=1;MLEAF=0.500;MQ=43.52;MQ0=0;MQRankSum=-3.370;QD=5.20;ReadPosRankSum=-0.309;SB=-1.306e+03 GT:AD:DP:GQ:PL 0/1:183,157:340:99:1828,0,991 chrXVI 522081 . T A 1793.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.404;DP=342;Dels=0.04;FS=23.334;HaplotypeScore=149.3555;MLEAC=1;MLEAF=0.500;MQ=43.29;MQ0=0;MQRankSum=-2.379;QD=5.24;ReadPosRankSum=-1.170;SB=-1.298e+03 GT:AD:DP:GQ:PL 0/1:176,153:329:99:1823,0,982 chrXVI 522090 . G A 1813.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.546;DP=322;Dels=0.01;FS=7.661;HaplotypeScore=40.5605;MLEAC=1;MLEAF=0.500;MQ=43.04;MQ0=0;MQRankSum=-7.651;QD=5.63;ReadPosRankSum=-3.057;SB=-7.910e+02 GT:AD:DP:GQ:PL 0/1:200,120:320:99:1843,0,1435 chrXVI 522094 . A C 735.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.726;DP=272;Dels=0.01;FS=5.323;HaplotypeScore=31.8903;MLEAC=1;MLEAF=0.500;MQ=44.35;MQ0=0;MQRankSum=-5.630;QD=2.70;ReadPosRankSum=0.975;SB=-3.560e+02 GT:AD:DP:GQ:PL 0/1:200,68:270:99:765,0,1629 chrXVI 522096 . T G 677.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.196;DP=268;Dels=0.01;FS=1.432;HaplotypeScore=27.5611;MLEAC=1;MLEAF=0.500;MQ=44.42;MQ0=0;MQRankSum=-8.406;QD=2.53;ReadPosRankSum=0.445;SB=-2.740e+02 GT:AD:DP:GQ:PL 0/1:201,65:266:99:707,0,1675 chrXVI 522099 . A G 595.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.390;DP=272;Dels=0.00;FS=0.664;HaplotypeScore=28.5161;MLEAC=1;MLEAF=0.500;MQ=44.55;MQ0=0;MQRankSum=-7.815;QD=2.19;ReadPosRankSum=-0.082;SB=-2.450e+02 GT:AD:DP:GQ:PL 0/1:209,63:272:99:625,0,1874 chrXVI 522102 . A G 464.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.323;DP=273;Dels=0.00;FS=1.434;HaplotypeScore=23.8129;MLEAC=1;MLEAF=0.500;MQ=44.95;MQ0=0;MQRankSum=-6.502;QD=1.70;ReadPosRankSum=-0.973;SB=-2.380e+02 GT:AD:DP:GQ:PL 0/1:213,60:273:99:494,0,1944 chrXVI 522104 . C A 345.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.078;DP=265;Dels=0.00;FS=8.230;HaplotypeScore=19.5732;MLEAC=1;MLEAF=0.500;MQ=45.80;MQ0=0;MQRankSum=-7.870;QD=1.30;ReadPosRankSum=-3.229;SB=-2.810e+02 GT:AD:DP:GQ:PL 0/1:200,65:265:99:375,0,1914 chrXVI 522105 . A G 315.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.043;DP=266;Dels=0.00;FS=2.362;HaplotypeScore=15.8599;MLEAC=1;MLEAF=0.500;MQ=45.98;MQ0=0;MQRankSum=-8.213;QD=1.18;ReadPosRankSum=-2.983;SB=-2.140e+02 GT:AD:DP:GQ:PL 0/1:206,60:266:99:345,0,2106 chrXVI 522108 . A G 575.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.761;DP=266;Dels=0.00;FS=3.334;HaplotypeScore=13.9852;MLEAC=1;MLEAF=0.500;MQ=46.43;MQ0=0;MQRankSum=-9.272;QD=2.16;ReadPosRankSum=-4.399;SB=-2.750e+02 GT:AD:DP:GQ:PL 0/1:204,62:266:99:605,0,2171 chrXVI 522118 . C A 331.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.858;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=13.6402;MLEAC=1;MLEAF=0.500;MQ=50.16;MQ0=0;MQRankSum=-7.610;QD=1.35;ReadPosRankSum=-4.602;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:206,39:245:99:361,0,2590 chrXVI 522120 . G T 257.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.782;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=12.0009;MLEAC=1;MLEAF=0.500;MQ=50.85;MQ0=0;MQRankSum=-8.163;QD=1.07;ReadPosRankSum=-5.797;SB=-8.801e+01 GT:AD:DP:GQ:PL 0/1:201,39:240:99:287,0,2724 chrXVI 523110 . G A 4577.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.8787;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.71;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4577,439,0 chrXVI 523433 . C G 3819.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.9827;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=24.96;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3819,367,0 chrXVI 523446 . G A 3635.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=25.24;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3635,349,0 chrXVI 523583 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.99;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3430,334,0 chrXVI 523689 . G A 2431 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=22.72;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2464,232,0 chrXVI 523692 . T C 2393 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=22.58;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2426,237,0 chrXVI 523749 . T C 1986 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.07;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2019,201,0 chrXVI 526107 . C T 3437.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.20;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3437,328,0 chrXVI 526381 . A G 2741 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.04;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2774,268,0 chrXVI 526767 . A G 4611.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.50;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4611,457,0 chrXVI 527231 . G A 5239.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.81;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5239,493,0 chrXVI 527307 . T C 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=4.202;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.993;QD=24.11;ReadPosRankSum=1.686;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3665,355,0 chrXVI 528593 . T C 4376.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.45;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4376,448,0 chrXVI 529663 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.2148;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.59;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3404,319,0 chrXVI 530286 . A G 4691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=187;Dels=0.00;FS=3.695;HaplotypeScore=10.3815;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.927;QD=25.09;ReadPosRankSum=1.713;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4691,478,0 chrXVI 530370 . A G 5084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.737;QD=25.81;ReadPosRankSum=1.714;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:5084,496,0 chrXVI 530807 . G C 4083.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.90;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4083,394,0 chrXVI 531193 . A G 2980 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.34;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3013,292,0 chrXVI 531957 . G A 3993.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.98;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3993,385,0 chrXVI 532319 . T C 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.233;QD=25.58;ReadPosRankSum=1.703;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:3052,295,0 chrXVI 533286 . A C 2737 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.9982;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.44;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2770,265,0 chrXVI 533472 . T A 414 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=27.60;SB=-9.000e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:42:447,42,0 chrXVI 533561 . G A 1105 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=25.11;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1138,108,0 chrXVI 533565 . G A 1069 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1102,102,0 chrXVI 533888 . T G 4208.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=19.6566;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.51;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4208,406,0 chrXVI 534427 . A C 5897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=239;Dels=0.00;FS=6.725;HaplotypeScore=16.2300;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.490;QD=24.67;ReadPosRankSum=2.408;SB=-3.074e+03 GT:AD:DP:GQ:PL 1/1:2,236:239:99:5897,586,0 chrXVI 534572 . C T 6111.01 SnpCluster AC=2;AF=1.00;AN=2;DP=270;Dels=0.01;FS=0.000;HaplotypeScore=9.2324;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=22.63;SB=-3.597e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:6111,607,0 chrXVI 534574 . A G 6188.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.396;DP=268;Dels=0.00;FS=12.808;HaplotypeScore=5.2975;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.530;QD=23.09;ReadPosRankSum=3.351;SB=-3.755e+03 GT:AD:DP:GQ:PL 1/1:4,264:268:99:6188,592,0 chrXVI 534581 . T C 5803.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=268;Dels=0.00;FS=3.007;HaplotypeScore=5.0836;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=0.334;QD=21.65;ReadPosRankSum=2.395;SB=-3.670e+03 GT:AD:DP:GQ:PL 1/1:2,266:268:99:5803,580,0 chrXVI 534748 . A T 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=187;Dels=0.00;FS=4.523;HaplotypeScore=2.4983;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=-0.806;QD=18.75;ReadPosRankSum=1.658;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3506,411,0 chrXVI 534749 . G A 3586.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.01;FS=0.000;HaplotypeScore=2.4983;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=18.97;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3586,423,0 chrXVI 534894 . T C 4821.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.01;FS=0.000;HaplotypeScore=20.2798;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.92;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4821,487,0 chrXVI 535611 . A G 2304 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2337,225,0 chrXVI 535979 . G T 2992 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.33;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3025,286,0 chrXVI 536756 . C T 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=218;Dels=0.01;FS=44.455;HaplotypeScore=197.8754;MLEAC=2;MLEAF=1.00;MQ=63.73;MQ0=1;MQRankSum=3.608;QD=13.15;ReadPosRankSum=3.382;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:15,198:215:99:2900,291,0 chrXVI 538056 . A T 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.0717;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.069;QD=26.42;ReadPosRankSum=1.677;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3303,313,0 chrXVI 538784 . A G 3541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.2831;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.300;QD=26.23;ReadPosRankSum=1.706;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:3541,352,0 chrXVI 540311 . C G 5251.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.65;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:5251,517,0 chrXVI 541340 . T C 4282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=163;Dels=0.00;FS=6.212;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.053;QD=26.27;ReadPosRankSum=2.358;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:4282,412,0 chrXVI 542195 . C T 4789.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=27.21;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4789,460,0 chrXVI 542298 . T C 4785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=206;Dels=0.00;FS=3.948;HaplotypeScore=6.3035;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=1.228;QD=23.23;ReadPosRankSum=1.682;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4785,466,0 chrXVI 542310 . C T 4720.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.37;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4720,451,0 chrXVI 543937 . A G 4192.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.76;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:4192,406,0 chrXVI 543981 . C T 4996.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2365;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=28.39;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4996,490,0 chrXVI 544798 . A T 5557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=212;Dels=0.00;FS=9.471;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.398;QD=26.21;ReadPosRankSum=2.948;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:3,209:212:99:5557,541,0 chrXVI 546309 . C T 4051.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=27.19;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4051,382,0 chrXVI 549254 . A G 4548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=170;Dels=0.00;FS=3.561;HaplotypeScore=16.9781;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.134;QD=26.75;ReadPosRankSum=0.371;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:4548,442,0 chrXVI 549906 . G C 4188.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:4188,406,0 chrXVI 550760 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.283;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.1392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.206;QD=25.80;ReadPosRankSum=3.383;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:4,136:140:99:3612,352,0 chrXVI 550866 . G A 3506.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3506,346,0 chrXVI 552585 . C T 5048.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.8495;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.29;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:5048,490,0 chrXVI 553465 . G A 3707.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=27.66;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3707,352,0 chrXVI 554350 . C A 4321.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.5510;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.87;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4321,409,0 chrXVI 554599 . A G 4705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=5.836;HaplotypeScore=10.1389;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.468;QD=25.57;ReadPosRankSum=1.713;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4705,478,0 chrXVI 554689 . G A 4476.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=16.5886;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.87;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4476,448,0 chrXVI 555508 . C T 2122 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2155,204,0 chrXVI 555982 . A C 140.13 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-2.388e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:18:173,18,0 chrXVI 556329 . T C 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=126;Dels=0.00;FS=3.045;HaplotypeScore=15.9551;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.459;QD=25.34;ReadPosRankSum=2.411;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:3226,322,0 chrXVI 556778 . C A 4982.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=16.0263;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4982,484,0 chrXVI 560045 . G T 1370 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.57;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1403,141,0 chrXVI 560134 . A C 1325 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1358,132,0 chrXVI 560326 . C T 1793 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=27.17;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1826,177,0 chrXVI 560764 . C T 2228 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=41.56;MQ0=5;QD=20.63;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2261,219,0 chrXVI 561360 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=28.50;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2712,256,0 chrXVI 561434 . T A 1782 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1815,174,0 chrXVI 563126 . G T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.96;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3972,382,0 chrXVI 563274 . A G 6475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=242;Dels=0.00;FS=9.913;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.775;QD=26.76;ReadPosRankSum=2.429;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:2,238:242:99:6475,637,0 chrXVI 563468 . A C 5099.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=11.3972;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=20.98;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5099,505,0 chrXVI 564316 . C T 4851.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=18.1885;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.90;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4851,454,0 chrXVI 564355 . A G 4426.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.8177;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.17;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4426,436,0 chrXVI 564521 . A C 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=151;Dels=0.00;FS=2.909;HaplotypeScore=11.9842;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.106;QD=24.00;ReadPosRankSum=2.335;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3624,352,0 chrXVI 565119 . T A 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;DP=95;Dels=0.00;FS=2.998;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.583;QD=25.04;ReadPosRankSum=2.372;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2412,237,0 chrXVI 565474 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3239,310,0 chrXVI 565674 . G A 3046 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.20;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:3079,295,0 chrXVI 565783 . T A 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.018;QD=25.16;ReadPosRankSum=1.696;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2474,235,0 chrXVI 566316 . G A 4111.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=17.5190;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.77;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:4111,403,0 chrXVI 566571 . A G 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.746;QD=26.00;ReadPosRankSum=1.708;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3770,364,0 chrXVI 568030 . C T 4428.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=16.2314;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.36;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4428,421,0 chrXVI 568274 . T A 5345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=212;Dels=0.00;FS=3.051;HaplotypeScore=16.6202;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.703;QD=25.21;ReadPosRankSum=1.634;SB=-3.019e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:5345,529,0 chrXVI 569605 . C T 4572.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.30;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4572,451,0 chrXVI 571946 . C T 4278.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.4372;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=27.42;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4278,409,0 chrXVI 572749 . C G 1542 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.68;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1575,156,0 chrXVI 575759 . C T 3651.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=28.52;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3651,352,0 chrXVI 576040 . C A 3429.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.5452;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.40;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3429,325,0 chrXVI 576347 . G C 2943 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=25.82;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2976,295,0 chrXVI 577654 . C T 4024.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.01;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4024,388,0 chrXVI 577723 . A C 4249.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.07;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4249,415,0 chrXVI 581662 . T G 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.697;QD=25.07;ReadPosRankSum=1.687;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3861,370,0 chrXVI 581829 . A G 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=3.766;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.420;QD=24.38;ReadPosRankSum=1.630;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4145,406,0 chrXVI 582741 . A T 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=109;Dels=0.00;FS=8.560;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.011;QD=27.29;ReadPosRankSum=2.405;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:3008,286,0 chrXVI 585153 . A G 6830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.691;DP=274;Dels=0.00;FS=4.792;HaplotypeScore=26.6619;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.025;QD=24.93;ReadPosRankSum=3.765;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:5,269:274:99:6830,661,0 chrXVI 586275 . G A 3903.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3903,376,0 chrXVI 586468 . C T 3481.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.85;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3481,331,0 chrXVI 586527 . C T 4223.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.2816;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=27.07;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:4223,403,0 chrXVI 586678 . A G 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;MQRankSum=-0.042;QD=24.58;ReadPosRankSum=1.704;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3056,292,0 chrXVI 586809 . G A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=25.76;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3889,373,0 chrXVI 586836 . G C 3785.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.8118;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=25.75;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3785,367,0 chrXVI 588991 . A G 4346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=176;Dels=0.00;FS=2.814;HaplotypeScore=14.8573;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.565;QD=24.69;ReadPosRankSum=2.394;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:4346,430,0 chrXVI 590543 . G C 5467.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=17.3240;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-3.106e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:5467,526,0 chrXVI 591618 . T G 1548 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1581,156,0 chrXVI 591766 . C T 397 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=17.26;SB=-6.601e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:42:430,42,0 chrXVI 591786 . C A 601 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=19.39;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:60:634,60,0 chrXVI 592674 . T C 6428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=262;Dels=0.00;FS=3.163;HaplotypeScore=15.1509;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.533;QD=24.53;ReadPosRankSum=1.706;SB=-3.663e+03 GT:AD:DP:GQ:PL 1/1:1,260:262:99:6428,634,0 chrXVI 593438 . T C 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.546;QD=25.85;ReadPosRankSum=1.695;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2437,240,0 chrXVI 593876 . T C 5215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.994;QD=26.47;ReadPosRankSum=1.697;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:5215,514,0 chrXVI 594508 . G A 5021.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.29;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:5021,472,0 chrXVI 594747 . A G 6815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.793;DP=256;Dels=0.00;FS=15.932;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.031;QD=26.62;ReadPosRankSum=3.793;SB=-3.591e+03 GT:AD:DP:GQ:PL 1/1:5,249:256:99:6815,667,0 chrXVI 595496 . C G 3889.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=16.9626;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.42;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3889,379,0 chrXVI 599378 . G A 4383.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.56;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4383,412,0 chrXVI 600285 . T G 2429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=3.324;HaplotypeScore=3.5441;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.927;QD=28.24;ReadPosRankSum=1.692;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2462,238,0 chrXVI 600385 . A G 1357 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.62;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1390,135,0 chrXVI 600533 . G T 1049 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.80;SB=-6.701e+01 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1082,105,0 chrXVI 600670 . G A 1849 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.89;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1882,180,0 chrXVI 600877 . C A 2891 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=23.89;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2924,289,0 chrXVI 602623 . C T 2376 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1659;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=27.95;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2409,232,0 chrXVI 603616 . G A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.1587;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4204,421,0 chrXVI 603836 . A T 4508.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=26.99;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4508,433,0 chrXVI 604022 . G A 3003 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.83;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3036,301,0 chrXVI 604091 . C T 4453.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=24.20;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4453,430,0 chrXVI 604106 . G T 4930.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=24.53;SB=-3.026e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4930,466,0 chrXVI 605672 . T C 3011 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=27.37;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3044,295,0 chrXVI 606386 . C T 922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.729;DP=185;Dels=0.00;FS=2.697;HaplotypeScore=9.5949;MLEAC=2;MLEAF=1.00;MQ=46.13;MQ0=0;MQRankSum=0.714;QD=4.98;ReadPosRankSum=1.649;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:955,102,0 chrXVI 606814 . C T 4584.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=24.91;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4584,430,0 chrXVI 606832 . C G 4915.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.58;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,193:200:99:4915,478,0 chrXVI 607353 . C T 1765 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1798,183,0 chrXVI 607478 . A C 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.052;DP=74;Dels=0.01;FS=1.234;HaplotypeScore=248.5603;MLEAC=1;MLEAF=0.500;MQ=54.94;MQ0=0;MQRankSum=1.690;QD=0.27;ReadPosRankSum=-3.929;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:61,11:73:50:50,0,58 chrXVI 607854 . C T 1624 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=15.04;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1657,168,0 chrXVI 608318 . G T 3682.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=10.9432;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.30;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3682,349,0 chrXVI 608420 . T A 4205.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.28;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4205,400,0 chrXVI 608778 . C T 3707.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.7953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.46;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3707,352,0 chrXVI 609546 . A G 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.736;DP=179;Dels=0.00;FS=5.801;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.174;QD=17.19;ReadPosRankSum=2.815;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:3110,298,0 chrXVI 609547 . A G 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.175;DP=179;Dels=0.00;FS=8.382;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-1.369;QD=17.66;ReadPosRankSum=3.263;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:4,174:179:99:3194,310,0 chrXVI 610056 . C T 5378.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.5720;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.69;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5378,508,0 chrXVI 610123 . A T 6429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=273;Dels=0.00;FS=7.531;HaplotypeScore=12.6959;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.544;QD=23.55;ReadPosRankSum=2.387;SB=-3.368e+03 GT:AD:DP:GQ:PL 1/1:2,271:273:99:6429,613,0 chrXVI 610143 . G T 6254.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=5.8542;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.96;SB=-3.062e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:6254,604,0 chrXVI 610223 . C T 4661.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=17.3787;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.31;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4661,460,0 chrXVI 610298 . G A 4718.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.2248;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.21;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4718,451,0 chrXVI 610543 . T C 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=2.660;HaplotypeScore=8.0955;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.146;QD=25.31;ReadPosRankSum=2.398;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3645,352,0 chrXVI 610743 . C A 5730.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=20.3416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-3.129e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5730,547,0 chrXVI 611083 . T C 5986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=234;Dels=0.00;FS=6.992;HaplotypeScore=9.8658;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.032;QD=25.58;ReadPosRankSum=2.407;SB=-3.099e+03 GT:AD:DP:GQ:PL 1/1:2,230:234:99:5986,586,0 chrXVI 611497 . T G 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.388;DP=173;Dels=0.00;FS=213.751;HaplotypeScore=22.5085;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-0.012;QD=0.29;ReadPosRankSum=-2.050;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:127,41:173:80:80,0,2623 chrXVI 612448 . C T 5609.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=16.7021;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.97;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:5609,538,0 chrXVI 613348 . A T 395 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=14.63;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:42:428,42,0 chrXVI 613369 . G A 986 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.48;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:96:1019,96,0 chrXVI 613944 . C T 3971.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.6538;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=27.20;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3971,388,0 chrXVI 614103 . A G 3189 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.80;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3222,313,0 chrXVI 614208 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.9334;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3056,307,0 chrXVI 614321 . T C 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.926;QD=26.28;ReadPosRankSum=-1.598;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3390,331,0 chrXVI 615470 . G A 3139 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=28.54;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3172,298,0 chrXVI 616089 . G A 5862.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.16;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5862,586,0 chrXVI 616534 . G A 1756 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.9536;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.81;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1789,171,0 chrXVI 618453 . G A 4128.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=26.29;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4128,391,0 chrXVI 618585 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3398;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.96;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:3559,340,0 chrXVI 619798 . G A 2934 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.6885;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.67;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2967,289,0 chrXVI 620106 . C T 2989 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=28.20;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3022,283,0 chrXVI 620246 . A C 918 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=37.0296;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=16.39;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:93:951,93,0 chrXVI 620602 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.88;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2969,286,0 chrXVI 620615 . G A 3090 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=26.87;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:3123,295,0 chrXVI 623824 . C G 3544.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:3544,352,0 chrXVI 624238 . G C 4535.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.06;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4535,436,0 chrXVI 624739 . G A 5170.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=28.25;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:5170,490,0 chrXVI 625483 . C A 1845 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.27;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1878,183,0 chrXVI 625519 . G C 1555 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1588,153,0 chrXVI 626374 . G A 4172.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.1304;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.63;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:4172,397,0 chrXVI 627372 . T C 3327.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=26.40;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3327,325,0 chrXVI 627426 . G A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.9277;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.91;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3276,322,0 chrXVI 627537 . C G 2331 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.27;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2364,249,0 chrXVI 627554 . G T 2354 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.1485;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.78;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2387,243,0 chrXVI 629082 . G A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.08;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3312,319,0 chrXVI 629640 . G C 3789.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.0859;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=27.26;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3789,373,0 chrXVI 629712 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=22.91;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3665,358,0 chrXVI 629722 . A C 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.888;QD=21.34;ReadPosRankSum=1.689;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3500,346,0 chrXVI 630078 . T C 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.1923;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.176;QD=26.59;ReadPosRankSum=1.682;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3670,361,0 chrXVI 631047 . G A 3899.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.37;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3899,373,0 chrXVI 631328 . A C 214.46 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;DP=59;Dels=0.00;FS=7.122;HaplotypeScore=19.4014;MLEAC=1;MLEAF=0.500;MQ=38.28;MQ0=0;MQRankSum=-2.149;QD=3.63;ReadPosRankSum=0.757;SB=-2.246e+01 GT:AD:DP:GQ:PL 0/1:42,16:59:1:243,0,1 chrXVI 631883 . A T 4373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.1832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.835;QD=25.72;ReadPosRankSum=1.671;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4373,424,0 chrXVI 631944 . G A 3410.01 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=29.15;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3410,325,0 chrXVI 634983 . C T 6869.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=18.4506;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=27.59;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:6869,673,0 chrXVI 635876 . T C 5406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=201;Dels=0.00;FS=2.857;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.197;QD=26.90;ReadPosRankSum=2.388;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:2,196:201:99:5406,526,0 chrXVI 640589 . A G 4111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=196;Dels=0.00;FS=4.704;HaplotypeScore=25.4392;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.534;QD=20.97;ReadPosRankSum=1.714;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,191:196:99:4111,421,0 chrXVI 640757 . G A 6931.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=17.9920;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.77;SB=-3.127e+03 GT:AD:DP:GQ:PL 1/1:0,266:269:99:6931,659,0 chrXVI 644123 . G A 6481.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.3139;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-3.659e+03 GT:AD:DP:GQ:PL 1/1:0,245:249:99:6481,631,0 chrXVI 647721 . T C 4667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.6565;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.365;QD=24.56;ReadPosRankSum=1.659;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4667,457,0 chrXVI 648617 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.82;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2796,268,0 chrXVI 653824 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.97;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3324,316,0 chrXVI 654064 . G A 4605.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.60;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4605,439,0 chrXVI 654359 . A G 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.318;DP=149;Dels=0.00;FS=9.209;HaplotypeScore=12.0869;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.018;QD=25.07;ReadPosRankSum=3.353;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:4,145:149:99:3736,370,0 chrXVI 656677 . C T 6193.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=13.1441;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.13;SB=-3.430e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:6193,583,0 chrXVI 656911 . A G 5041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.351;DP=192;Dels=0.00;FS=8.220;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.932;QD=26.26;ReadPosRankSum=3.387;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:4,188:192:99:5041,487,0 chrXVI 656948 . G T 5063.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.6600;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=27.07;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:5063,481,0 chrXVI 657151 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.24;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3332,319,0 chrXVI 657450 . G T 2135 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.24;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2168,213,0 chrXVI 657545 . T C 2108 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.35;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2141,210,0 chrXVI 659088 . A G 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=152;Dels=0.00;FS=10.333;HaplotypeScore=19.2185;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.155;QD=22.36;ReadPosRankSum=2.400;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3398,340,0 chrXVI 659394 . C T 6414.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=24.9829;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.93;SB=-3.248e+03 GT:AD:DP:GQ:PL 1/1:0,264:268:99:6414,637,0 chrXVI 659469 . C G 4553.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=26.47;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4553,448,0 chrXVI 661094 . C T 1509 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1542,150,0 chrXVI 661272 . T C 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.719;QD=27.30;ReadPosRankSum=2.413;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3685,358,0 chrXVI 662450 . C T 4339.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.3788;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.84;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4339,412,0 chrXVI 663036 . A G 2781 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2814,274,0 chrXVI 663549 . C T 3696.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.59;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3696,355,0 chrXVI 664333 . T G 3867.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.13;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3867,379,0 chrXVI 664479 . T C 4928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=181;Dels=0.00;FS=2.581;HaplotypeScore=8.4767;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.579;QD=27.23;ReadPosRankSum=2.905;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:3,176:181:99:4928,481,0 chrXVI 664738 . T C 4240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=157;Dels=0.00;FS=3.155;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.464;QD=27.01;ReadPosRankSum=1.619;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:1,152:157:99:4240,412,0 chrXVI 665441 . A G 2019 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2052,195,0 chrXVI 665472 . T C 1764 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1797,183,0 chrXVI 665628 . T C 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.194;QD=27.86;ReadPosRankSum=2.404;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:2,106:108:99:3042,292,0 chrXVI 665970 . A G 5244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=197;Dels=0.00;FS=6.750;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.108;QD=26.62;ReadPosRankSum=2.424;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:2,192:197:99:5244,508,0 chrXVI 666286 . T C 5816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=17.7298;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.301;QD=23.84;ReadPosRankSum=1.646;SB=-3.167e+03 GT:AD:DP:GQ:PL 1/1:1,240:244:99:5816,586,0 chrXVI 666924 . T C 4894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=3.420;HaplotypeScore=7.3539;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.559;QD=25.76;ReadPosRankSum=1.604;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4894,487,0 chrXVI 668461 . T C 3782.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.5028;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.38;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,145:149:99:3782,364,0 chrXVI 669067 . C T 3305.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.87;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3305,328,0 chrXVI 670194 . T G 3073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=3.123;HaplotypeScore=9.0366;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.370;QD=26.26;ReadPosRankSum=1.614;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:3106,304,0 chrXVI 675869 . A C 861 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:87:894,87,0 chrXVI 681149 . T A 1372 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.204;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.497;QD=23.25;ReadPosRankSum=1.674;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1405,144,0 chrXVI 686122 . G A 4370.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.6919;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.33;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4370,412,0 chrXVI 687687 . C T 4457.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.91;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4457,418,0 chrXVI 688677 . G A 3028 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.28;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:3061,289,0 chrXVI 688937 . C A 4460.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=27.36;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4460,421,0 chrXVI 689525 . T A 2055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.004;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.015;QD=24.76;ReadPosRankSum=2.391;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:2088,207,0 chrXVI 691402 . A G 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=144;Dels=0.00;FS=2.693;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-2.003;QD=25.22;ReadPosRankSum=2.398;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3632,355,0 chrXVI 691472 . G C 3967.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3967,388,0 chrXVI 692056 . A G 4371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=174;Dels=0.00;FS=2.964;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.493;QD=25.12;ReadPosRankSum=2.421;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:4371,436,0 chrXVI 693803 . A G 4596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=181;Dels=0.00;FS=3.366;HaplotypeScore=13.5608;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.187;QD=25.39;ReadPosRankSum=1.693;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:4596,442,0 chrXVI 694928 . G A 5192.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5192,499,0 chrXVI 695201 . A C 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.126;QD=23.27;ReadPosRankSum=1.404;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2988,300,0 chrXVI 695543 . G C 3388.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.67;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3388,328,0 chrXVI 697060 . C T 4841.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.45;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4841,457,0 chrXVI 697573 . A T 4636.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.5025;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.61;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4636,448,0 chrXVI 697775 . C T 4579.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.47;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4579,442,0 chrXVI 698565 . A G 1392 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.20;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1425,144,0 chrXVI 698946 . T C 4579.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=27.58;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4579,454,0 chrXVI 700285 . T C 1914 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,90:93:99:1947,189,0 chrXVI 700480 . C T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.6132;MLEAC=2;MLEAF=1.00;MQ=44.13;MQ0=0;QD=28.21;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3809,367,0 chrXVI 703512 . A G 4768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=191;Dels=0.00;FS=9.960;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.455;QD=24.96;ReadPosRankSum=2.942;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:3,187:191:99:4768,454,0 chrXVI 704396 . G C 6208.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=13.6751;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.97;SB=-3.242e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:6208,601,0 chrXVI 705160 . A G 5174.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.52;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5174,505,0 chrXVI 706238 . A G 9575.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.734;DP=370;Dels=0.00;FS=18.717;HaplotypeScore=33.9133;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.919;QD=25.88;ReadPosRankSum=3.806;SB=-4.444e+03 GT:AD:DP:GQ:PL 1/1:5,364:370:99:9575,926,0 chrXVI 707772 . C A 4536.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.4945;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=27.00;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4536,430,0 chrXVI 707796 . T A 4153.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.2421;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=25.64;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4153,409,0 chrXVI 711113 . A G 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7318;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=2.010;QD=22.95;ReadPosRankSum=2.406;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2603,256,0 chrXVI 711619 . C G 8110.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=20.3864;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.50;SB=-3.589e+03 GT:AD:DP:GQ:PL 1/1:0,314:318:99:8110,800,0 chrXVI 717249 . C T 3080 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.78;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:3113,298,0 chrXVI 718261 . G C 3947.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=27.03;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3947,376,0 chrXVI 718947 . T C 3042 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=27.16;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3075,298,0 chrXVI 720561 . C A 4988.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.41;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4988,472,0 chrXVI 720834 . A T 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.370;QD=21.69;ReadPosRankSum=1.629;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1486,141,0 chrXVI 722078 . C G 2766 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.48;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2799,274,0 chrXVI 724121 . A G 5195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.520;QD=24.28;ReadPosRankSum=1.699;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:5195,502,0 chrXVI 724279 . T C 4289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.724;DP=190;Dels=0.00;FS=7.880;HaplotypeScore=4.7503;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-1.943;QD=22.57;ReadPosRankSum=3.691;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:5,184:190:99:4289,421,0 chrXVI 724286 . C T 4361.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=23.07;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4361,421,0 chrXVI 725082 . A T 5191.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.6913;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.62;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5191,505,0 chrXVI 725291 . T A 5665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=223;Dels=0.00;FS=3.893;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.287;QD=25.40;ReadPosRankSum=1.717;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:5665,547,0 chrXVI 725710 . G A 5405.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.7174;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.24;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5405,514,0 chrXVI 726358 . G A 4883.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.6192;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=26.83;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4883,466,0 chrXVI 726370 . T C 4329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.485;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=0.458;QD=24.74;ReadPosRankSum=1.712;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4329,427,0 chrXVI 726386 . C T 3983.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=24.89;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3983,379,0 chrXVI 726480 . A G 4235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=3.326;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.320;QD=26.97;ReadPosRankSum=1.666;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:4235,409,0 chrXVI 730292 . T C 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.199;QD=26.25;ReadPosRankSum=1.703;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:3104,307,0 chrXVI 732154 . C T 3865.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5917;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=26.11;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3865,364,0 chrXVI 732684 . C A 4645.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=17.5739;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.94;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4645,463,0 chrXVI 733425 . G A 1503 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.36;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1536,141,0 chrXVI 734148 . T A 5891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=249;Dels=0.00;FS=5.080;HaplotypeScore=27.7905;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.559;QD=23.66;ReadPosRankSum=1.690;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:1,247:249:99:5891,565,0 chrXVI 736455 . A G 3679.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=24.20;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3679,355,0 chrXVI 736469 . T C 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=5.401;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=0.882;QD=22.23;ReadPosRankSum=1.711;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3646,349,0 chrXVI 736718 . C G 2640 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=26.67;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2673,265,0 chrXVI 737218 . C T 4448.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.8357;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.31;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4448,424,0 chrXVI 737361 . T G 4398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.106;QD=26.34;ReadPosRankSum=-0.689;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:4398,427,0 chrXVI 738241 . A G 2995 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.77;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3028,295,0 chrXVI 739339 . C T 4165.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.55;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:4165,409,0 chrXVI 739738 . G A 4789.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4789,448,0 chrXVI 740140 . G A 3865.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.1948;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.42;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3865,370,0 chrXVI 741532 . T C 4605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=184;Dels=0.00;FS=2.730;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.268;QD=25.03;ReadPosRankSum=2.369;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:4605,448,0 chrXVI 741944 . C G 3517.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.8058;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.49;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3517,346,0 chrXVI 742069 . T A 3184 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.07;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3217,310,0 chrXVI 742334 . A G 3679.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.46;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3679,361,0 chrXVI 742567 . T C 4256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.430;HaplotypeScore=11.4306;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.372;QD=26.11;ReadPosRankSum=1.711;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4256,430,0 chrXVI 742701 . A G 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.256;QD=25.28;ReadPosRankSum=1.642;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2940,283,0 chrXVI 743101 . C G 4474.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:4474,445,0 chrXVI 743245 . A G 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.611;DP=161;Dels=0.00;FS=17.510;HaplotypeScore=6.9320;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.174;QD=23.96;ReadPosRankSum=3.718;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:5,156:161:99:3857,385,0 chrXVI 743344 . C T 5196.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5196,490,0 chrXVI 743518 . C T 5965.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.14;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5965,577,0 chrXVI 743973 . G A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=27.21;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3565,352,0 chrXVI 744161 . G A 4096.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.9739;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=25.76;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4096,385,0 chrXVI 744198 . A C 3153 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=24.44;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3186,310,0 chrXVI 744403 . A C 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=3.358;HaplotypeScore=5.4514;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=-0.036;QD=22.74;ReadPosRankSum=1.708;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3274,322,0 chrXVI 744410 . A C 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=3.749;HaplotypeScore=12.5592;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=-0.365;QD=21.68;ReadPosRankSum=1.709;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3241,316,0 chrXVI 744459 . A G 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=160;Dels=0.00;FS=5.085;HaplotypeScore=13.1773;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.622;QD=23.79;ReadPosRankSum=1.688;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3806,367,0 chrXVI 744531 . A G 4115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=4.713;HaplotypeScore=7.4197;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.468;QD=27.80;ReadPosRankSum=1.685;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:4115,412,0 chrXVI 744598 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=26.67;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3547,340,0 chrXVI 744716 . G A 4880.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=28.71;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4880,463,0 chrXVI 744906 . G A 4182.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=27.70;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4182,391,0 chrXVI 744935 . C A 3551.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=26.90;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3551,340,0 chrXVI 745879 . C T 2843 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=24.51;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2876,274,0 chrXVI 745885 . G A 2695 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=23.85;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2728,262,0 chrXVI 745923 . C A 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=1.520;QD=23.07;ReadPosRankSum=-0.672;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2317,217,0 chrXVI 746530 . G A 4867.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.45;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4867,466,0 chrXVI 747237 . G A 4651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.478;QD=28.53;ReadPosRankSum=-0.946;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4651,422,0 chrXVI 747487 . A G 4155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.544;QD=25.03;ReadPosRankSum=1.669;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4155,400,0 chrXVI 748400 . C T 5322.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=28.61;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:5322,502,0 chrXVI 748650 . C T 3903.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.37;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3903,370,0 chrXVI 748874 . C T 3631.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.0504;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.31;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3631,358,0 chrXVI 748946 . C T 4806.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.4721;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.85;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4806,460,0 chrXVI 749787 . A G 4781.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.77;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4781,487,0 chrXVI 749875 . C T 5334.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=16.1760;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.16;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:5334,505,0 chrXVI 750029 . C T 4042.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.4723;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.58;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4042,385,0 chrXVI 750118 . C T 3938.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.43;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3938,367,0 chrXVI 750369 . C T 4169.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.1987;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.06;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4169,409,0 chrXVI 750734 . A G 3961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=143;Dels=0.00;FS=8.191;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.473;QD=27.70;ReadPosRankSum=2.415;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3961,382,0 chrXVI 750943 . C G 5403.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.4199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.75;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5403,517,0 chrXVI 751308 . T A 4696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.539;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.4041;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.117;QD=23.60;ReadPosRankSum=1.697;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4696,454,0 chrXVI 752166 . C A 2111 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2144,204,0 chrXVI 752294 . A G 3673.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.4078;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.05;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3673,355,0 chrXVI 752508 . T C 5323.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.66;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5323,538,0 chrXVI 753099 . G A 1650 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.15;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1683,159,0 chrXVI 753173 . G A 1406 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=41.5599;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=26.04;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1439,135,0 chrXVI 753479 . A C 4193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=158;Dels=0.00;FS=6.746;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.643;QD=26.54;ReadPosRankSum=1.710;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,155:158:99:4193,403,0 chrXVI 753640 . C T 4540.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=27.19;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4540,433,0 chrXVI 754681 . G A 4012.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.9965;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=25.72;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4012,388,0 chrXVI 754744 . T A 3818.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.33;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3818,373,0 chrXVI 754869 . A G 4995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=183;Dels=0.00;FS=9.984;HaplotypeScore=13.3761;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.007;QD=27.30;ReadPosRankSum=2.423;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:4995,478,0 chrXVI 755194 . C T 3492.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.12;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3492,328,0 chrXVI 755692 . C T 4108.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4108,409,0 chrXVI 755818 . C T 4074.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.62;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4074,400,0 chrXVI 756190 . C T 3955.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.85;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3955,376,0 chrXVI 756770 . G A 4647.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.85;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4647,439,0 chrXVI 757135 . G T 4603.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=28.41;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4603,436,0 chrXVI 758824 . G T 1988 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.2177;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.82;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2021,192,0 chrXVI 759400 . T G 3965.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.18;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3965,382,0 chrXVI 759469 . T G 4657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=173;Dels=0.00;FS=4.527;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.171;QD=26.92;ReadPosRankSum=1.712;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4657,451,0 chrXVI 759676 . C T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.99;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3405,322,0 chrXVI 766340 . C A 4172.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.54;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4172,403,0 chrXVI 767513 . C T 1701 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1734,165,0 chrXVI 767904 . A G 4794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;MQRankSum=0.206;QD=27.08;ReadPosRankSum=1.713;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4794,454,0 chrXVI 768045 . G A 4472.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=26.31;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4472,424,0 chrXVI 769084 . A G 3109 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.73;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:3142,313,0 chrXVI 770260 . A C 4237.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.68;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4237,412,0 chrXVI 775873 . T G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=107;Dels=0.00;FS=2.852;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.541;QD=25.70;ReadPosRankSum=2.404;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2783,274,0 chrXVI 776361 . G C 3704.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.0955;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.08;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3704,364,0 chrXVI 777410 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3583;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=27.19;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3426,325,0 chrXVI 785197 . A G 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=-0.483;QD=25.90;ReadPosRankSum=1.704;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:3244,313,0 chrXVI 785737 . A G 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=166;Dels=0.00;FS=3.201;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.096;QD=25.30;ReadPosRankSum=1.647;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:1,162:166:99:4199,412,0 chrXVI 787292 . G A 4816.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.82;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4816,463,0 chrXVI 790660 . A C 5589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=222;Dels=0.00;FS=2.576;HaplotypeScore=12.7166;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.824;QD=25.18;ReadPosRankSum=2.968;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:3,219:222:99:5589,535,0 chrXVI 791203 . T C 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.697;QD=27.10;ReadPosRankSum=1.697;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2743,274,0 chrXVI 793555 . T G 3734.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.67;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3734,367,0 chrXVI 795379 . T C 3454.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.37;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3454,340,0 chrXVI 797429 . C T 3879.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3879,379,0 chrXVI 799226 . G C 3213.98 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.56;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,117:121:99:3247,316,0 chrXVI 799614 . A T 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.619;QD=26.60;ReadPosRankSum=1.664;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:4070,388,0 chrXVI 802415 . A G 3041 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=27.65;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:3074,307,0 chrXVI 803590 . T C 4813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=3.248;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.603;QD=25.60;ReadPosRankSum=1.695;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4813,472,0 chrXVI 804427 . G T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=27.50;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3250,313,0 chrXVI 810605 . A G 1711 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=16.61;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1744,177,0 chrXVI 811271 . C T 7276.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=11.4206;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.89;SB=-3.733e+03 GT:AD:DP:GQ:PL 1/1:0,279:281:99:7276,680,0 chrXVI 813147 . T C 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.765;QD=26.35;ReadPosRankSum=1.670;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2958,295,0 chrXVI 814111 . T C 4036.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.82;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4036,388,0 chrXVI 816544 . T C 3932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=3.131;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.024;QD=26.93;ReadPosRankSum=1.661;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3932,382,0 chrXVI 818085 . T C 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.352;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.084;QD=22.19;ReadPosRankSum=1.690;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1875,183,0 chrXVI 818309 . G T 5158.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=28.03;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5158,490,0 chrXVI 819735 . C T 2944 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.16;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2977,286,0 chrXVI 822177 . G A 6364.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=12.6498;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.08;SB=-3.329e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:6364,622,0 chrXVI 823782 . A G 5629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=216;Dels=0.00;FS=9.462;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.409;QD=26.06;ReadPosRankSum=2.949;SB=-3.134e+03 GT:AD:DP:GQ:PL 1/1:3,213:216:99:5629,541,0 chrXVI 826128 . A C 3767.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.78;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3767,367,0 chrXVI 828256 . T G 5082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=191;Dels=0.00;FS=2.804;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.071;QD=26.61;ReadPosRankSum=2.424;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:5082,499,0 chrXVI 828790 . C G 4722.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.8255;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.80;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4722,460,0 chrXVI 830982 . T C 1235 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=28.07;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1268,123,0 chrXVI 832988 . T G 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.563;DP=205;Dels=0.00;FS=15.376;HaplotypeScore=19.4490;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;MQRankSum=0.911;QD=16.82;ReadPosRankSum=1.024;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:6,197:205:99:3449,321,0 chrXVI 833262 . T C 4471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=174;Dels=0.00;FS=5.809;HaplotypeScore=10.6300;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.584;QD=25.70;ReadPosRankSum=2.925;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:4471,439,0 chrXVI 835119 . C T 2842 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=16.3460;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=17.99;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2875,277,0 chrXVI 835125 . G A 2630 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=7.2528;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=16.86;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2663,262,0 chrXVI 835149 . T A 2134 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=16.54;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2167,213,0 chrXVI 837862 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=26.49;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2232,213,0 chrXVI 838970 . T A 1144 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=31.15;MQ0=0;MQRankSum=-2.391;QD=27.90;ReadPosRankSum=2.330;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,39:41:99:1177,114,0 chrXVI 839079 . C T 1133 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.433;DP=128;Dels=0.00;FS=14.674;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.50;MQ0=40;MQRankSum=-0.276;QD=8.85;ReadPosRankSum=-1.260;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:22,104:128:93:1166,93,0 chrXVI 839118 . C T 32.97 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.05;MQ0=0;QD=0.45;SB=-2.298e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:9:65,9,0 chrXVI 839142 . T A 1209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1430;MLEAC=2;MLEAF=1.00;MQ=35.51;MQ0=0;MQRankSum=-1.505;QD=11.30;ReadPosRankSum=1.700;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1242,123,0 chrXVI 839169 . C T 2298 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=16.90;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2331,234,0 chrXVI 839190 . A G 3130 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=46.13;MQ0=0;QD=19.94;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3163,316,0 chrXVI 840461 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.72;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2618,255,0 chrXVI 840560 . A T 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.2529;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.510;QD=23.11;ReadPosRankSum=2.377;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3199,301,0 chrXVI 840653 . T C 105.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.785;DP=69;Dels=0.00;FS=7.060;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=2.597;QD=1.52;ReadPosRankSum=3.040;SB=-4.681e+02 GT:AD:DP:GQ:PL 1/1:7,62:69:18:138,18,0 chrXVI 841449 . T C 5414.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.04;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5414,529,0 chrXVI 842329 . G A 4155.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.47;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:4155,391,0 chrXVI 843618 . A G 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=145;Dels=0.00;FS=6.006;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.743;QD=26.78;ReadPosRankSum=2.896;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3883,379,0 chrXVI 843702 . T C 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;MQRankSum=-0.114;QD=25.17;ReadPosRankSum=1.694;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:4631,460,0 chrXVI 844251 . T C 2037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;MQRankSum=0.154;QD=22.38;ReadPosRankSum=1.694;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2070,216,0 chrXVI 844416 . G A 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.16;MQ0=2;QD=3.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,2:4:6:46,6,0 chrXVI 850437 . T G 5714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=35.54;MQ0=0;MQRankSum=1.016;QD=27.47;ReadPosRankSum=1.665;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:5714,556,0 chrXVI 850463 . A C 4677.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.7130;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=0;QD=27.67;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4677,460,0 chrXVI 850488 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.6483;MLEAC=2;MLEAF=1.00;MQ=33.94;MQ0=0;QD=25.61;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3508,352,0 chrXVI 850634 . A T 2639 filter AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.72;MQ0=1;QD=21.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2672,259,0 chrXVI 856656 . T G 334.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=18.01;MQ0=39;MQRankSum=1.510;QD=4.91;ReadPosRankSum=-0.120;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,40:68:99:364,0,179 chrXVI 856761 . T C 1596 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.652;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=25.95;MQ0=19;MQRankSum=0.234;QD=19.00;ReadPosRankSum=2.450;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:17,67:84:82:1629,82,0 chrXVI 856887 . T A 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;DP=88;Dels=0.00;FS=50.327;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=48.57;MQ0=3;MQRankSum=-4.449;QD=0.81;ReadPosRankSum=-0.101;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,17:88:99:101,0,1754 chrXVI 860239 . T A 2736 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.81;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2769,268,0 chrXVI 860718 . C G 4573.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.13;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4573,445,0 chrXVI 861771 . A G 4847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=182;Dels=0.00;FS=11.614;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.927;QD=26.63;ReadPosRankSum=2.961;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:3,177:182:99:4847,472,0 chrXVI 863372 . G A 5583.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.0748;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.84;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5583,550,0 chrXVI 864668 . A G 2087 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=15.81;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2120,207,0 chrXVI 864677 . C T 2685 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.04;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2718,259,0 chrXVI 867326 . T C 3221.92 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5984;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.37;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3255,319,0 chrXVI 871361 . T C 4265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.659;QD=27.34;ReadPosRankSum=1.710;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:4265,418,0 chrXVI 872338 . T A 2849 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2882,274,0 chrXVI 872991 . T A 4403.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=27.01;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4403,421,0 chrXVI 873246 . A G 3526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=139;Dels=0.00;FS=2.587;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.892;QD=25.37;ReadPosRankSum=2.892;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3526,340,0 chrXVI 873415 . A T 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.610;QD=27.24;ReadPosRankSum=1.610;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2348,228,0 chrXVI 873630 . T C 2530 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.9261;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.91;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2563,258,0 chrXVI 874530 . C A 3777.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.5556;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.31;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3777,373,0 chrXVI 874996 . A G 5447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.3666;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.960;QD=25.22;ReadPosRankSum=2.404;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:5447,532,0 chrXVI 876668 . G C 2795 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2828,280,0 chrXVI 876706 . T C 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=144;Dels=0.00;FS=2.681;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=-2.433;QD=26.13;ReadPosRankSum=2.415;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3763,364,0 chrXVI 876811 . T C 5284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=225;Dels=0.00;FS=2.570;HaplotypeScore=18.9737;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.709;QD=23.48;ReadPosRankSum=2.897;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:3,221:224:99:5284,514,0 chrXVI 877070 . A G 6298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=271;Dels=0.00;FS=2.568;HaplotypeScore=25.3514;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.168;QD=23.24;ReadPosRankSum=2.929;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:3,266:271:99:6298,610,0 chrXVI 877504 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.54;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3049,283,0 chrXVI 879007 . G T 5029.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.61;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:5029,478,0 chrXVI 881834 . C A 5300.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.3274;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.66;SB=-3.311e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5300,511,0 chrXVI 884608 . A G 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.318;DP=161;Dels=0.00;FS=5.257;HaplotypeScore=9.4241;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.427;QD=23.42;ReadPosRankSum=3.285;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:4,157:161:99:3770,367,0 chrXVI 885979 . T A 4566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=182;Dels=0.00;FS=6.036;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.006;QD=25.09;ReadPosRankSum=2.851;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:4566,454,0 chrXVI 888040 . T C 4555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=170;Dels=0.00;FS=2.558;HaplotypeScore=11.9617;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.184;QD=26.79;ReadPosRankSum=2.947;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:4555,448,0 chrXVI 888534 . G A 5638.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.3256;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.63;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5638,541,0 chrXVI 890262 . C G 3057 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=15.9036;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3090,301,0 chrXVI 890346 . T A 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.309;DP=185;Dels=0.00;FS=9.080;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.628;QD=24.77;ReadPosRankSum=3.365;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:4,181:185:99:4583,451,0 chrXVI 891130 . A C 4086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=3.869;HaplotypeScore=13.0352;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.067;QD=26.03;ReadPosRankSum=1.688;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:4086,391,0 chrXVI 891335 . A G 5132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=206;Dels=0.00;FS=6.656;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.221;QD=24.91;ReadPosRankSum=2.402;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:5132,511,0 chrXVI 891344 . T C 4809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=200;Dels=0.00;FS=2.957;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=1.668;QD=24.05;ReadPosRankSum=2.425;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:2,196:200:99:4809,472,0 chrXVI 891619 . A G 5855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.364;DP=238;Dels=0.00;FS=13.476;HaplotypeScore=27.1111;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.998;QD=24.60;ReadPosRankSum=3.409;SB=-3.056e+03 GT:AD:DP:GQ:PL 1/1:4,231:238:99:5855,571,0 chrXVI 891791 . G A 5987.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.8468;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.64;SB=-3.166e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5987,601,0 chrXVI 892106 . G A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=117.6042;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;QD=0.16;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:6:52,6,0 chrXVI 892115 . G A 2629 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=21.91;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2662,256,0 chrXVI 892122 . T C 2232 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.35;MQ0=0;QD=20.67;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2265,219,0 chrXVI 892709 . T A 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.208;QD=24.71;ReadPosRankSum=1.616;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2973,283,0 chrXVI 892994 . C T 5150.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.4372;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.11;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5150,493,0 chrXVI 893092 . G A 6676.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=16.6234;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=27.03;SB=-3.271e+03 GT:AD:DP:GQ:PL 1/1:0,244:247:99:6676,634,0 chrXVI 893345 . C T 7240.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=14.9913;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.86;SB=-4.100e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:7240,689,0 chrXVI 893447 . C G 6489.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=28.5991;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.43;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:0,266:277:99:6489,637,0 chrXVI 893672 . T C 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=7.659;HaplotypeScore=6.4339;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.742;QD=25.02;ReadPosRankSum=1.699;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2660,262,0 chrXVI 894011 . T C 3347.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.8763;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.56;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3347,325,0 chrXVI 894337 . T G 3158 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.29;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3191,313,0 chrXVI 895022 . C G 4748.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.8942;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.82;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4748,472,0 chrXVI 896683 . A G 6108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=228;Dels=0.00;FS=3.455;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.165;QD=26.79;ReadPosRankSum=1.686;SB=-3.008e+03 GT:AD:DP:GQ:PL 1/1:1,225:228:99:6108,580,0 chrXVI 896710 . G C 5936.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=13.9500;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=25.05;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:0,234:237:99:5936,580,0 chrXVI 896989 . A T 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.6820;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.221;QD=23.45;ReadPosRankSum=1.695;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2237,208,0 chrXVI 897219 . C A 814 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=30.15;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:81:847,81,0 chrXVI 897538 . T C 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.116;QD=22.97;ReadPosRankSum=1.673;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2744,271,0 chrXVI 900472 . C T 4072.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4072,382,0 chrXVI 907771 . C T 3667.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=24.13;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3667,355,0 chrXVI 907772 . C T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.44;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3609,358,0 chrXVI 907815 . T C 3851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=3.014;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.707;QD=22.39;ReadPosRankSum=2.407;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3851,373,0 chrXVI 908134 . A C 3003 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=19.13;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3036,306,0 chrXVI 908156 . G A 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.663;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.8937;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;MQRankSum=1.711;QD=16.01;ReadPosRankSum=1.091;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:2643,256,0 chrXVI 908173 . A T 1688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.703;DP=162;Dels=0.00;FS=15.799;HaplotypeScore=3.9118;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;MQRankSum=-0.449;QD=10.42;ReadPosRankSum=1.487;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:1721,130,0 chrXVI 908318 . A G 4218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=187;Dels=0.00;FS=3.001;HaplotypeScore=19.0332;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.715;QD=22.56;ReadPosRankSum=2.396;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:2,182:187:99:4218,421,0 chrXVI 908498 . C T 4164.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=25.39;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4164,400,0 chrXVI 908706 . C T 4292.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=27.16;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4292,409,0 chrXVI 908852 . T C 5100.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.4229;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.02;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:5100,496,0 chrXVI 911554 . C T 4438.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.3514;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.22;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4438,424,0 chrXVI 912059 . T A 1869 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.70;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1902,180,0 chrXVI 915200 . G C 3731.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1691;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3731,364,0 chrXVI 916067 . G A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=15.4205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.11;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3991,379,0 chrXVI 916830 . A T 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=121;Dels=0.00;FS=2.589;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.642;QD=25.66;ReadPosRankSum=2.909;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:3138,295,0 chrXVI 919665 . G A 6612.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.78;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6612,619,0 chrXVI 919704 . G A 5699.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.14;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5699,580,0 chrXVI 919752 . G A 5153.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.3699;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.01;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,202:206:99:5153,517,0 chrXVI 919848 . A G 6514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.398;DP=252;Dels=0.00;FS=5.230;HaplotypeScore=13.7048;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-1.216;QD=25.85;ReadPosRankSum=3.391;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:4,246:252:99:6514,640,0 chrXVI 919896 . C T 7401.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=20.5057;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=26.53;SB=-3.485e+03 GT:AD:DP:GQ:PL 1/1:0,278:279:99:7401,727,0 chrXVI 920001 . C A 4426.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.92;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4426,427,0 chrXVI 920048 . T C 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=168;Dels=0.00;FS=6.100;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=1.031;QD=21.23;ReadPosRankSum=2.897;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:3,162:168:99:3567,349,0 chrXVI 920052 . T C 3581.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.58;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3581,352,0 chrXVI 920178 . G C 3423.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=23.45;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3423,331,0 chrXVI 920191 . A C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=24.31;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3266,316,0 chrXVI 920519 . A C 1979 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=76.3541;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=23.56;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2012,198,0 chrXVI 920574 . A G 1615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.498;QD=22.12;ReadPosRankSum=1.685;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1648,162,0 chrXVI 920598 . C T 918 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.03;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=14.81;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:96:951,96,0 chrXVI 920758 . C T 3319.01 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=29.11;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3319,327,0 chrXVI 920779 . T C 3488.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=35.59;MQ0=0;QD=27.46;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3488,363,0 chrXVI 920827 . G A 1418 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;QD=16.11;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1451,168,0 chrXVI 920829 . C T 1373 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=15.78;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1406,167,0 chrXVI 920832 . G C 1303 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=30.88;MQ0=0;QD=13.30;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1336,156,0 chrXVI 920869 . A T 1974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=8.665;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.44;MQ0=0;MQRankSum=-0.845;QD=15.79;ReadPosRankSum=1.677;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2007,201,0 chrXVI 920877 . G A 1777 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;QD=13.16;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,132:135:99:1810,183,0 chrXVI 920890 . C T 2250 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;QD=14.52;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2283,222,0 chrXVI 920957 . A G 4740.01 SnpCluster AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=19.92;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:4740,460,0 chrXVI 920958 . C T 4811.01 SnpCluster AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=20.21;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:4811,460,0 chrXVI 920964 . T C 4713.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;MQRankSum=0.402;QD=18.85;ReadPosRankSum=1.718;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:1,249:250:99:4713,466,0 chrXVI 920999 . C T 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=194.6925;MLEAC=2;MLEAF=1.00;MQ=38.54;MQ0=0;MQRankSum=-1.226;QD=13.05;ReadPosRankSum=0.291;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:1,225:228:99:3008,300,0 chrXVI 921020 . G T 1559 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;QD=7.12;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:1592,162,0 chrXVI 921116 . A G 5304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;MQRankSum=0.758;QD=21.13;ReadPosRankSum=1.663;SB=-3.484e+03 GT:AD:DP:GQ:PL 1/1:1,248:251:99:5304,529,0 chrXVI 921117 . A C 5151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=252;Dels=0.00;FS=5.989;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;MQRankSum=0.466;QD=20.44;ReadPosRankSum=2.932;SB=-3.386e+03 GT:AD:DP:GQ:PL 1/1:3,247:252:99:5151,514,0 chrXVI 921271 . A C 4768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=191;Dels=0.00;FS=3.220;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=0.735;QD=24.96;ReadPosRankSum=1.714;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4768,463,0 chrXVI 921352 . A C 4098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;DP=178;Dels=0.00;FS=2.583;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=-0.514;QD=23.02;ReadPosRankSum=2.960;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:3,173:178:99:4098,397,0 chrXVI 921475 . C T 4400.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=22.56;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4400,424,0 chrXVI 921485 . T C 4207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=195;Dels=0.00;FS=3.078;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;MQRankSum=0.422;QD=21.57;ReadPosRankSum=1.696;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4207,412,0 chrXVI 921548 . C T 4104.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=163.0670;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=23.06;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4104,394,0 chrXVI 921595 . C A 2639 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=20.78;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2672,256,0 chrXVI 921639 . T C 1931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.835;DP=107;Dels=0.00;FS=20.863;HaplotypeScore=9.0540;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=-1.606;QD=18.05;ReadPosRankSum=3.985;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:6,100:107:99:1964,189,0 chrXVI 921660 . A C 2038 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=20.59;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2071,198,0 chrXVI 921661 . T C 1949 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=19.69;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1982,195,0 chrXVI 921692 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=18.91;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2850,285,0 chrXVI 921728 . C T 2297 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=43.20;MQ0=0;QD=18.09;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2330,228,0 chrXVI 921737 . G A 1991 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=17.16;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2024,198,0 chrXVI 921739 . T G 1895 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=0;QD=15.92;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:1928,198,0 chrXVI 921845 . G A 4671.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.7955;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=25.81;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4671,460,0 chrXVI 921937 . C T 2861 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.26;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2894,286,0 chrXVI 921984 . G A 2144 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=18.02;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2177,210,0 chrXVI 921985 . G A 2197 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=18.31;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2230,213,0 chrXVI 921998 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.5165;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=16.07;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2234,228,0 chrXVI 922017 . T C 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=-1.592;QD=17.50;ReadPosRankSum=1.712;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3078,295,0 chrXVI 922220 . A G 4920.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.2816;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=24.60;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4920,484,0 chrXVI 922297 . T C 5033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=216;Dels=0.00;FS=5.933;HaplotypeScore=17.5299;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-2.154;QD=23.30;ReadPosRankSum=2.949;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:3,212:216:99:5033,499,0 chrXVI 922477 . T C 7221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=11.1127;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.155;QD=26.16;ReadPosRankSum=1.694;SB=-3.053e+03 GT:AD:DP:GQ:PL 1/1:1,275:276:99:7221,703,0 chrXVI 922541 . G C 6317.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=12.1416;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=21.63;SB=-3.721e+03 GT:AD:DP:GQ:PL 1/1:0,289:292:99:6317,616,0 chrXVI 922561 . C T 6437.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.90;SB=-4.247e+03 GT:AD:DP:GQ:PL 1/1:0,307:308:99:6437,619,0 chrXVI 922622 . A C 6725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=292;Dels=0.00;FS=5.514;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.184;QD=23.03;ReadPosRankSum=2.976;SB=-3.466e+03 GT:AD:DP:GQ:PL 1/1:3,287:292:99:6725,652,0 chrXVI 922830 . C T 3878.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.02;FS=0.000;HaplotypeScore=36.4694;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.68;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3878,367,0 chrXVI 922942 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.5747;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=23.05;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2914,280,0 chrXVI 922958 . T A 2784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.357;QD=21.42;ReadPosRankSum=2.900;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2817,268,0 chrXVI 923356 . G A 4802.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.5347;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=25.82;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4802,481,0 chrXVI 923402 . C A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.0119;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=27.28;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:4010,379,0 chrXVI 923850 . C G 4420.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8530;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=26.00;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4420,433,0 chrXVI 923983 . C G 3558.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.7756;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.10;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3558,358,0 chrXVI 924094 . G A 3728.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.6319;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=27.01;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3728,352,0 chrXVI 924165 . T C 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=123;Dels=0.00;FS=3.495;HaplotypeScore=9.9051;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-1.028;QD=20.71;ReadPosRankSum=1.648;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2580,258,0 chrXVI 924180 . C T 2706 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.33;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2739,270,0 chrXVI 924428 . G A 2866 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=22.05;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2899,286,0 chrXVI 924658 . G A 3193 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.39;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3226,316,0 chrXVI 924915 . A G 5567.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=27.70;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5567,538,0 chrXVI 924973 . T C 4730.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.4808;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.13;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4730,466,0 chrXVI 925093 . T C 4689.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4689,457,0 chrXVI 925138 . A G 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.8520;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.084;QD=24.55;ReadPosRankSum=1.710;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3854,382,0 chrXVI 925172 . C G 3652.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=27.25;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3652,355,0 chrXVI 925240 . T A 3733.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=27.25;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3733,352,0 chrXVI 925300 . A G 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=3.585;HaplotypeScore=5.5532;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.329;QD=27.54;ReadPosRankSum=1.646;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3332,331,0 chrXVI 925559 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.01;FS=3.554;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-0.280;QD=25.04;ReadPosRankSum=1.656;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3430,331,0 chrXVI 925572 . C T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=24.17;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3504,331,0 chrXVI 925584 . T C 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=156;Dels=0.00;FS=3.606;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=-0.333;QD=20.54;ReadPosRankSum=1.688;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3238,319,0 chrXVI 925593 . G C 2958 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8643;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=20.69;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2991,298,0 chrXVI 925746 . T A 2856 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.22;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2889,289,0 chrXVI 925939 . T C 4623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=180;Dels=0.00;FS=2.859;HaplotypeScore=19.3604;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.545;QD=25.68;ReadPosRankSum=2.408;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:4623,445,0 chrXVI 926181 . C T 3730.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.43;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3730,358,0 chrXVI 927353 . T G 646 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;QD=15.38;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:69:679,69,0 chrXVI 927518 . A T 29.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=48.3254;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.57;SB=-1.228e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:6:61,6,0 chrXVI 927520 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=49.2919;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.42;SB=-1.238e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:6:53,6,0 chrXVI 927907 . A C 5022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.147;DP=203;Dels=0.00;FS=5.136;HaplotypeScore=19.3398;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;MQRankSum=-1.142;QD=24.74;ReadPosRankSum=2.661;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:4,197:203:99:5022,493,0 chrXVI 927980 . A G 5380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=201;Dels=0.00;FS=6.065;HaplotypeScore=19.1456;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.190;QD=26.77;ReadPosRankSum=1.715;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,197:201:99:5380,523,0 chrXVI 929522 . C T 4379.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=25.91;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4379,418,0 chrXVI 929531 . C T 4374.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.8498;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.27;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4374,424,0 chrXVI 929675 . A G 4397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=177;Dels=0.00;FS=3.240;HaplotypeScore=11.4069;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.564;QD=24.84;ReadPosRankSum=1.673;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:4397,442,0 chrXVI 933168 . T C 4804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=181;Dels=0.00;FS=11.407;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.283;QD=26.54;ReadPosRankSum=2.961;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:4804,475,0 chrXVI 933628 . A G 2346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.220;DP=97;Dels=0.00;FS=12.884;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.715;QD=24.19;ReadPosRankSum=3.293;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:4,93:97:99:2379,231,0 chrXVI 933766 . T C 3385.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.24;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3385,337,0 chrXVI 934884 . C T 5735.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=27.05;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5735,544,0 chrXVI 935251 . A T 4090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=3.808;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.613;QD=25.40;ReadPosRankSum=1.711;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:4090,388,0 chrXVI 935931 . G T 4012.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.0940;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.86;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4012,376,0 chrXVI 936666 . A G 2856 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,112:117:99:2889,285,0 chrXVI 938441 . T C 4947.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.77;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4947,475,0 chrXVI 939489 . G C 4314.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.6933;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.23;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4314,424,0 chrXVI 941186 . A T 4397.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=27.31;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4397,415,0 chrXVI 942253 . A G 3699.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.9509;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.51;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3699,376,0 chrXVI 942537 . C T 3997.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.566;DP=437;Dels=0.00;FS=36.887;HaplotypeScore=203.1732;MLEAC=1;MLEAF=0.500;MQ=47.86;MQ0=0;MQRankSum=1.660;QD=9.15;ReadPosRankSum=-1.064;SB=-3.470e+02 GT:AD:DP:GQ:PL 0/1:255,181:437:99:3997,0,5247 chrXVI 942573 . C G 4768.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.117;DP=798;Dels=0.00;FS=199.426;HaplotypeScore=347.0596;MLEAC=1;MLEAF=0.500;MQ=39.28;MQ0=1;MQRankSum=0.406;QD=5.97;ReadPosRankSum=1.818;SB=-2.267e+03 GT:AD:DP:GQ:PL 0/1:464,326:798:99:4768,0,5830 chrXVI 942580 . T G 4567.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.776;DP=872;Dels=0.00;FS=72.577;HaplotypeScore=610.7569;MLEAC=1;MLEAF=0.500;MQ=38.20;MQ0=1;MQRankSum=4.464;QD=5.24;ReadPosRankSum=2.179;SB=-2.535e+03 GT:AD:DP:GQ:PL 0/1:573,299:872:99:4567,0,6787 chrXVI 942589 . G A 5734.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.683;DP=945;Dels=0.00;FS=17.125;HaplotypeScore=374.7307;MLEAC=1;MLEAF=0.500;MQ=38.69;MQ0=1;MQRankSum=-13.792;QD=6.07;ReadPosRankSum=2.003;SB=-2.912e+03 GT:AD:DP:GQ:PL 0/1:290,653:945:99:5734,0,5720 chrXVI 942759 . A G 1057.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;DP=708;Dels=0.00;FS=35.954;HaplotypeScore=43.7710;MLEAC=1;MLEAF=0.500;MQ=36.47;MQ0=27;MQRankSum=-6.411;QD=1.49;ReadPosRankSum=-4.056;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:566,139:708:99:1087,0,9429 chrXVI 942826 . C G 3178.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.499;DP=842;Dels=0.00;FS=7.183;HaplotypeScore=156.4649;MLEAC=1;MLEAF=0.500;MQ=39.52;MQ0=1;MQRankSum=5.981;QD=3.77;ReadPosRankSum=-2.130;SB=-8.440e+02 GT:AD:DP:GQ:PL 0/1:599,234:840:99:3208,0,7809 chrXVI 942869 . T C 4045.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.721;DP=356;Dels=0.00;FS=7.426;HaplotypeScore=59.9954;MLEAC=1;MLEAF=0.500;MQ=34.74;MQ0=13;MQRankSum=7.891;QD=11.36;ReadPosRankSum=-0.517;SB=-1.203e+03 GT:AD:DP:GQ:PL 0/1:93,253:356:99:4045,0,147 chrXVI 942936 . G A 2667 filter AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.44;MQ0=39;QD=14.04;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:2700,268,0 chrXVI 943050 . C A 55.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.108;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=26.56;MQ0=8;MQRankSum=-0.944;QD=0.52;ReadPosRankSum=-0.659;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,23:105:85:85,0,1435 chrXVI 943160 . G T 3491.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.054;DP=144;Dels=0.00;FS=3.475;HaplotypeScore=2.7845;MLEAC=2;MLEAF=1.00;MQ=31.96;MQ0=6;MQRankSum=0.628;QD=24.24;ReadPosRankSum=0.828;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3491,337,0 chrXVI 943229 . A T 776 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=15.1939;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=0;QD=22.82;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:87:809,87,0 chrXVI 943259 . C T 28.77 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.79;MQ0=0;MQRankSum=0.731;QD=5.75;ReadPosRankSum=-0.731;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:1,4:5:6:60,6,0 chrXVI 943456 . C T 40.97 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=9.77;MQ0=49;QD=0.69;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:44,15:59:9:73,9,0